Your job contains 1 sequence.
>039864
MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ
LGLSSNTFSTSTPTSPSLNNNNPFSRLNNCSNNANNNHVSRHPFAQMSPRVVTNNGYLDF
GKNSPLSNPKPSPFLSFENIRSGSCLVPSVAKNDVGVVDSGGNSSGNDYMEELPFNDYLS
FLDESSKNEDFTDPRSQFSNWGQDLNNGGDVHLQHRRSFSASDACFGTEDAGFNLGYRPC
LYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMDGFYLQQHDEIMRMKAAAHQQR
LAASQFASGVSPPLPYDKCMDFLLRQQNDPQRAAAATLMLNDEFYKFGQGRAERNDFLAM
GLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPE
TVKLILARGNPHFICDSRVLVKPYKEKGKIVEKRQQQFERGNMSPCSSPSGVDSRDPYDL
HLGSKMFTQELMLRRKLEEQAELQQAIELQRRRLMNLQLPNLKNHSVHHHQRSLSMGSPI
TSPACADVNQNVIFPSFVDNSTANNSSNVTTAADQEPQKEVDAACILNNGSNNTKEESSK
TEGSHESSAEILPCKFASMRKSAEGQTPDLPASSEVHGSTAISATSSVSESNADMPNITA
TDVVSY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039864
(666 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006612 - symbol:AT5G12440 species:3702 "Ara... 963 1.4e-112 2
TAIR|locus:2092970 - symbol:AT3G21100 species:3702 "Arabi... 759 9.2e-107 3
TAIR|locus:2083740 - symbol:AT3G51950 species:3702 "Arabi... 520 4.1e-81 4
TAIR|locus:2033882 - symbol:AT1G51520 species:3702 "Arabi... 481 9.1e-73 4
TAIR|locus:2051239 - symbol:AT2G05160 species:3702 "Arabi... 313 6.8e-36 3
TAIR|locus:2085211 - symbol:AT3G52980 species:3702 "Arabi... 239 5.5e-31 3
>TAIR|locus:505006612 [details] [associations]
symbol:AT5G12440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL592312
HOGENOM:HOG000242520 EMBL:AK119121 EMBL:BT002509 IPI:IPI00534948
RefSeq:NP_001190296.1 RefSeq:NP_001190297.1 RefSeq:NP_568277.5
UniGene:At.32141 ProteinModelPortal:Q94CJ8 SMR:Q94CJ8 PRIDE:Q94CJ8
EnsemblPlants:AT5G12440.1 EnsemblPlants:AT5G12440.2
EnsemblPlants:AT5G12440.3 GeneID:831119 KEGG:ath:AT5G12440
TAIR:At5g12440 eggNOG:NOG243110 OMA:YERREMM ProtClustDB:CLSN2927451
Genevestigator:Q94CJ8 Uniprot:Q94CJ8
Length = 650
Score = 963 (344.1 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 231/508 (45%), Positives = 295/508 (58%)
Query: 170 MEELPFNDYLSFLDES-SKNEDFTDPRSQFSNWGQDLNNGGDVHLQHRRSFSASDACFGT 228
+++ ND LSFLD+S SK ED DP ++ G+ HL HRRSFS DA F +
Sbjct: 167 LDDQQLNDCLSFLDDSCSKTEDLVDPSIPLD---YSVDGDGETHL-HRRSFSC-DASFVS 221
Query: 229 EDAGFNLGYRPCLYFARGFCKNGESCKXXXXXXXXXXXXXXXXXXSPNKMDGFYLQQHDE 288
D GF G +PC+YF+RG CKNGESCK SP KM+ F ++QH+E
Sbjct: 222 GDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENF-VRQHEE 280
Query: 289 IMRMKAAAHQQRLAASQFASGVSPPLPYDKCMDFLLRQQNDPQRAAAATLMLNDE-FYKF 347
+MR+K A QQRLA SQ G +P LPY+K MDFLL+Q QR L DE F+
Sbjct: 281 MMRLKLAYQQQRLA-SQIL-GRAPQLPYEKRMDFLLQQH--AQRDGG--LPFGDERFWSS 334
Query: 348 GQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQ 407
GR ER + LAM L ++ SA+RQIYLTFPADSTFKDEDV+ YFS+FG VQDVRIPYQQ
Sbjct: 335 SPGRLERME-LAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQ 393
Query: 408 KRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGKIVEKRQQQF-----ERGN 462
KRMFGFV+F +PETVK++LARGNPHFICDSRVLVKPYKEKGK+++K+QQQ ERGN
Sbjct: 394 KRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGN 453
