Query 039864
Match_columns 666
No_of_seqs 353 out of 1336
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 02:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 2.2E-15 4.8E-20 142.6 11.4 85 365-450 29-117 (144)
2 KOG0149 Predicted RNA-binding 99.5 1.2E-14 2.7E-19 146.7 7.1 78 366-445 8-89 (247)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 7.9E-14 1.7E-18 145.4 10.7 81 368-449 267-351 (352)
4 KOG0125 Ataxin 2-binding prote 99.5 3.4E-14 7.4E-19 148.8 7.5 81 367-448 93-175 (376)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.5E-13 5.4E-18 141.6 10.5 79 370-449 3-85 (352)
6 PF00076 RRM_1: RNA recognitio 99.4 6.9E-13 1.5E-17 106.3 8.1 67 373-440 1-70 (70)
7 TIGR01659 sex-lethal sex-letha 99.4 7.2E-13 1.6E-17 141.8 9.9 81 367-448 104-188 (346)
8 PLN03120 nucleic acid binding 99.4 1.1E-12 2.3E-17 135.4 10.6 75 370-446 4-79 (260)
9 TIGR01645 half-pint poly-U bin 99.4 6.4E-12 1.4E-16 142.8 14.6 77 368-445 105-185 (612)
10 TIGR01628 PABP-1234 polyadenyl 99.3 4.7E-12 1E-16 141.5 11.2 87 367-454 282-371 (562)
11 TIGR01659 sex-lethal sex-letha 99.3 8.2E-12 1.8E-16 133.8 9.9 83 368-451 191-279 (346)
12 PLN03121 nucleic acid binding 99.3 2.4E-11 5.2E-16 124.2 10.3 77 368-446 3-80 (243)
13 PF14259 RRM_6: RNA recognitio 99.2 2.9E-11 6.3E-16 98.6 8.2 67 373-440 1-70 (70)
14 KOG0153 Predicted RNA-binding 99.2 3E-11 6.5E-16 127.7 10.4 78 366-446 224-302 (377)
15 TIGR01645 half-pint poly-U bin 99.2 2.8E-11 6.1E-16 137.6 10.5 78 369-447 203-284 (612)
16 smart00362 RRM_2 RNA recogniti 99.2 6.4E-11 1.4E-15 92.6 9.3 70 372-442 1-72 (72)
17 COG0724 RNA-binding proteins ( 99.2 5.2E-11 1.1E-15 113.4 9.8 76 370-446 115-194 (306)
18 PLN03213 repressor of silencin 99.2 3E-11 6.4E-16 132.0 8.9 78 369-447 9-88 (759)
19 KOG0148 Apoptosis-promoting RN 99.2 2E-11 4.3E-16 125.8 6.8 78 370-448 62-143 (321)
20 KOG0111 Cyclophilin-type pepti 99.2 1.3E-11 2.8E-16 124.3 4.6 80 368-448 8-91 (298)
21 TIGR01648 hnRNP-R-Q heterogene 99.2 6.5E-11 1.4E-15 134.1 10.1 78 367-445 55-136 (578)
22 TIGR01628 PABP-1234 polyadenyl 99.2 6.7E-11 1.4E-15 132.3 10.1 74 372-446 2-79 (562)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.2E-10 2.5E-15 127.9 10.9 79 368-447 293-375 (509)
24 TIGR01622 SF-CC1 splicing fact 99.2 1.2E-10 2.7E-15 126.2 10.8 78 368-446 184-265 (457)
25 smart00360 RRM RNA recognition 99.2 1.7E-10 3.8E-15 89.7 8.5 65 378-442 3-71 (71)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.6E-10 3.4E-15 128.0 10.9 79 367-447 272-351 (481)
27 TIGR01622 SF-CC1 splicing fact 99.1 1.5E-10 3.3E-15 125.5 10.6 79 367-447 86-168 (457)
28 KOG0122 Translation initiation 99.1 1.1E-10 2.5E-15 118.9 8.9 78 369-447 188-269 (270)
29 TIGR01648 hnRNP-R-Q heterogene 99.1 1.9E-10 4.1E-15 130.4 10.2 77 368-449 231-309 (578)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.2E-10 4.8E-15 126.9 10.3 75 370-447 2-78 (481)
31 KOG0144 RNA-binding protein CU 99.1 7.4E-11 1.6E-15 127.5 6.2 86 368-454 122-213 (510)
32 KOG4205 RNA-binding protein mu 99.1 4.2E-11 9.2E-16 126.7 4.1 80 369-450 5-88 (311)
33 KOG0113 U1 small nuclear ribon 99.1 2.3E-10 4.9E-15 119.3 9.0 79 367-446 98-180 (335)
34 KOG0148 Apoptosis-promoting RN 99.1 2.7E-10 5.9E-15 117.6 9.1 84 365-451 159-242 (321)
35 KOG0107 Alternative splicing f 99.1 2.2E-10 4.8E-15 112.2 7.8 78 369-448 9-86 (195)
36 cd00590 RRM RRM (RNA recogniti 99.1 7.6E-10 1.6E-14 87.0 9.5 71 372-443 1-74 (74)
37 KOG4207 Predicted splicing fac 99.1 1.4E-10 3.1E-15 116.0 6.5 78 368-446 11-92 (256)
38 PF13893 RRM_5: RNA recognitio 99.1 4.1E-10 8.8E-15 89.2 7.4 56 388-444 1-56 (56)
39 smart00361 RRM_1 RNA recogniti 99.1 4.9E-10 1.1E-14 93.2 7.6 57 385-441 2-69 (70)
40 KOG0108 mRNA cleavage and poly 99.0 2.4E-09 5.3E-14 117.9 10.3 85 366-451 13-102 (435)
41 KOG4205 RNA-binding protein mu 98.9 5.7E-10 1.2E-14 118.3 4.7 84 369-454 96-183 (311)
42 KOG0131 Splicing factor 3b, su 98.9 7.7E-10 1.7E-14 109.0 5.0 76 369-445 8-87 (203)
43 KOG0126 Predicted RNA-binding 98.9 2.6E-10 5.7E-15 112.3 1.7 75 368-443 33-111 (219)
44 KOG0121 Nuclear cap-binding pr 98.9 2.2E-09 4.7E-14 101.1 6.2 79 365-444 31-113 (153)
45 KOG0109 RNA-binding protein LA 98.9 1.5E-09 3.3E-14 113.0 5.3 74 371-449 3-76 (346)
46 KOG0147 Transcriptional coacti 98.8 3.6E-09 7.8E-14 117.3 5.9 78 373-451 281-362 (549)
47 KOG0127 Nucleolar protein fibr 98.8 7.9E-09 1.7E-13 114.6 8.2 82 370-452 117-201 (678)
48 KOG0145 RNA-binding protein EL 98.8 1.1E-08 2.5E-13 105.4 8.4 80 369-449 40-123 (360)
49 KOG0114 Predicted RNA-binding 98.8 2.1E-08 4.6E-13 91.6 8.2 78 368-446 16-94 (124)
50 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.8E-08 3.9E-13 110.8 9.4 77 365-445 170-258 (509)
51 KOG0117 Heterogeneous nuclear 98.8 1.7E-08 3.8E-13 109.9 8.7 78 365-443 78-160 (506)
52 KOG0124 Polypyrimidine tract-b 98.8 4.3E-09 9.3E-14 112.2 4.0 74 370-444 113-190 (544)
53 KOG0145 RNA-binding protein EL 98.7 3.1E-08 6.7E-13 102.3 8.7 75 371-446 279-357 (360)
54 KOG0123 Polyadenylate-binding 98.7 2E-08 4.4E-13 108.8 7.7 77 373-451 79-157 (369)
55 KOG0144 RNA-binding protein CU 98.7 2.8E-08 6.1E-13 108.0 7.2 83 365-448 29-118 (510)
56 KOG0127 Nucleolar protein fibr 98.6 3.3E-08 7.1E-13 109.8 6.6 78 371-449 6-87 (678)
57 KOG0117 Heterogeneous nuclear 98.6 5.6E-08 1.2E-12 106.0 8.2 80 367-451 256-335 (506)
58 KOG0132 RNA polymerase II C-te 98.6 4E-08 8.8E-13 112.4 7.2 85 364-451 415-499 (894)
59 KOG0105 Alternative splicing f 98.6 5E-08 1.1E-12 96.7 6.7 79 368-447 4-83 (241)
60 KOG0131 Splicing factor 3b, su 98.5 1.1E-07 2.3E-12 94.1 4.5 84 365-449 91-179 (203)
61 KOG0130 RNA-binding protein RB 98.5 2E-07 4.3E-12 88.8 5.5 77 371-448 73-153 (170)
62 KOG4206 Spliceosomal protein s 98.5 3.6E-07 7.8E-12 92.7 7.4 84 369-453 8-96 (221)
63 KOG4212 RNA-binding protein hn 98.4 3.9E-07 8.5E-12 99.4 7.8 81 364-445 38-122 (608)
64 KOG0110 RNA-binding protein (R 98.4 9.5E-08 2.1E-12 108.7 2.5 79 370-449 613-695 (725)
65 KOG0146 RNA-binding protein ET 98.4 3.2E-07 7E-12 95.2 4.5 80 368-448 283-366 (371)
66 KOG0123 Polyadenylate-binding 98.4 4.6E-07 1E-11 98.4 5.7 83 367-450 267-352 (369)
67 KOG0110 RNA-binding protein (R 98.3 8.2E-07 1.8E-11 101.3 7.8 72 373-445 518-596 (725)
68 KOG4661 Hsp27-ERE-TATA-binding 98.3 5.9E-07 1.3E-11 100.2 6.5 77 368-445 403-483 (940)
69 KOG0109 RNA-binding protein LA 98.3 8.4E-07 1.8E-11 93.0 5.5 77 367-448 75-151 (346)
70 KOG0146 RNA-binding protein ET 98.3 1.8E-06 4E-11 89.7 7.2 85 369-454 18-108 (371)
71 KOG0124 Polypyrimidine tract-b 98.2 2.7E-06 5.9E-11 91.3 6.1 77 368-445 208-288 (544)
72 KOG4208 Nucleolar RNA-binding 98.1 4.3E-06 9.4E-11 84.2 6.8 75 372-447 51-130 (214)
73 KOG0116 RasGAP SH3 binding pro 98.1 4.8E-06 1E-10 91.9 7.4 74 371-446 289-366 (419)
74 KOG0415 Predicted peptidyl pro 98.1 4.5E-06 9.6E-11 89.5 6.3 81 368-449 237-321 (479)
75 KOG4212 RNA-binding protein hn 98.1 6.4E-06 1.4E-10 90.2 6.7 76 365-443 531-607 (608)
76 KOG4454 RNA binding protein (R 98.0 4.3E-06 9.4E-11 85.0 4.7 79 365-445 4-85 (267)
77 KOG0151 Predicted splicing reg 98.0 1E-05 2.2E-10 92.5 7.3 81 365-446 169-256 (877)
78 KOG0106 Alternative splicing f 98.0 5.6E-06 1.2E-10 84.2 4.2 71 371-446 2-72 (216)
79 KOG0533 RRM motif-containing p 97.8 4.3E-05 9.3E-10 79.2 7.9 80 365-445 78-160 (243)
80 KOG4209 Splicing factor RNPS1, 97.7 4E-05 8.6E-10 78.8 5.6 79 367-447 98-180 (231)
81 KOG0226 RNA-binding proteins [ 97.6 3.9E-05 8.5E-10 79.6 4.0 77 371-448 191-271 (290)
82 KOG2135 Proteins containing th 97.5 4.2E-05 9E-10 84.6 1.5 82 364-448 366-447 (526)
83 KOG4211 Splicing factor hnRNP- 97.4 0.0011 2.4E-08 74.0 11.4 68 378-447 17-86 (510)
84 KOG1548 Transcription elongati 97.4 0.0012 2.6E-08 71.1 10.8 78 367-445 131-219 (382)
85 KOG4660 Protein Mei2, essentia 97.3 0.00014 3.1E-09 81.7 3.1 73 366-440 71-143 (549)
86 PF00642 zf-CCCH: Zinc finger 97.3 6.3E-05 1.4E-09 52.9 0.0 23 237-259 3-26 (27)
87 KOG0106 Alternative splicing f 96.8 0.00071 1.5E-08 69.2 3.0 71 369-444 98-168 (216)
88 smart00356 ZnF_C3H1 zinc finge 96.8 0.00061 1.3E-08 46.7 1.6 22 238-259 5-26 (27)
89 KOG1190 Polypyrimidine tract-b 96.8 0.0035 7.6E-08 68.9 8.0 75 370-445 297-371 (492)
90 KOG1457 RNA binding protein (c 96.7 0.0054 1.2E-07 63.3 7.6 85 369-454 33-125 (284)
91 KOG0147 Transcriptional coacti 96.6 0.0021 4.5E-08 72.6 4.7 74 370-445 179-256 (549)
92 PF04059 RRM_2: RNA recognitio 96.6 0.01 2.2E-07 54.0 8.0 77 371-448 2-88 (97)
93 KOG4210 Nuclear localization s 96.5 0.0014 3.1E-08 69.4 2.7 81 368-449 182-266 (285)
94 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0078 1.7E-07 48.6 5.5 52 371-426 2-53 (53)
95 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.011 2.3E-07 54.1 6.9 65 376-446 13-91 (100)
96 COG5175 MOT2 Transcriptional r 96.2 0.0088 1.9E-07 64.6 6.3 79 367-445 111-201 (480)
97 KOG4211 Splicing factor hnRNP- 96.1 0.013 2.8E-07 65.8 7.1 71 373-445 106-180 (510)
98 KOG4307 RNA binding protein RB 95.9 0.01 2.2E-07 68.9 5.5 78 370-448 434-515 (944)
99 KOG0120 Splicing factor U2AF, 95.7 0.02 4.3E-07 65.0 6.9 62 386-447 424-492 (500)
100 PF00658 PABP: Poly-adenylate 95.7 0.0086 1.9E-07 51.7 3.0 49 8-59 22-70 (72)
101 KOG0129 Predicted RNA-binding 95.5 0.031 6.8E-07 63.1 7.4 61 366-428 255-325 (520)
102 KOG0120 Splicing factor U2AF, 95.4 0.012 2.6E-07 66.7 3.6 80 368-448 287-370 (500)
103 PF14608 zf-CCCH_2: Zinc finge 95.2 0.0099 2.2E-07 39.0 1.4 19 239-259 1-19 (19)
104 KOG2185 Predicted RNA-processi 94.9 0.0097 2.1E-07 65.5 0.9 25 236-260 139-163 (486)
105 smart00517 PolyA C-terminal do 94.8 0.018 3.9E-07 48.8 2.2 49 8-59 11-59 (64)
106 PF08777 RRM_3: RNA binding mo 94.8 0.034 7.3E-07 50.9 4.1 55 373-430 4-58 (105)
107 KOG2314 Translation initiation 94.7 0.034 7.4E-07 63.5 4.7 59 386-444 79-141 (698)
108 KOG1548 Transcription elongati 94.7 0.092 2E-06 57.2 7.5 80 366-445 261-350 (382)
109 PF11608 Limkain-b1: Limkain b 94.2 0.12 2.6E-06 46.5 6.0 68 372-446 4-76 (90)
110 KOG1995 Conserved Zn-finger pr 94.0 0.052 1.1E-06 59.0 4.0 84 367-451 63-158 (351)
111 KOG1456 Heterogeneous nuclear 94.0 0.2 4.4E-06 55.1 8.4 75 371-446 288-362 (494)
112 KOG1677 CCCH-type Zn-finger pr 93.9 0.028 6E-07 59.7 1.8 28 233-260 173-201 (332)
113 PF08952 DUF1866: Domain of un 93.5 0.24 5.1E-06 48.4 7.1 72 369-446 26-106 (146)
114 KOG1855 Predicted RNA-binding 93.2 0.055 1.2E-06 60.2 2.6 64 368-432 229-309 (484)
115 KOG4849 mRNA cleavage factor I 92.7 0.085 1.9E-06 57.5 3.2 73 372-445 82-160 (498)
116 KOG1457 RNA binding protein (c 92.6 0.12 2.6E-06 53.6 3.9 69 365-434 205-273 (284)
117 KOG2202 U2 snRNP splicing fact 92.5 0.052 1.1E-06 56.9 1.2 58 386-443 83-144 (260)
118 KOG1996 mRNA splicing factor [ 92.3 0.29 6.2E-06 52.6 6.3 59 385-445 300-365 (378)
119 KOG4206 Spliceosomal protein s 91.7 0.63 1.4E-05 48.1 7.8 76 367-444 143-219 (221)
120 KOG0129 Predicted RNA-binding 91.4 0.54 1.2E-05 53.5 7.6 81 365-447 365-455 (520)
121 KOG4676 Splicing factor, argin 90.9 0.31 6.7E-06 54.0 4.9 74 372-447 9-89 (479)
122 KOG3152 TBP-binding protein, a 90.0 0.18 3.9E-06 53.1 2.2 66 372-438 76-157 (278)
123 KOG2193 IGF-II mRNA-binding pr 89.5 0.86 1.9E-05 51.1 6.9 80 371-453 2-82 (584)
