Query 039864
Match_columns 666
No_of_seqs 353 out of 1336
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 4.5E-23 1.5E-27 208.4 7.5 90 360-452 124-234 (240)
2 3s8s_A Histone-lysine N-methyl 99.7 1.2E-17 4.2E-22 148.3 12.3 98 368-467 4-105 (110)
3 4f25_A Polyadenylate-binding p 99.7 9.7E-18 3.3E-22 148.7 9.2 82 369-451 4-87 (115)
4 4fxv_A ELAV-like protein 1; RN 99.7 1.8E-17 6.2E-22 144.3 9.7 81 365-446 14-98 (99)
5 2lxi_A RNA-binding protein 10; 99.7 1.6E-17 5.6E-22 142.1 6.6 80 370-450 1-86 (91)
6 2dgs_A DAZ-associated protein 99.7 6.1E-17 2.1E-21 138.5 9.6 84 364-449 4-91 (99)
7 1whw_A Hypothetical protein ri 99.7 1.1E-16 3.8E-21 136.7 11.1 84 365-449 3-90 (99)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.5E-17 2.6E-21 133.6 9.5 80 365-445 2-85 (85)
9 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 131.8 9.6 78 370-448 1-82 (83)
10 2cqb_A Peptidyl-prolyl CIS-tra 99.7 8.7E-17 3E-21 138.0 9.0 85 364-449 6-94 (102)
11 2lkz_A RNA-binding protein 5; 99.7 5.9E-17 2E-21 141.2 7.7 81 365-446 4-94 (95)
12 2e5h_A Zinc finger CCHC-type a 99.7 2.6E-16 8.9E-21 132.9 11.2 81 364-445 10-94 (94)
13 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.3E-16 4.4E-21 132.7 8.9 79 368-447 4-86 (87)
14 2cq3_A RNA-binding protein 9; 99.7 3.2E-16 1.1E-20 135.0 11.1 84 365-449 10-95 (103)
15 1x5t_A Splicing factor 3B subu 99.7 1.5E-16 5.3E-21 134.8 8.5 81 368-449 3-88 (96)
16 2dnz_A Probable RNA-binding pr 99.7 2.2E-16 7.5E-21 133.6 9.4 81 368-449 3-87 (95)
17 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.2E-16 1.1E-20 135.0 10.5 83 366-449 11-95 (103)
18 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-16 3.8E-21 137.3 7.6 85 364-449 6-94 (102)
19 2do4_A Squamous cell carcinoma 99.7 3.2E-16 1.1E-20 134.3 9.9 83 366-449 13-98 (100)
20 2x1f_A MRNA 3'-END-processing 99.7 4.6E-16 1.6E-20 132.6 10.8 82 370-452 2-87 (96)
21 1x5u_A Splicing factor 3B subu 99.7 3.1E-16 1E-20 135.2 9.7 83 366-449 11-97 (105)
22 4a8x_A RNA-binding protein wit 99.7 3.7E-16 1.3E-20 129.9 9.7 80 368-448 2-86 (88)
23 2dgo_A Cytotoxic granule-assoc 99.6 4.4E-16 1.5E-20 136.6 10.6 84 366-450 11-98 (115)
24 1oo0_B CG8781-PA, drosophila Y 99.6 3.8E-16 1.3E-20 136.0 10.0 84 365-449 21-108 (110)
25 1x4a_A Splicing factor, argini 99.6 4E-16 1.4E-20 135.9 10.2 83 366-449 18-101 (109)
26 1x4h_A RNA-binding protein 28; 99.6 3.9E-16 1.3E-20 135.6 9.9 84 366-450 11-104 (111)
27 2dgx_A KIAA0430 protein; RRM d 99.6 4.1E-16 1.4E-20 133.7 9.9 81 367-448 6-91 (96)
28 2cq0_A Eukaryotic translation 99.6 3.4E-16 1.2E-20 134.8 9.4 82 367-449 12-97 (103)
29 2cpz_A CUG triplet repeat RNA- 99.6 2.8E-16 9.5E-21 138.1 8.7 82 367-449 22-107 (115)
30 2dgv_A HnRNP M, heterogeneous 99.6 2.5E-16 8.7E-21 132.5 8.1 84 365-449 3-88 (92)
31 3ns6_A Eukaryotic translation 99.6 7.4E-17 2.5E-21 139.8 4.9 80 369-449 5-95 (100)
32 2dnm_A SRP46 splicing factor; 99.6 2.5E-16 8.5E-21 135.7 7.6 84 365-449 8-95 (103)
33 3p5t_L Cleavage and polyadenyl 99.6 8.6E-17 2.9E-21 136.1 4.5 78 371-449 2-85 (90)
34 2cpf_A RNA binding motif prote 99.6 7.1E-16 2.4E-20 131.4 10.1 81 368-449 3-90 (98)
35 2wbr_A GW182, gawky, LD47780P; 99.6 4.9E-16 1.7E-20 136.0 9.3 78 366-446 3-80 (89)
36 1s79_A Lupus LA protein; RRM, 99.6 2.3E-16 7.9E-21 138.8 7.2 78 367-446 8-88 (103)
37 2cqc_A Arginine/serine-rich sp 99.6 7.3E-16 2.5E-20 130.1 10.0 80 366-446 11-94 (95)
38 2ywk_A Putative RNA-binding pr 99.6 4.8E-16 1.7E-20 131.5 8.8 80 366-446 12-94 (95)
39 2dgw_A Probable RNA-binding pr 99.6 1E-15 3.5E-20 129.0 10.5 82 365-449 5-89 (91)
40 1p27_B RNA-binding protein 8A; 99.6 4.7E-16 1.6E-20 134.3 8.7 82 366-448 19-104 (106)
41 2err_A Ataxin-2-binding protei 99.6 4.9E-16 1.7E-20 136.6 8.8 82 366-448 25-108 (109)
42 2dh8_A DAZ-associated protein 99.6 3.9E-16 1.3E-20 134.9 8.0 84 365-450 11-98 (105)
43 3ucg_A Polyadenylate-binding p 99.6 8E-16 2.8E-20 128.4 9.5 77 369-447 5-85 (89)
44 3s7r_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 127.5 10.4 77 366-444 7-87 (87)
45 2d9p_A Polyadenylate-binding p 99.6 4.5E-16 1.6E-20 134.0 8.2 83 367-450 12-96 (103)
46 2cpi_A CCR4-NOT transcription 99.6 5.1E-16 1.7E-20 136.6 8.5 81 367-448 12-102 (111)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 4.7E-16 1.6E-20 134.1 8.0 82 367-449 12-99 (105)
48 1p1t_A Cleavage stimulation fa 99.6 4.9E-16 1.7E-20 133.5 7.9 85 368-453 6-94 (104)
49 2jvr_A Nucleolar protein 3; RN 99.6 8E-16 2.7E-20 138.0 9.6 82 366-448 24-106 (111)
50 2cpy_A RNA-binding protein 12; 99.6 4.9E-16 1.7E-20 137.3 8.0 83 366-450 11-97 (114)
51 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.3E-20 134.2 10.5 82 366-449 21-106 (109)
52 2div_A TRNA selenocysteine ass 99.6 7.3E-16 2.5E-20 131.6 8.7 82 366-448 5-95 (99)
53 2dgp_A Bruno-like 4, RNA bindi 99.6 5.5E-16 1.9E-20 133.9 8.0 84 365-449 8-98 (106)
54 2e5j_A Methenyltetrahydrofolat 99.6 5.2E-16 1.8E-20 132.8 7.7 83 365-449 14-96 (97)
55 1sjq_A Polypyrimidine tract-bi 99.6 4.7E-16 1.6E-20 139.2 7.7 83 366-451 12-96 (105)
56 2cqd_A RNA-binding region cont 99.6 1.6E-15 5.3E-20 133.5 10.7 83 365-449 12-98 (116)
57 2cph_A RNA binding motif prote 99.6 9.7E-16 3.3E-20 132.3 9.1 83 366-449 11-99 (107)
58 1u6f_A Tcubp1, RNA-binding pro 99.6 9.8E-16 3.4E-20 138.6 9.4 84 366-450 38-125 (139)
59 3n9u_C Cleavage and polyadenyl 99.6 1.2E-15 4.1E-20 143.6 10.3 81 368-449 53-139 (156)
60 1nu4_A U1A RNA binding domain; 99.6 9.6E-16 3.3E-20 130.1 8.7 85 367-452 5-94 (97)
61 2la4_A Nuclear and cytoplasmic 99.6 7.3E-16 2.5E-20 132.3 8.0 78 367-447 24-101 (101)
62 2ytc_A PRE-mRNA-splicing facto 99.6 1.8E-15 6E-20 125.5 9.9 77 366-445 8-85 (85)
63 2cpe_A RNA-binding protein EWS 99.6 1.1E-15 3.6E-20 133.8 9.0 83 367-450 12-106 (113)
64 2do0_A HnRNP M, heterogeneous 99.6 1.6E-15 5.6E-20 132.5 10.2 82 366-448 11-95 (114)
65 2khc_A Testis-specific RNP-typ 99.6 9.7E-16 3.3E-20 135.0 8.7 79 366-445 36-118 (118)
66 1x4c_A Splicing factor, argini 99.6 3.1E-15 1.1E-19 130.8 11.8 81 365-449 10-95 (108)
67 1x4b_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 133.6 9.8 79 369-449 26-108 (116)
68 3ulh_A THO complex subunit 4; 99.6 1.5E-15 5E-20 131.4 9.5 80 365-445 24-106 (107)
69 2dng_A Eukaryotic translation 99.6 1.5E-15 5E-20 131.1 9.4 81 366-449 11-95 (103)
70 2cq4_A RNA binding motif prote 99.6 7.5E-16 2.6E-20 135.2 7.5 79 368-448 23-105 (114)
71 2jrs_A RNA-binding protein 39; 99.6 8.6E-16 3E-20 135.2 7.9 81 367-448 23-107 (108)
72 2fy1_A RNA-binding motif prote 99.6 1.6E-15 5.4E-20 135.1 9.5 81 368-449 5-88 (116)
73 1wi8_A EIF-4B, eukaryotic tran 99.6 1.8E-15 6.1E-20 130.8 9.6 80 367-449 12-96 (104)
74 2dgt_A RNA-binding protein 30; 99.6 2.7E-15 9.3E-20 126.9 10.5 80 365-449 5-84 (92)
75 2dnq_A RNA-binding protein 4B; 99.6 1.8E-15 6.1E-20 127.6 9.2 80 365-449 3-82 (90)
76 1wg5_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 132.7 8.4 82 365-448 10-95 (104)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.5E-15 8.6E-20 134.9 10.7 79 365-444 58-140 (140)
78 2cqg_A TDP-43, TAR DNA-binding 99.6 3.2E-15 1.1E-19 128.7 10.8 81 367-450 12-96 (103)
79 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.6E-20 130.3 7.6 82 365-447 10-95 (98)
80 2mss_A Protein (musashi1); RNA 99.6 8.2E-16 2.8E-20 125.0 6.6 71 372-444 1-75 (75)
81 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.1E-20 130.2 8.4 80 365-445 8-99 (99)
82 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.7E-20 131.6 7.6 82 367-449 6-92 (104)
83 2a3j_A U1 small nuclear ribonu 99.6 1.4E-15 4.9E-20 139.2 8.8 86 367-453 26-116 (127)
84 3d2w_A TAR DNA-binding protein 99.6 2E-15 6.7E-20 128.8 9.1 81 365-449 6-86 (89)
85 3ex7_B RNA-binding protein 8A; 99.6 1.3E-15 4.3E-20 135.7 8.1 85 365-450 17-105 (126)
86 3lqv_A PRE-mRNA branch site pr 99.6 1.6E-15 5.5E-20 133.0 8.5 81 367-448 5-86 (115)
87 2j8a_A Histone-lysine N-methyl 99.6 3.5E-15 1.2E-19 139.3 11.0 74 371-445 3-94 (136)
88 2dis_A Unnamed protein product 99.6 1.8E-15 6.2E-20 131.2 8.3 83 367-450 5-95 (109)
89 2kxn_B Transformer-2 protein h 99.6 1.4E-15 4.8E-20 138.4 7.9 82 366-448 42-127 (129)
90 2nlw_A Eukaryotic translation 99.6 1.9E-15 6.6E-20 131.7 8.5 81 368-449 13-102 (105)
91 1whx_A Hypothetical protein ri 99.6 1.3E-15 4.4E-20 134.7 7.3 80 365-447 5-84 (111)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.6 9.7E-16 3.3E-20 132.3 6.3 80 366-448 15-99 (100)
93 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.4E-20 129.5 6.2 79 366-445 11-93 (95)
94 2cq1_A PTB-like protein L; RRM 99.6 3.8E-15 1.3E-19 131.3 10.1 79 367-448 12-92 (101)
95 2cpj_A Non-POU domain-containi 99.6 1.7E-15 5.9E-20 129.7 7.8 81 365-448 10-90 (99)
96 1x4g_A Nucleolysin TIAR; struc 99.6 3E-15 1E-19 130.6 9.4 81 366-449 21-101 (109)
97 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9.8E-16 3.4E-20 124.6 5.9 72 371-444 1-76 (77)
98 2xnq_A Nuclear polyadenylated 99.6 4.7E-15 1.6E-19 128.0 10.3 79 365-448 17-96 (97)
99 1h2v_Z 20 kDa nuclear CAP bind 99.6 4E-15 1.4E-19 137.5 10.4 82 367-449 36-121 (156)
100 2kt5_A RNA and export factor-b 99.6 3.9E-15 1.3E-19 132.7 9.9 83 365-448 30-115 (124)
101 2m2b_A RNA-binding protein 10; 99.6 6.1E-16 2.1E-20 139.8 4.8 80 367-448 20-109 (131)
102 1x5p_A Negative elongation fac 99.6 6.9E-15 2.4E-19 125.8 11.0 78 367-449 12-89 (97)
103 2kn4_A Immunoglobulin G-bindin 99.6 2.2E-15 7.7E-20 138.7 8.5 82 367-449 67-152 (158)
104 1why_A Hypothetical protein ri 99.6 3.5E-15 1.2E-19 127.4 9.0 80 366-448 13-94 (97)
105 2dgu_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 128.1 9.9 81 366-451 7-87 (103)
106 1x4e_A RNA binding motif, sing 99.6 7E-16 2.4E-20 128.2 4.5 77 368-445 3-83 (85)
107 2jwn_A Embryonic polyadenylate 99.6 3.7E-15 1.3E-19 132.3 9.5 79 368-448 34-116 (124)
108 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.7E-20 134.9 6.4 78 368-448 13-93 (102)
109 2fc9_A NCL protein; structure 99.6 5.6E-15 1.9E-19 126.8 10.0 80 365-448 10-92 (101)
110 2ki2_A SS-DNA binding protein 99.6 5.1E-16 1.8E-20 130.3 3.5 77 371-449 2-82 (90)
111 2db1_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 134.7 7.3 80 367-448 14-99 (118)
112 1wez_A HnRNP H', FTP-3, hetero 99.6 2.1E-15 7.2E-20 131.9 6.9 81 365-448 10-93 (102)
113 2hgl_A HNRPF protein, heteroge 99.6 2.1E-15 7.2E-20 139.7 7.1 82 365-448 39-126 (136)
114 2dnp_A RNA-binding protein 14; 99.6 6.2E-15 2.1E-19 124.2 9.3 78 366-448 5-82 (90)
115 3r27_A HnRNP L, heterogeneous 99.6 5.5E-15 1.9E-19 131.3 9.4 81 365-448 16-98 (100)
116 2hvz_A Splicing factor, argini 99.6 1.7E-15 5.9E-20 129.9 5.8 77 371-449 1-77 (101)
117 2ad9_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 136.3 7.9 81 366-449 27-109 (119)
118 2dnn_A RNA-binding protein 12; 99.6 4E-15 1.4E-19 132.8 8.3 77 368-447 14-93 (109)
119 2i2y_A Fusion protein consists 99.6 2.9E-15 1E-19 137.6 7.6 82 365-448 68-149 (150)
120 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.9E-19 124.0 11.3 79 366-449 11-91 (99)
121 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.2E-15 2.1E-19 138.2 9.6 85 366-451 68-156 (165)
122 4f02_A Polyadenylate-binding p 99.6 4.5E-15 1.5E-19 143.5 8.9 83 369-452 102-186 (213)
123 2cqh_A IGF-II mRNA-binding pro 99.6 4.1E-15 1.4E-19 125.8 7.4 80 366-449 4-85 (93)
124 1wex_A Hypothetical protein (r 99.6 4.2E-15 1.4E-19 131.4 7.7 79 367-448 12-92 (104)
125 2krb_A Eukaryotic translation 99.6 2.7E-15 9.4E-20 124.3 6.1 71 370-441 1-80 (81)
126 2jvo_A Nucleolar protein 3; nu 99.6 8.3E-15 2.8E-19 129.1 9.5 79 366-449 27-105 (108)
127 2kvi_A Nuclear polyadenylated 99.6 3.1E-15 1E-19 128.0 6.5 79 367-450 7-86 (96)
128 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-15 4.1E-20 130.9 3.9 81 367-450 14-98 (101)
129 1wel_A RNA-binding protein 12; 99.5 2.2E-15 7.5E-20 134.8 5.0 82 366-449 21-106 (124)
130 2lea_A Serine/arginine-rich sp 99.5 2.6E-15 8.9E-20 137.4 5.6 83 367-450 44-130 (135)
131 1iqt_A AUF1, heterogeneous nuc 99.5 2.2E-15 7.6E-20 122.2 4.6 71 372-444 1-75 (75)
132 1x4f_A Matrin 3; structural ge 99.5 4.5E-15 1.5E-19 134.0 6.7 80 367-449 22-104 (112)
