Query 039863
Match_columns 563
No_of_seqs 415 out of 3986
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:45:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-54 3.6E-59 447.3 36.5 363 22-439 7-389 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-54 4.5E-59 446.6 33.9 332 53-439 7-356 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.7E-43 9.1E-48 349.2 28.3 291 59-423 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 6E-42 2E-46 339.5 31.4 296 25-391 21-330 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 2.4E-42 8.3E-47 344.3 24.1 299 56-436 20-322 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 2.1E-41 7.3E-46 327.1 29.0 264 127-425 4-284 (285)
7 1wdy_A 2-5A-dependent ribonucl 100.0 2E-41 6.8E-46 327.3 28.7 267 59-393 4-284 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 5.7E-41 1.9E-45 334.4 31.0 327 22-437 17-349 (351)
9 2fo1_E LIN-12 protein; beta-ba 100.0 9.2E-42 3.1E-46 342.4 17.3 312 32-420 40-372 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-39 4.2E-44 314.4 23.9 270 124-421 11-281 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 8.3E-39 2.8E-43 308.6 24.0 255 56-381 11-275 (285)
12 2fo1_E LIN-12 protein; beta-ba 100.0 2.3E-39 7.8E-44 324.9 19.7 259 24-349 89-370 (373)
13 2xai_A ASB-9, ankyrin repeat a 100.0 3E-38 1E-42 300.8 22.3 240 176-438 2-249 (261)
14 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-38 4.2E-43 303.5 19.2 243 127-406 2-249 (261)
15 1oy3_D Transcription factor in 100.0 2.7E-38 9.1E-43 305.0 21.7 265 121-438 2-269 (282)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 7.7E-38 2.6E-42 296.6 23.1 247 52-350 2-248 (253)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-37 4.1E-42 295.3 21.4 228 170-415 3-244 (253)
18 3ljn_A Hypothetical protein; a 100.0 3.2E-38 1.1E-42 316.2 17.3 275 22-348 13-312 (364)
19 3ljn_A Hypothetical protein; a 100.0 2.3E-38 7.9E-43 317.2 16.2 209 106-348 32-267 (364)
20 1oy3_D Transcription factor in 100.0 2.4E-37 8.3E-42 298.3 18.9 232 170-439 2-237 (282)
21 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-36 3.9E-41 286.4 22.8 232 170-418 2-240 (241)
22 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-36 4.9E-41 285.7 21.9 228 121-381 2-238 (241)
23 3aji_A 26S proteasome non-ATPa 100.0 1.7E-36 5.7E-41 283.4 21.8 228 174-420 3-231 (231)
24 3b7b_A Euchromatic histone-lys 100.0 7.7E-36 2.6E-40 280.0 26.3 215 173-406 7-221 (237)
25 3b7b_A Euchromatic histone-lys 100.0 4.3E-36 1.5E-40 281.8 23.8 226 122-380 5-231 (237)
26 3aji_A 26S proteasome non-ATPa 100.0 3.3E-36 1.1E-40 281.3 22.4 222 128-381 6-227 (231)
27 2dzn_A Probable 26S proteasome 100.0 1.1E-35 3.6E-40 277.3 23.4 213 177-405 2-218 (228)
28 4b93_B Ankyrin repeat domain-c 100.0 1.8E-36 6.3E-41 288.7 16.2 216 173-407 7-230 (269)
29 1s70_B 130 kDa myosin-binding 100.0 1.5E-36 5.1E-41 295.5 15.1 259 106-406 10-276 (299)
30 4b93_B Ankyrin repeat domain-c 100.0 1.3E-36 4.6E-41 289.6 14.4 230 123-379 6-236 (269)
31 2dzn_A Probable 26S proteasome 100.0 4.9E-35 1.7E-39 272.8 24.1 221 128-381 2-227 (228)
32 3eu9_A Huntingtin-interacting 100.0 9.1E-35 3.1E-39 273.1 25.6 230 122-382 3-233 (240)
33 1s70_B 130 kDa myosin-binding 100.0 1.2E-35 4.1E-40 289.1 14.8 270 134-437 4-275 (299)
34 2f8y_A Notch homolog 1, transl 100.0 2.7E-34 9.3E-39 266.8 21.8 215 106-351 3-217 (223)
35 3eu9_A Huntingtin-interacting 100.0 5.6E-34 1.9E-38 267.7 23.8 233 54-351 3-236 (240)
36 1sw6_A Regulatory protein SWI6 100.0 7.4E-36 2.5E-40 293.6 8.8 267 106-406 31-327 (327)
37 3kea_A K1L; tropism, ANK repea 100.0 1.3E-34 4.6E-39 279.0 17.2 225 172-426 26-253 (285)
38 2f8y_A Notch homolog 1, transl 100.0 3.4E-34 1.2E-38 266.1 19.3 217 187-421 1-218 (223)
39 3kea_A K1L; tropism, ANK repea 100.0 1.9E-34 6.4E-39 278.0 17.4 241 106-395 12-254 (285)
40 1sw6_A Regulatory protein SWI6 100.0 2.9E-35 9.8E-40 289.4 0.8 262 126-437 21-326 (327)
41 2rfa_A Transient receptor pote 100.0 8.1E-32 2.8E-36 251.7 22.1 204 127-381 2-219 (232)
42 1ikn_D Protein (I-kappa-B-alph 100.0 3.1E-33 1.1E-37 262.0 8.9 211 172-433 3-225 (236)
43 2rfa_A Transient receptor pote 100.0 3.3E-31 1.1E-35 247.5 22.2 210 176-425 2-228 (232)
44 1ikn_D Protein (I-kappa-B-alph 100.0 1.4E-32 4.8E-37 257.5 11.8 182 169-366 37-226 (236)
45 3hra_A Ankyrin repeat family p 100.0 8E-31 2.7E-35 239.1 20.5 193 126-348 3-201 (201)
46 3hra_A Ankyrin repeat family p 100.0 3.5E-30 1.2E-34 234.8 23.9 192 175-381 3-200 (201)
47 2pnn_A Transient receptor pote 100.0 1.1E-31 3.9E-36 257.3 13.0 208 122-349 7-257 (273)
48 2etb_A Transient receptor pote 100.0 7.7E-31 2.7E-35 248.9 15.5 197 128-348 2-244 (256)
49 2pnn_A Transient receptor pote 100.0 8.8E-31 3E-35 251.0 13.4 227 53-328 6-270 (273)
50 4gpm_A Engineered protein OR26 100.0 4.6E-29 1.6E-33 219.3 20.8 157 130-317 6-162 (169)
51 2etb_A Transient receptor pote 100.0 5.6E-30 1.9E-34 243.0 15.2 191 176-381 1-243 (256)
52 4gpm_A Engineered protein OR26 100.0 4.7E-29 1.6E-33 219.2 19.9 152 214-381 7-158 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 1.5E-29 5.3E-34 240.5 14.5 202 125-350 2-250 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 4.2E-29 1.4E-33 237.6 13.3 203 27-278 3-247 (260)
55 2aja_A Ankyrin repeat family p 100.0 3.1E-31 1.1E-35 262.9 -6.1 265 106-440 78-362 (376)
56 2rfm_A Putative ankyrin repeat 100.0 1.6E-27 5.3E-32 215.6 18.5 165 119-314 26-190 (192)
57 4hbd_A KN motif and ankyrin re 100.0 1.5E-27 5.2E-32 228.4 19.0 178 106-313 88-272 (276)
58 4hbd_A KN motif and ankyrin re 100.0 9.4E-28 3.2E-32 229.8 16.6 187 179-381 78-272 (276)
59 3v30_A DNA-binding protein rfx 99.9 2.2E-27 7.5E-32 210.5 15.7 170 60-294 2-171 (172)
60 2aja_A Ankyrin repeat family p 99.9 6.4E-31 2.2E-35 260.6 -8.3 276 28-406 64-360 (376)
61 2rfm_A Putative ankyrin repeat 99.9 9.2E-27 3.1E-31 210.5 18.9 163 169-347 27-189 (192)
62 3v31_A Ankyrin repeat family A 99.9 1.8E-26 6.2E-31 203.5 18.4 158 127-315 2-159 (167)
63 3v30_A DNA-binding protein rfx 99.9 1.1E-26 3.8E-31 206.0 16.9 157 178-349 3-159 (172)
64 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.2E-26 4.1E-31 203.5 17.0 155 211-381 5-159 (162)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.8E-26 1.3E-30 201.8 19.7 160 124-314 10-169 (169)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.9E-26 6.5E-31 202.2 17.2 159 176-350 4-162 (162)
67 3v31_A Ankyrin repeat family A 99.9 3.5E-26 1.2E-30 201.7 17.9 157 177-349 3-159 (167)
68 2y1l_E Darpin-8.4; hydrolase-i 99.9 1E-25 3.5E-30 199.0 19.0 156 175-346 12-167 (169)
69 2vge_A RELA-associated inhibit 99.9 1.9E-28 6.6E-33 227.4 1.2 164 268-439 33-200 (229)
70 2vge_A RELA-associated inhibit 99.9 3.6E-28 1.2E-32 225.6 2.3 188 194-406 2-199 (229)
71 1awc_B Protein (GA binding pro 99.9 1.5E-25 5.2E-30 194.4 18.7 150 129-310 3-152 (153)
72 3f6q_A Integrin-linked protein 99.9 4.6E-26 1.6E-30 203.3 15.3 169 57-290 2-170 (179)
73 3f6q_A Integrin-linked protein 99.9 4.7E-26 1.6E-30 203.3 14.5 168 242-427 3-171 (179)
74 1awc_B Protein (GA binding pro 99.9 2.2E-25 7.4E-30 193.4 18.2 150 178-344 3-152 (153)
75 3twr_A Tankyrase-2; ankyrin re 99.9 1E-25 3.6E-30 198.2 14.8 161 173-349 4-164 (165)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.2E-27 1.1E-31 221.3 5.3 177 211-407 5-193 (239)
77 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-25 4.4E-30 197.6 14.3 161 124-315 4-164 (165)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.5E-25 2.2E-29 191.1 17.0 150 213-380 4-154 (156)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 9.7E-25 3.3E-29 190.0 17.5 154 177-347 2-155 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.9E-27 3.4E-31 217.9 2.6 188 175-381 3-201 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 6.1E-24 2.1E-28 184.9 9.3 144 285-434 6-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 1.9E-23 6.5E-28 177.1 10.7 133 281-419 2-136 (136)
83 3t8k_A Uncharacterized protein 99.9 3E-24 1E-28 191.9 5.3 158 31-236 8-179 (186)
84 3t8k_A Uncharacterized protein 99.9 5.6E-23 1.9E-27 183.6 11.9 159 128-313 6-176 (186)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 7.3E-23 2.5E-27 178.0 11.4 144 239-402 7-151 (156)
86 1d9s_A Cyclin-dependent kinase 99.9 1.8E-22 6.2E-27 171.0 12.3 128 172-315 7-135 (136)
87 3ui2_A Signal recognition part 99.9 6.8E-23 2.3E-27 192.2 9.1 156 106-313 27-182 (244)
88 3deo_A Signal recognition part 99.9 1.1E-22 3.8E-27 182.0 6.5 142 124-313 40-181 (183)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.1E-21 2.1E-25 159.2 16.2 124 177-315 2-125 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 4.1E-21 1.4E-25 162.6 14.6 126 174-314 11-136 (136)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1E-20 3.5E-25 157.8 16.6 125 210-349 1-125 (126)
92 2jab_A H10-2-G3; HER2, darpin, 99.9 4.5E-21 1.5E-25 162.4 13.8 125 208-347 11-135 (136)
93 3c5r_A BARD-1, BRCA1-associate 99.9 1E-21 3.6E-26 166.6 9.7 128 283-416 3-131 (137)
94 3c5r_A BARD-1, BRCA1-associate 99.8 4.1E-21 1.4E-25 163.0 11.0 127 123-278 5-131 (137)
95 3deo_A Signal recognition part 99.8 8.8E-21 3E-25 169.5 10.8 110 175-300 42-152 (183)
96 2b0o_E UPLC1; arfgap, structur 99.8 3.7E-20 1.2E-24 178.7 15.7 137 213-371 153-298 (301)
97 3aaa_C Myotrophin, protein V-1 99.8 2.1E-20 7.2E-25 155.3 12.0 114 125-255 4-117 (123)
98 3ui2_A Signal recognition part 99.8 2.6E-20 8.9E-25 174.5 13.2 108 176-299 44-152 (244)
99 3ehr_A Osteoclast-stimulating 99.8 4.6E-21 1.6E-25 177.2 7.4 137 288-428 70-207 (222)
100 3ehr_A Osteoclast-stimulating 99.8 2.1E-20 7.3E-25 172.7 10.8 136 122-288 67-203 (222)
101 2b0o_E UPLC1; arfgap, structur 99.8 5.3E-20 1.8E-24 177.6 11.6 148 241-407 148-298 (301)
102 3aaa_C Myotrophin, protein V-1 99.8 1.4E-19 4.8E-24 150.2 10.7 109 175-298 5-113 (123)
103 1dcq_A PYK2-associated protein 99.8 2.9E-19 9.8E-24 170.5 13.1 125 292-420 131-264 (278)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-18 6.2E-23 135.6 12.5 93 127-236 1-93 (93)
105 1dcq_A PYK2-associated protein 99.8 1.8E-18 6.3E-23 164.9 15.0 193 124-350 62-263 (278)
106 3jue_A Arfgap with coiled-coil 99.8 7.8E-19 2.7E-23 173.2 12.6 150 241-406 196-348 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 2.8E-18 9.6E-23 178.0 12.6 139 291-433 132-279 (497)
108 2l6b_A NR1C; ankyrin, consensu 99.7 1.1E-18 3.9E-23 142.8 7.1 107 321-431 5-112 (115)
109 3lvq_E ARF-GAP with SH3 domain 99.7 1.5E-17 5.2E-22 172.5 15.4 136 178-334 133-276 (497)
110 3jue_A Arfgap with coiled-coil 99.7 1.7E-17 5.9E-22 163.6 14.4 145 210-369 198-347 (368)
111 2l6b_A NR1C; ankyrin, consensu 99.7 4.3E-18 1.5E-22 139.3 8.3 109 286-399 4-112 (115)
112 1n0q_A 3ANK, 3 ankyrin repeats 99.7 3.1E-17 1E-21 128.5 12.2 78 177-255 2-79 (93)
113 2zgd_A 3 repeat synthetic anky 99.6 8.6E-16 3E-20 124.3 10.4 94 120-230 16-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 7.9E-15 2.7E-19 118.6 10.4 93 170-275 17-109 (110)
115 1gp8_A Protein (scaffolding pr 48.3 8.9 0.0003 22.6 1.6 19 32-50 16-34 (40)
116 3gvo_A Pumilio 2, pumilio homo 20.9 55 0.0019 31.1 3.0 265 25-380 33-317 (351)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-54 Score=447.26 Aligned_cols=363 Identities=25% Similarity=0.306 Sum_probs=292.4
Q ss_pred hhhhchhhHHHHHHHHHcCChhhhhhhhhccc--cccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCc
Q 039863 22 VREKNIQLMDNLYEAAVEGHVGKFEEHKAVLH--QILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSD 99 (563)
Q Consensus 22 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~--~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 99 (563)
++..+..|.||||.||..|++++|++|++.|+ +..+..|.||||+|+. .|
T Consensus 7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~--------------------------~g-- 58 (437)
T 1n11_A 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR--------------------------AG-- 58 (437)
T ss_dssp --------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHH--------------------------HT--
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--------------------------cC--
Confidence 45566677778888888888888888888744 4467778888888888 66
Q ss_pred hhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchh-----------HHHHHH
Q 039863 100 DREVIRGENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEG-----------VAAARL 168 (563)
Q Consensus 100 ~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-----------~~~~~~ 168 (563)
+.+++++|++.+.+ ++.++..|.||||+|+..|+.++|++|++.|+++...+.... .+..+.
T Consensus 59 ------~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~ 131 (437)
T 1n11_A 59 ------HTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131 (437)
T ss_dssp ------CHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred ------CHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Confidence 66666666666655 455566666666666666666666666666665543322111 111111
Q ss_pred Hh------ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 039863 169 ML------GTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGP 242 (563)
Q Consensus 169 ~l------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 242 (563)
++ ...+..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+++++..+.
T Consensus 132 Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 210 (437)
T 1n11_A 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210 (437)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCT
T ss_pred HHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence 21 2356778899999999999999999999888776 4677888999999999999999999999888888888
Q ss_pred CCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCC
Q 039863 243 MGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPD 322 (563)
Q Consensus 243 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 322 (563)
.|.||||.|+..+ +.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+++. ...+
T Consensus 211 ~g~t~L~~A~~~~------------~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~ 275 (437)
T 1n11_A 211 NGYTPLHIAAKQN------------QVEVARSLLQY--GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGN 275 (437)
T ss_dssp TCCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCC
T ss_pred CCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCC
Confidence 8999999999888 99999999997 8888999999999999999999999999999998887 5568
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHH
Q 039863 323 NEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEH 402 (563)
Q Consensus 323 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A 402 (563)
..|.||||+|+..|+.+++++|++++.+. +..|..|+||||+|+.+++.+++++|++. |+++|.+|..|+||||+|
T Consensus 276 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L~~A 351 (437)
T 1n11_A 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQA 351 (437)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHHHHH
Confidence 89999999999999999999999998765 67899999999999999999999999999 889999999999999999
Q ss_pred HHcCC-chhhhccCcccCccccccCCCCHHHHHHhccc
Q 039863 403 AVSGS-FIKSFVCHPKVDRLAFNHQNNSAEDIIRSKKV 439 (563)
Q Consensus 403 ~~~~~-~~~~~l~~~g~d~~~~n~~g~t~l~~a~~~~~ 439 (563)
+..++ .++++|+++|+|++.+|..|.||+++|...+.
T Consensus 352 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred HHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence 99995 46699999999999999999999999987764
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-54 Score=446.55 Aligned_cols=332 Identities=27% Similarity=0.329 Sum_probs=257.9
Q ss_pred ccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcHH
Q 039863 53 HQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETLL 132 (563)
Q Consensus 53 ~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~L 132 (563)
++..+..|.||||+||. .| +.++|++|++++.+ ++..+..|.|||
T Consensus 7 ~~~~~~~g~t~L~~Aa~--------------------------~g--------~~~~v~~Ll~~g~~-~~~~~~~~~t~L 51 (437)
T 1n11_A 7 GGGGGESGLTPLHVASF--------------------------MG--------HLPIVKNLLQRGAS-PNVSNVKVETPL 51 (437)
T ss_dssp --------CCHHHHHHH--------------------------HT--------CHHHHHHHHHTTCC-SCCSSSCCCCHH
T ss_pred ccccCCCCCCHHHHHHH--------------------------CC--------CHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 45578899999999999 99 99999999999876 577888999999
Q ss_pred HHHHHcCcHHHHHHHHHhcCCCCCCCCchh-----------HHHHHHHh------ccCCCCCCcHHHHHHHcCCHHHHHH
Q 039863 133 HIAARHGHYDIVKVLIAECKKPHQNNPEEG-----------VAAARLML------GTTNEAKDTALHEAVRYNQVDVVKM 195 (563)
Q Consensus 133 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-----------~~~~~~~l------~~~~~~g~t~L~~A~~~g~~~iv~~ 195 (563)
|+||..|+.++|++|++.|++.+..+.... .+..+.++ +..+..|.||||+|+..|+.+++++
T Consensus 52 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~ 131 (437)
T 1n11_A 52 HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999999998655332211 11122222 2345566666666666666666666
Q ss_pred HHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHH
Q 039863 196 LTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVL 275 (563)
Q Consensus 196 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~L 275 (563)
|++.+.+.. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|
T Consensus 132 Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~L 198 (437)
T 1n11_A 132 LLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN------------NLDIVKLL 198 (437)
T ss_dssp HHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTT------------CHHHHHHH
T ss_pred HHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHH
Confidence 666666554 24556677777777777777777777777777777777777777777777 78888888
Q ss_pred HhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCcccc
Q 039863 276 LRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELV 355 (563)
Q Consensus 276 l~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 355 (563)
++. +.+++..+..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.+.+. +..
T Consensus 199 l~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~ 274 (437)
T 1n11_A 199 LPR--GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLG 274 (437)
T ss_dssp GGG--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCC
T ss_pred HhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCC
Confidence 876 6777777778888888888888888888888887776 455778889999999999999999998887765 667
Q ss_pred ccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC-CchhhhccCcccCccccccCCCCHHHHH
Q 039863 356 DDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG-SFIKSFVCHPKVDRLAFNHQNNSAEDII 434 (563)
Q Consensus 356 d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~-~~~~~~l~~~g~d~~~~n~~g~t~l~~a 434 (563)
+..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+..+ ..++++|+++|+|++.+|..|.||+++|
T Consensus 275 ~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A 351 (437)
T 1n11_A 275 NKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351 (437)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhC---CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 88899999999999999999999988 7899999999999999999988 4466999999999999999999999999
Q ss_pred Hhccc
Q 039863 435 RSKKV 439 (563)
Q Consensus 435 ~~~~~ 439 (563)
...+.
T Consensus 352 ~~~g~ 356 (437)
T 1n11_A 352 AQQGH 356 (437)
T ss_dssp HHTTC
T ss_pred HHCCh
Confidence 87654
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.7e-43 Score=349.24 Aligned_cols=291 Identities=19% Similarity=0.172 Sum_probs=259.5
Q ss_pred CCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhccc-CCCCcHHHHHHH
Q 039863 59 NENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKAN-AKGETLLHIAAR 137 (563)
Q Consensus 59 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~-~~g~t~Lh~A~~ 137 (563)
.|+|+||.|+. .| +.++|++||+++.+ ++.++ ..|.||||+||.
T Consensus 24 ~~~t~L~~Av~--------------------------~g--------~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~ 68 (337)
T 4g8k_A 24 EDNHLLIKAVQ--------------------------NE--------DVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQ 68 (337)
T ss_dssp HHHHHHHHHHH--------------------------TT--------CHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred CCChHHHHHHH--------------------------cC--------CHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHH
Confidence 46789999999 99 99999999999988 45454 469999999999
Q ss_pred cCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHH
Q 039863 138 HGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYL 217 (563)
Q Consensus 138 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 217 (563)
.|+.++|++|+++|+++. .++..+.++++.++..+...++..++..+.++. ..+..|.|||++
T Consensus 69 ~g~~~iv~~Ll~~ga~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~ 131 (337)
T 4g8k_A 69 MSREDIVELLLRHGADPV----------------LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFME 131 (337)
T ss_dssp TTCHHHHHHHHHTTCCTT----------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHH
T ss_pred cCCHHHHHHHHHcCCchh----------------hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHH
Confidence 999999999999999855 478889999999999999999999999999887 478999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCC----------CCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccC
Q 039863 218 AAERGYKDVMEDILSTCESPVD----------HGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKP 287 (563)
Q Consensus 218 A~~~g~~~~v~~Ll~~~~~~~~----------~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 287 (563)
|+..|+.+++++|++.|++++. .+..|.||||.|+..| +.+++++|++. .+.+++..
T Consensus 132 A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g------------~~~~v~~LL~~-~gad~n~~ 198 (337)
T 4g8k_A 132 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG------------HVEVLKILLDE-MGADVNAC 198 (337)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT------------CHHHHHHHHHH-SCCCTTCC
T ss_pred HHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC------------CHHHHHHHHhc-cCCCcCcc
Confidence 9999999999999999988754 3456899999999999 99999999976 68999999
Q ss_pred CCCCCCHHHHHHHcCC----hHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHH
Q 039863 288 DQQGWLPLHLAAHLGN----YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363 (563)
Q Consensus 288 d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 363 (563)
+..|.||+|.++..+. ..++++|++.|+++ +.++..|.||||+|+..|+.++++.|++..+..++.+|..|+|||
T Consensus 199 d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL 277 (337)
T 4g8k_A 199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277 (337)
T ss_dssp CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHH
T ss_pred CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHH
Confidence 9999999998886654 35889999999988 567899999999999999999999999987777789999999999
Q ss_pred HHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCC-chhhhccCcccCcccc
Q 039863 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGS-FIKSFVCHPKVDRLAF 423 (563)
Q Consensus 364 h~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~-~~~~~l~~~g~d~~~~ 423 (563)
|+|+++|+.+++++|+++ |+++|.+ ||||+|+..++ .++++|+++|||+|..
T Consensus 278 ~~A~~~g~~~iv~~Ll~~---GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 278 LLAVELKLKKIAELLCKR---GASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHHHTTCHHHHHHHHTT---SCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHHHHcCCHHHHHHHHHC---CCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 999999999999999999 8887654 59999999985 4679999999999863
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6e-42 Score=339.53 Aligned_cols=296 Identities=23% Similarity=0.232 Sum_probs=259.1
Q ss_pred hchhhHHHHHHHHHcCChhhhhhhhhccccc--cC-CCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchh
Q 039863 25 KNIQLMDNLYEAAVEGHVGKFEEHKAVLHQI--LT-PNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDR 101 (563)
Q Consensus 25 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~-~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 101 (563)
....+.|+|+.||+.|++++|++||+.|+++ .+ ..|+||||+|+. +|
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~--------------------------~g---- 70 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ--------------------------MS---- 70 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH--------------------------TT----
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHH--------------------------cC----
Confidence 3455678999999999999999999997665 44 459999999999 99
Q ss_pred hhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHH
Q 039863 102 EVIRGENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTAL 181 (563)
Q Consensus 102 ~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L 181 (563)
+.++|++|++++.+ ++.++..+.++++.++..++..++..++..+.+.+ ..+..|.|||
T Consensus 71 ----~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~d~~g~t~l 129 (337)
T 4g8k_A 71 ----REDIVELLLRHGAD-PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN----------------ECDFYGFTAF 129 (337)
T ss_dssp ----CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------------CBCTTCCBHH
T ss_pred ----CHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcccchhhHHhhhccchhh----------------hhccCCCCHH
Confidence 99999999999987 67789999999999999999999999999988744 4889999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCccc---------cCcCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHH
Q 039863 182 HEAVRYNQVDVVKMLTKEDPNLSYD---------ANEAGETPLYLAAERGYKDVMEDILS-TCESPVDHGPMGRTALHAA 251 (563)
Q Consensus 182 ~~A~~~g~~~iv~~Ll~~~~~~~~~---------~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~Lh~A 251 (563)
|+|+..|+.+++++|++.++++... .+..|.||||+|+..|+.+++++|++ .|++++..+..|.|++|.+
T Consensus 130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~ 209 (337)
T 4g8k_A 130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHH
Confidence 9999999999999999998876532 34568999999999999999999996 5899999999999999988
Q ss_pred HhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhc-CCCCCccCCCCCChHHH
Q 039863 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKA-DISAAYKPDNEGKIPLH 330 (563)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~ 330 (563)
+..+... ....++++|++. +.+++..+..|.||||+|+..|+.++++.|+.. +.++ +.+|..|+||||
T Consensus 210 ~~~~~~~--------~~~~i~~lLl~~--gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~ 278 (337)
T 4g8k_A 210 LLSSDDS--------DVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALL 278 (337)
T ss_dssp HHHSCTT--------THHHHHHHHHHT--TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHH
T ss_pred HHHcCcc--------cHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHH
Confidence 8665211 134688999986 899999999999999999999999999999986 5555 677999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCC
Q 039863 331 LAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEK 391 (563)
Q Consensus 331 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~ 391 (563)
+|+..|+.+++++|+++|.+. ++.+|||+|+.+++.++|++|+++ |+++|..