124 KOG4285 Mitotic phosphoprotein 89.5 0.68 1.5E-05 50.0 5.9 63 384-449 209-272 (350)
125 KOG1190 Polypyrimidine tract-b 89.3 1 2.3E-05 50.3 7.4 78 367-445 411-489 (492)
126 KOG1039 Predicted E3 ubiquitin 88.9 0.14 2.9E-06 56.1 0.3 22 238-259 9-30 (344)
127 KOG4307 RNA binding protein RB 88.0 1.7 3.6E-05 51.4 8.1 71 372-442 868-942 (944)
128 KOG1365 RNA-binding protein Fu 85.7 0.63 1.4E-05 51.6 3.1 76 367-443 156-239 (508)
129 KOG2068 MOT2 transcription fac 83.6 0.41 8.8E-06 52.0 0.5 79 369-447 76-163 (327)
130 PF08675 RNA_bind: RNA binding 82.7 3.4 7.5E-05 37.3 5.9 54 372-431 11-64 (87)
131 PF03880 DbpA: DbpA RNA bindin 82.1 3.9 8.4E-05 34.9 5.8 68 372-444 2-74 (74)
132 KOG0112 Large RNA-binding prot 81.9 0.37 7.9E-06 57.9 -0.6 79 366-445 368-449 (975)
133 KOG0128 RNA-binding protein SA 81.3 0.23 4.9E-06 59.3 -2.6 73 368-441 665-741 (881)
134 PF04847 Calcipressin: Calcipr 81.1 4 8.6E-05 41.2 6.4 62 384-447 8-71 (184)
135 KOG2891 Surface glycoprotein [ 80.7 1.2 2.6E-05 47.7 2.7 23 383-405 173-195 (445)
136 PF10309 DUF2414: Protein of u 78.9 8.5 0.00019 32.7 6.7 54 370-429 5-62 (62)
137 KOG1456 Heterogeneous nuclear 78.8 9 0.00019 42.8 8.6 76 371-448 121-200 (494)
138 KOG0112 Large RNA-binding prot 78.8 2.4 5.2E-05 51.3 4.6 86 366-454 451-538 (975)
139 KOG0115 RNA-binding protein p5 78.0 1.9 4.1E-05 45.7 3.1 73 371-444 32-111 (275)
140 KOG0105 Alternative splicing f 77.4 6.7 0.00014 40.2 6.6 68 372-443 117-186 (241)
141 KOG2494 C3H1-type Zn-finger pr 74.5 1 2.2E-05 49.0 0.1 23 238-260 38-61 (331)
142 COG5084 YTH1 Cleavage and poly 74.1 1.6 3.4E-05 46.9 1.3 22 239-260 136-158 (285)
143 KOG1492 C3H1-type Zn-finger pr 72.1 1.7 3.6E-05 45.4 0.9 21 239-259 208-229 (377)
144 PF15023 DUF4523: Protein of u 71.3 13 0.00029 36.7 6.8 75 366-444 82-159 (166)
145 KOG1763 Uncharacterized conser 69.6 1.6 3.5E-05 47.0 0.2 21 239-259 94-114 (343)
146 KOG0128 RNA-binding protein SA 69.1 2.2 4.8E-05 51.3 1.2 73 370-443 736-811 (881)
147 KOG4210 Nuclear localization s 66.9 3 6.6E-05 44.6 1.6 79 368-447 86-168 (285)
148 KOG1365 RNA-binding protein Fu 66.3 8.9 0.00019 42.9 5.0 79 368-447 56-139 (508)
149 KOG1040 Polyadenylation factor 65.8 3.7 7.9E-05 44.9 2.0 26 234-259 74-99 (325)
150 PF11767 SET_assoc: Histone ly 65.8 35 0.00075 29.3 7.4 56 381-441 10-65 (66)
151 KOG2416 Acinus (induces apopto 59.2 9.6 0.00021 44.7 3.8 78 366-446 440-521 (718)
152 PF10650 zf-C3H1: Putative zin 57.8 5.5 0.00012 27.8 1.0 19 239-258 2-21 (23)
153 PF07576 BRAP2: BRCA1-associat 53.4 58 0.0013 30.5 7.3 65 371-435 13-80 (110)
154 KOG1595 CCCH-type Zn-finger pr 52.4 6.9 0.00015 45.2 1.3 24 236-259 235-258 (528)
155 KOG1040 Polyadenylation factor 51.5 5.6 0.00012 43.6 0.4 24 236-259 133-156 (325)
156 PF03467 Smg4_UPF3: Smg-4/UPF3 50.2 14 0.00031 36.8 3.0 68 369-437 6-83 (176)
157 KOG2591 c-Mpl binding protein, 39.6 36 0.00079 39.9 4.4 68 370-440 174-245 (684)
158 KOG2253 U1 snRNP complex, subu 39.2 16 0.00034 43.4 1.5 71 367-443 37-107 (668)
159 KOG4454 RNA binding protein (R 37.5 6.7 0.00015 41.1 -1.5 54 378-431 91-147 (267)
160 COG5084 YTH1 Cleavage and poly 37.0 17 0.00036 39.4 1.2 22 238-259 105-126 (285)
161 PF15513 DUF4651: Domain of un 36.1 49 0.0011 28.4 3.6 18 386-403 9-26 (62)
162 KOG1677 CCCH-type Zn-finger pr 32.6 23 0.00049 37.9 1.4 26 234-259 129-156 (332)
163 COG5252 Uncharacterized conser 32.1 16 0.00034 38.8 0.1 21 239-259 87-107 (299)
164 KOG2494 C3H1-type Zn-finger pr 29.0 26 0.00057 38.5 1.1 22 237-259 71-92 (331)
165 COG5252 Uncharacterized conser 27.3 52 0.0011 35.0 2.9 47 247-295 161-208 (299)
166 COG5152 Uncharacterized conser 24.1 30 0.00064 35.9 0.4 21 239-259 143-164 (259)
167 PF02714 DUF221: Domain of unk 22.1 72 0.0016 33.7 2.9 36 412-449 1-36 (325)
168 PF03468 XS: XS domain; Inter 22.0 65 0.0014 30.3 2.2 44 383-427 29-75 (116)
169 PRK14548 50S ribosomal protein 21.8 1.7E+02 0.0036 26.4 4.6 51 378-428 27-80 (84)
170 KOG4791 Uncharacterized conser 21.8 29 0.00063 40.1 -0.2 23 238-260 119-141 (667)
171 KOG1492 C3H1-type Zn-finger pr 21.4 33 0.00072 36.1 0.2 24 238-262 262-285 (377)
172 PF12186 AcylCoA_dehyd_C: Acyl 20.4 36 0.00077 32.3 0.2 15 23-37 64-78 (114)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=2.2e-15 Score=142.64 Aligned_cols=85 Identities=18% Similarity=0.317 Sum_probs=77.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
.....+++|||+ +++++++|++|+++|++||+|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+
T Consensus 29 ~~~~~~~~lfVg-nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIG-GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEe-CCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444567899999 68899999999999999999999999988 7899999999999999999999999999999999
Q ss_pred EeeCccCchh
Q 039864 441 VKPYKEKGKI 450 (666)
Q Consensus 441 Vk~Ak~K~k~ 450 (666)
|++++++...
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999876543
No 2
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.2e-14 Score=146.72 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=72.5
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.+...++|||+ .|.|+++.|+|++||++||+|+++.|+.| ||||||||||.+.|+|.+||+. ...+|+||+..|
T Consensus 8 ~DT~~TKifVg-gL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 8 GDTTFTKIFVG-GLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CCceEEEEEEc-CcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 45677899999 58999999999999999999999999999 9999999999999999999999 777899999999
Q ss_pred eeCc
Q 039864 442 KPYK 445 (666)
Q Consensus 442 k~Ak 445 (666)
+.|-
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 8874
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=7.9e-14 Score=145.39 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ |++++++|++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.||+..|+||.|.|.+
T Consensus 267 ~~~~~lfV~-NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVY-NLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 344579999 68899999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
+..|.+
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 987764
No 4
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.4e-14 Score=148.83 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
....+.|||. |..+++.|-||+.+|++||+|.||.|+++ -|||||||||+++++|++|-++|++..|.||+|+|+.|
T Consensus 93 ~~~pkRLhVS-NIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVS-NIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEee-cCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3556889999 67899999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+.+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 8874
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=2.5e-13 Score=141.65 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
..+|||+ +++.+++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|.|++|.|.+++
T Consensus 3 ~~~l~V~-nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVN-YLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEe-CCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 6799999 68899999999999999999999999988 689999999999999999999999999999999999988
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
++..
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7653
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=6.9e-13 Score=106.29 Aligned_cols=67 Identities=19% Similarity=0.422 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
|||+ ++++++|+++|+++|++||.|..|.|+.+ +++|||||+|.+.++|++|++.++++.|.|+.|+
T Consensus 1 l~v~-nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVG-NLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEE-SETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEc-CCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999 68899999999999999999999999985 7899999999999999999999999999999885
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.40 E-value=7.2e-13 Score=141.81 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++||+.|++..|.+++|+|.
T Consensus 104 ~~~~~~LfVg-nLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVN-YLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4567899999 68999999999999999999999999988 789999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 8
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.1e-12 Score=135.36 Aligned_cols=75 Identities=20% Similarity=0.375 Sum_probs=70.3
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.++|||+ |+++.+||++|+++|+.||+|++|+|+.| .++|||||+|.++++|+.||. |++..|.||.|.|.++..
T Consensus 4 ~rtVfVg-NLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVS-NVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 6899999 68899999999999999999999999999 578999999999999999996 799999999999998764
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.36 E-value=6.4e-12 Score=142.77 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ +++++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+||.|+|++
T Consensus 105 ~~~~rLfVG-nLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVG-SISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEc-CCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 456899999 68999999999999999999999999988 7999999999999999999999999999999999986
Q ss_pred Cc
Q 039864 444 YK 445 (666)
Q Consensus 444 Ak 445 (666)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 54
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=4.7e-12 Score=141.46 Aligned_cols=87 Identities=21% Similarity=0.337 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.....+|||+ ++++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 282 ~~~~~~l~V~-nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVK-NLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEe-CCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 3456789999 68899999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred CccCchhhHHH
Q 039864 444 YKEKGKIVEKR 454 (666)
Q Consensus 444 Ak~K~k~~~r~ 454 (666)
|+.|..+....
T Consensus 361 a~~k~~~~~~~ 371 (562)
T TIGR01628 361 AQRKEQRRAHL 371 (562)
T ss_pred ccCcHHHHHHH
Confidence 99887665443
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.29 E-value=8.2e-12 Score=133.76 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeC--eEEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICD--SRVLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~G--R~V~V 441 (666)
...++|||+ ++++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++||+.||++.|+| +.|.|
T Consensus 191 ~~~~~lfV~-nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVT-NLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEe-CCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 346789999 68999999999999999999999999988 678999999999999999999999999977 68999
Q ss_pred eeCccCchhh
Q 039864 442 KPYKEKGKIV 451 (666)
Q Consensus 442 k~Ak~K~k~~ 451 (666)
+++.++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998876544
No 12
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=124.16 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
+...+|||+ |+++.+||++|+++|+.||+|++|+|+.| +.+|||||+|.+++.|+.|+. |++..|.+++|.|.++..