Query: 463 MSPCSSPSGVDSRDPYDLHLGSKMFTQELMXXXXXXXXXXXXXXXXXXXRRLMNLQLPNL 522
SPCSSPSG+D R+ D HLGSKM + RR +NLQLP
Sbjct: 454 YSPCSSPSGIDPREQSDFHLGSKMLYERREMMRRKIEQADLLRAIELERRRFINLQLPEF 513
Query: 523 KNHSVHHHQRSLSMGSPITSPACADVNQNVIFPSFXXXXXXXXXXXXXXXXXQ-EPQKEV 581
KN +H RS S+GSP + NQ+ P F + P V
Sbjct: 514 KNSVTLNHHRSFSVGSPGYFSSAG--NQS---PDFQSELNGADALKVTDDTLELHPYPVV 568
Query: 582 DAACILNNGSNNTKEESSKTE---GSHESSAE-ILPCK-FASMRKSAEGQTPDLPASSEV 636
+ + N+ SN KEE++K+E S+ E +LP F S + + +T D S+E
Sbjct: 569 NPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLFPSASSTDDHKTDD---SAET 625
Query: 637 HGSTAISATSSVSESNADMPNITATDVV 664
+ +S+T+ N P +T +++
Sbjct: 626 NAKVGVSSTNE----NDHEPPVTTNNLM 649
Score = 168 (64.2 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 31/62 (50%), Positives = 47/62 (75%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD DATS+L +I+S++P+ A KI+GY+L+ D +RDL+ LA GPE+++Q+ I + KS
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
>TAIR|locus:2092970 [details] [associations]
symbol:AT3G21100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00541186 RefSeq:NP_001030738.1 UniGene:At.48687
ProteinModelPortal:F4IWD6 SMR:F4IWD6 PRIDE:F4IWD6
EnsemblPlants:AT3G21100.2 GeneID:821662 KEGG:ath:AT3G21100
OMA:HERDEFM Uniprot:F4IWD6
Length = 602
Score = 759 (272.2 bits), Expect = 9.2e-107, Sum P(3) = 9.2e-107
Identities = 181/383 (47%), Positives = 235/383 (61%)
Query: 284 QQHDEIMRMKAAAHQQRLAASQFASGVSPPLPYDKCMDFLLRQQNDPQRAAAATLMLNDE 343
+Q +EI+RMK A +QR+AA+Q+ + P+ Y+K ++FLL Q+N R+ A +E
Sbjct: 236 RQQEEIVRMKMA-QRQRMAAAQYLAATGSPMSYEKGLNFLLHQRN-AHRSGAG--QFGEE 291
Query: 344 FYKFGQ-GRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVR 402
Y FG GR ER++F+ MG +K SA++QIYLTFPADS+F DEDVSNYF FGPVQDVR
Sbjct: 292 GYWFGSPGRHERDEFMGMG--DKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVR 349
Query: 403 IPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGKIVEKRQQQ----- 457
IPYQQKRMFGFVTF++ ETV++ILARGNPHFICDSRVLVKPYKEKG+I+EKRQQQ
Sbjct: 350 IPYQQKRMFGFVTFLHSETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQ 409
Query: 458 FERGNMSPCSSPSGVDSRDPYDLHLGSKMF--TQELMXXXXXXXXXXXXXXXXXXXRRLM 515
ERGN SP SSPSG+DSRD +D HL +MF TQE+M RR +
Sbjct: 410 MERGNFSPGSSPSGMDSRDLFDSHLAPRMFSNTQEMMRRKAEQADLQQAIEFQR--RRFL 467
Query: 516 NLQLPNLKNHSVHHHQRSLSMGSPIT-SPACADVNQNVIFPSFXXXXXXXXXXXXXXXXX 574
+LQLP++ + S HHQRSLS+GSP+ SP VNQ+++F S
Sbjct: 468 SLQLPDMDSESFLHHQRSLSIGSPVHFSPR---VNQSMLFRSESTSDEVFEGNGDSGH-- 522
Query: 575 QEPQKEVDAACILNNGSNNTKEE---SSKTEGSHESSAEILPCKF-ASMRKSAEGQTPDL 630
Q E A + + G N ++E S +G S LP F AS K+ E Q P+
Sbjct: 523 ---QSEATRAFLSDTGHNISQERGYNSHLNKGQETSLENTLPDSFFASPSKTGETQHPEF 579
Query: 631 PASS--EVHGSTAISATSSVSES 651
+ + +T A SS+ +
Sbjct: 580 EKENCATISVTTENKAASSLQSA 602
Score = 185 (70.2 bits), Expect = 9.2e-107, Sum P(3) = 9.2e-107
Identities = 35/62 (56%), Positives = 51/62 (82%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD D TSILF +I++++P+ ASKI+GY+L+QD+ + DL+RLA GPETL+Q++ +AKS