133 1x5o_A RNA binding motif, sing 99.5 9.5E-15 3.3E-19 127.9 8.5 80 367-447 22-112 (114)
134 2lmi_A GRSF-1, G-rich sequence 99.5 2.4E-15 8.1E-20 131.6 4.5 81 366-448 7-93 (107)
135 1fjc_A Nucleolin RBD2, protein 99.5 8.7E-15 3E-19 124.2 7.9 80 367-449 13-93 (96)
136 3q2s_C Cleavage and polyadenyl 99.5 4.5E-15 1.5E-19 147.5 6.8 79 369-448 67-151 (229)
137 1wf0_A TDP-43, TAR DNA-binding 99.5 8.4E-15 2.9E-19 122.9 7.1 78 368-449 3-80 (88)
138 2xs2_A Deleted in azoospermia- 99.5 5.4E-15 1.9E-19 127.1 5.9 81 368-451 7-90 (102)
139 1wg1_A KIAA1579 protein, homol 99.5 1.5E-14 5.3E-19 121.8 8.5 77 368-448 3-79 (88)
140 2cpx_A Hypothetical protein FL 99.5 1E-14 3.5E-19 127.6 7.5 82 367-449 22-107 (115)
141 2e5g_A U6 snRNA-specific termi 99.5 2.2E-14 7.7E-19 122.0 9.3 78 367-449 5-84 (94)
142 4f02_A Polyadenylate-binding p 99.5 2E-14 6.9E-19 138.9 10.0 81 368-449 13-97 (213)
143 1wf1_A RNA-binding protein RAL 99.5 1.4E-14 4.7E-19 126.6 8.0 77 367-448 24-101 (110)
144 2e44_A Insulin-like growth fac 99.5 1.3E-14 4.6E-19 123.1 7.5 81 367-448 12-93 (96)
145 3egn_A RNA-binding protein 40; 99.5 1.4E-14 4.8E-19 132.0 7.8 82 368-450 43-133 (143)
146 2dha_A FLJ20171 protein; RRM d 99.5 7.1E-15 2.4E-19 134.0 5.6 80 367-448 20-106 (123)
147 1l3k_A Heterogeneous nuclear r 99.5 3.7E-14 1.2E-18 132.4 10.2 85 367-453 101-189 (196)
148 2lcw_A RNA-binding protein FUS 99.3 1.1E-15 3.9E-20 134.6 0.0 82 367-449 4-97 (116)
149 2cq2_A Hypothetical protein LO 99.5 2.1E-14 7.1E-19 130.3 8.2 80 367-448 22-107 (114)
150 2fc8_A NCL protein; structure 99.5 3E-14 1E-18 122.1 8.6 81 365-449 10-94 (102)
151 2hgn_A Heterogeneous nuclear r 99.5 7.8E-15 2.7E-19 136.5 4.6 81 367-450 43-126 (139)
152 1fxl_A Paraneoplastic encephal 99.5 5.7E-14 1.9E-18 127.0 10.0 79 370-449 2-84 (167)
153 1b7f_A Protein (SXL-lethal pro 99.5 4.7E-14 1.6E-18 128.3 9.4 80 369-449 2-85 (168)
154 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 135.7 9.6 80 368-448 44-125 (164)
155 3tyt_A Heterogeneous nuclear r 99.5 4.8E-14 1.7E-18 137.4 10.0 79 368-448 2-81 (205)
156 2bz2_A Negative elongation fac 99.5 3E-14 1E-18 128.5 7.7 79 367-450 36-114 (121)
157 2hzc_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 116.8 8.3 72 368-443 4-86 (87)
158 2hgm_A HNRPF protein, heteroge 99.5 1.8E-14 6.2E-19 132.2 5.8 78 367-447 39-121 (126)
159 3md3_A Nuclear and cytoplasmic 99.5 5.1E-14 1.7E-18 127.2 8.3 77 371-448 1-80 (166)
160 3md3_A Nuclear and cytoplasmic 99.5 8.5E-14 2.9E-18 125.7 9.8 79 367-446 84-166 (166)
161 2cjk_A Nuclear polyadenylated 99.5 3.8E-14 1.3E-18 129.1 7.5 78 369-448 86-167 (167)
162 2f3j_A RNA and export factor b 99.5 6.5E-14 2.2E-18 134.1 8.9 83 365-448 83-168 (177)
163 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.7E-18 129.2 9.6 80 367-448 10-93 (196)
164 2adc_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 136.7 8.6 89 357-447 21-110 (229)
165 3beg_B Splicing factor, argini 99.5 4.2E-14 1.4E-18 125.5 6.3 76 368-447 14-94 (115)
166 2dnl_A Cytoplasmic polyadenyla 99.5 1.3E-13 4.5E-18 121.8 8.7 77 366-446 4-87 (114)
167 2qfj_A FBP-interacting repress 99.5 1.3E-13 4.4E-18 130.6 9.0 81 367-448 122-206 (216)
168 2yh0_A Splicing factor U2AF 65 99.4 1.3E-13 4.4E-18 128.9 8.7 82 367-449 111-196 (198)
169 2pe8_A Splicing factor 45; RRM 99.4 2.3E-13 8E-18 120.5 9.9 80 367-446 5-93 (105)
170 2g4b_A Splicing factor U2AF 65 99.4 1.3E-13 4.4E-18 126.2 8.2 76 368-444 92-171 (172)
171 2qfj_A FBP-interacting repress 99.4 1.6E-13 5.6E-18 129.9 8.9 83 368-451 26-112 (216)
172 3pgw_A U1-A; protein-RNA compl 99.4 2.7E-13 9.2E-18 134.9 10.9 83 366-449 5-92 (282)
173 3zzy_A Polypyrimidine tract-bi 99.4 4E-13 1.4E-17 124.5 10.8 78 369-448 27-107 (130)
174 2dit_A HIV TAT specific factor 99.4 3.9E-13 1.3E-17 118.6 10.0 83 366-449 11-104 (112)
175 2e5i_A Heterogeneous nuclear r 99.4 5.6E-13 1.9E-17 122.2 11.1 74 372-448 27-103 (124)
176 2cjk_A Nuclear polyadenylated 99.4 1.9E-13 6.4E-18 124.5 7.9 77 369-448 2-82 (167)
177 2voo_A Lupus LA protein; RNA-b 99.4 3.3E-13 1.1E-17 130.7 10.0 76 369-446 108-186 (193)
178 3sde_A Paraspeckle component 1 99.4 3.8E-13 1.3E-17 134.0 10.2 80 368-448 94-180 (261)
179 3pgw_S U1-70K; protein-RNA com 99.4 3.2E-13 1.1E-17 146.2 10.3 81 368-449 100-184 (437)
180 3nmr_A Cugbp ELAV-like family 99.4 3.3E-13 1.1E-17 123.2 7.9 79 369-448 2-89 (175)
181 3nmr_A Cugbp ELAV-like family 99.4 5.5E-13 1.9E-17 121.7 8.0 76 368-444 93-174 (175)
182 3smz_A Protein raver-1, ribonu 99.4 1E-12 3.5E-17 130.8 10.2 87 367-454 181-271 (284)
183 1b7f_A Protein (SXL-lethal pro 99.4 8.1E-13 2.8E-17 120.1 8.4 76 368-444 87-168 (168)
184 1fje_B Nucleolin RBD12, protei 99.4 8.9E-13 3E-17 121.5 8.7 78 368-448 97-175 (175)
185 1qm9_A Polypyrimidine tract-bi 99.4 4E-13 1.4E-17 126.7 6.4 78 369-448 2-80 (198)
186 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.9E-12 6.7E-17 114.2 10.2 82 365-449 5-92 (100)
187 3pgw_A U1-A; protein-RNA compl 99.3 2.2E-12 7.4E-17 128.3 10.5 77 367-445 204-281 (282)
188 1fxl_A Paraneoplastic encephal 99.3 1.2E-12 4.2E-17 118.2 7.9 76 368-444 86-167 (167)
189 2ghp_A U4/U6 snRNA-associated 99.3 3.5E-12 1.2E-16 127.4 9.6 81 366-448 206-292 (292)
190 2yh0_A Splicing factor U2AF 65 99.3 3.5E-12 1.2E-16 119.2 8.9 77 368-448 2-89 (198)
191 3sde_A Paraspeckle component 1 99.3 3.1E-12 1.1E-16 127.4 9.1 79 366-447 18-96 (261)
192 2g4b_A Splicing factor U2AF 65 99.3 3.7E-12 1.3E-16 116.5 8.8 76 368-447 2-88 (172)
193 1fje_B Nucleolin RBD12, protei 99.3 1.2E-12 4.1E-17 120.6 5.3 83 365-449 8-93 (175)
194 2diu_A KIAA0430 protein; struc 99.3 4.1E-12 1.4E-16 112.6 7.7 77 368-451 6-88 (96)
195 1qm9_A Polypyrimidine tract-bi 99.3 3.2E-12 1.1E-16 120.5 6.8 79 367-447 117-197 (198)
196 3smz_A Protein raver-1, ribonu 99.3 8.3E-12 2.8E-16 124.2 10.0 81 367-448 92-176 (284)
197 2adc_A Polypyrimidine tract-bi 99.3 7.4E-12 2.5E-16 122.2 8.9 79 367-447 148-228 (229)
198 1jmt_A Splicing factor U2AF 35 99.3 5.7E-12 2E-16 111.1 6.7 59 386-444 41-103 (104)
199 3v4m_A Splicing factor U2AF 65 99.3 8.7E-12 3E-16 110.2 7.8 80 368-447 3-97 (105)
200 2ghp_A U4/U6 snRNA-associated 99.3 9.1E-12 3.1E-16 124.4 8.8 81 368-449 115-199 (292)
201 3s6e_A RNA-binding protein 39; 99.2 1.5E-11 5.2E-16 110.9 8.2 80 368-447 5-93 (114)
202 3tyt_A Heterogeneous nuclear r 99.2 8E-12 2.7E-16 121.8 6.5 76 368-444 121-204 (205)
203 3ue2_A Poly(U)-binding-splicin 99.2 1.6E-11 5.5E-16 111.2 7.7 79 368-446 18-108 (118)
204 3tht_A Alkylated DNA repair pr 99.2 6.1E-11 2.1E-15 125.6 9.5 78 365-444 13-96 (345)
205 2dnr_A Synaptojanin-1; RRM dom 98.8 1.7E-08 5.7E-13 88.8 8.6 75 368-447 5-86 (91)
206 3dxb_A Thioredoxin N-terminall 98.7 1.9E-08 6.6E-13 97.6 6.0 64 383-446 141-212 (222)
207 1ufw_A Synaptojanin 2; RNP dom 98.4 2.4E-07 8.2E-12 82.0 6.3 72 367-444 12-92 (95)
208 1owx_A Lupus LA protein, SS-B, 98.4 6.7E-07 2.3E-11 82.1 8.2 76 367-445 15-94 (121)
209 2dhx_A Poly (ADP-ribose) polym 97.2 0.0013 4.6E-08 59.1 8.9 76 367-448 5-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 96.8 0.0029 9.8E-08 57.8 7.7 72 370-444 21-97 (117)
211 1wwh_A Nucleoporin 35, nucleop 96.4 0.0064 2.2E-07 55.8 7.1 62 384-448 36-98 (119)
212 3p3d_A Nucleoporin 53; structu 96.2 0.005 1.7E-07 57.5 5.1 68 375-446 13-98 (132)
213 2rhk_C Cleavage and polyadenyl 95.8 0.0021 7.3E-08 53.7 0.9 24 236-259 15-38 (72)
214 2d9n_A Cleavage and polyadenyl 95.6 0.0047 1.6E-07 52.0 2.3 24 236-259 9-32 (77)
215 1i2t_A HYD protein; four alpha 95.6 0.0071 2.4E-07 49.6 3.1 51 8-61 7-57 (61)
216 2cqe_A KIAA1064 protein; CCCH 95.4 0.008 2.7E-07 53.1 3.2 23 237-259 36-59 (98)
217 2d9m_A Zinc finger CCCH-type d 95.4 0.008 2.7E-07 50.5 2.9 23 237-259 20-42 (69)
218 3d2q_A Muscleblind-like protei 95.1 0.005 1.7E-07 51.0 0.7 22 238-259 7-29 (70)
219 1nmr_A Poly(A)-binding protein 94.9 0.012 4.2E-07 51.1 2.8 52 8-62 29-80 (85)
220 1m9o_A Tristetraproline; Cys3H 94.9 0.014 4.8E-07 48.3 3.1 26 234-259 9-35 (77)
221 2cqe_A KIAA1064 protein; CCCH 94.9 0.0072 2.4E-07 53.4 1.2 24 236-259 12-35 (98)
222 2dyd_A Poly(A)-binding protein 94.6 0.012 4.3E-07 51.1 1.9 52 8-62 28-79 (85)
223 1wey_A Calcipressin 1; structu 94.5 0.07 2.4E-06 48.0 6.6 75 369-446 4-83 (104)
224 2kn4_A Immunoglobulin G-bindin 94.4 0.02 6.7E-07 52.2 3.0 32 400-431 2-35 (158)
225 1m9o_A Tristetraproline; Cys3H 94.4 0.0071 2.4E-07 50.1 0.0 23 237-259 50-73 (77)
226 1ifw_A Polyadenylate-binding p 94.1 0.024 8.1E-07 50.0 2.7 52 8-62 26-79 (92)
227 3d2n_A Muscleblind-like protei 94.0 0.016 5.5E-07 49.9 1.5 22 238-259 10-32 (83)
228 3d2q_A Muscleblind-like protei 94.0 0.013 4.3E-07 48.6 0.7 23 236-259 41-63 (70)
229 3kuj_A Polyadenylate-binding p 93.4 0.053 1.8E-06 47.4 3.6 51 9-62 27-77 (88)
230 2e5s_A Otthump00000018578; ZF- 93.1 0.019 6.5E-07 50.8 0.3 23 236-259 55-77 (98)
231 2rpp_A Muscleblind-like protei 92.8 0.023 7.8E-07 49.6 0.5 21 239-259 19-40 (89)
232 2e5s_A Otthump00000018578; ZF- 92.7 0.012 4.2E-07 52.0 -1.4 22 238-259 21-43 (98)
233 3pq1_A Poly(A) RNA polymerase; 92.7 0.056 1.9E-06 59.6 3.4 56 370-428 53-108 (464)
234 1g9l_A Polyadenylate-binding p 92.7 0.052 1.8E-06 51.3 2.7 51 10-63 74-124 (144)
235 2d9n_A Cleavage and polyadenyl 91.6 0.039 1.3E-06 46.4 0.4 22 237-259 38-60 (77)
236 3d2n_A Muscleblind-like protei 91.3 0.048 1.6E-06 46.9 0.7 23 236-259 42-64 (83)
237 3ctr_A Poly(A)-specific ribonu 91.2 0.22 7.5E-06 44.6 4.8 53 372-430 8-60 (101)
238 2rhk_C Cleavage and polyadenyl 91.1 0.043 1.5E-06 45.8 0.2 22 237-259 44-66 (72)
239 1whv_A Poly(A)-specific ribonu 90.8 0.41 1.4E-05 42.8 6.1 53 371-429 17-69 (100)
240 2i2y_A Fusion protein consists 90.7 0.09 3.1E-06 47.6 1.9 41 407-448 11-52 (150)
241 2rpp_A Muscleblind-like protei 87.2 0.13 4.4E-06 44.9 0.3 23 236-259 50-72 (89)
242 1uw4_A UPF3X; nonsense mediate 81.2 4.3 0.00015 35.3 7.3 66 371-437 2-73 (91)
243 3d45_A Poly(A)-specific ribonu 61.0 16 0.00054 40.4 7.6 58 368-431 438-495 (507)
244 2fc6_A Nuclear, target of EGR1 60.1 1.7 5.7E-05 34.4 -0.2 24 236-259 19-43 (50)
245 2l08_A Regulator of nonsense t 58.6 22 0.00075 31.5 6.6 68 369-437 8-81 (97)
246 3ts2_A Protein LIN-28 homolog 45.5 5 0.00017 37.6 0.4 29 385-417 1-29 (148)
247 2g0c_A ATP-dependent RNA helic 42.4 38 0.0013 27.3 5.2 69 372-445 2-75 (76)
248 2hg7_A Phage-like element PBSX 31.3 10 0.00035 33.8 0.0 20 482-501 67-86 (110)
249 3dve_B Voltage-dependent N-typ 26.8 13 0.00043 25.2 -0.2 14 21-34 1-14 (23)
250 3dvk_B Voltage-dependent R-typ 24.6 15 0.0005 24.9 -0.2 14 21-34 2-15 (23)
251 1t4n_A Ribonuclease III; DSRBD 22.4 32 0.0011 30.1 1.6 13 496-508 59-71 (94)
252 3u9g_A Zinc finger CCCH-type a 21.0 25 0.00087 35.5 0.7 24 236-259 88-115 (229)
253 3gp4_A Transcriptional regulat 20.6 66 0.0023 29.4 3.4 14 519-532 129-142 (142)
254 2rnl_A Amphiregulin; AR, color 20.3 23 0.00079 27.5 0.2 21 238-259 10-30 (50)
255 3u9g_A Zinc finger CCCH-type a 20.2 33 0.0011 34.6 1.3 23 236-259 174-196 (229)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.87 E-value=4.5e-23 Score=208.38 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=72.2
Q ss_pred cccccccCCCCceEEEcCCCCCCC---------CHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC
Q 039864 360 MGLAEKLTSANRQIYLTFPADSTF---------KDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN 430 (666)
Q Consensus 360 mG~~g~~~~~srtIYV~~~ld~~~---------TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln 430 (666)
||+.+..+...++|||+ ++++.+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|+.|++.|+
T Consensus 124 ~~g~gs~~~~~rtLfVg-nL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 124 MGGIGSFRKKNKTLYVG-GIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp -------CCCCCEEEEE-CTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCcCccccCCceeecC-CCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhC
Confidence 67777889999999999 577777 7999999999999999999997 79999999999999999999999
Q ss_pred Ccee------------eCeEEEEeeCccCchhhH
Q 039864 431 PHFI------------CDSRVLVKPYKEKGKIVE 452 (666)
Q Consensus 431 gh~I------------~GR~V~Vk~Ak~K~k~~~ 452 (666)
+..| .|+.|.|+||+++.....
