BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039864
(666 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis
thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 311/704 (44%), Positives = 418/704 (59%), Gaps = 95/704 (13%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD DATS+L +I+S++P+ A KI+GY+L+ D +RDL+ LA GPE+++Q+ I + KS
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 LGLSSNTFSTSTPTSPSLNNNNPFSRLNNCSNNANNNHVSRHPFAQMSPRVVTNNGYLDF 120
LG+ SN +STPTS S LN N S H +NG++DF
Sbjct: 61 LGIFSNNSPSSTPTS--------PSPLNPICRPPLNGRGSSH-----------SNGFMDF 101
Query: 121 GKN---------------------------SPLSNPKPSPFLSFENIRSGSCLVPSVAKN 153
+N SP P PF S ++ ++
Sbjct: 102 RRNSPSSPSSTSPWSFNNCINGNNGNNPHISPKHTPISKPFSSHQS--------NGLSAT 153
Query: 154 DVGVVDSGGNSSGNDYMEELPFNDYLSFLDES-SKNEDFTDPRSQFSNWGQDLNNGGDVH 212
G D+ G G D +++ ND LSFLD+S SK ED DP ++ G+ H
Sbjct: 154 HSGSADAAG---GADLLDDQQLNDCLSFLDDSCSKTEDLVDPSIPLD---YSVDGDGETH 207
Query: 213 LQHRRSFSASDACFGTEDAGFNLGYRPCLYFARGFCKNGESCKFVHGGFGDGGDVNGVIV 272
L HRRSFS DA F + D GF G +PC+YF+RG CKNGESCKF+HGG+ D D NG++
Sbjct: 208 L-HRRSFSC-DASFVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVA 265
Query: 273 GSPNKMDGFYLQQHDEIMRMKAAAHQQRLAASQFASGVSPPLPYDKCMDFLLRQQNDPQR 332
SP KM+ F ++QH+E+MR+K A QQRLA+ G +P LPY+K MDFLL+Q QR
Sbjct: 266 DSPRKMENF-VRQHEEMMRLKLAYQQQRLASQIL--GRAPQLPYEKRMDFLLQQH--AQR 320
Query: 333 AAAATLMLNDE-FYKFGQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDVSNY 391
L DE F+ GR ER + LAM L ++ SA+RQIYLTFPADSTFKDEDV+ Y
Sbjct: 321 DGG--LPFGDERFWSSSPGRLERME-LAMHLGDQSNSASRQIYLTFPADSTFKDEDVATY 377
Query: 392 FSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGKIV 451
FS+FG VQDVRIPYQQKRMFGFV+F +PETVK++LARGNPHFICDSRVLVKPYKEKGK++
Sbjct: 378 FSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVL 437
Query: 452 EKR-----QQQFERGNMSPCSSPSGVDSRDPYDLHLGSKM-FTQELMLRRKLEEQAELQQ 505
+K+ QQQ ERGN SPCSSPSG+D R+ D HLGSKM + + M+RRK+ EQA+L +
Sbjct: 438 DKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHLGSKMLYERREMMRRKI-EQADLLR 496
Query: 506 AIELQRRRLMNLQLPNLKNHSVHHHQRSLSMGSPITSPACADVNQNVIFPSFVDNSTANN 565
AIEL+RRR +NLQLP KN +H RS S+GSP + NQ+ F S ++ + A
Sbjct: 497 AIELERRRFINLQLPEFKNSVTLNHHRSFSVGSPGYFSSAG--NQSPDFQSELNGADALK 554
Query: 566 SSNVTTAADQEPQKEVDAACILNNGSNNTKEESSKTE----GSHESSAEILPCK-FASMR 620
++ T + P V+ + N+ SN KEE++K+E S + +LP F S
Sbjct: 555 VTDDTL--ELHPYPVVNPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLFPSAS 612
Query: 621 KSAEGQTPDLPASSEVHGSTAISATSSVSESNADMPNITATDVV 664
+ + +T D S+E + +S+T+ N P +T +++
Sbjct: 613 STDDHKTDD---SAETNAKVGVSSTN----ENDHEPPVTTNNLM 649
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa
subsp. japonica GN=Os07g0682400 PE=2 SV=1
Length = 682
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 281/694 (40%), Positives = 385/694 (55%), Gaps = 106/694 (15%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD ++AT ++F+RI+++DP++A+KIMG++LIQD E++++RLA GPE L+ ++ +A+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 LGLSSNTFSTSTPTS---PSLNNNNPFSRLNNCSNNANNNHVSRHPFAQMSPRVVTNNGY 117