T Consensus 279 ~A~~~g~~~iv~~Ll~~GAd~------n~~~~L~~A~~~~~~~iv~~Ll~~---GA~~d~~ 330 (337)
T 4g8k_A 279 LAVELKLKKIAELLCKRGAST------DCGDLVMTARRNYDHSLVKVLLSH---GAKEDFH 330 (337)
T ss_dssp HHHHTTCHHHHHHHHTTSCSS------TTCCHHHHHHHTTCHHHHHHHHHT---TCCC---
T ss_pred HHHHcCCHHHHHHHHHCCCCC------CCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCC
Confidence 999999999999999998754 456799999999999999999999 8887753
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.4e-42 Score=344.34 Aligned_cols=299 Identities=22% Similarity=0.219 Sum_probs=268.6
Q ss_pred cCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHH
Q 039863 56 LTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETLLHIA 135 (563)
Q Consensus 56 ~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A 135 (563)
.+..+.|+||.|+. .| +.+.++.|+...+..++.++..|.||||+|
T Consensus 20 ~~~~~~~~L~~A~~--------------------------~g--------~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A 65 (351)
T 3utm_A 20 TGEYKKDELLEAAR--------------------------SG--------NEEKLMALLTPLNVNCHASDGRKSTPLHLA 65 (351)
T ss_dssp HHHHHHHHHHHHHH--------------------------HT--------CHHHHHHHCCTTTTTCCCSSTTCCCHHHHH
T ss_pred eccccchhHHHHHH--------------------------cC--------CHHHHHHHHHhcCCCcccCCCCCCCHHHHH
Confidence 56677899999999 99 999999999876666788999999999999
Q ss_pred HHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHH
Q 039863 136 ARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPL 215 (563)
Q Consensus 136 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 215 (563)
|..|+.++|++|++.|++++ .++..|.||||+|+..|+.+++++|++.+.++. ..+..|.|||
T Consensus 66 ~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L 128 (351)
T 3utm_A 66 AGYNRVRIVQLLLQHGADVH----------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPL 128 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT----------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHH
T ss_pred HHcCCHHHHHHHHHcCCCCC----------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHH
Confidence 99999999999999998854 478899999999999999999999999999887 4788899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHH
Q 039863 216 YLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPL 295 (563)
Q Consensus 216 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpL 295 (563)
|+|+..|+.+++++|+++|++++..+..|.+|++.++..+ ..+.+.+.... .++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~------------~~~~~~~~~~~--------------~~~ 182 (351)
T 3utm_A 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE------------LRERLTYEFKG--------------HSL 182 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH------------HHHHHHHHHHH--------------HHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh------------hHHHHHhhhcc--------------cHH
Confidence 9999999999999999999999999999999999999877 67777776653 478
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhc---CCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCCh
Q 039863 296 HLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGK---GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSR 372 (563)
Q Consensus 296 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 372 (563)
..++..++.+.++.++...... ...+..|.||||+|+.. +..+++++|++.+.+. +.+|..|+||||+|+.+++.
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~ 260 (351)
T 3utm_A 183 LQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHN 260 (351)
T ss_dssp HHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCH
Confidence 8899999999999998876544 45678899999999998 5589999999998775 77899999999999999999
Q ss_pred HHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCc-hhhhccCcccCccccccCCCCHHHHHHh
Q 039863 373 RTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDRLAFNHQNNSAEDIIRS 436 (563)
Q Consensus 373 ~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~-~~~~l~~~g~d~~~~n~~g~t~l~~a~~ 436 (563)
+++++|++. |+++|.+|..|+||||+|+..++. ++++|++.|+|++.+|..|+||+++|..
T Consensus 261 ~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 261 DVMEVLHKH---GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCH
T ss_pred HHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhH
Confidence 999999998 899999999999999999999954 6699999999999999999999999843
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-41 Score=327.07 Aligned_cols=264 Identities=23% Similarity=0.237 Sum_probs=242.5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 039863 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYD 206 (563)
Q Consensus 127 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 206 (563)
.|.||||.|+..|+.++|++|++.|++... ..+..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 67 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF---------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-L 67 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC---------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCccc---------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-c
Confidence 477999999999999999999999987543 237789999999999999999999999999887 4
Q ss_pred cCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCcc
Q 039863 207 ANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTK 286 (563)
Q Consensus 207 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~ 286 (563)
.+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..+ +.+++++|++. +.+++.
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~--g~~~~~ 133 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG------------KVKALKFLYKR--GANVNL 133 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT------------CHHHHHHHHHT--TCCTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhC------------CHHHHHHHHHh--CCCccc
Confidence 7889999999999999999999999999999999999999999999999 99999999997 677766
Q ss_pred C----------CCCCCCHHHHHHHcCChHHHHHHHhc-CCCCCccCCCCCChHHHHHHhcCC----HHHHHHHHHhCCCC
Q 039863 287 P----------DQQGWLPLHLAAHLGNYYVVKELLKA-DISAAYKPDNEGKIPLHLAAGKGR----AYTMQELIRSCPSS 351 (563)
Q Consensus 287 ~----------d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~ 351 (563)
. +..|.||||+|+..|+.+++++|++. +.++ ...+..|.||||+|+..++ .+++++|++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC
Confidence 6 77899999999999999999999987 7776 6678999999999999999 99999999998775
Q ss_pred ccccccCCChHHHHHHHcCChHHHHHhhh-CCCcccCCCCCCCCCChHHHHHHHcCCc-hhhhccCcccCcccccc
Q 039863 352 CELVDDRGWNVFHFAAHSGSRRTVEFLLE-NPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDRLAFNH 425 (563)
Q Consensus 352 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~in~~d~~G~TpLh~A~~~~~~-~~~~l~~~g~d~~~~n~ 425 (563)
+.+|..|+||||+|+..++.+++++|++ . |++++.+|..|+||||+|+..+.. ++++|+++|++++.+|.
T Consensus 213 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 213 -NVRGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp -SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS---SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred -CCcCCCCCcHHHHHHHcCCHHHHHHHHhcc---CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 7789999999999999999999999999 5 789999999999999999999954 66999999999998873
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-41 Score=327.30 Aligned_cols=267 Identities=21% Similarity=0.218 Sum_probs=246.2
Q ss_pred CCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHHHc
Q 039863 59 NENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETLLHIAARH 138 (563)
Q Consensus 59 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~ 138 (563)
+|+||||.|+. .| +.+++++|++.+++.....+..|.||||+|+..
T Consensus 4 ~g~~~L~~A~~--------------------------~g--------~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 49 (285)
T 1wdy_A 4 EDNHLLIKAVQ--------------------------NE--------DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49 (285)
T ss_dssp HHHHHHHHHHH--------------------------TT--------CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred ccchHHHHHHH--------------------------cC--------CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Confidence 46789999999 99 999999999999885444488899999999999
Q ss_pred CcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHH
Q 039863 139 GHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLA 218 (563)
Q Consensus 139 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 218 (563)
|+.++|++|++.|+++. ..+..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|
T Consensus 50 g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 112 (285)
T 1wdy_A 50 SREDIVELLLRHGADPV----------------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEA 112 (285)
T ss_dssp TCHHHHHHHHHTTCCTT----------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHH
T ss_pred CCHHHHHHHHHcCCCCc----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHH
Confidence 99999999999998854 478889999999999999999999999999887 4788999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCC
Q 039863 219 AERGYKDVMEDILSTCESPVDH----------GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPD 288 (563)
Q Consensus 219 ~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d 288 (563)
+..|+.+++++|++.+++++.. +..|.||||.|+..+ +.+++++|++. .+.+++..+
T Consensus 113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~-~~~~~~~~~ 179 (285)
T 1wdy_A 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG------------HVEVLKILLDE-MGADVNACD 179 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT------------CHHHHHHHHHT-SCCCTTCCC
T ss_pred HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC------------CHHHHHHHHHh-cCCCCCccC
Confidence 9999999999999999998876 778999999999999 99999999986 688999999
Q ss_pred CCCCCHHHHHHHcCC----hHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHH
Q 039863 289 QQGWLPLHLAAHLGN----YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFH 364 (563)
Q Consensus 289 ~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 364 (563)
..|.||||+|+..++ .+++++|++.|.++ ..++..|.||||+|+..|+.+++++|++..+..++.+|..|+||||
T Consensus 180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~ 258 (285)
T 1wdy_A 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258 (285)
T ss_dssp TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHH
Confidence 999999999999999 89999999999988 5668999999999999999999999999656666889999999999
Q ss_pred HHHHcCChHHHHHhhhCCCcccCCCCCCC
Q 039863 365 FAAHSGSRRTVEFLLENPSLGNLMNEKNY 393 (563)
Q Consensus 365 ~A~~~~~~~iv~~Ll~~~~~~~~in~~d~ 393 (563)
+|+..++.+++++|+++ |++++.+|.
T Consensus 259 ~A~~~~~~~i~~~Ll~~---Ga~~~~~d~ 284 (285)
T 1wdy_A 259 LAVELKLKKIAELLCKR---GASTDCGDL 284 (285)
T ss_dssp HHHHTTCHHHHHHHHHH---SSCSCCSSC
T ss_pred HHHHcCcHHHHHHHHHc---CCCCCcccc
Confidence 99999999999999999 889998874
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.7e-41 Score=334.42 Aligned_cols=327 Identities=20% Similarity=0.171 Sum_probs=267.5
Q ss_pred hhhhchhhHHHHHHHHHcCChhhhhhhhhc---cccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCC
Q 039863 22 VREKNIQLMDNLYEAAVEGHVGKFEEHKAV---LHQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSS 98 (563)
Q Consensus 22 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~---~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 98 (563)
....+..+.++|+.||..|+++.+++|+.. +++..+..|+||||+|+. .|
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~--------------------------~g- 69 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG--------------------------YN- 69 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHH--------------------------TT-
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH--------------------------cC-
Confidence 445566777899999999999999999886 455588999999999999 99
Q ss_pred chhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCC
Q 039863 99 DDREVIRGENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD 178 (563)
Q Consensus 99 ~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 178 (563)
+.+++++|++.+.+ ++.++..|.||||+|+..|+.++|++|++.|++++ ..+..|.
T Consensus 70 -------~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~----------------~~~~~g~ 125 (351)
T 3utm_A 70 -------RVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN----------------AMDLWQF 125 (351)
T ss_dssp -------CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------------CCCTTCC
T ss_pred -------CHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC----------------CCCCCCC
Confidence 99999999999877 67889999999999999999999999999998854 4788999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhcccc
Q 039863 179 TALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTL 258 (563)
Q Consensus 179 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 258 (563)
||||+|+..|+.+++++|++.+.+.. ..+..|.+|+++|+..+..+.+.+.+.. ++++.++..+
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~--- 189 (351)
T 3utm_A 126 TPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREA--- 189 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTT---
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhc---
Confidence 99999999999999999999999887 4788999999999998888888887653 4567777777
Q ss_pred chhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHc---CChHHHHHHHhcCCCCCccCCCCCChHHHHHHhc
Q 039863 259 QTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHL---GNYYVVKELLKADISAAYKPDNEGKIPLHLAAGK 335 (563)
Q Consensus 259 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 335 (563)
..+.+..++.. .......+..|.||||+|+.. +..+++++|++.|.++ +..+..|.||||+|+..
T Consensus 190 ---------~~~~~~~~l~~--~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 257 (351)
T 3utm_A 190 ---------DLAKVKKTLAL--EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAER 257 (351)
T ss_dssp ---------CHHHHHHHTTT--CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred ---------cHHHHHHHHHh--hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHc
Confidence 78888888876 455556778899999999998 5578999999999887 56688999999999999
Q ss_pred CCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCchhhhccC
Q 039863 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIKSFVCH 415 (563)
Q Consensus 336 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~~~~~l~~ 415 (563)
|+.+++++|++++.+. +.+|..|+||||+|+.+++.+++++|++. |++++.+|..|+||||+|.. .+.++|.+
T Consensus 258 g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~g~tal~~a~~---~~~~~l~~ 330 (351)
T 3utm_A 258 AHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQGFTAAQMGNE---AVQQILSE 330 (351)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHSCH---HHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCCCCChhhhhhH---HHHHHHHh
Confidence 9999999999988765 77899999999999999999999999998 88999999999999999832 34455554
Q ss_pred cccCccccccCCCCHHHHHHhc
Q 039863 416 PKVDRLAFNHQNNSAEDIIRSK 437 (563)
Q Consensus 416 ~g~d~~~~n~~g~t~l~~a~~~ 437 (563)
.+. .....+.+++..|.+.
T Consensus 331 ~~~---~~~~~~~~~l~~A~~~ 349 (351)
T 3utm_A 331 STP---MRTSDVDYRLLEASKA 349 (351)
T ss_dssp C---------------------
T ss_pred ccc---cccCcceeehhhhhcc
Confidence 432 2344555666665543
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-42 Score=342.36 Aligned_cols=312 Identities=18% Similarity=0.200 Sum_probs=228.4
Q ss_pred HHHHHHHcCChhhhhhhhhccccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHH
Q 039863 32 NLYEAAVEGHVGKFEEHKAVLHQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVR 111 (563)
Q Consensus 32 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~ 111 (563)
+|..|+..|+.+.+..+++....+. ...+++.-+.. .| +.++++
T Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------------~g--------~~~~~~ 83 (373)
T 2fo1_E 40 SLLEASYDGYIKRQRNELQHYSLYP--NPQGYGNGNDF--------------------------LG--------DFNHTN 83 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCccccchhhhhhhhcccc--CccccCCCCCc--------------------------cc--------cccccc
Confidence 8899999999999998887643332 22345566666 78 899998
Q ss_pred HHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCC-CCCCcHHHHHHHcCCH
Q 039863 112 VILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTN-EAKDTALHEAVRYNQV 190 (563)
Q Consensus 112 ~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~g~~ 190 (563)
+++.. ..+..|.||||+|+..|+ +++++|+... ++..+ ..|.||||+|+..|+.
T Consensus 84 ~~~~~------~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~------------------~n~~d~~~g~t~Lh~Aa~~g~~ 138 (373)
T 2fo1_E 84 LQIPT------EPEPESPIKLHTEAAGSY-AITEPITRES------------------VNIIDPRHNRTVLHWIASNSSA 138 (373)
T ss_dssp ----------------CCCHHHHHHHSSS-CCCSCCSTTT------------------TTTCCCSSCCCHHHHHHCTTCC
T ss_pred ccccc------CCCCCCccHHHHHhcCCc-hHHHHhcccc------------------ccccCCcCCCCHHHHHHHCCCH
Confidence 88754 357789999999999654 7888775432 23455 7899999999999999
Q ss_pred HHHHHHH--------hcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhh
Q 039863 191 DVVKMLT--------KEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYY 262 (563)
Q Consensus 191 ~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~ 262 (563)
+++++|+ +.|.+++ ..|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 139 ~~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g------- 210 (373)
T 2fo1_E 139 EKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR------- 210 (373)
T ss_dssp SCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCC-------
Confidence 8888776 7788887 47889999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHhccC-CCCCccCCCCCCCHHHHHHHcC---ChHHHHHHHhcCCCCCc-------cCCCCCChHHHH
Q 039863 263 YFFRKDREIIKVLLRSSK-GTQTTKPDQQGWLPLHLAAHLG---NYYVVKELLKADISAAY-------KPDNEGKIPLHL 331 (563)
Q Consensus 263 ~~~~~~~~~~~~Ll~~~~-~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~ 331 (563)
+.+++++|++.+. +.+++..+..|.||||+|+..+ +.+++++|++.|+++.. ..+..|.||||+
T Consensus 211 -----~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~ 285 (373)
T 2fo1_E 211 -----DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285 (373)
T ss_dssp -----CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHH
T ss_pred -----CHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHH
Confidence 9999999998610 1688899999999999999998 89999999999988753 256789999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCC-chh
Q 039863 332 AAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGS-FIK 410 (563)
Q Consensus 332 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~-~~~ 410 (563)
|+..|+.+++++|++.++..++.+|..|+||||+|+.+|+.+++++|++. |++++.+|..|+||||+|+..++ .++
T Consensus 286 A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999998777789999999999999999999999999999 89999999999999999999995 466
Q ss_pred hhccCcccCc
Q 039863 411 SFVCHPKVDR 420 (563)
Q Consensus 411 ~~l~~~g~d~ 420 (563)
++|++++++.
T Consensus 363 ~~Ll~~~a~~ 372 (373)
T 2fo1_E 363 DIFDRCRPER 372 (373)
T ss_dssp HHHHTTC---
T ss_pred HHHHhcCccc
Confidence 9999888763
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=314.40 Aligned_cols=270 Identities=15% Similarity=0.077 Sum_probs=205.0
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 039863 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNL 203 (563)
Q Consensus 124 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 203 (563)
....|.|+||+|+..|+.+.+..++..+......... ....+..++..|.||||+|+..|+.+++++|++.+.++
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL-----LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSEEC-----CCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhh-----hhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 3467899999999999988888877665431100000 00014568899999999999999999999999999988
Q ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCC
Q 039863 204 SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQ 283 (563)
Q Consensus 204 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 283 (563)
. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|++. +.+
T Consensus 86 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--g~~ 150 (285)
T 3d9h_A 86 N-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG------------SWDCVNLLLQH--GAS 150 (285)
T ss_dssp C-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT------------CHHHHHHHHHT--TCC
T ss_pred C-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC------------HHHHHHHHHHC--CCC
Confidence 7 57889999999999999999999999999999999999999999999999 99999999997 666
Q ss_pred CccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHH
Q 039863 284 TTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363 (563)
Q Consensus 284 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 363 (563)
++.. ..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.+.+.. .|..|+|||
T Consensus 151 ~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L 226 (285)
T 3d9h_A 151 VQPE-SDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPL 226 (285)
T ss_dssp SSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHH
T ss_pred CCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHH
Confidence 6654 45999999999999999999999999887 5668899999999999999999999999988763 488999999
Q ss_pred HHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCchhhhccCc-ccCcc
Q 039863 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIKSFVCHP-KVDRL 421 (563)
Q Consensus 364 h~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~~~~~l~~~-g~d~~ 421 (563)
|+|+..++.+++++|++. |++++.+|.+|+||||+|+.. ..++++|+++ |+++.
T Consensus 227 ~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~-~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 227 HAVVRTASEELACLLMDF---GADTQAKNAEGKRPVELVPPE-SPLAQLFLEREGASLP 281 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTT-SHHHHHHHHHC-----
T ss_pred HHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHhcCc-cHHHHHHHHhhccCCC
Confidence 999999999999999998 899999999999999999944 4455666655 76654
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.3e-39 Score=308.56 Aligned_cols=255 Identities=19% Similarity=0.159 Sum_probs=207.8
Q ss_pred cCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCc----------hhhhccc
Q 039863 56 LTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCP----------ILLLKAN 125 (563)
Q Consensus 56 ~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~----------~~l~~~~ 125 (563)
....|.|+||+|+. .| +.+.+..++...+ ..+...+
T Consensus 11 ~~~~~~~~lH~Aa~--------------------------~g--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 56 (285)
T 3d9h_A 11 SSGLVPRGSHMASM--------------------------DG--------KQGGMDGSKPAGPRDFPGIRLLSNPLMGDA 56 (285)
T ss_dssp -----------------------------------------------------------------CCSEECCCCTTCSSS
T ss_pred cchHHHHHHHHHhh--------------------------cC--------CCCCcccCCCCccccccchhhhhCcccCCC
Confidence 45678999999999 99 8766666654432 2346688
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 039863 126 AKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSY 205 (563)
Q Consensus 126 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 205 (563)
..|.||||+||..|+.++|++|++.|.+.+ .++..|.||||+|+..|+.+++++|++.+.++.
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~- 119 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVN----------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN- 119 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-
Confidence 899999999999999999999999998743 478899999999999999999999999999887
Q ss_pred ccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCc
Q 039863 206 DANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTT 285 (563)
Q Consensus 206 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 285 (563)
..+..|.||||+|+..|+.+++++|++.+++++..+ .|.||||.|+..+ +.+++++|++. +.+++
T Consensus 120 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g------------~~~~v~~Ll~~--g~~~~ 184 (285)
T 3d9h_A 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG------------HVECVNSLIAY--GGNID 184 (285)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT------------CHHHHHHHHHT--TCCTT
T ss_pred CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC------------CHHHHHHHHHC--CCCCC
Confidence 478899999999999999999999999999877544 5999999999999 99999999997 88999
Q ss_pred cCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHH
Q 039863 286 KPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHF 365 (563)
Q Consensus 286 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 365 (563)
..|..|.||||+|+..|+.+++++|++.|+++. .+..|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+
T Consensus 185 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~ 261 (285)
T 3d9h_A 185 HKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVEL 261 (285)
T ss_dssp CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGG
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHH
Confidence 999999999999999999999999999999885 4889999999999999999999999998765 7899999999999
Q ss_pred HHHcCChHHHHHhhhC
Q 039863 366 AAHSGSRRTVEFLLEN 381 (563)
Q Consensus 366 A~~~~~~~iv~~Ll~~ 381 (563)
|+ ++.+++++|+++
T Consensus 262 A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 262 VP--PESPLAQLFLER 275 (285)
T ss_dssp SC--TTSHHHHHHHHH
T ss_pred hc--CccHHHHHHHHh
Confidence 99 567999999997
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-39 Score=324.93 Aligned_cols=259 Identities=21% Similarity=0.216 Sum_probs=201.2
Q ss_pred hhchhhHHHHHHHHHcCChhhhhhhhhccccccC-CCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhh
Q 039863 24 EKNIQLMDNLYEAAVEGHVGKFEEHKAVLHQILT-PNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDRE 102 (563)
Q Consensus 24 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 102 (563)
..+..+.++||.||..| .+++++|+..+++..+ ..|+||||+|+. +|
T Consensus 89 ~~~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~--------------------------~g----- 136 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGS-YAITEPITRESVNIIDPRHNRTVLHWIAS--------------------------NS----- 136 (373)
T ss_dssp -----CCCHHHHHHHSS-SCCCSCCSTTTTTTCCCSSCCCHHHHHHC--------------------------TT-----
T ss_pred CCCCCCccHHHHHhcCC-chHHHHhccccccccCCcCCCCHHHHHHH--------------------------CC-----
Confidence 45667778999999955 5899999988899888 799999999999 99
Q ss_pred hhhhhhHHHHHH--------HhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCC
Q 039863 103 VIRGENFVRVIL--------EMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTN 174 (563)
Q Consensus 103 ~~~~~~~v~~Ll--------~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (563)
+.+++++|+ +.+.+ ++.+|..|.||||+||..|+.++|++|++.|+++. ..+
T Consensus 137 ---~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~----------------~~~ 196 (373)
T 2fo1_E 137 ---SAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT----------------IYN 196 (373)
T ss_dssp ---CCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC----------------CCC
T ss_pred ---CHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc----------------ccC
Confidence 888877776 55555 67889999999999999999999999999999854 478
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcC---CCCccccCcCCCcHHHHHHHcC---CHHHHHHHHhcCCCCCC--------C
Q 039863 175 EAKDTALHEAVRYNQVDVVKMLTKED---PNLSYDANEAGETPLYLAAERG---YKDVMEDILSTCESPVD--------H 240 (563)
Q Consensus 175 ~~g~t~L~~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~--------~ 240 (563)
..|.||||+|+..|+.+++++|++.+ .++. ..+..|.||||+|+..+ +.+++++|++.|++++. .
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~ 275 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSS
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcc
Confidence 89999999999999999999999987 4555 47889999999999998 89999999999988875 3
Q ss_pred CCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCcc
Q 039863 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYK 320 (563)
Q Consensus 241 ~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 320 (563)
+..|.||||.|+..+ +.+++++|++. .+.+++..|..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus 276 d~~g~t~Lh~A~~~g------------~~~~v~~Ll~~-~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~ 341 (373)
T 2fo1_E 276 KYKGRTALHYAAQVS------------NMPIVKYLVGE-KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EA 341 (373)
T ss_dssp SCCCCCTHHHHHSSC------------CHHHHHHHHHH-SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC
T ss_pred cccCCCHHHHHHHhC------------CHHHHHHHHHh-cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cC
Confidence 446666666666666 66666666665 34666666666666666666666666666666666655 34
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHHhCC
Q 039863 321 PDNEGKIPLHLAAGKGRAYTMQELIRSCP 349 (563)
Q Consensus 321 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 349 (563)
.|..|.||||+|+..|+.+++++|+++++
T Consensus 342 ~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 342 VDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp CCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 45666666666666666666666666554
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=300.78 Aligned_cols=240 Identities=16% Similarity=0.107 Sum_probs=216.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhc
Q 039863 176 AKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFRE 255 (563)
Q Consensus 176 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 255 (563)
.|+||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 58999999999999999999999999887 57889999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhc
Q 039863 256 YTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGK 335 (563)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 335 (563)
+.+++++|++. +.+++. +..|.||||+|+..|+.+++++|++.|.++ ...+..|.||||+|+..
T Consensus 81 ------------~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 144 (261)
T 2xai_A 81 ------------SWDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACEN 144 (261)
T ss_dssp ------------CHHHHHHHHHT--TCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHT
T ss_pred ------------CHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHh
Confidence 99999999997 666664 456999999999999999999999999988 56688999999999999
Q ss_pred CCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCchhhhccC
Q 039863 336 GRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIKSFVCH 415 (563)
Q Consensus 336 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~~~~~l~~ 415 (563)
|+.+++++|++.+.+.. .+..|+||||+|+..++.+++++|++. |++++.+|.+|+||||+|+..+. +.++|++
T Consensus 145 ~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpl~~A~~~~~-~~~~ll~ 218 (261)
T 2xai_A 145 QQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDF---GADTQAKNAEGKRPVELVPPESP-LAQLFLE 218 (261)
T ss_dssp TCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTTCT-HHHHHHH
T ss_pred CCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCChhhhcccccc-HHHHHHh
Confidence 99999999999998764 488999999999999999999999999 89999999999999999996665 4555555
Q ss_pred ccc--------CccccccCCCCHHHHHHhcc
Q 039863 416 PKV--------DRLAFNHQNNSAEDIIRSKK 438 (563)
Q Consensus 416 ~g~--------d~~~~n~~g~t~l~~a~~~~ 438 (563)
.+. +++.+|..|.||+|++....
T Consensus 219 ~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 219 REGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp C-CCCCHHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred ccCCccHHHHHHHHHHHHhchhccccCcccC
Confidence 544 67789999999999887643
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=303.49 Aligned_cols=243 Identities=20% Similarity=0.162 Sum_probs=194.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 039863 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYD 206 (563)
Q Consensus 127 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 206 (563)
+|.||||+||..|+.++|++|++.|++++ ..+..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 64 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN----------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-G 64 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS----------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence 57888888888888888888888887643 367788888888888888888888888887776 4
Q ss_pred cCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCcc
Q 039863 207 ANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTK 286 (563)
Q Consensus 207 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~ 286 (563)
.+..|.||||+|+..|+.+++++|++.+++++. +..|.||||.|+..+ +.+++++|++. +.+++.