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC-------
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCCHHH
Confidence 9999 999999999988765433
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=148.32 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=82.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+..++|||+ +++++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+||.|.|.+
T Consensus 4 ~p~~~lfV~-nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFA-RLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEE-CCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 567899999 68899999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred CccCchhhHHHHHhhhcCCCCCCC
Q 039864 444 YKEKGKIVEKRQQQFERGNMSPCS 467 (666)
Q Consensus 444 Ak~K~k~~~r~qqq~eRg~fs~~~ 467 (666)
+..+.+..... +....|.+.+..
T Consensus 83 a~~~~~~~~~~-~~~~~g~~~p~~ 105 (110)
T 3s8s_A 83 DIKGQQRMKYY-ELIVNGSYTPQT 105 (110)
T ss_dssp CSTTHHHHHHH-HHHHTSSCCTTT
T ss_pred CCCCcHHHHHH-HHhhcCCCCccc
Confidence 97665443322 333345444433
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=9.7e-18 Score=148.74 Aligned_cols=82 Identities=20% Similarity=0.416 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.+.+|||+ ++++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+||.|.|.++++
T Consensus 4 ~~~~lfV~-nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIK-NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEEC-CCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46789999 68899999999999999999999999998 6799999999999999999999999999999999999988
Q ss_pred Cchhh
Q 039864 447 KGKIV 451 (666)
Q Consensus 447 K~k~~ 451 (666)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=144.29 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=74.0
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+||+|.
T Consensus 14 n~~~~gt~lfV~-nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 14 NLYFQGTNLIVN-YLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp --CCCCSEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334556789999 68899999999999999999999999987 7899999999999999999999999999999999
Q ss_pred EeeCcc
Q 039864 441 VKPYKE 446 (666)
Q Consensus 441 Vk~Ak~ 446 (666)
|++|+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999976
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=142.07 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcC-CCceeeCeEEEEee
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFG-PVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARG-NPHFICDSRVLVKP 443 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG-~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~l-ngh~I~GR~V~Vk~ 443 (666)
+++|||+ ++++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.+ ++..|+||+|.|.+
T Consensus 1 S~~i~v~-nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLR-MLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEE-TCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 5789999 6889999999999999999 8999999988 78999999999999999999986 45679999999999
Q ss_pred CccCchh
Q 039864 444 YKEKGKI 450 (666)
Q Consensus 444 Ak~K~k~ 450 (666)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887643
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.1e-17 Score=138.53 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=77.2
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
+......++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++ ++++.|+|+.|
T Consensus 4 ~~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 4 GSSGSKSNKIFVG-GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CCCCSSCCEEEEE-SCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 3556778999999 68889999999999999999999999987 689999999999999999999 79999999999
Q ss_pred EEeeCccCch
Q 039864 440 LVKPYKEKGK 449 (666)
Q Consensus 440 ~Vk~Ak~K~k 449 (666)
.|++++++..
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999987754
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=136.68 Aligned_cols=84 Identities=24% Similarity=0.434 Sum_probs=77.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|++|.
T Consensus 3 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 3 SGSSGSGRLFVR-NLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCCCSCEEEEEE-CCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345678999999 68889999999999999999999999987 6899999999999999999999999999999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|.+++++..
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999988764
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=7.5e-17 Score=133.57 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=74.2
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 2 ~~~~~~~~l~V~-nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVG-GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEE-CCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEE-CCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 456788999999 68889999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeeCc
Q 039864 441 VKPYK 445 (666)
Q Consensus 441 Vk~Ak 445 (666)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99875
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.2e-16 Score=131.76 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
+.+|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|.|.+++
T Consensus 1 t~~l~V~-nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVG-DLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEE-CCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 3689999 68889999999999999999999999987 669999999999999999999999999999999999998
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 10
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=138.00 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=78.2
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
+......++|||+ ++++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|
T Consensus 6 ~~~~~~~~~l~V~-nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 6 SGMATTKRVLYVG-GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SCSCCCCSCEEEE-SCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCcCCCCCEEEEe-CCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3556788999999 68889999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEeeCccCch
Q 039864 440 LVKPYKEKGK 449 (666)
Q Consensus 440 ~Vk~Ak~K~k 449 (666)
.|.+++++..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2cqb_A 85 RVNLAKPMRI 94 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987653
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=5.9e-17 Score=141.19 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=73.2
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCC--eeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCc----ee
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGP--VQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPH----FI 434 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~--V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh----~I 434 (666)
.....-.||||+ |+++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|
T Consensus 4 ~~~~~m~tlfV~-nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 4 HHHHHMDTIILR-NIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CSSCCCCEEEEE-SCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred ccCCccCEEEEe-CCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 455677899999 68999999999999999995 779999998 78999999999999999999998875 69
Q ss_pred eCeEEEEeeCcc
Q 039864 435 CDSRVLVKPYKE 446 (666)
Q Consensus 435 ~GR~V~Vk~Ak~ 446 (666)
+||+|.|.+|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999874
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=132.89 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=75.1
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
+...+..++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 10 ~~~~~~~~~l~V~-nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 10 GGLAPSKSTVYVS-NLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CSCCCCTTSEEEE-SCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3556788999999 68899999999999999999999999987 679999999999999999999999999999999
Q ss_pred EEeeCc
Q 039864 440 LVKPYK 445 (666)
Q Consensus 440 ~Vk~Ak 445 (666)
.|.+|+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999875
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=132.70 Aligned_cols=79 Identities=13% Similarity=0.294 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 4 ~~~~~l~v~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVG-DLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEe-CCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 457899999 68889999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred CccC
Q 039864 444 YKEK 447 (666)
Q Consensus 444 Ak~K 447 (666)
+++|
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9876
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=134.96 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=77.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|++| .+||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~-nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVS-NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEE-SCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445778999999 68889999999999999999999999988 679999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988764
No 15
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=134.76 Aligned_cols=81 Identities=17% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dV-rI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
...++|||+ ++++++++++|+++|++||+|.+| +|++| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 3 ~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIG-NLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEE-CCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 467899999 688899999999999999999999 99987 679999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987764
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=133.59 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
+.+++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 3 ~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVG-SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 567899999 68889999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987753
No 17
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=134.95 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=76.6
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+.| .+||||||+|.+.++|++|++.|+++.|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVG-NLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEE-SCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEe-CCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35678999999 68889999999999999999999999998 6789999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987653
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=137.31 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=78.2
Q ss_pred cccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 364 EKLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 364 g~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
+......++|||+ +++++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|
T Consensus 6 ~~~~~~~~~l~v~-nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 6 SGMASDEGKLFVG-GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCSEEEEE-SCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3556788999999 68889999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEeeCccCch
Q 039864 440 LVKPYKEKGK 449 (666)
Q Consensus 440 ~Vk~Ak~K~k 449 (666)
.|.+++++..
T Consensus 85 ~v~~a~~~~~ 94 (102)
T 1x5s_A 85 RVDQAGKSSD 94 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=134.31 Aligned_cols=83 Identities=10% Similarity=0.185 Sum_probs=76.5
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFIS-GLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEe-CCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999 68889999999999999999999999987 678999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9988753
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=4.6e-16 Score=132.62 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
+++|||+ ++++++++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|++|++.|++..|+|+.|.|.+++
T Consensus 2 ~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLG-SIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEE-CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999 68889999999999999999999999987 679999999999999999999999999999999999999
Q ss_pred cCchhhH
Q 039864 446 EKGKIVE 452 (666)
Q Consensus 446 ~K~k~~~ 452 (666)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8876543
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=135.25 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=76.9
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVG-GLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEE-CCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34677899999 68899999999999999999999999987 68999999999999999999999999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
.+++++.+
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 22
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=129.89 Aligned_cols=80 Identities=11% Similarity=0.253 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecC-----CcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQ-----KRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~Dk-----SRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
...++|||+ ++++++++++|+++|++||+|.+|+|+.|+ ++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 2 ~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIG-RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEE-CCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 357899999 688999999999999999999999999882 89999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
++++..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=4.4e-16 Score=136.56 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=77.3
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||.|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVG-DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35678899999 68899999999999999999999999987 66899999999999999999999999999999999
Q ss_pred eeCccCchh
Q 039864 442 KPYKEKGKI 450 (666)
Q Consensus 442 k~Ak~K~k~ 450 (666)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999887644
No 24
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=3.8e-16 Score=136.00 Aligned_cols=84 Identities=11% Similarity=0.195 Sum_probs=76.8
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++.+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|.
T Consensus 21 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVT-SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345667899999 68889999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|.+++++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987653
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=135.87 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=76.7
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.....++|||+ ++++++||++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 18 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVG-NLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45677899999 68889999999999999999999999888 78999999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+++.+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=135.61 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=77.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCC------Cceee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGN------PHFIC 435 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~ln------gh~I~ 435 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.++ ++.|+
T Consensus 11 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIR-NLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEE-SCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34668899999 68889999999999999999999999988 689999999999999999999999 99999
Q ss_pred CeEEEEeeCccCchh
Q 039864 436 DSRVLVKPYKEKGKI 450 (666)
Q Consensus 436 GR~V~Vk~Ak~K~k~ 450 (666)
|+.|.|.+++++.+.
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887543
No 27
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=133.68 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVS----NYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLr----e~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
....++|||+ +++++++|++|+ ++|++||+|.+|+|++| ..||||||+|.+.++|++|++.||+..|+||+|.|
T Consensus 6 ~~~~~~l~V~-nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVS-NIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEE-SCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEE-CCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4556899999 688999999999 99999999999999988 34999999999999999999999999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.+++++.
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9998765
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=134.78 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~-nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVT-NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEE-SCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567999999 68889999999999999999999999987 679999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987754
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=2.8e-16 Score=138.14 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 22 ~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIY-HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEE-SCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4567899999 68899999999999999999999999987 678999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987764
No 30
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=2.5e-16 Score=132.45 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=77.1
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|+++.|+|+.|.|+
T Consensus 3 ~~~~~~~~l~V~-nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 3 SGSSGACQIFVR-NLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CSSSSCCEEEEC-SCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999 68899999999999999999999999987 789999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987653
No 31
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=7.4e-17 Score=139.78 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCC------CCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeC-e
Q 039864 369 ANRQIYLTFPADS------TFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICD-S 437 (666)
Q Consensus 369 ~srtIYV~~~ld~------~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~G-R 437 (666)
..++|||+ ++++ ++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+| |
T Consensus 5 ~~~~vfV~-nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVN-GAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEE-SCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEe-CCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 36799999 5788 9999999999999999999999998 689999999999999999999999999999 9
Q ss_pred EEEEeeCccCch
Q 039864 438 RVLVKPYKEKGK 449 (666)
Q Consensus 438 ~V~Vk~Ak~K~k 449 (666)
.|.|.++.++.+
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987654
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=135.65 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=76.8
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 8 ~~~~~~~~l~V~-nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVD-NLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEE-SCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345668999999 68889999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|.+++++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999987653
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=8.6e-17 Score=136.14 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG--~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.+|||+ ++++++||++|+++|++|| .|.+|+|++| ++||||||+|.+.++|++|++.||++.|+||.|.|+++
T Consensus 2 ~~l~V~-nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIG-NLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEE-SCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEe-CCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 579999 6889999999999999999 9999999998 78999999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87653
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.1e-16 Score=131.42 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
...++|||+ +++++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|++|.
T Consensus 3 ~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIK-NLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEE-SCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 567899999 68889999999999999999999999976 3579999999999999999999999999999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|++++++..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987653
No 35
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4.9e-16 Score=135.96 Aligned_cols=78 Identities=8% Similarity=0.123 Sum_probs=73.4
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
....+.-|||+ |+++.+||++|+++|.+||+|.+|+|+. +||||||+|.+.++|++|++.||+..+.||.|+|+.|.
T Consensus 3 ~~~~~~wL~Vg-NL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 3 MAWGSSWLLLK-NLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCCEEEEE-CCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCccceEEEe-CCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45678899999 7999999999999999999999999987 89999999999999999999999999999999999995
Q ss_pred c
Q 039864 446 E 446 (666)
Q Consensus 446 ~ 446 (666)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-16 Score=138.80 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
....++|||+ ++++++|+++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++ ++++.|+|+.|.|++
T Consensus 8 ~~~~~~lfV~-~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIK-GFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEE-CCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEE-CCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3456899999 68899999999999999999999999998 789999999999999999999 799999999999998
Q ss_pred Ccc
Q 039864 444 YKE 446 (666)
Q Consensus 444 Ak~ 446 (666)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-16 Score=130.09 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=74.0
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|++|.|
T Consensus 11 ~~~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVF-GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEE-SCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35667899999 68889999999999999999999999987 67899999999999999999999999999999999
Q ss_pred eeCcc
Q 039864 442 KPYKE 446 (666)
Q Consensus 442 k~Ak~ 446 (666)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=131.47 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=74.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
.....++|||+ ++++.+++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|+
T Consensus 12 ~~~~~~~l~v~-nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVG-NLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEE-CCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 45667899999 68889999999999999999999999988 679999999999999999999999999999999999
Q ss_pred eCcc
Q 039864 443 PYKE 446 (666)
Q Consensus 443 ~Ak~ 446 (666)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8863
No 39
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=129.05 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=75.5
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++++++++|+++|++| .|.+|+|++| ++||||||+|.+.++|++|++ ++++.|+||.|.|
T Consensus 5 ~~~~~~~~l~v~-nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLR-GAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEE-CCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEE-CCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 455678999999 688999999999999999 9999999997 779999999999999999999 8999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
.+++++.+
T Consensus 82 ~~a~~~~~ 89 (91)
T 2dgw_A 82 FREKSGPS 89 (91)
T ss_dssp EEESSCCC
T ss_pred EECCcCCC
Confidence 99987653
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=134.27 Aligned_cols=82 Identities=11% Similarity=0.216 Sum_probs=75.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 19 ~~~~~~~l~V~-nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVT-GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEE-CCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34567899999 68889999999999999999999999987 66999999999999999999999999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.+++++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998765
No 41
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=136.55 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=76.2
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|.|.+
T Consensus 25 ~~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVS-NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEE-SCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEE-CCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999 68889999999999999999999999988 7799999999999999999999999999999999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 42
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=134.86 Aligned_cols=84 Identities=30% Similarity=0.449 Sum_probs=77.1
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+. +++.|+|+.|.
T Consensus 11 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVG-GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCB-SCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 345778999999 68899999999999999999999999997 6789999999999999999999 99999999999
Q ss_pred EeeCccCchh
Q 039864 441 VKPYKEKGKI 450 (666)
Q Consensus 441 Vk~Ak~K~k~ 450 (666)
|++++++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887644
No 43
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=8e-16 Score=128.37 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|+ .++++.|+|+.|.|.++
T Consensus 5 ~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVG-NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEE-SCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 46899999 68889999999999999999999999987 77999999999999999999 88999999999999998
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
+++
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 44
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.1e-15 Score=127.54 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=70.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++. +++.|+|++|.|
T Consensus 7 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVG-GLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEE-CCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 34678899999 68899999999999999999999999987 6799999999999999999977 889999999999
Q ss_pred eeC
Q 039864 442 KPY 444 (666)
Q Consensus 442 k~A 444 (666)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=134.01 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
....++|||+ ++++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVK-NLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEE-CCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4578899999 68889999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred ccCchh
Q 039864 445 KEKGKI 450 (666)
Q Consensus 445 k~K~k~ 450 (666)
+++.+.
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887643
No 46
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.1e-16 Score=136.65 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHH---HHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVS---NYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICD 436 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLr---e~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~G 436 (666)
....++|||+ +++++++|++|+ ++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|
T Consensus 12 ~~~~~~l~V~-nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVV-GLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEE-EECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEE-CCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 4567899999 688999999999 99999999999999987 356999999999999999999999999999
Q ss_pred eEEEEeeCccCc
Q 039864 437 SRVLVKPYKEKG 448 (666)
Q Consensus 437 R~V~Vk~Ak~K~ 448 (666)
+.|.|.+++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=4.7e-16 Score=134.05 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeC---eEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICD---SRVL 440 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~G---R~V~ 440 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVG-MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4568999999 68889999999999999999999999987 669999999999999999999999999998 9999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|++++++.+
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987764
No 48
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=133.48 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++.+++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|.|.+
T Consensus 6 ~~~~~l~V~-nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVG-NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEE-SCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEe-CCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 456899999 68899999999999999999999999987 5699999999999999999999999999999999999
Q ss_pred CccCchhhHH
Q 039864 444 YKEKGKIVEK 453 (666)
Q Consensus 444 Ak~K~k~~~r 453 (666)
++++......
T Consensus 85 a~~~~~~~~~ 94 (104)
T 1p1t_A 85 AASEKNKEEL 94 (104)
T ss_dssp TTCTTHHHHH
T ss_pred CCCccchhhh
Confidence 9887765443
No 49
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=8e-16 Score=138.01 Aligned_cols=82 Identities=13% Similarity=0.004 Sum_probs=73.9
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFG-PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG-~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..+..++|||+ ++++++++++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+||.|.|+++
T Consensus 24 ~p~~~~~l~Vg-nLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 24 LPAKRYRITMK-NLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp -CCCCEEEEEE-CSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEE-CCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44567899999 6899999999999999999 999999986679999999999999999999999999999999999998
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+.+.
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 50
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=137.33 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=75.9
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCe-eEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V-~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++||++|+++|++||.| .+|+|++| ++||||||+|.+.++|++||+. +++.|+||.|.|
T Consensus 11 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHIT-NIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEE-SCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEe-CcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 35667899999 689999999999999999999 99999998 7899999999999999999998 999999999999
Q ss_pred eeCccCchh
Q 039864 442 KPYKEKGKI 450 (666)
Q Consensus 442 k~Ak~K~k~ 450 (666)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2cpy_A 89 HVVTLEDMR 97 (114)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999876533
No 51
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=134.17 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=71.9
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ +++++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.+ ++.|+|+.|.|
T Consensus 21 ~~~~~~~lfV~-nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIG-GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEe-CCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34567899999 68899999999999999999999999987 67999999999999999999995 59999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987754
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=131.56 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=75.5
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCee-EEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeE--
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQ-DVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSR-- 438 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~-dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~-- 438 (666)
....+++|||+ +++++++|++|+++|++||+|. +|+|++| ++||||||+|.+.++|++|++.||++.|.|+.