LGL + TPTS + ++PF + N+ P +
Sbjct: 61 LGLLPAS-GPGTPTSVAAAAAAAHSPF-----MLSRQNSGRCGTAPSPLSVSSPSSWAPP 114
Query: 118 LDFGKNSPLSNPKPSPFLSFENIRSGSCLVPSVAKNDVGVVDSGGNSS----GNDYMEEL 173
F +N+ +SN +G +V + + + GG S G+ M+EL
Sbjct: 115 PVFSRNNSISN------------GAGEEMV-GLGDELISPANGGGPPSPFFGGDPLMDEL 161
Query: 174 PFNDYLSFLDESSKNEDFTDPRSQFSNWGQDLNNGGDVHL------------QHRRSFSA 221
D L+FL+E P F GGD L HRRS S
Sbjct: 162 QLQDQLAFLNEGGVPAGHQMP--MFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASV 219
Query: 222 SDACFGTEDAGFNLGYRPCLYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMDGF 281
S+ C G D LG++PCLY+ARG+CKNG +C+FVHGG D D G KMD
Sbjct: 220 SELCLGGADG---LGWKPCLYYARGYCKNGSACRFVHGGLPD--DAAG-------KMDPS 267
Query: 282 YLQQH--DEIMRMKAAAHQQRLAASQFASGVSPPLP-----YDKCMDFLLRQQ---NDPQ 331
++Q D ++R K+ QRLAA+ F + LP KC+ LL+QQ N+ Q
Sbjct: 268 AVEQQCQDFLIRSKS----QRLAAAAFPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQ 323
Query: 332 RAAAAT-LMLN-DEFYKF-GQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDV 388
RAAAA LML DE +KF G+ R ER DF +M + +RQIYLTFPADSTF++EDV
Sbjct: 324 RAAAAAALMLGGDEAHKFMGRPRLERADFASM-----MNPGSRQIYLTFPADSTFREEDV 378
Query: 389 SNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKG 448
SNYFSI+GPV DVRIPYQQKRMFGFVTFVYPETVKLILA+GNPHFICD+RVLVKPYKEKG
Sbjct: 379 SNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKG 438
Query: 449 KIVEKRQQQF---ERGNMSPCSSPSGVDSRDPYDLH-LGSKMFTQ-----ELMLRRK--- 496
K+ +K ++Q ER + S C++P+G+D+RDP+D+H LG++M E++LRRK
Sbjct: 439 KVPDKYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEE 498
Query: 497 LEEQAELQQAIELQRRRLMNLQLPNLKNHSVHHHQRSLSMGSPITSP-ACADVNQNVIFP 555
++ AELQQAIEL RRLM LQL + K+ R+ + +PI +P + + N
Sbjct: 499 QQQAAELQQAIELHSRRLMGLQLLDFKS-------RAAAAPTPIGNPFSASQTAANATGE 551
Query: 556 SFVDNSTANNSSNVTTAADQEPQKEVDAACILNNGSNNTKEESSKTEGSHESSAEILP-C 614
S D+ S A +K V+ A + +T E SS S +S LP
Sbjct: 552 SPPDSGELGKGSGFLLAH----KKAVNGA----DKEESTGESSSPNTDSDQSVEHNLPDS 603
Query: 615 KFASMRKSAE-GQTPDLPASSEVH--GSTAISAT 645
FAS KSA + P P +E+ ST SAT
Sbjct: 604 PFASPTKSAGFARDPFAPTEAEISATASTGCSAT 637
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa
subsp. japonica GN=Os03g0328900 PE=2 SV=2
Length = 688
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 246/577 (42%), Positives = 342/577 (59%), Gaps = 104/577 (18%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD ++AT ++F+RI+++DP++A+KIMG +LIQD +++++RLA GPE L+ +++ +A+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LGL--SSNTFSTSTPTSPSLNNNNPFSRLNNCSNNANNNHVSRHP----FAQMSPRVVTN 114
L L S+S+PT P+ ++ SR N+ A + +AQ P +
Sbjct: 61 LALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQP-FSRS 119
Query: 115 NGYLDFGKNSPLSNPKPSPFLSFENIRSGSCLVPSVAKNDVGVVDSGGNSS--------- 165
NG +D E + +G L+ +SGG ++
Sbjct: 120 NGSVD------------------EVVGAGEELISPA--------NSGGGAAANAPPFFPR 153
Query: 166 -GNDYMEELPFNDYLSFLDESSKNE-------DFTDPRSQFSN-------WGQDLNNGGD 210
G+ +++ + L+FL+E N D + RS +G NGG
Sbjct: 154 GGDVLLDDFQLQEQLAFLNEGGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGP 213