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--g~~~~~ 129 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRG------------HVECVNSLIAY--GGNIDH 129 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcC------------cHHHHHHHHHc--CCCCCc
Confidence 677888888888888888888888888877764 445888888888888 88888888886 778888
Q ss_pred CCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHH
Q 039863 287 PDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFA 366 (563)
Q Consensus 287 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 366 (563)
.+..|.||||+|+..|+.+++++|++.|+++. .+..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|
T Consensus 130 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A 206 (261)
T 2xai_A 130 KISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELV 206 (261)
T ss_dssp CBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGS
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhc
Confidence 88888888888888888888888888888775 3778888888888888888888888887764 67888888888888
Q ss_pred HHcCChHHHHHhhhCCCc-----ccCCCCCCCCCChHHHHHHHcC
Q 039863 367 AHSGSRRTVEFLLENPSL-----GNLMNEKNYDGNTPLLEHAVSG 406 (563)
Q Consensus 367 ~~~~~~~iv~~Ll~~~~~-----~~~in~~d~~G~TpLh~A~~~~ 406 (563)
+.+ .+++++|++.... ...++.+|..|+||||+|++..
T Consensus 207 ~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 207 PPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp CTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred ccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccC
Confidence 854 4588888886321 1356678889999999988776
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.7e-38 Score=305.02 Aligned_cols=265 Identities=18% Similarity=0.160 Sum_probs=152.1
Q ss_pred hhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 039863 121 LLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 200 (563)
Q Consensus 121 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 200 (563)
++.+|..|.||||+||..|+.++|++|++.|++.. .++.++..|.||||+|+..|+.+++++|++.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 68 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 45678999999999999999999999999988742 25568899999999999999999999999999
Q ss_pred CCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccC
Q 039863 201 PNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSK 280 (563)
Q Consensus 201 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~ 280 (563)
+++. ..+..|.||||+|+..|+.+++++|++.+++......... +..
T Consensus 69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~~------------------------------ 115 (282)
T 1oy3_D 69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY--LTQ------------------------------ 115 (282)
T ss_dssp CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH--hhc------------------------------
Confidence 9987 4788999999999999999999999999876432211100 000
Q ss_pred CCCCccCCCCCCCHHHHHHHcCChHH-HHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccc-cC
Q 039863 281 GTQTTKPDQQGWLPLHLAAHLGNYYV-VKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVD-DR 358 (563)
Q Consensus 281 ~~~~~~~d~~g~tpLh~A~~~g~~~~-v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~ 358 (563)
........+.++++.++..+.... ...+...+.++ ...+..|.||||+|+..|+.+++++|++++.+. +..+ ..
T Consensus 116 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~ 191 (282)
T 1oy3_D 116 --SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTC 191 (282)
T ss_dssp ------------------------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTT
T ss_pred --ccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCC
Confidence 000011122333333333322222 12222223222 334555555555555555555555555555444 2233 23
Q ss_pred CChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCC-chhhhccCcccCccccccCCCCHHHHHHhc
Q 039863 359 GWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGS-FIKSFVCHPKVDRLAFNHQNNSAEDIIRSK 437 (563)
Q Consensus 359 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~-~~~~~l~~~g~d~~~~n~~g~t~l~~a~~~ 437 (563)
|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+..+. .++++|+++|++++.+|..|.||++++.+.
T Consensus 192 g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 192 GRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred CcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 55555555555555555555555 55555555555555555555553 234555555555555555555555555544
Q ss_pred c
Q 039863 438 K 438 (563)
Q Consensus 438 ~ 438 (563)
.
T Consensus 269 ~ 269 (282)
T 1oy3_D 269 S 269 (282)
T ss_dssp -
T ss_pred c
Confidence 3
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.7e-38 Score=296.58 Aligned_cols=247 Identities=23% Similarity=0.255 Sum_probs=156.0
Q ss_pred cccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcH
Q 039863 52 LHQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETL 131 (563)
Q Consensus 52 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~ 131 (563)
+++.+|..|+||||+|+..+....+ ...+...+ +.+++++|++.+++.....+..|.||
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~-------------~~~~~~~~--------~~~~v~~Ll~~g~~~~~~~d~~g~t~ 60 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLET-------------GNSEEEED--------APAVISDFIYQGASLHNQTDRTGETA 60 (253)
T ss_dssp -----------------------------------------------------------------------CCCTTSCCH
T ss_pred CCCCCCCCCCcHHHHHHhccccccc-------------cchhhcCC--------ChHHHHHHHHccCCcccccCCCCCcH
Confidence 4677899999999999983211000 00112244 78888888888887666678888888
Q ss_pred HHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCC
Q 039863 132 LHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAG 211 (563)
Q Consensus 132 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g 211 (563)
||+||..|+.++|++|++.|+++. ..+..|.||||+|+..|+.+++++|++.++......+..|
T Consensus 61 L~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 124 (253)
T 1yyh_A 61 LHLAARYSRSDAAKRLLEASADAN----------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Confidence 888888888888888888887744 3677888888888888888888888888773333567788
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCC
Q 039863 212 ETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQG 291 (563)
Q Consensus 212 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g 291 (563)
.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..+ +.+++++|++. +.+++..+..|
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~------------~~~~v~~Ll~~--ga~~~~~~~~g 190 (253)
T 1yyh_A 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN------------NVDAAVVLLKN--GANKDMQNNRE 190 (253)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT------------CHHHHHHHHHT--TCCTTCCCTTS
T ss_pred CcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCCcCCCC
Confidence 88888888888888888888888888888888888888888887 78888888876 77777778888
Q ss_pred CCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCC
Q 039863 292 WLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPS 350 (563)
Q Consensus 292 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 350 (563)
.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+..|+.+++++|....+.
T Consensus 191 ~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 191 ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 88888888888888888888887776 45577788888888888888888877766543
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-37 Score=295.30 Aligned_cols=228 Identities=22% Similarity=0.249 Sum_probs=175.2
Q ss_pred hccCCCCCCcHHHHHHHcC-------------CHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 039863 170 LGTTNEAKDTALHEAVRYN-------------QVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES 236 (563)
Q Consensus 170 l~~~~~~g~t~L~~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 236 (563)
++.+|..|.||||+|+..| +.+++++|++.++++....+..|.||||+|+..|+.+++++|++.|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4568899999999999977 899999999999998777789999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCC
Q 039863 237 PVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADIS 316 (563)
Q Consensus 237 ~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 316 (563)
++..+..|.||||.|+..+ +.+++++|++. ...+++..+..|.||||+|+..|+.+++++|++.|++
T Consensus 83 ~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 149 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSAD------------AQGVFQILIRN-RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHT------------CHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence 9999999999999999999 99999999997 4458888999999999999999999999999999988
Q ss_pred CCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCC
Q 039863 317 AAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGN 396 (563)
Q Consensus 317 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~ 396 (563)
+ +..+..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..++.+++++|++. |++++.+|..|+
T Consensus 150 ~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~ 224 (253)
T 1yyh_A 150 V-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDR 224 (253)
T ss_dssp T-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCC
T ss_pred C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCC
Confidence 7 566889999999999999999999999998775 77899999999999999999999999999 889999999999
Q ss_pred hHHHHHHHcCCc-hhhhccC
Q 039863 397 TPLLEHAVSGSF-IKSFVCH 415 (563)
Q Consensus 397 TpLh~A~~~~~~-~~~~l~~ 415 (563)
||||+|+..++. ++++|..
T Consensus 225 tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 225 LPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp CHHHHHHHTTCHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHH
Confidence 999999999954 4465543
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.2e-38 Score=316.16 Aligned_cols=275 Identities=18% Similarity=0.177 Sum_probs=211.9
Q ss_pred hhhhchhhHHHHHHHHHcCChhhhhhhhhcc--ccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCc
Q 039863 22 VREKNIQLMDNLYEAAVEGHVGKFEEHKAVL--HQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSD 99 (563)
Q Consensus 22 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~--~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 99 (563)
....+..++||||.||..|++++|++|++.| ++..+..|.||||+|+. .|
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~--------------------------~g-- 64 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK--------------------------FG-- 64 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH--------------------------HC--
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHH--------------------------cC--
Confidence 4556888999999999999999999999995 45588999999999999 99
Q ss_pred hhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHh----cCCCCCCCC-chhHHHHHHHhccCC
Q 039863 100 DREVIRGENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAE----CKKPHQNNP-EEGVAAARLMLGTTN 174 (563)
Q Consensus 100 ~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~----~~~~~~~~~-~~~~~~~~~~l~~~~ 174 (563)
+.+++++|++.+.+ ..+..|.||||+|+..|+.++|++|++. +.++..... ..............+
T Consensus 65 ------~~~~v~~Ll~~g~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (364)
T 3ljn_A 65 ------CVDTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH 135 (364)
T ss_dssp ------CHHHHHHHHHHCCC---CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred ------CHHHHHHHHHCCCC---ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Confidence 99999999999884 2334899999999999999999999998 443210000 000000000112266
Q ss_pred CCCCcHHHHHHHcC--CHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCcH
Q 039863 175 EAKDTALHEAVRYN--QVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES-----PVDHGPMGRTA 247 (563)
Q Consensus 175 ~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~ 247 (563)
..|.||||+|+..| +.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||
T Consensus 136 ~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~ 214 (364)
T 3ljn_A 136 CKGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214 (364)
T ss_dssp ESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT
T ss_pred CCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH
Confidence 77889999999999 8999999999888876 4678889999999999999999999988887 77888888888
Q ss_pred HHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCC---------
Q 039863 248 LHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAA--------- 318 (563)
Q Consensus 248 Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--------- 318 (563)
||+|+..+ +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.+....
T Consensus 215 L~~A~~~g------------~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 280 (364)
T 3ljn_A 215 LHWAILIN------------WEDVAMRFVEM--GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280 (364)
T ss_dssp THHHHTTT------------CHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSS
T ss_pred HHHHHHcC------------CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCc
Confidence 88888888 88888888886 78888888888888888888888888888888764321
Q ss_pred --ccCCCCCChHHHHHHhcCCHHHHHHHHHhC
Q 039863 319 --YKPDNEGKIPLHLAAGKGRAYTMQELIRSC 348 (563)
Q Consensus 319 --~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 348 (563)
...+..+++|+++|+..|+.+.+..|+..+
T Consensus 281 ~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp SSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 113445666666666666666666665554
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-38 Score=317.23 Aligned_cols=209 Identities=22% Similarity=0.236 Sum_probs=106.1
Q ss_pred hhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHH
Q 039863 106 GENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV 185 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~ 185 (563)
+.++|++|++.+.+ ++..+..|.||||+||..|+.++|++|++.|++. .+..|.||||+|+
T Consensus 32 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 32 QTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH------------------SLWHGQKPIHLAV 92 (364)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC------------------CCBTTBCHHHHHH
T ss_pred CHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc------------------cccCCCCHHHHHH
Confidence 55555555555443 3445555555555555555555555555555431 1224555555555
Q ss_pred HcCCHHHHHHHHhc----CCCCcc----------------ccCcCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCC
Q 039863 186 RYNQVDVVKMLTKE----DPNLSY----------------DANEAGETPLYLAAERG--YKDVMEDILSTCESPVDHGPM 243 (563)
Q Consensus 186 ~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~ 243 (563)
..|+.+++++|++. +.+... ..+..|.||||+|+..| +.+++++|++.|++++..+..
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 55555555555554 332221 03334555555555555 555555555555555555555
Q ss_pred CCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCC-----CccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCC
Q 039863 244 GRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQ-----TTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAA 318 (563)
Q Consensus 244 g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 318 (563)
|.||||+|+..+ +.+++++|++. +.+ ++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus 173 g~t~L~~A~~~g------------~~~~v~~Ll~~--g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~- 237 (364)
T 3ljn_A 173 DETPLMRAMEFR------------NREALDLMMDT--VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV- 237 (364)
T ss_dssp SCCHHHHHHHTT------------CHHHHHHHHHH--CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-
T ss_pred CCCHHHHHHHcC------------CHHHHHHHHhc--ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence 555555555555 55555555554 333 4444555555555555555555555555555444
Q ss_pred ccCCCCCChHHHHHHhcCCHHHHHHHHHhC
Q 039863 319 YKPDNEGKIPLHLAAGKGRAYTMQELIRSC 348 (563)
Q Consensus 319 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 348 (563)
+..|..|.||||+|+..|+.+++++|++++
T Consensus 238 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267 (364)
T ss_dssp TCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence 333445555555555555555555555543
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-37 Score=298.30 Aligned_cols=232 Identities=19% Similarity=0.143 Sum_probs=174.6
Q ss_pred hccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC--ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 039863 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNL--SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247 (563)
Q Consensus 170 l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 247 (563)
++.+|..|.||||+|+..|+.++|++|++.+++. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4568999999999999999999999999988772 33578899999999999999999999999999999999999999
Q ss_pred HHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCCh
Q 039863 248 LHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKI 327 (563)
Q Consensus 248 Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 327 (563)
||+|+..+ +.+++++|++. +.......... ++.... ......+.+
T Consensus 82 L~~A~~~~------------~~~~v~~Ll~~--~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~ 126 (282)
T 1oy3_D 82 LHLACRVR------------AHTCACVLLQP--RPSHPRDASDT------------------YLTQSQ---DCTPDTSHA 126 (282)
T ss_dssp HHHHTTTT------------CHHHHHHHSSS--CCSSCCCC---------------------------------------
T ss_pred HHHHHHcC------------CcchhHhhhcc--CCCCchhhHHH------------------Hhhccc---ccCcchhcc
Confidence 99999999 99999999987 43332211110 011111 112345677
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCC-CChHHHHHHHcC
Q 039863 328 PLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYD-GNTPLLEHAVSG 406 (563)
Q Consensus 328 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~-G~TpLh~A~~~~ 406 (563)
+++.++..+....+..++......++..|..|+||||+|+..|+.+++++|++. |++++.++.. |+||||+|+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp -----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred hhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCcCHHHHHHHcC
Confidence 888888776666555555555555678899999999999999999999999998 8899999865 999999999999
Q ss_pred Cc-hhhhccCcccCccccccCCCCHHHHHHhccc
Q 039863 407 SF-IKSFVCHPKVDRLAFNHQNNSAEDIIRSKKV 439 (563)
Q Consensus 407 ~~-~~~~l~~~g~d~~~~n~~g~t~l~~a~~~~~ 439 (563)
.. ++++|+++|+|++.+|..|.||+++|...+.
T Consensus 204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence 54 6699999999999999999999999998764
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.2e-36 Score=286.38 Aligned_cols=232 Identities=23% Similarity=0.206 Sum_probs=201.7
Q ss_pred hccCCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 039863 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTK----EDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGR 245 (563)
Q Consensus 170 l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 245 (563)
++.+|..|.||||+|+..|+.+++++|++ .+.++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 34688999999999999999999999997 566665 4788899999999999999999999999999999999999
Q ss_pred cHHHHHHhhccccchhhhhhcccHHHHHHHHhccC--CCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCC
Q 039863 246 TALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSK--GTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDN 323 (563)
Q Consensus 246 t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 323 (563)
||||.|+..+ +.+++++|++.+. ..+++..+..|.||||+|+..|+.+++++|++.+.++....+.
T Consensus 81 t~l~~A~~~~------------~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 148 (241)
T 1k1a_A 81 TAAHLACEHR------------SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148 (241)
T ss_dssp CHHHHHHHTT------------CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CHHHHHHHcC------------CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Confidence 9999999999 9999999999722 1278888999999999999999999999999999988555448
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHH
Q 039863 324 EGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHA 403 (563)
Q Consensus 324 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~ 403 (563)
.|.||||+|+..|+.+++++|++++.+. +..|..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+
T Consensus 149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 149 SGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVAR 224 (241)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHH
Confidence 8999999999999999999999998775 77899999999999999999999999998 8999999999999999999
Q ss_pred HcC-CchhhhccCccc
Q 039863 404 VSG-SFIKSFVCHPKV 418 (563)
Q Consensus 404 ~~~-~~~~~~l~~~g~ 418 (563)
..+ ..+++.|.++++
T Consensus 225 ~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 225 SRRVIDILRGKATRPA 240 (241)
T ss_dssp SHHHHHHHTC------
T ss_pred hcCcHHHHhhhccCCC
Confidence 888 345566665543
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-36 Score=285.72 Aligned_cols=228 Identities=25% Similarity=0.283 Sum_probs=204.0
Q ss_pred hhcccCCCCcHHHHHHHcCcHHHHHHHHH----hcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHH
Q 039863 121 LLKANAKGETLLHIAARHGHYDIVKVLIA----ECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKML 196 (563)
Q Consensus 121 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~L 196 (563)
.+.+|..|.||||+||..|+.++|++|++ .+.+ ++..+..|.||||+|+..|+.+++++|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~L 65 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE----------------LDIYNNLRQTPLHLAVITTLPSVVRLL 65 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------CCcccccCCCHHHHHHHcCCHHHHHHH
Confidence 45688999999999999999999999998 4554 345788999999999999999999999
Q ss_pred HhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHH
Q 039863 197 TKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCE----SPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREII 272 (563)
Q Consensus 197 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~ 272 (563)
++.+.++. ..+..|.||||+|+..|+.+++++|++.++ +++..+..|.||||.|+..+ +.+++
T Consensus 66 l~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~------------~~~~~ 132 (241)
T 1k1a_A 66 VTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE------------CQETV 132 (241)
T ss_dssp HHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT------------CHHHH
T ss_pred HHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcC------------CHHHH
Confidence 99999887 468899999999999999999999999997 77888999999999999999 99999
Q ss_pred HHHHhccCCCCCccCC-CCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCC
Q 039863 273 KVLLRSSKGTQTTKPD-QQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSS 351 (563)
Q Consensus 273 ~~Ll~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 351 (563)
++|++. +.+++..+ ..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++++.+.
T Consensus 133 ~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 209 (241)
T 1k1a_A 133 QLLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209 (241)
T ss_dssp HHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHc--CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence 999997 88888888 78999999999999999999999999988 566899999999999999999999999998775
Q ss_pred ccccccCCChHHHHHHHcCChHHHHHhhhC
Q 039863 352 CELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 352 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 381 (563)
+.+|..|+||||+|+..++.++++.|.+.
T Consensus 210 -~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 210 -SLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp -TCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred -CCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 77899999999999999999999999886
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.7e-36 Score=283.40 Aligned_cols=228 Identities=22% Similarity=0.263 Sum_probs=210.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 039863 174 NEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAF 253 (563)
Q Consensus 174 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 253 (563)
+..+.+|||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 34578999999999999999999999887766788999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHH
Q 039863 254 REYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAA 333 (563)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 333 (563)
.+ +.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+
T Consensus 83 ~~------------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~ 147 (231)
T 3aji_A 83 AG------------XDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAA 147 (231)
T ss_dssp HT------------CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cC------------HHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 99 99999999997 8889999999999999999999999999999999887 556889999999999
Q ss_pred hcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC-Cchhhh
Q 039863 334 GKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG-SFIKSF 412 (563)
Q Consensus 334 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~-~~~~~~ 412 (563)
..|+.+++++|++.+.+. +.+|..|+||||+|+..++.+++++|++. |++++.+|..|.||||+|+..+ ..++++
T Consensus 148 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~l 223 (231)
T 3aji_A 148 AKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRL 223 (231)
T ss_dssp HHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence 999999999999987765 77899999999999999999999999999 8899999999999999998877 445688
Q ss_pred ccCcccCc
Q 039863 413 VCHPKVDR 420 (563)
Q Consensus 413 l~~~g~d~ 420 (563)
|.+.|+++
T Consensus 224 L~~~~a~i 231 (231)
T 3aji_A 224 AEGEEASM 231 (231)
T ss_dssp HHHHHHCC
T ss_pred HccccccC
Confidence 88777653
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.7e-36 Score=280.03 Aligned_cols=215 Identities=27% Similarity=0.327 Sum_probs=113.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 039863 173 TNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAA 252 (563)
Q Consensus 173 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~ 252 (563)
++..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 34444444444444444444444444444433 23344444444444444444444444444444444444555555555
Q ss_pred hhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 039863 253 FREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLA 332 (563)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 332 (563)
..+ +.+++++|++. .+.+++..+..|.||||+|+..|+.+++++|++.|.++ ...+..|.||||+|
T Consensus 86 ~~~------------~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A 151 (237)
T 3b7b_A 86 KKG------------HYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWA 151 (237)
T ss_dssp HTT------------CHHHHHHHHTT-TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred HcC------------CHHHHHHHHhC-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHH
Confidence 544 45555555544 22444455555555555555555555555555555544 33455555555555
Q ss_pred HhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC
Q 039863 333 AGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG 406 (563)
Q Consensus 333 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~ 406 (563)
+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|+++ |++++.+|.+|+||||+|+..+
T Consensus 152 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 152 AFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp HHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTC
T ss_pred HHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHH
Confidence 5555555555555555443 44555566666666666666666666655 5556666666666666666555
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.3e-36 Score=281.76 Aligned_cols=226 Identities=25% Similarity=0.279 Sum_probs=171.2
Q ss_pred hcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 039863 122 LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDP 201 (563)
Q Consensus 122 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 201 (563)
+..+..|.||||+||..|+.++|++|++.|.+.. ..+..|.||||+|+..|+.+++++|++.+.
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID----------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC----------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 4466777788888888888888888888777643 356677788888888888888888887777
Q ss_pred CCccccCcCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccC
Q 039863 202 NLSYDANEAGETPLYLAAERGYKDVMEDILSTC-ESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSK 280 (563)
Q Consensus 202 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~ 280 (563)
++. ..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||.|+..+ +.+++++|++.
T Consensus 69 ~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~-- 133 (237)
T 3b7b_A 69 LVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK------------HVDLVKLLLSK-- 133 (237)
T ss_dssp CCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--
T ss_pred CCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC------------CHHHHHHHHHC--
Confidence 665 35667778888888888888888888777 666777777888888888777 77888888875
Q ss_pred CCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCC
Q 039863 281 GTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGW 360 (563)
Q Consensus 281 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 360 (563)
+.+++..+..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|+.+++++|++++.+. +.+|..|+
T Consensus 134 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~ 211 (237)
T 3b7b_A 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGE 211 (237)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSC
T ss_pred CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC-CccCCCCC
Confidence 7777777777888888888888888888888877776 445777888888888888888888888776664 66777888
Q ss_pred hHHHHHHHcCChHHHHHhhh
Q 039863 361 NVFHFAAHSGSRRTVEFLLE 380 (563)
Q Consensus 361 t~Lh~A~~~~~~~iv~~Ll~ 380 (563)
||||+|+.+++...+..|++
T Consensus 212 t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 212 TPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp CHHHHSCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 88888888887765555544
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.3e-36 Score=281.32 Aligned_cols=222 Identities=25% Similarity=0.280 Sum_probs=121.4
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 039863 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDA 207 (563)
Q Consensus 128 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~ 207 (563)
+.||||.|+..|+.++|++|++.+.. .+...+..|.||||+|+..|+.+++++|++.+.++. ..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~ 69 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKS---------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DK 69 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchh---------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-Cc
Confidence 44555555555555555555554432 123344555555555555555555555555555444 24
Q ss_pred CcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccC
Q 039863 208 NEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKP 287 (563)
Q Consensus 208 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 287 (563)
+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|++. +.+++..
T Consensus 70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~--g~~~~~~ 135 (231)
T 3aji_A 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN------------RHEIAVMLLEG--GANPDAK 135 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTCC
T ss_pred CCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCCc
Confidence 445555555555555555555555555555555555555555555555 55555555554 4555555
Q ss_pred CCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHH
Q 039863 288 DQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAA 367 (563)
Q Consensus 288 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 367 (563)
+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+
T Consensus 136 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 136 DHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAK 213 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 555555555555555555555555555554 334555555555555555555555555555443 445555666666665
Q ss_pred HcCChHHHHHhhhC
Q 039863 368 HSGSRRTVEFLLEN 381 (563)
Q Consensus 368 ~~~~~~iv~~Ll~~ 381 (563)
..++.+++++|.+.
T Consensus 214 ~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 214 GGLGLILKRLAEGE 227 (231)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccc
Confidence 55555555555554
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-35 Score=277.29 Aligned_cols=213 Identities=23% Similarity=0.246 Sum_probs=195.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHHh
Q 039863 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTC--ESPVD-HGPMGRTALHAAAF 253 (563)
Q Consensus 177 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~Lh~A~~ 253 (563)
|+||||.|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+ .+++. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999999887778999999999999999999999999999 44444 78899999999999
Q ss_pred hccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHH
Q 039863 254 REYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAA 333 (563)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 333 (563)
.+ +.+++++|++.+.+.+++..+..|.||||+|+..|+.+++++|++.|.++ ...+..|.||||+|+
T Consensus 82 ~~------------~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~ 148 (228)
T 2dzn_A 82 VG------------NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAA 148 (228)
T ss_dssp HC------------CHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred cC------------CHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence 99 99999999997334888999999999999999999999999999999887 566889999999999
Q ss_pred hcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhh-hCCCcccCCCCCCCCCChHHHHHHHc
Q 039863 334 GKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLL-ENPSLGNLMNEKNYDGNTPLLEHAVS 405 (563)
Q Consensus 334 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~in~~d~~G~TpLh~A~~~ 405 (563)
..|+.+++++|++.++..++.+|..|+||||+|+..++.+++++|+ +. |++++.+|..|+||||+|+..
T Consensus 149 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSST
T ss_pred HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHHH
Confidence 9999999999999996777889999999999999999999999999 77 889999999999999999654
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=288.66 Aligned_cols=216 Identities=22% Similarity=0.245 Sum_probs=172.8
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-------ccccCcCCCcHHHHHHHcCCH-HHHHHHHhcCCCCCCCCCCC
Q 039863 173 TNEAKDTALHEAVRYNQVDVVKMLTKEDPNL-------SYDANEAGETPLYLAAERGYK-DVMEDILSTCESPVDHGPMG 244 (563)
Q Consensus 173 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~-------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~g 244 (563)
+|..+.++|+.|+..|+.++|++|++.+... ....+..+.|||+.|+..+.. .++++|++.|++++..+.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 5677789999999999999999999987653 223566789999999988775 48899999999999999999
Q ss_pred CcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCC
Q 039863 245 RTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNE 324 (563)
Q Consensus 245 ~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 324 (563)
+||||+|+..| +.+++++|++. +.+++..+..|.||+|.|+..++.+++++|++.|+++ +.+|..
