BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039863
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 126/284 (44%), Gaps = 52/284 (18%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD--TAL 181
+N K ET LH+AAR GH ++ K L+ K +AKD T L
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQNKAK------------------VNAKAKDDQTPL 84
Query: 182 HEAVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVD 239
H A R ++VK+L + +PNL A AG TPL++AA G+ +E +L+ E
Sbjct: 85 HCAARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGH---VETVLALLEKEAS 138
Query: 240 HGPM---GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLH 296
M G T LH AA + K R + ++LL + + G PLH
Sbjct: 139 QACMTKKGFTPLHVAA-----------KYGKVR-VAELLLE--RDAHPNAAGKNGLTPLH 184
Query: 297 LAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSS-CELV 355
+A H N +VK LL + + P G PLH+AA + + + L++ S+ E V
Sbjct: 185 VAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243
Query: 356 DDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
+G H AA G V LL + GNL N+ G TPL
Sbjct: 244 --QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK---SGLTPL 282
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 133/305 (43%), Gaps = 49/305 (16%)
Query: 108 NFVRVILE--MCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAA 165
N V+++LE P L A G T LHIAAR GH + V L+ E A+
Sbjct: 94 NMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETVLALL------------EKEAS 138
Query: 166 ARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED--PNLSYDANEAGETPLYLAAERGY 223
M + T LH A +Y +V V ++L + D PN A + G TPL++A
Sbjct: 139 QACM----TKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNN 191
Query: 224 KDVMEDILSTCESPVDHGPM--GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG 281
D+++ +L SP H P G T LH AA + E+ + LL+ G
Sbjct: 192 LDIVKLLLPRGGSP--HSPAWNGYTPLHIAAKQNQV------------EVARSLLQY--G 235
Query: 282 TQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTM 341
QG PLHLAA G+ +V LL + + G PLHL A +G
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVA 294
Query: 342 QELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLE 401
LI+ + G+ H A+H G+ + V+FLL++ + +N K G +PL +
Sbjct: 295 DVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA---DVNAKTKLGYSPLHQ 350
Query: 402 HAVSG 406
A G
Sbjct: 351 AAQQG 355
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 36/236 (15%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183
A G T LH+A H + DIVK+L+ PH + T LH
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH----------------SPAWNGYTPLHI 218
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
A + NQV+V + L + + + ++ + G TPL+LAA+ G+ +++ +LS +
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G T LH A + + VL++ G + G+ PLH+A+H GN
Sbjct: 278 GLTPLHLVAQEGHV------------PVADVLIK--HGVMVDATTRMGYTPLHVASHYGN 323
Query: 304 YYVVKELL--KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
+VK LL +AD++A K G PLH AA +G + L+++ S E+ D
Sbjct: 324 IKLVKFLLQHQADVNAKTK---LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 213 TPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREII 272
TPL++A+ G+ +++++L SP T LH AA +T E+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT------------EVA 63
Query: 273 KVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLA 332
K LL++ D Q PLH AA +G+ +VK LL+ + + G PLH+A
Sbjct: 64 KYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIA 120
Query: 333 AGKGRAYTMQELI-RSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEK 391
A +G T+ L+ + +C + +G+ H AA G R E LLE + N +
Sbjct: 121 AREGHVETVLALLEKEASQAC--MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK- 177
Query: 392 NYDGNTPL 399
+G TPL
Sbjct: 178 --NGLTPL 183
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 26/169 (15%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA D VK L + +++ ++ G+TPL+LAAE G+K+V++ +LS P
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNA-SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G+T LH AA + +E++K+LL S+G D G PLHLAA
Sbjct: 67 DSDGKTPLHLAAENGH------------KEVVKLLL--SQGADPNAKDSDGKTPLHLAAE 112
Query: 301 LGNYYVVKELLKADISAAYKP---DNEGKIPLHLAAGKGRAYTMQELIR 346
G+ VVK LL S P D++G+ PL LA R + +E+++
Sbjct: 113 NGHKEVVKLLL----SQGADPNTSDSDGRTPLDLA----REHGNEEVVK 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 19/136 (13%)
Query: 179 TALHEAVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES 236
T LH A +VVK+L + DPN + D++ G+TPL+LAAE G+K+V++ +LS
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPN-AKDSD--GKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 237 PVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLH 296
P G+T LH AA + +E++K+LL S+G D G PL
Sbjct: 96 PNAKDSDGKTPLHLAAENGH------------KEVVKLLL--SQGADPNTSDSDGRTPLD 141
Query: 297 LAAHLGNYYVVKELLK 312
LA GN VVK L K
Sbjct: 142 LAREHGNEEVVKLLEK 157
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 215 LYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKV 274
L AAE G KD ++D+L G+T LH AA + +E++K+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH------------KEVVKL 55
Query: 275 LLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAG 334
LL S+G D G PLHLAA G+ VVK LL K D++GK PLHLAA
Sbjct: 56 LL--SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAE 112
Query: 335 KGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
G ++ L+ S + D G A G+ V+ L
Sbjct: 113 NGHKEVVK-LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 44/172 (25%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183
+++ G+T LH+AA +GH ++VK+L+++ P+ + + T LH
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD----------------GKTPLHL 76
Query: 184 AVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHG 241
A +VVK+L + DPN + D++ G+TPL+LAAE G+K+V++ +LS P
Sbjct: 77 AAENGHKEVVKLLLSQGADPN-AKDSD--GKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 242 PMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293
GRT L A RE+ + E++K+L + Q GWL
Sbjct: 134 SDGRTPLDLA--REHG----------NEEVVKLLEK-----------QGGWL 162
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 298 AAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELV 355
AA GN VK+LL+ AD++A+ D++GK PLHLAA G ++ L+ S +
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS---DSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAK 66
Query: 356 DDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
D G H AA +G + V+ LL S G N K+ DG TPL
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLL---SQGADPNAKDSDGKTPL 107
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 28/170 (16%)
Query: 181 LHEAVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPV 238
L EA D VK L + DPN S + G TPL+ AAE G+K++++ +LS P
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLA 298
GRT LH AA + +EI+K+LL SKG D G PLH A
Sbjct: 65 AKDSDGRTPLHYAAENGH------------KEIVKLLL--SKGADPNAKDSDGRTPLHYA 110
Query: 299 AHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR 346
A G+ +VK LL AD + + D++G+ PL LA R + +E+++
Sbjct: 111 AENGHKEIVKLLLSKGADPNTS---DSDGRTPLDLA----REHGNEEIVK 153
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 52/176 (29%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----T 179
+++ G T LH AA +GH +IVK+L+++ P+ AKD T
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPN--------------------AKDSDGRT 72
Query: 180 ALHEAVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP 237
LH A ++VK+L + DPN + G TPL+ AAE G+K++++ +LS P
Sbjct: 73 PLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 238 VDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293
GRT L A RE+ + EI+K+L + Q GWL
Sbjct: 130 NTSDSDGRTPLDLA--REHG----------NEEIVKLLEK-----------QGGWL 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D GW PLHLAAH G+ +V+ LLK AD++A D+ G PL
Sbjct: 30 VRILM--ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA---KDSLGVTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPS 383
HLAA +G ++ L+++ + D G+ H AA G VE LL+N +
Sbjct: 85 HLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ + G TPL+LAA G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
+G T LH AA R + EI++VLL++ G D G+ PLHLAA
Sbjct: 77 DSLGVTPLHLAARRGHL------------EIVEVLLKN--GADVNASDSHGFTPLHLAAK 122
Query: 301 LGNYYVVKELLK--ADISAAYK 320
G+ +V+ LLK AD++A K
Sbjct: 123 RGHLEIVEVLLKNGADVNAQDK 144
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 25/125 (20%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AA GH +IV+VL+ G AKD T LH
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKN--------------------GADVNAKDSLGVTPLHL 86
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
A R +++V++L K +++ ++ G TPL+LAA+RG+ +++E +L
Sbjct: 87 AARRGHLEIVEVLLKNGADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Query: 244 GRTAL 248
G+TA
Sbjct: 146 GKTAF 150
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 23/121 (19%)
Query: 114 LEMCPILL---LKANAK---GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAAR 167
LE+ +LL NAK G T LH+AAR GH +IV+VL+ +N +
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-------KNGAD------- 105
Query: 168 LMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVM 227
+ ++ T LH A + +++V++L K +++ ++ G+T ++ + G +D+
Sbjct: 106 --VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLA 162
Query: 228 E 228
E
Sbjct: 163 E 163
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 15/137 (10%)
Query: 211 GETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDRE 270
G TPL+LAA G+ +V++ +L GRT LH AA + E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL------------E 49
Query: 271 IIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLH 330
++K+LL + G D+ G PLHLAA G+ VVK LL+A K D G+ PLH
Sbjct: 50 VVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLH 106
Query: 331 LAAGKGRAYTMQELIRS 347
LAA G ++ L+ +
Sbjct: 107 LAARNGHLEVVKLLLEA 123
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
GRT LH AA + E++K+LL + G D+ G PLHLAA G+
Sbjct: 2 GRTPLHLAARNGHL------------EVVKLLLEA--GADVNAKDKNGRTPLHLAARNGH 47
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
VVK LL+A K D G+ PLHLAA G ++ L+ + + D G
Sbjct: 48 LEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPL 105
Query: 364 HFAAHSGSRRTVEFLLE 380
H AA +G V+ LLE
Sbjct: 106 HLAARNGHLEVVKLLLE 122
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPV 238
T LH A R ++VVK+L + +++ ++ G TPL+LAA G+ +V++ +L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLA 298
GRT LH AA + E++K+LL + G D+ G PLHLA
Sbjct: 63 AKDKNGRTPLHLAARNGHL------------EVVKLLLEA--GADVNAKDKNGRTPLHLA 108
Query: 299 AHLGNYYVVKELLKA 313
A G+ VVK LL+A
Sbjct: 109 ARNGHLEVVKLLLEA 123
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 37/156 (23%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AAR+GH ++VK+L+ G AKD T LH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--------------------GADVNAKDKNGRTPLHL 41
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
A R ++VVK+L + +++ ++ G TPL+LAA G+ +V++ +L
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSS 279
GRT LH AA + E++K+LL +
Sbjct: 101 GRTPLHLAARNGHL------------EVVKLLLEAG 124
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 114 LEMCPILL---LKANAK---GETLLHIAARHGHYDIVKVLI 148
LE+ +LL NAK G T LH+AAR+GH ++VK+L+
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 20/158 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ + +++G+TPL+LAA +G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
MG T LH AA + EI++VLL++ G D G+ PLHLAA
Sbjct: 77 DKMGDTPLHLAALYGHL------------EIVEVLLKN--GADVNATDTYGFTPLHLAAD 122
Query: 301 LGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKG 336
G+ +V+ LLK AD++A D GK ++ G
Sbjct: 123 AGHLEIVEVLLKYGADVNAQ---DKFGKTAFDISIDNG 157
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 20/163 (12%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA G D + +++ G+T LH AA + + EI++VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHL------------EIVEVLLK 68
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGK 335
G D+ G PLHLAA G+ +V+ LLK AD++A D G PLHLAA
Sbjct: 69 --HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT---DTYGFTPLHLAADA 123
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
G ++ L++ + D G F + +G+ E L
Sbjct: 124 GHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+T LH+AA GH +IV+VL+ + ++ DT LH A Y
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGAD----------------VNAADKMGDTPLHLAALY 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ + G TPL+LAA+ G+ +++E +L G+TA
Sbjct: 91 GHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 248 L 248
Sbjct: 150 F 150
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 313 ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSR 372
AD++A D+ GK PLHLAA KG ++ L++ + D G H AA G
Sbjct: 38 ADVNAE---DDSGKTPLHLAAIKGHLEIVEVLLKH-GADVNAADKMGDTPLHLAALYGHL 93
Query: 373 RTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG 406
VE LL+N G +N + G TPL A +G
Sbjct: 94 EIVEVLLKN---GADVNATDTYGFTPLHLAADAG 124
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183
A+ G+T LH+AA +GH +IV+VL+ +N + + T+ T LH
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLL-------KNGAD---------VNATDTYGFTPLHL 119
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
A +++V++L K +++ ++ G+T ++ + G +D+ E
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 215 LYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKV 274
L AAE G KD ++D++ GRT LH AA + +EI+K+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH------------KEIVKL 55
Query: 275 LLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLA 332
L+ SKG D G PLH AA G+ +VK L+ AD++A D++G+ PLH A
Sbjct: 56 LI--SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA---KDSDGRTPLHYA 110
Query: 333 AGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
A +G ++ LI S + D G A G+ V+ L
Sbjct: 111 AKEGHKEIVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPV 238
T LH A + ++VK+L + +++ ++ G TPL+ AA+ G+K++++ ++S
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSD-GRTPLHYAAKEGHKEIVKLLISKGADVN 97
Query: 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLA 298
GRT LH AA + +EI+K+L+ SKG D G PL LA
Sbjct: 98 AKDSDGRTPLHYAAKEGH------------KEIVKLLI--SKGADVNTSDSDGRTPLDLA 143
Query: 299 AHLGNYYVVKELLK 312
GN +VK L K
Sbjct: 144 REHGNEEIVKLLEK 157
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 298 AAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELV 355
AA GN VK+L++ AD++A+ D++G+ PLH AA +G ++ LI S +
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS---DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAK 66
Query: 356 DDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
D G H+AA G + V+ L+ S G +N K+ DG TPL
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLI---SKGADVNAKDSDGRTPL 107
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 215 LYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKV 274
L AAE G KD ++D++ GRT LH AA + +E++K+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGH------------KEVVKL 55
Query: 275 LLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLA 332
L+ SKG D G PLH AA G+ VVK L+ AD++A D++G+ PLH A
Sbjct: 56 LI--SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA---KDSDGRTPLHHA 110
Query: 333 AGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
A G ++ LI S + D G A G+ V+ L
Sbjct: 111 AENGHKEVVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPV 238
T LH A +VVK+L + +++ ++ G TPL+ AAE G+K+V++ ++S
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLA 298
GRT LH AA + +E++K+L+ SKG D G PL LA
Sbjct: 98 AKDSDGRTPLHHAAENGH------------KEVVKLLI--SKGADVNTSDSDGRTPLDLA 143
Query: 299 AHLGNYYVVKELLK 312
GN VVK L K
Sbjct: 144 REHGNEEVVKLLEK 157
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 298 AAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELV 355
AA GN VK+L++ AD++A+ D++G+ PLH AA G ++ LI S +
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS---DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAK 66
Query: 356 DDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG 406
D G H AA +G + V+ L+ S G +N K+ DG TPL A +G
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENG 114
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 48/174 (27%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----T 179
+++ G T LH AA +GH ++VK+LI++ G AKD T
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISK--------------------GADVNAKDSDGRT 72