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
Score = 146 (56.5 bits), Expect = 9.2e-107, Sum P(3) = 9.2e-107
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 169 YMEELPFNDYLSFLDESS-KNEDFT-DPRSQFSNWGQDLNNGGDVHLQHRRSFSASDACF 226
+++E +YLSFL+ESS KN D + DP +G +NG D HL H+RSFSASDACF
Sbjct: 147 FLDEQQLGNYLSFLNESSSKNNDESLDP------FGFSADNG-DAHL-HKRSFSASDACF 198
Query: 227 GTEDAGFNLG-YRPCLYFARG 246
G+E+ GF G Y L+ G
Sbjct: 199 GSEEPGFGGGGYNRFLHGGLG 219
>TAIR|locus:2083740 [details] [associations]
symbol:AT3G51950 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0090305
EMBL:AL049711 GO:GO:0004518 HOGENOM:HOG000242520 EMBL:AY080846
EMBL:AY150500 EMBL:AK316715 EMBL:AY088484 IPI:IPI00523195
PIR:T49074 RefSeq:NP_001030840.1 RefSeq:NP_190763.1
UniGene:At.43143 ProteinModelPortal:Q9SV09 SMR:Q9SV09 STRING:Q9SV09
PaxDb:Q9SV09 PRIDE:Q9SV09 EnsemblPlants:AT3G51950.1
EnsemblPlants:AT3G51950.2 GeneID:824358 KEGG:ath:AT3G51950
TAIR:At3g51950 eggNOG:NOG276617 InParanoid:Q9SV09 OMA:NQTTERE
PhylomeDB:Q9SV09 ProtClustDB:CLSN2684736 Genevestigator:Q9SV09
Uniprot:Q9SV09
Length = 540
Score = 520 (188.1 bits), Expect = 4.1e-81, Sum P(4) = 4.1e-81
Identities = 120/204 (58%), Positives = 139/204 (68%)
Query: 326 QQNDPQRAAAATLMLNDEFYKFGQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKD 385
QQND QRAAAA LM+ DE K G+ R ER D AM A+RQIYLTFPADS F++
Sbjct: 219 QQNDVQRAAAA-LMIGDELQKLGRWRPERIDLSAMACP-----ASRQIYLTFPADSRFRE 272
Query: 386 EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445
EDVSNYFS FGPVQDVRIPYQQKRMFGFVTFVYPETVK ILA+GNPHF+CDSRVLVKPYK
Sbjct: 273 EDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYK 332
Query: 446 EKGKIVEK-RQQQFERGNMSPCSSPSGVDSRDPYDLHLGSKMF---TQELMXXXXXXXXX 501
EKGK+ +K R Q +SP +G+DS P D+ LG + F TQ+++
Sbjct: 333 EKGKVPDKYRTNQTTERELSP----TGLDS-SPRDV-LGGRGFYNNTQDVLWRSKFEEEI 386
Query: 502 XXXXXXXXXXRRLMNLQLPNLKNH 525
RRLMNLQL ++K H
Sbjct: 387 LELQS-----RRLMNLQLLDVKKH 405
Score = 189 (71.6 bits), Expect = 4.1e-81, Sum P(4) = 4.1e-81
Identities = 35/62 (56%), Positives = 52/62 (83%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD ++AT I+ +RI+S+DPENASKIMG +L+QD E++++RLA GPETL+ ++I +AK +
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
Score = 99 (39.9 bits), Expect = 4.1e-81, Sum P(4) = 4.1e-81
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 227 GTEDAGFNLGYRPCLYFARGFCKNGESCK 255
G D GF G PC YFARGFCKNG SC+
Sbjct: 143 GDSDLGF--GGVPCSYFARGFCKNGASCR 169
Score = 47 (21.6 bits), Expect = 4.1e-81, Sum P(4) = 4.1e-81
Identities = 37/151 (24%), Positives = 55/151 (36%)
Query: 512 RRLMNLQLPNLKNHSVHHHQRSLSMGSPITSPACADVNQNVIFPSFXXXXXXXXXXXXXX 571
RRLMNLQL ++K H + SP + +Q++I P
Sbjct: 392 RRLMNLQLLDVKKH--------FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKG 443
Query: 572 XXXQEPQKEVDAACILNNGSNNTKEESSKTEGSHESSAEILPCKFASMRKSAEGQTPDL- 630
+ + D +N + E S + S A L FA SA+ DL
Sbjct: 444 KGSSKEGSDDDT---MNLPE---RLEDSLPDSPFASPAHHL-LLFAD---SADNNGSDLW 493