T Consensus 87 ~TpLh~A~~~g------------~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~ 151 (269)
T 4b93_B 87 SSPLHVAALHG------------RADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLS 151 (269)
T ss_dssp CCHHHHHHHTT------------CTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred CCHHHHHHHcC------------cHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCC
Confidence 99999999999 99999999997 8899999999999999999999999999999999988 567999
Q ss_pred CChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHH
Q 039863 325 GKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAV 404 (563)
Q Consensus 325 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~ 404 (563)
|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|+.+|+.+++++|++. |++++.+|..|+||||+|++
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLH---GASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCSGGGSCT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHh
Confidence 999999999999999999999998775 77899999999999999999999999998 89999999999999999987
Q ss_pred cCC
Q 039863 405 SGS 407 (563)
Q Consensus 405 ~~~ 407 (563)
+++
T Consensus 228 ~~~ 230 (269)
T 4b93_B 228 NSK 230 (269)
T ss_dssp TCH
T ss_pred CCc
Confidence 764
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-36 Score=295.49 Aligned_cols=259 Identities=23% Similarity=0.249 Sum_probs=206.4
Q ss_pred hhhHHHHHHHhCchhh--------hcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCC
Q 039863 106 GENFVRVILEMCPILL--------LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAK 177 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l--------~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 177 (563)
+.+.++.++....... ...+..|.||||.||..|+.++|++|++.|++++ ..+..|
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g 73 (299)
T 1s70_B 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN----------------YANVDG 73 (299)
T ss_dssp HHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT----------------CBCTTC
T ss_pred HHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc----------------ccCCCC
Confidence 6666666665543311 1234467899999999999999999999998854 478889
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccc
Q 039863 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYT 257 (563)
Q Consensus 178 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~ 257 (563)
.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-- 150 (299)
T 1s70_B 74 LTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-- 150 (299)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH--
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc--
Confidence 999999999999999999999999987 47889999999999999999999999999999999999999999999998
Q ss_pred cchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCC
Q 039863 258 LQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGR 337 (563)
Q Consensus 258 ~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 337 (563)
+.++++.++.. .+.+++..+..+.+++ ...+..++..+.......+..|.||||+|+..|+
T Consensus 151 ----------~~~~~~~ll~~-~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~ 211 (299)
T 1s70_B 151 ----------MEELLQNEVNR-QGVDIEAARKEEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211 (299)
T ss_dssp ----------HHHHHHHHHHH-HTCCHHHHHHHHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred ----------hHHHHHHHHhh-cCCCchhhhhhhhhHH--------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc
Confidence 89999998876 3444333222222222 2334455555555555667788888888888888
Q ss_pred HHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC
Q 039863 338 AYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG 406 (563)
Q Consensus 338 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~ 406 (563)
.+++++|++.+.+. +.+|..|+||||+|+.+|+.+++++|++. |++++.+|..|+||||+|+...
T Consensus 212 ~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 212 TEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTTTSCCSGG
T ss_pred HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHHH
Confidence 88888888877664 66788888888888888888888888888 7888888888888888886543
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=289.64 Aligned_cols=230 Identities=20% Similarity=0.251 Sum_probs=176.5
Q ss_pred cccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCH-HHHHHHHhcCC
Q 039863 123 KANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQV-DVVKMLTKEDP 201 (563)
Q Consensus 123 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~ 201 (563)
++|..+.+||+.||..|+.++|++|++.++..... ....+...+..|.|||+.|+..++. .++++|++.|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga 77 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence 45677789999999999999999999988764221 1123456788899999999988776 48899999999
Q ss_pred CCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCC
Q 039863 202 NLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG 281 (563)
Q Consensus 202 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~ 281 (563)
+++ ..|..|.||||+|+..|+.+++++|++.+++++..+..|.||+|.|+..+ +.+++++|++. +
T Consensus 78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~------------~~~~~~~Ll~~--g 142 (269)
T 4b93_B 78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG------------HFQVVKCLLDS--N 142 (269)
T ss_dssp CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT------------CHHHHHHHHHT--T
T ss_pred CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC------------hHHHHHHHHHC--C
Confidence 987 47889999999999999999999999999999999999999999999999 99999999997 8
Q ss_pred CCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCCh
Q 039863 282 TQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWN 361 (563)
Q Consensus 282 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 361 (563)
.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++|.+. +.+|..|+|
T Consensus 143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~T 220 (269)
T 4b93_B 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRT 220 (269)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCC
Confidence 999999999999999999999999999999999988 567999999999999999999999999998775 789999999
Q ss_pred HHHHHHHcCChHHHHHhh
Q 039863 362 VFHFAAHSGSRRTVEFLL 379 (563)
Q Consensus 362 ~Lh~A~~~~~~~iv~~Ll 379 (563)
|||+|+++++ ++++|.
T Consensus 221 pL~~A~~~~~--i~~lL~ 236 (269)
T 4b93_B 221 AVDCAEQNSK--IMELLQ 236 (269)
T ss_dssp SGGGSCTTCH--HHHHTT
T ss_pred HHHHHHhCCc--HHHHHH
Confidence 9999987764 555443
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.9e-35 Score=272.76 Aligned_cols=221 Identities=23% Similarity=0.289 Sum_probs=198.8
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCCcc
Q 039863 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED--PNLSY 205 (563)
Q Consensus 128 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~--~~~~~ 205 (563)
|+||||.||..|+.++|++|++.+.+. ....+..|.||||+|+..|+.+++++|++.+ +++..
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence 789999999999999999999998763 3357889999999999999999999999999 55554
Q ss_pred ccCcCCCcHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCC
Q 039863 206 DANEAGETPLYLAAERGYKDVMEDILSTC--ESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQ 283 (563)
Q Consensus 206 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 283 (563)
..+..|.||||+|+..|+.+++++|++.+ ++++..+..|.||||.|+..+ +.+++++|++. +.+
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~--g~~ 132 (228)
T 2dzn_A 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK------------WFEVSQFLIEN--GAS 132 (228)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTT------------CHHHHHHHHHT--TCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcC------------CHhHHHHHHHc--CCC
Confidence 47789999999999999999999999998 888889999999999999999 99999999997 899
Q ss_pred CccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHH-HhCCCCccccccCCChH
Q 039863 284 TTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELI-RSCPSSCELVDDRGWNV 362 (563)
Q Consensus 284 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~ 362 (563)
++..+..|.||||+|+..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|+ +.+.+ ++.+|..|+||
T Consensus 133 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~ 211 (228)
T 2dzn_A 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKA 211 (228)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBG
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcH
Confidence 99999999999999999999999999999993333677999999999999999999999999 66665 47899999999
Q ss_pred HHHHHHcCChHHHHHhhhC
Q 039863 363 FHFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 363 Lh~A~~~~~~~iv~~Ll~~ 381 (563)
||+|+.. +++++|+++
T Consensus 212 l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 212 EDVALNE---QVKKFFLNN 227 (228)
T ss_dssp GGGCSST---THHHHHHTT
T ss_pred HHHHHHH---HHHHHHHhc
Confidence 9999654 677777764
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=273.08 Aligned_cols=230 Identities=19% Similarity=0.211 Sum_probs=209.7
Q ss_pred hcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 039863 122 LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDP 201 (563)
Q Consensus 122 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 201 (563)
...+..|.||||.|+..|+.++|++|++.|.+.. ..+..|.||||+|+..|+.+++++|++.++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR----------------QPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcC----------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 4567889999999999999999999999998754 478889999999999999999999999999
Q ss_pred CCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCC
Q 039863 202 NLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG 281 (563)
Q Consensus 202 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~ 281 (563)
+.....+..|.|||++|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|++. +
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~------------~~~~~~~Ll~~--~ 132 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG------------HTSIVAYLIAK--G 132 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--T
T ss_pred cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC------------HHHHHHHHHhc--C
Confidence 988777777999999999999999999999999999999999999999999999 99999999997 8
Q ss_pred CCCccCCCCCCCHHHHHHHcCC-hHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCC
Q 039863 282 TQTTKPDQQGWLPLHLAAHLGN-YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGW 360 (563)
Q Consensus 282 ~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 360 (563)
.+++..+..|.||||+|+..++ .+++++|++.+.++.......|.||||+|+..|+.+++++|++++.+. +..|..|+
T Consensus 133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 211 (240)
T 3eu9_A 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGE 211 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSC
T ss_pred CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCC
Confidence 8899999999999999997766 889999999999886554458999999999999999999999998665 77899999
Q ss_pred hHHHHHHHcCChHHHHHhhhCC
Q 039863 361 NVFHFAAHSGSRRTVEFLLENP 382 (563)
Q Consensus 361 t~Lh~A~~~~~~~iv~~Ll~~~ 382 (563)
||||+|+..++.+++++|++.+
T Consensus 212 t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 212 SALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp BHHHHHHHTTCHHHHHHHHHHC
T ss_pred CHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999999999999983
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=289.10 Aligned_cols=270 Identities=18% Similarity=0.159 Sum_probs=225.8
Q ss_pred HHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCc
Q 039863 134 IAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213 (563)
Q Consensus 134 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 213 (563)
.++..++.+.++.++............. .....+..|.||||.|+..|+.++|++|++.+++++ ..+..|.|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t 75 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKR-------KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLT 75 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCC-------SCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCB
T ss_pred hHHHHHHHHHHHHHHccccccccccccC-------cccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence 4777888888888888766533211110 011234567899999999999999999999999987 47889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCC
Q 039863 214 PLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293 (563)
Q Consensus 214 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~t 293 (563)
|||+|+..|+.+++++|++.|++++..+..|.||||+|+..+ +.+++++|++. +.+++..+..|.|
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g------------~~~~v~~Ll~~--g~~~~~~~~~g~t 141 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG------------YLDIAEYLISQ--GAHVGAVNSEGDT 141 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT------------CHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC------------CHHHHHHHHhC--CCCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999 99999999997 8899999999999
Q ss_pred HHHHHHHcCChHHHHHHHhc-CCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCCh
Q 039863 294 PLHLAAHLGNYYVVKELLKA-DISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSR 372 (563)
Q Consensus 294 pLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 372 (563)
|||+|+..++.++++.++.. +.+. ...+..+.+++ ...+..++..+.......+..|.||||+|+.+|+.
T Consensus 142 ~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~ 212 (299)
T 1s70_B 142 PLDIAEEEAMEELLQNEVNRQGVDI-EAARKEEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT 212 (299)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTCCH-HHHHHHHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred HHHHHHhcchHHHHHHHHhhcCCCc-hhhhhhhhhHH--------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH
Confidence 99999999999999988874 3322 11111222222 23456667777766667788999999999999999
Q ss_pred HHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCc-hhhhccCcccCccccccCCCCHHHHHHhc
Q 039863 373 RTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDRLAFNHQNNSAEDIIRSK 437 (563)
Q Consensus 373 ~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~-~~~~l~~~g~d~~~~n~~g~t~l~~a~~~ 437 (563)
+++++|++. |+++|.+|..|+||||+|+..++. ++++|+++|+|++.+|..|+||+++|...
T Consensus 213 ~~v~~Ll~~---g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 213 EVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHHHHc---CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 999999998 889999999999999999999954 66999999999999999999999999653
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.7e-34 Score=266.78 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=179.3
Q ss_pred hhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHH
Q 039863 106 GENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV 185 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~ 185 (563)
+.+++++|++.+++.....+..|.||||+||..|+.++|++|++.|+++. ..+..|.||||+|+
T Consensus 3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~ 66 (223)
T 2f8y_A 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN----------------IQDNMGRTPLHAAV 66 (223)
T ss_dssp --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHH
T ss_pred cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC----------------CcCCCCCCHHHHHH
Confidence 77888889988888666678899999999999999999999999988744 37788999999999
Q ss_pred HcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhh
Q 039863 186 RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFF 265 (563)
Q Consensus 186 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~ 265 (563)
..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+
T Consensus 67 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---------- 136 (223)
T 2f8y_A 67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN---------- 136 (223)
T ss_dssp HTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT----------
T ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC----------
Confidence 9999999999999887444457888899999999999999999999988888888888888888888888
Q ss_pred cccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHH
Q 039863 266 RKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELI 345 (563)
Q Consensus 266 ~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 345 (563)
+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|+.+++++|+
T Consensus 137 --~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~ 211 (223)
T 2f8y_A 137 --NVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLD 211 (223)
T ss_dssp --CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred --CHHHHHHHHHc--CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHH
Confidence 88888888886 7788888888888888888888888888888888776 455777888888888888888888888
Q ss_pred HhCCCC
Q 039863 346 RSCPSS 351 (563)
Q Consensus 346 ~~~~~~ 351 (563)
+++...
T Consensus 212 ~~g~~~ 217 (223)
T 2f8y_A 212 EYNLVR 217 (223)
T ss_dssp HTTCSS
T ss_pred HcCCCc
Confidence 776643
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=267.67 Aligned_cols=233 Identities=21% Similarity=0.195 Sum_probs=210.4
Q ss_pred cccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHH
Q 039863 54 QILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETLLH 133 (563)
Q Consensus 54 ~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh 133 (563)
+..+..|.|+||.|+. .| +.+++++|++.+.+ ++..+..|.||||
T Consensus 3 ~~~d~~~~~~l~~A~~--------------------------~g--------~~~~~~~Ll~~g~~-~~~~~~~g~t~L~ 47 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQ--------------------------YG--------IYERCRELVEAGYD-VRQPDKENVTLLH 47 (240)
T ss_dssp CCCSCGGGCCHHHHHH--------------------------TT--------CHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred cccccccchHHHHHHH--------------------------cC--------ChHHHHHHHHcCCC-cCCCCCCCCCHHH
Confidence 3467788999999999 99 99999999999877 6788899999999
Q ss_pred HHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCc
Q 039863 134 IAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGET 213 (563)
Q Consensus 134 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 213 (563)
+|+..|+.++|++|++.+.+... ..+..|.||||+|+..|+.+++++|++.+.++. ..+..|.|
T Consensus 48 ~A~~~~~~~~v~~Ll~~~~~~~~---------------~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t 111 (240)
T 3eu9_A 48 WAAINNRIDLVKYYISKGAIVDQ---------------LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCS 111 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC---------------CBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred HHHHhCCHHHHHHHHHcCCcchh---------------hcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence 99999999999999999987543 355669999999999999999999999998887 47888999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCC-CCC
Q 039863 214 PLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQ-QGW 292 (563)
Q Consensus 214 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~-~g~ 292 (563)
||++|+..|+.+++++|++.+++++..+..|.||||.|+..+. ..+++++|++. +.+++..+. .|.
T Consensus 112 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-----------~~~~~~~L~~~--~~~~~~~~~~~g~ 178 (240)
T 3eu9_A 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-----------SVDPTRLLLTF--NVSVNLGDKYHKN 178 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-----------SSTTHHHHHHT--TCCTTCCCTTTCC
T ss_pred HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-----------hHHHHHHHHhc--CCCcchhhccCCC
Confidence 9999999999999999999999999999999999999997761 37889999986 888888887 899
Q ss_pred CHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCC
Q 039863 293 LPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSS 351 (563)
Q Consensus 293 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 351 (563)
||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|+.+++++|++.+...
T Consensus 179 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 179 TALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 9999999999999999999999888 567899999999999999999999999987653
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=7.4e-36 Score=293.63 Aligned_cols=267 Identities=15% Similarity=0.088 Sum_probs=203.8
Q ss_pred hhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHH---hccCCCCCCcHHH
Q 039863 106 GENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLM---LGTTNEAKDTALH 182 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~---l~~~~~~g~t~L~ 182 (563)
..+++++|++++.+ ++..+..|.|+++ |+.++|+.|++.|.++....... ...... -........+.+|
T Consensus 31 ~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~ 102 (327)
T 1sw6_A 31 THDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPT--SLNNDSSNRNSEGGSSNQQQQH 102 (327)
T ss_dssp CTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------
T ss_pred cCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchH--hhhcccccccccccCCccchhH
Confidence 44568999999887 6788899999988 99999999999998754311000 000000 0001112234468
Q ss_pred HHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhh
Q 039863 183 EAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYY 262 (563)
Q Consensus 183 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~ 262 (563)
.|+..+..+++++|++.+.+++...+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..+
T Consensus 103 ~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g------- 175 (327)
T 1sw6_A 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV------- 175 (327)
T ss_dssp -CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSS-------
T ss_pred HHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhc-------
Confidence 8998889999999999999998557999999999999999999999999999999999999999999999988
Q ss_pred hhhccc---HHHHHHHHhccCCCCCccCCCCCCCHHHHHHH----cCChHHHHHHHhc--------------------CC
Q 039863 263 YFFRKD---REIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH----LGNYYVVKELLKA--------------------DI 315 (563)
Q Consensus 263 ~~~~~~---~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------~~ 315 (563)
+ .++++.|++. ...+++..|..|+||||+|+. .|+.+++++|++. +.
T Consensus 176 -----~~~~~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~ 249 (327)
T 1sw6_A 176 -----NNYDSGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249 (327)
T ss_dssp -----HHHHTTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------
T ss_pred -----ccccHHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccC
Confidence 5 5677777776 336788999999999999999 8999999999986 56
Q ss_pred CCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCC
Q 039863 316 SAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDG 395 (563)
Q Consensus 316 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G 395 (563)
++ ...+..|.||||.|+. +++|++.. ++.+|..|+||||+|+.+|+.+++++|++. |++++.+|..|
T Consensus 250 ~~-~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G 316 (327)
T 1sw6_A 250 KP-NDKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSG 316 (327)
T ss_dssp -----------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTS
T ss_pred Cc-ccccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCC
Confidence 65 5568899999999985 88888883 577899999999999999999999999999 89999999999
Q ss_pred ChHHHHHHHcC
Q 039863 396 NTPLLEHAVSG 406 (563)
Q Consensus 396 ~TpLh~A~~~~ 406 (563)
+||||+|++.|
T Consensus 317 ~TpL~~A~~~g 327 (327)
T 1sw6_A 317 LRPVDFGAGLE 327 (327)
T ss_dssp CCGGGGTCC--
T ss_pred CCHHHHHHhcC
Confidence 99999998654
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.3e-34 Score=278.99 Aligned_cols=225 Identities=16% Similarity=0.074 Sum_probs=202.1
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 039863 172 TTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAA 251 (563)
Q Consensus 172 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A 251 (563)
.+|..|.||||+|+..|+.+++++|++.++++... +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence 58899999999999999999999999999887643 589999999999999999999999999999999999999999
Q ss_pred HhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCC-CCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHH
Q 039863 252 AFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQG-WLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLH 330 (563)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 330 (563)
+..+ +.+++++|++. +.+++..+..| .||||+|+..|+.+++++|++.+++... ...|.||||
T Consensus 103 ~~~g------------~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~ 166 (285)
T 3kea_A 103 VDSG------------NMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIH 166 (285)
T ss_dssp HHTT------------CHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHH
T ss_pred HHcC------------CHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHH
Confidence 9999 99999999997 89999999999 7999999999999999999999887621 128999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccccccCCChH-HHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC-Cc
Q 039863 331 LAAGKGRAYTMQELIRSCPSSCELVDDRGWNV-FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG-SF 408 (563)
Q Consensus 331 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~-~~ 408 (563)
+|+..|+.+++++|++++.+. +.+|..|+|| ||+|+..++.+++++|+++ |++++.+|. .|+..+ ..
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~-------~a~~~~~~~ 235 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSANL-------ENVLLDDAE 235 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTTG-------GGGTTTCHH
T ss_pred HHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCCh-------hhhhcCCHH
Confidence 999999999999999997765 7789999997 9999999999999999999 889999884 445556 44
Q ss_pred hhhhccCcccCccccccC
Q 039863 409 IKSFVCHPKVDRLAFNHQ 426 (563)
Q Consensus 409 ~~~~l~~~g~d~~~~n~~ 426 (563)
++++|+++|+++...+..
T Consensus 236 iv~~Ll~~g~~~~~~~~~ 253 (285)
T 3kea_A 236 IAKMIIEKHVEYKSDSYT 253 (285)
T ss_dssp HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHcCCCCCCcccc
Confidence 679999999988766544
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.4e-34 Score=266.13 Aligned_cols=217 Identities=23% Similarity=0.259 Sum_probs=193.7
Q ss_pred cCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhc
Q 039863 187 YNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFR 266 (563)
Q Consensus 187 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~ 266 (563)
.|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~----------- 69 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD----------- 69 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-----------
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-----------
Confidence 367889999999999988777889999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 039863 267 KDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIR 346 (563)
Q Consensus 267 ~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 346 (563)
+.+++++|++. ...+++..+..|.||||+|+..|+.+++++|++.++++ ...+..|.||||+|+..|+.+++++|++
T Consensus 70 -~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 70 -AQGVFQILIRN-RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp -CHHHHHHHHHB-TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHc-CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 99999999997 45588888999999999999999999999999998887 5568899999999999999999999999
Q ss_pred hCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCC-chhhhccCcccCcc
Q 039863 347 SCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGS-FIKSFVCHPKVDRL 421 (563)
Q Consensus 347 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~-~~~~~l~~~g~d~~ 421 (563)
++.+. +..|..|+||||+|+..++.+++++|++. |++++.+|..|.||||+|+..++ .++++|++.|+...
T Consensus 147 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 147 NGANK-DMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp TTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred cCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 97765 77899999999999999999999999999 88999999999999999999985 46699998887653
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-34 Score=277.98 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=210.4
Q ss_pred hhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHH
Q 039863 106 GENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV 185 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~ 185 (563)
..++.++|.+.+ ++.+|..|.||||+||..|+.++|++|++.|++++. . +|.||||+|+
T Consensus 12 ~~~v~~lL~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~--~g~t~L~~A~ 70 (285)
T 3kea_A 12 SKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL----------------L--ENEFPLHQAA 70 (285)
T ss_dssp HHHHHHHHHSTT---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC----------------C--TTCCHHHHHT
T ss_pred HHHHHHHHHhCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----------------C--CCCCHHHHHH
Confidence 666777776653 678899999999999999999999999999987543 3 4899999999
Q ss_pred HcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHhhccccchhhhh
Q 039863 186 RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMG-RTALHAAAFREYTLQTYYYF 264 (563)
Q Consensus 186 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~~~~~~ 264 (563)
..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||.|+..+
T Consensus 71 ~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~--------- 140 (285)
T 3kea_A 71 TLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN--------- 140 (285)
T ss_dssp TSSSCHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTT---------
T ss_pred HcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC---------
Confidence 9999999999999999987 478899999999999999999999999999999999999 89999999999
Q ss_pred hcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChH-HHHHHhcCCHHHHHH
Q 039863 265 FRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIP-LHLAAGKGRAYTMQE 343 (563)
Q Consensus 265 ~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~ 343 (563)
+.+++++|++. +...... ..|.||||+|+..|+.+++++|++.|+++ +..+..|.|| ||+|+..|+.+++++
T Consensus 141 ---~~~~v~~Ll~~--g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~ 213 (285)
T 3kea_A 141 ---DVSIVSYFLSE--IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQA 213 (285)
T ss_dssp ---CHHHHHHHHTT--SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred ---CHHHHHHHHhC--CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHH
Confidence 99999999997 4444222 28899999999999999999999999888 5678899998 999999999999999
Q ss_pred HHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCC
Q 039863 344 LIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDG 395 (563)
Q Consensus 344 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G 395 (563)
|++++.+. +..| +.|+..++.+++++|+++ |++++.....+
T Consensus 214 Ll~~gad~-~~~~-------~~a~~~~~~~iv~~Ll~~---g~~~~~~~~~~ 254 (285)
T 3kea_A 214 LFKYDINI-YSAN-------LENVLLDDAEIAKMIIEK---HVEYKSDSYTK 254 (285)
T ss_dssp HTTSCBCS-TTTT-------GGGGTTTCHHHHHHHHHH---HHHHTTCTTTT
T ss_pred HHHcCCCC-CCCC-------hhhhhcCCHHHHHHHHHc---CCCCCCccccc
Confidence 99998775 4444 366889999999999998 77766555433
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-35 Score=289.44 Aligned_cols=262 Identities=14% Similarity=0.039 Sum_probs=206.3
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 039863 126 AKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSY 205 (563)
Q Consensus 126 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 205 (563)
....+|+| ....++|++|++.|++. +..+..|.|+++ |+.++|++|+++|.+...
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~i----------------~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~ 75 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLKI----------------MKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI 75 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCCC----------------EECBCCCCCCCH-----HHHHHHHHHHHHHHC---
T ss_pred cccccchh----hhcCchHHHHhhCCccc----------------ccCCCCCCcccC-----chhHHHHHHHHhccCCcc
Confidence 34455555 46678899999999984 457889999988 999999999998755321
Q ss_pred c----------------cCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHhhccccchhhhhhccc
Q 039863 206 D----------------ANEAGETPLYLAAERGYKDVMEDILSTCESPVD-HGPMGRTALHAAAFREYTLQTYYYFFRKD 268 (563)
Q Consensus 206 ~----------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~ 268 (563)
. ......+.+|+|+..+..+++++|++.+++++. .+..|.||||+|+..+ +
T Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g------------~ 143 (327)
T 1sw6_A 76 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA------------N 143 (327)
T ss_dssp ----------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTT------------C
T ss_pred ccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC------------C
Confidence 0 111122345778888888999999999999999 8999999999999999 9
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCC---hHHHHHHHhcCCCCCccCCCCCChHHHHHHh----cCCHHHH
Q 039863 269 REIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGN---YYVVKELLKADISAAYKPDNEGKIPLHLAAG----KGRAYTM 341 (563)
Q Consensus 269 ~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v 341 (563)
.+++++|++. +.+++..|..|.||||+|+..|+ .++++.|++.+.......+..|+||||+|+. .|+.+++
T Consensus 144 ~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v 221 (327)
T 1sw6_A 144 LELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 221 (327)
T ss_dssp HHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHH
Confidence 9999999997 89999999999999999999998 7788888887644346789999999999999 8999999
Q ss_pred HHHHHhC-------------------CCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHH
Q 039863 342 QELIRSC-------------------PSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEH 402 (563)
Q Consensus 342 ~~Ll~~~-------------------~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A 402 (563)
++|++.+ ...++..+..|+||||.|+. +++|++. ++|.+|..|+||||+|
T Consensus 222 ~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A 290 (327)
T 1sw6_A 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIA 290 (327)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHH
Confidence 9999873 34457789999999999985 8999986 6999999999999999
Q ss_pred HHcCC-chhhhccCcccCccccccCCCCHHHHHHhc
Q 039863 403 AVSGS-FIKSFVCHPKVDRLAFNHQNNSAEDIIRSK 437 (563)
Q Consensus 403 ~~~~~-~~~~~l~~~g~d~~~~n~~g~t~l~~a~~~ 437 (563)
+..++ .++++|+++|+|++.+|..|+||+|+|...
T Consensus 291 ~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 99995 466999999999999999999999998753
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=8.1e-32 Score=251.71 Aligned_cols=204 Identities=19% Similarity=0.218 Sum_probs=158.5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHh-cCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc-
Q 039863 127 KGETLLHIAARHGHYDIVKVLIAE-CKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLS- 204 (563)
Q Consensus 127 ~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~- 204 (563)
.|+||||+||..|+.++|++|++. |.+++ .+|..|.||||+|+..|+.+++++|++.++++.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 65 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH----------------QRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc----------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence 589999999999999999999998 77643 478999999999999999999999999988763
Q ss_pred ---cccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCC
Q 039863 205 ---YDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKG 281 (563)
Q Consensus 205 ---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~ 281 (563)
...+..|.||||+|+..|+.+++++|++.|++++..+... .+ .