Query: 180 ALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVD 239
LH A +VVK+L + +++ ++ G TPL+ AAE G+K+V++ ++S
Sbjct: 73 PLHHAAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 240 HGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293
GRT L A RE+ + E++K+L + Q GWL
Sbjct: 132 SDSDGRTPLDLA--REHG----------NEEVVKLLEK-----------QGGWL 162
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D GW PLHLAA+ G+ +V+ LLK AD++A D+ G PL
Sbjct: 30 VRILM--ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA---DDSLGVTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
HLAA +G ++ L+++ + D G+ H AA+ G VE LL++
Sbjct: 85 HLAADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+ LL AAR G D V++L+A + ++ T LH A +
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD----------------VNASDHVGWTPLHLAAYF 57
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ D + G TPL+LAA+RG+ +V+E +L + G T
Sbjct: 58 GHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTP 116
Query: 248 LHAAA 252
LH AA
Sbjct: 117 LHLAA 121
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G+ PLHLAA G+ +V+ LLK AD++A D +G PL
Sbjct: 30 VRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
HLAA +G ++ L+++ + D G+ H AA G VE LL+
Sbjct: 85 HLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++ G TPL+LAA G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA RE L EI++VLL++ G D+ G+ PLHLAA
Sbjct: 77 DKDGYTPLHLAA-REGHL-----------EIVEVLLKA--GADVNAKDKDGYTPLHLAAR 122
Query: 301 LGNYYVVKELLK--ADISAAYK 320
G+ +V+ LLK AD++A K
Sbjct: 123 EGHLEIVEVLLKAGADVNAQDK 144
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 20/137 (14%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G T LH AA RE L EI++VLL++ G D+ G+ PLHLAA G+
Sbjct: 47 GYTPLHLAA-REGHL-----------EIVEVLLKA--GADVNAKDKDGYTPLHLAAREGH 92
Query: 304 YYVVKELLKA--DISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWN 361
+V+ LLKA D++A D +G PLHLAA +G ++ L+++ + D G
Sbjct: 93 LEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDKFGKT 148
Query: 362 VFHFAAHSGSRRTVEFL 378
F + +G+ E L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 28/131 (21%)
Query: 125 NAK---GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD--- 178
NAK G T LH+AAR GH +IV+VL L G AKD
Sbjct: 41 NAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADVNAKDKDG 80
Query: 179 -TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP 237
T LH A R +++V++L K +++ ++ G TPL+LAA G+ +++E +L
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 238 VDHGPMGRTAL 248
G+TA
Sbjct: 140 NAQDKFGKTAF 150
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHL 331
+++L+ + G D+ G+ PLHLAA G+ +V+ LLKA K D +G PLHL
Sbjct: 18 VRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHL 74
Query: 332 AAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEK 391
AA +G ++ L+++ + D G+ H AA G VE LL+ G +N +
Sbjct: 75 AAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQ 130
Query: 392 NYDGNTPL 399
+ G TP
Sbjct: 131 DKFGKTPF 138
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 125 NAK---GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD--- 178
NAK G T LH+AAR GH +IV+VL L G AKD
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADVNAKDKDG 68
Query: 179 -TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP 237
T LH A R +++V++L K +++ ++ G TPL+LAA G+ +++E +L
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 238 VDHGPMGRTALHAA 251
G+T A
Sbjct: 128 NAQDKFGKTPFDLA 141
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHL 331
+++L+ + G D+ G+ PLHLAA G+ +V+ LLKA K D +G PLHL
Sbjct: 18 VRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHL 74
Query: 332 AAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEK 391
AA +G ++ L+++ + D G+ H AA G VE LL+ G +N +
Sbjct: 75 AAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQ 130
Query: 392 NYDGNTPL 399
+ G TP
Sbjct: 131 DKFGKTPF 138
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 125 NAK---GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD--- 178
NAK G T LH+AAR GH +IV+VL L G AKD
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADVNAKDKDG 68
Query: 179 -TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP 237
T LH A R +++V++L K +++ ++ G TPL+LAA G+ +++E +L
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 238 VDHGPMGRTALHAA 251
G+T A
Sbjct: 128 NAQDKFGKTPFDLA 141
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 22/159 (13%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANE-AGETPLYLAAERGYKDVMEDILSTCESPVD 239
L EA R Q D V++L ++ +AN+ G TPL+L G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 240 HGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA 299
G T LH AA+R + EI++VLL+ G D QG+ PLHLAA
Sbjct: 76 SDKSGWTPLHLAAYRGHL------------EIVEVLLKY--GADVNAMDYQGYTPLHLAA 121
Query: 300 HLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKG 336
G+ +V+ LLK AD++A D GK ++ G
Sbjct: 122 EDGHLEIVEVLLKYGADVNAQ---DKFGKTAFDISIDNG 157
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 270 EIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKI 327
EII+VLL+ + + D+ GW PLHLAA+ G+ +V+ LLK AD++A D +G
Sbjct: 61 EIIEVLLKYAADVNAS--DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM---DYQGYT 115
Query: 328 PLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
PLHLAA G ++ L++ + D G F + +G+ E L
Sbjct: 116 PLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 313 ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSR 372
AD++A D G PLHL G ++ L++ + D GW H AA+ G
Sbjct: 38 ADVNAN---DWFGITPLHLVVNNGHLEIIEVLLKYA-ADVNASDKSGWTPLHLAAYRGHL 93
Query: 373 RTVEFLLENPSLGNLMNEKNYDGNTPL 399
VE LL+ G +N +Y G TPL
Sbjct: 94 EIVEVLLK---YGADVNAMDYQGYTPL 117
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+ +GH +I++VL+ + ++++ T LH A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD----------------VNASDKSGWTPLHLAAYR 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ + G TPL+LAAE G+ +++E +L G+TA
Sbjct: 91 GHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 248 L 248
Sbjct: 150 F 150
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 31/125 (24%)
Query: 114 LEMCPILLLKA------NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAAR 167
LE+ +LL A + G T LH+AA GH +IV+VL
Sbjct: 60 LEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL-------------------- 99
Query: 168 LMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGY 223
L G A D T LH A +++V++L K +++ ++ G+T ++ + G
Sbjct: 100 LKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 224 KDVME 228
+D+ E
Sbjct: 159 EDLAE 163
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D GW PLHLAA+ G+ +V+ LLK AD++A D G PL
Sbjct: 30 VRILM--ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY---DTLGSTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
HLAA G ++ L+++ + DD G H AA+ G VE LL+
Sbjct: 85 HLAAHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R + D V++L +++ A+ G TPL+LAA G+ +++E +L +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
+G T LH AA + EI++VLL++ G D G PLHLAA+
Sbjct: 77 DTLGSTPLHLAAHFGHL------------EIVEVLLKN--GADVNAKDDNGITPLHLAAN 122
Query: 301 LGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKG 336
G+ +V+ LLK AD++A D GK ++ G
Sbjct: 123 RGHLEIVEVLLKYGADVNAQ---DKFGKTAFDISINNG 157
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183
A+ G T LH+AA GH +IV+VL+ +N + A LG+ T LH
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLL-------KNGAD---VNAYDTLGS------TPLHL 86
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
A + +++V++L K +++ ++ G TPL+LAA RG+ +++E +L
Sbjct: 87 AAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 244 GRTAL 248
G+TA
Sbjct: 146 GKTAF 150
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 25/105 (23%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AA GH +IV+VL+ G AKD T LH
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKN--------------------GADVNAKDDNGITPLHL 119
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
A +++V++L K +++ ++ G+T ++ G +D+ E
Sbjct: 120 AANRGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISINNGNEDLAE 163
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 356 DDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
D GW H AA+ G VE LL+N G +N + G+TPL
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKN---GADVNAYDTLGSTPL 84
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G +V+ LLK AD++A+ D+ G PL
Sbjct: 22 VRILM--ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS---DSAGITPL 76
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
HLAA G ++ L++ + D GW H AA SG VE LL++
Sbjct: 77 HLAAYDGHLEIVEVLLKH-GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA Q D V++L +++ ++ G TPL+LAA G +++E +L
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNA-TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA+ + EI++VLL+ G D+ GW PLHLAA
Sbjct: 69 DSAGITPLHLAAYDGHL------------EIVEVLLK--HGADVNAYDRAGWTPLHLAAL 114
Query: 301 LGNYYVVKELLK--ADISA 317
G +V+ LLK AD++A
Sbjct: 115 SGQLEIVEVLLKHGADVNA 133
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183
+++ G T LH+AA GH +IV+VL+ + + A T LH
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGAD----------------VNAYDRAGWTPLHL 111
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEA-GETPLYLAAERGYKDVME 228
A Q+++V++L K ++ +A +A G T ++ +G +D+ E
Sbjct: 112 AALSGQLEIVEVLLKHGADV--NAQDALGLTAFDISINQGQEDLAE 155
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA G D + +++ H G T LH AA+ + EI++VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHP------------EIVEVLLK 68
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGK 335
G D GW PLHLAA G+ +V+ LLK AD++A D G PLHLAA +
Sbjct: 69 --HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ---DAYGLTPLHLAADR 123
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
G ++ L++ + D G F + +G+ E L
Sbjct: 124 GHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++ G TPL+LAA G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAH-DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA + EI++VLL+ G D G PLHLAA
Sbjct: 77 DTDGWTPLHLAADNGHL------------EIVEVLLKY--GADVNAQDAYGLTPLHLAAD 122
Query: 301 LGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKG 336
G+ +V+ LLK AD++A D GK ++ G
Sbjct: 123 RGHLEIVEVLLKHGADVNAQ---DKFGKTAFDISIDNG 157
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 27/127 (21%)
Query: 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDT----ALH 182
+G T LH+AA GH +IV+VL+ G A+DT LH
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKH--------------------GADVNARDTDGWTPLH 85
Query: 183 EAVRYNQVDVVKMLTKEDPNLSYDANEA-GETPLYLAAERGYKDVMEDILSTCESPVDHG 241
A +++V++L K ++ +A +A G TPL+LAA+RG+ +++E +L
Sbjct: 86 LAADNGHLEIVEVLLKYGADV--NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Query: 242 PMGRTAL 248
G+TA
Sbjct: 144 KFGKTAF 150
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 313 ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSR 372
AD++A D++G PLHLAA G ++ L++ + D GW H AA +G
Sbjct: 38 ADVNAH---DDQGSTPLHLAAWIGHPEIVEVLLKH-GADVNARDTDGWTPLHLAADNGHL 93
Query: 373 RTVEFLLENPSLGNLMNEKNYDGNTPL 399
VE LL+ G +N ++ G TPL
Sbjct: 94 EIVEVLLK---YGADVNAQDAYGLTPL 117
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 43/212 (20%)
Query: 132 LHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVD 191
LH AA GH DI +L+ A + T +E + T L EA N ++
Sbjct: 15 LHAAAEAGHVDICHMLV----------------QAGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 192 VVKMLTKE----DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
VK L K DP + G T L+LAA++G+ +V++ +LS G M
Sbjct: 59 AVKYLIKAGALVDPK-----DAEGSTCLHLAAKKGHYEVVQYLLSN-------GQMDVNC 106
Query: 248 LHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVV 307
+ T Y K +++K+LL SKG+ D + + LH AA G +
Sbjct: 107 QDDGGWTPMIWATEY----KHVDLVKLLL--SKGSDINIRDNEENICLHWAAFSGCVDIA 160
Query: 308 KELL--KADISAAYKPDNEGKIPLHLAAGKGR 337
+ LL K D+ A + G PLH+AA + R
Sbjct: 161 EILLAAKCDLHAV---NIHGDSPLHIAARENR 189
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 91/225 (40%), Gaps = 23/225 (10%)
Query: 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES 236
K + LH A VD+ ML + N+ +E TPL AAE + + ++ ++
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 237 PVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLH 296
G T LH AA + + E+++ LL S+ D GW P+
Sbjct: 70 VDPKDAEGSTCLHLAAKKGH------------YEVVQYLL-SNGQMDVNCQDDGGWTPMI 116
Query: 297 LAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCEL 354
A + +VK LL +DI+ DNE I LH AA G + E++ +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINI---RDNEENICLHWAAFSG-CVDIAEILLAAKCDLHA 172
Query: 355 VDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
V+ G + H AA V L S L KN +G TPL
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---KNKEGETPL 214
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+A+G T LH+AA+ GHY++V+ L++ ++ + ++ T + A
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSN---------------GQMDVNCQDDGGWTPMIWA 118
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMG 244
Y VD+VK+L + +++ NE L+ AA G D+ E +L+ G
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG---TQTTKPDQQGWLPLHLAAHL 301
+ LH AA RE F +D + V L++ +G Q + Q W L ++ L
Sbjct: 178 DSPLHIAA-RENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNY 304
R+ LHAAA + +I +L+++ T DQ+ PL AA +
Sbjct: 12 RSPLHAAAEAGHV------------DICHMLVQAGANIDTCSEDQRT--PLMEAAENNHL 57
Query: 305 YVVKELLKADISAAYKP-DNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
VK L+KA A P D EG LHLAA KG +Q L+ + DD GW
Sbjct: 58 EAVKYLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Query: 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDRLA 422
+A V+ LL S G+ +N ++ + N L A SG I + K D A
Sbjct: 116 IWATEYKHVDLVKLLL---SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
Query: 423 FNHQNNS 429
N +S
Sbjct: 173 VNIHGDS 179
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ + G TPL+LAA+ G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA + EI++VLL+ G D +G+ PLHLAA+
Sbjct: 77 DNYGATPLHLAADNGHL------------EIVEVLLK--HGADVNAKDYEGFTPLHLAAY 122
Query: 301 LGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKG 336
G+ +V+ LLK AD++A D GK ++ G
Sbjct: 123 DGHLEIVEVLLKYGADVNAQ---DKFGKTAFDISIDNG 157
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD++A DN G PL
Sbjct: 30 VRILM--ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW---DNYGATPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
HLAA G ++ L++ + D G+ H AA+ G VE LL+
Sbjct: 85 HLAADNGHLEIVEVLLKH-GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+AA+ GH +IV+VL+ K N + A T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLL---KYGADVNAWDNYGA-------------TPLHLAADN 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ E G TPL+LAA G+ +++E +L G+TA
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYE-GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 248 L 248
Sbjct: 150 F 150
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G+ PLHLAA G+ +V+ LLK AD++A+ D G PL
Sbjct: 30 VRILM--ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS---DLTGITPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPS 383
HLAA G ++ L++ + D+ G H AA G VE LL++ +
Sbjct: 85 HLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 19/122 (15%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+AA +GH +IV+VL+ +N + V A+ L T LH A
Sbjct: 47 GYTPLHLAASNGHLEIVEVLL-------KNGAD--VNASDL-------TGITPLHLAAAT 90
Query: 188 NQVDVVKMLTKEDPNL-SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRT 246
+++V++L K ++ +YD + G TPL+LAA+ G+ +++E +L G+T
Sbjct: 91 GHLEIVEVLLKHGADVNAYDND--GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 247 AL 248
A
Sbjct: 149 AF 150
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 287 PDQQGWLPLHLAAHLGNYYVVKEL----LKADISAAYKPDNEGKIPLHLAAGKGRAYTMQ 342
PD GW P H+A +GN VVK L LK D++ K N+G LHLA GK Q
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQ 124
Query: 343 ELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG-NLMNEKNYDGNTPLLE 401
LI + +S + D H AA GS + +E L LG + +N ++ G TPL
Sbjct: 125 FLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPLF- 179
Query: 402 HAVS 405
HA++
Sbjct: 180 HALA 183
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCE 353
PLH A ++ V+ELL + S + D +G+IPLH + ++ E+ S E
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV----SFQAHEITSFLLSKME 60
Query: 354 LV------DDRGWNVFHFAAHSGSRRTVEFLLENP 382