T Consensus 3 ~~g~TV~V~-NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVT-NLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEe-cCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 455799999 69999999999999999999999999999 778999999999999999995 599999999999988653
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.24 E-value=2.9e-11 Score=98.55 Aligned_cols=67 Identities=34% Similarity=0.512 Sum_probs=60.1
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
|||+ ++++++++++|+++|+.||.|..|+++++ +.+|+|||+|.+.++|++|++..+++.|+||.|+
T Consensus 1 v~i~-nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYIS-NLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEE-SSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEe-CCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7898 57788999999999999999999999987 4689999999999999999999888999999885
No 14
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3e-11 Score=127.75 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=69.5
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHc-CCCceeeCeEEEEeeC
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAR-GNPHFICDSRVLVKPY 444 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~-lngh~I~GR~V~Vk~A 444 (666)
.+...++|||++ +...++|.+|+++|.+||+|+.|+|+. .+|+|||+|.+.++|+.|.++ .|..+|+|++|.|+|.
T Consensus 224 eD~~I~tLyIg~-l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 224 EDTSIKTLYIGG-LNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cccceeEEEecc-cccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 457788999995 444899999999999999999999987 688999999999999999875 4667899999999998
Q ss_pred cc
Q 039864 445 KE 446 (666)
Q Consensus 445 k~ 446 (666)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=2.8e-11 Score=137.58 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..++|||+ +++.++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVg-nLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVA-SVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEee-cCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 45799999 68889999999999999999999999998 68999999999999999999999999999999999988
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
..+
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 754
No 16
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=6.4e-11 Score=92.64 Aligned_cols=70 Identities=24% Similarity=0.449 Sum_probs=63.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
+|||+ +++..+++++|+++|.+||+|..++++.+ .++|+|||+|.+.+.|++|++.++++.|.|++|.|+
T Consensus 1 ~v~i~-~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVG-NLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEc-CCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58998 46778999999999999999999999886 467999999999999999999999999999999874
No 17
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=5.2e-11 Score=113.35 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=72.2
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.++|||+ ++++++++++|+++|.+||.|..|+|+.| ++||||||+|.+.+.|..|+..+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~-nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVG-NLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEe-CCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999 68899999999999999999999999988 899999999999999999999999999999999999965
Q ss_pred c
Q 039864 446 E 446 (666)
Q Consensus 446 ~ 446 (666)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=3e-11 Score=132.03 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCH--HHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYP--ETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~--EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
..-+|||| ++.|+++++||+..|+.||.|.+|.|++..-||||||+|... +.+++||..||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVG-NLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVG-GLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34689999 699999999999999999999999999886699999999987 789999999999999999999999886
Q ss_pred C
Q 039864 447 K 447 (666)
Q Consensus 447 K 447 (666)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2e-11 Score=125.82 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=73.2
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
--.+||++ +...++-|+||+.|.+||+|.+++|++| |+||||||.|.+.++|++||+.||+..|.+|.|+..||.
T Consensus 62 hfhvfvgd-ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGD-LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehh-cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 44688885 6678999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
.|.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 876
No 20
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-11 Score=124.29 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
-..|+|||++ +..+++|.-|-..|-.||.|.+|.||.| ++||||||+|.-.|+|..|+..||...+.||.|+|+.
T Consensus 8 ~~KrtlYVGG-ladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGG-LADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEecc-chHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4578999996 4557999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
|+|..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98743
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=6.5e-11 Score=134.15 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceee-CeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFIC-DSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~-GR~V~Vk 442 (666)
....++|||+ +++++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVg-nLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVG-KIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeC-CCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3456899999 68899999999999999999999999998 89999999999999999999999998885 7877776
Q ss_pred eCc
Q 039864 443 PYK 445 (666)
Q Consensus 443 ~Ak 445 (666)
++.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 554
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.18 E-value=6.7e-11 Score=132.32 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=69.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.|||+ +++.++||++|+++|++||+|.+|+|++| +++|||||+|.+.++|++|++.+|...|.|+.|+|.|+..
T Consensus 2 sl~Vg-nLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVG-DLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 69999 68999999999999999999999999998 7889999999999999999999999999999999988753
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=1.2e-10 Score=127.94 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++.+++++|+++|++||.|..|.|++| +++|||||+|.+.+.|+.||+.||+..|.|+.|.|++
T Consensus 293 ~~~~~l~v~-nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIG-NLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456899999 68899999999999999999999999987 6899999999999999999999999999999999999
Q ss_pred CccC
Q 039864 444 YKEK 447 (666)
Q Consensus 444 Ak~K 447 (666)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=1.2e-10 Score=126.23 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+..++|||+ +++..++|++|+++|++||.|..|+|++| ++||||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~-nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVG-NLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEc-CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 447899999 57889999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred Ccc
Q 039864 444 YKE 446 (666)
Q Consensus 444 Ak~ 446 (666)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 874
No 25
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=1.7e-10 Score=89.67 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 378 PADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 378 ~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
++++.+++++|+++|++||.|..|.|+.+ +++|||||+|.+.+.|++|++.+++..+.|++|.|.
T Consensus 3 ~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 3 NLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 46788999999999999999999999886 458999999999999999999999999999999873
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.6e-10 Score=128.01 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADS-TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~-~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.+.+++|||+ ++++ .+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+|+..||++.|.|+.|+|.+++
T Consensus 272 ~~~~~~l~v~-nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVS-GLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEe-CCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3467899999 5665 7999999999999999999999987 68999999999999999999999999999999999876
Q ss_pred cC
Q 039864 446 EK 447 (666)
Q Consensus 446 ~K 447 (666)
.+
T Consensus 350 ~~ 351 (481)
T TIGR01649 350 QQ 351 (481)
T ss_pred cc
Confidence 54
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.14 E-value=1.5e-10 Score=125.50 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||. |++..|.|+.|.|+
T Consensus 86 ~~~~~~l~V~-nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVL-QLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4567899999 68899999999999999999999999998 789999999999999999997 59999999999998
Q ss_pred eCccC
Q 039864 443 PYKEK 447 (666)
Q Consensus 443 ~Ak~K 447 (666)
+....
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 76543
No 28
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.1e-10 Score=118.91 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...+|-|+ |++.+++|++|+++|.+||.|..|.|.+| .+||||||+|.+.++|.+||+.||++-++.-.|.|.|+
T Consensus 188 D~~tvRvt-NLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVT-NLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEe-cCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35689999 68889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.11 E-value=1.9e-10 Score=130.41 Aligned_cols=77 Identities=25% Similarity=0.262 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIF--GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkF--G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
...++|||+ ++++.++|++|+++|++| |+|++|+++ |+||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVg-NL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVR-NLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEe-CCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 456899999 689999999999999999 999999885 5899999999999999999999999999999999998
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 8654
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.11 E-value=2.2e-10 Score=126.87 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHc--CCCceeeCeEEEEeeCccC
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAR--GNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~--lngh~I~GR~V~Vk~Ak~K 447 (666)
+++|||+ +++++++|++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++. +++..|.|+.|.|.++..+
T Consensus 2 s~vv~V~-nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVR-NLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEc-CCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 6899999 6899999999999999999999999997 689999999999999999986 4789999999999998654
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=7.4e-11 Score=127.51 Aligned_cols=86 Identities=21% Similarity=0.253 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCc-eeeC--eEEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPH-FICD--SRVLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh-~I~G--R~V~V 441 (666)
.+.+++||+ .+...+||.+|+++|++||.|+||+|++| .+||||||+|.+.|.|..|++.||+. .+.| ..+.|
T Consensus 122 ~~e~KLFvg-~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVG-MLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhh-hccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 567899999 57889999999999999999999999998 99999999999999999999999974 4655 68999
Q ss_pred eeCccCchhhHHH
Q 039864 442 KPYKEKGKIVEKR 454 (666)
Q Consensus 442 k~Ak~K~k~~~r~ 454 (666)
|+|.+++.+..++
T Consensus 201 kFADtqkdk~~~~ 213 (510)
T KOG0144|consen 201 KFADTQKDKDGKR 213 (510)
T ss_pred EecccCCCchHHH
Confidence 9998776554443
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.10 E-value=4.2e-11 Score=126.73 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..++|||+ .++|+++||.|++||++||+|.+|.||+| ++||||||+|++++.+.++|.. ..|.|+||.|.+++|
T Consensus 5 ~~~KlfiG-gisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIG-GLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeec-CcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 67899999 58999999999999999999999999999 9999999999999999999988 899999999999999
Q ss_pred ccCchh
Q 039864 445 KEKGKI 450 (666)
Q Consensus 445 k~K~k~ 450 (666)
.++...
T Consensus 83 v~r~~~ 88 (311)
T KOG4205|consen 83 VSREDQ 88 (311)
T ss_pred cCcccc
Confidence 887643
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.3e-10 Score=119.34 Aligned_cols=79 Identities=13% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
.-.-+||||.. +.++++|..|+..|++||+|+.|+|+.| ++||||||+|+++-+.+.|.+...+..|+|++|.|.
T Consensus 98 gDPy~TLFv~R-LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVAR-LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeee-ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35678999995 7889999999999999999999999999 999999999999999999999999999999999997
Q ss_pred eCcc
Q 039864 443 PYKE 446 (666)
Q Consensus 443 ~Ak~ 446 (666)
.-+.
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 6443
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.7e-10 Score=117.58 Aligned_cols=84 Identities=24% Similarity=0.292 Sum_probs=75.5
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...+.++++||+++.. -+||++||+.|+.||+|.+|||.+| +||+||.|++.|+|..||..||+..|.|..|++.|-
T Consensus 159 Qssp~NtsVY~G~I~~-~lte~~mr~~Fs~fG~I~EVRvFk~--qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIAS-GLTEDLMRQTFSPFGPIQEVRVFKD--QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCcCc-cccHHHHHHhcccCCcceEEEEecc--cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 3467889999996554 7999999999999999999999984 899999999999999999999999999999999998
Q ss_pred ccCchhh
Q 039864 445 KEKGKIV 451 (666)
Q Consensus 445 k~K~k~~ 451 (666)
++.....
T Consensus 236 Ke~~~~~ 242 (321)
T KOG0148|consen 236 KEGDDGI 242 (321)
T ss_pred ccCCCCC
Confidence 8766544
No 35
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.2e-10 Score=112.20 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccCc
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKG 448 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K~ 448 (666)
..++|||+ +|...+++.||+..|+.||+|.+|.|.. ...|||||+|+++.+|+.|+..|++..|+|.+|.|+..+-+.
T Consensus 9 ~~~kVYVG-nL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVG-NLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEec-cCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 36899999 6899999999999999999999999977 588999999999999999999999999999999998776443
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=7.6e-10 Score=86.99 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+|||+ ++++.+++++|+++|.+||.|..+.++.+ +.+|+|||+|.+.+.|+.|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~-~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVG-NLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEe-CCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48888 57788999999999999999999999987 4589999999999999999999999999999999863
No 37
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=1.4e-10 Score=116.01 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.....|-|- |+.+.++-++|+..|++||.|.||.|+.| .+||||||-|.+..+|+.|++.|++.+|+|+.|.|..
T Consensus 11 ~gm~SLkVd-NLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVD-NLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEec-ceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 344566676 78999999999999999999999999999 8999999999999999999999999999999999977
Q ss_pred Ccc
Q 039864 444 YKE 446 (666)
Q Consensus 444 Ak~ 446 (666)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 653
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=4.1e-10 Score=89.18 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=51.0
Q ss_pred HHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 388 VSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 388 Lre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
|+++|++||+|++|.+..++ +|++||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998743 599999999999999999999999999999999875
No 39
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=4.9e-10 Score=93.24 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=52.1
Q ss_pred HHHHHHHhh----cCCCeeEEE-eeec------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 385 DEDVSNYFS----IFGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 385 EedLre~FS----kFG~V~dVr-I~~D------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
+++|+++|+ +||.|.+|. |+.| ++||||||+|.+.++|.+|+..||+..++||.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 688999999 999999995 6554 57999999999999999999999999999999986
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=2.4e-09 Score=117.90 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=77.0
Q ss_pred cCCCC-ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 366 LTSAN-RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 366 ~~~~s-rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
+.+.. +.|||| +.+++++|++|.++|++.|.|.++++++| +.|||||++|.+.+++..|++.||+..+.||+|+
T Consensus 13 ~~~~~~~~v~vg-nip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~ 91 (435)
T KOG0108|consen 13 NSPGLSSSVFVG-NIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLR 91 (435)
T ss_pred cCcccccceEec-CCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEE
Confidence 33444 899999 68899999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EeeCccCchhh
Q 039864 441 VKPYKEKGKIV 451 (666)
Q Consensus 441 Vk~Ak~K~k~~ 451 (666)
|.++..+....
T Consensus 92 v~~~~~~~~~~ 102 (435)
T KOG0108|consen 92 VNYASNRKNAE 102 (435)
T ss_pred eecccccchhH
Confidence 99987655433
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=5.7e-10 Score=118.29 Aligned_cols=84 Identities=30% Similarity=0.435 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..++|||+. ++.+++|+++++||.+||.|.++.||+| +.||||||+|..++.+++++.. .-|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG-~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGG-LPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecC-cCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 477999994 7789999999999999999999999999 8999999999999999999988 899999999999999
Q ss_pred ccCchhhHHH
Q 039864 445 KEKGKIVEKR 454 (666)
Q Consensus 445 k~K~k~~~r~ 454 (666)
.+|.......