Query: 211 VHLQHRRSFSASDACFGTEDA-GFNLGYRPCLYFARGFCKNGESCKFVHGGFGDGGDVNG 269
HRRS S ++ C G + GF G++PCLY+ARGFCKNG SC+FVHG D
Sbjct: 214 ---GHRRSASVNELCLGGGSSDGF--GWKPCLYYARGFCKNGSSCRFVHG------DDAA 262
Query: 270 VIVGSPNKMDGFYLQQH---DEIMRMKAAAHQQRLAASQFASGVSPPLP-----YDKCMD 321
+ G+ MD +Q D ++R K+ QRL + F + LP KC+
Sbjct: 263 ALTGA--AMDAATAEQQQCQDFLLRSKS----QRLGPAAFPYSPTGSLPGSPSAATKCLS 316
Query: 322 FLLRQQ-NDPQRAAAAT-LML--NDEFYKF-GQGRAERNDFLAMGLAEKLTSANRQIYLT 376
LL+QQ ND QRAAAA LML +DE +KF G+ R +R DF +M + +RQIYLT
Sbjct: 317 LLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASM-----MNPGSRQIYLT 371
Query: 377 FPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD 436
FPADSTF++EDVSNYFSI+GPV DVRIPYQQKRMFGFVTFVYPETVKLILA+GNPHFICD
Sbjct: 372 FPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICD 431
Query: 437 SRVLVKPYKEKGKIVEKRQQQFERGNMSPCSSPSGVDSRDPYDLH-LGSKMF-----TQE 490
+RVLVKPYKEKGK+ +K ++ +G+ S C++P+G+D RDP+DLH LG++M T E
Sbjct: 432 ARVLVKPYKEKGKVPDKYRKH--QGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNE 489
Query: 491 LMLRRK---LEEQAELQQAIELQRRRLMNLQLPNLKN 524
+MLRRK ++ AELQQAIEL RRLM+LQL +LKN
Sbjct: 490 MMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKN 526
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa
subsp. japonica GN=Os03g0329200 PE=2 SV=1
Length = 677
Score = 341 bits (875), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 251/674 (37%), Positives = 370/674 (54%), Gaps = 114/674 (16%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD ++AT ++F+RI+++DP++A+KIMG +LIQD +++++RLA GPE L+ +++ +A+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LGL-SSNTFSTSTPTSPSLNNNNPFSRLNN--CSNNANNNHVSRHPFAQMSPRVVTNNGY 117
L L ++S+PT P+ ++ SR N+ C + ++ PF++ + + N G
Sbjct: 61 LALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSRSN--SMGNGGA 118
Query: 118 LDFGKNSPLSNPKPSPFLSFENIRSGSCLVPSVAKNDVGVVDSGG--NSSGNDYMEELPF 175
D E + +G L+ + ++ G+ +++
Sbjct: 119 AD------------------EMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFEL 160
Query: 176 NDYLSFLDESSKNEDFTDPRSQFSN----------------WGQDLNNGGDVHLQHRRSF 219
+ L+FL + + + F +G NGG HRRS
Sbjct: 161 QEQLAFLHDGAGGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGP---GHRRSA 217
Query: 220 SASDACFGTEDAGFNLGYRPCLYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMD 279
S ++ C G G G++PCLY+ARGFCKNG +C+FVHGG D ++
Sbjct: 218 SVNELCLG----GDGFGWKPCLYYARGFCKNGSTCRFVHGGLSDDAAMDATTAEQ----- 268
Query: 280 GFYLQQHDEIMRMKAAAHQQRLAASQFA---SGVSPPLP--YDKCMDFLLRQ---QNDPQ 331
Q D ++R K+ QRL + F +G P P KC+ LL+Q ND Q
Sbjct: 269 ---QQCQDFLLRSKS----QRLGPAAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQ 321
Query: 332 RAAAATLML--NDEFYKF-GQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKDEDV 388
RAAAA LML DE +KF G+ R +R DF +M + +RQIYLTFPADSTF++EDV
Sbjct: 322 RAAAAALMLAGGDEAHKFMGRPRLDRVDFASM-----MNPGSRQIYLTFPADSTFREEDV 376
Query: 389 SNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKG 448
SNYFSI+GPV DVRIPYQQKRMFGFVTFVYPETVKLILA+GNPHFICD+RVLVKPYKEKG
Sbjct: 377 SNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKG 436