T Consensus 5 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMG-DLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCSSSSEEEEC-SCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCccEEEEe-CCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 45678999999 6888999999999999999999 9999987 67899999999999999999999999999999
Q ss_pred --EEEeeCccCc
Q 039864 439 --VLVKPYKEKG 448 (666)
Q Consensus 439 --V~Vk~Ak~K~ 448 (666)
|+|.++++..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987654
No 53
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=5.5e-16 Score=133.86 Aligned_cols=84 Identities=12% Similarity=0.242 Sum_probs=76.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCcee---eCe
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFI---CDS 437 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I---~GR 437 (666)
......++|||+ +++++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|++..+ .|+
T Consensus 8 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIG-QIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEE-SCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 445778999999 68889999999999999999999999987 6899999999999999999999999888 899
Q ss_pred EEEEeeCccCch
Q 039864 438 RVLVKPYKEKGK 449 (666)
Q Consensus 438 ~V~Vk~Ak~K~k 449 (666)
+|.|++++++..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987653
No 54
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=132.78 Aligned_cols=83 Identities=11% Similarity=0.154 Sum_probs=76.0
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
......++|||+ ++++++++++|+++|++||.|. ++|+.+++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 14 ~~~~~~~~l~V~-nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVG-NLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEE-CCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEe-CCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345668899999 6889999999999999999997 88888889999999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 55
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.7e-16 Score=139.18 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=74.5
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~Vk~ 443 (666)
.....++|||+ ++++++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.++ +..|+||+|.|.+
T Consensus 12 ~~~~~~~LfV~-nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIR-KLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEEC-SCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45678999999 6899999999999999999999999998 48999999999999999999665 5799999999999
Q ss_pred CccCchhh
Q 039864 444 YKEKGKIV 451 (666)
Q Consensus 444 Ak~K~k~~ 451 (666)
++++....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98776443
No 56
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=133.53 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=75.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ +++++++|++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.+++ .|+|+.|.
T Consensus 12 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVG-GLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEE-CCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEe-CCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 345678999999 68899999999999999999999999987 6899999999999999999999887 89999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|.+++++.+
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=132.26 Aligned_cols=83 Identities=19% Similarity=0.356 Sum_probs=76.3
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-----CCcceEEEEeCCHHHHHHHHHcC-CCceeeCeEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKLILARG-NPHFICDSRV 439 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-----kSRGFGFVTF~~~EsAk~AL~~l-ngh~I~GR~V 439 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.| |++.|.|+.|
T Consensus 11 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVR-NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEE-SCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEe-CCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 45678999999 68889999999999999999999999875 57999999999999999999999 9999999999
Q ss_pred EEeeCccCch
Q 039864 440 LVKPYKEKGK 449 (666)
Q Consensus 440 ~Vk~Ak~K~k 449 (666)
.|.+++++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987754
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=9.8e-16 Score=138.56 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=77.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ +++++++|++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 38 ~~~~~~~l~V~-nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVN-YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEE-SCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34667899999 68899999999999999999999999988 56999999999999999999999999999999999
Q ss_pred eeCccCchh
Q 039864 442 KPYKEKGKI 450 (666)
Q Consensus 442 k~Ak~K~k~ 450 (666)
.+++++.+.
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887644
No 59
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=143.55 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG--~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
...++|||+ ++++++||++|+++|++|| .|.+|+|++| ++||||||+|.+.++|++||+.||++.|+||.|.|
T Consensus 53 ~~~~~lfVg-nLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 53 NRRAAVYVG-SFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ---CEEEEE-CCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 356899999 6899999999999999999 9999999988 78999999999999999999999999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
+++.++..
T Consensus 132 ~~a~~~~~ 139 (156)
T 3n9u_C 132 RPATRQNL 139 (156)
T ss_dssp EECCHHHH
T ss_pred EEcCCCcc
Confidence 99987653
No 60
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=9.6e-16 Score=130.11 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVS----NYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLr----e~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.+.+++|||+ ++++++++++|+ ++|++||.|.+|+|+.. ++||||||+|.+.++|++|++.|++..|+|+.|.|
T Consensus 5 ~~~~~~l~V~-nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYIN-NLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEE-SCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4678999999 688999999999 99999999999999865 68999999999999999999999999999999999
Q ss_pred eeCccCchhhH
Q 039864 442 KPYKEKGKIVE 452 (666)
Q Consensus 442 k~Ak~K~k~~~ 452 (666)
.+++++.+...
T Consensus 84 ~~a~~~~~~~~ 94 (97)
T 1nu4_A 84 QYAKTDSDIIA 94 (97)
T ss_dssp EECSSCCTHHH
T ss_pred EEccCCCcccc
Confidence 99998876544
No 61
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.3e-16 Score=132.28 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
.+..++|||+ ++++++++++|+++|++||.|.+|+|+. +||||||+|.+.++|++|++.||++.|+|++|.|+++++
T Consensus 24 ~~~~~~l~V~-nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIG-NIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEE-SCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEc-CCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4557899999 6888999999999999999999999985 899999999999999999999999999999999999987
Q ss_pred C
Q 039864 447 K 447 (666)
Q Consensus 447 K 447 (666)
|
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 62
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=125.54 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=71.7
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcC-CCceeeCeEEEEeeC
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARG-NPHFICDSRVLVKPY 444 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~l-ngh~I~GR~V~Vk~A 444 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.| +++.|+|++|.|+++
T Consensus 8 ~~~~~~~l~V~-~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 8 EDKTITTLYVG-GLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCSSCCCEEEE-CCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCccEEEEc-CCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45678899999 6888999999999999999999999998 6899999999999999999998 999999999999987
Q ss_pred c
Q 039864 445 K 445 (666)
Q Consensus 445 k 445 (666)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=133.75 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCee--------EEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCcee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQ--------DVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFI 434 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~--------dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I 434 (666)
....++|||+ ++++++++++|+++|++||.|. .|+|+.| ++||||||+|.+.++|++|++.||++.|
T Consensus 12 ~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQ-GLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEE-CCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEc-CCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 4678899999 6889999999999999999999 6999987 7799999999999999999999999999
Q ss_pred eCeEEEEeeCccCchh
Q 039864 435 CDSRVLVKPYKEKGKI 450 (666)
Q Consensus 435 ~GR~V~Vk~Ak~K~k~ 450 (666)
+|+.|.|.+++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887643
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=132.51 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=75.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
.....++|||+ ++++++++++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~-nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVA-NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999 68889999999999999999999999987 679999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
+++...
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=9.7e-16 Score=134.97 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=72.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 36 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIY-HLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEE-CSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34667899999 68889999999999999999999999987 67999999999999999999999999999999999
Q ss_pred eeCc
Q 039864 442 KPYK 445 (666)
Q Consensus 442 k~Ak 445 (666)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=130.77 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=74.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC-----eEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD-----SRV 439 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G-----R~V 439 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|+.| |||||+|.+.++|++||+.||++.|+| +.|
T Consensus 10 ~~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 10 PSRRSENRVVVS-GLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCSCCCEEEEE-SCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 334667899999 68899999999999999999999999985 999999999999999999999999999 999
Q ss_pred EEeeCccCch
Q 039864 440 LVKPYKEKGK 449 (666)
Q Consensus 440 ~Vk~Ak~K~k 449 (666)
.|++++++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999988653
No 67
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=133.59 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++||+. +++.|+|+.|.|+++
T Consensus 26 ~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIG-GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEE-CCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 35899999 68899999999999999999999999987 6799999999999999999999 999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+++.+
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 88764
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.5e-15 Score=131.39 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=74.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++.+++++|+++|++||+|.+|+|++| +++|||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVS-NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 456778999999 68899999999999999999999999988 77999999999999999999999999999999999
Q ss_pred eeCc
Q 039864 442 KPYK 445 (666)
Q Consensus 442 k~Ak 445 (666)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=131.05 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=74.2
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ +++++++|++|+++|++|| |.+|+|++| ++||||||+|.+.++|++|+ .||++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVG-NLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEE-SCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEe-CCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 35667899999 6889999999999999997 999999988 67999999999999999999 88999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987653
No 70
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.5e-16 Score=135.18 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++++++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|++|| .||++.|+|+.|.|++
T Consensus 23 ~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCM-QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEE-SCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 346899999 68899999999999999999999999987 67999999999999999999 8899999999999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
++++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87654
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=8.6e-16 Score=135.22 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++.+++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.+++..|+|++|.|.
T Consensus 23 ~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVG-SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEE-CCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4667899999 67889999999999999999999999987 678999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
++++|.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 72
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=135.14 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...++|||+ ++++++++++|+++|++||.|++|+|+.| +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIG-GLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEE-CCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999 68889999999999999999999999997 78999999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 73
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=130.76 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
....++|||+ ++++++++++|+++|++|| |.+|+|++| ++||||||+|.+.++|++|| .|+++.|+|+.|.|
T Consensus 12 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLG-NLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEE-SCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEe-CCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 4567899999 6889999999999999999 999999987 45999999999999999999 88999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
++++++..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99988754
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=126.91 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=73.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|+ |+||||+|.+.++|++|++.||++.|+|+.|.|+++
T Consensus 5 ~~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 5 SSGKASTKLHVG-NISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCCSSEEEEEE-SCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345678999999 688999999999999999999999996 579999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87754
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=127.57 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=73.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
......++|||+ ++++++++++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|++..|+|++|.|.++
T Consensus 3 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 3 SGSSGMVKLFIG-NLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCSSCCEEEEEE-SCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCCCeEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345678999999 688899999999999999999999996 799999999999999999999999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
+++.+
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87764
No 76
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=132.66 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d-VrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++||++|+++|++||.|.+ |+|++| ++||||||+|.+.++|++||+. +++.|+||.|.
T Consensus 10 ~~~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLR-GLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEE-SCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 344667899999 68999999999999999999998 999887 8899999999999999999998 99999999999
Q ss_pred EeeCccCc
Q 039864 441 VKPYKEKG 448 (666)
Q Consensus 441 Vk~Ak~K~ 448 (666)
|.++.++.
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99886543
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=134.94 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=73.0
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++.+++++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.|+++.|+|++|+
T Consensus 58 ~~~~~~~~l~v~-nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVG-GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEE-CCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEE-eCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 456778999999 68889999999999999999999999987 7899999999999999999999999999999999
Q ss_pred EeeC
Q 039864 441 VKPY 444 (666)
Q Consensus 441 Vk~A 444 (666)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-15 Score=128.67 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++. ++.|+|+.|.|+
T Consensus 12 ~~~~~~l~v~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVL-GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEE-SCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEE-cCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 4567899999 58899999999999999999999999987 6799999999999999999995 789999999999
Q ss_pred eCccCchh
Q 039864 443 PYKEKGKI 450 (666)
Q Consensus 443 ~Ak~K~k~ 450 (666)
++.++.+.
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887643
No 79
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=130.33 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=74.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++++++|+++|++||.|.+|+++.+ ++||||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 10 ~~~~~~~~l~v~-nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 10 SGKPGPTIIKVQ-NMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCSSEEEEEE-SCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345667899999 68899999999999999999999988876 6799999999999999999999999999999999
Q ss_pred EeeCccC
Q 039864 441 VKPYKEK 447 (666)
Q Consensus 441 Vk~Ak~K 447 (666)
|++++.+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998754
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=8.2e-16 Score=124.99 Aligned_cols=71 Identities=31% Similarity=0.442 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
+|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+|++|.|++|
T Consensus 1 ~l~v~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVG-GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEE-CCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEe-cCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999 68899999999999999999999999987 779999999999999999998 7999999999999875
No 81
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=130.16 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=74.0
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeeec----CCcceEEEEeCCHHHHHHHHHcCCCc
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKLILARGNPH 432 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d--------VrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh 432 (666)
......++|||+ ++++++++++|+++|++||.|.+ |+|++| ++||||||+|.+.++|++|++.||+.
T Consensus 8 ~~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQ-GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEE-CCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345678899999 68899999999999999999999 999987 67999999999999999999999999
Q ss_pred eeeCeEEEEeeCc
Q 039864 433 FICDSRVLVKPYK 445 (666)
Q Consensus 433 ~I~GR~V~Vk~Ak 445 (666)
.|+|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 82
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=131.63 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhc-CCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCce-eeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSI-FGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHF-ICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSk-FG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~-I~GR~V~V 441 (666)
....++|||+ ++++++|+++|+++|++ ||+|.+|+|++| ++||||||+|.+.++|++|++.|+++. |+|+.|.|
T Consensus 6 ~~~~~~l~V~-nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVG-DLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEE-CCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEe-CCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4567899999 68889999999999999 999999999988 789999999999999999999999999 99999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
.+++++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99987653
No 83
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=139.17 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVS----NYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLr----e~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
...+++|||+ ++++++++++|+ ++|++||+|.+|.|+.+ ++||||||+|.+.++|.+|++.||+..|.|+.|.|
T Consensus 26 ~~p~~~LfV~-nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLIT-NINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEE-SCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 4557899999 688999999876 69999999999999876 89999999999999999999999999999999999
Q ss_pred eeCccCchhhHH
Q 039864 442 KPYKEKGKIVEK 453 (666)
Q Consensus 442 k~Ak~K~k~~~r 453 (666)
.+++.+.....+
T Consensus 105 ~~a~~~~~~~~~ 116 (127)
T 2a3j_A 105 TFSETPQSQVAE 116 (127)
T ss_dssp EECCCCCHHHHC
T ss_pred EEccCcchhccc
Confidence 999988765443
No 84
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=2e-15 Score=128.84 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=64.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.......+|||+ ++++++||++|+++|++||+|.+|+|++| +||||||+|.+.++|+++.. ..+.++|++|.|+++
T Consensus 6 ~~~~~~~~l~V~-~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVG-RCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEE-SCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEEc
Confidence 345678899999 69999999999999999999999999986 89999999999999985422 245567999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
++|.+
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 88754
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.3e-15 Score=135.71 Aligned_cols=85 Identities=11% Similarity=0.202 Sum_probs=77.5
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++|+++|+++|++||.|.+|+|+.| +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 17 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVT-GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345667899999 68889999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeeCccCchh
Q 039864 441 VKPYKEKGKI 450 (666)
Q Consensus 441 Vk~Ak~K~k~ 450 (666)
|++++++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999877644
No 86
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=1.6e-15 Score=132.98 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
...+++|||+ ++++++++++|+++|++||.|.+|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|.|.+++
T Consensus 5 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIR-NLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3567899999 58899999999999999999999999998 789999999999999999999999999999999999997
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 644
No 87
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.5e-15 Score=139.28 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=66.2
Q ss_pred ceEEEcCCC----CCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCC----HHH----HHHHHH--cCCCc
Q 039864 371 RQIYLTFPA----DSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVY----PET----VKLILA--RGNPH 432 (666)
Q Consensus 371 rtIYV~~~l----d~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~----~Es----Ak~AL~--~lngh 432 (666)
.+|||+ ++ +|.++|++|++||++||+|.+|++++| ++||||||+|.+ ++. |.+|+. .+++.
T Consensus 3 ~kI~Vg-nL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVY-PAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEE-ESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEe-CCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 689999 68 999999999999999999999999999 899999999996 333 889988 78999
Q ss_pred eeeCeEEEEeeCc
Q 039864 433 FICDSRVLVKPYK 445 (666)
Q Consensus 433 ~I~GR~V~Vk~Ak 445 (666)
.|+||+|+|+.-+
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999998643
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=131.23 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCC-eeEEEee-ec----CCcceEEEEeCCHHHHHHHHHcCC--CceeeCeE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGP-VQDVRIP-YQ----QKRMFGFVTFVYPETVKLILARGN--PHFICDSR 438 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~-V~dVrI~-~D----kSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~ 438 (666)
....++|||+ ++++++++++|+++|++||. |.+|+|+ .| ++||||||+|.+.++|++|++.|+ +..|+|+.
T Consensus 5 s~~~~~l~V~-nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIG-GIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEE-CCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEe-CCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 4567899999 68889999999999999999 9999998 55 689999999999999999999996 58999999
Q ss_pred EEEeeCccCchh
Q 039864 439 VLVKPYKEKGKI 450 (666)
Q Consensus 439 V~Vk~Ak~K~k~ 450 (666)
|.|.+++++...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999887654
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=1.4e-15 Score=138.42 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=76.2
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|++..|+|++|.|
T Consensus 42 ~~~~~~~l~V~-nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVF-GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEE-TCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35668899999 68889999999999999999999999987 78999999999999999999999999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
++++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998765
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=131.70 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCC------CHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCe-E
Q 039864 368 SANRQIYLTFPADSTF------KDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDS-R 438 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~------TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR-~ 438 (666)
...++|||+ ++++.+ ++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+ +
T Consensus 13 ~~~~~l~V~-nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVD-NVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEE-SCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEe-CCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 446899999 577888 78999999999999999999955 8899999999999999999999999999999 9
Q ss_pred EEEeeCccCch
Q 039864 439 VLVKPYKEKGK 449 (666)
Q Consensus 439 V~Vk~Ak~K~k 449 (666)
|.|.++.+..+
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999986553
No 91
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=134.75 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...+..++|||+ ++++++++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~~~~l~V~-nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 5 SSGRSKTVILAK-NLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp GTSEEEEEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 344567899999 6889999999999999999999999987 8999999999999999999999999999999999998
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
+.+
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=9.7e-16 Score=132.28 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=70.6
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
.....++|||+ ++++++++++|+++|++|| |.+|+|++| ++||||||+|.+.++|++|+ .|+++.|+|+.|.