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--~~--------------------------------~ 111 (232)
T 2rfa_A 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS--VF--------------------------------H 111 (232)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG--GG--------------------------------S
T ss_pred ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc--ce--------------------------------e
Confidence 2456789999999999999999999999999887755321 00 1
Q ss_pred CCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHH----HHHHHhCCCCc-----
Q 039863 282 TQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTM----QELIRSCPSSC----- 352 (563)
Q Consensus 282 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v----~~Ll~~~~~~~----- 352 (563)
...+..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++ ++|++.+++..
T Consensus 112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~ 190 (232)
T 2rfa_A 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190 (232)
T ss_dssp CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGG
T ss_pred ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhh
Confidence 123344566777777777777777777777777666 44567777777777777777766 77777766543
Q ss_pred cccccCCChHHHHHHHcCChHHHHHhhhC
Q 039863 353 ELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 353 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 381 (563)
+..|..|+||||+|+..|+.+++++|+++
T Consensus 191 ~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 45677777777777777777777777776
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=3.1e-33 Score=262.00 Aligned_cols=211 Identities=21% Similarity=0.220 Sum_probs=115.3
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----CccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 039863 172 TTNEAKDTALHEAVRYNQVDVVKMLTKEDPN----LSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTA 247 (563)
Q Consensus 172 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 247 (563)
..|..|.||||+|+..|+.+++++|++.++. +. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 4566777777777777777777777766542 33 355667777777777777777777777776666666666666
Q ss_pred HHHHHhhccccchhhhhhcccHHHHHHHHhccC----CCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCC
Q 039863 248 LHAAAFREYTLQTYYYFFRKDREIIKVLLRSSK----GTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDN 323 (563)
Q Consensus 248 Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~----~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 323 (563)
||+|+..+ +.+++++|++.+. ....+..+..
T Consensus 82 L~~A~~~~------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~--------------------------------- 116 (236)
T 1ikn_D 82 LHLACEQG------------CLASVGVLTQSCTTPHLHSILKATNYN--------------------------------- 116 (236)
T ss_dssp HHHHHHHT------------CHHHHHHHHHSTTTTSSSCGGGCCCTT---------------------------------
T ss_pred HHHHHHcC------------CHHHHHHHHhcccchhHHHHhhccCCC---------------------------------
Confidence 66666666 6666666666511 0112334444
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHhCCCCcccccc-CCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHH
Q 039863 324 EGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDD-RGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEH 402 (563)
Q Consensus 324 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A 402 (563)
|.||||+|+..|+.+++++|++.+.+. +..+. .|+||||+|+..++.+++++|++. |++++.+|..|+||||+|
T Consensus 117 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A 191 (236)
T 1ikn_D 117 -GHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLT 191 (236)
T ss_dssp -CCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGC
T ss_pred -CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHH
Confidence 445555555555555555555544433 33333 455555555555555555555554 445555555555555555
Q ss_pred HHcCC-chhhhccCcccCcc--ccccCCCCHHHH
Q 039863 403 AVSGS-FIKSFVCHPKVDRL--AFNHQNNSAEDI 433 (563)
Q Consensus 403 ~~~~~-~~~~~l~~~g~d~~--~~n~~g~t~l~~ 433 (563)
+..+. .++++|+++|++.. ..+..|.||.+.
T Consensus 192 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~ 225 (236)
T 1ikn_D 192 WGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225 (236)
T ss_dssp TTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCC
T ss_pred HccCchHHHHHHHHcchhhhhcCCccchHHHHhh
Confidence 55442 23355555555444 455555555443
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=3.3e-31 Score=247.51 Aligned_cols=210 Identities=21% Similarity=0.212 Sum_probs=178.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhc-CCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCC-----CCCCCCCCcHHH
Q 039863 176 AKDTALHEAVRYNQVDVVKMLTKE-DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESP-----VDHGPMGRTALH 249 (563)
Q Consensus 176 ~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~g~t~Lh 249 (563)
.|+||||+|+..|+.+++++|++. +.++. ..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 488999999999999999999998 77766 47889999999999999999999999999876 567789999999
Q ss_pred HHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHH
Q 039863 250 AAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPL 329 (563)
Q Consensus 250 ~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 329 (563)
.|+..+ +.+++++|++. +.+++..+.... ++ . .....+..|.|||
T Consensus 81 ~A~~~~------------~~~~v~~Ll~~--g~~~~~~~~~~~--~~----------------~---~~~~~~~~g~t~L 125 (232)
T 2rfa_A 81 IAVINQ------------NVNLVRALLAR--GASVSARATGSV--FH----------------Y---RPHNLIYYGEHPL 125 (232)
T ss_dssp HHHHTT------------CHHHHHHHHHT--TCCTTCCCCSGG--GS----------------C---CTTCSCCCCSSHH
T ss_pred HHHHcC------------CHHHHHHHHhC--CCCCCcccCCcc--ee----------------e---cccccccCCCCHH
Confidence 999999 99999999997 777776654321 10 0 1133577899999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHH----HHhhhCCCcccCC------CCCCCCCChHH
Q 039863 330 HLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTV----EFLLENPSLGNLM------NEKNYDGNTPL 399 (563)
Q Consensus 330 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv----~~Ll~~~~~~~~i------n~~d~~G~TpL 399 (563)
|+|+..|+.+++++|++++.+. +.+|..|+||||+|+..++.+++ ++|++. |++. +.+|..|+|||
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~~~~~~~g~tpl 201 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSY---DGGDHLKSLELVPNNQGLTPF 201 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT---TCSCSSCCGGGCCCTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc---CCchhhhhhhccCCCCCCCHH
Confidence 9999999999999999998765 77899999999999999999988 999998 6665 68999999999
Q ss_pred HHHHHcCC-chhhhccCcccCcccccc
Q 039863 400 LEHAVSGS-FIKSFVCHPKVDRLAFNH 425 (563)
Q Consensus 400 h~A~~~~~-~~~~~l~~~g~d~~~~n~ 425 (563)
|+|+..++ .++++|+++|.+......
T Consensus 202 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 202 KLAGVEGNIVMFQHLMQKRKHIAAAHH 228 (232)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHcCCHHHHHHHHhcCccchhhhc
Confidence 99999995 466999999987765543
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=1.4e-32 Score=257.54 Aligned_cols=182 Identities=25% Similarity=0.296 Sum_probs=152.6
Q ss_pred HhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCC------CCCCCC
Q 039863 169 MLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES------PVDHGP 242 (563)
Q Consensus 169 ~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~------~~~~~~ 242 (563)
.++..+..|.||||+|+..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|++.+++ .+..+.
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC
Confidence 356788899999999999999999999999999887 4788999999999999999999999999876 355788
Q ss_pred CCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCC-CCCCHHHHHHHcCChHHHHHHHhcCCCCCccC
Q 039863 243 MGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQ-QGWLPLHLAAHLGNYYVVKELLKADISAAYKP 321 (563)
Q Consensus 243 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 321 (563)
.|.||||.|+..+ +.+++++|++. +.+++..+. .|.||||+|+..|+.+++++|++.|+++ ...
T Consensus 116 ~g~t~L~~A~~~~------------~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~ 180 (236)
T 1ikn_D 116 NGHTCLHLASIHG------------YLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRV 180 (236)
T ss_dssp TCCCHHHHHHHTT------------CHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCC
T ss_pred CCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccc
Confidence 8999999999999 99999999997 888888887 8888888888888888888888888877 455
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHhCCCCc-cccccCCChHHHHH
Q 039863 322 DNEGKIPLHLAAGKGRAYTMQELIRSCPSSC-ELVDDRGWNVFHFA 366 (563)
Q Consensus 322 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~A 366 (563)
+..|.||||+|+..|+.+++++|++++.+.. ...+..|.|+++.+
T Consensus 181 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp CTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred cCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 7778888888888888888877777776543 24455566555433
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=8e-31 Score=239.14 Aligned_cols=193 Identities=21% Similarity=0.259 Sum_probs=121.9
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 039863 126 AKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSY 205 (563)
Q Consensus 126 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 205 (563)
..+.||||.||..|+.++|+.|+..+... ++..+..|.||||+|+..|+.+++++|++.++++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 66 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQ---------------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN- 66 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 34556666666666666666666655411 22355566666666666666666666666666655
Q ss_pred ccCcCCCcHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCC
Q 039863 206 DANEAGETPLYLAAERGYKDVMEDIL-STCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQT 284 (563)
Q Consensus 206 ~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~ 284 (563)
..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||.|+..+ +.+++++|++. .+.++
T Consensus 67 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~-g~~~~ 133 (201)
T 3hra_A 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG------------HIDNVKLLLED-GREDI 133 (201)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT------------CHHHHHHHHHH-CCCCT
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC------------CHHHHHHHHHc-CCCCc
Confidence 35556666666666666666666666 334456666666666666666666 66666666665 22666
Q ss_pred ccCCCCCCCHHHHHHHcCC-----hHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhC
Q 039863 285 TKPDQQGWLPLHLAAHLGN-----YYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSC 348 (563)
Q Consensus 285 ~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 348 (563)
+..+..|.||||+|+..++ .+++++|++.|+++ ...|..|.||||+|+..|+.+++++|+++|
T Consensus 134 ~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 6666666666666666665 66666666666665 445666667777777667777766666543
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.5e-30 Score=234.83 Aligned_cols=192 Identities=18% Similarity=0.217 Sum_probs=154.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCC-CCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 039863 175 EAKDTALHEAVRYNQVDVVKMLTKEDP-NLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAF 253 (563)
Q Consensus 175 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 253 (563)
..+.||||.|+..|+.++++.|+..++ ++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456788888888888888888888876 444 567788888888888888888888888888888888888888888888
Q ss_pred hccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHH
Q 039863 254 REYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAA 333 (563)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 333 (563)
.+ +.+++++|++. .+.+++..+..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+
T Consensus 82 ~~------------~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 148 (201)
T 3hra_A 82 QG------------RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV 148 (201)
T ss_dssp TT------------CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH
T ss_pred cC------------CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH
Confidence 88 88888888865 567778888888888888888888888888888773333566778888888888
Q ss_pred hcCC-----HHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhC
Q 039863 334 GKGR-----AYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 334 ~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 381 (563)
..+. .+++++|++++.+. +.+|..|+||||+|+.+++.+++++|+++
T Consensus 149 ~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 149 GLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 7777 78888888877665 66778888888888888888888888775
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.1e-31 Score=257.26 Aligned_cols=208 Identities=18% Similarity=0.194 Sum_probs=130.2
Q ss_pred hcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHc---CCHHHHHHHHh
Q 039863 122 LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY---NQVDVVKMLTK 198 (563)
Q Consensus 122 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~ 198 (563)
...+..|.||||.||..|+.++|+.|++.+.+....... .....+..|.||||+|+.. |+.+++++|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~ 78 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD 78 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 457889999999999999999999999865432110000 0113578999999999987 99999999999
Q ss_pred cCCCCc----------cccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------CCCcHHHHHHhh
Q 039863 199 EDPNLS----------YDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGP--------------MGRTALHAAAFR 254 (563)
Q Consensus 199 ~~~~~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~g~t~Lh~A~~~ 254 (563)
.+++.. ...+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus 79 ~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 158 (273)
T 2pnn_A 79 VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158 (273)
T ss_dssp HHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred hhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc
Confidence 875421 12456899999999999999999999999999988776 455555555554
Q ss_pred ccccchhhhhhcccHHHHHHHHhcc-CCCCCccCCCCCCCHHHHHHHcCC---------hHHHHHHHhcCCCCC------
Q 039863 255 EYTLQTYYYFFRKDREIIKVLLRSS-KGTQTTKPDQQGWLPLHLAAHLGN---------YYVVKELLKADISAA------ 318 (563)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~Ll~~~-~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~------ 318 (563)
+ +.+++++|++.. .+.+++..|..|.||||+|+..|+ .+++++|++.|+++.
T Consensus 159 g------------~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~ 226 (273)
T 2pnn_A 159 N------------QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226 (273)
T ss_dssp T------------CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred C------------CHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence 4 445555555411 144444445455555555554444 344444444444332
Q ss_pred ccCCCCCChHHHHHHhcCCHHHHHHHHHhCC
Q 039863 319 YKPDNEGKIPLHLAAGKGRAYTMQELIRSCP 349 (563)
Q Consensus 319 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 349 (563)
...|..|.||||+|+..|+.+++++|++++.
T Consensus 227 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 227 EITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 1234444444444444444444444444444
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=7.7e-31 Score=248.92 Aligned_cols=197 Identities=17% Similarity=0.155 Sum_probs=130.5
Q ss_pred CCcHHHHHHHcCcHH----HHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHc---CCHHHHHHHHhcC
Q 039863 128 GETLLHIAARHGHYD----IVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRY---NQVDVVKMLTKED 200 (563)
Q Consensus 128 g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~ 200 (563)
|+||||.||..|+.+ ++++|++.|.+.+. .....+..|.||||+|+.. |+.+++++|++.+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~------------~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTD------------SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTS------------GGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCccc------------ccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC
Confidence 789999999999997 66777778887432 0012688999999999999 9999999999987
Q ss_pred CCCccc----------cCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-------------CCcHHHHHHhhccc
Q 039863 201 PNLSYD----------ANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM-------------GRTALHAAAFREYT 257 (563)
Q Consensus 201 ~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~ 257 (563)
++.... .|..|.||||+|+..|+.+++++|++.|++++..+.. |.||||.|+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~-- 147 (256)
T 2etb_A 70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK-- 147 (256)
T ss_dssp HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT--
T ss_pred CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC--
Confidence 665421 2467999999999999999999999999999887765 555555555555
Q ss_pred cchhhhhhcccHHHHHHHHhcc-CCCCCccCCCCCCCHHHHHHH--cCChH-------HHHHHHhcCCCCC------ccC
Q 039863 258 LQTYYYFFRKDREIIKVLLRSS-KGTQTTKPDQQGWLPLHLAAH--LGNYY-------VVKELLKADISAA------YKP 321 (563)
Q Consensus 258 ~~~~~~~~~~~~~~~~~Ll~~~-~~~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~~------~~~ 321 (563)
+.+++++|++.. .+.+++..|..|.||||+|+. .++.+ ++++|++.|+++. ..+
T Consensus 148 ----------~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~ 217 (256)
T 2etb_A 148 ----------QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217 (256)
T ss_dssp ----------CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred ----------CHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence 555555555510 145555555555555555554 44444 4455544444332 233
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHhC
Q 039863 322 DNEGKIPLHLAAGKGRAYTMQELIRSC 348 (563)
Q Consensus 322 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 348 (563)
|..|.||||+|+..|+.+++++|++++
T Consensus 218 d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 218 NHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 444444444444444444444444443
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=8.8e-31 Score=251.05 Aligned_cols=227 Identities=20% Similarity=0.211 Sum_probs=173.8
Q ss_pred ccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCch---hhh----ccc
Q 039863 53 HQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPI---LLL----KAN 125 (563)
Q Consensus 53 ~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~---~l~----~~~ 125 (563)
.+..+..|+||||.|+. .| +.++|++|++.+.+ .+. ..+
T Consensus 6 ~~~~d~~g~t~L~~A~~--------------------------~g--------~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 51 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVA--------------------------QS--------NCQELESLLPFLQRSKKRLTDSEFKDP 51 (273)
T ss_dssp -----CCCHHHHHHHHH--------------------------TT--------CSSTTTTHHHHHHHSCCCTTSGGGSCT
T ss_pred CCCCCcccchHHHHHHH--------------------------cC--------CHHHHHHHHHHHhhcccccCCcccccC
Confidence 34478899999999999 99 99999998874321 122 457
Q ss_pred CCCCcHHHHHHHc---CcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhc----cCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 039863 126 AKGETLLHIAARH---GHYDIVKVLIAECKKPHQNNPEEGVAAARLMLG----TTNEAKDTALHEAVRYNQVDVVKMLTK 198 (563)
Q Consensus 126 ~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~----~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 198 (563)
..|.||||+||.. |+.++|++|++.|++... ...+++ ..|..|.||||+|+..|+.++|++|++
T Consensus 52 ~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 122 (273)
T 2pnn_A 52 ETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122 (273)
T ss_dssp TTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 8999999999987 999999999999876432 112233 267789999999999999999999999
Q ss_pred cCCCCccccCc--------------CCCcHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHhhccccchh
Q 039863 199 EDPNLSYDANE--------------AGETPLYLAAERGYKDVMEDILS---TCESPVDHGPMGRTALHAAAFREYTLQTY 261 (563)
Q Consensus 199 ~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~ 261 (563)
.|+++.. .+. .|.||||+|+..|+.+++++|++ .|++++..+..|+||||+|+..+......
T Consensus 123 ~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~ 201 (273)
T 2pnn_A 123 NGADVQA-AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDN 201 (273)
T ss_dssp TTCCTTC-CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHH
T ss_pred CCCCcCc-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhH
Confidence 9999875 443 79999999999999999999999 89999999999999999999987210000
Q ss_pred hhhhcccHHHHHHHHhccCCCCCc-------cCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChH
Q 039863 262 YYFFRKDREIIKVLLRSSKGTQTT-------KPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIP 328 (563)
Q Consensus 262 ~~~~~~~~~~~~~Ll~~~~~~~~~-------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 328 (563)
.. ...+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|++.|+.........+.+|
T Consensus 202 ~~---~~~~~v~~Ll~~--ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 202 TK---FVTSMYNEILIL--GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HH---HHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred HH---HHHHHHHHHHHh--hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 00 017899999997 66665 5899999999999999999999999999984434444455444
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=4.6e-29 Score=219.27 Aligned_cols=157 Identities=33% Similarity=0.415 Sum_probs=127.4
Q ss_pred cHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCc
Q 039863 130 TLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANE 209 (563)
Q Consensus 130 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 209 (563)
++|+.||+.|+.++|++|++.|++++ .+|..|.||||+|+..++.+++++|++.+.++. ..+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn----------------~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN----------------ASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC----------------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence 46888888888888888888888744 477888888888888888888888888888876 4677
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCC
Q 039863 210 AGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQ 289 (563)
Q Consensus 210 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~ 289 (563)
.|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..+ +.+++++|++. +.+++..|.
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g------------~~~~v~~Ll~~--gad~~~~d~ 134 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG------------HKEVVKLLISK--GADVNTSDS 134 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTCCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCCccccCC
Confidence 8888888888888888888888888888888888888888888888 88888888886 778888888
Q ss_pred CCCCHHHHHHHcCChHHHHHHHhcCCCC
Q 039863 290 QGWLPLHLAAHLGNYYVVKELLKADISA 317 (563)
Q Consensus 290 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 317 (563)
.|.||||+|+..|+.+++++|++.|+++
T Consensus 135 ~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 135 DGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 8888888888888888888888888776
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.6e-30 Score=243.00 Aligned_cols=191 Identities=22% Similarity=0.269 Sum_probs=147.4
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHhcCCCCcc---ccCcCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCC------
Q 039863 176 AKDTALHEAVRYNQVD----VVKMLTKEDPNLSY---DANEAGETPLYLAAER---GYKDVMEDILSTCESPVD------ 239 (563)
Q Consensus 176 ~g~t~L~~A~~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~------ 239 (563)
.|.||||.|+..|+.+ ++++|++.+.+++. ..+..|.||||+|+.. |+.+++++|++.+++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4789999999999997 66777778988874 3688999999999999 999999999999876653
Q ss_pred -----CCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCC-------------CCCHHHHHHHc
Q 039863 240 -----HGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQ-------------GWLPLHLAAHL 301 (563)
Q Consensus 240 -----~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~-------------g~tpLh~A~~~ 301 (563)
.+..|.||||.|+..+ +.+++++|++. +.+++..+.. |.||||+|+..
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g------------~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 146 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKR------------SLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred cccccccccCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence 3467999999999999 99999999997 8888888876 67777777777
Q ss_pred CChHHHHHHHh---cCCCCCccCCCCCChHHHHHHh--cCCHH-------HHHHHHHhCCCCc------cccccCCChHH
Q 039863 302 GNYYVVKELLK---ADISAAYKPDNEGKIPLHLAAG--KGRAY-------TMQELIRSCPSSC------ELVDDRGWNVF 363 (563)
Q Consensus 302 g~~~~v~~Ll~---~~~~~~~~~~~~g~tpL~~A~~--~g~~~-------~v~~Ll~~~~~~~------~~~d~~g~t~L 363 (563)
|+.+++++|++ .|+++ +..|..|+||||+|+. .++.+ ++++|++++.+.. +.+|..|+|||
T Consensus 147 ~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 225 (256)
T 2etb_A 147 KQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225 (256)
T ss_dssp TCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH
T ss_pred CCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence 77777777777 66665 4456667777777766 56666 6666666655432 45566666666
Q ss_pred HHHHHcCChHHHHHhhhC
Q 039863 364 HFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 364 h~A~~~~~~~iv~~Ll~~ 381 (563)
|+|+..|+.+++++|+++
T Consensus 226 ~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 226 KLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhC
Confidence 666666666666666665
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=4.7e-29 Score=219.19 Aligned_cols=152 Identities=31% Similarity=0.443 Sum_probs=82.4
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCC
Q 039863 214 PLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWL 293 (563)
Q Consensus 214 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~t 293 (563)
+|+.||+.|+.++|++|++.|++++..+..|+||||.|+..+ +.+++++|++. +.+++..|..|.|
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~------------~~~~~~~ll~~--gad~~~~d~~g~T 72 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG------------HKEVVKLLISK--GADVNAKDSDGRT 72 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC------------CHHHHHHHHhc--ccchhhhccCCCC
Confidence 455555555555555555555555555555555555555555 55555555553 4555555555555
Q ss_pred HHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChH
Q 039863 294 PLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRR 373 (563)
Q Consensus 294 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 373 (563)
|||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+.+++.+
T Consensus 73 pLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~ 150 (169)
T 4gpm_A 73 PLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEE 150 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence 555555555555555555555554 334555555555555555555555555554443 445555555555555555555
Q ss_pred HHHHhhhC
Q 039863 374 TVEFLLEN 381 (563)
Q Consensus 374 iv~~Ll~~ 381 (563)
++++|+++
T Consensus 151 iv~~Ll~~ 158 (169)
T 4gpm_A 151 VVKLLEKQ 158 (169)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHC
Confidence 55555555
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=1.5e-29 Score=240.55 Aligned_cols=202 Identities=21% Similarity=0.206 Sum_probs=146.1
Q ss_pred cCCCCcHHHHHHHcCcHHHHHHHHH----hcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHH---HcCCHHHHHHHH
Q 039863 125 NAKGETLLHIAARHGHYDIVKVLIA----ECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV---RYNQVDVVKMLT 197 (563)
Q Consensus 125 ~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~---~~g~~~iv~~Ll 197 (563)
+..|+|+||.||+.|+.+.|+.|++ .+.+.... ....+..|.||||+|+ ..|+.+++++|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll 69 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------------EFREPSTGKTCLPKALLNLSAGRNDTIPILL 69 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence 4578899999999999996555555 88775431 1124577999999999 779999999999
Q ss_pred hcCCCC----------ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------------CCCCcHHHHHHh
Q 039863 198 KEDPNL----------SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHG--------------PMGRTALHAAAF 253 (563)
Q Consensus 198 ~~~~~~----------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------~~g~t~Lh~A~~ 253 (563)
+.+.+. ....+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 149 (260)
T 3jxi_A 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149 (260)
T ss_dssp HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence 986432 11345589999999999999999999999999998887 467777777777
Q ss_pred hccccchhhhhhcccHHHHHHHHhcc-CCCCCccCCCCCCCHHHHHHHcCC---------hHHHHHHHhcCCCCC-----
Q 039863 254 REYTLQTYYYFFRKDREIIKVLLRSS-KGTQTTKPDQQGWLPLHLAAHLGN---------YYVVKELLKADISAA----- 318 (563)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~Ll~~~-~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~----- 318 (563)
.+ +.+++++|++.+ .+.+++..|..|.||||+|+..++ .+++++|++.|+++.
T Consensus 150 ~g------------~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 150 TN------------QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp TT------------CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred cC------------CHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence 76 677777777621 266667777777777777776665 466666666655542
Q ss_pred -ccCCCCCChHHHHHHhcCCHHHHHHHHHhCCC
Q 039863 319 -YKPDNEGKIPLHLAAGKGRAYTMQELIRSCPS 350 (563)
Q Consensus 319 -~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 350 (563)
...|..|.||||+|+..|+.+++++|+++++.
T Consensus 218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 23456666666666666666666666665543
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=4.2e-29 Score=237.57 Aligned_cols=203 Identities=17% Similarity=0.177 Sum_probs=165.8
Q ss_pred hhhHHHHHHHHHcCChhhhhhhhh----ccccc--c----CCCCCceeeeec---ccCCCCCCCCCCccchhHHHHhhhh
Q 039863 27 IQLMDNLYEAAVEGHVGKFEEHKA----VLHQI--L----TPNENTILHIHI---TALPNKTMKPNNKANSLWRMISTFK 93 (563)
Q Consensus 27 ~~~~~~L~~Aa~~g~~~~v~~Ll~----~~~~~--~----~~~g~t~Lh~A~---~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (563)
..+.++||.||+.|+++.++.|++ .+.++ . +..|.||||+|+ .
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~------------------------ 58 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLS------------------------ 58 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCB------------------------
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhh------------------------
Confidence 467889999999999998887777 55444 3 366999999988 6
Q ss_pred ccCCCchhhhhhhhhHHHHHHHhCchh----------hhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhH
Q 039863 94 KQSSSDDREVIRGENFVRVILEMCPIL----------LLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGV 163 (563)
Q Consensus 94 ~~~g~~~~~~~~~~~~v~~Ll~~~~~~----------l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 163 (563)
.| +.+++++|++.+.+. +...+..|.||||+||..|+.++|++|++.|++++..+.....