Query: 449 KIVEKRQQQFERGNMSPCSSPSGVDSRDPYDLH-LGSKMFTQ-----ELMLRRK---LEE 499
K+ +K ++Q ++G+ C SP+G+D+RDP+D H LG++M ELMLRRK ++
Sbjct: 437 KVPDKYRKQ-QQGDFC-CMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQ 494
Query: 500 QAELQQAIELQRRRLMNLQLPNLKNHSVHHHQRSLSMGSPITSPACADVNQNVIFPSFVD 559
AELQQAI+L RRL+ LQL +LK+ + H + +M P+ +
Sbjct: 495 AAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMS----------------LPTPIT 538
Query: 560 NSTANNSSNVTTAADQEPQK--EVDAAC-------ILNNGSN-NTKEESSKTEGSHESSA 609
N+ + TT + P ++ A+C ++N G+ ++ E ++ S +S
Sbjct: 539 NAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGE 598
Query: 610 EILP-CKFASMRKS 622
LP FAS KS
Sbjct: 599 HNLPDSPFASSTKS 612
>sp|Q9SV09|C3H46_ARATH Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis
thaliana GN=At3g51950 PE=1 SV=1
Length = 540
Score = 323 bits (827), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 224/529 (42%), Positives = 286/529 (54%), Gaps = 128/529 (24%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
MD ++AT I+ +RI+S+DPENASKIMG +L+QD E++++RLA GPETL+ ++I +AK +
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LGLSSNTFSTSTPTSPSLNNNNPFSRLNNCSNNANNNHVSRHPFAQMSPRVVTNNGYLDF 120
LG L NCS R P++ + N
Sbjct: 61 LG------------------------LMNCS---------RSPWSHQDELISPKNN---- 83
Query: 121 GKNSPLSNPKPSPFLSFENIRSGSCLVPSVAKNDVGVVDSGGNSSGNDYMEELPFNDYLS 180
+ S L NP PF + +GG SS + ND+
Sbjct: 84 -RGSSL-NPASLPFYA-----------------------NGGRSSRDLT------NDFEL 112
Query: 181 FLDESSKNEDFTDPRSQFSNWGQDLNNGGDVHLQHRRSFSASDACFGTEDAGFNLGYRPC 240
D +S++ DF G VH + G D GF G PC
Sbjct: 113 MDDMNSRSTDFL----------------GSVHARSGSCVLDGLGYGGDSDLGF--GGVPC 154
Query: 241 LYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMDGFYLQQHDEIMRMKAAAHQQR 300
YFARGFCKNG SC+FVH DGG +VGSP+++ E++R + +
Sbjct: 155 SYFARGFCKNGASCRFVHS---DGG---ADLVGSPSRI---------ELLRSNSVPPR-- 197
Query: 301 LAASQFASGVSPPLPYDKCMDFLLRQQNDPQRAAAATLMLNDEFYKFGQGRAERNDFLAM 360
A F + S P K ++ QQND QRAAAA LM+ DE K G+ R ER D AM
Sbjct: 198 -LAHHFMTRSSLPSFSTKGVNL---QQNDVQRAAAA-LMIGDELQKLGRWRPERIDLSAM 252
Query: 361 GLAEKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPE 420
A+RQIYLTFPADS F++EDVSNYFS FGPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 253 ACP-----ASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPE 307
Query: 421 TVKLILARGNPHFICDSRVLVKPYKEKGKIVEK-RQQQFERGNMSPCSSPSGVDSRDPYD 479
TVK ILA+GNPHF+CDSRVLVKPYKEKGK+ +K R Q + SP+G+DS P D
Sbjct: 308 TVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTEREL----SPTGLDS-SPRD 362
Query: 480 LHLGSKMF---TQELMLRRKLEEQAELQQAIELQRRRLMNLQLPNLKNH 525
+ LG + F TQ+++ R K EE + +ELQ RRLMNLQL ++K H
Sbjct: 363 V-LGGRGFYNNTQDVLWRSKFEE-----EILELQSRRLMNLQLLDVKKH 405
>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa
subsp. japonica GN=Os08g0126700 PE=2 SV=2
Length = 653
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 158/312 (50%), Gaps = 54/312 (17%)
Query: 238 RPCLYFARGFCKNGESCKFVH--------GGFGDGGDV-----NGVIVGSPNKMDGFYLQ 284
RPC YF++G CKNG++C + H G GDV GV GS ++
Sbjct: 264 RPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLE----M 319