T Consensus 15 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLG-NLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEES-CCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEe-CCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 45667999999 6889999999999999999 999999986 47999999999999999999 7899999999999
Q ss_pred EeeCccCc
Q 039864 441 VKPYKEKG 448 (666)
Q Consensus 441 Vk~Ak~K~ 448 (666)
|++++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998765
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1e-15 Score=129.53 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=70.6
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
..+..++|||+ ++++++++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+||+|.|
T Consensus 11 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 11 GKPGPTVIKVQ-NMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp ----CEEEEEE-CCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 34567899999 68899999999999999999999999886 67899999999999999999999999999999999
Q ss_pred eeCc
Q 039864 442 KPYK 445 (666)
Q Consensus 442 k~Ak 445 (666)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9875
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=131.27 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcC--CCceeeCeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARG--NPHFICDSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~l--ngh~I~GR~V~Vk~A 444 (666)
...+++|||+ +++++++|++|+++|++||.|.+|+|+. .||||||+|.+.++|++|++.+ ++..|.||+|.|.++
T Consensus 12 ~~p~~~l~V~-nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIR-KLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEE-SCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 4567899999 6889999999999999999999999998 4999999999999999999965 578899999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+.+.
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8765
No 95
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=129.73 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=74.8
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...+..++|||+ ++++++++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.|+++.|+|++|.|.++
T Consensus 10 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 10 KTFTQRSRLFVG-NLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCCCTTEEEEE-SCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CcCCCCCEEEEe-CCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 345678899999 5888999999999999999999999997 6999999999999999999999999999999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8765
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=130.64 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=75.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.....++|||+ ++++.+++++|+++|++||+|.+|+|+.+ ||||||+|.+.++|++|++.|+++.|+|++|.|.+++
T Consensus 21 ~~~~~~~l~V~-nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 21 SSPKNCTVYCG-GIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCSSCCEEEEE-CCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCcEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 45678899999 68889999999999999999999999984 9999999999999999999999999999999999998
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 97
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.8e-16 Score=124.60 Aligned_cols=72 Identities=25% Similarity=0.397 Sum_probs=68.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.++ +.|+|+.|.|++|
T Consensus 1 ~~l~v~-nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIG-GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEE-SCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999 68889999999999999999999999987 679999999999999999999988 9999999999987
No 98
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=4.7e-15 Score=127.98 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=72.1
Q ss_pred ccCCCCceEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 365 KLTSANRQIYLTFPADS-TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~-~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...+.+++|||+ ++++ ++++++|+++|++||.|.+|+| +||||||+|.+.++|++|++.|++..|+|++|.|.+
T Consensus 17 ~~~~~~~~l~V~-nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIG-NLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEE-SCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEe-CCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456788999999 6888 9999999999999999999999 589999999999999999999999999999999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 99
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=4e-15 Score=137.55 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++||+.|+++.|+|+.|.|.
T Consensus 36 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVG-NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999 68889999999999999999999999988 578999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=3.9e-15 Score=132.68 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=76.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++.+++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVS-NLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEE-SCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 456778899999 68889999999999999999999999987 68999999999999999999999999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.++.++.
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997654
No 101
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-16 Score=139.84 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--EEeeec----CCcceEEEEeCCHHHHHHHHHcCCCc----eeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD--VRIPYQ----QKRMFGFVTFVYPETVKLILARGNPH----FICD 436 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d--VrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh----~I~G 436 (666)
....++|||+ ++++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|.+|+..||++ .|+|
T Consensus 20 ~~~~~~lfV~-nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILR-NLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEEC-SCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4567899999 68999999999999999999976 999998 7899999999999 999999999999 9999
Q ss_pred eEEEEeeCccCc
Q 039864 437 SRVLVKPYKEKG 448 (666)
Q Consensus 437 R~V~Vk~Ak~K~ 448 (666)
|+|.|++++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 102
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=125.80 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
....++|||++ +++|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|++.|+++.|+|++|.|.++++
T Consensus 12 ~~~~~~l~V~n---~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYG---EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEEC---SSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcC---CCCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 45678999995 3799999999999999999999974 899999999999999999999999999999999999987
Q ss_pred Cch
Q 039864 447 KGK 449 (666)
Q Consensus 447 K~k 449 (666)
+..
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 103
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=2.2e-15 Score=138.71 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 67 ~~~~~~l~v~-nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVD-NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEE-SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4557899999 68899999999999999999999999987 789999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9987653
No 104
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=127.40 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=73.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee--CeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC--DSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~--GR~V~Vk~ 443 (666)
....+++|||+ +++++++|++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.||++.|+ |+.|.|.+
T Consensus 13 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 13 KANPTTRLWVG-GLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCCSCEEEE-CCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34567899999 6888999999999999999999999987 4899999999999999999999999999 99999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
++++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98875
No 105
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=4.7e-15 Score=128.13 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=73.7
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.....++|||+ ++++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|+++.|+|+.|.|.+++
T Consensus 7 ~~~~~~~l~V~-nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 7 GMAKVKVLFVR-NLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCCCEEEE-CCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 44667999999 688899999999999999999999995 6899999999999999999999999999999999998
Q ss_pred cCchhh
Q 039864 446 EKGKIV 451 (666)
Q Consensus 446 ~K~k~~ 451 (666)
++....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 876543
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7e-16 Score=128.23 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.++|.+
T Consensus 3 ~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIR-GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEE-SCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 567899999 68899999999999999999999999987 6799999999999999999999999999999998876
Q ss_pred Cc
Q 039864 444 YK 445 (666)
Q Consensus 444 Ak 445 (666)
.+
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.7e-15 Score=132.28 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++++|+++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|+ .|+++.|+|+.|.|.+
T Consensus 34 ~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 34 IDKRSVYVG-NVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHTEEEEE-EECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 346899999 58889999999999999999999999987 77999999999999999999 7899999999999999
Q ss_pred CccCc
Q 039864 444 YKEKG 448 (666)
Q Consensus 444 Ak~K~ 448 (666)
+++..
T Consensus 112 a~~~~ 116 (124)
T 2jwn_A 112 KRTNM 116 (124)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87644
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=134.88 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEEEeeC
Q 039864 368 SANRQIYLTFPADS-TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVLVKPY 444 (666)
Q Consensus 368 ~~srtIYV~~~ld~-~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~Vk~A 444 (666)
..+++|||+ ++++ ++||++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.|+ +..|+||+|.|.++
T Consensus 13 ~p~~~l~V~-nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIM-DFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEE-SCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEe-CCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 457899999 6888 999999999999999999999998 57999999999999999999876 45699999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+.+.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8654
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=126.76 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=72.3
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++++++++|+++|++||.| +|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLS-NLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEE-SCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEe-CCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999 688899999999999999988 56665 78999999999999999999999999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.+++++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9998765
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=5.1e-16 Score=130.34 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=68.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.+ |++|+..||++.|+|+.|.|++|.+
T Consensus 2 ~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVG-NLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEE-EECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEEC-CCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999 58889999999999999999999999987 67999999999999 9999999999999999999999987
Q ss_pred Cch
Q 039864 447 KGK 449 (666)
Q Consensus 447 K~k 449 (666)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 111
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.1e-15 Score=134.67 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~---V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
....++|||+ ++++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++||+ ++++.|+||.|.
T Consensus 14 ~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLR-GLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEE-SCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEe-CCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 4567899999 69999999999999999999 999999988 789999999999999999999 799999999999
Q ss_pred EeeCccCc
Q 039864 441 VKPYKEKG 448 (666)
Q Consensus 441 Vk~Ak~K~ 448 (666)
|.++..+.
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 112
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.1e-15 Score=131.89 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=72.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++++||++|+++|++||. ++|+|++| ++||||||+|.+.++|++||+ +|++.|+||.|.|
T Consensus 10 ~~~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMR-GLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEE-SCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345677899999 68999999999999999995 59999998 789999999999999999995 5999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.++.+..
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887654
No 113
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=2.1e-15 Score=139.71 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=75.1
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSR 438 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~---V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~ 438 (666)
......++|||+ +++|++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++||+ ++++.|+||.
T Consensus 39 ~~~~~~~~lfVg-nLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLR-GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEE-SCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 445667899999 69999999999999999999 899999998 789999999999999999999 8999999999
Q ss_pred EEEeeCccCc
Q 039864 439 VLVKPYKEKG 448 (666)
Q Consensus 439 V~Vk~Ak~K~ 448 (666)
|.|.++.++.
T Consensus 117 i~V~~a~~~e 126 (136)
T 2hgl_A 117 IEVFKSHRTE 126 (136)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECChHH
Confidence 9999986543
No 114
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.2e-15 Score=124.22 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=72.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.....++|||+ ++++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|+++.|+|++|.|.+++
T Consensus 5 ~~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 5 SSGNTWKIFVG-NVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCCSCCEEEE-SCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 35678999999 688899999999999999999999996 5799999999999999999999999999999999998
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 115
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=131.29 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=72.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCc--eeeCeEEEEe
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPH--FICDSRVLVK 442 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh--~I~GR~V~Vk 442 (666)
...+.+++|||+ |+++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.+++. .|.||+|.|.
T Consensus 16 ~~~~ps~~l~V~-NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIR-GLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEe-CCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 345678999999 6889999999999999999999999987 7999999999999999999988765 4889999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
.++.|.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 116
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=129.93 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccCch
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEKGK 449 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K~k 449 (666)
++|||+ ++++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|++.|+++.|+|+.|.|.+++++.+
T Consensus 1 ~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVG-NLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEE-CCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 489999 68889999999999999999999999987 899999999999999999999999999999999999987763
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=136.30 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=73.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~Vk~ 443 (666)
..+.+++|||+ ++++++||++|+++|++||.|++|+|+. .||||||+|++.++|++|++.++ +..|.||+|.|.+
T Consensus 27 ~~~ps~~LfVg-NLp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIR-KLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEE-SCCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34668899999 6889999999999999999999999998 48999999999999999999876 4689999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++++..
T Consensus 104 a~~k~~ 109 (119)
T 2ad9_A 104 SNHKEL 109 (119)
T ss_dssp CSSSSC
T ss_pred ccCCCC
Confidence 987653
No 118
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=132.77 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...++|||+ +++|++||++|+++|++| .|.+|+|++| ++||||||+|.+.++|++|| .++++.|+||.|.|.++
T Consensus 14 ~~~~~v~V~-nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVH-GMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEE-CCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345789999 699999999999999999 8999999988 78999999999999999999 56999999999999998
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 754
No 119
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=2.9e-15 Score=137.58 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=76.0
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
......++|||+ ++++++|+++|+++|++||+|.+|+|+.| +||||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 68 ~~~~~~~~l~V~-nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 68 DSCPLDCKVYVG-NLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSSTTSCEEEEE-SCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred cCCCCCCEEEEe-CCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345678999999 68899999999999999999999999987 7999999999999999999999999999999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 120
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=124.03 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=72.6
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIF--GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkF--G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
.....++|||+ ++++++++++|+++|++| |.|.+|++ .||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVR-NLMLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEE-SCCTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEe-CCCCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999 688899999999999999 99999998 579999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++++.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 121
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=6.2e-15 Score=138.15 Aligned_cols=85 Identities=11% Similarity=0.171 Sum_probs=75.3
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.+.|++||+.||+..|.|+.|.|
T Consensus 68 ~~~~~~~l~V~-nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 68 RSVEGWILFVT-SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCC-CEEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999 68889999999999999999999999987 57999999999999999999999999999999999
Q ss_pred eeCccCchhh
Q 039864 442 KPYKEKGKIV 451 (666)
Q Consensus 442 k~Ak~K~k~~ 451 (666)
.++.++....
T Consensus 147 ~~a~~~~~~~ 156 (165)
T 1rk8_A 147 DWCFVKGPKR 156 (165)
T ss_dssp EESEECC---
T ss_pred EEecCCCCCC
Confidence 9998876544
No 122
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=4.5e-15 Score=143.48 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
..++|||+ ++++.+|+++|+++|++||.|++|+|++| .+||||||+|.+.++|++|++.||++.|+||+|.|++|++
T Consensus 102 ~~~~l~v~-nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIK-NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceEC-CcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45789999 68899999999999999999999999998 6799999999999999999999999999999999999998
Q ss_pred CchhhH
Q 039864 447 KGKIVE 452 (666)
Q Consensus 447 K~k~~~ 452 (666)
|.+...
T Consensus 181 ~~~~~~ 186 (213)
T 4f02_A 181 RKEREA 186 (213)
T ss_dssp HHHHHH
T ss_pred Ccccch
Confidence 765443
No 123
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.1e-15 Score=125.83 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=71.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCC-eeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCC-ceeeCeEEEEee
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGP-VQDVRIPYQQKRMFGFVTFVYPETVKLILARGNP-HFICDSRVLVKP 443 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~-V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lng-h~I~GR~V~Vk~ 443 (666)
.....++|||+ ++++++||++|+++|++||. |..+.|+ +||||||+|.+.++|++|++.||+ +.|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIG-NLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEE-CCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEe-CCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 34677899999 68899999999999999999 6666664 699999999999999999999999 999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++++..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987654
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.2e-15 Score=131.44 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~Vk~A 444 (666)
.+.+++|||+ +++++++|++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|+ +..|+||+|.|.++
T Consensus 12 ~~p~~~l~V~-nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVR-GLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEE-SCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4567899999 6889999999999999999999999987 69999999999999999999765 45699999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
+++.
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 8765
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=124.32 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=65.2
Q ss_pred CceEEEcCCCCCCC------CHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCe-EEE
Q 039864 370 NRQIYLTFPADSTF------KDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDS-RVL 440 (666)
Q Consensus 370 srtIYV~~~ld~~~------TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR-~V~ 440 (666)
+++|||+ ++++.+ ++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|| +|.
T Consensus 1 ~~~l~V~-nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVD-NVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEE-SCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEe-CCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 4789999 567788 77999999999999999999865 8899999999999999999999999999999 887
Q ss_pred E
Q 039864 441 V 441 (666)
Q Consensus 441 V 441 (666)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=8.3e-15 Score=129.14 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=72.5
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.....++|||+ ++++++++++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.+++
T Consensus 27 ~~~~~~~l~V~-nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 27 GELSNTRLFVR-PFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp -CCSCSEEEEC-SSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999 688999999999999999999999997 7999999999999999999999999999999999998
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
++.+
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7764
No 127
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.1e-15 Score=128.01 Aligned_cols=79 Identities=16% Similarity=0.386 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADS-TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~-~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.+..++|||+ ++++ ++++++|+++|++||+|.+|+| +||||||+|.+.++|++|++.|++..|.|++|.|.+++
T Consensus 7 ~~~~~~l~V~-nlp~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIG-NLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEE-SSTTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEe-CCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 4678899999 6888 9999999999999999999999 47999999999999999999999999999999999998
Q ss_pred cCchh
Q 039864 446 EKGKI 450 (666)
Q Consensus 446 ~K~k~ 450 (666)
++.+.
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76543
No 128
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-15 Score=130.90 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++|+++|+++|++||.|.+ +++.| ++||||||+|.+.++|++|++ ||++.|.|+.|.|.
T Consensus 14 ~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIG-NLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEE-CCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3467899999 68899999999999999999998 66665 889999999999999999999 89999999999999
Q ss_pred eCccCchh
Q 039864 443 PYKEKGKI 450 (666)
Q Consensus 443 ~Ak~K~k~ 450 (666)
+++++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99887643
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-15 Score=134.78 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=73.1
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
.....++|||+ ++++++||++|+++|++||.|.+|.++.+ ++||||||+|.+.++|++||+ ||++.|+||.|.|
T Consensus 21 ~~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLK-GLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEE-CCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEe-CCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34567899999 68999999999999999999999666554 789999999999999999999 8999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (124)
T 1wel_A 99 HPITKKGM 106 (124)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99987653
No 130
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=2.6e-15 Score=137.43 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|++|.|.
T Consensus 44 ~~~~~~l~V~-nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVD-NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEE-CCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3457899999 68889999999999999999999999987 789999999999999999999999999999999999
Q ss_pred eCccCchh
Q 039864 443 PYKEKGKI 450 (666)
Q Consensus 443 ~Ak~K~k~ 450 (666)
+++++...
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 131
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.2e-15 Score=122.18 Aligned_cols=71 Identities=28% Similarity=0.499 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
+|||+ ++++++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++. +++.|+|+.|.|++|
T Consensus 1 ~l~v~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVG-GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEES-CCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 68999 68899999999999999999999999987 7799999999999999999997 899999999999875
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.5e-15 Score=134.04 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC--CceeeCeEEEEee
Q 039864 367 TSANRQIYLTFPADST-FKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN--PHFICDSRVLVKP 443 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~-~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln--gh~I~GR~V~Vk~ 443 (666)
...+++|||+ +++++ ++|++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++.|+ +..|+||+|.|.+
T Consensus 22 ~~p~~~l~V~-NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLS-NLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEE-SCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEe-CCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3568899999 68887 99999999999999999999986 79999999999999999999764 5679999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++.+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 987653
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.5e-15 Score=127.89 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCcee--------e
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFI--------C 435 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I--------~ 435 (666)
....++|||+ ++++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..| .