V DD GW FH A G+ V+ L + P
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 22/246 (8%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP-VD 239
LH+A N+ V+ L P+L ++ G PL+ + ++ +LS E+ +D
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 240 HGP--MGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHL 297
P G T H A + E++K L K QG LHL
Sbjct: 66 DYPDDSGWTPFHIACSV------------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 298 AAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
A ++ V + L + ++ D +IPLH AA G ++ L S+ D
Sbjct: 114 AVG-KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 358 RGWN-VFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIKSFVCHP 416
+GW +FH A V + + + +L++ K L V K F +
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV-----KKFFLNN 227
Query: 417 KVDRLA 422
VD+LA
Sbjct: 228 VVDKLA 233
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 328 PLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNL 387
PLH A + + +QEL+ S PS D G H++ + FLL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 388 MNEKNYDGNTPL 399
+ + G TP
Sbjct: 65 DDYPDDSGWTPF 76
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNN-PEEGVAAARLMLG--------------- 171
G T HIA G+ ++VK L KP N +GV L +G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 172 ---TTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKD 225
++ LH A + ++++L + ++ G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 287 PDQQGWLPLHLAAHLGNYYVVKEL----LKADISAAYKPDNEGKIPLHLAAGKGRAYTMQ 342
PD GW P H+A +GN VVK L LK D++ K N+G LHLA GK Q
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQ 124
Query: 343 ELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG-NLMNEKNYDGNTPLLE 401
LI + +S + D H AA GS + +E L LG + +N ++ G TPL
Sbjct: 125 FLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPLF- 179
Query: 402 HAVS 405
HA++
Sbjct: 180 HALA 183
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCE 353
PLH A ++ V+ELL + S + D +G+IPLH + ++ E+ S E
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV----SFQAHEITSFLLSKME 60
Query: 354 LV------DDRGWNVFHFAAHSGSRRTVEFLLENP 382
V DD GW FH A G+ V+ L + P
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP-VD 239
LH+A N+ V+ L P+L ++ G PL+ + ++ +LS E+ +D
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 240 HGP--MGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHL 297
P G T H A + E++K L K QG LHL
Sbjct: 66 DYPDDSGWTPFHIACSV------------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 298 AAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
A ++ V + L + ++ D +IPLH AA G ++ L S+ D
Sbjct: 114 AVG-KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 358 RGWNVFHFAAHSGSRRTVEFLLE 380
+GW A G L+E
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVE 195
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 328 PLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNL 387
PLH A + + +QEL+ S PS D G H++ + FLL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 388 MNEKNYDGNTPL 399
+ + G TP
Sbjct: 65 DDYPDDSGWTPF 76
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNN-PEEGVAAARLMLG--------------- 171
G T HIA G+ ++VK L KP N +GV L +G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 172 ---TTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKD 225
++ LH A + ++++L + ++ G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 287 PDQQGWLPLHLAAHLGNYYVVKEL----LKADISAAYKPDNEGKIPLHLAAGKGRAYTMQ 342
PD GW P H+A +GN VVK L LK D++ K N+G LHLA GK Q
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQ 124
Query: 343 ELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG-NLMNEKNYDGNTPLLE 401
LI + +S + D H AA GS + +E L LG + +N ++ G TPL
Sbjct: 125 FLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPLF- 179
Query: 402 HAVS 405
HA++
Sbjct: 180 HALA 183
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCE 353
PLH A ++ V+ELL + S + D +G+IPLH + ++ E+ S E
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV----SFQAHEITSFLLSKME 60
Query: 354 LV------DDRGWNVFHFAAHSGSRRTVEFLLENP 382
V DD GW FH A G+ V+ L + P
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP-VD 239
LH+A N+ V+ L P+L ++ G PL+ + ++ +LS E+ +D
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 240 HGP--MGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHL 297
P G T H A + E++K L K QG LHL
Sbjct: 66 DYPDDSGWTPFHIACSV------------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 298 AAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
A ++ V + L + ++ D +IPLH AA G ++ L S+ D
Sbjct: 114 AVG-KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 358 RGWNVFHFAAHSGSRRTVEFLLE 380
+GW A G L+E
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVE 195
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 328 PLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNL 387
PLH A + + +QEL+ S PS D G H++ + FLL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 388 MNEKNYDGNTPL 399
+ + G TP
Sbjct: 65 DDYPDDSGWTPF 76
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNN-PEEGVAAARLMLG--------------- 171
G T HIA G+ ++VK L KP N +GV L +G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 172 ---TTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKD 225
++ LH A + ++++L + ++ G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ + G TPL+LAA G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA + EI++VLL+ G D G PLHLAA
Sbjct: 77 DVYGFTPLHLAAMTGHL------------EIVEVLLKY--GADVNAFDMTGSTPLHLAAD 122
Query: 301 LGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSC 348
G+ +V+ LLK AD++A D GK ++ G ++L +SC
Sbjct: 123 EGHLEIVEVLLKYGADVNAQ---DKFGKTAFDISIDNGN----EDLAKSC 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD+ AA D G PL
Sbjct: 30 VRILI--ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA---DVYGFTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
HLAA G ++ L++ + D G H AA G VE LL+
Sbjct: 85 HLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 27/126 (21%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AA GH +IV+VL+ G +A D T LH
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKH--------------------GADVDAADVYGFTPLHL 86
Query: 184 AVRYNQVDVVKMLTKEDPNL-SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGP 242
A +++V++L K ++ ++D G TPL+LAA+ G+ +++E +L
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Query: 243 MGRTAL 248
G+TA
Sbjct: 145 FGKTAF 150
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNY 304
RTALH A +T EI++ LL+ G D GW PLH+AA G
Sbjct: 41 RTALHWACSAGHT------------EIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXD 86
Query: 305 YVVKELL--KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNV 362
+VK LL A ++A + G PLH AA K R + + ++ ++ + D
Sbjct: 87 EIVKALLVKGAHVNAV---NQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYDATA 142
Query: 363 FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
H AA G+ + V LL + N+ ++ +GNTPL
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPL 176
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 160 EEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAA 219
+E + A + + T++ TALH A ++V+ L + ++ D ++AG +PL++AA
Sbjct: 23 KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAA 81
Query: 220 ERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSS 279
G ++++ +L H A + +Y K+R I V+L
Sbjct: 82 SAGXDEIVKALLVK-------------GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 280 KGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAY 339
G D +H AA GN +V LL S + D EG PLHLA + R
Sbjct: 129 -GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVE 186
Query: 340 TMQELI 345
+ L+
Sbjct: 187 EAKFLV 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 299 AHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR-SCPSSCELVDD 357
A+ G +KE + AD S A + D + + LH A G ++ L++ P + + DD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 71
Query: 358 RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
GW+ H AA +G V+ LL G +N N +G TPL
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVK---GAHVNAVNQNGCTPL 110
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 77/209 (36%), Gaps = 40/209 (19%)
Query: 130 TLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTA----LHEAV 185
T LH A GH +IV+ L L LG KD A LH A
Sbjct: 42 TALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDDAGWSPLHIAA 81
Query: 186 RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGR 245
++VK L + +++ N+ G TPL+ AA + ++ +L +P
Sbjct: 82 SAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140
Query: 246 TALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYY 305
TA+H AA + + F K T D +G PLHLA
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYK--------------ASTNIQDTEGNTPLHLACDEERVE 186
Query: 306 VVKELLKADISAAYKPDNEGKIPLHLAAG 334
K L+ S Y + E K PL +A G
Sbjct: 187 EAKFLVTQGAS-IYIENKEEKTPLQVAKG 214
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 106/258 (41%), Gaps = 34/258 (13%)
Query: 157 NNPEEGVAAARLMLGTTNEAKDT-ALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPL 215
NNP+EG ++ G +D L +AV+ VD+V+ L + N+++ E G TPL
Sbjct: 7 NNPQEGPTSSS---GRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL 63
Query: 216 YLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVL 275
+ A + +D++E +L PV G T AA +++K+
Sbjct: 64 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSV------------KLLKLF 111
Query: 276 LRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK----ADISAAYKPDNE-----GK 326
L SKG + D G+ AA G +K L K ++ K D E G
Sbjct: 112 L--SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 169
Query: 327 IPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVE----FLLENP 382
L AA KG ++ L+ + D+ G N A S VE LL++
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229
Query: 383 SLGNLMNEKNYDGNTPLL 400
+ N+ E+ G TPL+
Sbjct: 230 ADVNVRGER---GKTPLI 244
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNY 304
RTALH A +T EI++ LL+ G D GW PLH+AA G
Sbjct: 41 RTALHWACSAGHT------------EIVEFLLQL--GVPVNDKDDAGWSPLHIAASAGRD 86
Query: 305 YVVKELL--KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNV 362
+VK LL A ++A + G PLH AA K R + + ++ ++ + D
Sbjct: 87 EIVKALLVKGAHVNAV---NQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYDATA 142
Query: 363 FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
H AA G+ + V LL + N+ ++ +GNTPL
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPL 176
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 160 EEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAA 219
+E + A + + T++ TALH A ++V+ L + ++ D ++AG +PL++AA
Sbjct: 23 KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAA 81
Query: 220 ERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSS 279
G ++++ +L H A + +Y K+R I V+L
Sbjct: 82 SAGRDEIVKALLVK-------------GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 280 KGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAY 339
G D +H AA GN +V LL S + D EG PLHLA + R
Sbjct: 129 -GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVE 186
Query: 340 TMQELI 345
+ L+
Sbjct: 187 EAKFLV 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 299 AHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR-SCPSSCELVDD 357
A+ G +KE + AD S A + D + + LH A G ++ L++ P + + DD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 71
Query: 358 RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
GW+ H AA +G V+ LL G +N N +G TPL
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVK---GAHVNAVNQNGCTPL 110
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 40/219 (18%)
Query: 120 LLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDT 179
L + + T LH A GH +IV+ L L LG KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 180 A----LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCE 235
A LH A + ++VK L + +++ N+ G TPL+ AA + ++ +L
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 236 SPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPL 295
+P TA+H AA + + F K T D +G PL
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--------------ASTNIQDTEGNTPL 176
Query: 296 HLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAG 334
HLA K L+ S Y + E K PL +A G
Sbjct: 177 HLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKG 214
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNY 304
RTALH A +T EI++ LL+ G D GW PLH+AA G
Sbjct: 41 RTALHWACSAGHT------------EIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 305 YVVKELL--KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNV 362
+VK LL A ++A + G PLH AA K R + + ++ ++ + D
Sbjct: 87 EIVKALLGKGAQVNAV---NQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEATA 142
Query: 363 FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
H AA G+ + + LL + N+ ++ +GNTPL
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNI---QDTEGNTPL 176
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 160 EEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAA 219
+E + A + + T++ TALH A ++V+ L + ++ D ++AG +PL++AA
Sbjct: 23 KESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAA 81
Query: 220 ERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSS 279
G ++++ +L G T LH AA K+R I V+L
Sbjct: 82 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA-------------SKNRHEIAVMLLEG 128
Query: 280 KGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAY 339
G D +H AA GN ++ LL S + D EG PLHLA + R
Sbjct: 129 -GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVE 186
Query: 340 TMQELI 345
+ L+
Sbjct: 187 EAKLLV 192
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 83/209 (39%), Gaps = 40/209 (19%)
Query: 130 TLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTA----LHEAV 185
T LH A GH +IV+ L L LG KD A LH A
Sbjct: 42 TALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDDAGWSPLHIAA 81
Query: 186 RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGR 245
+ ++VK L + ++ N+ G TPL+ AA + ++ +L +P
Sbjct: 82 SAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 140
Query: 246 TALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYY 305
TA+H AA + + ++I +LL T D +G PLHLA
Sbjct: 141 TAMHRAA------------AKGNLKMIHILLYYKASTNIQ--DTEGNTPLHLACDEERVE 186
Query: 306 VVKELLKADISAAYKPDNEGKIPLHLAAG 334
K LL + ++ Y + E K PL +A G
Sbjct: 187 EAK-LLVSQGASIYIENKEEKTPLQVAKG 214
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 128 GETLLHIAARHGHYDIVKVLI---AECKKPHQN-----------NPEEGVAAARLMLGTT 173
G + LHIAA G +IVK L+ A+ +QN N E +A L G
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGAN 131
Query: 174 NEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAE 220
+AKD TA+H A + ++ +L + + E G TPL+LA +
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE-GNTPLHLACD 181
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNY 304
RTALH A +T EI++ LL+ G D GW PLH+AA G
Sbjct: 42 RTALHWACSAGHT------------EIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRD 87
Query: 305 YVVKELL--KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNV 362
+VK LL A ++A + G PLH AA K R + + ++ ++ + D
Sbjct: 88 EIVKALLGKGAQVNAV---NQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEATA 143
Query: 363 FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
H AA G+ + + LL + N+ ++ +GNTPL
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNI---QDTEGNTPL 177
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 16/191 (8%)
Query: 160 EEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAA 219
+E + A + + T++ TALH A ++V+ L + ++ D ++AG +PL++AA
Sbjct: 24 KESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAA 82
Query: 220 ERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSS 279
G ++++ +L G T LH AA K+R I V+L
Sbjct: 83 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA-------------SKNRHEIAVMLLEG 129
Query: 280 KGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAY 339
G D +H AA GN ++ LL S + D EG PLHLA + R
Sbjct: 130 -GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVE 187
Query: 340 TMQELIRSCPS 350
+ L+ S
Sbjct: 188 EAKLLVSQGAS 198
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 83/209 (39%), Gaps = 40/209 (19%)
Query: 130 TLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTA----LHEAV 185
T LH A GH +IV+ L L LG KD A LH A
Sbjct: 43 TALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDDAGWSPLHIAA 82
Query: 186 RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGR 245