Query: 285 QHDEIMRMK-----AAAHQQRLAASQFASGVSPPLPYDKCMDFLLRQQNDPQRAAAATLM 339
+ E++ + + A L ++ G+ + +L Q + + T +
Sbjct: 320 EITELLNSRRGQPVSIASLPTLYGEKYGKGL-------QADGYLTESQRHGKAGYSLTRL 372
Query: 340 LN--DEFYKFGQGRAERNDFLAMGLAEKL----------------TSANRQIYLTFPADS 381
L+ ++ + + + LA A+ + +++ QIYLTFPA+S
Sbjct: 373 LSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAES 432
Query: 382 TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441
TF ++DV+NYF +GPV+DVRIP Q++RMFGFV+F PETV IL R NPHFIC SRVLV
Sbjct: 433 TFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLV 492
Query: 442 KPYKEKGKIVEKRQQQFERGNMSPCSSPSGVDSRDPYDLHLGSKMFTQELMLRRKLEEQA 501
KPY+EK K V+ R +M P P + +D L + + ++R++L E+
Sbjct: 493 KPYREKSKCVD-RTCVDNIKSMVPYCPPRFFE----FDQELYTAEYDASRLMRKQLAEKR 547
Query: 502 ELQQAIELQRRR 513
E+ +E++RRR
Sbjct: 548 EM--LLEMERRR 557
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQ 60
M+ + + F R++ ++PE+ KI G +L+++ E +L++LA GPE + A I K+
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 61 LGL 63
L +
Sbjct: 110 LTV 112
>sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis
thaliana GN=At2g05160 PE=2 SV=1
Length = 536
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 44/244 (18%)
Query: 240 CLYFARGFCKNGESCKFVHG-------GFGDGGDVNGVI-----VGSP---NKMDGFYLQ 284
C YF +GFCK+G +C++ HG F + N + V SP K++G +
Sbjct: 162 CHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEII- 220
Query: 285 QHDEIMRMKAAA----------HQQRLAASQFASG-VSPPLPYDKC----MDFLLRQQND 329
E+++++ A + ++ + A G ++ + K L R +N
Sbjct: 221 ---ELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNT 277
Query: 330 PQRA----AAATLMLNDEFYKFGQGRAERNDFLAMGLAEKLTSANRQIYLTFPADSTFKD 385
+ +++L ++ KF + ERN+ A + + +RQIYLTFPA+S+F +
Sbjct: 278 IRLVDRPHGQHSVILAEDASKFVEYTGERNEHGA------ILAGSRQIYLTFPAESSFTE 331
Query: 386 EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445
DVS YF+ +G V+DVRIP QQKRM+GFVTF ETVK ILA+GNPHFIC++RVLVKPY+
Sbjct: 332 HDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYR 391
Query: 446 EKGK 449
EK +
Sbjct: 392 EKSR 395
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MDEFDATSILFNRIKSIDPENASKIMGYILI-QDVKERDLLRLASGPETLMQALIFRAKS 59
M+ ++ +++ RI+ ++PENA+KI GY+L+ Q+ RD++RLA P+++M ++I K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 QLGLSSNTFST 70
+L +S+ + +
Sbjct: 61 ELARNSHHYHS 71
>sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containing protein 51 OS=Oryza
sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1
Length = 513
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 51/241 (21%)
Query: 241 LYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMDGFYLQQHDEIMRMKAAAHQQR 300
+F RG+CK G +C+F HG + + +P ++ F A+ +
Sbjct: 184 FHFFRGYCKKGVNCQFFHGSVPE--------LHNPRQVHPF------------ASLSKLD 223
Query: 301 LAASQFASGVSPPLPYDKCMDFLLRQQNDPQR---------------AAAATLML----- 340
+ + G+ PP+ D+ + P R + +L++
Sbjct: 224 MEIRELLIGIPPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTI 283
Query: 341 ------NDEFYKFGQGRAERNDFLAMGLAEKLT-----SANRQIYLTFPADSTFKDEDVS 389
+ +++ A + +GLA + + QIY+TFP S F D+DV