Query: 631 -PASSEVHGSTAISATSSVSESNADMPNITA 660
P+S ST + + S + N MP + A
Sbjct: 494 SPSSDNDDNSTPSTLSDSFNSFNYQMPRLPA 524
>TAIR|locus:2033882 [details] [associations]
symbol:AT1G51520 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00546547 RefSeq:NP_849792.1 UniGene:At.37800
ProteinModelPortal:F4I9J8 SMR:F4I9J8 PRIDE:F4I9J8
EnsemblPlants:AT1G51520.2 GeneID:841577 KEGG:ath:AT1G51520
OMA:GRHERED PhylomeDB:F4I9J8 Uniprot:F4I9J8
Length = 513
Score = 481 (174.4 bits), Expect = 9.1e-73, Sum P(4) = 9.1e-73
Identities = 106/201 (52%), Positives = 136/201 (67%)
Query: 307 ASGV-SPPLPYDKCMDFLLRQQNDPQRA-AAATLML---NDEFYKFGQGR--AERNDFLA 359
+SGV P D ++ ++R + Q++ AA M + ++ G G E ++ +
Sbjct: 195 SSGVFGSPSEMDYMLEGMMRMKLAQQKSMVAAQFMAACGSPMLHRHGSGHFGEECGNYFS 254
Query: 360 MGLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYP 419
G E+ S ++QIYLTFP++S+F DEDVS YF FG V DVRIPYQQ+RM+GFVTF
Sbjct: 255 QGRHEREDSVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKA 314
Query: 420 ETVKLILARGNPHFICDSRVLVKPYKEKGKIVEKRQQQ-----FERGNMSPCSSPSGVDS 474
ETV+ ILARGNPHFICDSRVLVKPYKEKGKI++KRQQQ ERGN SP SSPSG DS
Sbjct: 315 ETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELLERGNYSPSSSPSGKDS 374
Query: 475 RDPYDLHLGSKMF---TQELM 492
R+ Y+ LG +MF TQE++
Sbjct: 375 RELYECRLGPRMFSKKTQEML 395
Score = 161 (61.7 bits), Expect = 9.1e-73, Sum P(4) = 9.1e-73
Identities = 29/62 (46%), Positives = 48/62 (77%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD D TSI+F++I++ + ENAS+++ Y L+QD+++RDL+R+A GP++L+Q +AK
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
Score = 95 (38.5 bits), Expect = 9.1e-73, Sum P(4) = 9.1e-73
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 174 PFNDYLSFLDESSKNEDFTDPRSQFSNWGQDLNNGGDVHLQHRRSFSASDACFGTEDAGF 233
PF + S SS +E + QFSN N+ H+RSFSA+DACF +E+ F
Sbjct: 119 PFRESSSLFASSSGDEQ---QQQQFSNNFLFTNDEDPFANSHKRSFSANDACFESEEPWF 175
Query: 234 NLGYRPCLYFARGFCKNG 251
G C F +G +G
Sbjct: 176 G-GGNGCHQFPQGGLVDG 192
Score = 54 (24.1 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 274 SPNKMDGFYLQQHDEIMRMKAAAHQQRLAASQFASGVSPPL 314
SP++MD Y+ + +MRMK A Q+ + A+QF + P+
Sbjct: 201 SPSEMD--YMLEG--MMRMKLA-QQKSMVAAQFMAACGSPM 236
Score = 38 (18.4 bits), Expect = 9.1e-73, Sum P(4) = 9.1e-73
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 528 HHHQRSLSMGSPITSPACADVNQNVIFPS 556
H +RS S+GSP P N +++F S
Sbjct: 406 HAIERSPSIGSPSHFPP--RFNHSLLFQS 432
>TAIR|locus:2051239 [details] [associations]
symbol:AT2G05160 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0090305 GO:GO:0004518 EMBL:AC007018
EMBL:AY429380 EMBL:AY429381 IPI:IPI00541993 PIR:E84465
RefSeq:NP_178588.1 UniGene:At.41216 ProteinModelPortal:Q9SJ41
SMR:Q9SJ41 EnsemblPlants:AT2G05160.1 GeneID:815064
KEGG:ath:AT2G05160 TAIR:At2g05160 eggNOG:NOG258283
HOGENOM:HOG000242520 InParanoid:Q9SJ41 OMA:WENSTEM PhylomeDB:Q9SJ41
ProtClustDB:CLSN2912923 Genevestigator:Q9SJ41 InterPro:IPR025605
Pfam:PF12872 PROSITE:PS51644 Uniprot:Q9SJ41
Length = 536