T Consensus 174 ~pk~~~~~~~ 183 (311)
T KOG4205|consen 174 IPKEVMQSTK 183 (311)
T ss_pred cchhhccccc
Confidence 9988665443
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.94 E-value=7.7e-10 Score=109.01 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.-.||||+ +++..++|+-|+++|-+.|+|.+++|++| ..+|||||+|.++|+|+-|++-||...+-||+|+|+.+
T Consensus 8 qd~tiyvg-nld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVG-NLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEe-cCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999 68889999999999999999999999999 68999999999999999999999999999999999987
Q ss_pred c
Q 039864 445 K 445 (666)
Q Consensus 445 k 445 (666)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.6e-10 Score=112.32 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
..+.-|||+ +++++.||.||--.|++||+|++|.+++| +|+||||..|++..+.-.|+..+|+..|.||.|+|..
T Consensus 33 kdsA~Iyig-gl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIG-GLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEEC-CCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 446789999 58999999999999999999999999999 9999999999999999999999999999999999954
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.2e-09 Score=101.07 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=72.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
...+.++||||+ |+++-++||.|.++|++.|+|..|.+=.| ..-||+||.|-..++|..|+.-+++..++.|.|.
T Consensus 31 ~a~r~S~tvyVg-NlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 31 EALRKSCTVYVG-NLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HHHhhcceEEEe-eeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 345789999999 79999999999999999999999988777 4569999999999999999999999999999999
Q ss_pred EeeC
Q 039864 441 VKPY 444 (666)
Q Consensus 441 Vk~A 444 (666)
|.|-
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9874
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=1.5e-09 Score=113.01 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=68.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccCch
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGK 449 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K~k 449 (666)
.++||+ |++..+++.+|+.+|++||+|.+|.|++ .||||..++...++.|+..|++-.|+|..|.|+.++.|.+
T Consensus 3 ~KLFIG-NLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 3 VKLFIG-NLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchhcc-CCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 478999 6888999999999999999999999985 6999999999999999999999999999999999888754
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.82 E-value=3.6e-09 Score=117.33 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=72.7
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccCc
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKG 448 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K~ 448 (666)
+||+ ++.++++|++|+..|+.||.|+.|.+++| ++||||||+|.+.++|++|++.||+-+|-||.|+|..-.++-
T Consensus 281 l~vg-nLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVG-NLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhc-ccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999 78999999999999999999999999999 899999999999999999999999999999999998777665
Q ss_pred hhh
Q 039864 449 KIV 451 (666)
Q Consensus 449 k~~ 451 (666)
+.+
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 444
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=7.9e-09 Score=114.60 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.-+|.|. |++|.+.+.+|+.+|++||.|.+|.||.. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIR-NLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIR-NLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEee-cCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 4466676 79999999999999999999999999975 6669999999999999999999999999999999999998
Q ss_pred CchhhH
Q 039864 447 KGKIVE 452 (666)
Q Consensus 447 K~k~~~ 452 (666)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 875443
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=1.1e-08 Score=105.39 Aligned_cols=80 Identities=13% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...++.|. -++-.+|+++||.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+|+..+..+.|+|..|
T Consensus 40 skTNLIvN-YLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVN-YLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeee-ecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34445554 68889999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+|...
T Consensus 119 RPSs~ 123 (360)
T KOG0145|consen 119 RPSSD 123 (360)
T ss_pred cCChh
Confidence 98654
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=2.1e-08 Score=91.59 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
-.++-+||. |+++++|.|++-++|++||.|..|||=.. .-||-|||.|++..+|++|++.|++..+++|-+.|-.+++
T Consensus 16 evnriLyir-NLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIR-NLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEe-cCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345667777 79999999999999999999999999766 7899999999999999999999999999999999987764
No 50
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.77 E-value=1.8e-08 Score=110.77 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=65.9
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcC------------CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCc
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIF------------GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPH 432 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkF------------G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh 432 (666)
...+..++|||+ ++++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++.
T Consensus 170 ~~~~~~r~lyVg-nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVG-GIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 346778999999 688999999999999975 4566666655 78999999999999999995 7999
Q ss_pred eeeCeEEEEeeCc
Q 039864 433 FICDSRVLVKPYK 445 (666)
Q Consensus 433 ~I~GR~V~Vk~Ak 445 (666)
.|.|+.|.|.+..
T Consensus 246 ~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 IYSNVFLKIRRPH 258 (509)
T ss_pred EeeCceeEecCcc
Confidence 9999999997544
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.7e-08 Score=109.90 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=69.9
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCcee-eCeEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFI-CDSRV 439 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I-~GR~V 439 (666)
...+.-+.|||+. ++.++.|++|.-+|++-|+|-++|||+| .+||||||||.+.+.|+.|++.+|+++| .||.|
T Consensus 78 ~~p~~G~EVfvGk-IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 78 PPPPRGCEVFVGK-IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCCCceEEecC-CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 4457778999996 5678999999999999999999999999 8999999999999999999999999987 57888
Q ss_pred EEee
Q 039864 440 LVKP 443 (666)
Q Consensus 440 ~Vk~ 443 (666)
.|..
T Consensus 157 gvc~ 160 (506)
T KOG0117|consen 157 GVCV 160 (506)
T ss_pred EEEE
Confidence 7743
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=4.3e-09 Score=112.22 Aligned_cols=74 Identities=19% Similarity=0.472 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
-+.|||+ ...+.+.|+.||..|..||+|.+|.+-+| ++|||+||+|+-+|.|..|++.||+..+.||.|+|.+-
T Consensus 113 McRvYVG-SIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVG-SISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeee-eeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 4679999 46789999999999999999999999999 99999999999999999999999999999999999754
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3.1e-08 Score=102.26 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=68.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
--|||- |+..+++|.-|+++|+.||-|..|+|++| +.||||||++.+.++|..|+..||+..+.+|.+.|..-..
T Consensus 279 ~ciFvY-NLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 279 WCIFVY-NLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eEEEEE-ecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 358887 68889999999999999999999999999 8899999999999999999999999999999999976443
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2e-08 Score=108.84 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=72.0
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccCchh
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGKI 450 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K~k~ 450 (666)
|||. |++..++..+|.++|+.||+|.+|+|+.| .+||| ||.|+++++|++|++.+|+..+.|+.|.|..+..+.++
T Consensus 79 ~~i~-nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIK-NLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeec-CCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 9999 78899999999999999999999999999 89999 99999999999999999999999999999888776554
Q ss_pred h
Q 039864 451 V 451 (666)
Q Consensus 451 ~ 451 (666)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 3
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.8e-08 Score=107.98 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCc-eeeC--e
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPH-FICD--S 437 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh-~I~G--R 437 (666)
..+...-++||+. .+.+++|.|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+..++.. .|-| .
T Consensus 29 ~~d~~~vKlfVgq-Iprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQ-IPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCchhhhheecc-CCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 4456677999995 5668999999999999999999999999 88999999999999999999988764 4544 5
Q ss_pred EEEEeeCccCc
Q 039864 438 RVLVKPYKEKG 448 (666)
Q Consensus 438 ~V~Vk~Ak~K~ 448 (666)
.|.||+|....
T Consensus 108 pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 108 PVQVKYADGER 118 (510)
T ss_pred ceeecccchhh
Confidence 78999885433
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=3.3e-08 Score=109.82 Aligned_cols=78 Identities=26% Similarity=0.444 Sum_probs=73.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.||||+ .+.+.++.++|.++|+.+|+|..|.++.+ .+||||||+|.-.|++++|++..+...|.||.|.|.+|+.
T Consensus 6 ~TlfV~-~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVS-RLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEe-cCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 799999 57889999999999999999999999987 8899999999999999999999999999999999999987
Q ss_pred Cch
Q 039864 447 KGK 449 (666)
Q Consensus 447 K~k 449 (666)
|..
T Consensus 85 R~r 87 (678)
T KOG0127|consen 85 RAR 87 (678)
T ss_pred ccc
Confidence 654
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=5.6e-08 Score=106.05 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
...-+-|||. |+..++|||.|++.|++||.|+.|+.++| ||||.|.+.++|-+|++.+|+..|+|..|.|-.|+|
T Consensus 256 ms~VKvLYVR-NL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 256 MSKVKVLYVR-NLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhheeeeeee-ccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 3456678998 67889999999999999999999999865 999999999999999999999999999999999988
Q ss_pred Cchhh
Q 039864 447 KGKIV 451 (666)
Q Consensus 447 K~k~~ 451 (666)
..+..
T Consensus 331 ~~k~k 335 (506)
T KOG0117|consen 331 VDKKK 335 (506)
T ss_pred hhhhc
Confidence 65543
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.64 E-value=4e-08 Score=112.42 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=77.9
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+....-+|||||+. ++..++|.||+++|+.||+|++|.++- .||+|||++....+|.+|+.+|+.+.|.++.|+|+|
T Consensus 415 d~isV~SrTLwvG~-i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 415 DHISVCSRTLWVGG-IPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred cceeEeeeeeeecc-ccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 45677889999995 778999999999999999999999987 899999999999999999999999999999999999
Q ss_pred CccCchhh
Q 039864 444 YKEKGKIV 451 (666)
Q Consensus 444 Ak~K~k~~ 451 (666)
+..++-..
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 98876444
No 59
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5e-08 Score=96.75 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
..+++|||+ |++.++.|.+|+++|.|||.|.+|.+..- ..-.|+||.|+++.+|+.||.--++-.++|-+|+|..+..
T Consensus 4 r~~~~iyvG-NLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVG-NLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEec-CCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 567899999 68889999999999999999999998543 3457999999999999999998899999999999988764
Q ss_pred C
Q 039864 447 K 447 (666)
Q Consensus 447 K 447 (666)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.49 E-value=1.1e-07 Score=94.11 Aligned_cols=84 Identities=18% Similarity=0.334 Sum_probs=73.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dV-rI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
.......+|||+ |++..++|.-|.+.|+.||.|... .|++| .++|||||.|.+.|.+.+|++.||+.+++.|+|
T Consensus 91 ~nl~vganlfvg-NLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 91 KNLDVGANLFVG-NLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccc-ccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 344455899999 688899999999999999998775 67776 889999999999999999999999999999999
Q ss_pred EEeeCccCch
Q 039864 440 LVKPYKEKGK 449 (666)
Q Consensus 440 ~Vk~Ak~K~k 449 (666)
.|..+..+..
T Consensus 170 tv~ya~k~~~ 179 (203)
T KOG0131|consen 170 TVSYAFKKDT 179 (203)
T ss_pred EEEEEEecCC
Confidence 9998876543
No 61
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=2e-07 Score=88.76 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
--|||++ ....++|++|.+.|+.||+|..|.+-.| -.|||+.|.|++.+.|++|++.+|+..|.|..|.|.|+--
T Consensus 73 wIi~Vtg-vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 73 WIIFVTG-VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred EEEEEec-cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 3588885 4557999999999999999999999888 5689999999999999999999999999999999999865
Q ss_pred Cc
Q 039864 447 KG 448 (666)
Q Consensus 447 K~ 448 (666)
++
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 44
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.45 E-value=3.6e-07 Score=92.66 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHH----HhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 369 ANRQIYLTFPADSTFKDEDVSN----YFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre----~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.+.||||. ++...+..++|++ +|++||+|.+|...+- +.||=|||+|.+.+.|-.|+..|++-.+-|+.++|.+
T Consensus 8 pn~TlYIn-nLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYIN-NLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeeh-hccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34499998 5777899999998 9999999999998766 8999999999999999999999999999999999999
Q ss_pred CccCchhhHH
Q 039864 444 YKEKGKIVEK 453 (666)
Q Consensus 444 Ak~K~k~~~r 453 (666)
|+.+.+...+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9998877655
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.44 E-value=3.9e-07 Score=99.37 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=72.6
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHh-hcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYF-SIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~F-SkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
+......|.+||+ |.++++..+||+++| ++-|+|+-|.+.+| |+||+|.|+|+++|.+++|+++||.+.+.||.|
T Consensus 38 gn~~~r~R~vfIt-NIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 38 GNVAARDRSVFIT-NIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred CCcccccceEEEe-cCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 3445555669999 578899999999999 57899999999999 999999999999999999999999999999999
Q ss_pred EEeeCc
Q 039864 440 LVKPYK 445 (666)
Q Consensus 440 ~Vk~Ak 445 (666)
.||...
T Consensus 117 ~vKEd~ 122 (608)
T KOG4212|consen 117 VVKEDH 122 (608)
T ss_pred EEeccC
Confidence 998654
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=9.5e-08 Score=108.72 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
..+|.|. |+++..+-.+|+.+|+.||.|.+|+||.- -+||||||+|.++.+|.+|++.|..+.+-||++.+.||.
T Consensus 613 ~tKIlVR-NipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVR-NIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeee-ccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 3579998 68899999999999999999999999974 679999999999999999999999999999999999998
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
...-
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=3.2e-07 Score=95.16 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
++.++|||-+ ++-++.+.+|-++|-.||.|.+.+|..| ++|.||||.|+++.+++.||..||+..|.=++++|..
T Consensus 283 PeGCNlFIYH-LPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYH-LPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEe-CchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 5678999985 6678999999999999999999999988 9999999999999999999999999999999999977
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
-++|.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 66654
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.6e-07 Score=98.38 Aligned_cols=83 Identities=25% Similarity=0.432 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.....++||. +++..++++.|+++|+.||+|..++|+.+ +++|||||.|..+++|.+|+..+|+..|.++.+.|.+
T Consensus 267 ~~~~~nl~vk-nld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 267 SLQGANLYVK-NLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAV 345 (369)
T ss_pred cccccccccc-cCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhH
Confidence 5567789998 48889999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred CccCchh
Q 039864 444 YKEKGKI 450 (666)
Q Consensus 444 Ak~K~k~ 450 (666)
++.+..+
T Consensus 346 ~qr~~~r 352 (369)
T KOG0123|consen 346 AQRKEDR 352 (369)
T ss_pred Hhhhccc
Confidence 8744433
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=8.2e-07 Score=101.32 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
|||. |+.|++|.++|..+|.+.|.|.+|.|.+- .|.|||||.|.++++|++|++.|+++.|+|+.|.|+...