Sbjct: 284 RVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVE 343
Query: 390 NYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGK 449
NYF FGPV VRIPYQ+KRMFGFV+F+Y ETV+LIL++G HFIC RVLVK Y EK +
Sbjct: 344 NYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSE 403
Query: 450 I 450
+
Sbjct: 404 L 404
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 382 TFKDEDVSNYFSIFGPVQDVRIPYQQK----RMFGFVTFVYPETVKLILARGNPHFICDS 437
T DE+ YF ++GPV DV I Y Q R FGFV+F + V +L + H +
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGK 178
Query: 438 RVLVK 442
+V VK
Sbjct: 179 QVEVK 183
>sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC2 PE=3 SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 198 FSNWGQDLNNGGDVHLQHRRSFSASDACFGTEDAGFNL-----GYRPCLYFARGFCKNGE 252
F+ W +GGD + A C D+G+ G CLYFARG C G
Sbjct: 87 FNKW-----SGGDKEDEKFNQKKADGRCSIARDSGYTRADKVPGSYFCLYFARGLCTQGH 141
Query: 253 SCKFVH 258
C+F+H
Sbjct: 142 KCEFLH 147
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 386 EDVSNYFSIFGPVQDVRI----PYQQKRMFGFVTFVYPETVKLILARGNPHFI------- 434
E++S YF FG + D + + R FGFVTF P V +L G PH +
Sbjct: 21 ENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG-PHTLDGRTIDP 79
Query: 435 --CDSRVLVKPYKEKGKIV 451
C+ R L KP K G V
Sbjct: 80 KPCNPRTLQKPKKGGGYKV 98
>sp|Q75K81|C3H36_ORYSJ Zinc finger CCCH domain-containing protein 36 OS=Oryza sativa
subsp. japonica GN=Os05g0497500 PE=2 SV=1
Length = 703
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 207 NGGDVHLQHRRSFSASDACFGTEDAGFNLG----YRPCLYFARGFCKNGESCKFVHGGFG 262
+GG V S + S FG+ G ++ R C ++A+G CKNG+SC F+H G
Sbjct: 145 HGGHVSQSPPDSNALSSQRFGSSSPGGDMKNKTRKRTCTFYAQGRCKNGKSCTFLHEGEV 204
Query: 263 DGGD 266
G D
Sbjct: 205 SGSD 208
>sp|Q51TF7|CWC2_MAGO7 Pre-mRNA-splicing factor CWC2 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CWC2 PE=3 SV=2
Length = 394
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 198 FSNWGQDLNNGGDVHLQHRRSFSASDACFGTEDAGFN-----LGYRPCLYFARGFCKNGE 252
++ W +GGD ++ +A C +D+G+ G CL+FARG C G+
Sbjct: 68 YNKW-----SGGDREDKYTSQTAAKGRCNVAKDSGYTKADQTTGSYFCLFFARGVCPKGQ 122
Query: 253 SCKFVH 258
C+++H
Sbjct: 123 DCEYLH 128
>sp|Q84VG7|C3H27_ARATH Zinc finger CCCH domain-containing protein 27 OS=Arabidopsis
thaliana GN=FES1 PE=2 SV=2
Length = 587
Score = 39.7 bits (91), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 239 PCLYFARGFCKNGESCKFVH 258
PC +FA+G+C NG SCKF+H
Sbjct: 101 PCKFFAKGWCFNGVSCKFLH 120
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 39.3 bits (90), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 236 GYRPCLYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMDGFYLQQHDEIMRMKAA 295
G R C Y +RG C GESC ++H GD D+ G+ P MD Q +E MR
Sbjct: 240 GLRFCYYASRGVCFRGESCMYLH---GDICDMCGLQTLHP--MDA---AQREEHMRACIE 291
Query: 296 AHQQRLAAS 304
AH++ + S
Sbjct: 292 AHEKDMELS 300
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 386 EDVSNYFSIFGPVQD---VRIPYQQK-RMFGFVTFVYPETVKLILARGNPHFICDSRVL- 440
+ + +YFS FG +++ +R P ++ R FGFVTF P +V +L G PH DS+ +
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL--GQPHHELDSKTID 92