Score = 313 (115.2 bits), Expect = 6.8e-36, Sum P(3) = 6.8e-36
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 337 TLMLNDEFYKFGQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFG 396
+++L ++ KF + ERN+ A+ LA +RQIYLTFPA+S+F + DVS YF+ +G
Sbjct: 289 SVILAEDASKFVEYTGERNEHGAI-LA-----GSRQIYLTFPAESSFTEHDVSIYFTSYG 342
Query: 397 PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGK 449
V+DVRIP QQKRM+GFVTF ETVK ILA+GNPHFIC++RVLVKPY+EK +
Sbjct: 343 HVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395
Score = 110 (43.8 bits), Expect = 6.8e-36, Sum P(3) = 6.8e-36
Identities = 23/62 (37%), Positives = 44/62 (70%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILI-QDVKERDLLRLASGPETLMQALIFRAKS 59
M+ ++ +++ RI+ ++PENA+KI GY+L+ Q+ RD++RLA P+++M ++I K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 QL 61
+L
Sbjct: 61 EL 62
Score = 64 (27.6 bits), Expect = 6.8e-36, Sum P(3) = 6.8e-36
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 240 CLYFARGFCKNGESCK 255
C YF +GFCK+G +C+
Sbjct: 162 CHYFNKGFCKHGNNCR 177
>TAIR|locus:2085211 [details] [associations]
symbol:AT3G52980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009505 "plant-type cell wall" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009505 EMBL:AL132969
eggNOG:NOG258283 HOGENOM:HOG000242520 InterPro:IPR025605
Pfam:PF12872 PROSITE:PS51644 IPI:IPI00519582 PIR:T47555
RefSeq:NP_190866.1 UniGene:At.53909 ProteinModelPortal:Q9LF94
SMR:Q9LF94 EnsemblPlants:AT3G52980.1 GeneID:824464
KEGG:ath:AT3G52980 TAIR:At3g52980 InParanoid:Q9LF94 OMA:RYFHGHP
PhylomeDB:Q9LF94 ProtClustDB:CLSN2915555 Genevestigator:Q9LF94
Uniprot:Q9LF94
Length = 381
Score = 239 (89.2 bits), Expect = 5.5e-31, Sum P(3) = 5.5e-31
Identities = 52/92 (56%), Positives = 69/92 (75%)
Query: 337 TLMLNDEFYKFGQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFG 396
+++L ++ KF + ER++ A+ LA +RQ+YLTFPA+S+F + DVSNYFS G
Sbjct: 277 SVILAEDVSKFVEYTGERSEHGAI-LA-----GSRQVYLTFPAESSFTEHDVSNYFSEVG 330
Query: 397 PVQDVRIPYQQKRMFGFVTFVYPETVKLILAR 428
PV+DVRIP QQKRM+GFVTFVY ETVK ILA+
Sbjct: 331 PVEDVRIPCQQKRMYGFVTFVYMETVKRILAK 362
Score = 138 (53.6 bits), Expect = 5.5e-31, Sum P(3) = 5.5e-31
Identities = 27/62 (43%), Positives = 47/62 (75%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILI-QDVKERDLLRLASGPETLMQALIFRAKS 59
M+ +A +++ NRI ++PENASKI+GY+L+ QD +RD++RLA P+++M+++I K
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 60 QL 61
+L
Sbjct: 61 EL 62
Score = 62 (26.9 bits), Expect = 5.5e-31, Sum P(3) = 5.5e-31
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 240 CLYFARGFCKNGESC 254
C YF +GFCK+G +C
Sbjct: 170 CHYFNKGFCKHGNNC 184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 666 545 0.00095 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 611 (65 KB)
Total size of DFA: 297 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.63u 0.13s 42.76t Elapsed: 00:00:08
Total cpu time: 42.64u 0.13s 42.77t Elapsed: 00:00:08
Start: Thu May 9 15:01:13 2013 End: Thu May 9 15:01:21 2013