T Consensus 518 lfvk-Nlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVK-NLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhh-cCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999 79999999999999999999999999764 244999999999999999999999999999999998876
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.35 E-value=5.9e-07 Score=100.25 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.-.|+++|.+ +..++.--||+++|++||+|+-++|+.+ --|.|||||+.+.+.|.++|+.|+...|.||.|.|..
T Consensus 403 ~~gRNlWVSG-LSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSG-LSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeec-cccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3467899984 7788889999999999999999999998 5578999999999999999999999999999999977
Q ss_pred Cc
Q 039864 444 YK 445 (666)
Q Consensus 444 Ak 445 (666)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 65
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.28 E-value=8.4e-07 Score=93.01 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
+..+.+|+|+ |...+++.++||..|++||+|.+|.|++ +|+||.|+-.++|..|+..|++.+|+|++++|...+.
T Consensus 75 sk~stkl~vg-Nis~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVG-NISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccC-CCCccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 4577899999 6778999999999999999999999975 7999999999999999999999999999999987765
Q ss_pred Cc
Q 039864 447 KG 448 (666)
Q Consensus 447 K~ 448 (666)
|-
T Consensus 150 rl 151 (346)
T KOG0109|consen 150 RL 151 (346)
T ss_pred cc
Confidence 43
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=1.8e-06 Score=89.68 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCc-eeeC--eEEEEe
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPH-FICD--SRVLVK 442 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh-~I~G--R~V~Vk 442 (666)
..|++||+ -+...-.|||||..|..||+|++|.+.+- .+||++||.|.+..+|+.||..|++. .+-| ..+.||
T Consensus 18 ~drklfvg-ml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVG-MLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhh-hhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56789998 46778899999999999999999999875 89999999999999999999998874 3444 468899
Q ss_pred eCccCchhhHHH
Q 039864 443 PYKEKGKIVEKR 454 (666)
Q Consensus 443 ~Ak~K~k~~~r~ 454 (666)
.+...+++..|+
T Consensus 97 ~ADTdkER~lRR 108 (371)
T KOG0146|consen 97 FADTDKERTLRR 108 (371)
T ss_pred eccchHHHHHHH
Confidence 997777776666
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=2.7e-06 Score=91.32 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+....|||.. ...+.+|+||+..|+-||+|..|.+.++ .+||||||+|.+..+...|+..||-..+.|.-++|.+
T Consensus 208 k~fnRiYVaS-vHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 208 KKFNRIYVAS-VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HhhheEEeee-cCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 4556899984 4557999999999999999999999887 8999999999999999999999999999999999976
Q ss_pred Cc
Q 039864 444 YK 445 (666)
Q Consensus 444 Ak 445 (666)
+.
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 54
No 72
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.14 E-value=4.3e-06 Score=84.16 Aligned_cols=75 Identities=20% Similarity=0.373 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIF-GPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkF-G~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
-+||.. +..-+.|..+..||.+| |.|..+|+-++ .|||||||.|++.|.|+-|-+.||+-.+.|+.|.|..--+
T Consensus 51 ~~~~~~-~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 51 VVYVDH-IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred ceeecc-cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 467764 45568899999999999 78888888776 8999999999999999999999999999999999987665
Q ss_pred C
Q 039864 447 K 447 (666)
Q Consensus 447 K 447 (666)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 5
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.12 E-value=4.8e-06 Score=91.89 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=65.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeee----cCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPY----QQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~----DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.+|||. +++.++++.+|++.|.+||+|+..+|.. ++...||||+|.+.++++.||.. ++..|+||++.|+.-+.
T Consensus 289 ~~i~V~-nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVK-NLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEee-cCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 349999 6889999999999999999999999965 24448999999999999999999 79999999999976544
No 74
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.5e-06 Score=89.50 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+.-.-|||- -+..-+|++||.-+|+.||+|.+|.|++| .+--|+||.|++.+++++|.-+|.+..|+.|+|.|..
T Consensus 237 PPeNVLFVC-KLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVC-KLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEE-ecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 445567775 34556889999999999999999999999 4455999999999999999999999999999999977
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
.+.-.+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 654433
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.06 E-value=6.4e-06 Score=90.17 Aligned_cols=76 Identities=18% Similarity=0.105 Sum_probs=70.0
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...+..+||+|. |+++++|.+.||+-|..||.|..+.||.. ++|| .|.|.++++|++||+.|++..++||.|.|..
T Consensus 531 gaarKa~qIiir-NlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 531 GAARKACQIIIR-NLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccccEEEEe-cCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 446788899999 79999999999999999999999999776 7786 9999999999999999999999999999975
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=4.3e-06 Score=85.01 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=71.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
+....-+||||. +....++|+-|.++|-+-|+|..|.|+.+ +.| |+||.|.++-.+.-|++.+|+..+.++.+.|
T Consensus 4 aaae~drtl~v~-n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQ-NMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHH-hhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 456778999999 68889999999999999999999999876 555 9999999999999999999999999999999
Q ss_pred eeCc
Q 039864 442 KPYK 445 (666)
Q Consensus 442 k~Ak 445 (666)
+..-
T Consensus 82 ~~r~ 85 (267)
T KOG4454|consen 82 TLRC 85 (267)
T ss_pred cccc
Confidence 7654
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.00 E-value=1e-05 Score=92.54 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=74.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCe
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDS 437 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR 437 (666)
..++..+++||+ |+...++|+.|-..|+.||+|..|+||+- +-|-+|||.|-+..+|++|++.|++.+|.++
T Consensus 169 dgDP~TTNlyv~-Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVG-NLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeee-cCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 447889999999 67889999999999999999999999975 6778999999999999999999999999999
Q ss_pred EEEEeeCcc
Q 039864 438 RVLVKPYKE 446 (666)
Q Consensus 438 ~V~Vk~Ak~ 446 (666)
.+++.|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999998854
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=5.6e-06 Score=84.23 Aligned_cols=71 Identities=23% Similarity=0.465 Sum_probs=65.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
..+||+ .+.+.+.+.||.++|.+||.|.+|.+ ..|||||.|.+.-+|+.|+..+++.+|+|-++.|.+++.
T Consensus 2 ~rv~vg-~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIG-RLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred Cceeec-ccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 468999 68899999999999999999999998 469999999999999999999999999999988888874
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.84 E-value=4.3e-05 Score=79.17 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=72.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.......+|||. ||++.++++||+++|.+||++..+-|-|| ++.|-|=|+|...++|.+|++.+++.-++|+.+.+
T Consensus 78 ~~~~~~~~v~v~-NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVS-NLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeee-cCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 345666889999 79999999999999999999999999999 88899999999999999999999999999999888
Q ss_pred eeCc
Q 039864 442 KPYK 445 (666)
Q Consensus 442 k~Ak 445 (666)
....
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 6543
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.73 E-value=4e-05 Score=78.80 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....+.+||+ +.++.+|-+++..+|+.||.|..|.|++| ++|||+||.|.+.+.+..++. |++..|.|+.+.|.
T Consensus 98 ~~d~~sv~v~-nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVG-NVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEe-ccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3557789999 68888888889999999999999999998 679999999999999999999 79999999999997
Q ss_pred eCccC
Q 039864 443 PYKEK 447 (666)
Q Consensus 443 ~Ak~K 447 (666)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 66544
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.65 E-value=3.9e-05 Score=79.55 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=67.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
-+||-+ .+.-+++++-|...|.+|-.-...++++| +++|||||.|.+++++.+|+.+|++.+++.|.|.......
T Consensus 191 fRIfcg-dlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 191 FRIFCG-DLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ceeecc-cccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 356665 34556999999999999999999999999 9999999999999999999999999999999999876544
Q ss_pred Cc
Q 039864 447 KG 448 (666)
Q Consensus 447 K~ 448 (666)
|.
T Consensus 270 ke 271 (290)
T KOG0226|consen 270 KE 271 (290)
T ss_pred Hh
Confidence 43
No 82
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.46 E-value=4.2e-05 Score=84.63 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=63.0
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
|.+....+.+=+.-.+-.--|-++|..+|.+||+|++|.|-+. ---|.|||.+...|-.|... .+..|++|.|+|.|
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFW 442 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhcc-ccceecCceeEEEE
Confidence 4555555555554222223467899999999999999999663 23589999999999888777 89999999999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
..+-.
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87644
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.40 E-value=0.0011 Score=74.00 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccC
Q 039864 378 PADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 378 ~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K 447 (666)
-|+|.+|++||.+||+-.+ |+++.++++ |..|=|||+|.+.|++++|+++ +...+..|-|.|-.+..+
T Consensus 17 GLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 17 GLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 5899999999999999975 688888877 8899999999999999999999 889999999999877544
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.36 E-value=0.0012 Score=71.13 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD--------VRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFIC 435 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d--------VrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~ 435 (666)
...+..|||. +++.++|-+++.++|+++|-|.. |++-.| +-||=|.++|-..|+|..|+..|++..|.
T Consensus 131 ~~~Nt~VYVs-gLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVS-GLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEec-CCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3556679998 57788999999999999998853 455445 77899999999999999999999999999
Q ss_pred CeEEEEeeCc
Q 039864 436 DSRVLVKPYK 445 (666)
Q Consensus 436 GR~V~Vk~Ak 445 (666)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999998774
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.00014 Score=81.72 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=66.2
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
.+...++|+|. +++.++++++|++.|+.||+|..|+.-. .++|-.||.|-|...|++|++.|++..|.|++|+
T Consensus 71 ~~~~~~~L~v~-nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVF-NLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEE-ecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35667889997 7899999999999999999999987644 4899999999999999999999999999999998
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.27 E-value=6.3e-05 Score=52.93 Aligned_cols=23 Identities=43% Similarity=1.149 Sum_probs=18.3
Q ss_pred Cccceeccc-cccCCCCCcccCCC
Q 039864 237 YRPCLYFAR-GFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpClYFar-G~Ck~GssCrf~Hg 259 (666)
.++|.+|.+ |.|++|.+|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 579999888 99999999999997
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.00071 Score=69.17 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=60.5
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..+.|.|. ++...+...+|.++|++||++..+.+ .++|+||.|+..+++++|++.+++..+.|+.|.|..+
T Consensus 98 s~~r~~~~-~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 98 THFRLIVR-NLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeeec-cchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 34456666 67778888999999999999966666 4789999999999999999999999999999999433
No 88
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.82 E-value=0.00061 Score=46.69 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.7
Q ss_pred ccceeccccccCCCCCcccCCC
Q 039864 238 RPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~GssCrf~Hg 259 (666)
.+|.+|..|.|..|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.80 E-value=0.0035 Score=68.92 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
+..|.|.++....+|.+.|-.+|+-||.|..|+|.+. ++--|.|.|.+...|.-|++.|++|.|.|++|+|...+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6778888778889999999999999999999999996 44679999999999999999999999999999997654
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.66 E-value=0.0054 Score=63.25 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CC----cceEEEEeCCHHHHHHHHHcCCCceee---CeEEE
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QK----RMFGFVTFVYPETVKLILARGNPHFIC---DSRVL 440 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kS----RGFGFVTF~~~EsAk~AL~~lngh~I~---GR~V~ 440 (666)
+-||+||.+ ++.++.-.+|..+|..|---+.+.|.+- +. +=+|||+|.+...|.+|+..|||..|+ +..++
T Consensus 33 ~VRTLFVSG-LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSG-LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeecc-CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 468999985 6778999999999999977778877553 11 249999999999999999999999985 77899
Q ss_pred EeeCccCchhhHHH
Q 039864 441 VKPYKEKGKIVEKR 454 (666)
Q Consensus 441 Vk~Ak~K~k~~~r~ 454 (666)
+..|+...+++.++
T Consensus 112 iElAKSNtK~kr~k 125 (284)
T KOG1457|consen 112 IELAKSNTKRKRRK 125 (284)
T ss_pred eeehhcCcccccCC
Confidence 99988777665443
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.60 E-value=0.0021 Score=72.60 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=63.7
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.||+|+-. +.-..++.||.++|+.+|+|.+|+|+.| ++||.++|.|.+.+.+-.||.. .|..+.|-.|.|+...
T Consensus 179 ~Rtvf~~q-la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQ-LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHH-HhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 34555543 3356789999999999999999999999 8999999999999999999965 9999999999997653
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.57 E-value=0.01 Score=53.96 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=62.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhc--CCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceee----CeEEE
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSI--FGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFIC----DSRVL 440 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSk--FG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~----GR~V~ 440 (666)
+||.|. |.+-..|.++|.+.+.. .|...-+-+|.| -+.|||||.|.+++.|.+-.+..+++.+. .+.+.
T Consensus 2 TTvMir-NIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIR-NIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEe-cCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 578888 56668899998888764 378888889988 66899999999999999999998887764 56788
Q ss_pred EeeCccCc
Q 039864 441 VKPYKEKG 448 (666)
Q Consensus 441 Vk~Ak~K~ 448 (666)
|.+|+-.+
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 88876443
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.53 E-value=0.0014 Score=69.36 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
-...+||...++++.+++++|+.+|..+|.|..|+++.+ ..+|||||.|.+......++.. ..+.+.++.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 345678833379999999999999999999999999877 8899999999999999999987 78999999999987
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
..++.+
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 766543
No 94
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.37 E-value=0.0078 Score=48.64 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=40.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHH
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLIL 426 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL 426 (666)
+.|-|.+-.. -..+.|..+|.+||+|+++.+.. .+-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~--~~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPP--DLAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECc--hHHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 4455643221 13477888999999999999974 4679999999999999985
No 95
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.36 E-value=0.011 Score=54.07 Aligned_cols=65 Identities=28% Similarity=0.387 Sum_probs=49.0
Q ss_pred cCCCCCCCCHHHHHHHhhcCCCeeEEE-------------eeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCe-EEEE
Q 039864 376 TFPADSTFKDEDVSNYFSIFGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKLILARGNPHFICDS-RVLV 441 (666)
Q Consensus 376 ~~~ld~~~TEedLre~FSkFG~V~dVr-------------I~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR-~V~V 441 (666)
||+.. ....|-++|++||.|.+.. ++. ....--|+|.++.+|.+||.+ |+.+|.|. .|-|
T Consensus 13 Gfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV 86 (100)
T PF05172_consen 13 GFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGV 86 (100)
T ss_dssp ---GG---GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEE
T ss_pred ccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEE
Confidence 55432 5678999999999998886 333 567899999999999999999 99999985 5667
Q ss_pred eeCcc
Q 039864 442 KPYKE 446 (666)
Q Consensus 442 k~Ak~ 446 (666)
++.++
T Consensus 87 ~~~~~ 91 (100)
T PF05172_consen 87 KPCDP 91 (100)
T ss_dssp EE-HH
T ss_pred EEcHH
Confidence 87743
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.20 E-value=0.0088 Score=64.59 Aligned_cols=79 Identities=10% Similarity=0.167 Sum_probs=60.2
Q ss_pred CCCCceEEEcCCCCCCCCHH---HH--HHHhhcCCCeeEEEeeec----CC-cc-e-EEEEeCCHHHHHHHHHcCCCcee
Q 039864 367 TSANRQIYLTFPADSTFKDE---DV--SNYFSIFGPVQDVRIPYQ----QK-RM-F-GFVTFVYPETVKLILARGNPHFI 434 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEe---dL--re~FSkFG~V~dVrI~~D----kS-RG-F-GFVTF~~~EsAk~AL~~lngh~I 434 (666)
.....-+||.++...-..|+ -| .+||++||.|..|.|-+. .+ .+ + -||||...|+|.++|+..++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34556688886655555555 33 589999999999988653 11 12 2 39999999999999999999999
Q ss_pred eCeEEEEeeCc
Q 039864 435 CDSRVLVKPYK 445 (666)
Q Consensus 435 ~GR~V~Vk~Ak 445 (666)
+||.|+.....