T Consensus 22 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYIS-NLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEE-SCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999 68889999999999999999999999998 6799999999999999999999999999 5
Q ss_pred CeEEEEeeCccC
Q 039864 436 DSRVLVKPYKEK 447 (666)
Q Consensus 436 GR~V~Vk~Ak~K 447 (666)
++.|.|+++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998865
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-15 Score=131.57 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=74.4
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~---V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
.....++|||+ ++++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++||+ ++++.|+||.|
T Consensus 7 ~~~~~~~l~V~-nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQ-GLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEE-CCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEe-CCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34567899999 68999999999999999998 999999988 789999999999999999999 79999999999
Q ss_pred EEeeCccCc
Q 039864 440 LVKPYKEKG 448 (666)
Q Consensus 440 ~Vk~Ak~K~ 448 (666)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=124.22 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
....++|||+ ++++.+++++|+++|++||.|..| ... ++||||||+|.+.++|++|++.|+++.|+|+.|.|.+++
T Consensus 13 ~~~~~~l~V~-nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAK-NLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEE-SCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4567899999 688999999999999999999877 222 789999999999999999999999999999999999998
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 136
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=4.5e-15 Score=147.47 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG--~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
..++|||+ ++++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+||.|.|+
T Consensus 67 ~~~~lfVg-nL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIG-NLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEE-SCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEe-CCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 57799999 6899999999999999999 9999999998 789999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
+++++.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998654
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.4e-15 Score=122.93 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K 447 (666)
..+++|||+ +++++++|++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. .+.+.|++|.|.+++++
T Consensus 3 ~~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVG-RCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEE-SCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 457999999 68899999999999999999999999986 899999999999999876443 56779999999999877
Q ss_pred ch
Q 039864 448 GK 449 (666)
Q Consensus 448 ~k 449 (666)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=5.4e-15 Score=127.05 Aligned_cols=81 Identities=17% Similarity=0.388 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
...++|||+ ++++++++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|++|++ +++.|+|+.|.|.++
T Consensus 7 ~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVG-GIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEE-CCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999 68899999999999999999999999998 688999999999999999998 899999999999999
Q ss_pred ccCchhh
Q 039864 445 KEKGKIV 451 (666)
Q Consensus 445 k~K~k~~ 451 (666)
.++....
T Consensus 84 ~~~~~~~ 90 (102)
T 2xs2_A 84 IRKQNLS 90 (102)
T ss_dssp EECC---
T ss_pred CcCcchh
Confidence 8776543
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.5e-14 Score=121.78 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K 447 (666)
+..++|||+ +++++++|++|+++|++| +|.+|+|+ ++||||||+|.+.++|++|++.||+..|+|++|.|.++..+
T Consensus 3 ~~~~~l~V~-nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVK-NLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEE-SCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 567899999 688999999999999999 99999996 58999999999999999999999999999999999998654
Q ss_pred c
Q 039864 448 G 448 (666)
Q Consensus 448 ~ 448 (666)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=127.62 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCe----eEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPV----QDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V----~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++|+++|+++|++||.| ..++++..++||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~-nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLK-NLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEE-CCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467899999 688999999999999999999 45555544889999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987654
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=121.95 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
....++|||+ +++++++|++|+++|++||+|.+| +.| ..+ ||||+|.+.++|++|++ |+++.|+|+.|.|+++
T Consensus 5 ~~~~~~l~V~-nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVS-GFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEE-CCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred cCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 4567899999 688999999999999999999998 444 233 99999999999999999 8999999999999998
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76653
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.53 E-value=2e-14 Score=138.92 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 13 ~p~~tlfVg-nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVG-DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 346899999 68899999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876553
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.4e-14 Score=126.59 Aligned_cols=77 Identities=17% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADST-FKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~-~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
....++|||+ +++++ +++++|+++|++||+|.+|+| +||||||+|.+.++|++|++.|+++.|+|+.|.|.+++
T Consensus 24 ~~~~~~l~V~-nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIG-NLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TTCSSEEEEC-SCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCCcEEEEe-CCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3456899999 68888 999999999999999999999 68999999999999999999999999999999999997
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=123.07 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEE-eeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVR-IPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVr-I~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
....++|||+ ++++++++++|+++|++||+|.+|+ |++|+..|.|||+|.+.++|++|++.||++.|+|+.|.|+++.
T Consensus 12 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIR-NIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEE-EECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEE-cCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3457899999 6889999999999999999999995 8888666779999999999999999999999999999999998
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=132.04 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD--------VRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSR 438 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d--------VrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~ 438 (666)
..+++|||+ ++++++|+++|+++|++||.|.. |++... ++||||||+|.+.++|.+|++.||+..|.|+.
T Consensus 43 ~~~~~l~V~-nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVK-NLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEE-EECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456899999 68899999999999999999976 444444 89999999999999999999999999999999
Q ss_pred EEEeeCccCchh
Q 039864 439 VLVKPYKEKGKI 450 (666)
Q Consensus 439 V~Vk~Ak~K~k~ 450 (666)
|.|.+++.+...
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999775543
No 146
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.1e-15 Score=134.02 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCe----eEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPV----QDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V----~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
....++|||+ +++|++||++|+++|++||+| .+|+|++| ++||||||+|.+.++|++||+. +++.|.||.|
T Consensus 20 ~~~~~~v~V~-nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMR-GLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEEC-SCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999 699999999999999999986 79999987 8899999999999999999998 9999999999
Q ss_pred EEeeCccCc
Q 039864 440 LVKPYKEKG 448 (666)
Q Consensus 440 ~Vk~Ak~K~ 448 (666)
.|..+.++.
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999886543
No 147
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=3.7e-14 Score=132.44 Aligned_cols=85 Identities=20% Similarity=0.359 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++|+++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|++. +++.|+|+.|.|+
T Consensus 101 ~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 101 HLTVKKIFVG-GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp --CCSEEEEE-CCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCCcceEEEe-CCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3456899999 68889999999999999999999999987 6799999999999999999998 8999999999999
Q ss_pred eCccCchhhHH
Q 039864 443 PYKEKGKIVEK 453 (666)
Q Consensus 443 ~Ak~K~k~~~r 453 (666)
++.++.+....
T Consensus 179 ~a~~k~~~~~~ 189 (196)
T 1l3k_A 179 KALSKQEMASA 189 (196)
T ss_dssp ECC--------
T ss_pred ecCChhHhccc
Confidence 99988766543
No 148
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-15 Score=134.64 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeeec----CCcceEEEEeCCHHHHHHHHHcCCCcee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFI 434 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~d--------VrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I 434 (666)
....++|||+ ++++++++++|+++|++||.|.+ |+|++| ++||||||+|.+.++|++|++.||+..|
T Consensus 4 ~~~~~~l~V~-nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQ-GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3567899999 68899999999999999999999 999887 7799999999999999999999999999
Q ss_pred eCeEEEEeeCccCch
Q 039864 435 CDSRVLVKPYKEKGK 449 (666)
Q Consensus 435 ~GR~V~Vk~Ak~K~k 449 (666)
+|+.|.|.+++++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987654
No 149
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=130.33 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=71.3
Q ss_pred CCCCceEEEc-CCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCcee-----eCeEEE
Q 039864 367 TSANRQIYLT-FPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFI-----CDSRVL 440 (666)
Q Consensus 367 ~~~srtIYV~-~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I-----~GR~V~ 440 (666)
...+++|||. ++++++++|++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.||++.| .|+.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3457889994 16899999999999999999999999987 689999999999999999999999998 799999
Q ss_pred EeeCccCc
Q 039864 441 VKPYKEKG 448 (666)
Q Consensus 441 Vk~Ak~K~ 448 (666)
|..++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99886543
No 150
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=122.11 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=71.7
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
......++|||+ ++++++++++|+++|++|+ +|+|++| ++||||||+|.+.++|++||+.|+++.|+|+.|.
T Consensus 10 ~~~~~~~~l~V~-nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVK-GLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEE-CCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEe-CCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345678999999 6889999999999999885 5667665 6789999999999999999999999999999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|.+++++.+
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999988764
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=7.8e-15 Score=136.48 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
....++|||+ ++++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|| .+|++.|+||.|.|.+
T Consensus 43 ~~~~~~lfV~-nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMR-GLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECC-SCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 3556899999 7999999999999999999 779999998 88999999999999999999 6799999999999999
Q ss_pred CccCchh
Q 039864 444 YKEKGKI 450 (666)
Q Consensus 444 Ak~K~k~ 450 (666)
+.++...
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8876543
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=5.7e-14 Score=127.01 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=73.4
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
+++|||+ +++++++|++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+++..|.|+.|.|.++.
T Consensus 2 ~~~l~v~-nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVN-YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEc-CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 6899999 68889999999999999999999999987 678999999999999999999999999999999999998
Q ss_pred cCch
Q 039864 446 EKGK 449 (666)
Q Consensus 446 ~K~k 449 (666)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7653
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=4.7e-14 Score=128.31 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.+++|||+ ++++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+++..|.|++|.|.++
T Consensus 2 ~~~~l~v~-nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVN-YLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEE-CCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEe-CCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 46899999 68889999999999999999999999987 57899999999999999999989999999999999999
Q ss_pred ccCch
Q 039864 445 KEKGK 449 (666)
Q Consensus 445 k~K~k 449 (666)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87653
No 154
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=4.4e-14 Score=135.71 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC--eEEEEeeCc
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD--SRVLVKPYK 445 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G--R~V~Vk~Ak 445 (666)
....+|||+ ++++.+||++|+++|++||+|++|+|+.+++||||||+|.+.++|++|++.||+..|.| ++|+|.+++
T Consensus 44 s~vl~l~Vg-NL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVE-NLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEEC-SCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CceEEEEEe-CcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 345679999 68899999999999999999999999866678999999999999999999999999966 999999998
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 864
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=4.8e-14 Score=137.39 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCC-CCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 368 SANRQIYLTFPAD-STFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 368 ~~srtIYV~~~ld-~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
..+++|||+ +++ +++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++|++.||+..|.||.|.|.+++.
T Consensus 2 ~~~~~l~V~-nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVY-GLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEE-CCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEe-CCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 357899999 577 89999999999999999999999986 689999999999999999999999999999999999875
Q ss_pred Cc
Q 039864 447 KG 448 (666)
Q Consensus 447 K~ 448 (666)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 156
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=3e-14 Score=128.51 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
....++|||++ +++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 36 ~~~~~~lfVgn---l~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYG---EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEEC---SSCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCEEEEcC---CCCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45678999995 4699999999999999999999985 899999999999999999999999999999999999987
Q ss_pred Cchh
Q 039864 447 KGKI 450 (666)
Q Consensus 447 K~k~ 450 (666)
+...
T Consensus 111 ~~~~ 114 (121)
T 2bz2_A 111 QPML 114 (121)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7543
No 157
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=5.3e-14 Score=116.83 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIF----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD 436 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkF----G-------~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G 436 (666)
...++|||+ ++++++++++|+++|++| | +|.+|+|+. .||||||+|.+.++|++|+ .||++.|+|
T Consensus 4 ~~~~~l~V~-nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVG-NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEE-SCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 567899999 688999999999999999 8 999999987 5999999999999999999 899999999
Q ss_pred eEEEEee
Q 039864 437 SRVLVKP 443 (666)
Q Consensus 437 R~V~Vk~ 443 (666)
+.|.|++
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=1.8e-14 Score=132.24 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCee--EEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQ--DVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~--dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
....++|||+ +++|++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++||+. ++..|+||.|.|
T Consensus 39 ~~~~~~lfVg-nLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLR-GLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEE-CCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456899999 699999999999999999 676 9999988 8899999999999999999987 779999999999
Q ss_pred eeCccC
Q 039864 442 KPYKEK 447 (666)
Q Consensus 442 k~Ak~K 447 (666)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.1e-14 Score=127.23 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccC
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K 447 (666)
|+|||+ ++++++|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|++.+++..|.|+.|.|.++.++
T Consensus 1 R~l~V~-nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVG-NLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEE-EEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEEC-CCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999 57889999999999999999999999988 78999999999999999999999999999999999998765
Q ss_pred c
Q 039864 448 G 448 (666)
Q Consensus 448 ~ 448 (666)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=8.5e-14 Score=125.74 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++.+++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|++.||+..|+|++|.|.
T Consensus 84 ~~~~~~l~v~-nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVG-DLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEE-SCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEEC-CCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4567899999 68889999999999999999999999987 779999999999999999999999999999999999
Q ss_pred eCcc
Q 039864 443 PYKE 446 (666)
Q Consensus 443 ~Ak~ 446 (666)
+|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9864
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=3.8e-14 Score=129.12 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
..++|||+ ++++++++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|++ +++..|+|++|.|+++
T Consensus 86 ~~~~l~V~-nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVG-GIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEE-EECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEEC-CCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 35689999 57889999999999999999999999987 789999999999999999998 6999999999999999
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
.+|.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8863
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=6.5e-14 Score=134.12 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=76.4
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++.+++++|+++|++||+|++|.|++| +++|||||+|.+.++|++|++.+++..|+|+.|.|
T Consensus 83 ~~~~~~~~l~V~-nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVS-NLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEE-CCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345677899999 68899999999999999999999999987 78999999999999999999999999999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.++....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987654
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.1e-13 Score=129.24 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++||++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++. +++.|.|+.|.|.
T Consensus 10 ~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIG-GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 4567899999 68889999999999999999999999987 5799999999999999999988 9999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
++.++.
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987654
No 164
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=6.7e-14 Score=136.66 Aligned_cols=89 Identities=13% Similarity=0.246 Sum_probs=79.6
Q ss_pred hhhcccccccCCCCceEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee
Q 039864 357 FLAMGLAEKLTSANRQIYLTFPADS-TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC 435 (666)
Q Consensus 357 f~amG~~g~~~~~srtIYV~~~ld~-~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~ 435 (666)
...|+..+...+.+++|||+ ++++ ++++++|+++|++||+|.+|+|++|+ ||||||+|.+.++|++|++.+++..|.
T Consensus 21 ~g~~~~p~~~~~~~~~l~V~-nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 21 MGRIAIPGLAGAGNSVLLVS-NLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp -CCCCCGGGGCCCCSEEEEE-SCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred ccCcCCCCCCCCCCCEEEEe-CCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 33466666778889999999 5666 99999999999999999999999974 899999999999999999988999999
Q ss_pred CeEEEEeeCccC
Q 039864 436 DSRVLVKPYKEK 447 (666)
Q Consensus 436 GR~V~Vk~Ak~K 447 (666)
|+.|.|.+++++
T Consensus 99 g~~l~v~~a~~~ 110 (229)
T 2adc_A 99 GKPIRITLSKHQ 110 (229)
T ss_dssp SSBCEEECCSCC
T ss_pred CeEEEEEEecCc
Confidence 999999998765
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=4.2e-14 Score=125.51 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeE-----EEEe
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSR-----VLVK 442 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~-----V~Vk 442 (666)
...++|||+ +++++++|++|+++|++||+|.+|.|+.| |||||+|.+.++|++||+.||+..|+|+. |.|+
T Consensus 14 r~~~~l~V~-nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVS-GLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEE-ECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 567899999 68899999999999999999999999875 99999999999999999999999999998 7777
Q ss_pred eCccC
Q 039864 443 PYKEK 447 (666)
Q Consensus 443 ~Ak~K 447 (666)
.+.++
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76654
No 166
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=121.76 Aligned_cols=77 Identities=16% Similarity=0.287 Sum_probs=66.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKLILARGNPHFICDSR 438 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~ 438 (666)
....+++|||+ ++++++||++|+++|++||+|. ++++.+ ++||||||+|.+.++|++||+.| +.++|+.
T Consensus 4 ~~~~~~~lfVg-nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~ 79 (114)
T 2dnl_A 4 GSSGSRKVFVG-GLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKL 79 (114)
T ss_dssp SSSCCCCEEEE-CCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEE
T ss_pred CCCCCCEEEEc-CCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcE
Confidence 34568999999 6889999999999999999999 888876 46999999999999999999997 4588888
Q ss_pred EEEeeCcc
Q 039864 439 VLVKPYKE 446 (666)
Q Consensus 439 V~Vk~Ak~ 446 (666)
+.|..+.+
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 88876543
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=1.3e-13 Score=130.61 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++++++++|+++|++||.|++|+|+.| +++|||||+|.+.++|.+|++.||+..|+|+.|.|.
T Consensus 122 ~~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 122 ARAFNRIYVA-SVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp HTTSCEEEEE-CCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred cCCCcEEEEe-CCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 3567899999 68889999999999999999999999987 669999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
+++++.
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 998764
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=1.3e-13 Score=128.93 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++.+++++|+++|++||.|.+|+|++| ++||||||+|.+.++|.+|++.|++..|+|+.|.|.
T Consensus 111 ~~~~~~l~v~-nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 111 PDSAHKLFIG-GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SCCCCEEEEE-CCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567899999 68889999999999999999999999987 569999999999999999999999999999999999
Q ss_pred eCccCch
Q 039864 443 PYKEKGK 449 (666)
Q Consensus 443 ~Ak~K~k 449 (666)
+++++.+
T Consensus 190 ~a~~~~~ 196 (198)
T 2yh0_A 190 RASVGAK 196 (198)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9988754
No 169
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=2.3e-13 Score=120.45 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCC----CCCHHHHHHHhhcCCCeeEEEeeec-----CCcceEEEEeCCHHHHHHHHHcCCCceeeCe
Q 039864 367 TSANRQIYLTFPADS----TFKDEDVSNYFSIFGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKLILARGNPHFICDS 437 (666)
Q Consensus 367 ~~~srtIYV~~~ld~----~~TEedLre~FSkFG~V~dVrI~~D-----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR 437 (666)
...++.|||.+..+. +-++++|++.|++||+|++|+|+.| ++||||||+|.+.++|.+|++.||+..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 356789999854321 3478999999999999999999986 5799999999999999999999999999999
Q ss_pred EEEEeeCcc
Q 039864 438 RVLVKPYKE 446 (666)
Q Consensus 438 ~V~Vk~Ak~ 446 (666)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=1.3e-13 Score=126.15 Aligned_cols=76 Identities=16% Similarity=0.333 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++.+++++|+++|++||+|.+|+|++| ++||||||+|.+.++|.+|++.||++.|+|++|.|++
T Consensus 92 ~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIG-GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEE-CCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEE-cCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 447899999 68889999999999999999999999987 5699999999999999999999999999999999998
Q ss_pred C
Q 039864 444 Y 444 (666)
Q Consensus 444 A 444 (666)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=1.6e-13 Score=129.92 Aligned_cols=83 Identities=18% Similarity=0.421 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.+++..|.|+.|.|.+
T Consensus 26 ~~~~~l~V~-nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVG-SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEE-CCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEE-CCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 457899999 68889999999999999999999999987 6899999999999999999998899999999999999
Q ss_pred CccCchhh
Q 039864 444 YKEKGKIV 451 (666)
Q Consensus 444 Ak~K~k~~ 451 (666)
+..+....