+ ++VK L + ++ N+ G TPL+ AA + ++ +L +P
Sbjct: 83 SAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 141
Query: 246 TALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYY 305
TA+H AA + + ++I +LL T D +G PLHLA
Sbjct: 142 TAMHRAA------------AKGNLKMIHILLYYKASTNIQ--DTEGNTPLHLACDEERVE 187
Query: 306 VVKELLKADISAAYKPDNEGKIPLHLAAG 334
K LL + ++ Y + E K PL +A G
Sbjct: 188 EAK-LLVSQGASIYIENKEEKTPLQVAKG 215
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 128 GETLLHIAARHGHYDIVKVLI---AECKKPHQN-----------NPEEGVAAARLMLGTT 173
G + LHIAA G +IVK L+ A+ +QN N E +A L G
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGAN 132
Query: 174 NEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAE 220
+AKD TA+H A + ++ +L + + E G TPL+LA +
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE-GNTPLHLACD 182
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D GW PLHLAA G+ +V+ LLK AD++A D+ G PL
Sbjct: 30 VRILM--ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV---DHAGMTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
LAA G ++ L+++ + D G H AA G VE LL+N
Sbjct: 85 RLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+A G T LH+AA +GH +IV+VL+ +N + + + A T L A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLL-------KNGAD---------VNAVDHAGMTPLRLA 87
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMG 244
+ +++V++L K +++ + E G TPL+LAA G+ +++E +L G
Sbjct: 88 ALFGHLEIVEVLLKNGADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 245 RTAL 248
+TA
Sbjct: 147 KTAF 150
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 40/180 (22%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G+ LL AAR G D V++L+A G A+D T LH
Sbjct: 15 GKKLLE-AARAGRDDEVRILMAN--------------------GADVNAEDASGWTPLHL 53
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
A +++V++L K +++ + AG TPL LAA G+ +++E +L +
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G T LH AA + EI++VLL++ G D+ G ++ GN
Sbjct: 113 GHTPLHLAAMFGHL------------EIVEVLLKN--GADVNAQDKFGKTAFDISIDNGN 158
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
GRT LH AA + E++K+LL + G D+ G PLHLAA G+
Sbjct: 2 GRTPLHLAARNGHL------------EVVKLLLEA--GADVNAKDKNGRTPLHLAARNGH 47
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRS 347
VVK LL+A K D G+ PLHLAA G ++ L+ +
Sbjct: 48 LEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 290 QGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCP 349
G PLHLAA G+ VVK LL+A K D G+ PLHLAA G ++ L+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 350 SSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
+ D G H AA +G V+ LLE
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 25/108 (23%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AAR+GH ++VK+L+ G AKD T LH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--------------------GADVNAKDKNGRTPLHL 41
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
A R ++VVK+L + +++ ++ G TPL+LAA G+ +V++ +L
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 325 GKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSL 384
G+ PLHLAA G ++ L+ + + D G H AA +G V+ LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 385 GNLMNEKNYDGNTPL 399
G +N K+ +G TPL
Sbjct: 58 GADVNAKDKNGRTPL 72
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA +G+ +V+ LLK AD++A D G PL
Sbjct: 30 VRILM--ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL---DFSGSTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
HLAA +G ++ L++ + D G H AA +G VE LL+
Sbjct: 85 HLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+T LH+AAR GH +IV+VL+ +N + + + + T LH A +
Sbjct: 47 GDTPLHLAARVGHLEIVEVLL-------KNGAD---------VNALDFSGSTPLHLAAKR 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ D + G TPL+LAA+ G+ +++E +L G+TA
Sbjct: 91 GHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 248 L 248
Sbjct: 150 F 150
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA+ G+ +V+ LLK AD+ A+ D G PL
Sbjct: 30 VRILM--ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS---DVFGYTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
HLAA G ++ L+++ + +D G H AA G VE LL++
Sbjct: 85 HLAAYWGHLEIVEVLLKN-GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 313 ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSR 372
AD++AA DN G PLHLAA G ++ L++ + + D G+ H AA+ G
Sbjct: 38 ADVNAA---DNTGTTPLHLAAYSGHLEIVEVLLKH-GADVDASDVFGYTPLHLAAYWGHL 93
Query: 373 RTVEFLLENPSLGNLMNEKNYDGNTPL 399
VE LL+N G +N + DG TPL
Sbjct: 94 EIVEVLLKN---GADVNAMDSDGMTPL 117
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 25/129 (19%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----T 179
A+ G T LH+AA GH +IV+VL+ G +A D T
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKH--------------------GADVDASDVFGYT 82
Query: 180 ALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVD 239
LH A + +++V++L K +++ + G TPL+LAA+ GY +++E +L
Sbjct: 83 PLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 240 HGPMGRTAL 248
G+TA
Sbjct: 142 QDKFGKTAF 150
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 19/131 (14%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA G D + +++ + GRT LH AA + EI++VLLR
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHL------------EIVEVLLR 56
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGK 335
+ G D G PLHLAA LG+ +V+ LLK AD++A D G PL+LAA
Sbjct: 57 N--GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK---DATGITPLYLAAYW 111
Query: 336 GRAYTMQELIR 346
G ++ L++
Sbjct: 112 GHLEIVEVLLK 122
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+AA GH +IV+VL+ +N + + + T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-------RNGAD---------VNAVDTNGTTPLHLAASL 78
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ + G TPLYLAA G+ +++E +L G+TA
Sbjct: 79 GHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 248 L 248
Sbjct: 138 F 138
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 31/125 (24%)
Query: 114 LEMCPILLLKA------NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAAR 167
LE+ +LL + G T LH+AA GH +IV+VL
Sbjct: 48 LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL-------------------- 87
Query: 168 LMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGY 223
L G AKD T L+ A + +++V++L K +++ ++ G+T ++ + G
Sbjct: 88 LKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDIGN 146
Query: 224 KDVME 228
+D+ E
Sbjct: 147 EDLAE 151
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 82/210 (39%), Gaps = 37/210 (17%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPV 238
TALH+A + VD+VK L + N++ NE G PL+ AA GY D+ E ++S
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREI-------IKVLLRSSKGTQTTKPDQQG 291
G T L A R+ +I +++LR D +
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR----------DARQ 183
Query: 292 WLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSS 351
WL + H+ + K G LH+AA KG ++ LI++
Sbjct: 184 WLN---SGHINDVRHAK---------------SGGTALHVAAAKGYTEVLKLLIQA-RYD 224
Query: 352 CELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
+ D GW H AAH G L+EN
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 92/242 (38%), Gaps = 61/242 (25%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G TALH A + +++K L+ + G +PD +GW+PLH AA G
Sbjct: 73 GLTALHQACIDDNV------------DMVKFLVEN--GANINQPDNEGWIPLHAAASCG- 117
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHL----------------------AAGKGRAYTM 341
Y + E L + + ++EG PL + AA K M
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177
Query: 342 QELIRSCPSSCELVDDR----GWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNT 397
R +S + D R G H AA G ++ L++ N+ K+YDG T
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI---KDYDGWT 234
Query: 398 PLLEHAVSGSFIKSFVCHPKVDRL----AFNHQNNSAEDIIRSKKVLIWENEESFLGCLA 453
PL HA + + K C V+ L A N +A D+ +E LG L
Sbjct: 235 PL--HA-AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA----------DEDILGYLE 281
Query: 454 RL 455
L
Sbjct: 282 EL 283
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 77/206 (37%), Gaps = 58/206 (28%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183
AN G T LH A + D+VK L+ +Q + E + LH
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI----------------PLHA 112
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYL----------------------AAER 221
A +D+ + L + ++ N G+TPL + AA +
Sbjct: 113 AASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171
Query: 222 G-----YKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLL 276
+D + + S + V H G TALH AA + YT E++K+L+
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT------------EVLKLLI 219
Query: 277 RSSKGTQTTKPDQQGWLPLHLAAHLG 302
++ D GW PLH AAH G
Sbjct: 220 QARYDVNI--KDYDGWTPLHAAAHWG 243
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 30/233 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L +AV+ VD+V+ L + N+++ E G TPL+ A + +D++E +L PV
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T AA +++K+ L SKG + D G+ AA
Sbjct: 69 KKNGATPFLLAAIAGSV------------KLLKLFL--SKGADVNECDFYGFTAFMEAAV 114
Query: 301 LGNYYVVKELLK----ADISAAYKPDNE-----GKIPLHLAAGKGRAYTMQELIRSCPSS 351
G +K L K ++ K D E G L AA KG ++ L+ +
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 352 CELVDDRGWNVFHFAAHSGSRRTVE----FLLENPSLGNLMNEKNYDGNTPLL 400
D+ G N A S VE LL++ + N+ E+ G TPL+
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER---GKTPLI 224
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 30/235 (12%)
Query: 179 TALHEAVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES 236
T LH AV+ ++ D+V++L + DP L + G TP LAA G +++ LS
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLR---KKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 237 PVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQ-----G 291
+ G TA AA + + R V LR + TK DQ+ G
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRG----ANVNLR-----RKTKEDQERLRKGG 148
Query: 292 WLPLHLAAHLGNYYVVKELLK---ADISAAYKPDNEGK---IPLHLAAGKGRAYTMQELI 345
L AA G+ V+K LL AD++A DN G+ I L++ + L+
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNAC---DNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 346 RSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLL 400
+ + +RG A V+ LLE + +N+ + DG T LL
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALL 258
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD++A D G PL
Sbjct: 30 VRILM--ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIXGSTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
HLAA G ++ L++ + VD G H AA G VE LL++
Sbjct: 85 HLAALIGHLEIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+A G T LH+AA +GH +IV+VL+ + + T LH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD----------------VNAIDIXGSTPLHLA 87
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMG 244
+++V++L K +++ + G+TPL+LAA G+ +++E +L G
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 245 RTAL 248
+TA
Sbjct: 147 KTAF 150
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G PLHLAA LG+ +V+ LLK AD++A DN G PL
Sbjct: 30 VRILM--ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE---DNFGITPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HLAA +G ++ L++ + D G F + +G+ E L
Sbjct: 85 HLAAIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ +E G TPL+LAA+ G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA R + EI++VLL+ G D+ G ++
Sbjct: 77 DNFGITPLHLAAIRGHL------------EIVEVLLK--HGADVNAQDKFGKTAFDISID 122
Query: 301 LGN 303
GN
Sbjct: 123 NGN 125
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+AA+ GH +IV+VL+ K N E+ T LH A
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLL---KYGADVNAEDNFGI-------------TPLHLAAIR 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
+++V++L K +++ ++ G+T ++ + G +D+ E
Sbjct: 91 GHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAE 130
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD++A D G PL
Sbjct: 30 VRILM--ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIMGSTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
HLAA G ++ L++ + VD G H AA G VE LL++
Sbjct: 85 HLAALIGHLEIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+A G T LH+AA +GH +IV+VL+ V A +M T LH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD---------VNAIDIM-------GSTPLHLA 87
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMG 244
+++V++L K +++ + G+TPL+LAA G+ +++E +L G
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 245 RTAL 248
+TA
Sbjct: 147 KTAF 150
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D++G PLHLAA + +V+ LLK AD++A DN+G PL
Sbjct: 30 VRILM--ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA---HDNDGSTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HLAA G ++ L++ + D G F + +G+ E L
Sbjct: 85 HLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ + + G TPL+LAA+ + +++E +L H
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
G T LH AA + EI++VLL+ G D+ G ++
Sbjct: 77 DNDGSTPLHLAALFGHL------------EIVEVLLK--HGADVNAQDKFGKTAFDISID 122
Query: 301 LGNYYVVKELLK 312
GN + + L K
Sbjct: 123 NGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 127 KGETLLHIAARHGHYDIVKVLIAECK--KPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
KG T LH+AA + H +IV+VL+ H N+ T LH A
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS------------------TPLHLA 87
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
+ +++V++L K +++ ++ G+T ++ + G +D+ E
Sbjct: 88 ALFGHLEIVEVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAE 130
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 92/227 (40%), Gaps = 41/227 (18%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G++ LH+A H + +I + K G A L N + T LH AV
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVK---------GDLA---FLNFQNNLQQTPLHLAVIT 55
Query: 188 NQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM-- 243
NQ ++ + L DP L + G TPL+LA E+G + + +C +P H +
Sbjct: 56 NQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Query: 244 ----GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA 299
G T LH A+ Y I+++L+ +P G LHLA
Sbjct: 113 TNYNGHTCLHLASIHGYL------------GIVELLVSLGADVNAQEP-CNGRTALHLAV 159
Query: 300 HLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQEL 344
L N +V LLK AD++ + +G P L G+ Q+L
Sbjct: 160 DLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPSTRIQQQL 203
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVR 186
+G T LH+A G V VL C PH ++ +L TN T LH A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHS----------ILKATNYNGHTCLHLASI 126
Query: 187 YNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
+ + +V++L +++ G T L+LA + D++ +L
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 121 LLKA-NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDT 179
+LKA N G T LH+A+ HG+ IV++L++ + P G T
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------RT 153
Query: 180 ALHEAVRYNQVDVVKMLTK 198
ALH AV D+V +L K
Sbjct: 154 ALHLAVDLQNPDLVSLLLK 172
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCP---- 349
PLHLA + + LL A + D G PLHLA +G ++ L +SC
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 350 -SSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMN-EKNYDGNTPL 399
S + + G H A+ G VE L+ SLG +N ++ +G T L
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLV---SLGADVNAQEPCNGRTAL 155
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 192 VVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251
V+ L + L+ ++ GET L+LAA D + +L GRT LHAA
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
+ + ++LLR ++ T G PL LAA L +V++L+
Sbjct: 92 VAADAM------------GVFQILLR-NRATNLNARMHDGTTPLILAARLAIEGMVEDLI 138
Query: 312 --KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHS 369
ADI+AA DN GK LH AA + L+ ++ + DD+ AA
Sbjct: 139 TADADINAA---DNSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAARE 194
Query: 370 GSRRTVEFLLEN 381
GS + LL+N
Sbjct: 195 GSYEASKALLDN 206
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 40/189 (21%)
Query: 128 GETLLHIAARHGHYDIVKVLI-AECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVR 186
GET LH+AAR D K L+ A Q+N T LH AV
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGR-----------------TPLHAAVA 93
Query: 187 YNQVDVVKMLTK-EDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGP-MG 244
+ + V ++L + NL+ ++ G TPL LAA + ++ED++ T ++ ++ G
Sbjct: 94 ADAMGVFQILLRNRATNLNARMHD-GTTPLILAARLAIEGMVEDLI-TADADINAADNSG 151
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLL--RSSKGTQTTKPDQQGWLPLHLAAHLG 302