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999885543
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.08 E-value=0.013 Score=65.77 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=60.5
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~d-VrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
|-+. -|+|.+||+||.+||+..=.|.+ |-++.| ++-|=|||.|++.|.|++||.. +.+.|..|-|+|-++.
T Consensus 106 VRLR-GLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 106 VRLR-GLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred EEec-CCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 3344 58999999999999998877776 556666 7778999999999999999999 9999999999997653
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.93 E-value=0.01 Score=68.89 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEe---eecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQD-VRI---PYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~d-VrI---~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
..-|||. -+...+++.++-++|..--.|++ |.| +.|+-++-|||.|..++++..|+..-..+++..|.|+|....
T Consensus 434 g~~lyv~-~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 434 GGALYVF-QLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cceEEec-cCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 3468998 47888999999999999999988 655 345888999999999988888887768899999999997655
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 513 ~~~ 515 (944)
T KOG4307|consen 513 DYA 515 (944)
T ss_pred hHH
Confidence 443
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.74 E-value=0.02 Score=64.98 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccC
Q 039864 386 EDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 386 edLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K 447 (666)
|+|+.-+++||.|.+|.|+.+ -.-|--||.|.+.+++++|++.|+|..+.||.|....|-+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 678888999999999999876 34467899999999999999999999999999999887643
No 100
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.70 E-value=0.0086 Score=51.65 Aligned_cols=49 Identities=31% Similarity=0.485 Sum_probs=40.0
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHH
Q 039864 8 SILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKS 59 (666)
Q Consensus 8 ~ivf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~ 59 (666)
..+|.+|++++|++|.||-|+||= ....|++.|=-.| .+|+..|..|-.
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~~-~~L~~kv~eA~~ 70 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLEDP-ELLREKVQEAIE 70 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHTH-HHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCCH-HHHHHHHHHHHH
Confidence 458999999999999999999984 6678889887775 566777777754
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.031 Score=63.11 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=50.2
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-------CCcc---eEEEEeCCHHHHHHHHHc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-------QKRM---FGFVTFVYPETVKLILAR 428 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-------kSRG---FGFVTF~~~EsAk~AL~~ 428 (666)
..+-+++|||++ ++|+++|+.|...|..||.|. |..+.. -.+| |.|+.|+++..++..+..
T Consensus 255 ~~~~S~KVFvGG-lp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 255 SPRYSRKVFVGG-LPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccccceeecC-CCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 346789999995 889999999999999999963 555521 4567 999999999999987765
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.39 E-value=0.012 Score=66.68 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
-...+|||++ +...+++..+++.-..||++...+++.| .++||+|..|.++-....|++.+|+..+.++++.|..
T Consensus 287 ~~~~ki~v~~-lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGG-LPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhcc-CcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3456799984 7778999999999999999999999988 8999999999999999999999999999999999987
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
|-...
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 75543
No 103
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.23 E-value=0.0099 Score=38.97 Aligned_cols=19 Identities=42% Similarity=1.128 Sum_probs=17.0
Q ss_pred cceeccccccCCCCCcccCCC
Q 039864 239 PCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 239 pClYFarG~Ck~GssCrf~Hg 259 (666)
+|+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998877 999999999993
No 104
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=94.88 E-value=0.0097 Score=65.53 Aligned_cols=25 Identities=44% Similarity=1.135 Sum_probs=23.8
Q ss_pred CCccceeccccccCCCCCcccCCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHGG 260 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg~ 260 (666)
..|||.||-.|-|+.|.+|||.||.
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 5899999999999999999999994
No 105
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=94.83 E-value=0.018 Score=48.83 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=36.9
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHH
Q 039864 8 SILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKS 59 (666)
Q Consensus 8 ~ivf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~ 59 (666)
.-+|.+|++++|++|.||-|+||= .+-.|++.|=-.|+ +|.+-|..|-.
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~~-~L~~kv~EA~~ 59 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESPE-LLRSKVDEALE 59 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCHH-HHHHHHHHHHH
Confidence 357999999999999999999985 55578888755544 55555655544
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.80 E-value=0.034 Score=50.86 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC
Q 039864 373 IYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN 430 (666)
Q Consensus 373 IYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln 430 (666)
|.+.+ +...++-++|++.|++||.|.-|.+.. ----|+|-|.+++.|+.|++.+.
T Consensus 4 l~~~g-~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 4 LKFSG-LGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEec-CCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 44543 555678999999999999999988865 33479999999999999998743
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.034 Score=63.47 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceee-CeEEEEeeC
Q 039864 386 EDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFIC-DSRVLVKPY 444 (666)
Q Consensus 386 edLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~-GR~V~Vk~A 444 (666)
.-|...|+++|+|+.+.+|.| ..+||.|+.|.+...|+.|++.+||+.|+ ..+..|...
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehh
Confidence 457789999999999999987 88999999999999999999999988775 455666443
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.66 E-value=0.092 Score=57.16 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=61.9
Q ss_pred cCCCCceEEEcCC---CCCCCC-------HHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee
Q 039864 366 LTSANRQIYLTFP---ADSTFK-------DEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC 435 (666)
Q Consensus 366 ~~~~srtIYV~~~---ld~~~T-------EedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~ 435 (666)
-.+..++|.+.+. .++..+ ++||++-=++||.|.+|.|--....|-+-|+|.+.+.|..+|+.|+|.+|+
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 3455677777632 223444 356667788999999998742267899999999999999999999999999
Q ss_pred CeEEEEeeCc
Q 039864 436 DSRVLVKPYK 445 (666)
Q Consensus 436 GR~V~Vk~Ak 445 (666)
||.|.-...-
T Consensus 341 gRql~A~i~D 350 (382)
T KOG1548|consen 341 GRQLTASIWD 350 (382)
T ss_pred ceEEEEEEeC
Confidence 9999986543
No 109
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.20 E-value=0.12 Score=46.45 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCCCHH----HHHHHhhcCC-CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 372 QIYLTFPADSTFKDE----DVSNYFSIFG-PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 372 tIYV~~~ld~~~TEe----dLre~FSkFG-~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.+||. |++.+.+-. -|++++.-+| +|.+|. .|-|.|.|.+++.|.+|.+.|++..+-|++|.|.....
T Consensus 4 ~L~V~-NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVS-NLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEE-S--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred EEEEe-cCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 57787 566555554 4667777775 777763 58899999999999999999999999999999987643
No 110
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.99 E-value=0.052 Score=59.04 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeeec----CCcceEEEEeCCHHHHHHHHHcCCCcee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFI 434 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d--------VrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I 434 (666)
....-+|||- ++...+++++|.++|.++|.|.. |.|-+| +.||=|-|+|+++-+|+.|+.-.++..+
T Consensus 63 ~s~~~ti~v~-g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVW-GCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceee-ccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 5566789997 56668999999999999998853 333334 8889999999999999999999999999
Q ss_pred eCeEEEEeeCccCchhh
Q 039864 435 CDSRVLVKPYKEKGKIV 451 (666)
Q Consensus 435 ~GR~V~Vk~Ak~K~k~~ 451 (666)
+|-.|+|..|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGVE 158 (351)
T ss_pred cCCCchhhhhhhccCcc
Confidence 99999998888776543
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.98 E-value=0.2 Score=55.13 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.-+.|-+....++.-+.|-++|..||.|+.|+.|+- +-|-|.|++.+..++++|+..||+..+-|.+|.|...+.
T Consensus 288 ~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 288 CVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred cEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 344554455667888999999999999999999984 679999999999999999999999999999999987653
No 112
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.90 E-value=0.028 Score=59.72 Aligned_cols=28 Identities=36% Similarity=0.899 Sum_probs=25.1
Q ss_pred CCCCCccceeccc-cccCCCCCcccCCCC
Q 039864 233 FNLGYRPCLYFAR-GFCKNGESCKFVHGG 260 (666)
Q Consensus 233 ~~~g~KpClYFar-G~Ck~GssCrf~Hg~ 260 (666)
..++-|+|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 3557889999999 999999999999993
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.50 E-value=0.24 Score=48.36 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCceEEEcCCCC------CCCCH---HHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 369 ANRQIYLTFPAD------STFKD---EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 369 ~srtIYV~~~ld------~~~TE---edLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
.--||.|. ... ..+.+ .+|-+.|.+||+|.=||++- +-=+|||.+-+.|-+|+.. ++..|+|+.|
T Consensus 26 pDaTVvVs-v~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~l 99 (146)
T PF08952_consen 26 PDATVVVS-VDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRTL 99 (146)
T ss_dssp TT-EEEEE-ECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEEE
T ss_pred CCceEEEE-ecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEEE
Confidence 44577775 222 23443 36778899999999999875 5689999999999999998 9999999999
Q ss_pred EEeeCcc
Q 039864 440 LVKPYKE 446 (666)
Q Consensus 440 ~Vk~Ak~ 446 (666)
.|+.-.+
T Consensus 100 ~i~LKtp 106 (146)
T PF08952_consen 100 KIRLKTP 106 (146)
T ss_dssp EEEE---
T ss_pred EEEeCCc
Confidence 9976443
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.24 E-value=0.055 Score=60.19 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=52.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-----------------CCcceEEEEeCCHHHHHHHHHcCC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-----------------QKRMFGFVTFVYPETVKLILARGN 430 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-----------------kSRGFGFVTF~~~EsAk~AL~~ln 430 (666)
-.+|+|.+. ++..+-.-+-|.++|+.+|.|..|||..- ..+-+|||.|+..+.|.+|.+.++
T Consensus 229 l~srtivae-nLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAE-NLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEe-cCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 468899988 45555566999999999999999999642 125579999999999999999976
Q ss_pred Cc
Q 039864 431 PH 432 (666)
Q Consensus 431 gh 432 (666)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 53
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.74 E-value=0.085 Score=57.49 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=59.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG--~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
-+||+ |+-|.+|++||-+..-.-| .|.+++...+ ++|||+.|...+..++++.++.|....|.|..-.|-.+.
T Consensus 82 ~~YvG-NL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVG-NLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEec-ceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 37999 6888899999988887766 4455555444 899999999999999999999999999999877776553
No 116
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=92.62 E-value=0.12 Score=53.64 Aligned_cols=69 Identities=9% Similarity=0.142 Sum_probs=53.1
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCcee
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFI 434 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I 434 (666)
+..+...|+||. |+..+++|++|+..|+.|--..-.+|-....--.+||.|++-+.|..|+..|.+..|
T Consensus 205 ~~~~acstlfia-nl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIA-NLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhh-ccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 445677899999 688899999999999999766666664311123799999999999999988666544
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.50 E-value=0.052 Score=56.91 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=49.7
Q ss_pred HHHHHHhh-cCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 386 EDVSNYFS-IFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 386 edLre~FS-kFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
|||-..|+ +||+|+++.|-.+ .-+|=.+|.|...|+|++|++.||+..+.|++|....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 45555555 9999999988665 5678899999999999999999999999999998864
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.26 E-value=0.29 Score=52.57 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 385 DEDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 385 EedLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
|+++++--++||.|..|.|..+ .-| -||.|+..+.|-+|+-.||+.+|.||.|..-.|.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavR--iFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVR--IFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhhe--eeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678888999999999988654 223 7999999999999999999999999999876654
No 119
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.71 E-value=0.63 Score=48.14 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee-CeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC-DSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~-GR~V~Vk~A 444 (666)
.+....+|++ +++..++.+.+..+|.+|.--.+||++.. .++.+||+|.+...+..|...+.+-.|- ...+.|..+
T Consensus 143 ~ppn~ilf~~-niP~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLT-NIPSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEe-cCCcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 4556677777 57778999999999999999999998763 5789999999999988888887765554 556666554
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.44 E-value=0.54 Score=53.54 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=65.8
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceee----
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFS-IFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFIC---- 435 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FS-kFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~---- 435 (666)
...-..||||||. +.--++-++|..+|+ -||-|.=|-|=.| =.||=|=|||.+..+--+||.. .-..|+
T Consensus 365 q~lDprrTVFVGg-vprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~ 442 (520)
T KOG0129|consen 365 QPIDPRRTVFVGG-LPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDI 442 (520)
T ss_pred cccCccceEEecC-CCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccc
Confidence 4455689999995 666799999999999 8999999988776 4589999999999999999987 333332
Q ss_pred CeEEEEeeCc-cC
Q 039864 436 DSRVLVKPYK-EK 447 (666)
Q Consensus 436 GR~V~Vk~Ak-~K 447 (666)
.++|+||+|. +.