T Consensus 105 ~~~~~~~~ 112 (216)
T 2qfj_A 105 PSNIGQAQ 112 (216)
T ss_dssp CSCCGGGH
T ss_pred CCCccccc
Confidence 87766443
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=2.7e-13 Score=134.85 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=76.2
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVS----NYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLr----e~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
....+++|||+ ++++++||++|+ ++|++||.|.+|+|+++ ++||||||+|.+.++|++|++.||+..|.|+.|.
T Consensus 5 ~~~~~~~l~V~-nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYIN-NLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEe-CCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 45678999999 688999999977 89999999999999987 8999999999999999999999999999999999
Q ss_pred EeeCccCch
Q 039864 441 VKPYKEKGK 449 (666)
Q Consensus 441 Vk~Ak~K~k 449 (666)
|.+++.+..
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999976554
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=4e-13 Score=124.52 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcce-EEEEeCCHHHHHHHHHcCCCceeeC--eEEEEeeCc
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMF-GFVTFVYPETVKLILARGNPHFICD--SRVLVKPYK 445 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGF-GFVTF~~~EsAk~AL~~lngh~I~G--R~V~Vk~Ak 445 (666)
.--.|||+ |+.+.+||++|+++|++||+|.+|+|+.+ +||| |||+|.+.++|++|++.||+..|.| ++|+|.+++
T Consensus 27 ~VL~I~V~-NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVE-NLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEE-SCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEEC-CCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 34568898 68899999999999999999999998764 6788 9999999999999999999999999 999999998
Q ss_pred cCc
Q 039864 446 EKG 448 (666)
Q Consensus 446 ~K~ 448 (666)
++.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 764
No 174
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.9e-13 Score=118.58 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=70.2
Q ss_pred cCCCCceEEEcCCCCCCC----------CHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCcee
Q 039864 366 LTSANRQIYLTFPADSTF----------KDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFI 434 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~----------TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I 434 (666)
....+++|+|.+..+... ++++|+++|++||+|.+|.| .| .+||||||+|.+.++|++|++.||++.|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 346688999985432211 26899999999999999966 56 7899999999999999999999999999
Q ss_pred eCeEEEEeeCccCch
Q 039864 435 CDSRVLVKPYKEKGK 449 (666)
Q Consensus 435 ~GR~V~Vk~Ak~K~k 449 (666)
+||.|.|.++.++.+
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987653
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=5.6e-13 Score=122.21 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcce-EEEEeCCHHHHHHHHHcCCCceeeC--eEEEEeeCccCc
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMF-GFVTFVYPETVKLILARGNPHFICD--SRVLVKPYKEKG 448 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGF-GFVTF~~~EsAk~AL~~lngh~I~G--R~V~Vk~Ak~K~ 448 (666)
.|||+ ++.|.+|+++|+++|++||.|.+|+|+. + +|| |||+|.+.++|.+|++.||+..|.| +.|+|..|+++.
T Consensus 27 ~l~V~-NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQ-NPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEE-SCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEc-CcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 46788 7899999999999999999999999976 3 597 9999999999999999999999988 699999998775
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.43 E-value=1.9e-13 Score=124.53 Aligned_cols=77 Identities=19% Similarity=0.426 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.+++|||+ ++++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++. .+.++|+.|.|+++
T Consensus 2 ~~~~l~v~-nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIG-GLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEEC-SCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 47899999 68899999999999999999999999987 7899999999999999999996 68999999999998
Q ss_pred ccCc
Q 039864 445 KEKG 448 (666)
Q Consensus 445 k~K~ 448 (666)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=3.3e-13 Score=130.70 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
..++|||+ ++++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.|+||.|.|++++
T Consensus 108 ~~~~l~V~-nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIK-GFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEE-CCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEec-CCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999 68889999999999999999999999987 78999999999999999999884 569999999999876
Q ss_pred c
Q 039864 446 E 446 (666)
Q Consensus 446 ~ 446 (666)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 178
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=3.8e-13 Score=134.00 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCC-Cceee---CeEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGN-PHFIC---DSRVL 440 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~ln-gh~I~---GR~V~ 440 (666)
...++|||+ ++++.+|+++|+++|++||.|.+|+|+.| +++|||||+|.+.++|.+|+..++ +.++. ||+|.
T Consensus 94 ~~~~~l~v~-nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVK-NLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCccccc-CCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 346799999 57889999999999999999999999988 789999999999999999999994 55555 99999
Q ss_pred EeeCccCc
Q 039864 441 VKPYKEKG 448 (666)
Q Consensus 441 Vk~Ak~K~ 448 (666)
|+++.++.
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987653
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.42 E-value=3.2e-13 Score=146.24 Aligned_cols=81 Identities=15% Similarity=0.370 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ +|++.+|+++|+++|++||+|+.|.|+.| +++|||||+|.+.++|.+||+.||++.|+|+.|.|.+
T Consensus 100 ~~~~~lfV~-nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVA-RVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999 68899999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
++++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.40 E-value=3.3e-13 Score=123.19 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec------CCcceEEEEeCCHHHHHHHHHcCCCceee---CeEE
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ------QKRMFGFVTFVYPETVKLILARGNPHFIC---DSRV 439 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D------kSRGFGFVTF~~~EsAk~AL~~lngh~I~---GR~V 439 (666)
.+++|||+ ++++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.+++..+. ++.+
T Consensus 2 ~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVG-QVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEE-SCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEe-CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 57899999 68899999999999999999999999987 47899999999999999999998997776 6788
Q ss_pred EEeeCccCc
Q 039864 440 LVKPYKEKG 448 (666)
Q Consensus 440 ~Vk~Ak~K~ 448 (666)
.|.++..+.
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888876544
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=5.5e-13 Score=121.71 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceee---CeEEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFIC---DSRVLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~---GR~V~V 441 (666)
...++|||+ ++++.+|+++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|++.||+..+. |++|.|
T Consensus 93 ~~~~~l~v~-nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIG-MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEc-CCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999 68889999999999999999999999988 67999999999999999999999998766 499999
Q ss_pred eeC
Q 039864 442 KPY 444 (666)
Q Consensus 442 k~A 444 (666)
++|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.38 E-value=1e-12 Score=130.76 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCC-CHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTF-KDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~-TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
....++|||+ ++++.+ ++++|+++|++||.|.+|+|+.| +++|||||+|.+.++|.+|+..||++.|+|+.|.|.
T Consensus 181 ~~~~~~l~v~-nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVD-RLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEE-CCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEe-cCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999 577884 99999999999999999999987 779999999999999999999999999999999999
Q ss_pred eCccCchhhHHH
Q 039864 443 PYKEKGKIVEKR 454 (666)
Q Consensus 443 ~Ak~K~k~~~r~ 454 (666)
++.++.......
T Consensus 260 ~a~~~~~~~~~~ 271 (284)
T 3smz_A 260 FCAPGPPGRSML 271 (284)
T ss_dssp ECCSSSCHHHHH
T ss_pred EecCCCcccchh
Confidence 999887655444
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=8.1e-13 Score=120.11 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeC--eEEEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICD--SRVLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~G--R~V~V 441 (666)
...++|||+ ++++.+++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|++.|++..|.| ++|.|
T Consensus 87 ~~~~~l~v~-nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVT-NLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEE-SCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEe-CCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 457899999 57889999999999999999999999987 568999999999999999999999999988 99999
Q ss_pred eeC
Q 039864 442 KPY 444 (666)
Q Consensus 442 k~A 444 (666)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=8.9e-13 Score=121.48 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec-CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ-QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D-kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
...++|||+ ++++.+++++|+++|++||.|..| ..+ ++||||||+|.+.++|.+|++.|+++.|+|+.|.|.++++
T Consensus 97 ~~~~~l~v~-nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAK-NLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEE-SCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEe-CCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 457899999 688899999999999999999877 222 8899999999999999999999999999999999999988
Q ss_pred Cc
Q 039864 447 KG 448 (666)
Q Consensus 447 K~ 448 (666)
|.
T Consensus 174 k~ 175 (175)
T 1fje_B 174 KG 175 (175)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=4e-13 Score=126.71 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCccC
Q 039864 369 ANRQIYLTFPADS-TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKEK 447 (666)
Q Consensus 369 ~srtIYV~~~ld~-~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~K 447 (666)
.+++|||+ ++++ ++++++|+++|++||.|.+|+|++|+ ||||||+|.+.++|++|++.|++..|.|+.|.|.+++.+
T Consensus 2 ~~~~l~v~-nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVS-NLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEE-CCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEe-CCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 36899999 5666 99999999999999999999999974 899999999999999999989999999999999998765
Q ss_pred c
Q 039864 448 G 448 (666)
Q Consensus 448 ~ 448 (666)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 3
No 186
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.9e-12 Score=114.25 Aligned_cols=82 Identities=10% Similarity=0.184 Sum_probs=68.9
Q ss_pred ccCCCCceEEEcCCCC------CCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeE
Q 039864 365 KLTSANRQIYLTFPAD------STFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSR 438 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld------~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~ 438 (666)
......++|-|.+... ..++|++|+++|++||+|.+|+|+. ++||||||+|.+.++|++|++.+++ +.|+.
T Consensus 5 ~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 5 SSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp CCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred cCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 3455677888876442 3589999999999999999999985 6899999999999999999998444 68999
Q ss_pred EEEeeCccCch
Q 039864 439 VLVKPYKEKGK 449 (666)
Q Consensus 439 V~Vk~Ak~K~k 449 (666)
|.|++++++..
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987653
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.35 E-value=2.2e-12 Score=128.33 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee-CeEEEEeeCc
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC-DSRVLVKPYK 445 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~-GR~V~Vk~Ak 445 (666)
....++|||+ ++++.+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|.+|++.||+..|. |+.|.|.+++
T Consensus 204 ~~~~~~l~v~-nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLT-NLPEETNELMLSMLFNQFPGFKEVRLVPG-RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEe-CCCCcCCHHHHHHHHHhcCCeEEEEEecC-CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4567899999 67889999999999999999999999986 4699999999999999999999999999 9999999986
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=1.2e-12 Score=118.22 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeE--EEE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSR--VLV 441 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~--V~V 441 (666)
...++|||+ ++++.+++++|+++|++||.|.+|+|+.| +++|||||+|.+.++|.+|++.||+..|.|+. |.|
T Consensus 86 ~~~~~l~v~-nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVS-GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEEC-CCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 456789999 57889999999999999999999999987 56899999999999999999999999999975 888
Q ss_pred eeC
Q 039864 442 KPY 444 (666)
Q Consensus 442 k~A 444 (666)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.31 E-value=3.5e-12 Score=127.41 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=73.8
Q ss_pred cCCCCceEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeec-----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEE
Q 039864 366 LTSANRQIYLTFPADST-FKDEDVSNYFSIFGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKLILARGNPHFICDSRV 439 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~-~TEedLre~FSkFG~V~dVrI~~D-----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V 439 (666)
.....++|||+ ++++. +++++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|+ .||++.|+|+.|
T Consensus 206 ~~~~~~~l~v~-nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 206 ATLEGREIMIR-NLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp -CCTTTEEEEE-EECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCceEEEE-CCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 34567899999 57888 999999999999999999999986 46899999999999999999 999999999999
Q ss_pred EEeeCccCc
Q 039864 440 LVKPYKEKG 448 (666)
Q Consensus 440 ~Vk~Ak~K~ 448 (666)
.|.++++|.
T Consensus 284 ~V~~a~~k~ 292 (292)
T 2ghp_A 284 SVSLADKKP 292 (292)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998873
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.31 E-value=3.5e-12 Score=119.19 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIF----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD 436 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkF----G-------~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G 436 (666)
+.+++|||+ ++++++||++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .++++.|.|
T Consensus 2 ~~~~~l~V~-nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVG-NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEE-SCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEc-CCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 457999999 688999999999999999 5 677777765 8999999999999999999 789999999
Q ss_pred eEEEEeeCccCc
Q 039864 437 SRVLVKPYKEKG 448 (666)
Q Consensus 437 R~V~Vk~Ak~K~ 448 (666)
+.|.|.++..+.
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987654
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=3.1e-12 Score=127.42 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=72.8
Q ss_pred cCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 366 LTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 366 ~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
.....++|||+ ++++++|+++|+++|++||.|.+|+|++ +||||||+|.+.++|++|+..++++.|.|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~-nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 18 TYTQRCRLFVG-NLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SSCGGGEEEEE-SCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEE-CCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 34667899999 6889999999999999999999999987 79999999999999999999999999999999999887
Q ss_pred cC
Q 039864 446 EK 447 (666)
Q Consensus 446 ~K 447 (666)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 192
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.31 E-value=3.7e-12 Score=116.46 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIF----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD 436 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkF----G-------~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G 436 (666)
+.+++|||+ ++++++||++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .++++.|.|
T Consensus 2 r~~~~l~V~-nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVG-NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEE-SCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEc-CCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 357899999 688999999999999999 7 888888876 7999999999999999999 789999999
Q ss_pred eEEEEeeCccC
Q 039864 437 SRVLVKPYKEK 447 (666)
Q Consensus 437 R~V~Vk~Ak~K 447 (666)
+.|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.30 E-value=1.2e-12 Score=120.63 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=71.6
Q ss_pred ccCCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 365 KLTSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 365 ~~~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
......++|||+ ++++++||++|+++|++||.|..+.|... ++||||||+|.+.++|++|++ |+++.|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~-nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIG-NLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEE-CCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEe-CCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 456778999999 68899999999999999999877333222 799999999999999999995 7999999999999
Q ss_pred eeCccCch
Q 039864 442 KPYKEKGK 449 (666)
Q Consensus 442 k~Ak~K~k 449 (666)
.++.++..
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99987643
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=112.57 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCCce-EEEcCCCCCCCCHHH----HHHHhhcC-CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 368 SANRQ-IYLTFPADSTFKDED----VSNYFSIF-GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 368 ~~srt-IYV~~~ld~~~TEed----Lre~FSkF-G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
+.+.| |||+ |+++++++++ |+++|++| |+|.+|. .|||||+|.+.++|++|++.|++..|.||.|+|
T Consensus 6 ~p~~T~lYV~-NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVY-NLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEE-SCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEe-CCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 44555 9999 7999999988 55899999 5999993 499999999999999999999999999999999
Q ss_pred eeCccCchhh
Q 039864 442 KPYKEKGKIV 451 (666)
Q Consensus 442 k~Ak~K~k~~ 451 (666)
..|+.+.+..
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9998876543
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.28 E-value=3.2e-12 Score=120.52 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee-CeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFG-PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC-DSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG-~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~-GR~V~Vk~A 444 (666)
.+.+++|||+ ++++.+++++|+++|++|| .|.+|+|+.+ .||||||+|.+.++|.+|++.|++..|+ |+.|.|.++
T Consensus 117 ~~~~~~l~v~-nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 117 FPPSATLHLS-NIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCEEEEC-CCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCCccEEEEe-CCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3558999999 6788999999999999999 9999999764 6899999999999999999999999999 999999998
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=8.3e-12 Score=124.23 Aligned_cols=81 Identities=9% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec----CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk 442 (666)
.+..++|||+ ++++.+++++|+++|++||.|.+|+|++| +++|||||+|.+.++|.+|++.+++..|+|+.|.|.
T Consensus 92 ~~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 92 QPTDALLCVA-NLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp CCCSCEEEEE-SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCEEEEc-CCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999 68899999999999999999999999987 679999999999999999999999999999999999
Q ss_pred eCccCc
Q 039864 443 PYKEKG 448 (666)
Q Consensus 443 ~Ak~K~ 448 (666)
++.++.
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 997754
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.27 E-value=7.4e-12 Score=122.23 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee-CeEEEEeeC
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSIFG-PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC-DSRVLVKPY 444 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSkFG-~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~-GR~V~Vk~A 444 (666)
.+..++|||+ ++++.+++++|+++|++|| +|.+|+|+.+ +||||||+|.+.++|.+|++.|++..|. |+.|.|.++
T Consensus 148 ~~~~~~l~V~-nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLS-NIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEE-CCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEe-CCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 4567999999 6788999999999999999 9999999653 6899999999999999999999999999 999999999
Q ss_pred ccC
Q 039864 445 KEK 447 (666)
Q Consensus 445 k~K 447 (666)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=5.7e-12 Score=111.05 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=52.7
Q ss_pred HHHHHHh-hcCCCeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 386 EDVSNYF-SIFGPVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 386 edLre~F-SkFG~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
++|++.| ++||+|++|+|++| ++||||||+|.+.++|++|++.||+..++||.|.|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3344444 99999999999988 67999999999999999999999999999999999875
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=8.7e-12 Score=110.24 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCC-CC--------CHHHHHHHhhcCCCeeEEEeeec------CCcceEEEEeCCHHHHHHHHHcCCCc
Q 039864 368 SANRQIYLTFPADS-TF--------KDEDVSNYFSIFGPVQDVRIPYQ------QKRMFGFVTFVYPETVKLILARGNPH 432 (666)
Q Consensus 368 ~~srtIYV~~~ld~-~~--------TEedLre~FSkFG~V~dVrI~~D------kSRGFGFVTF~~~EsAk~AL~~lngh 432 (666)
..++.|.|.+..+. .+ .++||++.|++||+|++|+|++| +++|||||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35677777754321 22 34799999999999999999987 36899999999999999999999999
Q ss_pred eeeCeEEEEeeCccC
Q 039864 433 FICDSRVLVKPYKEK 447 (666)
Q Consensus 433 ~I~GR~V~Vk~Ak~K 447 (666)
.++||.|.|..+.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987643
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=9.1e-12 Score=124.42 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeec---CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFG-PVQDVRIPYQ---QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG-~V~dVrI~~D---kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
...++|||+ ++++.+++++|+++|++|| +|.+|+|+.+ ++||||||+|.+.++|.+|++.|+++.|.|+.|.|++
T Consensus 115 ~~~~~l~v~-nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMT-NFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEE-CCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEE-CCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457899999 6888999999999999999 9999999987 6899999999999999999999999999999999999
Q ss_pred CccCch
Q 039864 444 YKEKGK 449 (666)
Q Consensus 444 Ak~K~k 449 (666)
+.++.+
T Consensus 194 a~~~~~ 199 (292)
T 2ghp_A 194 SNPLEK 199 (292)
T ss_dssp CCCC--
T ss_pred CCCCcc
Confidence 987653
No 201
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=1.5e-11 Score=110.93 Aligned_cols=80 Identities=10% Similarity=-0.023 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCC---------CCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeE
Q 039864 368 SANRQIYLTFPADS---------TFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSR 438 (666)
Q Consensus 368 ~~srtIYV~~~ld~---------~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~ 438 (666)
..++.|.+.+..+. .-.++||++.|++||+|++|.|+++..||||||+|.+.++|++|++.||+..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34666777643322 123468999999999999999988777999999999999999999999999999999
Q ss_pred EEEeeCccC
Q 039864 439 VLVKPYKEK 447 (666)
Q Consensus 439 V~Vk~Ak~K 447 (666)
|.|..+.+.