T Consensus 59 --~g--------~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~ 128 (260)
T 3jxi_A 59 --AG--------RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF 128 (260)
T ss_dssp --TT--------BCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC
T ss_pred --cC--------CHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc
Confidence 79 999999999876541 2334458999999999999999999999999986542210000
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHh---cCCCCccccCcCCCcHHHHHHHcCC---------HHHHHHHH
Q 039863 164 AAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTK---EDPNLSYDANEAGETPLYLAAERGY---------KDVMEDIL 231 (563)
Q Consensus 164 ~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll 231 (563)
.. ......+..|.||||+|+..|+.+++++|++ .+.++. ..|..|.||||+|+..++ .+++++|+
T Consensus 129 ~~--~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll 205 (260)
T 3jxi_A 129 QP--KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL 205 (260)
T ss_dssp SS--SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred Cc--ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 00 0000111679999999999999999999999 888887 578999999999999888 79999999
Q ss_pred hcCCCC-------CCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhc
Q 039863 232 STCESP-------VDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRS 278 (563)
Q Consensus 232 ~~~~~~-------~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 278 (563)
+.|+++ +..+..|.||||+|+..+ +.+++++|+++
T Consensus 206 ~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g------------~~~~v~~Ll~~ 247 (260)
T 3jxi_A 206 IKCAKLFPDTNLEALLNNDGLSPLMMAAKTG------------KIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT------------CHHHHHHHHHH
T ss_pred HhCcccccccchhhcccCCCCCHHHHHHHcC------------CHHHHHHHHHh
Confidence 999887 568999999999999999 99999999997
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=3.1e-31 Score=262.91 Aligned_cols=265 Identities=16% Similarity=0.070 Sum_probs=185.5
Q ss_pred hhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHH
Q 039863 106 GENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV 185 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~ 185 (563)
+.++++++++++.+ +.||||+||..|+.++|++|++.|+.... ....+..|.||||+|+
T Consensus 78 ~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------------~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 78 AKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEI-------------VKVIQAENYQAFRLAA 136 (376)
T ss_dssp CTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSS-------------CC--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------------HHHhccCCCCHHHHHH
Confidence 77888888877544 45999999999999999999998873211 1123455778999999
Q ss_pred HcCCHHHHHHHHhcCCCCc--cccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCcHHHHHH-hhccccch
Q 039863 186 RYNQVDVVKMLTKEDPNLS--YDANEAGETPLYLAAERGYKDVMEDILSTCESPVD--HGPMGRTALHAAA-FREYTLQT 260 (563)
Q Consensus 186 ~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~~ 260 (563)
..|+.++|++|++.+++.. ...+.. .||||+|+..|+.+++++|+++|++++. .+..|.||||.|+ ..|
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G----- 210 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG----- 210 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC-----
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC-----
Confidence 9999999999999997521 111222 8999999999999999999999988766 7778899999999 999
Q ss_pred hhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHH
Q 039863 261 YYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYT 340 (563)
Q Consensus 261 ~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 340 (563)
+.+++++|++. +. .|.||||+|+..|+.+++++|++.+.+... ..++++.|+..|+.++
T Consensus 211 -------~~eiv~~Ll~~--ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~-----~~~~l~~A~~~g~~~v 269 (376)
T 2aja_A 211 -------HHNVINFLLDC--PV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE-----MHDAFKLSNPDGVFDL 269 (376)
T ss_dssp -------CHHHHHHHTTS--HH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH-----HHTTTTTTSSSSCCCC
T ss_pred -------CHHHHHHHHhC--CC-------ccchHHHHHHHCCCHHHHHHHHhcCccccc-----ccHHHHHHHHCCChhh
Confidence 99999999985 32 378999999999999999999998766521 1246778888887664
Q ss_pred H------------HHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCC--CCCCCCCChHHHHHHHcC
Q 039863 341 M------------QELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLM--NEKNYDGNTPLLEHAVSG 406 (563)
Q Consensus 341 v------------~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~i--n~~d~~G~TpLh~A~~~~ 406 (563)
+ +.|+..+. .+..+.+++|++.+.....+ ......++||||+|+..|
T Consensus 270 v~~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g 330 (376)
T 2aja_A 270 VTKSECLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330 (376)
T ss_dssp SSHHHHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT
T ss_pred hcHHhhhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcC
Confidence 3 33333321 12356677777654322221 223346789999999988
Q ss_pred -CchhhhccCcccCccccccCCCCHHHHHHhcccc
Q 039863 407 -SFIKSFVCHPKVDRLAFNHQNNSAEDIIRSKKVL 440 (563)
Q Consensus 407 -~~~~~~l~~~g~d~~~~n~~g~t~l~~a~~~~~~ 440 (563)
..++++|++.| .+++..|+|+++++...+..
T Consensus 331 ~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~ 362 (376)
T 2aja_A 331 NQGACALLLSIP---SVLALTKANNYYINETGGRL 362 (376)
T ss_dssp CTTHHHHHTTSH---HHHHSCC-------------
T ss_pred cHHHHHHHHcCh---HHHHHHHHhccccccccccc
Confidence 55678888765 78888999999998876643
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.6e-27 Score=215.56 Aligned_cols=165 Identities=24% Similarity=0.258 Sum_probs=141.5
Q ss_pred hhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 039863 119 ILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTK 198 (563)
Q Consensus 119 ~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 198 (563)
.+++.+|..|.||||+||..|+.++|++|++.++++. ..+..|.||||+|+..|+.+++++|++
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 89 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE----------------DKDIEGSTALIWAVKNNRLGIAEKLLS 89 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc----------------cccccCccHHHHHHHcCCHHHHHHHHH
Confidence 3456788899999999999999999999999988744 477889999999999999999999999
Q ss_pred cCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhc
Q 039863 199 EDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRS 278 (563)
Q Consensus 199 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 278 (563)
.++++. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||+|+..+ +.+++++|++.
T Consensus 90 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~ 156 (192)
T 2rfm_A 90 KGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG------------RSEIVKKLLEL 156 (192)
T ss_dssp HTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT------------CHHHHHHHHHT
T ss_pred CCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHC
Confidence 988876 46778899999999999999999999988888888888888888888888 88888888886
Q ss_pred cCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcC
Q 039863 279 SKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKAD 314 (563)
Q Consensus 279 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 314 (563)
+.+++..|..|.||||+|+..|+.+++++|++.+
T Consensus 157 --ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 157 --GADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp --TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 7788888888888888888888888888887753
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=228.38 Aligned_cols=178 Identities=22% Similarity=0.257 Sum_probs=107.3
Q ss_pred hhhHHHHHHHhCch-hhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcC-CCCCCCCchhHHHHHHHhccCCCCCCcHHHH
Q 039863 106 GENFVRVILEMCPI-LLLKANAKGETLLHIAARHGHYDIVKVLIAECK-KPHQNNPEEGVAAARLMLGTTNEAKDTALHE 183 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~-~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~ 183 (563)
+.+.++.++....+ .++..|..|.||||+||..|+.++|++|++.|+ + ++..+..|.||||+
T Consensus 88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~----------------~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK----------------VDKQNRAGYSPIML 151 (276)
T ss_dssp HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC----------------TTCCCTTSCCHHHH
T ss_pred HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc----------------CCCCCCCCCCHHHH
Confidence 66666666554433 345566666666666666666666666666665 3 22355666666666
Q ss_pred HH-----HcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhcccc
Q 039863 184 AV-----RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTL 258 (563)
Q Consensus 184 A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 258 (563)
|+ ..++.+++++|++.+.... ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g--- 227 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG--- 227 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT---
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC---
Confidence 66 4455666666666664443 34555666666666666666666666666666666666666666666666
Q ss_pred chhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhc
Q 039863 259 QTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKA 313 (563)
Q Consensus 259 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 313 (563)
+.+++++|++. .+.+++..|..|.||||+|+..|+.+++++|+++
T Consensus 228 ---------~~~iv~~Ll~~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 228 ---------HKEIAGLLLAV-PSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp ---------CHHHHHHHHTS-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHhc-CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 56666666652 2555566666666666666666666666666553
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=9.4e-28 Score=229.81 Aligned_cols=187 Identities=20% Similarity=0.260 Sum_probs=119.9
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCC--CccccCcCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHH---
Q 039863 179 TALHEAVRYNQVDVVKMLTKEDPN--LSYDANEAGETPLYLAAERGYKDVMEDILSTCE-SPVDHGPMGRTALHAAA--- 252 (563)
Q Consensus 179 t~L~~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~Lh~A~--- 252 (563)
+++|.|+..|+.+.++.+++.+.+ ++ ..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||.|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n-~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVN-IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCc-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 455666666666666655554332 22 345556666666666666666666666665 55666666666666666
Q ss_pred --hhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHH
Q 039863 253 --FREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLH 330 (563)
Q Consensus 253 --~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 330 (563)
..+ +.+++++|++. +...+..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||
T Consensus 157 ~~~~~------------~~~~v~~Ll~~--g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh 221 (276)
T 4hbd_A 157 LKTQD------------DIETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALM 221 (276)
T ss_dssp CCSHH------------HHHHHHHHHHH--SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred hhhhh------------hHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHH
Confidence 333 66667777665 5566666666777777777777777777777776666 445667777777
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhC
Q 039863 331 LAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 331 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 381 (563)
+|+..|+.+++++|++..+..++.+|..|+||||+|+.+|+.+++++|+++
T Consensus 222 ~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 777777777777777633333466677777777777777777777777765
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=2.2e-27 Score=210.50 Aligned_cols=170 Identities=19% Similarity=0.203 Sum_probs=151.3
Q ss_pred CCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcC
Q 039863 60 ENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETLLHIAARHG 139 (563)
Q Consensus 60 g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g 139 (563)
+.||||.|+. .| +.+++++|++.++..++.++..|.||||+||..|
T Consensus 2 ~~~~L~~A~~--------------------------~g--------~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~ 47 (172)
T 3v30_A 2 DSLSIHQLAA--------------------------QG--------ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG 47 (172)
T ss_dssp --CCHHHHHH--------------------------TT--------CHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTT
T ss_pred chhhHHHHHH--------------------------cC--------CHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcC
Confidence 4689999999 99 9999999999999888999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHH
Q 039863 140 HYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAA 219 (563)
Q Consensus 140 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 219 (563)
+.++|++|++.|++++ ..+..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+
T Consensus 48 ~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 110 (172)
T 3v30_A 48 EIETVRFLLEWGADPH----------------ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAV 110 (172)
T ss_dssp CHHHHHHHHHHTCCTT----------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHcCCCch----------------hhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence 9999999999998854 478889999999999999999999999999987 47889999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCH
Q 039863 220 ERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLP 294 (563)
Q Consensus 220 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tp 294 (563)
..|+.+++++|++.|++++..+..|.||||+|+..+ +.+++++|++. +......+..|.||
T Consensus 111 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~------------~~~~~~~L~~~--~~~~~~~~~~~~~p 171 (172)
T 3v30_A 111 RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG------------YRKVQQVIENH--ILKLFQSNLVPADP 171 (172)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT------------CHHHHHHHHHH--HHHHSCC-------
T ss_pred HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhC------------cHHHHHHHHHH--HHHHhcccCCCCCC
Confidence 999999999999999999999999999999999999 99999999997 66666666666665
No 60
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=6.4e-31 Score=260.65 Aligned_cols=276 Identities=13% Similarity=0.090 Sum_probs=193.1
Q ss_pred hhHHHHHHHHH-cCChhhhhhhhhccccccCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhh
Q 039863 28 QLMDNLYEAAV-EGHVGKFEEHKAVLHQILTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRG 106 (563)
Q Consensus 28 ~~~~~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 106 (563)
.+.+.++.|+. .++.+.+++|++.|.+ ++||||+|+. .| +
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~-----~~T~Lh~Aa~--------------------------~G--------~ 104 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKGIK-----SEVICFVAAI--------------------------TG--------C 104 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHTCC-----HHHHHHHHHH--------------------------HC--------C
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCC-----cCCHHHHHHH--------------------------cC--------C
Confidence 34557787777 5889999999987765 4599999999 99 9
Q ss_pred hhHHHHHHHhCchh--hhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHH
Q 039863 107 ENFVRVILEMCPIL--LLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEA 184 (563)
Q Consensus 107 ~~~v~~Ll~~~~~~--l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A 184 (563)
.++|++|++.+... ....+..|.||||+||..|+.++|++|++.|++... .+..+.. .||||+|
T Consensus 105 ~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~-~TpLh~A 170 (376)
T 2aja_A 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-------------AMIQAEN-YHAFRLA 170 (376)
T ss_dssp HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH-HHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-------------cccCCCC-CCHHHHH
Confidence 99999999887621 113455678999999999999999999999975210 0111122 8999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcc-ccCcCCCcHHHHHH-HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhh
Q 039863 185 VRYNQVDVVKMLTKEDPNLSY-DANEAGETPLYLAA-ERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYY 262 (563)
Q Consensus 185 ~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~ 262 (563)
+..|+.++|++|++.|+++.. ..+..|.||||+|+ ..|+.+++++|++.|+ .|.||||.|+..|
T Consensus 171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g------- 236 (376)
T 2aja_A 171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG------- 236 (376)
T ss_dssp HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT-------
T ss_pred HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC-------
Confidence 999999999999999988653 25677899999999 9999999999999764 3899999999999
Q ss_pred hhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHH------------HHHHhcCCCCCccCCCCCChHHH
Q 039863 263 YFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVV------------KELLKADISAAYKPDNEGKIPLH 330 (563)
Q Consensus 263 ~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v------------~~Ll~~~~~~~~~~~~~g~tpL~ 330 (563)
+.+++++|++. +.+++..+ ++++.|+..|+.+++ +.|+..+
T Consensus 237 -----~~evv~lL~~~--ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~---------------- 289 (376)
T 2aja_A 237 -----EKYVNPFIARH--VNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN---------------- 289 (376)
T ss_dssp -----TTTHHHHHHHH--HHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC----------------
T ss_pred -----CHHHHHHHHhc--Cccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc----------------
Confidence 88999999986 54444332 356677777776533 3344332
Q ss_pred HHHhcCCHHHHHHHHHhCCCC----ccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC
Q 039863 331 LAAGKGRAYTMQELIRSCPSS----CELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG 406 (563)
Q Consensus 331 ~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~ 406 (563)
..+..+.+++|++..... .....+.+.|+||+|+..|+.+++++|++. + ...|..|+|++.+|-..|
T Consensus 290 ---~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~---~---~v~~~~~~~~~~~~~~~~ 360 (376)
T 2aja_A 290 ---DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI---P---SVLALTKANNYYINETGG 360 (376)
T ss_dssp ---CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS---H---HHHHSCC-----------
T ss_pred ---hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC---h---HHHHHHHHhccccccccc
Confidence 112356666666532210 011234566888888888888888888876 2 556778888888887777
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=9.2e-27 Score=210.46 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=126.3
Q ss_pred HhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 039863 169 MLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTAL 248 (563)
Q Consensus 169 ~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 248 (563)
+++.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.|||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 455678888888888888888888888888877766 4667788888888888888888888888888777777788888
Q ss_pred HHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChH
Q 039863 249 HAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIP 328 (563)
Q Consensus 249 h~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 328 (563)
|.|+..+ +.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|+++ ...|..|.||
T Consensus 106 ~~A~~~~------------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~ 170 (192)
T 2rfm_A 106 MWSIIFG------------YSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTA 170 (192)
T ss_dssp HHHHHHT------------CHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBH
T ss_pred HHHHHcC------------CHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCH
Confidence 8888777 77888888775 7777777777777777777777777777777777766 4456777777
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 039863 329 LHLAAGKGRAYTMQELIRS 347 (563)
Q Consensus 329 L~~A~~~g~~~~v~~Ll~~ 347 (563)
||+|+..|+.+++++|++.
T Consensus 171 l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHhc
Confidence 7777777777777777765
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.8e-26 Score=203.49 Aligned_cols=158 Identities=23% Similarity=0.250 Sum_probs=116.0
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 039863 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYD 206 (563)
Q Consensus 127 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 206 (563)
.|.||||.||..|+.++|++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN----------------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC----------------CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence 46778888888888888888887776533 366777788888888888888888887777765 3
Q ss_pred cCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCcc
Q 039863 207 ANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTK 286 (563)
Q Consensus 207 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~ 286 (563)
.+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|++. +.+++.
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--g~~~~~ 130 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN------------HVKCVKMLLES--GADPTI 130 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCC
Confidence 5667777777777777777777777777777777777777777777777 77777777775 666677
Q ss_pred CCCCCCCHHHHHHHcCChHHHHHHHhcCC
Q 039863 287 PDQQGWLPLHLAAHLGNYYVVKELLKADI 315 (563)
Q Consensus 287 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 315 (563)
.+..|.||||+|+..|+.+++++|++.+.
T Consensus 131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 131 ETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 77777777777777777777777766543
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.1e-26 Score=205.97 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=93.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccc
Q 039863 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYT 257 (563)
Q Consensus 178 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~ 257 (563)
.||||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-- 80 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG-- 80 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT--
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC--
Confidence 466777777777777777777666644455666677777777777777777776666666666666666666666665
Q ss_pred cchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCC
Q 039863 258 LQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGR 337 (563)
Q Consensus 258 ~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 337 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|+
T Consensus 81 ----------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 147 (172)
T 3v30_A 81 ----------YTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGY 147 (172)
T ss_dssp ----------CHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred ----------CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCc
Confidence 56666666654 5555555555555555555555555555555555444 3334445555555555555
Q ss_pred HHHHHHHHHhCC
Q 039863 338 AYTMQELIRSCP 349 (563)
Q Consensus 338 ~~~v~~Ll~~~~ 349 (563)
.+++++|+++++
T Consensus 148 ~~~~~~L~~~~~ 159 (172)
T 3v30_A 148 RKVQQVIENHIL 159 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.2e-26 Score=203.55 Aligned_cols=155 Identities=27% Similarity=0.364 Sum_probs=96.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCC
Q 039863 211 GETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQ 290 (563)
Q Consensus 211 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~ 290 (563)
..|||+.|+..|+.+++++|++.+.+++..+..|.||||.|+. + +.+++++|++. +.+++..+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~------------~~~~v~~Ll~~--g~~~~~~~~~ 69 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-G------------NPEIARRLLLR--GANPDLKDRT 69 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-S------------CHHHHHHHHHT--TCCTTCCCTT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-C------------cHHHHHHHHHc--CCCCCCCCCC
Confidence 3455666666666666666666555555555566666666555 5 56666666654 5555566666
Q ss_pred CCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcC
Q 039863 291 GWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSG 370 (563)
Q Consensus 291 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 370 (563)
|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++++++.++..|..|+||||+|+.++
T Consensus 70 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~ 148 (162)
T 1ihb_A 70 GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148 (162)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC
Confidence 666666666666666666666666555 3445666666666666666666666666666655566666666666666666
Q ss_pred ChHHHHHhhhC
Q 039863 371 SRRTVEFLLEN 381 (563)
Q Consensus 371 ~~~iv~~Ll~~ 381 (563)
+.+++++|+++
T Consensus 149 ~~~~~~~Ll~~ 159 (162)
T 1ihb_A 149 RNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 66666666665
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=3.8e-26 Score=201.82 Aligned_cols=160 Identities=28% Similarity=0.347 Sum_probs=119.1
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 039863 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNL 203 (563)
Q Consensus 124 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 203 (563)
....+.|+||.||..|+.++|++|++.|.+.+ .++..|.||||+|+..|+.+++++|++.+.++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN----------------AEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 34455678888888888888888888877643 36677788888888888888888888877776
Q ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCC
Q 039863 204 SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQ 283 (563)
Q Consensus 204 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 283 (563)
. ..+..|.||||+|+..|+.+++++|++++++++..+..|.||||.|+..+ +.+++++|++. +.+
T Consensus 74 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--g~~ 138 (169)
T 2y1l_E 74 N-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG------------HLEIVEVLLKN--GAD 138 (169)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--TCC
T ss_pred C-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCC
Confidence 5 35667778888888888888888888877777777777777777777777 77777777775 677
Q ss_pred CccCCCCCCCHHHHHHHcCChHHHHHHHhcC
Q 039863 284 TTKPDQQGWLPLHLAAHLGNYYVVKELLKAD 314 (563)
Q Consensus 284 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 314 (563)
++..|..|.||||+|+..|+.+++++|++.|
T Consensus 139 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 7777777777777777777777777777653
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.9e-26 Score=202.24 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=148.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhc
Q 039863 176 AKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFRE 255 (563)
Q Consensus 176 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 255 (563)
...||||.|+..|+.+++++|++.++++. ..+..|.||||+|+. |+.+++++|++.+++++..+..|.||||.|+..+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 45699999999999999999999999886 478899999999999 9999999999999999999999999999999999
Q ss_pred cccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhc
Q 039863 256 YTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGK 335 (563)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 335 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..
T Consensus 82 ------------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~ 147 (162)
T 1ihb_A 82 ------------FLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147 (162)
T ss_dssp ------------CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred ------------CHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc
Confidence 99999999997 8999999999999999999999999999999999987677899999999999999
Q ss_pred CCHHHHHHHHHhCCC
Q 039863 336 GRAYTMQELIRSCPS 350 (563)
Q Consensus 336 g~~~~v~~Ll~~~~~ 350 (563)
|+.+++++|+++|++
T Consensus 148 ~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 148 GRNEVVSLMQANGAG 162 (162)
T ss_dssp TCHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHhCCC
Confidence 999999999998763
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=3.5e-26 Score=201.66 Aligned_cols=157 Identities=24% Similarity=0.265 Sum_probs=107.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhcc
Q 039863 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREY 256 (563)
Q Consensus 177 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~ 256 (563)
|.||||.|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG- 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-
Confidence 5677777777777777777777766654 35666777777777777777777777777777666677777777777766
Q ss_pred ccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcC
Q 039863 257 TLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKG 336 (563)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 336 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|
T Consensus 81 -----------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 146 (167)
T 3v31_A 81 -----------YTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALG 146 (167)
T ss_dssp -----------CHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred -----------CHHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence 66777777765 6666666666677777777767777777776666665 344666666666666666
Q ss_pred CHHHHHHHHHhCC
Q 039863 337 RAYTMQELIRSCP 349 (563)
Q Consensus 337 ~~~~v~~Ll~~~~ 349 (563)
+.+++++|++++.
T Consensus 147 ~~~~~~~L~~~~~ 159 (167)
T 3v31_A 147 YRSVQQVIESHLL 159 (167)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666543
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1e-25 Score=198.98 Aligned_cols=156 Identities=29% Similarity=0.397 Sum_probs=90.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhh
Q 039863 175 EAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFR 254 (563)
Q Consensus 175 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~ 254 (563)
..+.++|+.|++.|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 334556666666666666666666666554 3455566666666666666666666666666655555666666666655
Q ss_pred ccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHh
Q 039863 255 EYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAG 334 (563)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 334 (563)
+ +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+.
T Consensus 91 ~------------~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 155 (169)
T 2y1l_E 91 G------------HLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISID 155 (169)
T ss_dssp T------------CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred C------------CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 5 55666666654 5555555555555555555555555555555555554 3345555555555555
Q ss_pred cCCHHHHHHHHH
Q 039863 335 KGRAYTMQELIR 346 (563)
Q Consensus 335 ~g~~~~v~~Ll~ 346 (563)
.|+.+++++|++
T Consensus 156 ~~~~~~~~~L~~ 167 (169)
T 2y1l_E 156 NGNEDLAEILQK 167 (169)
T ss_dssp TTCHHHHHHHHT
T ss_pred hCCHHHHHHHHH
Confidence 555555555554
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.9e-28 Score=227.39 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=92.0
Q ss_pred cHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039863 268 DREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRS 347 (563)
Q Consensus 268 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 347 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.
T Consensus 33 ~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 109 (229)
T 2vge_A 33 ELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH 109 (229)
T ss_dssp CHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 55555555554 4455555555555555555555555555555555554 33455555555555555555555555555
Q ss_pred CCCCccccccCCChHHHHH--HHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCchhhhccCcccC--cccc
Q 039863 348 CPSSCELVDDRGWNVFHFA--AHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSFIKSFVCHPKVD--RLAF 423 (563)
Q Consensus 348 ~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~~~~~l~~~g~d--~~~~ 423 (563)
+.+.....+..|+||||+| +..++.+++++|++. |++++.+|..|.||||.++... ..++|+..|++ ++.+
T Consensus 110 ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~~l~~~~~~~--~~~~ll~~ga~~~~~~~ 184 (229)
T 2vge_A 110 GAAIFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNSGAVYALWDYSAEF--GDELSFREGESVTVLRR 184 (229)
T ss_dssp TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGGGEEEESSCBCCSS--TTBCCBCTTCEEEEEES
T ss_pred CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccCCchHHHHHHhhcc--ccccCcccccccccccc
Confidence 5544222224566666666 666666666666665 5666666666666666443332 22455566666 5566
Q ss_pred ccCCCCHHHHHHhccc
Q 039863 424 NHQNNSAEDIIRSKKV 439 (563)
Q Consensus 424 n~~g~t~l~~a~~~~~ 439 (563)
|..|.||+++|...+.
T Consensus 185 d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 185 DGPEETDWWWAALHGQ 200 (229)
T ss_dssp SCTTCSSEEEEEETTE
T ss_pred CCCcccHHHHHHHcCC
Confidence 6666666666665543
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.6e-28 Score=225.62 Aligned_cols=188 Identities=19% Similarity=0.209 Sum_probs=123.4
Q ss_pred HHHHhcCCCCc--cccCcCCCcHHHHHHHcCCHHHH----HHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcc
Q 039863 194 KMLTKEDPNLS--YDANEAGETPLYLAAERGYKDVM----EDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRK 267 (563)
Q Consensus 194 ~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~ 267 (563)
+.|++++.+.. ...+..+.||||+|+..| - ++|++.|++++..+..|.||||+|+..+
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g------------ 65 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTG----ELEVVQQAVKEMNDPSQPNEEGITALHNAICGA------------ 65 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHT----CHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTT------------
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcC----CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC------------
Confidence 45666655443 223445666777777654 2 2366677777777777777777777777
Q ss_pred cHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHH--HhcCCHHHHHHHH
Q 039863 268 DREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLA--AGKGRAYTMQELI 345 (563)
Q Consensus 268 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll 345 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++....+..|.||||+| +..|+.+++++|+
T Consensus 66 ~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll 143 (229)
T 2vge_A 66 NYSIVDFLITA--GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143 (229)
T ss_dssp CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH
Confidence 77777777775 6777777777777777777777777777777777777544446777777777 7777777777777
Q ss_pred HhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccC--CCCCCCCCChHHHHHHHcC
Q 039863 346 RSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNL--MNEKNYDGNTPLLEHAVSG 406 (563)
Q Consensus 346 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~--in~~d~~G~TpLh~A~~~~ 406 (563)
+.+++. +..|..|.|++|.++... ..++|++. |++ ++.+|..|+||||+|+..|
T Consensus 144 ~~ga~~-~~~~~~~~~~l~~~~~~~---~~~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 144 DVEQSM-GLMNSGAVYALWDYSAEF---GDELSFRE---GESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp HHHHHT-TTSGGGEEEESSCBCCSS---TTBCCBCT---TCEEEEEESSCTTCSSEEEEEETT
T ss_pred HcCCCc-ccccCCchHHHHHHhhcc---ccccCccc---cccccccccCCCcccHHHHHHHcC
Confidence 776654 556777777777544433 22455555 444 6677777777777777777
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=1.5e-25 Score=194.42 Aligned_cols=150 Identities=23% Similarity=0.291 Sum_probs=102.5
Q ss_pred CcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccC
Q 039863 129 ETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDAN 208 (563)
Q Consensus 129 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~ 208 (563)
.||||.|+..|+.++|++|++.|.+.. .+..|.||||+|+..|+.+++++|++.+.++. ..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 64 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-----------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART 64 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-----------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence 467777777777777777777766431 35566777777777777777777777766655 356
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCC
Q 039863 209 EAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPD 288 (563)
Q Consensus 209 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d 288 (563)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+ +.+++++|++. +.+++..+
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--ga~~~~~~ 130 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN------------HQEVVELLIKY--GADVHTQS 130 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTCCC
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCCccccC
Confidence 66777777777777777777777777766666666777777777666 66677776665 66666666
Q ss_pred CCCCCHHHHHHHcCChHHHHHH
Q 039863 289 QQGWLPLHLAAHLGNYYVVKEL 310 (563)
Q Consensus 289 ~~g~tpLh~A~~~g~~~~v~~L 310 (563)
..|.||||+|+..|+.+++++|
T Consensus 131 ~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 131 KFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHh
Confidence 6666666666666666666655
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=4.6e-26 Score=203.35 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=152.5
Q ss_pred CCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhHHHHHHHhCchhhhcccCCCCcHHHHHH
Q 039863 57 TPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENFVRVILEMCPILLLKANAKGETLLHIAA 136 (563)
Q Consensus 57 ~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~ 136 (563)
++.+.++||.|+. .| +.+++++|++.++..++..+..|.||||+||
T Consensus 2 ~~~~~~~l~~A~~--------------------------~g--------~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~ 47 (179)
T 3f6q_A 2 SPEFMDDIFTQCR--------------------------EG--------NAVAVRLWLDNTENDLNQGDDHGFSPLHWAC 47 (179)
T ss_dssp -----CCHHHHHH--------------------------HT--------CHHHHHHHHHCTTSCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHHHH--------------------------cC--------CHHHHHHHHhcCcccccccCCCCCCHHHHHH
Confidence 3567899999999 99 9999999999988878899999999999999
Q ss_pred HcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHH
Q 039863 137 RHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLY 216 (563)
Q Consensus 137 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 216 (563)
..|+.++|++|++.|++++ ..+..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||
T Consensus 48 ~~~~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~ 110 (179)
T 3f6q_A 48 REGRSAVVEMLIMRGARIN----------------VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLH 110 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTT----------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred HcCcHHHHHHHHHcCCCCC----------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHH
Confidence 9999999999999998854 478899999999999999999999999999987 47889999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCC
Q 039863 217 LAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQ 290 (563)
Q Consensus 217 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~ 290 (563)
+|+..|+.+++++|+++|++++..+..|.||||.|+..+ +.+++++|++. +.+++..+..