Query: 441 ---VKPYKEKGKIVEKRQQQFERG 461
P + + K+V + ++ F G
Sbjct: 93 PKVAFPRRAQPKMVTRTKKIFVGG 116
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 386 EDVSNYFSIFGPVQD---VRIPYQQK-RMFGFVTFVYPETVKLILARGNPHFICDSRVL- 440
+ + +YFS FG +++ +R P ++ R FGFVTF P +V +L G PH DS+ +
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL--GQPHHELDSKTID 92
Query: 441 ---VKPYKEKGKIVEKRQQQFERG 461
P + + K+V + ++ F G
Sbjct: 93 PKVAFPRRAQPKMVTRTKKIFVGG 116
>sp|Q4WU07|CWC2_ASPFU Pre-mRNA-splicing factor cwc2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc2 PE=3
SV=1
Length = 414
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 207 NGGDVHLQHRRSFSASDACFGTEDAGFNL-----GYRPCLYFARGFCKNGESCKFVH 258
+GGD ++ +A C +D+G+ G CL+FARG C G C+++H
Sbjct: 97 SGGDREDKYLSKHAAPSRCNIAKDSGYTRADKVPGSYFCLFFARGVCPKGHECEYLH 153
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 240 CLYFARGFCKNGESCKFVHGGFGDGGDVNGVIVGSPNKMDGFYLQQHDEIMRMKAAAHQQ 299
C Y A G C+ GE+C ++H GD D+ G+ V P MD QH ++ AH++
Sbjct: 214 CPYAAVGECRYGENCVYLH---GDSCDMCGLQVLHP--MDAAQRSQH---IKSCIEAHEK 265
Query: 300 RLAASQFASGVSPPLPYDKCMDFLLRQQNDPQR 332
+ S FA S + CM+ + + N +R
Sbjct: 266 DMELS-FAVQRSKDMVCGICMEVVYEKANPSER 297
>sp|Q5BB35|CWC2_EMENI Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc2
PE=3 SV=1
Length = 417
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 198 FSNWGQDLNNGGDVHLQHRRSFSASDACFGTEDAGFNL-----GYRPCLYFARGFCKNGE 252
++ W +GGD ++ +A C D+G+ G CL+FARG C G
Sbjct: 98 YNKW-----SGGDREDKYLSKTAAPSRCNIARDSGYTRADKVRGSYFCLFFARGICPKGH 152
Query: 253 SCKFVH 258
C+++H
Sbjct: 153 ECEYLH 158
>sp|Q6C908|PAN1_YARLI Actin cytoskeleton-regulatory complex protein PAN1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAN1 PE=3 SV=1
Length = 1634
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 63 LSSNTFSTSTPTSPSLNNNNPFSRLNNCSNNANNNHVSRHPFAQMSPRVVTNNGYLDFGK 122
++++T S + PT P+ ++NNPF RLNN + A + NN +L G
Sbjct: 1240 VATSTPSPAAPTVPAADDNNPFHRLNNGGDAAAAAPAAGG---------EDNNPFLRPGT 1290
Query: 123 NSPLSNPKPSPF 134
N P++ P P+ F
Sbjct: 1291 NQPIAAPSPASF 1302
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 201 WGQDLNNGGDVHLQHRRS---FSASDACFGTEDAGFNLGYRPC-LYFARGFCKNGESCKF 256
WG N D+ L +R F + C E+ + G PC LY G C NG+ C F
Sbjct: 405 WGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMF 464
Query: 257 VH 258
H
Sbjct: 465 SH 466
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 200 NWGQDLNNGGDVHLQHRR---SFSASDACFGTEDAGFNLGYRPC-LYFARGFCKNGESCK 255
WG N D+ L +R F + C E+ + G PC LY G C NG+ C
Sbjct: 405 TWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCM 464
Query: 256 FVH 258
F H
Sbjct: 465 FSH 467
>sp|Q6T412|CWC2_LEPMC Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans GN=CWC2
PE=3 SV=1
Length = 421
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 207 NGGDVHLQHRRSFSASDACFGTEDAGFNL-----GYRPCLYFARGFCKNGESCKFVH 258
+GGD ++ +A C D+G+ G CL+FARG C G C+++H
Sbjct: 94 SGGDREDKYLSQTAAQGRCNVARDSGYTKADKTPGSYFCLFFARGICPKGVDCEYLH 150
>sp|P27470|GTF2_STRDO Glucosyltransferase-I OS=Streptococcus downei PE=3 SV=1
Length = 1592