T Consensus 443 ~KRVEIkPYv~eD 455 (520)
T KOG0129|consen 443 DKRVEIKPYVMED 455 (520)
T ss_pred ceeeeecceeccc
Confidence 4689999997 44
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.91 E-value=0.31 Score=54.00 Aligned_cols=74 Identities=15% Similarity=0.314 Sum_probs=59.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
-|-|+ |++..+|.+.++.+|+-.|+|.+++|+.. ...--+||.|.+..+|..|-. |-..++-++.|.|-+|
T Consensus 9 vIqva-nispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVA-NISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeec-ccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 57777 67788999999999999999999999652 233489999999999987754 4677778888888887
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
-.-
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 543
No 122
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=90.04 E-value=0.18 Score=53.10 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=54.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---------CCcc-----e--EEEEeCCHHHHHHHHHcCCCceee
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---------QKRM-----F--GFVTFVYPETVKLILARGNPHFIC 435 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---------kSRG-----F--GFVTF~~~EsAk~AL~~lngh~I~ 435 (666)
-||+..++ ..++-.-||++|++||.|-.|.+-.. +.+| | |+|.|.+-..|+++.+.||+..|.
T Consensus 76 VvylS~IP-p~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 76 VVYLSNIP-PYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred EEEeccCC-CccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48998654 46899999999999999999998543 1112 1 899999999999999999999999
Q ss_pred CeE
Q 039864 436 DSR 438 (666)
Q Consensus 436 GR~ 438 (666)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 984
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.49 E-value=0.86 Score=51.10 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCC-ceeeCeEEEEeeCccCch
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNP-HFICDSRVLVKPYKEKGK 449 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lng-h~I~GR~V~Vk~Ak~K~k 449 (666)
.++|++ ++...++-.||+..|..--.-.+=.++ -+.||+||.+.+..-|.+|++.+++ ..+.|+++.|....+|..
T Consensus 2 nklyig-nL~p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIG-NLSPQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccc-ccCCCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368998 577889999999999754110111111 2579999999999999999999886 468999999988877765
Q ss_pred hhHH
Q 039864 450 IVEK 453 (666)
Q Consensus 450 ~~~r 453 (666)
+..+
T Consensus 79 rsrk 82 (584)
T KOG2193|consen 79 RSRK 82 (584)
T ss_pred Hhhh
Confidence 5443
No 124
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.48 E-value=0.68 Score=49.96 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=53.5
Q ss_pred CHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCe-EEEEeeCccCch
Q 039864 384 KDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDS-RVLVKPYKEKGK 449 (666)
Q Consensus 384 TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR-~V~Vk~Ak~K~k 449 (666)
.-.-|-.+|++||+|++..... .-.|=.|.|.+.-.|++||.+ |+.+|+|. .|-|++...|..
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 4467899999999999988773 556999999999999999999 99999985 578888776653
No 125
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=89.30 E-value=1 Score=50.26 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=64.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCe-EEEEeeCc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDS-RVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR-~V~Vk~Ak 445 (666)
.+.+.+|-+. +.+..++||+|++.|.+-|-+.+....+.+.|-++.+.+.+.|+|-.|+-.++.|.+.+. -++|...+
T Consensus 411 ~PpsatlHls-nip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLS-NIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeec-cCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 3555566666 456689999999999999998888776666777999999999999999999999998775 78886654
No 126
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=0.14 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.998 Sum_probs=21.3
Q ss_pred ccceeccccccCCCCCcccCCC
Q 039864 238 RPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~GssCrf~Hg 259 (666)
.+|+||++|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 6999999999999999999997
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=87.99 E-value=1.7 Score=51.43 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=60.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCe-eEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V-~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
++.--++..++++-+||-+||.-|-.+ .+|+|-+. +.-|=+-|-|++.++|.+|...+++..|..|+|.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 344345788999999999999999877 45666554 677899999999999999999999999999999875
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.68 E-value=0.63 Score=51.59 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=56.7
Q ss_pred CCCCceEEEc-CCCCCCCCHHHHHHHhhcC----CCeeEEEee-e-c-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeE
Q 039864 367 TSANRQIYLT-FPADSTFKDEDVSNYFSIF----GPVQDVRIP-Y-Q-QKRMFGFVTFVYPETVKLILARGNPHFICDSR 438 (666)
Q Consensus 367 ~~~srtIYV~-~~ld~~~TEedLre~FSkF----G~V~dVrI~-~-D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~ 438 (666)
.+...++.|. ..+.++.++.||.+||..- |-+++|-.+ + | |.-|=|||.|..++.|+.||.+ +...|.-|-
T Consensus 156 lsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 156 LSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred CCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 3434566665 4689999999999999732 233444333 3 4 7889999999999999999999 877777777
Q ss_pred EEEee
Q 039864 439 VLVKP 443 (666)
Q Consensus 439 V~Vk~ 443 (666)
|++-+
T Consensus 235 IElFR 239 (508)
T KOG1365|consen 235 IELFR 239 (508)
T ss_pred HHHHH
Confidence 77644
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.58 E-value=0.41 Score=52.01 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=57.4
Q ss_pred CCceEEEcCCCCCCCCHHHH--HHHhhcCCCeeEEEeeecC----Ccc---eEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 369 ANRQIYLTFPADSTFKDEDV--SNYFSIFGPVQDVRIPYQQ----KRM---FGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedL--re~FSkFG~V~dVrI~~Dk----SRG---FGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
...-+||......-.+|..| .+||++||.|..|.+-.+. +-| -++|||...|+|..||...++.+.+|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34456665433333556666 5799999999999997761 111 28999999999999999999999999986
Q ss_pred EEeeCccC
Q 039864 440 LVKPYKEK 447 (666)
Q Consensus 440 ~Vk~Ak~K 447 (666)
+......+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 65544444
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=82.74 E-value=3.4 Score=37.25 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCC
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNP 431 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lng 431 (666)
=.||+|+..| ...||.+.|+.||.|. |..+- -.-|||...+.+.|+.|+..+..
T Consensus 11 VFhltFPkeW--K~~DI~qlFspfG~I~-VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEW--KTSDIYQLFSPFGQIY-VSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT----HHHHHHHCCCCCCEE-EEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHh--hhhhHHHHhccCCcEE-EEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 4577888776 5689999999999975 44443 46799999999999999887543
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.08 E-value=3.9 Score=34.87 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=41.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCC-----CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFG-----PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG-----~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
++||.-.-...++..+|-.++..-+ .|-+|+|. .-|.||.-... .|+.+++.+++..+.|++|.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555422334678899999998775 55677774 46999998665 788899999999999999999875
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=81.92 E-value=0.37 Score=57.88 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=63.9
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|+|++ +++.++++.+|+..|..||.|++|.|-.- +---||||.|.+.+.+-.|+..+.+..|..-.+++.
T Consensus 368 D~~atrTLf~G-nl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLG-NLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhc-CcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 35678999999 79999999999999999999999998543 223499999999999999998877777655555554
Q ss_pred eCc
Q 039864 443 PYK 445 (666)
Q Consensus 443 ~Ak 445 (666)
.-.
T Consensus 447 lG~ 449 (975)
T KOG0112|consen 447 LGQ 449 (975)
T ss_pred ccc
Confidence 443
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.33 E-value=0.23 Score=59.26 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEee--ec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIP--YQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~--~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
+...++||. ++...+.++||...|+.||.|+.|+|. .+ +.||+|+|.|..++.+.+|++....+.+.-..+-|
T Consensus 665 R~~~~~fvs-nl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 665 RDLIKIFVS-NLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHHh-hcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 445578888 688899999999999999999999886 22 88999999999999999999985555555333444
No 134
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.11 E-value=4 Score=41.19 Aligned_cols=62 Identities=15% Similarity=0.015 Sum_probs=46.3
Q ss_pred CHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEEEeeCccC
Q 039864 384 KDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVLVKPYKEK 447 (666)
Q Consensus 384 TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~Vk~Ak~K 447 (666)
..+.|+++|..|+.+....+.+ +=+=..|.|.+.+.|.+|...++ +..+.|..++|..++.-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999999888876 33348999999999999999999 89999999999877543
No 135
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=80.71 E-value=1.2 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.4
Q ss_pred CCHHHHHHHhhcCCCeeEEEeee
Q 039864 383 FKDEDVSNYFSIFGPVQDVRIPY 405 (666)
Q Consensus 383 ~TEedLre~FSkFG~V~dVrI~~ 405 (666)
-+|+.|+..|+.||.|..|.||.
T Consensus 173 pse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcc
Confidence 46788999999999999999964
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=78.88 E-value=8.5 Score=32.69 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=42.2
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcC----CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcC
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIF----GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARG 429 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkF----G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~l 429 (666)
...|+|.+. + +++.+||+.||..| + ...|..+-|. -+=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv-d-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-D-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-C-CCCHHHHHHHHHHhcccCC-CceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 346888753 3 58899999999999 5 4577777762 3779999999999999763
No 137
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=78.81 E-value=9 Score=42.82 Aligned_cols=76 Identities=16% Similarity=0.047 Sum_probs=61.2
Q ss_pred ceEEEc-CCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcc-eEEEEeCCHHHHHHHHHcCCCceeeC--eEEEEeeCcc
Q 039864 371 RQIYLT-FPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRM-FGFVTFVYPETVKLILARGNPHFICD--SRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~-~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRG-FGFVTF~~~EsAk~AL~~lngh~I~G--R~V~Vk~Ak~ 446 (666)
+-+.++ .|+-+-+|-+-|...-...|+|..|.|++ +.| -|.|+|++.+.|++|-+.||+..|.- =.++|..|++
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 334444 56778899999999999999999999987 344 59999999999999999999987743 3677777776
Q ss_pred Cc
Q 039864 447 KG 448 (666)
Q Consensus 447 K~ 448 (666)
..
T Consensus 199 ~r 200 (494)
T KOG1456|consen 199 TR 200 (494)
T ss_pred ce
Confidence 43
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=78.80 E-value=2.4 Score=51.33 Aligned_cols=86 Identities=9% Similarity=0.115 Sum_probs=70.3
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC--eEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD--SRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G--R~V~Vk~ 443 (666)
-....+.++|+.+..| +.-..|...|..||.|..|.+-. -.-|++|.|++...++.|+..|.+.-|.| +++.|..
T Consensus 451 kst~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCCCCC-ChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3456778999976665 67889999999999999977633 45699999999999999999999888876 7899988
Q ss_pred CccCchhhHHH
Q 039864 444 YKEKGKIVEKR 454 (666)
Q Consensus 444 Ak~K~k~~~r~ 454 (666)
+.+-...++..
T Consensus 528 a~~~~~~Pqq~ 538 (975)
T KOG0112|consen 528 ASPPGATPQQN 538 (975)
T ss_pred ccCCCCChhhh
Confidence 88777666554
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=78.02 E-value=1.9 Score=45.72 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCC----CceeeCeEEEEee
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGN----PHFICDSRVLVKP 443 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~ln----gh~I~GR~V~Vk~ 443 (666)
..|||+ ++..-++-+.+.+-|+.||+|+...+.-| +.-|=|+|.|...-.+.+|+...+ .-.+.++.+-|.+
T Consensus 32 a~l~V~-nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVV-NLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEE-ecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999 67778999999999999999999888777 677789999999988888887643 2345778888865
Q ss_pred C
Q 039864 444 Y 444 (666)
Q Consensus 444 A 444 (666)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 140
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=77.36 E-value=6.7 Score=40.25 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=54.4
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCcee--eCeEEEEee
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFI--CDSRVLVKP 443 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I--~GR~V~Vk~ 443 (666)
.+.|.. ++..-+.+||++|.-+-|.|.-..|.+| |.|.|.|...|+.+-|+.+|....+ .|-...+..
T Consensus 117 RVvVsG-Lp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 117 RVVVSG-LPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eEEEec-CCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 566764 5556788999999999999999888765 8999999999999999999877655 344444433
No 141
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=74.50 E-value=1 Score=48.97 Aligned_cols=23 Identities=39% Similarity=0.862 Sum_probs=21.1
Q ss_pred ccceeccccccCCCCC-cccCCCC
Q 039864 238 RPCLYFARGFCKNGES-CKFVHGG 260 (666)
Q Consensus 238 KpClYFarG~Ck~Gss-Crf~Hg~ 260 (666)
-.|+=|.||.|++|.. |||.|=.
T Consensus 38 eVCReF~rn~C~R~d~~CkfaHP~ 61 (331)
T KOG2494|consen 38 EVCREFLRNTCSRGDRECKFAHPP 61 (331)
T ss_pred HHHHHHHhccccCCCccccccCCC
Confidence 3899999999999999 9999963
No 142
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=74.06 E-value=1.6 Score=46.94 Aligned_cols=22 Identities=41% Similarity=0.972 Sum_probs=21.0
Q ss_pred cceec-cccccCCCCCcccCCCC
Q 039864 239 PCLYF-ARGFCKNGESCKFVHGG 260 (666)
Q Consensus 239 pClYF-arG~Ck~GssCrf~Hg~ 260 (666)
||+|| .+|.|..|+.|.|.|.+
T Consensus 136 ~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 136 PCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CcccccccceeccCCCCCccccC
Confidence 99999 99999999999999984
No 143
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=72.10 E-value=1.7 Score=45.35 Aligned_cols=21 Identities=48% Similarity=1.238 Sum_probs=18.9
Q ss_pred cceec-cccccCCCCCcccCCC
Q 039864 239 PCLYF-ARGFCKNGESCKFVHG 259 (666)
Q Consensus 239 pClYF-arG~Ck~GssCrf~Hg 259 (666)
-|+|| +.|+|-+|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 58886 6899999999999996
No 144
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=71.28 E-value=13 Score=36.74 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=54.0
Q ss_pred cCCCCceEEEcCCCCCCCCH---HHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 366 LTSANRQIYLTFPADSTFKD---EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TE---edLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
..+.-.||.|...-..--.. ..|-...+.||+|++|.+. .|--+.|+|.+..+|=+|+..... ..-|..+.+.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34667789997522111122 3455667899999999986 466899999999999999988444 5567788887
Q ss_pred eC
Q 039864 443 PY 444 (666)
Q Consensus 443 ~A 444 (666)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 74
No 145
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=69.57 E-value=1.6 Score=47.00 Aligned_cols=21 Identities=43% Similarity=1.184 Sum_probs=20.4
Q ss_pred cceeccccccCCCCCcccCCC
Q 039864 239 PCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 239 pClYFarG~Ck~GssCrf~Hg 259 (666)
.|-||-.|.|..|.-|+|.|+
T Consensus 94 vCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHhccCCCCCCcccccch
Confidence 799999999999999999998
No 146
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.07 E-value=2.2 Score=51.33 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=62.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|. ++++.-|.+.++..++++|.+.+++++.. +.+|-+||.|.++.++.+++..+....+.-+-+.|..