T Consensus 111 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~------------~~~~~~~L~~~--g~~~~~~~~~ 170 (179)
T 3f6q_A 111 YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL------------RELLRERAEKM--GQNLNRIPYK 170 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHH------------HHHHHHHHHHT--TCCCSCBCCC
T ss_pred HHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHH------------HHHHHHHHHHh--hcCcccCCcc
Confidence 999999999999999999999999999999999999998 99999999997 7777665544
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=4.7e-26 Score=203.31 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=152.1
Q ss_pred CCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccC
Q 039863 242 PMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKP 321 (563)
Q Consensus 242 ~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 321 (563)
..+.++||.|+..+ +.+++++|++. .+.+++..+..|.||||+|+..|+.+++++|++.|+++ ...
T Consensus 3 ~~~~~~l~~A~~~g------------~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~ 68 (179)
T 3f6q_A 3 PEFMDDIFTQCREG------------NAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVM 68 (179)
T ss_dssp ----CCHHHHHHHT------------CHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred HHHHHHHHHHHHcC------------CHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCc
Confidence 45789999999999 99999999997 67889999999999999999999999999999999888 556
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHH
Q 039863 322 DNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLE 401 (563)
Q Consensus 322 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~ 401 (563)
+..|.||||+|+..|+.+++++|++++.+. +..|..|+||||+|+..++.+++++|++. |++++.+|..|.||||+
T Consensus 69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~ 144 (179)
T 3f6q_A 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDK 144 (179)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSSBCCTTSCCGGGG
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCcchhccCCCCcHHH
Confidence 889999999999999999999999998765 77899999999999999999999999999 88999999999999999
Q ss_pred HHHcC-CchhhhccCcccCccccccCC
Q 039863 402 HAVSG-SFIKSFVCHPKVDRLAFNHQN 427 (563)
Q Consensus 402 A~~~~-~~~~~~l~~~g~d~~~~n~~g 427 (563)
|+..+ ..+.++|++.|++++..+..+
T Consensus 145 A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 145 AKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp SCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 99887 456699999999999877665
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=2.2e-25 Score=193.44 Aligned_cols=150 Identities=27% Similarity=0.296 Sum_probs=111.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccc
Q 039863 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYT 257 (563)
Q Consensus 178 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~ 257 (563)
.|+|+.|+..|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-- 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-- 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT--
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC--
Confidence 467888888888888888888877654 4667788888888888888888888877777777777777777777777
Q ss_pred cchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCC
Q 039863 258 LQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGR 337 (563)
Q Consensus 258 ~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 337 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|+
T Consensus 79 ----------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 79 ----------HANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp ----------CHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred ----------hHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence 77777777775 6677777777777777777777777777777776665 4456667777777777777
Q ss_pred HHHHHHH
Q 039863 338 AYTMQEL 344 (563)
Q Consensus 338 ~~~v~~L 344 (563)
.+++++|
T Consensus 146 ~~i~~~L 152 (153)
T 1awc_B 146 EDLAEIL 152 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666655
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1e-25 Score=198.16 Aligned_cols=161 Identities=27% Similarity=0.313 Sum_probs=131.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 039863 173 TNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAA 252 (563)
Q Consensus 173 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~ 252 (563)
.|..|.||||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 46677899999999999999999998765554456777889999999999999999999998888888888888888888
Q ss_pred hhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 039863 253 FREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLA 332 (563)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 332 (563)
..+ +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ ..+|..|.||||+|
T Consensus 84 ~~~------------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a 148 (165)
T 3twr_A 84 SYG------------HYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLV 148 (165)
T ss_dssp HTT------------CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGS
T ss_pred HcC------------cHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhH
Confidence 888 88888888886 7888888888888888888888888888888888776 55677888888886
Q ss_pred HhcCCHHHHHHHHHhCC
Q 039863 333 AGKGRAYTMQELIRSCP 349 (563)
Q Consensus 333 ~~~g~~~~v~~Ll~~~~ 349 (563)
+. |+.+++++|++.++
T Consensus 149 ~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 149 KD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CT-TCHHHHHHHHTC--
T ss_pred hc-CChHHHHHHhhccc
Confidence 65 77788888876653
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=3.2e-27 Score=221.28 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=82.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCC
Q 039863 211 GETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQ 290 (563)
Q Consensus 211 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~ 290 (563)
|.|||+.|+..++.++++.|+++|++++.. ..|.||||.|+..+ +.+++++|++. +.+++..|..
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g------------~~~~v~~Ll~~--g~~~~~~d~~ 69 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEG------------EFDLVQRIIYE--VDDPSLPNDE 69 (239)
T ss_dssp ---------------------------------CHHHHHHHHHHT------------CHHHHHHHTST--TSSCCCCCTT
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcC------------CHHHHHHHHHc--CCCCCCcCCC
Confidence 445555555555555555555555444432 34455555555555 55555555543 4455555555
Q ss_pred CCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCC-hHHHHH--H
Q 039863 291 GWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGW-NVFHFA--A 367 (563)
Q Consensus 291 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~ 367 (563)
|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++++++. +..+..|. ||||+| +
T Consensus 70 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~ 147 (239)
T 1ycs_B 70 GITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEM 147 (239)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHh
Confidence 555555555555555555555555554 334555556666666556666666666555544 33444443 666666 5
Q ss_pred HcCChHHHHHhhhCCCcccCCCCC---------CCCCChHHHHHHHcCC
Q 039863 368 HSGSRRTVEFLLENPSLGNLMNEK---------NYDGNTPLLEHAVSGS 407 (563)
Q Consensus 368 ~~~~~~iv~~Ll~~~~~~~~in~~---------d~~G~TpLh~A~~~~~ 407 (563)
..|+.+++++|++. +++++.. |..|.+|++++...|.
T Consensus 148 ~~g~~~~~~~Ll~~---~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 148 EEGYTQCSQFLYGV---QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp STTCCCHHHHHHHH---HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred hhccHHHHHHHHHh---hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 55666666666665 4444443 6678888887777665
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1.3e-25 Score=197.55 Aligned_cols=161 Identities=27% Similarity=0.311 Sum_probs=145.2
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 039863 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNL 203 (563)
Q Consensus 124 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 203 (563)
.|..|.||||.|+..|+.++|++|++.+... +...+..|.||||+|+..|+.+++++|++.+.++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 68 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN---------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT---------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC---------------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 4667889999999999999999999865431 3357788999999999999999999999999988
Q ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCC
Q 039863 204 SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQ 283 (563)
Q Consensus 204 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 283 (563)
. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|++. +.+
T Consensus 69 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--ga~ 133 (165)
T 3twr_A 69 H-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG------------KYEICKLLLQH--GAD 133 (165)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT------------CHHHHHHHHHT--TCC
T ss_pred C-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCC
Confidence 7 47889999999999999999999999999999999999999999999999 99999999997 899
Q ss_pred CccCCCCCCCHHHHHHHcCChHHHHHHHhcCC
Q 039863 284 TTKPDQQGWLPLHLAAHLGNYYVVKELLKADI 315 (563)
Q Consensus 284 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 315 (563)
++..|..|.||||+|+. ++.+++++|++.|+
T Consensus 134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999999999776 99999999998764
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=6.5e-25 Score=191.09 Aligned_cols=150 Identities=27% Similarity=0.360 Sum_probs=78.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCC
Q 039863 213 TPLYLAAERGYKDVMEDILST-CESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQG 291 (563)
Q Consensus 213 tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g 291 (563)
|||+.|+..|+.+++++|++. +.+++..+..|.||||. +..+ +.+++++|++. +.+++..|..|
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~------------~~~~v~~Ll~~--g~~~~~~~~~g 68 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFG------------STAIALELLKQ--GASPNVQDTSG 68 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTT------------CHHHHHHHHHT--TCCTTCCCTTS
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcC------------CHHHHHHHHHC--CCCCCCcCCCC
Confidence 445555555555555555544 12444444455555555 4444 45555555543 44455555555
Q ss_pred CCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCC
Q 039863 292 WLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGS 371 (563)
Q Consensus 292 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 371 (563)
.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++. ..++..|..|+||||+|+..++
T Consensus 69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 69 TSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA 145 (156)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc
Confidence 55555555555555555555555444 33455555555555555555555555555 2234455555566666665556
Q ss_pred hHHHHHhhh
Q 039863 372 RRTVEFLLE 380 (563)
Q Consensus 372 ~~iv~~Ll~ 380 (563)
.+++++|++
T Consensus 146 ~~~v~~Ll~ 154 (156)
T 1bd8_A 146 QDLVDILQG 154 (156)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666555554
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=9.7e-25 Score=190.01 Aligned_cols=154 Identities=27% Similarity=0.312 Sum_probs=142.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhcc
Q 039863 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREY 256 (563)
Q Consensus 177 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~ 256 (563)
+.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|++.|++++..+..|.||||.|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG- 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-
Confidence 46899999999999999999998322333578899999999 9999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcC
Q 039863 257 TLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKG 336 (563)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 336 (563)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++. .++ ...+..|.||||+|+..|
T Consensus 80 -----------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~ 144 (156)
T 1bd8_A 80 -----------FLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRG 144 (156)
T ss_dssp -----------CHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSC
T ss_pred -----------cHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcC
Confidence 99999999997 899999999999999999999999999999998 665 667999999999999999
Q ss_pred CHHHHHHHHHh
Q 039863 337 RAYTMQELIRS 347 (563)
Q Consensus 337 ~~~~v~~Ll~~ 347 (563)
+.+++++|+++
T Consensus 145 ~~~~v~~Ll~~ 155 (156)
T 1bd8_A 145 AQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTT
T ss_pred cHHHHHHHHhh
Confidence 99999999875
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=9.9e-27 Score=217.91 Aligned_cols=188 Identities=21% Similarity=0.198 Sum_probs=134.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhh
Q 039863 175 EAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFR 254 (563)
Q Consensus 175 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~ 254 (563)
..|.||||.|++.++.++++.|+++|.++.. +..+.||||.|+..|+.+++++|++.+++++..+..|.||||.|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4589999999999999999999999998873 46789999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCC-ChHHHHH-
Q 039863 255 EYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEG-KIPLHLA- 332 (563)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A- 332 (563)
+ +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++... +..| .||||+|
T Consensus 81 g------------~~~~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~ 145 (239)
T 1ycs_B 81 G------------HTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCE 145 (239)
T ss_dssp T------------CHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCC
T ss_pred C------------CHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHH
Confidence 9 99999999997 8999999999999999999999999999999999998544 5555 4999999
Q ss_pred -HhcCCHHHHHHHHHhCCCCcc--------ccccCCChHHHHHHHcCChHHHHHhhhC
Q 039863 333 -AGKGRAYTMQELIRSCPSSCE--------LVDDRGWNVFHFAAHSGSRRTVEFLLEN 381 (563)
Q Consensus 333 -~~~g~~~~v~~Ll~~~~~~~~--------~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 381 (563)
+..|+.+++++|++.+.+... ..+..+.+++++++..|. ++++|.+.
T Consensus 146 ~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~ 201 (239)
T 1ycs_B 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE 201 (239)
T ss_dssp SSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC
T ss_pred HhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec
Confidence 788999999999998765421 236678899888887775 44444443
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=6.1e-24 Score=184.85 Aligned_cols=144 Identities=19% Similarity=0.162 Sum_probs=114.4
Q ss_pred ccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCCh-HH
Q 039863 285 TKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWN-VF 363 (563)
Q Consensus 285 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L 363 (563)
...+..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+ .|+.+++++|++.+.+. +.+|..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence 445778999999999999999999999999887 566889999999985 99999999999998665 778999999 99
Q ss_pred HHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCc-hhhhccCcccCccccccCCCCHHHHH
Q 039863 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDRLAFNHQNNSAEDII 434 (563)
Q Consensus 364 h~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~-~~~~l~~~g~d~~~~n~~g~t~l~~a 434 (563)
|+|+..++.+++++|++. |++++.+|..|+||||+|+..+.. ++++|+++|++++.+|..|.||.+-+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 999999999999999998 899999999999999999999854 66999999999999999999997743
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=1.9e-23 Score=177.14 Aligned_cols=133 Identities=20% Similarity=0.141 Sum_probs=122.5
Q ss_pred CCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccC-C
Q 039863 281 GTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDR-G 359 (563)
Q Consensus 281 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g 359 (563)
+.+++..+..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+. |+.+++++|++++.+. +.+|.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCC
Confidence 4578889999999999999999999999999999887 5668999999999999 9999999999998875 778888 9
Q ss_pred ChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCC-chhhhccCcccC
Q 039863 360 WNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGS-FIKSFVCHPKVD 419 (563)
Q Consensus 360 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~-~~~~~l~~~g~d 419 (563)
+||||+|+..++.+++++|++. |++++.+|..|+||||+|+..+. .++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRA---GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHT---CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999998 88999999999999999999985 466899988876
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=3e-24 Score=191.86 Aligned_cols=158 Identities=12% Similarity=0.089 Sum_probs=138.6
Q ss_pred HHHHHHHHcCChhhhhhhhhccccccC-CCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCchhhhhhhhhH
Q 039863 31 DNLYEAAVEGHVGKFEEHKAVLHQILT-PNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSDDREVIRGENF 109 (563)
Q Consensus 31 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (563)
++|+.||+.|+++.++.+++.+++..+ ..|+||||+|+. +|..+. +.++
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~--------------------------~~~~~~----~~~i 57 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLR--------------------------NNNDEA----RYKI 57 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTT--------------------------CSCHHH----HHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHH--------------------------cCCcch----HHHH
Confidence 489999999999999999999988877 789999999999 881110 3569
Q ss_pred HHHHHHhCchhhhcccCCCCcHHHHHHHcCc------HHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCC-cHHH
Q 039863 110 VRVILEMCPILLLKANAKGETLLHIAARHGH------YDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKD-TALH 182 (563)
Q Consensus 110 v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-t~L~ 182 (563)
+++|++.+.+ ++.++..|.||||+|+..|+ .++|++|++.|++++ .+|..|. ||||
T Consensus 58 v~~Ll~~Gad-vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin----------------~~d~~g~ttpLh 120 (186)
T 3t8k_A 58 SMFLINKGAD-IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT----------------ALYKPYKIVVFK 120 (186)
T ss_dssp HHHHHHTTCC-SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS----------------SCBGGGTBCTTG
T ss_pred HHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC----------------ccCCCcCchHHH
Confidence 9999999987 78889999999999999997 689999999999854 4888999 9999
Q ss_pred HHHHcC-----CHHHHHHHHh-cCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 039863 183 EAVRYN-----QVDVVKMLTK-EDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCES 236 (563)
Q Consensus 183 ~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 236 (563)
+|+..+ +.+++++|++ .|+++. ..|..|.|||++|+..|+.+++++|.+...+
T Consensus 121 ~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 121 NIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp GGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999944 4679999999 899987 5899999999999999999999999986543
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=5.6e-23 Score=183.55 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=128.9
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCC-CCCCcHHHHHHHcCCH----HHHHHHHhcCCC
Q 039863 128 GETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTN-EAKDTALHEAVRYNQV----DVVKMLTKEDPN 202 (563)
Q Consensus 128 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~ 202 (563)
+.++|+.|++.|+.+.++.++..+... .+ ..|.||||+|+..|+. +++++|++.|++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~------------------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED------------------KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC------------------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc------------------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence 457899999999999999998876541 23 5689999999998875 589999999999
Q ss_pred CccccCcCCCcHHHHHHHcCC------HHHHHHHHhcCCCCCCCCCCCC-cHHHHHHhhccccchhhhhhcccHHHHHHH
Q 039863 203 LSYDANEAGETPLYLAAERGY------KDVMEDILSTCESPVDHGPMGR-TALHAAAFREYTLQTYYYFFRKDREIIKVL 275 (563)
Q Consensus 203 ~~~~~~~~g~tpL~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~g~-t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~L 275 (563)
++ ..+..|.||||+|+..++ .+++++|+++|++++..+..|. ||||+|+..+.... ...+++++|
T Consensus 68 vn-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~-------~~~~iv~~L 139 (186)
T 3t8k_A 68 IK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN-------EMIPLYKLI 139 (186)
T ss_dssp SS-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHH-------HHHHHHHHH
T ss_pred CC-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChh-------hHHHHHHHH
Confidence 88 477889999999999887 5789999999999999999999 99999987442110 145788888
Q ss_pred HhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhc
Q 039863 276 LRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKA 313 (563)
Q Consensus 276 l~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 313 (563)
++. .+.+++..|..|.||||+|+..|+.+++++|.+.
T Consensus 140 l~~-~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 140 FSQ-SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HTS-TTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred HHh-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 882 3888888888888888888888888888888764
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=7.3e-23 Score=178.01 Aligned_cols=144 Identities=22% Similarity=0.210 Sum_probs=116.6
Q ss_pred CCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCC
Q 039863 239 DHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAA 318 (563)
Q Consensus 239 ~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 318 (563)
..+..|.||||.|+..+ +.+++++|++. +.+++..+..|.||||+|+ .|+.+++++|++.|+++
T Consensus 7 ~~~~~~~t~L~~A~~~g------------~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~- 70 (156)
T 1bi7_B 7 SSMEPSADWLATAAARG------------RVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP- 70 (156)
T ss_dssp ---CCSTTHHHHHHHHT------------CHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-
T ss_pred CCCccchHHHHHHHHcC------------CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-
Confidence 45677999999999999 99999999997 8899999999999999985 99999999999999888
Q ss_pred ccCCCCCCh-HHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCCh
Q 039863 319 YKPDNEGKI-PLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNT 397 (563)
Q Consensus 319 ~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T 397 (563)
+..+..|.| |||+|+..|+.+++++|++++.+. +.+|..|+||||+|+..++.+++++|+++ |++++.+|..|.|
T Consensus 71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t 146 (156)
T 1bi7_B 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAA---AGGTRGSNHARID 146 (156)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSC---C------------
T ss_pred CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHc---CCCCCccCcCcCc
Confidence 566889999 999999999999999999998775 77899999999999999999999999999 8999999999999
Q ss_pred HHHHH
Q 039863 398 PLLEH 402 (563)
Q Consensus 398 pLh~A 402 (563)
|.+-+
T Consensus 147 ~~~~~ 151 (156)
T 1bi7_B 147 AAEGP 151 (156)
T ss_dssp -----
T ss_pred ccccC
Confidence 98744
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=1.8e-22 Score=171.05 Aligned_cols=128 Identities=25% Similarity=0.279 Sum_probs=77.5
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCcHHHH
Q 039863 172 TTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPM-GRTALHA 250 (563)
Q Consensus 172 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~Lh~ 250 (563)
..+..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+. |+.+++++|++++++++..+.. |.||||+
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD 84 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence 455566666666666666666666666665554 345556666666666 6666666666666666665555 5666666
Q ss_pred HHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCC
Q 039863 251 AAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADI 315 (563)
Q Consensus 251 A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 315 (563)
|+..+ +.+++++|++. +.+++..|..|.||||+|+..++.+++++|++.|+
T Consensus 85 A~~~~------------~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 85 AAREG------------FLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHT------------CHHHHHHHHHT--CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHcC------------CHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 66655 56666666654 55555555566666666666666666666655543
No 87
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=6.8e-23 Score=192.20 Aligned_cols=156 Identities=19% Similarity=0.102 Sum_probs=122.7
Q ss_pred hhhHHHHHHHhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHH
Q 039863 106 GENFVRVILEMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAV 185 (563)
Q Consensus 106 ~~~~v~~Ll~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~ 185 (563)
+.+.+..+.....+ .+..|.||||+||..|+.++|++|++ +.+++ .+|..|.||||+|+
T Consensus 27 ~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~----------------~~d~~g~t~L~~A~ 85 (244)
T 3ui2_A 27 HSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-DRDVD----------------AVDENGRTALLFVA 85 (244)
T ss_dssp CCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT----------------CBCTTSCBHHHHHH
T ss_pred CCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC----------------CcCCCCCCHHHHHH
Confidence 65555444433333 45678899999999999999999999 77643 47889999999999
Q ss_pred HcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhh
Q 039863 186 RYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFF 265 (563)
Q Consensus 186 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~ 265 (563)
..|+.++|++|++.+++++...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 86 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---------- 155 (244)
T 3ui2_A 86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------- 155 (244)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH----------
T ss_pred HCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH----------
Confidence 9999999999999999987655588999999999999999999999999998888888889988887543
Q ss_pred cccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhc
Q 039863 266 RKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKA 313 (563)
Q Consensus 266 ~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 313 (563)
. ...+.+|||+|+..|+.+++++|++.
T Consensus 156 --~-------------------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 156 --K-------------------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp --T-------------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --h-------------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 1 12345666666666666666666553
No 88
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=1.1e-22 Score=181.96 Aligned_cols=142 Identities=20% Similarity=0.154 Sum_probs=124.8
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 039863 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNL 203 (563)
Q Consensus 124 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 203 (563)
.+..|.||||+||..|+.++|++|++ +.+++ .+|..|.||||+|+..|+.+++++|++.++++
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~----------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 102 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVD----------------AVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT----------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC----------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 35678999999999999999999999 77643 47889999999999999999999999999998
Q ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCC
Q 039863 204 SYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQ 283 (563)
Q Consensus 204 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 283 (563)
+...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+ +.
T Consensus 103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~------------~~-------------- 156 (183)
T 3deo_A 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------------KT-------------- 156 (183)
T ss_dssp TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH------------HT--------------
T ss_pred CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc------------cC--------------
Confidence 8654588999999999999999999999999999999999999999998765 11
Q ss_pred CccCCCCCCCHHHHHHHcCChHHHHHHHhc
Q 039863 284 TTKPDQQGWLPLHLAAHLGNYYVVKELLKA 313 (563)
Q Consensus 284 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 313 (563)
..+.+||++|+..|..+++++|.++
T Consensus 157 -----~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -----TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence 2456899999999999999988764
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=6.1e-21 Score=159.16 Aligned_cols=124 Identities=37% Similarity=0.517 Sum_probs=75.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhcc
Q 039863 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREY 256 (563)
Q Consensus 177 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~ 256 (563)
|.||||.|+..|+.+++++|++.++++. ..+..|.||||+|+..++.+++++|++.+++++..+..|.||||.|+..+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~- 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG- 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-
Confidence 5566666666666666666666665554 24555666666666666666666666666666555556666666666655
Q ss_pred ccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCC
Q 039863 257 TLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADI 315 (563)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 315 (563)
+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 80 -----------~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 -----------HLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp -----------CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred -----------hHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 55666666654 55555555556666666666666666666655543
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=4.1e-21 Score=162.64 Aligned_cols=126 Identities=30% Similarity=0.395 Sum_probs=87.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 039863 174 NEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAF 253 (563)
Q Consensus 174 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 253 (563)
...+.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||.|+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 3445677777777777777777777776665 356667777777777777777777777777777667777777777777
Q ss_pred hccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcC
Q 039863 254 REYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKAD 314 (563)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 314 (563)
.+ +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|
T Consensus 90 ~~------------~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IG------------HLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HT------------CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cC------------CHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66 67777777765 6666666667777777777777777777766543
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=1e-20 Score=157.82 Aligned_cols=125 Identities=38% Similarity=0.525 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCC
Q 039863 210 AGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQ 289 (563)
Q Consensus 210 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~ 289 (563)
+|.||||+|+..|+.+++++|++.+.+++..+..|.||||.|+..+ +.+++++|++. +.+++..+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~--g~~~~~~~~ 66 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG------------HLEVVKLLLEA--GADVNAKDK 66 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT------------CHHHHHHHHHT--TCCTTCCCT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC------------cHHHHHHHHHc--CCCCcccCC
Confidence 3677777777777777777777777777777777777777777777 77777777775 666666677
Q ss_pred CCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCC
Q 039863 290 QGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCP 349 (563)
Q Consensus 290 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 349 (563)
.|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+..|+.+++++|+++|+
T Consensus 67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 67 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 7777777777777777777777766665 3446666677777777777777777666654
No 92
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=4.5e-21 Score=162.41 Aligned_cols=125 Identities=26% Similarity=0.354 Sum_probs=84.8
Q ss_pred CcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccC
Q 039863 208 NEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKP 287 (563)
Q Consensus 208 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 287 (563)
...+.||||+|+..|+.+++++|++.+++++..+..|.||||.|+..+ +.+++++|++. +.+++..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~--g~~~~~~ 76 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG------------HLEIVEVLLKN--GADVNAV 76 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT------------CHHHHHHHHHT--TCCTTCC
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC------------CHHHHHHHHHc--CCCCCcC
Confidence 344667777777777777777777777777767777777777777766 67777777765 6666666
Q ss_pred CCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039863 288 DQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRS 347 (563)
Q Consensus 288 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 347 (563)
|..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+..|+.+++++|++.
T Consensus 77 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 666777777777777777777776666655 34456666666666666666666666654
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1e-21 Score=166.63 Aligned_cols=128 Identities=22% Similarity=0.197 Sum_probs=108.8
Q ss_pred CCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChH
Q 039863 283 QTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNV 362 (563)
Q Consensus 283 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 362 (563)
++ ..|..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.+.+. +..|..|+||
T Consensus 3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~ 79 (137)
T 3c5r_A 3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSP 79 (137)
T ss_dssp -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCH
T ss_pred CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCH
Confidence 44 57889999999999999999999999998887 566889999999999999999999999987764 7788999999
Q ss_pred HHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCC-chhhhccCc
Q 039863 363 FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGS-FIKSFVCHP 416 (563)
Q Consensus 363 Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~-~~~~~l~~~ 416 (563)
||+|+..++.+++++|++. |++++.+|..|+||||+|+..+. .+..+|.+.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 9999999999999999998 88999999999999999987763 333444433
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=4.1e-21 Score=162.95 Aligned_cols=127 Identities=25% Similarity=0.324 Sum_probs=114.8
Q ss_pred cccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 039863 123 KANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPN 202 (563)
Q Consensus 123 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 202 (563)
.+|..|.||||+||..|+.++|++|++.|+++. .++..|.||||+|+..|+.+++++|++.+.+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 68 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN----------------VKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 478899999999999999999999999998754 4788999999999999999999999999998
Q ss_pred CccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhc
Q 039863 203 LSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRS 278 (563)
Q Consensus 203 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 278 (563)
+. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+ ..+++.+|.+.