+TALH AA T E + +LL +++ Q D + PL LAA G
Sbjct: 152 KTALHWAAAVNNT------------EAVNILLMHHANRDAQ----DDKDETPLFLAAREG 195
Query: 303 NYYVVKELL 311
+Y K LL
Sbjct: 196 SYEASKALL 204
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 41/227 (18%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G++ LH+A H + +I + K L N + T LH AV
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVK------------GDLAFLNFQNNLQQTPLHLAVIT 52
Query: 188 NQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM-- 243
NQ ++ + L DP L + G TPL+LA E+G + + +C +P H +
Sbjct: 53 NQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 109
Query: 244 ----GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA 299
G T LH A+ Y I+++L+ +P G LHLA
Sbjct: 110 TNYNGHTCLHLASIHGYL------------GIVELLVSLGADVNAQEPC-NGRTALHLAV 156
Query: 300 HLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQEL 344
L N +V LLK AD++ + +G P L G+ Q+L
Sbjct: 157 DLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPSTRIQQQL 200
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVR 186
+G T LH+A G V VL C PH ++ +L TN T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHS----------ILKATNYNGHTCLHLASI 123
Query: 187 YNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
+ + +V++L +++ G T L+LA + D++ +L
Sbjct: 124 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 121 LLKA-NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDT 179
+LKA N G T LH+A+ HG+ IV++L++ + P G T
Sbjct: 106 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------RT 150
Query: 180 ALHEAVRYNQVDVVKMLTK 198
ALH AV D+V +L K
Sbjct: 151 ALHLAVDLQNPDLVSLLLK 169
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCP---- 349
PLHLA + + LL A + D G PLHLA +G ++ L +SC
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 350 -SSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMN-EKNYDGNTPL 399
S + + G H A+ G VE L+ SLG +N ++ +G T L
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLV---SLGADVNAQEPCNGRTAL 152
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD++A+ D+ G+ PL
Sbjct: 30 VRILM--ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS---DSWGRTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HLAA G + E++ + D G F + +G+ E L
Sbjct: 85 HLAATVGH-LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++AG TPL+LAA+RG+ +++E +L
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 241 GPMGRTALHAAA 252
GRT LH AA
Sbjct: 77 DSWGRTPLHLAA 88
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+ LL A R G D V++L+A + ++A T LH A +
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGAD----------------VNAMDDAGVTPLHLAAKR 57
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ ++ G TPL+LAA G+ +++E +L G+TA
Sbjct: 58 GHLEIVEVLLKHGADVNA-SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 248 L 248
Sbjct: 117 F 117
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+AA+ GH +IV+VL+ H + + R T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-----KHGADVNASDSWGR-----------TPLHLAATV 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
+++V++L + +++ ++ G+T ++ + G +D+ E
Sbjct: 91 GHLEIVEVLLEYGADVNA-QDKFGKTAFDISIDNGNEDLAE 130
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEA-GETPLYLAAERGYKDVMEDILSTCESPVD 239
L EA R Q D V++LT ++ +AN+ G TPL+LAA G+ +++E +L
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 240 HGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA 299
G GRT LH AA+ ++ EI++VLL+ G D+ G ++
Sbjct: 76 TGNTGRTPLHLAAWADHL------------EIVEVLLK--HGADVNAQDKFGKTAFDISI 121
Query: 300 HLGN 303
GN
Sbjct: 122 DNGN 125
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 273 KVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLH 330
+V + ++ G D G PLHLAA LG+ +V+ LLK AD++A N G+ PLH
Sbjct: 29 EVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT---GNTGRTPLH 85
Query: 331 LAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
LAA ++ L++ + D G F + +G+ E L
Sbjct: 86 LAAWADHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH+AA GH +IV+VL+ +N + + T T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL-------KNGAD---------VNATGNTGRTPLHLAAWA 90
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
+ +++V++L K +++ ++ G+T ++ + G +D+ E
Sbjct: 91 DHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAE 130
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 192 VVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251
V+ + +L + GET L+LAA D + +L MGRT LHAA
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
+ + + ++L+R ++ T G PL LAA L ++++L+
Sbjct: 66 VSADA------------QGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112
Query: 312 K--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHS 369
AD++A D+ GK LH AA L+++ ++ ++ ++R AA
Sbjct: 113 NSHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAARE 168
Query: 370 GSRRTVEFLLE 380
GS T + LL+
Sbjct: 169 GSYETAKVLLD 179
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 38/188 (20%)
Query: 128 GETLLHIAARHGHYDIVKVLI-AECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVR 186
GET LH+AAR+ D K L+ A Q+N +G T LH AV
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDN-----------MGR------TPLHAAVS 67
Query: 187 YNQVDVVKMLTKEDPNLSYDAN---EAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
+ V ++L + N + D + G TPL LAA + ++ED++++ +
Sbjct: 68 ADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G++ALH + + + VLL++ G + + PL LAA G+
Sbjct: 125 GKSALH------------WAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGS 170
Query: 304 YYVVKELL 311
Y K LL
Sbjct: 171 YETAKVLL 178
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G TALH AA + R D K LL +S D G PLH A
Sbjct: 25 GETALHLAA----------RYSRSD--AAKRLLEASADANIQ--DNMGRTPLHAAVSADA 70
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
V + L++ + ++G PL LAA +++LI S + VDD G +
Sbjct: 71 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSAL 129
Query: 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF 408
H+AA + LL+N + ++ N + TPL A GS+
Sbjct: 130 HWAAAVNNVDAAVVLLKNGANKDMQNNRE---ETPLFLAAREGSY 171
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 192 VVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251
V+ + +L + GET L+LAA D + +L MGRT LHAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
+ + + ++L+R ++ T G PL LAA L ++++L+
Sbjct: 98 VSADA------------QGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 312 K--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHS 369
AD++A D+ GK LH AA L+++ ++ ++ ++R AA
Sbjct: 145 NSHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAARE 200
Query: 370 GSRRTVEFLLE 380
GS T + LL+
Sbjct: 201 GSYETAKVLLD 211
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 38/188 (20%)
Query: 128 GETLLHIAARHGHYDIVKVLI-AECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVR 186
GET LH+AAR+ D K L+ A Q+N +G T LH AV
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDN-----------MGR------TPLHAAVS 99
Query: 187 YNQVDVVKMLTKEDPNLSYDAN---EAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
+ V ++L + N + D + G TPL LAA + ++ED++++ +
Sbjct: 100 ADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G++ALH + + + VLL++ G + + PL LAA G+
Sbjct: 157 GKSALH------------WAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGS 202
Query: 304 YYVVKELL 311
Y K LL
Sbjct: 203 YETAKVLL 210
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G TALH AA + R D K LL +S D G PLH A
Sbjct: 57 GETALHLAA----------RYSRSD--AAKRLLEASADANIQ--DNMGRTPLHAAVSADA 102
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
V + L++ + ++G PL LAA +++LI S + VDD G +
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSAL 161
Query: 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF 408
H+AA + LL+N + ++ N + TPL A GS+
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNRE---ETPLFLAAREGSY 203
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 192 VVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251
V+ + +L + GET L+LAA D + +L MGRT LHAA
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
+ + + ++L+R ++ T G PL LAA L ++++L+
Sbjct: 99 VSADA------------QGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLI 145
Query: 312 K--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHS 369
AD++A D+ GK LH AA L+++ ++ ++ ++R AA
Sbjct: 146 NSHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAARE 201
Query: 370 GSRRTVEFLLE 380
GS T + LL+
Sbjct: 202 GSYETAKVLLD 212
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
GET LH+AAR+ D K L+ E A A + + T LH AV
Sbjct: 58 GETALHLAARYSRSDAAKRLL------------EASADANIQ----DNMGRTPLHAAVSA 101
Query: 188 NQVDVVKMLTKEDPNLSYDAN---EAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMG 244
+ V ++L + N + D + G TPL LAA + ++ED++++ +G
Sbjct: 102 DAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 158
Query: 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNY 304
++ALH + + + VLL++ G + + PL LAA G+Y
Sbjct: 159 KSALH------------WAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSY 204
Query: 305 YVVKELL 311
K LL
Sbjct: 205 ETAKVLL 211
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G TALH AA + R D K LL +S D G PLH A
Sbjct: 58 GETALHLAA----------RYSRSD--AAKRLLEASADANIQ--DNMGRTPLHAAVSADA 103
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
V + L++ + ++G PL LAA +++LI S + VDD G +
Sbjct: 104 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSAL 162
Query: 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF 408
H+AA + LL+N + ++ N + TPL A GS+
Sbjct: 163 HWAAAVNNVDAAVVLLKNGANKDMQNNRE---ETPLFLAAREGSY 204
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 192 VVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251
V+ + +L + GET L+LAA D + +L MGRT LHAA
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
+ + + ++LLR ++ T G PL LAA L ++++L+
Sbjct: 63 VSADA------------QGVFQILLR-NRATDLDARMHDGTTPLILAARLALEGMLEDLI 109
Query: 312 K--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHS 369
AD++A D+ GK LH AA L+++ + ++ +++ AA
Sbjct: 110 NSHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNKEETPLFLAARE 165
Query: 370 GSRRTVEFLLEN 381
GS T + LL++
Sbjct: 166 GSYETAKVLLDH 177
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 42/190 (22%)
Query: 128 GETLLHIAARHGHYDIVKVLI-AECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVR 186
GET LH+AAR+ D K L+ A Q+N +G T LH AV
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDN-----------MGR------TPLHAAVS 64
Query: 187 YNQVDVVKMLTKEDPNLSYDAN---EAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
+ V ++L + N + D + G TPL LAA + ++ED++++ +
Sbjct: 65 ADAQGVFQILLR---NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR--SSKGTQTTKPDQQGWLPLHLAAHL 301
G++ALH + + + VLL+ ++K Q K + PL LAA
Sbjct: 122 GKSALH------------WAAAVNNVDAAVVLLKNGANKDMQNNKEET----PLFLAARE 165
Query: 302 GNYYVVKELL 311
G+Y K LL
Sbjct: 166 GSYETAKVLL 175
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G TALH AA + R D K LL +S D G PLH A
Sbjct: 22 GETALHLAA----------RYSRSD--AAKRLLEASADAXI--QDNMGRTPLHAAVSADA 67
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
V + LL+ + ++G PL LAA +++LI S + VDD G +
Sbjct: 68 QGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSH-ADVNAVDDLGKSAL 126
Query: 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF 408
H+AA + LL+N + ++ N K TPL A GS+
Sbjct: 127 HWAAAVNNVDAAVVLLKNGANKDMQNNKE---ETPLFLAAREGSY 168
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 20/170 (11%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA RG + + +L + GRTAL + EI + LL
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-------------GNPEIARRLLL 58
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL--KADISAAYKPDNEGKIPLHLAAGK 335
+G D+ G+ +H AA G ++ LL +AD++ DNEG +PLHLAA +
Sbjct: 59 --RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI---EDNEGNLPLHLAAKE 113
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG 385
G ++ L++ S+ + +G A G V + N + G
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGG 163
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 158 NPEEGVAAARLMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213
NPE +A L+ G + KD +H+A R Q+D ++ L + +++ + NE G
Sbjct: 49 NPE--IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNE-GNL 105
Query: 214 PLYLAAERGYKDVMEDILSTCESPVDH 240
PL+LAA+ G+ V+E ++ S V H
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGH 132
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 110 VRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLM 169
VR+ L+ L + + G + LH A R G +V++LI + AR+
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI--------------MRGARI- 65
Query: 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMED 229
N DT LH A + D+V+ L + +++ NE G PL+ A G V ED
Sbjct: 66 -NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAED 123
Query: 230 ------ILSTC----ESPVD 239
++S C E PVD
Sbjct: 124 LVANGALVSICNKYGEMPVD 143
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 160 EEGVAAARLMLGTT----NEAKD---TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGE 212
E A RL L T N+ D + LH A R + VV+ML ++ N +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDD 73
Query: 213 TPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAF 253
TPL+LAA G++D+++ +L G LH A F
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 114
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 294 PLHLAAHLGNYYVVKELL--KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELI 345
PLHLAA G+ +V++LL KADI+A + G +PLH A G+ ++L+
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAV---NEHGNVPLHYACFWGQDQVAEDLV 125
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 302 GNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWN 361
GN V+ L + + D+ G PLH A +GR+ ++ LI + V +RG +
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDD 73
Query: 362 V-FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
H AA G R V+ LL+ + N +NE GN PL
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEH---GNVPL 109
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 287 PDQQGWL---PLHLAAHLGNYYVVKELLKADIS--AAYKPDNEGKIPLHLAAGKGRAYTM 341
P WL PLHLAA G++ + LL+A +S A K D + PLH+AA +G A +
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD---RTPLHMAASEGHANIV 83
Query: 342 QELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
+ L++ + D H+A + VE L++
Sbjct: 84 EVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L + D G +PL+LAA+ G+ E +L S
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
+ RT LH AA + I++VLL+ G D LH A
Sbjct: 64 TKVDRTPLHMAASEGHA------------NIVEVLLK--HGADVNAKDMLKMTALHWATE 109
Query: 301 LGNYYVVKELLK--ADI 315
+ VV+ L+K AD+
Sbjct: 110 HNHQEVVELLIKYGADV 126
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 128 GETLLHIAARHGHYDIVKVLIAEC----------KKPHQNNPEEG---VAAARLMLGTTN 174
G + LH+AA++GH+ +VL+ + P EG + L G
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 175 EAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
AKD TALH A +N +VV++L K ++ + ++ +T ++ + G +D+ E
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAE 150
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 317 AAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPS-SCELVDDRGWNVFHFAAHSGSRRTV 375
A + D G PLHLAA G T + L+R+ S DR H AA G V
Sbjct: 26 APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIV 83
Query: 376 EFLLEN 381
E LL++
Sbjct: 84 EVLLKH 89
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD++A+ D G+ PL
Sbjct: 30 VRILM--ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS---DIWGRTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HLAA G + E++ + D G F + +G+ E L
Sbjct: 85 HLAATVGH-LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++AG TPL+LAA+RG+ +++E +L
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 241 GPMGRTALHAAA 252
GRT LH AA
Sbjct: 77 DIWGRTPLHLAA 88
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+ LL A R G D V++L+A + ++A T LH A +
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGAD----------------VNAMDDAGVTPLHLAAKR 57
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ ++ G TPL+LAA G+ +++E +L G+TA
Sbjct: 58 GHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 248 L 248
Sbjct: 117 F 117
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 25/105 (23%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AA+ GH +IV+VL+ G A D T LH
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKH--------------------GADVNASDIWGRTPLHL 86