T Consensus 736 K~~v~i~-g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAIS-GPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhhee-CCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 5567777 57788999999999999999999998765 8899999999999999999988777777666666644
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=66.87 E-value=3 Score=44.58 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=62.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
....++|++ ...|.+.+.+...+|.++|.+.++.+... .++||+.|.|...+.+..+++....+.+.++.+..-.
T Consensus 86 ~~~~~~f~g-~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVG-ELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccc-ccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 457788888 57888888889999999999988887653 8899999999999999999998444566666666544
Q ss_pred CccC
Q 039864 444 YKEK 447 (666)
Q Consensus 444 Ak~K 447 (666)
...+
T Consensus 165 ~~~~ 168 (285)
T KOG4210|consen 165 NTRR 168 (285)
T ss_pred cccc
Confidence 4333
No 148
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=66.30 E-value=8.9 Score=42.95 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCCceEEEc-CCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 368 SANRQIYLT-FPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 368 ~~srtIYV~-~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++.|. .-++|.-++.+|..+|...-.+.--+.+.. +..|.|.|.|.++|.-+-|++. +.|.+.+|-|.|.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 334455554 568999999999999975433222222222 6679999999999999999999 9999999999997
Q ss_pred eCccC
Q 039864 443 PYKEK 447 (666)
Q Consensus 443 ~Ak~K 447 (666)
.+...
T Consensus 135 ka~ge 139 (508)
T KOG1365|consen 135 KATGE 139 (508)
T ss_pred ccCch
Confidence 76543
No 149
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=65.83 E-value=3.7 Score=44.95 Aligned_cols=26 Identities=38% Similarity=0.948 Sum_probs=23.6
Q ss_pred CCCCccceeccccccCCCCCcccCCC
Q 039864 234 NLGYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 234 ~~g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
..+-..|+||-+|.|+.|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 44678999999999999999999995
No 150
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=65.83 E-value=35 Score=29.32 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 381 STFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 381 ~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
-.++-++++.-+.+|+- .+ |..| ..|| ||.|.+.++|+++....++..+-+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~--I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DR--IRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ce--EEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 45788999999999986 33 3333 5676 89999999999999998888887777654
No 151
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=59.24 E-value=9.6 Score=44.71 Aligned_cols=78 Identities=6% Similarity=0.031 Sum_probs=59.3
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCcee---eCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFS-IFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFI---CDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FS-kFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I---~GR~V~V 441 (666)
-...+.-|||. ++---||...|+.+.. ..|.|++. -+|+-|--|||+|.+.+.|-+....|++... +++.|.|
T Consensus 440 R~~~SnvlhI~-nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHID-NLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeee-cccccchHHHHHHHHhhccCchHHH--HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34556678888 4555689999999999 66777777 3354566799999999999999999888764 5677777
Q ss_pred eeCcc
Q 039864 442 KPYKE 446 (666)
Q Consensus 442 k~Ak~ 446 (666)
.+...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 66543
No 152
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=57.82 E-value=5.5 Score=27.83 Aligned_cols=19 Identities=37% Similarity=0.961 Sum_probs=16.1
Q ss_pred cceecccc-ccCCCCCcccCC
Q 039864 239 PCLYFARG-FCKNGESCKFVH 258 (666)
Q Consensus 239 pClYFarG-~Ck~GssCrf~H 258 (666)
-|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999988 8854 7899999
No 153
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=53.39 E-value=58 Score=30.46 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=49.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceee
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIF-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFIC 435 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkF-G~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~ 435 (666)
.++.+-..+.+-++-++|..+.+.+ ..|..+||++| ..|=-..+.|.+.+.|+.-....||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444444566777788888777766 46788999999 56656889999999999999998887654
No 154
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=52.38 E-value=6.9 Score=45.20 Aligned_cols=24 Identities=42% Similarity=1.114 Sum_probs=22.1
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
..-||-=|-||-|++|-+|.|.||
T Consensus 235 s~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 235 SSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cCccCcccccCCCCCCCccccccc
Confidence 345999999999999999999999
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=51.51 E-value=5.6 Score=43.56 Aligned_cols=24 Identities=38% Similarity=0.993 Sum_probs=22.7
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
..|-|.+|.+|||.+|.+|++.|-
T Consensus 133 ~~k~c~~~~~g~c~~g~~c~~~h~ 156 (325)
T KOG1040|consen 133 AIKKCKWYKEGFCRGGPSCKKRHE 156 (325)
T ss_pred hhhccchhhhccCCCcchhhhhhh
Confidence 578999999999999999999997
No 156
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=50.16 E-value=14 Score=36.80 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhc-CCCe---eEEEeeec------CCcceEEEEeCCHHHHHHHHHcCCCceeeCe
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSI-FGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKLILARGNPHFICDS 437 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSk-FG~V---~dVrI~~D------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR 437 (666)
...+|.|. .|+..+||+++++..+. ++.. ..+.-... ..-.-|+|.|.+.+++..-.+.++++.+.+.
T Consensus 6 ~~~KvVIR-~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIR-RLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEE-EE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEe-CCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 34578888 57889999999997776 6665 22321111 1112389999999999999999999877543
No 157
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=39.59 E-value=36 Score=39.92 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=49.6
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhc--CCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEE
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSI--FGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVL 440 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSk--FG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~ 440 (666)
+|.|.|-.-...++-+|+|+.+|.. +-++.+|..-.+ -+ =||||++..+|+.|...|. -..|.|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~n-WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DN-WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--Cc-eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4555554445667889999999974 778899987652 23 5899999999999987653 3456777654
No 158
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=39.17 E-value=16 Score=43.37 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=60.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
-+..-++||+ +....+..+-++.....+|.|-++.+.. |||..|.......+|+..+....++|..+.++.
T Consensus 37 ~~~~~~vfv~-~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVG-NISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEec-chhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3455678888 5667788888899999999999887754 999999999999999999888889998888765
No 159
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=37.54 E-value=6.7 Score=41.10 Aligned_cols=54 Identities=35% Similarity=0.527 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCC
Q 039864 378 PADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNP 431 (666)
Q Consensus 378 ~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lng 431 (666)
+++..++++.+...|++-|+|+.+|+..+ +.|.|+||++-...++-.++..-.+
T Consensus 91 pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 91 PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 36667899999999999999999999987 7899999999888887777766333
No 160
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=36.99 E-value=17 Score=39.36 Aligned_cols=22 Identities=50% Similarity=1.165 Sum_probs=21.2
Q ss_pred ccceeccccccCCCCCcccCCC
Q 039864 238 RPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~GssCrf~Hg 259 (666)
-+|++|-+|-|+.|-.|.|+|+
T Consensus 105 V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 105 VVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred cccchhccccCcCCCccccccC
Confidence 3999999999999999999998
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.08 E-value=49 Score=28.39 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCeeEEEe
Q 039864 386 EDVSNYFSIFGPVQDVRI 403 (666)
Q Consensus 386 edLre~FSkFG~V~dVrI 403 (666)
.+||++|+..|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999987766
No 162
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=32.55 E-value=23 Score=37.85 Aligned_cols=26 Identities=42% Similarity=0.893 Sum_probs=21.6
Q ss_pred CCCCccceecc-ccccCC-CCCcccCCC
Q 039864 234 NLGYRPCLYFA-RGFCKN-GESCKFVHG 259 (666)
Q Consensus 234 ~~g~KpClYFa-rG~Ck~-GssCrf~Hg 259 (666)
-+.-..|.+|. .|+|+. |.+|||-||
T Consensus 129 ~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 129 RYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred cccCCcceeeecCccccccCchhhhcCC
Confidence 34567899865 699999 999999888
No 163
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=32.11 E-value=16 Score=38.77 Aligned_cols=21 Identities=43% Similarity=1.078 Sum_probs=20.4
Q ss_pred cceeccccccCCCCCcccCCC
Q 039864 239 PCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 239 pClYFarG~Ck~GssCrf~Hg 259 (666)
.|-.|.-+.|..|..|.|.||
T Consensus 87 vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 87 VCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHhccCccccCchhhhhcc
Confidence 799999999999999999998
No 164
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=29.00 E-value=26 Score=38.50 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=19.6
Q ss_pred CccceeccccccCCCCCcccCCC
Q 039864 237 YRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpClYFarG~Ck~GssCrf~Hg 259 (666)
+-=|+=|+||-|.+-+ |||+|.
T Consensus 71 v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 71 VIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred EEEEeccccCccCccc-ceecCC
Confidence 4469999999999987 999998
No 165
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=27.28 E-value=52 Score=35.01 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=26.8
Q ss_pred ccCCCC-CcccCCCCCCCCCCCCCccccCCCcccccchhhhhHHHHhhHH
Q 039864 247 FCKNGE-SCKFVHGGFGDGGDVNGVIVGSPNKMDGFYLQQHDEIMRMKAA 295 (666)
Q Consensus 247 ~Ck~Gs-sCrf~Hg~~~~~~~~~~~~~gSP~~le~l~~~q~~ellr~r~~ 295 (666)
.|.||+ .|.|.|- ++++.-..-+..- -..-..+.+++|+|+-|.+-+
T Consensus 161 ~CPng~~~C~y~H~-Lp~GyVLsrdk~K-d~tq~eislEefIE~eR~~L~ 208 (299)
T COG5252 161 TCPNGNMRCSYIHK-LPDGYVLSRDKIK-DSTQVEISLEEFIELERQSLP 208 (299)
T ss_pred eCCCCCceeeeeec-cCccceecccccc-ccccccccHHHHHHHHhccCC
Confidence 699986 7999997 5442111000000 112224556889998887664
No 166
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=24.10 E-value=30 Score=35.95 Aligned_cols=21 Identities=48% Similarity=1.168 Sum_probs=18.0
Q ss_pred cce-eccccccCCCCCcccCCC
Q 039864 239 PCL-YFARGFCKNGESCKFVHG 259 (666)
Q Consensus 239 pCl-YFarG~Ck~GssCrf~Hg 259 (666)
.|+ |=.-|||--|-+|+|+|-
T Consensus 143 VCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 143 VCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cccchhhcccccCCchhhhhhh
Confidence 565 557899999999999996
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.06 E-value=72 Score=33.73 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=25.4
Q ss_pred EEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccCch
Q 039864 412 GFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGK 449 (666)
Q Consensus 412 GFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K~k 449 (666)
|||||++..+|+.|++.+..+ +++.+.|+.|-+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCccc
Confidence 799999999999999853332 234557776655443
No 168
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=21.99 E-value=65 Score=30.29 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCH-HHHHHHHH
Q 039864 383 FKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYP-ETVKLILA 427 (666)
Q Consensus 383 ~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~-EsAk~AL~ 427 (666)
++.+.|+++|+.|.++. |+..++ -++|++.|.|... .--+.|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 35589999999999974 777776 6689999999874 33444443
No 169
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.83 E-value=1.7e+02 Score=26.37 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHhhc-CC-CeeEEEeeec-CCcceEEEEeCCHHHHHHHHHc
Q 039864 378 PADSTFKDEDVSNYFSI-FG-PVQDVRIPYQ-QKRMFGFVTFVYPETVKLILAR 428 (666)
Q Consensus 378 ~ld~~~TEedLre~FSk-FG-~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~ 428 (666)
..+.+.+..++++.+++ || +|.+|+.+.- ...-=|||++...+.|..+..+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 35567899999999987 66 7888877653 1112499999998888877554
No 170
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=29 Score=40.06 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=21.4
Q ss_pred ccceeccccccCCCCCcccCCCC
Q 039864 238 RPCLYFARGFCKNGESCKFVHGG 260 (666)
Q Consensus 238 KpClYFarG~Ck~GssCrf~Hg~ 260 (666)
-||++|.||+|-.|--|-|+|--
T Consensus 119 ~P~l~~~K~~e~~~D~~s~Lh~P 141 (667)
T KOG4791|consen 119 SPQLRSVKKVESSEDVPSPLHPP 141 (667)
T ss_pred chHHHHhhhhhhhccccccCCCC
Confidence 39999999999999999999974
No 171
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=21.43 E-value=33 Score=36.06 Aligned_cols=24 Identities=38% Similarity=0.946 Sum_probs=19.7
Q ss_pred ccceeccccccCCCCCcccCCCCCC
Q 039864 238 RPCLYFARGFCKNGESCKFVHGGFG 262 (666)
Q Consensus 238 KpClYFarG~Ck~GssCrf~Hg~~~ 262 (666)
.-|+||--|-|.| -+|||+|-...
T Consensus 262 pacryfllgkcnn-pncryvhihys 285 (377)
T KOG1492|consen 262 PACRYFLLGKCNN-PNCRYVHIHYS 285 (377)
T ss_pred chhhhhhhccCCC-CCceEEEEeec
Confidence 4699999999976 68999996543
No 172
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=20.44 E-value=36 Score=32.34 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.9
Q ss_pred hhhhhhhhhccCChh
Q 039864 23 SKIMGYILIQDVKER 37 (666)
Q Consensus 23 sKI~G~lLlQd~~e~ 37 (666)
-=|||||||||-++.
T Consensus 64 ~iims~LLl~dA~k~ 78 (114)
T PF12186_consen 64 HIIMSYLLLRDASKA 78 (114)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHh
Confidence 348999999998876
Done!