T Consensus 69 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~------------~~~~l~~l~~~ 131 (137)
T 3c5r_A 69 VN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES------------MKSLLLLPEKN 131 (137)
T ss_dssp TT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHH------------HHHHHSCC---
T ss_pred cc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhcc------------HHHHHhhcccc
Confidence 87 47888999999999999999999999999999999999999999999887 77777766553
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.83 E-value=8.8e-21 Score=169.53 Aligned_cols=110 Identities=24% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHh
Q 039863 175 EAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHG-PMGRTALHAAAF 253 (563)
Q Consensus 175 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~ 253 (563)
..|.||||+|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 345555555555555555555555 44443 244455555555555555555555555555554444 445555555555
Q ss_pred hccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHH
Q 039863 254 REYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAH 300 (563)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~ 300 (563)
.+ +.+++++|++. +.+++..|..|.||||+|+.
T Consensus 120 ~~------------~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 120 YV------------RPEVVEALVEL--GADIEVEDERGLTALELARE 152 (183)
T ss_dssp TT------------CHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHH
T ss_pred cC------------cHHHHHHHHHc--CCCCcCCCCCCCCHHHHHHH
Confidence 54 55555555544 44444455555555555543
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=178.74 Aligned_cols=137 Identities=15% Similarity=0.066 Sum_probs=62.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHhh---ccccchhhhhhcccHHHHHHHHhccCCCC
Q 039863 213 TPLYLAAERGYKDVMEDILSTCESPVD------HGPMGRTALHAAAFR---EYTLQTYYYFFRKDREIIKVLLRSSKGTQ 283 (563)
Q Consensus 213 tpL~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~Lh~A~~~---~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 283 (563)
++|+.|+..|+.+.++.|++.+++++. .+..|.||||+|+.. + +.+++++|++. +.+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~------------~~~iv~~Ll~~--gad 218 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA------------SLPLVDFIIQN--GGH 218 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTT------------THHHHHHHHHH--SSC
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccC------------cHHHHHHHHhc--CCC
Confidence 344444444444444444444444443 344444555555443 3 44455555544 444
Q ss_pred CccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHH
Q 039863 284 TTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVF 363 (563)
Q Consensus 284 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 363 (563)
++..|..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+..|+.+++++|++.+++. |.|||
T Consensus 219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~-------g~tpL 290 (301)
T 2b0o_E 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGT-------FAFPL 290 (301)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT-------TSSCC
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-------CCChh
Confidence 4444445555555555555555555555544444 333444555555555555555555555444331 34555
Q ss_pred HHHHHcCC
Q 039863 364 HFAAHSGS 371 (563)
Q Consensus 364 h~A~~~~~ 371 (563)
|+|+.+|+
T Consensus 291 h~A~~~g~ 298 (301)
T 2b0o_E 291 HVDYSWVI 298 (301)
T ss_dssp C-------
T ss_pred HHHHhcCC
Confidence 55554443
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=2.1e-20 Score=155.26 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=103.4
Q ss_pred cCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc
Q 039863 125 NAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLS 204 (563)
Q Consensus 125 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 204 (563)
+..|.||||+|+..|+.++|++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.+.++.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 67 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN----------------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT----------------SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC----------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5678899999999999999999999998744 478899999999999999999999999999987
Q ss_pred cccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhc
Q 039863 205 YDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFRE 255 (563)
Q Consensus 205 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 255 (563)
..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|...+
T Consensus 68 -~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 68 -APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred -cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence 47889999999999999999999999999999999999999999996443
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=2.6e-20 Score=174.55 Aligned_cols=108 Identities=24% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHhh
Q 039863 176 AKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHG-PMGRTALHAAAFR 254 (563)
Q Consensus 176 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~ 254 (563)
.|.||||+|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||.|+..
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 34566666666666666666665 44444 245555666666666666666666666555555544 4455555555555
Q ss_pred ccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHH
Q 039863 255 EYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAA 299 (563)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~ 299 (563)
+ +.+++++|++. +.+++..|..|.||||+|+
T Consensus 122 g------------~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 122 V------------RPEVVEALVEL--GADIEVEDERGLTALELAR 152 (244)
T ss_dssp T------------CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred C------------CHHHHHHHHHC--CCCCCCCCCCCCcHHHHHH
Confidence 5 55555555554 4555555555555555554
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=4.6e-21 Score=177.18 Aligned_cols=137 Identities=20% Similarity=0.162 Sum_probs=110.4
Q ss_pred CCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHH
Q 039863 288 DQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAA 367 (563)
Q Consensus 288 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 367 (563)
+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 567899999999999999999999999887 5668999999999999999999999999955556889999999999999
Q ss_pred HcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcC-CchhhhccCcccCccccccCCC
Q 039863 368 HSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSG-SFIKSFVCHPKVDRLAFNHQNN 428 (563)
Q Consensus 368 ~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~-~~~~~~l~~~g~d~~~~n~~g~ 428 (563)
..|+.+++++|++. |++++.+|.+|+||||+|+..+ ..+++.|+..|++.+..|.+|+
T Consensus 149 ~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 149 WKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 99999999999999 8999999999999999999887 4466888999999888877654
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=2.1e-20 Score=172.69 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=114.5
Q ss_pred hcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhc-C
Q 039863 122 LKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKE-D 200 (563)
Q Consensus 122 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-~ 200 (563)
...+..|.||||+||..|+.++|++|++.|++++ .+|..|.||||+|+..|+.++|++|++. +
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 130 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN----------------GLDKAGSTALYWACHGGHKDIVEMLFTQPN 130 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHTTSTT
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCcc----------------ccCCCCCCHHHHHHHcCCHHHHHHHHcCCC
Confidence 3457789999999999999999999999998744 4788999999999999999999999998 8
Q ss_pred CCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccC
Q 039863 201 PNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSK 280 (563)
Q Consensus 201 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~ 280 (563)
.+++ ..|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+ ..++++.|++.
T Consensus 131 ~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~------------~~~~l~~l~~~-- 195 (222)
T 3ehr_A 131 IELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA------------CASLLKKKQGT-- 195 (222)
T ss_dssp CCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHH------------HHHHHC-------
T ss_pred CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchh------------HHHHHHHHhcc--
Confidence 8876 57899999999999999999999999999999999999999999999998 99999999886
Q ss_pred CCCCccCC
Q 039863 281 GTQTTKPD 288 (563)
Q Consensus 281 ~~~~~~~d 288 (563)
+......+
T Consensus 196 ~~~~~~~~ 203 (222)
T 3ehr_A 196 DAVRTLSN 203 (222)
T ss_dssp --------
T ss_pred chhhhccc
Confidence 54444433
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=177.58 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=110.4
Q ss_pred CCCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHc---CChHHHHHHHhcCCCC
Q 039863 241 GPMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHL---GNYYVVKELLKADISA 317 (563)
Q Consensus 241 ~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~ 317 (563)
.....++|+.|+..+....... ++....++ . ........+..|.||||+|+.. |+.+++++|++.|+++
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~-ll~~g~d~-----~--~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv 219 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLE-AFANGQDF-----G--QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 219 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHH-HHHTTCCT-----T--SCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT
T ss_pred cCchHHHHhhhhhccCHHHHHH-HHhcCCcc-----c--ccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC
Confidence 3446789999998885432211 11111111 0 0111112577899999999997 8999999999999988
Q ss_pred CccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCCh
Q 039863 318 AYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNT 397 (563)
Q Consensus 318 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T 397 (563)
+..|..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|+..++.+++++|++. |++ .|+|
T Consensus 220 -n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~---ga~------~g~t 288 (301)
T 2b0o_E 220 -DAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQA---QAG------TFAF 288 (301)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHH---HHH------TTSS
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHh---cCC------CCCC
Confidence 556899999999999999999999999998775 78999999999999999999999999998 555 5899
Q ss_pred HHHHHHHcCC
Q 039863 398 PLLEHAVSGS 407 (563)
Q Consensus 398 pLh~A~~~~~ 407 (563)
|||+|+..|.
T Consensus 289 pLh~A~~~g~ 298 (301)
T 2b0o_E 289 PLHVDYSWVI 298 (301)
T ss_dssp CCC-------
T ss_pred hhHHHHhcCC
Confidence 9999999874
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.80 E-value=1.4e-19 Score=150.22 Aligned_cols=109 Identities=21% Similarity=0.265 Sum_probs=57.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhh
Q 039863 175 EAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFR 254 (563)
Q Consensus 175 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~ 254 (563)
..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++.+++++..+..|+||||+|+..
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 344555555555555555555555555544 2444555555555555555555555555555555555555555555555
Q ss_pred ccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHH
Q 039863 255 EYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLA 298 (563)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A 298 (563)
+ +.+++++|++. +.+++..|..|.||||+|
T Consensus 84 ~------------~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 84 G------------HVSCVKLLLSK--GADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp T------------CHHHHHHHHHT--TCCTTCCCTTSCCHHHHC
T ss_pred C------------CHHHHHHHHHc--CCCCCCcCCCCCCHHHHh
Confidence 5 55555555554 444555555555555554
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=2.9e-19 Score=170.47 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=98.2
Q ss_pred CCHHHHHHHcCChHHHHHHHhcCCCCCc-----cCCCCCChHHHHHHhc---CCHHHHHHHHHhCCCCccccccCCChHH
Q 039863 292 WLPLHLAAHLGNYYVVKELLKADISAAY-----KPDNEGKIPLHLAAGK---GRAYTMQELIRSCPSSCELVDDRGWNVF 363 (563)
Q Consensus 292 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 363 (563)
.++|+.|+..|+.+.+..++..|.+... ..+..|.||||+|+.. |+.+++++|++++.+. +.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence 3578888888888888888887776532 2367788888888887 7888888888887664 66788888888
Q ss_pred HHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCc-hhhhccCcccCc
Q 039863 364 HFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDR 420 (563)
Q Consensus 364 h~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~-~~~~l~~~g~d~ 420 (563)
|+|+..|+.+++++|++. |++++.+|.+|.||||+|+..++. ++++|++.|++.
T Consensus 210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 888888888888888887 788888888888888888888743 557777777653
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=1.8e-18 Score=135.61 Aligned_cols=93 Identities=33% Similarity=0.541 Sum_probs=85.3
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 039863 127 KGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYD 206 (563)
Q Consensus 127 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 206 (563)
+|.||||+||..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|++.++++. .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n----------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~ 63 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN----------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence 48899999999999999999999998854 488899999999999999999999999999987 4
Q ss_pred cCcCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 039863 207 ANEAGETPLYLAAERGYKDVMEDILSTCES 236 (563)
Q Consensus 207 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 236 (563)
.|..|.||||+|+..|+.+++++|++.|++
T Consensus 64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 788999999999999999999999999864
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=1.8e-18 Score=164.86 Aligned_cols=193 Identities=15% Similarity=0.111 Sum_probs=131.3
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 039863 124 ANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNL 203 (563)
Q Consensus 124 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 203 (563)
.|..+.++|+.+...|+..+.+++.......... +-..+....+ ....-..+++.......
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~---------------kP~~~s~~~~----~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV---------------KPNPGSDMIA----RKDYITAKYMERRYARK 122 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC---------------SCCTTCCHHH----HHHHHHHHHTTCTTSCC
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcC---------------CCCCCCCHHH----HHHHHHHHHHHhhcccc
Confidence 5677889999999999988877765433221100 0000111111 11111222333322211
Q ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHhh---ccccchhhhhhcccHHHHHH
Q 039863 204 SYDANEAGETPLYLAAERGYKDVMEDILSTCESPV------DHGPMGRTALHAAAFR---EYTLQTYYYFFRKDREIIKV 274 (563)
Q Consensus 204 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~Lh~A~~~---~~~~~~~~~~~~~~~~~~~~ 274 (563)
.........++|+.|+..|+.+.++.++..|.+++ ..+..|.||||.|+.. + +.+++++
T Consensus 123 ~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~------------~~~~v~~ 190 (278)
T 1dcq_A 123 KHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT------------SLHIVDF 190 (278)
T ss_dssp CSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT------------THHHHHH
T ss_pred cccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccc------------hHHHHHH
Confidence 11122234578999999999999999999998743 3467788888888887 6 7888888
Q ss_pred HHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCC
Q 039863 275 LLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPS 350 (563)
Q Consensus 275 Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 350 (563)
|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++++..
T Consensus 191 Ll~~--ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 191 LVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHH--CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8886 7788888888888888888888888888888888777 55677888888888888888888888877654
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=7.8e-19 Score=173.20 Aligned_cols=150 Identities=16% Similarity=0.086 Sum_probs=99.6
Q ss_pred CCCCCcHHHHHHhh-ccccchhhhhhcccHHHHHHHHhccCCCCCccCC--CCCCCHHHHHHHcCChHHHHHHHhcCCCC
Q 039863 241 GPMGRTALHAAAFR-EYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPD--QQGWLPLHLAAHLGNYYVVKELLKADISA 317 (563)
Q Consensus 241 ~~~g~t~Lh~A~~~-~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 317 (563)
...+.|+||.|+.. + +.++++.|++. +.+++..+ ..|.||||+|+..|+.+++++|++.|+++
T Consensus 196 ~~~~~t~L~~Aa~~~g------------~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv 261 (368)
T 3jue_A 196 SLHPGALLFRASGHPP------------SLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261 (368)
T ss_dssp -CCHHHHHHHHTSSSC------------CHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cCCCCcHHHHHHHccC------------CHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 34556788888877 7 88888888876 77777776 77888888888888888888888888777
Q ss_pred CccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCCh
Q 039863 318 AYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNT 397 (563)
Q Consensus 318 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T 397 (563)
+..|..|.||||+|+..|+.+++++|++++.+. +..|..|+||||+|+..++.+++++|++...........+..+.|
T Consensus 262 -n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t 339 (368)
T 3jue_A 262 -NQADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET 339 (368)
T ss_dssp -TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------
T ss_pred -CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCC
Confidence 456778888888888888888888888887665 667888888888888888888888888764434455556677777
Q ss_pred HHHHHHHcC
Q 039863 398 PLLEHAVSG 406 (563)
Q Consensus 398 pLh~A~~~~ 406 (563)
+|+++....
T Consensus 340 ~l~i~~~~~ 348 (368)
T 3jue_A 340 YLDIFRDFS 348 (368)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777766544
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=2.8e-18 Score=177.98 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=112.9
Q ss_pred CCCHHHHHHHcCChHHHHHHHhcCCCCCcc-----CCCCCChHHHHHHh---cCCHHHHHHHHHhCCCCccccccCCChH
Q 039863 291 GWLPLHLAAHLGNYYVVKELLKADISAAYK-----PDNEGKIPLHLAAG---KGRAYTMQELIRSCPSSCELVDDRGWNV 362 (563)
Q Consensus 291 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 362 (563)
..+.||.|+..|+.+.++.|++.|+++... .+..|.||||+|+. .|+.+++++|++++.+. +.+|..|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 346899999999999999999999887432 27789999999965 99999999999998765 7899999999
Q ss_pred HHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHHHHHHcCCc-hhhhccCcccCccccccCCCCHHHH
Q 039863 363 FHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLLEHAVSGSF-IKSFVCHPKVDRLAFNHQNNSAEDI 433 (563)
Q Consensus 363 Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh~A~~~~~~-~~~~l~~~g~d~~~~n~~g~t~l~~ 433 (563)
||+|+.+|+.+++++|++. |++++.+|..|+||||+|+..++. ++++|+++|++++....++.++..+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~~~~~~~ 279 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVI 279 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHT---CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------------
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcceeeccccC
Confidence 9999999999999999999 899999999999999999999954 6699999999999865554444333
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.1e-18 Score=142.80 Aligned_cols=107 Identities=26% Similarity=0.339 Sum_probs=75.1
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHHHHHcCChHHHHHhhhCCCcccCCCCCCCCCChHHH
Q 039863 321 PDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHFAAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPLL 400 (563)
Q Consensus 321 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLh 400 (563)
+|..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|+..++.+++++|++. |++++.+|..|+||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHH
Confidence 4666777777777777777777777776553 55677777777777777777777777776 6677777777777777
Q ss_pred HHHHcCC-chhhhccCcccCccccccCCCCHH
Q 039863 401 EHAVSGS-FIKSFVCHPKVDRLAFNHQNNSAE 431 (563)
Q Consensus 401 ~A~~~~~-~~~~~l~~~g~d~~~~n~~g~t~l 431 (563)
+|+..+. .++++|+++|+|++.++..|.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 7777763 345777777777777777777763
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=1.5e-17 Score=172.47 Aligned_cols=136 Identities=20% Similarity=0.188 Sum_probs=116.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCccc-----cCcCCCcHHHHHHH---cCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 039863 178 DTALHEAVRYNQVDVVKMLTKEDPNLSYD-----ANEAGETPLYLAAE---RGYKDVMEDILSTCESPVDHGPMGRTALH 249 (563)
Q Consensus 178 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh 249 (563)
.+.||.|+..|+.++|+.|++.|++++.. .+..|.||||+|+. .|+.+++++|+++|++++..+..|+||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 46799999999999999999999987642 27789999999976 89999999999999999999999999999
Q ss_pred HHHhhccccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHH
Q 039863 250 AAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPL 329 (563)
Q Consensus 250 ~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 329 (563)
+|+..| +.+++++|++. +++++..|..|.||||+|+..|+.+++++|++.|+++. .+|+
T Consensus 213 ~A~~~g------------~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-------~~~~ 271 (497)
T 3lvq_E 213 YAALYN------------QPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF-------AFPL 271 (497)
T ss_dssp HHTTTT------------CHHHHHHHHHT--CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------
T ss_pred HHHHcC------------CHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-------CCcc
Confidence 999999 99999999997 99999999999999999999999999999999998873 3688
Q ss_pred HHHHh
Q 039863 330 HLAAG 334 (563)
Q Consensus 330 ~~A~~ 334 (563)
|.+..
T Consensus 272 h~~~~ 276 (497)
T 3lvq_E 272 HVDYS 276 (497)
T ss_dssp -----
T ss_pred eeecc
Confidence 87654
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=1.7e-17 Score=163.57 Aligned_cols=145 Identities=20% Similarity=0.129 Sum_probs=102.3
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHhhccccchhhhhhcccHHHHHHHHhccCCCCCcc
Q 039863 210 AGETPLYLAAER-GYKDVMEDILSTCESPVDHG--PMGRTALHAAAFREYTLQTYYYFFRKDREIIKVLLRSSKGTQTTK 286 (563)
Q Consensus 210 ~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~ 286 (563)
.+.++||.|+.. ++.+++++|++.|++++..+ ..|.||||+|+..+ +.+++++|++. +.+++.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g------------~~~iv~~LL~~--Gadvn~ 263 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN------------SLLACEFLLQN--GANVNQ 263 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTT------------CHHHHHHHHHT--TCCTTC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCC------------CHHHHHHHHHc--CCCCCC
Confidence 455788888888 88888888888888887776 77888888888888 88888888886 788888
Q ss_pred CCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCc--cccccCCChHHH
Q 039863 287 PDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSC--ELVDDRGWNVFH 364 (563)
Q Consensus 287 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~t~Lh 364 (563)
.|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+..+.... ...+..+.|+++
T Consensus 264 ~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 264 ADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342 (368)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH
Confidence 8888888888888888888888888888877 5567888888888888888888888887654322 233455667777
Q ss_pred HHHHc
Q 039863 365 FAAHS 369 (563)
Q Consensus 365 ~A~~~ 369 (563)
++...
T Consensus 343 i~~~~ 347 (368)
T 3jue_A 343 IFRDF 347 (368)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66543
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.73 E-value=4.3e-18 Score=139.34 Aligned_cols=109 Identities=27% Similarity=0.348 Sum_probs=99.4
Q ss_pred cCCCCCCCHHHHHHHcCChHHHHHHHhcCCCCCccCCCCCChHHHHHHhcCCHHHHHHHHHhCCCCccccccCCChHHHH
Q 039863 286 KPDQQGWLPLHLAAHLGNYYVVKELLKADISAAYKPDNEGKIPLHLAAGKGRAYTMQELIRSCPSSCELVDDRGWNVFHF 365 (563)
Q Consensus 286 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 365 (563)
..|.+|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence 46889999999999999999999999999887 566899999999999999999999999998775 7789999999999
Q ss_pred HHHcCChHHHHHhhhCCCcccCCCCCCCCCChHH
Q 039863 366 AAHSGSRRTVEFLLENPSLGNLMNEKNYDGNTPL 399 (563)
Q Consensus 366 A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpL 399 (563)
|+..++.+++++|++. |+++|.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAK---GADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTT---SSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHc---CCCCCcCCccccccc
Confidence 9999999999999999 899999999999983
No 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.73 E-value=3.1e-17 Score=128.51 Aligned_cols=78 Identities=33% Similarity=0.446 Sum_probs=34.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhc
Q 039863 177 KDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFRE 255 (563)
Q Consensus 177 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 255 (563)
|+||||+|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 3444444444444444444444444433 23444444444444444444444444444444444444444444444444
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.64 E-value=8.6e-16 Score=124.30 Aligned_cols=94 Identities=24% Similarity=0.334 Sum_probs=82.1
Q ss_pred hhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 039863 120 LLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKE 199 (563)
Q Consensus 120 ~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 199 (563)
.....+.+|.||||+||..|+.++|++|++.|++.+ .+|..|.||||+|+..|+.+++++|++.
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~----------------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ 79 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA----------------AKDKNGSTPLHLAARNGHLEVVKLLLEA 79 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT----------------CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 345678899999999999999999999999998744 4788999999999999999999999999
Q ss_pred CCCCccccCcCCCcHHHHHHHcCCHHHHHHH
Q 039863 200 DPNLSYDANEAGETPLYLAAERGYKDVMEDI 230 (563)
Q Consensus 200 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 230 (563)
++++. ..|..|.|||++|+..|+.+++++|
T Consensus 80 ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 80 GADVX-AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 99987 4788999999999999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.58 E-value=7.9e-15 Score=118.58 Aligned_cols=93 Identities=24% Similarity=0.345 Sum_probs=83.9
Q ss_pred hccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 039863 170 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALH 249 (563)
Q Consensus 170 l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh 249 (563)
....+.+|.||||+|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 44578889999999999999999999999999887 46889999999999999999999999999999999999999999
Q ss_pred HHHhhccccchhhhhhcccHHHHHHH
Q 039863 250 AAAFREYTLQTYYYFFRKDREIIKVL 275 (563)
Q Consensus 250 ~A~~~~~~~~~~~~~~~~~~~~~~~L 275 (563)
+|+..+ +.+++++|
T Consensus 96 ~A~~~~------------~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNG------------NEDLAEIL 109 (110)
T ss_dssp HHHHHT------------CHHHHHHH
T ss_pred HHHHcC------------CHHHHHHh
Confidence 999999 99999876
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=48.33 E-value=8.9 Score=22.65 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.4
Q ss_pred HHHHHHHcCChhhhhhhhh
Q 039863 32 NLYEAAVEGHVGKFEEHKA 50 (563)
Q Consensus 32 ~L~~Aa~~g~~~~v~~Ll~ 50 (563)
.++.||..|+.+.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 7899999999999987643
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=20.86 E-value=55 Score=31.07 Aligned_cols=265 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hchhhHHHHHHHHHcCChhhhhhhhhc-cccc----cCCCCCceeeeecccCCCCCCCCCCccchhHHHHhhhhccCCCc
Q 039863 25 KNIQLMDNLYEAAVEGHVGKFEEHKAV-LHQI----LTPNENTILHIHITALPNKTMKPNNKANSLWRMISTFKKQSSSD 99 (563)
Q Consensus 25 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-~~~~----~~~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 99 (563)
.+..|.-.|......++.+..+.+++. ..+. .|..|+..+.-... +|
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle--------------------------~~-- 84 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE--------------------------FG-- 84 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH--------------------------HC--
T ss_pred cCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh--------------------------hC--
Q ss_pred hhhhhhhhhHHHHHH--HhCchhhhcccCCCCcHHHHHHHcCcHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccCCCCC
Q 039863 100 DREVIRGENFVRVIL--EMCPILLLKANAKGETLLHIAARHGHYDIVKVLIAECKKPHQNNPEEGVAAARLMLGTTNEAK 177 (563)
Q Consensus 100 ~~~~~~~~~~v~~Ll--~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 177 (563)
..+....|+ -.+.-.--..+..|.-.+..+......+-...+++.-...-. --..|..|
T Consensus 85 ------~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~-------------~L~~d~~G 145 (351)
T 3gvo_A 85 ------SLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVL-------------KCVKDQNG 145 (351)
T ss_dssp ------CHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHH-------------HHHHSTTH
T ss_pred ------CHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHH-------------HHHHhhhh
Q ss_pred CcHHHHHHHcCCHHHHHHHHhc--CCCCccccCcCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhhc
Q 039863 178 DTALHEAVRYNQVDVVKMLTKE--DPNLSYDANEAGETPLYLAAERGYKDVMEDILSTCESPVDHGPMGRTALHAAAFRE 255 (563)
Q Consensus 178 ~t~L~~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 255 (563)
+..+......+..+..+.+++. +.-.....+..|...+..+......+-...+++.
T Consensus 146 n~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~---------------------- 203 (351)
T 3gvo_A 146 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE---------------------- 203 (351)
T ss_dssp HHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH----------------------
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHH----------------------
Q ss_pred cccchhhhhhcccHHHHHHHHhccCCCCCccCCCCCCCHHHHHHHcCChHHHHHHHh--cCCCCCccCCCCCChHHHHHH
Q 039863 256 YTLQTYYYFFRKDREIIKVLLRSSKGTQTTKPDQQGWLPLHLAAHLGNYYVVKELLK--ADISAAYKPDNEGKIPLHLAA 333 (563)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~tpL~~A~ 333 (563)
-.+-+..|+. |.+|.-.+..+...+..+..+.+++ .+.-.....++.|...+..+.
T Consensus 204 ------------l~~~~~~L~~----------d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l 261 (351)
T 3gvo_A 204 ------------LHQHTEQLVQ----------DQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV 261 (351)
T ss_dssp ------------HHTTHHHHHT----------STTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHH
T ss_pred ------------HhhhHHhcCC----------CchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHhCCC---------CccccccCCChHHHHHHHcCChHHHHHhhh
Q 039863 334 GKGRAYTMQELIRSCPS---------SCELVDDRGWNVFHFAAHSGSRRTVEFLLE 380 (563)
Q Consensus 334 ~~g~~~~v~~Ll~~~~~---------~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 380 (563)
..+..+.-+.+++.--. ..-..|..|+-.+..+......+--+.|++
T Consensus 262 ~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~ 317 (351)
T 3gvo_A 262 THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH 317 (351)
T ss_dssp HHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHH
Done!