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
A +++V++L + +++ ++ G+T ++ + G +D+ E
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 130
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++AG TPL+LAA+RG+ +++E +L
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 241 GPMGRTALHAAA 252
GRT LH AA
Sbjct: 77 DIWGRTPLHLAA 88
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D G PLHLAA G+ +V+ LLK AD++A D G+ PL
Sbjct: 30 VRILM--ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR---DIWGRTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HLAA G + E++ + D G F + +G+ E L
Sbjct: 85 HLAATVGH-LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+ LL A R G D V++L+A + ++A T LH A +
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGAD----------------VNAMDDAGVTPLHLAAKR 57
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+++V++L K +++ + G TPL+LAA G+ +++E +L G+TA
Sbjct: 58 GHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 248 L 248
Sbjct: 117 F 117
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 25/105 (23%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G T LH+AA+ GH +IV+VL+ G A+D T LH
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKH--------------------GADVNARDIWGRTPLHL 86
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
A +++V++L + +++ ++ G+T ++ + G +D+ E
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 130
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 110 VRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLM 169
VR+ L+ L + + G + LH A R G +V++LI + AR+
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI--------------MRGARI- 60
Query: 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMED 229
N DT LH A + D+V+ L + +++ NE G PL+ A G V ED
Sbjct: 61 -NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAED 118
Query: 230 ------ILSTC----ESPVD 239
++S C E PVD
Sbjct: 119 LVANGALVSICNKYGEMPVD 138
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 160 EEGVAAARLMLGTT----NEAKD---TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGE 212
E A RL L T N+ D + LH A R + VV+ML ++ N +
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDD 68
Query: 213 TPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAF 253
TPL+LAA G++D+++ +L G LH A F
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 109
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 255 EYTLQTYYYFFRKDREII--KVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL- 311
++ ++ R+ R + +++R ++ + D PLHLAA G+ +V++LL
Sbjct: 32 DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT---PLHLAASHGHRDIVQKLLQ 88
Query: 312 -KADISAAYKPDNEGKIPLHLAAGKGRAYTMQELI 345
KADI+A + G +PLH A G+ ++L+
Sbjct: 89 YKADINAV---NEHGNVPLHYACFWGQDQVAEDLV 120
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 302 GNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWN 361
GN V+ L + + D+ G PLH A +GR+ ++ LI V +RG +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN--VMNRGDD 68
Query: 362 V-FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399
H AA G R V+ LL+ + N +NE GN PL
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEH---GNVPL 104
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 20/170 (11%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA RG + + +L + GRTAL + EI + LL
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-------------GNPEIARRLLL 58
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL--KADISAAYKPDNEGKIPLHLAAGK 335
+G D+ G+ +H AA G ++ LL +AD++ DNEG +PLHLAA +
Sbjct: 59 --RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI---EDNEGNLPLHLAAKE 113
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG 385
G ++ L++ S+ + +G A G V + N + G
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGG 163
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 158 NPEEGVAAARLMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213
NPE +A L+ G + KD +H+A R +D ++ L + +++ + NE G
Sbjct: 49 NPE--IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNE-GNL 105
Query: 214 PLYLAAERGYKDVMEDILSTCESPVDH 240
PL+LAA+ G+ V+E ++ S V H
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGH 132
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 353 ELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF--IK 410
+L D G+ V H AA +G T++ LLEN + +N ++ +GN PL A G ++
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQA---DVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 411 SFVCHPKVDRLAFNHQNNSAEDIIR 435
V H + NH+ ++A D+ R
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%)
Query: 167 RLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDV 226
RL L N T LH AV + ++V++L +L+ G TPL+LA E V
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 227 MEDILSTCESPVDHGPMGRTALHAAAFR 254
+E +L P GRT L +A R
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 74/223 (33%), Gaps = 54/223 (24%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+T LH+A H H + L+ G +A L N+ TALH A
Sbjct: 9 GDTALHLAVIHQHEPFLDFLL-------------GFSAGHEYLDLQNDLGQTALHLAAIL 55
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAE------------------RGYKDVMED 229
+ V+ L + A G T L+LA R D
Sbjct: 56 GEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 230 ILSTCESPVDHGPMG------------------RTALHAAAFREYTLQTYYYFFRKDREI 271
C H P R L A + +T + KD E+
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT-PLHVAVIHKDAEM 173
Query: 272 IKVLLRSSKGTQTTKPDQQ-GWLPLHLAAHLGNYYVVKELLKA 313
++ LLR + G KP+ G PLHLA V++ LLKA
Sbjct: 174 VR-LLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%)
Query: 167 RLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDV 226
RL L N T LH AV + ++V++L +L+ G TPL+LA E V
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 227 MEDILSTCESPVDHGPMGRTALHAAAFR 254
+E +L P GRT L +A R
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 74/223 (33%), Gaps = 54/223 (24%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+T LH+A H H + L+ G +A L N+ TALH A
Sbjct: 9 GDTALHLAVIHQHEPFLDFLL-------------GFSAGHEYLDLQNDLGQTALHLAAIL 55
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAE------------------RGYKDVMED 229
+ V+ L + A G T L+LA R D
Sbjct: 56 GEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 230 ILSTCESPVDHGPMG------------------RTALHAAAFREYTLQTYYYFFRKDREI 271
C H P R L A + +T + KD E+
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT-PLHVAVIHKDAEM 173
Query: 272 IKVLLRSSKGTQTTKPDQQ-GWLPLHLAAHLGNYYVVKELLKA 313
++ LLR + G KP+ G PLHLA V++ LLKA
Sbjct: 174 VR-LLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 175 EAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTC 234
E+ D LHEA + + ++ ++ ++AG T LY A G+KD++E + +
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEXLFTQP 129
Query: 235 ESPVDH-GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQT 284
++ +G TALHAAA++ Y +I+++LL +KG +T
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYA------------DIVQLLL--AKGART 166
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 167 RLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDA-NEAGETPLYLAAERGYKD 225
R+ + ++A TAL+ A D+V+ L + PN+ + N+ G+T L+ AA +GY D
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYAD 154
Query: 226 VMEDILS 232
+++ +L+
Sbjct: 155 IVQLLLA 161
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 107 ENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVA 164
++ V + I L + N G+T LH AA G+ DIV++L+A+ + N E+ +A
Sbjct: 119 KDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T L+ A GH DIV+ L Q N E L N+ DTALH A
Sbjct: 106 GSTALYWACHGGHKDIVEXLFT------QPNIE---------LNQQNKLGDTALHAAAWK 150
Query: 188 NQVDVVKML 196
D+V++L
Sbjct: 151 GYADIVQLL 159
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 19/191 (9%)
Query: 192 VVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251
V+ + +L + G T L+LAA D + +L MGRT LHAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
+ + + ++L+R ++ T G PL LAA L ++++L+
Sbjct: 98 VSADA------------QGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 312 K--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHS 369
AD++A D+ GK LH AA L+++ + ++ ++R AA
Sbjct: 145 NSHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAARE 200
Query: 370 GSRRTVEFLLE 380
GS T + LL+
Sbjct: 201 GSYETAKVLLD 211
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G TALH AA + R D K LL +S D G PLH A
Sbjct: 57 GATALHLAA----------AYSRSD--AAKRLLEASADANIQ--DNMGRTPLHAAVSADA 102
Query: 304 YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363
V + L++ + ++G PL LAA +++LI S + VDD G +
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSAL 161
Query: 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF 408
H+AA + LL+N + ++ N + TPL A GS+
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNRE---ETPLFLAAREGSY 203
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 20/170 (11%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA RG + + +L + GRTAL + EI + LL
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-------------GNPEIARRLLL 58
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL--KADISAAYKPDNEGKIPLHLAAGK 335
+G D+ G+ +H AA G ++ LL +AD++ DNEG +PLHLAA +
Sbjct: 59 --RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI---EDNEGNLPLHLAAKE 113
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG 385
G ++ L++ S+ + +G A G V + N + G
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGG 163
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 158 NPEEGVAAARLMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213
NPE +A L+ G + KD +H+A R +D ++ L + +++ + NE G
Sbjct: 49 NPE--IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNL 105
Query: 214 PLYLAAERGYKDVMEDILSTCESPVDH 240
PL+LAA+ G+ V+E ++ S V H
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGH 132
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 290 QGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCP 349
+G LH AA + N +VK L+ S K D +GK P+ LAA +GR + LI+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG- 336
Query: 350 SSCELVD 356
+S E VD
Sbjct: 337 ASVEAVD 343
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVM 227
TALH A + + +VK L E + +E G+TP+ LAA+ G +V+
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
GRTALH Y Q + I+K L+ KG+ K D+ G P+ LAA G
Sbjct: 279 GRTALH------YAAQV------SNXPIVKYLV-GEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 304 YYVVKELLKADIS 316
VV L++ S
Sbjct: 326 IEVVXYLIQQGAS 338
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 124 ANAKGETLLHIAARHGHYDIVKVLI--AECKKPHQNNPEEGVAAARLMLGTTNEAKDTAL 181
A++ G T LH + H ++ +V+ L+ CK QN + +ML TAL
Sbjct: 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA----GYSPIML--------TAL 154
Query: 182 HEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVD-H 240
+ ++ V L + N++ A++AG+T L LA G DV++ +L+ CE+ V+
Sbjct: 155 ATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQ 212
Query: 241 GPMGRTALHAAA 252
G TAL A
Sbjct: 213 DDDGSTALMCAC 224
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 20/93 (21%)
Query: 123 KANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAA------------ARLML 170
KA+ G+T L +A HG D+VK L+A C+ ++G A A L+L
Sbjct: 178 KASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Query: 171 GT-------TNEAKDTALHEAVRYNQVDVVKML 196
T+ TAL A+ Q ++ ML
Sbjct: 237 AVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA RG + + +L + GRTAL + EI + LL
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-------------GNPEIARRLLL 58
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL--KADISAAYKPDNEGKIPLHLAAGK 335
+G D+ G+ +H AA G ++ LL +AD++ DNEG +PLHLAA +
Sbjct: 59 --RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI---EDNEGNLPLHLAAKE 113
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPS 383
G ++ L++ S+ + +G A G V + N +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 158 NPEEGVAAARLMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213
NPE +A L+ G + KD +H+A R +D ++ L + +++ + NE G
Sbjct: 49 NPE--IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNL 105
Query: 214 PLYLAAERGYKDVMEDILSTCESPVDH 240
PL+LAA+ G+ V+E ++ S V H
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGH 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
N +GETLLHIA+ G V+ L+ P+ + A T LHEA
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPN----------------VKDHAGWTPLHEA 50
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILS 232
+ + VV++L + L ++PL+ AA+ G+ D+++ +LS
Sbjct: 51 CNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH A HGH +V++L+ + ++ TT D+ LH+A +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH----------------KALVNTTGYQNDSPLHDAAKN 86
Query: 188 NQVDVVKMLTKEDPNLSYDA 207
VD+VK+L LSY A
Sbjct: 87 GHVDIVKLL------LSYGA 100
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G T LH A+ + D ++ LL++ G+ D GW PLH A + G+
Sbjct: 10 GETLLHIASIK------------GDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGH 55
Query: 304 YYVVKELL--KADI-SAAYKPDNEGKIPLHLAAGKGRAYTMQELI 345
VV+ LL KA + + Y+ D+ PLH AA G ++ L+
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDS----PLHDAAKNGHVDIVKLLL 96
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 358 RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIKSFVCHPK 417
RG + H A+ G +VE+LL+N G+ N K++ G TPL E G H K
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQN---GSDPNVKDHAGWTPLHEACNHG--------HLK 57
Query: 418 VDRLAFNHQ 426
V L H+
Sbjct: 58 VVELLLQHK 66
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 260 TYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA-----HLGNYYVVK----EL 310
T Y + + RE+++ G +PD++ LH AA L YY+ K +
Sbjct: 17 TQYGIYERCRELVEA------GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 311 LKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR--SCPSSCELVDDRGWNVFHFAAH 368
L D+++ PLH A +G + +L++ + PS L+D G + H AA
Sbjct: 71 LGGDLNST---------PLHWATRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQ 118
Query: 369 SGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHA 403
G V +L+ ++M++ +G TPL+ A
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQ---NGMTPLMWAA 150
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 24/118 (20%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIA---ECKKPHQNNPEEGVAAA---------RLMLGT 172
+ +G + +H+AA+ GH IV LIA + QN + AA RL+L T
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL-T 164
Query: 173 TNEA--------KDTALHEAVRYNQVDVVKMLTKEDPNLSYDA-NEAGETPLYLAAER 221
N + K+TALH AV V+ +L + N+ DA N GE+ L LA +R
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAKQR 220
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPV 238
T LH A N++D+VK + + + TPL+ A +G+ ++ ++ P
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLA 298
G + +H AA +T I+ L+ +KG DQ G PL A
Sbjct: 104 LIDGEGCSCIHLAAQFGHT------------SIVAYLI--AKGQDVDMMDQNGMTPLMWA 149
Query: 299 AH 300
A+
Sbjct: 150 AY 151
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 130 TLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQ 189
TLLH AA + D+VK I++ Q LG + T LH A R
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQ-------------LG--GDLNSTPLHWATRQGH 88
Query: 190 VDVVKMLTK--EDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+ +V L K DP+L + G + ++LAA+ G+ ++ +++ + G T
Sbjct: 89 LSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 248 LHAAAFREYTL 258
L AA+R +++
Sbjct: 146 LMWAAYRTHSV 156
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 53/158 (33%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ +E G TPLYLA G+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGH----------------- 59
Query: 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300
EI++VLL++ G D G+ PLHLAA
Sbjct: 60 ----------------------------LEIVEVLLKN--GADVNAVDAIGFTPLHLAAF 89
Query: 301 LGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKG 336
+G+ + + LLK AD++A D GK ++ G G
Sbjct: 90 IGHLEIAEVLLKHGADVNAQ---DKFGKTAFDISIGNG 124
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G PL+LA G+ +V+ LLK AD++A D G PL
Sbjct: 30 VRILM--ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV---DAIGFTPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HLAA G + L++ + D G F + +G+ E L
Sbjct: 85 HLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 26/125 (20%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD----TALHE 183
G+ LL AAR G D V++L+A G AKD T L+
Sbjct: 15 GKKLLE-AARAGQDDEVRILMAN--------------------GADVNAKDEYGLTPLYL 53