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 535 SMGSPITSPACADVNQNVIFPSFVDNSTANNSSNVTTAADQEPQKEVDAACILNNGSNNT 594
S+ S T A D NQ V+ N+ A + +++ A E DAA + + T
Sbjct: 34 SVASADTDTASDDSNQTVVTGDQTTNNQATDQTSIAATATSEQSASTDAATDQASAAEQT 93
Query: 595 KEESSKTEGSHESSAEILPCKFASMRKSAEGQTPDLPASSEVHGSTAISATSSVSESNAD 654
+ ++ T+ + +++ K+ +G T ++ A ++ + A + + S+ A
Sbjct: 94 QGTTASTDTAAQTTTNANEAKWVPTENENQGFTDEMLAEAK---NVATAESDSIPSDLAK 150
Query: 655 MPNITATD 662
M N+ D
Sbjct: 151 MSNVKQVD 158
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 385 DEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLIL 426
+E + YF FG ++++ +P ++R F F+T+ E VK +L
Sbjct: 246 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 291
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 385 DEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLIL 426
+E + YF FG ++++ +P ++R F F+T+ E VK +L
Sbjct: 128 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 173
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 385 DEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLIL 426
+E + YF FG ++++ +P ++R F F+T+ E VK +L
Sbjct: 149 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 194
>sp|Q8N3V7|SYNPO_HUMAN Synaptopodin OS=Homo sapiens GN=SYNPO PE=1 SV=2
Length = 929
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 487 FTQELMLRRKLEEQAELQQAIELQRRRLMNLQLPNLKNHSVHHHQ-RSLSMGSPITSPA- 544
+++E L R LE+ A ++ + L N L L + +H Q R SP PA
Sbjct: 248 YSEEASLLRHLEKVASEEEEVPLVVYLKENAAL--LTANGLHLSQNREAQQSSPAPPPAE 305
Query: 545 ----CADVNQNVIFPSFVDNSTANNSSNVTTAAD---QEPQKEVDAACILNNGSNNTKEE 597
ADVNQN+ PS + +NSS+ A D P V + L++ N+ E
Sbjct: 306 VHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQNSSEA 365
Query: 598 SSKTEGSHESSAEILPCKFASMRKSAEGQTPDLPASSEVHGSTAI 642
+ G+ +S C A+GQ P PA EV ST +
Sbjct: 366 QLPSNGTGPASKPSTLC--------ADGQ-PQAPA-EEVRCSTLL 400
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 385 DEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLIL 426
+E + YF FG ++++ +P ++R F F+T+ E VK +L
Sbjct: 127 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 172
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 385 DEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLIL 426
+E + YF FG ++++ +P ++R F FVT+ E VK +L
Sbjct: 124 EEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL 169
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 385 DEDVSNYFSIFGPVQDVRIPY----QQKRMFGFVTFVYPETVKLIL 426
+E + YF FG ++++ +P ++R F FVT+ E VK +L
Sbjct: 124 EEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLL 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,700,448
Number of Sequences: 539616
Number of extensions: 11499976
Number of successful extensions: 73017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 50254
Number of HSP's gapped (non-prelim): 16105
length of query: 666
length of database: 191,569,459
effective HSP length: 124
effective length of query: 542
effective length of database: 124,657,075
effective search space: 67564134650
effective search space used: 67564134650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)