Query: 184 AVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM 243
A + +++V++L K +++ + G TPL+LAA G+ ++ E +L
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Query: 244 GRTAL 248
G+TA
Sbjct: 113 GKTAF 117
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN 303
G T LH AA + E +K LL SKG + G PLHLAA G+
Sbjct: 9 GNTPLHNAAKNGHA------------EEVKKLL--SKGADVNARSKDGNTPLHLAAKNGH 54
Query: 304 YYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGW 360
+VK LL AD++A K +G P HLA G E+++ + V+ R W
Sbjct: 55 AEIVKLLLAKGADVNARSK---DGNTPEHLAKKNGH----HEIVKLLDAKGADVNARSW 106
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 211 GETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDRE 270
G TPL+ AA+ G+ + ++ +LS G T LH AA + E
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA------------E 56
Query: 271 IIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKEL--LKADISA 317
I+K+LL +KG + G P HLA G++ +VK L AD++A
Sbjct: 57 IVKLLL--AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G T LH AA++GH + VK L+++ + ++ +T LH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGAD----------------VNARSKDGNTPLHLAAKN 52
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
++VK+L + +++ + + G TP +LA + G+ ++++
Sbjct: 53 GHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVK 92
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILS 232
+T LH A + + VK L + +++ + + G TPL+LAA+ G+ ++++ +L+
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA 63
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 218 AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLR 277
AA RG + + +L + GRTAL + EI + LL
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-------------GNPEIARRLLL 58
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL--KADISAAYKPDNEGKIPLHLAAGK 335
+G D+ G +H AA G ++ LL +AD++ DNEG +PLHLAA +
Sbjct: 59 --RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI---EDNEGNLPLHLAAKE 113
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLG 385
G ++ L++ S+ + +G A G V + N + G
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGG 163
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 158 NPEEGVAAARLMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213
NPE +A L+ G + KD +H+A R +D ++ L + +++ + NE G
Sbjct: 49 NPE--IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNL 105
Query: 214 PLYLAAERGYKDVMEDILSTCESPVDH 240
PL+LAA+ G+ V+E ++ S V H
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGH 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 289 QQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSC 348
Q G PLH+AA G ++ LLK +A + ++ +PLHLA +G ++ L+ S
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGHFQVVKCLLDSN 142
Query: 349 --PSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAV 404
P+ +L G +A G V LL++ G +N N GNT L E +
Sbjct: 143 AKPNKKDL---SGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVI 194
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G + LH+AA HG D++ +L+ H N G N + LH A +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLK-----HGANA-----------GARNADQAVPLHLACQQ 129
Query: 188 NQVDVVKMLTKED--PNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGR 245
VVK L + PN + +G TPL A G+ +++ +L S G
Sbjct: 130 GHFQVVKCLLDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN 186
Query: 246 TALHAAAFREYTL 258
TALH A ++
Sbjct: 187 TALHEAVIEKHVF 199
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 270 EIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPL 329
++I +LL+ DQ +PLHLA G++ VVK LL ++ + K D G PL
Sbjct: 100 DLIPLLLKHGANAGARNADQA--VPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPL 156
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMN 389
A G + + L+ +S +++G H A VE LL + + ++N
Sbjct: 157 IYACSGGH-HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215
Query: 390 EK 391
++
Sbjct: 216 KR 217
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 324 EGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPS 383
+G PLH+AA GRA + L++ ++ D+ H A G + V+ LL++ +
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP-LHLACQQGHFQVVKCLLDSNA 143
Query: 384 LGNLMNEKNYDGNTPLLEHAVSGS---FIKSFVCHPKVDRLAFNHQNNSAEDIIRSKKVL 440
N+K+ GNTPL+ +A SG + + H + N N + + + K V
Sbjct: 144 KP---NKKDLSGNTPLI-YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 441 IWE 443
+ E
Sbjct: 200 VVE 202
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQ-----NNP--------EEGVAAARLMLG 171
NA LH+A + GH+ +VK L+ KP++ N P + A L G
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 172 ----TTNEAKDTALHEAVRYNQVDVVKML 196
+N +TALHEAV V VV++L
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVELL 204
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 175 EAKDTALHEAVRY---NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
++ +TALH AV + V ++L ++ N++ + N+ TPL++AAER + DVME +
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 232 STCESPVDHGPMGRTALHAAAFREYTLQTYYYF--FRKDREIIKV 274
+G+TALH AA + LQT + D II +
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGH-LQTCRLLLSYGSDPSIISL 311
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL--STC 234
K T LH A YN+V +V++L + ++ + ++ G PL+ A G+ +V E +L C
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 235 ESPVDHGPMGRTALHAAAFR 254
+ +D T LH AA +
Sbjct: 117 VNAMDLWQF--TPLHEAASK 134
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 120/313 (38%), Gaps = 85/313 (27%)
Query: 106 GENFVRVILEMCPILLLKANAK-------GETLLHIAARHGHYDIVKVLIAECKKPHQNN 158
G N VR++ LLL+ A G LH A +GHY++ ++L+
Sbjct: 67 GYNRVRIV-----QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-------- 113
Query: 159 PEEGVAAARLMLGTTNEAKD----TALHEAVRYNQVDVVKMLTKE--DPNL----SYDAN 208
G A D T LHEA N+V+V +L DP L A
Sbjct: 114 ------------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161
Query: 209 EAGETP---------------LYLAAERGYKDVMEDI---LSTCESPVDHGPMGRTALHA 250
+ TP L A E V + + + + P H TALH
Sbjct: 162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH----ETALHC 217
Query: 251 AAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKEL 310
A K +++ ++LLR KG + ++ PLH+AA + V++ L
Sbjct: 218 AVAS---------LHPKRKQVAELLLR--KGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Query: 311 LK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAH 368
K A ++A D+ G+ LH AA G T + L+ S S ++ +G+ AA
Sbjct: 267 HKHGAKMNAL---DSLGQTALHRAALAGHLQTCR-LLLSYGSDPSIISLQGFT----AAQ 318
Query: 369 SGSRRTVEFLLEN 381
G+ + L E+
Sbjct: 319 MGNEAVQQILSES 331
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 5/137 (3%)
Query: 298 AAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
AA GN + LL + D PLHLAAG R +Q L++ + D
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDK 89
Query: 358 RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHP 416
G H A G E LL++ + N M+ + TPL E A + S +
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF---TPLHEAASKNRVEVCSLLLSH 146
Query: 417 KVDRLAFNHQNNSAEDI 433
D N SA D+
Sbjct: 147 GADPTLVNCHGKSAVDM 163
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+A G + +H AAR G D +KVL+ E G L + +H A
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLV-----------EHGADVNAL-----DSTGSLPIHLA 116
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
+R VV L E DA +G TPL LA +RG +++M DIL
Sbjct: 117 IREGHSSVVSFLAPESDLHHRDA--SGLTPLELARQRGAQNLM-DIL 160
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 208 NEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRK 267
N G+T L + G V ++L SP G + +H AA R L T
Sbjct: 41 NRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAA-RTGFLDT------- 91
Query: 268 DREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKI 327
+KVL+ G D G LP+HLA G+ VV L A S + D G
Sbjct: 92 ----LKVLVE--HGADVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLT 143
Query: 328 PLHLAAGKGRAYTMQEL 344
PL LA +G M L
Sbjct: 144 PLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+A G + +H AAR G D +KVL+ E G L + +H A
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLV-----------EHGADVNAL-----DSTGSLPIHLA 114
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
+R VV L E DA +G TPL LA +RG +++M DIL
Sbjct: 115 IREGHSSVVSFLAPESDLHHRDA--SGLTPLELARQRGAQNLM-DIL 158
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 208 NEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRK 267
N G+T L + G V ++L SP G + +H AA R L T
Sbjct: 39 NRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAA-RTGFLDT------- 89
Query: 268 DREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKI 327
+KVL+ G D G LP+HLA G+ VV L A S + D G
Sbjct: 90 ----LKVLVE--HGADVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLT 141
Query: 328 PLHLAAGKGRAYTMQEL 344
PL LA +G M L
Sbjct: 142 PLELARQRGAQNLMDIL 158
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 222 GYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG 281
G D+++ I+ + P G TALH A +T EI+K L++ G
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT------------EIVKFLVQF--G 93
Query: 282 TQTTKPDQQGWLPLHLAAHLGNYYVVKELLKA 313
D GW PLH AA N V K L+++
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 131 LLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQV 190
LL ++ G +D+V+ +I E P N +EG+ TALH AV
Sbjct: 40 LLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGI---------------TALHNAVCAGHT 83
Query: 191 DVVKMLTKEDPNLSYDANEAGETPLYLAA 219
++VK L + N++ A+ G TPL+ AA
Sbjct: 84 EIVKFLVQFGVNVNA-ADSDGWTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 222 GYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG 281
G D+++ I+ + P G TALH A +T EI+K L++ G
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT------------EIVKFLVQF--G 93
Query: 282 TQTTKPDQQGWLPLHLAAHLGNYYVVKELLKA 313
D GW PLH AA N V K L+++
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 122 LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTAL 181
+K N LL ++ G +D+V+ +I E P N +EG+ TAL
Sbjct: 31 VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGI---------------TAL 74
Query: 182 HEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAA 219
H AV ++VK L + N++ A+ G TPL+ AA
Sbjct: 75 HNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAA 111
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 294 PLHLAAHL-----GNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSC 348
PL LA L G + +V+ ++ ++ P++EG LH A G ++ L++
Sbjct: 35 PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF- 92
Query: 349 PSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
+ D GW H AA + + +FL+E+
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
+TALH A YNQ D +K+L K L NEAGET L +A ++ +K+ E
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEE 276
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 126 AKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV 185
A G T LH AA + D +K+L+ R ++GT NEA +TAL A
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLK----------------GRALVGTVNEAGETALDIAR 267
Query: 186 RYNQVDVVKMLTK 198
+ + + ++L +
Sbjct: 268 KKHHKECEELLEQ 280
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 51/211 (24%)
Query: 126 AKGETLLHIAARHGHYDIVKVLIAECK----KPHQNNPEEGVAAARLMLGTTNEAKDTAL 181
A GET LHIAA + + + VL+ +P + EG TAL
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG---------------QTAL 79
Query: 182 HEAVRYNQVDVVKMLTKEDPNLSYDANEA------------GETPLYLAAERGYKDVMED 229
H AV V++V+ L ++S A + GE PL AA G ++++
Sbjct: 80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139
Query: 230 ILSTCESPVDHGPMGRTALHAAAF---REYTLQTYYYFFRKDREIIKVLLRSSKGTQTTK 286
++ +G T LH + + Q Y LL S G K
Sbjct: 140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN------------LLLSYDGGDHLK 187
Query: 287 -----PDQQGWLPLHLAAHLGNYYVVKELLK 312
P+ QG P LA GN + + L++
Sbjct: 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 212 ETPLYLAAERGYKDVMEDILS--TCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDR 269
E+PL LAA+ + +L CE G MG TALH AA + L+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYD-NLEAAMVLMEAAP 61
Query: 270 EIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAA-------YK 320
E++ T +G LH+A N +V+ LL A +SA Y+
Sbjct: 62 ELVF--------EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113
Query: 321 PDN---EGKIPLHLAAGKGRAYTMQELI 345
P N G+ PL AA G ++ LI
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLI 141
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVME 228
+TALH A YNQ D +K+L K L NEAGET L +A ++ +K+ E
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARKKHHKECEE 257
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 16/56 (28%)
Query: 126 AKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTAL 181
A G T LH AA + D +K+L+ R ++GT NEA +TAL
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLK----------------GRALVGTVNEAGETAL 244
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G PLHLAA + +V+ LLK AD++A D G+ PL
Sbjct: 30 VRILM--ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI---DAIGETPL 84
Query: 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFL 378
HL A G ++ L++ + D G F + +G+ E L
Sbjct: 85 HLVAMYGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY 187
G+ LL AAR G D V++L+A N E+ V T LH A
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADV---NAEDKVGL-------------TPLHLAAMN 57
Query: 188 NQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247
+ +++V++L K +++ + GETPL+L A G+ +++E +L G+TA
Sbjct: 58 DHLEIVEVLLKNGADVNA-IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 248 L 248
Sbjct: 117 F 117
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLI 148
+A GET LH+ A +GH +IV+VL+
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLL 100
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 293 LPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSC 352
L +H A G +KE L+ + KPD G PL A+ G T++ L+
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 353 ELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIK 410
L +R + A+ G V LLE +N +++G TPLL +AV G+ +K
Sbjct: 64 ILAKERE-SALSLASTGGYTDIVGLLLERDV---DINIYDWNGGTPLL-YAVRGNHVK 116
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 34/181 (18%)
Query: 52 LHQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVR 111
+HQ+ E L H+ N KP+ + + S F + + VR
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET------------VR 53
Query: 112 VILEMC--PILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLM 169
+LE P +L K E+ L +A+ G+ DIV +L+ + + G
Sbjct: 54 FLLEWGADPHILAKER---ESALSLASTGGYTDIVGLLLERDVDINIYDWNGG------- 103
Query: 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMED 229
T L AVR N V V+ L +L+ +A+ +G TP+ LA GY+ V +
Sbjct: 104 ---------TPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQV 153
Query: 230 I 230
I
Sbjct: 154 I 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 293 LPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSC 352
L +H A G +KE L+ + KPD G PL A+ G T++ L+
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 353 ELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIK 410
L +R + A+ G V LLE +N +++G TPLL +AV G+ +K
Sbjct: 64 ILAKERE-SALSLASTGGYTDIVGLLLERDV---DINIYDWNGGTPLL-YAVHGNHVK 116
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 34/181 (18%)
Query: 52 LHQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVR 111
+HQ+ E L H+ N KP+ + + S F + + VR
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET------------VR 53
Query: 112 VILEMC--PILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLM 169
+LE P +L K E+ L +A+ G+ DIV +L+ + + G
Sbjct: 54 FLLEWGADPHILAKER---ESALSLASTGGYTDIVGLLLERDVDINIYDWNGG------- 103
Query: 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMED 229
T L AV N V V+ L +L+ +A+ +G TP+ LA GY+ V +
Sbjct: 104 ---------TPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQV 153
Query: 230 I 230
I
Sbjct: 154 I 154
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 15/157 (9%)
Query: 180 ALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVD 239
++H+ ++D +K ++ NL +E G TPL A+ G + + +L P
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 240 HGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA 299
+AL A+ YT +I+ +LL + D G PL A
Sbjct: 65 LAKERESALSLASTGGYT------------DIVGLLLE--RDVDINIYDWNGGTPLLYAV 110
Query: 300 HLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKG 336
H GN+ E L A + + G P+ LA G
Sbjct: 111 H-GNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 174 NEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILST 233
N D L EA + V+ VK L D TPL+ AA V+E +L
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 234 CESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293
G LH A +Y ++ E+ ++L++ G D +
Sbjct: 65 GADVHAKDKGGLVPLHNAC-------SYGHY-----EVAELLVK--HGAVVNVADLWKFT 110
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR 346
PLH AA G Y + K LL+ K + +G PL L K +Q+L+R
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLV--KDGDTDIQDLLR 160
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 298 AAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
AA G+ VK+L + PLH AAG R ++ L++ + D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDK 73
Query: 358 RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHP 416
G H A G E L+++ ++ N+ + + TPL E A G + I +
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQH 130
Query: 417 KVDRLAFNHQNNSAEDIIR 435
D N N+ D+++
Sbjct: 131 GADPTKKNRDGNTPLDLVK 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 174 NEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILST 233
N D L EA + V+ VK L D TPL+ AA V+E +L
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 234 CESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293
G LH A +Y ++ E+ ++L++ G D +
Sbjct: 69 GADVHAKDKGGLVPLHNAC-------SYGHY-----EVAELLVK--HGAVVNVADLWKFT 114
Query: 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR 346
PLH AA G Y + K LL+ K + +G PL L K +Q+L+R
Sbjct: 115 PLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLV--KDGDTDIQDLLR 164
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 298 AAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD 357
AA G+ VK+L + PLH AAG R ++ L++ + D
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDK 77
Query: 358 RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHP 416
G H A G E L+++ ++ N+ + + TPL E A G + I +
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQH 134
Query: 417 KVDRLAFNHQNNSAEDIIR 435
D N N+ D+++
Sbjct: 135 GADPTKKNRDGNTPLDLVK 153
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 278 SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGK--IPLHLAAGK 335
+ G+ ++ D+Q L AA G+ VK+L + + D EG+ PLH AAG
Sbjct: 1 GAMGSGNSEADRQ----LLEAAKAGDVETVKKLCT--VQSVNCRDIEGRQSTPLHFAAGY 54
Query: 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDG 395
R ++ L++ + D G H A G E L+++ ++ N+ + +
Sbjct: 55 NRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-- 111
Query: 396 NTPLLEHAVSGSF-IKSFVCHPKVDRLAFNHQNNSAEDIIR 435
TPL E A G + I + D N N+ D+++
Sbjct: 112 -TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES 236
+ T LH A YN+V VV+ L + ++ + ++ G PL+ A G+ +V E +
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELL------ 96
Query: 237 PVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLH 296
V HG + ++ A ++T + + EI K+LL+ G TK ++ G PL
Sbjct: 97 -VKHGAV----VNVADLWKFT-PLHEAAAKGKYEICKLLLQ--HGADPTKKNRDGNTPLD 148
Query: 297 L 297
L
Sbjct: 149 L 149
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 60/176 (34%), Gaps = 49/176 (27%)
Query: 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMED 229
+G+ N D L EA + V+ VK L D TPL+ AA GY V
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRV--- 57
Query: 230 ILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQ 289
+ EY LQ G D+
Sbjct: 58 ----------------------SVVEYLLQ--------------------HGADVHAKDK 75
Query: 290 QGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELI 345
G +PLH A G +Y V ELL + D PLH AA KG+ Y + +L+
Sbjct: 76 GGLVPLHNACSYG-HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK-YEICKLL 129
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 270 EIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPL 329
+ +KVL+ G PD G LP+HLA G+ VV L A S ++ D G PL
Sbjct: 88 DTLKVLVE--HGADVNVPDGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPL 143
Query: 330 HLAAGKG 336
LA +G
Sbjct: 144 ELALQRG 150
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+ G + +H AAR G D +KVL+ + N +G A +H A
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLV---EHGADVNVPDGTGA-------------LPIHLA 114
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
V+ VV L E DA G TPL LA +RG +D++ DIL
Sbjct: 115 VQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV-DIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 270 EIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPL 329
+ +KVL+ G PD G LP+HLA G+ VV L A S ++ D G PL
Sbjct: 82 DTLKVLVE--HGADVNVPDGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPL 137
Query: 330 HLAAGKG 336
LA +G
Sbjct: 138 ELALQRG 144
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184
+ G + +H AAR G D +KVL+ + N +G A +H A
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLV---EHGADVNVPDGTGA-------------LPIHLA 108
Query: 185 VRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDIL 231
V+ VV L E DA G TPL LA +RG +D++ DIL
Sbjct: 109 VQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV-DIL 152
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDAN------------EAGETPLYLAAERGYKDV 226
+ALH A+ + VK+L + ++ A GE PL LAA DV
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 227 MEDILSTCESPVD---HGPMGRTALHA-AAFREYTLQTYYYFFRKDREIIKVLLRSSKGT 282
+ +L P +G T LHA + + + ++++ R
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 224
Query: 283 QTTK-PDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKP 321
Q + + QG PL LAA G + + +L+ + S Y+P
Sbjct: 225 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGPYQP 264
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G+ PLHLAA G+ +V+ LLK AD++A D GK
Sbjct: 18 VRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ---DKFGKTAF 72
Query: 330 HLAAGKG 336
++ G
Sbjct: 73 DISIDNG 79
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++ G TPL+LAA G+ +++E +L
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 241 GPMGRTAL 248
G+TA
Sbjct: 65 DKFGKTAF 72
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Query: 125 NAK---GETLLHIAARHGHYDIVKVLI 148
NAK G T LH+AAR GH +IV+VL+
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|3LJ5|A Chain A, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|B Chain B, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|C Chain C, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|D Chain D, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|E Chain E, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|F Chain F, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|G Chain G, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|H Chain H, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|I Chain I, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|J Chain J, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|K Chain K, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|L Chain L, Full Length Bacteriophage P22 Portal Protein
Length = 725
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 86 WRMISTFKKQSSSDDREVIRGENF----VRVILEMCPILLLKANAKGETLLHIAARHGHY 141
WR+++ ++ QS + + +VIR E VI + L+ K++A+ T++H +++G
Sbjct: 126 WRLVTDYEDQSPTSNNQVIRREPIHSACSHVIWDSNSKLMDKSDARHCTVIHSMSQNGWE 185
Query: 142 DIVKVLIAECKK-PHQNNPEEGV 163
D + + P NP + V
Sbjct: 186 DFAEKYDLDADDIPSFQNPNDWV 208
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++ G TPL+LAA G+ +V++ +L
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 241 GPMGRTAL 248
G+TA
Sbjct: 87 DKFGKTAF 94
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G PLHLAA G+ VVK LL+ AD+ A D GK
Sbjct: 40 VRILM--ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ---DKFGKTAF 94
Query: 330 HLAAGKG 336
++ G
Sbjct: 95 DISIDNG 101
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLI 148
+ G T LH+AAR+GH ++VK+L+
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 214 PLYL---AAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDRE 270
PL L AA G +V++ + P G TALH A +
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA------------ICGANYS 68
Query: 271 IIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK 312
I+ L+ + G PD GW PLH AA + + L++
Sbjct: 69 IVDFLI--TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ 108
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 285 TKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAA 333
++P+++G LH A NY +V L+ A + PD+ G PLH AA
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAA 95
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 94/232 (40%), Gaps = 37/232 (15%)
Query: 123 KANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALH 182
+A+ G+T LHIA G+ V L+ Q E L N + T LH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRE--------LDIYNNLRQTPLH 51
Query: 183 EAVRYNQVDVVKMLTKEDPN-LSYDANEAGETPLYLAAERGYKDVMEDIL-STCESPVDH 240
AV VV++L + ++ D + G+T +LA E + +L S +D
Sbjct: 52 LAVITTLPSVVRLLVTAGASPMALDRH--GQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Query: 241 GPM---GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHL 297
G TALH A E +T + +I V ++S G PL
Sbjct: 110 EARNYDGLTALHVAVNTECQ-ETVQLLLERGADIDAVDIKS------------GRSPLIH 156
Query: 298 AAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRS 347
A + +V+ LL+ A+++A G LH A+G+G ++ L+RS
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMY---SGSSALHSASGRGLLPLVRTLVRS 205
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 118/320 (36%), Gaps = 84/320 (26%)
Query: 122 LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTAL 181
+K++ + +H+AAR G D V+ LI E GV+ N TAL
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLI-----------ETGVSPT-----IQNRFGCTAL 57
Query: 182 HEAVRYNQVDVVKMLTK--EDPNLSYDANEAGETPLYLAAERGYKDVM------------ 227
H A ++ VD K L E +L + G+ P++LA D++
Sbjct: 58 HLACKFGCVDTAKYLASVGEVHSLWH-----GQKPIHLAVXANKTDLVVALVEGAKERGQ 112
Query: 228 --EDILSTCE--------SPVDHGPMGRTALH-AAAFREYTLQTYYYFFR---------- 266
E +L+ C+ S V H G+TALH L+ +
Sbjct: 113 XPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDK 171
Query: 267 ------------KDREIIKVLLRSSKGTQTTKPD---QQGWLPLHLAAHLGNYYVVKELL 311
++RE + + + + + D +QG LH A + V +
Sbjct: 172 ADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFV 231
Query: 312 KADISAAYKPDNEGKIPLHLAAGKGRAYTMQE--------LIRSCP---SSCELVDDRGW 360
+ I + DNE +PL+L+ +E LI++CP + L D W
Sbjct: 232 EXGIDVNXE-DNEHTVPLYLSVRAAXVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290
Query: 361 NVFHFAAHSGSRRTVEFLLE 380
F AA S++ V LL+
Sbjct: 291 LDFVPAAADPSKQEVLQLLQ 310
>pdb|3LJ4|A Chain A, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|B Chain B, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|C Chain C, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|D Chain D, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|E Chain E, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|F Chain F, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|G Chain G, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|H Chain H, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|I Chain I, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|J Chain J, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|K Chain K, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|3LJ4|L Chain L, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The First Biological
Assembly
pdb|1VT0|M Chain M, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|N Chain N, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|O Chain O, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|P Chain P, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|Q Chain Q, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|R Chain R, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|S Chain S, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|T Chain T, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|U Chain U, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|V Chain V, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|W Chain W, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
pdb|1VT0|X Chain X, Bacteriophage P22 Portal Protein Bound To Middle Tail
Factor Gp4. This File Contain The Second Biological
Assembly
Length = 602
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 86 WRMISTFKKQSSSDDREVIRGENF----VRVILEMCPILLLKANAKGETLLHIAARHGHY 141
WR+++ ++ QS + + +VIR E VI + L K++A+ T++H +++G
Sbjct: 126 WRLVTDYEDQSPTSNNQVIRREPIHSACSHVIWDSNSKLXDKSDARHCTVIHSXSQNGWE 185
Query: 142 DIVKVLIAECKK-PHQNNPEEGV 163
D + + P NP + V
Sbjct: 186 DFAEKYDLDADDIPSFQNPNDWV 208
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 266 RKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDN 323
++D + +K +L+ + Q + D +G PL++A H + + K L+ ADI+ +
Sbjct: 15 QRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD 73
Query: 324 EGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381
P A +GR + +++ + G N AA G V+ LLE+
Sbjct: 74 S---PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 272 IKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPL 329
+++L+ + G D+ G PLHLAA G+ VVK LL+ AD++A D GK
Sbjct: 22 VRILM--ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ---DKFGKTAF 76
Query: 330 HLAAGKG 336
++ G
Sbjct: 77 DISIDNG 83
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 181 LHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDH 240
L EA R Q D V++L +++ ++ G TPL+LAA G+ +V++ +L
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 241 GPMGRTAL 248
G+TA
Sbjct: 69 DKFGKTAF 76
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 125 NAKGETLLHIAARHGHYDIVKVLI 148
+ G T LH+AAR+GH ++VK+L+
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLL 59
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 283 QTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQ 342
T K D G + A N +V LL A A K E + PLH AA ++
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNA---GALKNLLENEFPLHQAATLEDTKIVK 79
Query: 343 ELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380
L+ S + DD+G ++A SG+ +TV+ ++
Sbjct: 80 ILLFSGLDDSQF-DDKGNTALYYAVDSGNXQTVKLFVK 116
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 324 EGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPS 383
+G PL LAA +++LI S + VDD G + H+AA + LL+N +
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 384 LGNLMNEKNYDGNTPLLEHAVSGSF 408
++ N K TPL A GS+
Sbjct: 73 NKDMQNNKE---ETPLFLAAREGSY 94
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 211 GETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDRE 270
G TPL LAA + ++ED++++ +G++ALH + + +
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH------------WAAAVNNVD 62
Query: 271 IIKVLLR--SSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELL 311
VLL+ ++K Q K + PL LAA G+Y K LL
Sbjct: 63 AAVVLLKNGANKDMQNNKEET----PLFLAAREGSYETAKVLL 101
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARL--MLGTTNEAKDTALHEAV 185
GE L +AA IVK L+ +P + + V L ++ + D
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 186 RYNQVDVVKMLTKEDPNLSYD--ANEAGETPLYLAAERGYKDVMEDIL 231
YN++ ++ K P L + N G TPL LAA G V+ IL
Sbjct: 208 XYNEILILG--AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
>pdb|2NRK|A Chain A, Crystal Structure Of Conserved Protein Grpb From
Enterococcus Faecalis
Length = 173
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 42 VGKFEEHKAVLHQILTPNENTILHIHITALPNKTMKP 78
V +FEE L QIL N + HI T++PN KP
Sbjct: 16 VEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKP 52
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 288 DQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRS 347
D+ G L A LG+ V+ L +A ++ G LH+AAG R ++ L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-E 131
Query: 348 CPSSCELVDDRGWNVFHFA 366
+ E+ D+RG A
Sbjct: 132 LGADIEVEDERGLTALELA 150
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLA 218
TALH + + +K+L + ++ ANE+GETPL +A
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIA 245
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 288 DQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRS 347
D+ G L A LG+ V+ L +A ++ G LH+AAG R ++ L+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-E 132
Query: 348 CPSSCELVDDRGWNVFHFA 366
+ E+ D+RG A
Sbjct: 133 LGADIEVEDERGLTALELA 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,852,803
Number of Sequences: 62578
Number of extensions: 706514
Number of successful extensions: 2457
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 410
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)