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998643
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.22 E-value=8e-12 Score=121.75 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCe--eEEEeeec--CCcceEEEEeCCHHHHHHHHHcCCCceeeCe----EE
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPV--QDVRIPYQ--QKRMFGFVTFVYPETVKLILARGNPHFICDS----RV 439 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V--~dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR----~V 439 (666)
+.+++|||+ |+++++||++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+||..||+..|.|+ ++
T Consensus 121 ~p~~~l~v~-NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFF-NAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEE-EECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEe-CCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 457899999 688999999999999999999 99999887 5679999999999999999999999999988 57
Q ss_pred EEeeC
Q 039864 440 LVKPY 444 (666)
Q Consensus 440 ~Vk~A 444 (666)
.||++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77654
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=1.6e-11 Score=111.24 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCC----CCCHHHHHHHhhcCCCeeEEEeeec-C-------CcceEEEEeCCHHHHHHHHHcCCCceee
Q 039864 368 SANRQIYLTFPADS----TFKDEDVSNYFSIFGPVQDVRIPYQ-Q-------KRMFGFVTFVYPETVKLILARGNPHFIC 435 (666)
Q Consensus 368 ~~srtIYV~~~ld~----~~TEedLre~FSkFG~V~dVrI~~D-k-------SRGFGFVTF~~~EsAk~AL~~lngh~I~ 435 (666)
+.++.|+|.+..+. +-.++||++.|++||+|.+|+|+.| . +|||+||+|.+.++|.+|++.||+..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 35788888854321 2247899999999999999999987 2 4699999999999999999999999999
Q ss_pred CeEEEEeeCcc
Q 039864 436 DSRVLVKPYKE 446 (666)
Q Consensus 436 GR~V~Vk~Ak~ 446 (666)
||.|.|..+.+
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998764
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=6.1e-11 Score=125.60 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=67.6
Q ss_pred ccCCCCceEEEcCC-CCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceee---Ce--E
Q 039864 365 KLTSANRQIYLTFP-ADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFIC---DS--R 438 (666)
Q Consensus 365 ~~~~~srtIYV~~~-ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~---GR--~ 438 (666)
.....+++|||++. +++.+||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34677889999943 688999999999999999999999876 7999999999999999999999999883 45 5
Q ss_pred EEEeeC
Q 039864 439 VLVKPY 444 (666)
Q Consensus 439 V~Vk~A 444 (666)
+.|..+
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 666655
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=88.80 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCC---CC-CCH---HHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEE
Q 039864 368 SANRQIYLTFPAD---ST-FKD---EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVL 440 (666)
Q Consensus 368 ~~srtIYV~~~ld---~~-~TE---edLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~ 440 (666)
+.--||+|....+ .+ +.+ .+|.+.|++||+|..|||+.| .+||+|.+.++|.+|++ ||+..|+||.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 3445788863111 22 332 679999999999999999875 39999999999999998 899999999999
Q ss_pred EeeCccC
Q 039864 441 VKPYKEK 447 (666)
Q Consensus 441 Vk~Ak~K 447 (666)
|+.+++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9988753
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=1.9e-08 Score=97.61 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhcCCCeeEEEeeec--------CCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCcc
Q 039864 383 FKDEDVSNYFSIFGPVQDVRIPYQ--------QKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYKE 446 (666)
Q Consensus 383 ~TEedLre~FSkFG~V~dVrI~~D--------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak~ 446 (666)
-.+++|++.|++||+|.+|.|+.+ ++|||+||+|.+.++|.+|++.||+..++||.|.|..+.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999999854 6789999999999999999999999999999999998753
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.4e-07 Score=82.02 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCCceEEEcCCCCC------CCCH---HHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCe
Q 039864 367 TSANRQIYLTFPADS------TFKD---EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDS 437 (666)
Q Consensus 367 ~~~srtIYV~~~ld~------~~TE---edLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR 437 (666)
-+.--||+|.. +++ .+.+ .+|.+.|++||+|..|||+.|+ +||||.+.++|.+||+ |++..|+||
T Consensus 12 GPpD~Tv~V~~-~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNL-QSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEE-SSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEe-cCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 34556899973 222 2332 4699999999999999999874 9999999999999999 899999999
Q ss_pred EEEEeeC
Q 039864 438 RVLVKPY 444 (666)
Q Consensus 438 ~V~Vk~A 444 (666)
.|+|+.-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999753
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=6.7e-07 Score=82.09 Aligned_cols=76 Identities=12% Similarity=0.032 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCC-HHHHHHHHHcCC--CceeeCeEEEEe
Q 039864 367 TSANRQIYLTFPADST-FKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVY-PETVKLILARGN--PHFICDSRVLVK 442 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~-~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~-~EsAk~AL~~ln--gh~I~GR~V~Vk 442 (666)
-+...-|||+ +++++ +++++|+++|++||+|..|.++.| +-.|||.|.+ +++|+.|+..++ +..|+|..+.+.
T Consensus 15 ~~~G~il~v~-~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFS-GDLDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEE-ESCCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEe-cCCCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 4556778898 56777 999999999999999999999986 3379999999 899999999985 788999888887
Q ss_pred eCc
Q 039864 443 PYK 445 (666)
Q Consensus 443 ~Ak 445 (666)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.0013 Score=59.07 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=65.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhc-C----CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEE
Q 039864 367 TSANRQIYLTFPADSTFKDEDVSNYFSI-F----GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLV 441 (666)
Q Consensus 367 ~~~srtIYV~~~ld~~~TEedLre~FSk-F----G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~V 441 (666)
....++|.|.+ ++..+.++.|+-||+. - |+|++|.... +=|+|+|.+++.|+++|++ ..|.|.|..|.|
T Consensus 5 ~~~~~~I~V~~-lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRG-LPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEES-CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccCccEEEEEC-CCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 45678999995 5568899999999987 2 6999998742 6699999999999999988 899999999999
Q ss_pred eeCccCc
Q 039864 442 KPYKEKG 448 (666)
Q Consensus 442 k~Ak~K~ 448 (666)
.++-++.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 9987764
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0029 Score=57.80 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=61.6
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcC-----CCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeC
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIF-----GPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPY 444 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkF-----G~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~A 444 (666)
.|+|=+= +++.++++..|+.+.+.| |.|..|.+..| . |=|+|.|.+...|-+|.-.+++..|+||+|+|...
T Consensus 21 ~rtiaL~-~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLF-PLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-F-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEE-CCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-T-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEe-cCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-C-CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 3445443 678899999999999999 99999999886 3 44999999999999988778999999999999643
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.0064 Score=55.85 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=53.6
Q ss_pred CHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeC-eEEEEeeCccCc
Q 039864 384 KDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICD-SRVLVKPYKEKG 448 (666)
Q Consensus 384 TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~G-R~V~Vk~Ak~K~ 448 (666)
.-..|-++|++||+|++...+. ...+-.|+|.+..+|++||.+ |+.+|+| -.|-|+++..+.
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCHH
T ss_pred HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHH
Confidence 4578899999999999998743 567999999999999999999 9999985 789999986544
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.15 E-value=0.005 Score=57.51 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=53.4
Q ss_pred EcCCCCCCCCHHHHHHHhhcCCCeeE-EEeeec-----------------CCcceEEEEeCCHHHHHHHHHcCCCceeeC
Q 039864 375 LTFPADSTFKDEDVSNYFSIFGPVQD-VRIPYQ-----------------QKRMFGFVTFVYPETVKLILARGNPHFICD 436 (666)
Q Consensus 375 V~~~ld~~~TEedLre~FSkFG~V~d-VrI~~D-----------------kSRGFGFVTF~~~EsAk~AL~~lngh~I~G 436 (666)
.|++. -....|-++|++||.|.+ +.+..+ ....+--|+|+++.+|.+||.+ |+.+|+|
T Consensus 13 FGFp~---~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G 88 (132)
T 3p3d_A 13 FGYPE---TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNG 88 (132)
T ss_dssp ECCCG---GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETT
T ss_pred EecCH---HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCc
Confidence 36643 356789999999999977 322210 0245679999999999999999 9999999
Q ss_pred eEEEEeeCcc
Q 039864 437 SRVLVKPYKE 446 (666)
Q Consensus 437 R~V~Vk~Ak~ 446 (666)
..|-|+++.+
T Consensus 89 ~mIGV~Py~~ 98 (132)
T 3p3d_A 89 VLLGVIPYTK 98 (132)
T ss_dssp EECEEEECCH
T ss_pred EEEEEEECCH
Confidence 9999999963
No 213
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.81 E-value=0.0021 Score=53.73 Aligned_cols=24 Identities=38% Similarity=0.941 Sum_probs=22.3
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
...+|.||.+|.|++|.+|+|.|.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred cCeeCHHHhcCCCCCCCCCCCccc
Confidence 467999999999999999999997
No 214
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.61 E-value=0.0047 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.941 Sum_probs=20.4
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
-..+|.||.+|.|++|..|+|.|.
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred cceeCHhHccCcCCCCCCCCCccc
Confidence 345899999999999999999997
No 215
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.56 E-value=0.0071 Score=49.59 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=39.5
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHHhh
Q 039864 8 SILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQL 61 (666)
Q Consensus 8 ~ivf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~~L 61 (666)
..+|.+|++++|++|.||.|+|| +....|++.|=-.||. |++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLL--E~d~~ell~ll~~~e~-L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLL--ELSPAQLLLLLASEDS-LRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHT--TSCHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhc--cCCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 45899999999999999999998 4666678888776665 566666665433
No 216
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.44 E-value=0.008 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.944 Sum_probs=15.2
Q ss_pred Cccceec-cccccCCCCCcccCCC
Q 039864 237 YRPCLYF-ARGFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpClYF-arG~Ck~GssCrf~Hg 259 (666)
..+|.|| .+|+|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 4566666 4667777777777665
No 217
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.40 E-value=0.008 Score=50.45 Aligned_cols=23 Identities=43% Similarity=1.057 Sum_probs=22.0
Q ss_pred CccceeccccccCCCCCcccCCC
Q 039864 237 YRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpClYFarG~Ck~GssCrf~Hg 259 (666)
.+.|.+|.+|.|+.|+.|.|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 38999999999999999999999
No 218
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.07 E-value=0.005 Score=50.98 Aligned_cols=22 Identities=41% Similarity=1.025 Sum_probs=20.3
Q ss_pred ccceeccccccCCCCC-cccCCC
Q 039864 238 RPCLYFARGFCKNGES-CKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~Gss-Crf~Hg 259 (666)
..|++|.+|.|++|.+ |+|.|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 3799999999999995 999997
No 219
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.93 E-value=0.012 Score=51.14 Aligned_cols=52 Identities=31% Similarity=0.518 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHHhhc
Q 039864 8 SILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLG 62 (666)
Q Consensus 8 ~ivf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~~Lg 62 (666)
.-+|.+|++++||.|.||.|+||= ....|++.|=-.| .+|++.|..|-.-|.
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Lle~~-e~L~~kV~EA~~vL~ 80 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLLDTP-GLLDAKVQEALEVLN 80 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTCCTH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHH
Confidence 358999999999999999999984 5666788875555 456777777766553
No 220
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.92 E-value=0.014 Score=48.26 Aligned_cols=26 Identities=31% Similarity=0.825 Sum_probs=22.7
Q ss_pred CCCCccceecc-ccccCCCCCcccCCC
Q 039864 234 NLGYRPCLYFA-RGFCKNGESCKFVHG 259 (666)
Q Consensus 234 ~~g~KpClYFa-rG~Ck~GssCrf~Hg 259 (666)
...-++|.||. .|.|+.|..|+|.|+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCC
Confidence 34567999995 899999999999998
No 221
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.87 E-value=0.0072 Score=53.37 Aligned_cols=24 Identities=33% Similarity=1.027 Sum_probs=21.7
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
.-..|.||.+|.|++|..|+|.|.
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCccCcccccCcCCCCCCCCCCCC
Confidence 445899999999999999999995
No 222
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=94.58 E-value=0.012 Score=51.09 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=40.7
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHHhhc
Q 039864 8 SILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLG 62 (666)
Q Consensus 8 ~ivf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~~Lg 62 (666)
.-+|.+|++++||+|.||.|+||= ....|++.|=-.||. |++-|..|-.-|.
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLE--md~~Ell~Lles~e~-L~~kv~EA~~vL~ 79 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLE--MDQTEVLHLLESPDA-LKAKVAEAMEVLR 79 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHH--HCHHHHHHHTTCSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhhhhhc--CCHHHHHHHHcCHHH-HHHHHHHHHHHHH
Confidence 458999999999999999999985 556778888776665 5666666665553
No 223
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.49 E-value=0.07 Score=47.97 Aligned_cols=75 Identities=8% Similarity=0.036 Sum_probs=60.5
Q ss_pred CCceEEEcCCCCCCC-CH----HHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEee
Q 039864 369 ANRQIYLTFPADSTF-KD----EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKP 443 (666)
Q Consensus 369 ~srtIYV~~~ld~~~-TE----edLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~ 443 (666)
-..+|+|++. +.++ .. +.++++|.+|+++......+.-.| --|.|.++++|.+|-..|++..+.|++++|..
T Consensus 4 ~pntLiitnl-~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRR--irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVA-NDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKR--VRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECC-CGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTE--EEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecC-CHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceE--EEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3568999954 4422 32 567999999999999887764223 68999999999999999999999999999988
Q ss_pred Ccc
Q 039864 444 YKE 446 (666)
Q Consensus 444 Ak~ 446 (666)
+++
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 224
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.42 E-value=0.02 Score=52.16 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=27.8
Q ss_pred EEEeeec--CCcceEEEEeCCHHHHHHHHHcCCC
Q 039864 400 DVRIPYQ--QKRMFGFVTFVYPETVKLILARGNP 431 (666)
Q Consensus 400 dVrI~~D--kSRGFGFVTF~~~EsAk~AL~~lng 431 (666)
.+.|+.+ +++|||||+|.++++|++|++.+++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4677777 8899999999999999999987664
No 225
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.40 E-value=0.0071 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.811 Sum_probs=0.0
Q ss_pred Cccce-eccccccCCCCCcccCCC
Q 039864 237 YRPCL-YFARGFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpCl-YFarG~Ck~GssCrf~Hg 259 (666)
.++|. |+..|+|++|..|+|.|+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp ------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCC
Confidence 46997 556999999999999997
No 226
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.10 E-value=0.024 Score=50.01 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=40.8
Q ss_pred HHHHHhhhh--cCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHHhhc
Q 039864 8 SILFNRIKS--IDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLG 62 (666)
Q Consensus 8 ~ivf~riq~--ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~~Lg 62 (666)
.-+|.+|++ ++||+|.||.|+|| +....|++.|=-.|| +|++.|..|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLL--Emd~~ElL~LLes~e-~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMIL--DLPPQEVFPLLESDE-LFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHT--TSCHHHHHHHHTCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHh--cCCHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 358999999 99999999999998 577778888866655 55666776665553
No 227
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.02 E-value=0.016 Score=49.88 Aligned_cols=22 Identities=41% Similarity=0.916 Sum_probs=20.3
Q ss_pred ccceeccccccCCCC-CcccCCC
Q 039864 238 RPCLYFARGFCKNGE-SCKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~Gs-sCrf~Hg 259 (666)
-.|++|.+|.|++|. .|+|.|-
T Consensus 10 ~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 10 EVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EBCTTGGGTCCCSCTTTCSSBCC
T ss_pred hhcHHHhcCCCCCCCCCCCCcCC
Confidence 379999999999995 9999997
No 228
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.02 E-value=0.013 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.771 Sum_probs=20.9
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
....|.+|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 3558999999999999 9999997
No 229
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=93.39 E-value=0.053 Score=47.45 Aligned_cols=51 Identities=29% Similarity=0.471 Sum_probs=39.4
Q ss_pred HHHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHHhhc
Q 039864 9 ILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLG 62 (666)
Q Consensus 9 ivf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~~Lg 62 (666)
.+|.+|++++|+.|.||.|+||= .+..|++.|==.|| .|++-|..|-.-|.
T Consensus 27 ~Lyp~V~~~~p~~A~KITGMLLE--md~~Ell~lle~~e-~L~~kV~EA~~vL~ 77 (88)
T 3kuj_A 27 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESPE-SLRSKVDEAVAVLQ 77 (88)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHTT--SCHHHHHHHHHCHH-HHHHHHHHHHHHHH
T ss_pred HhHHHHHhhCCCccchhhhHhhc--CCHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 58999999999999999999995 55667888766655 56766777665543
No 230
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.08 E-value=0.019 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.749 Sum_probs=21.2
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
....|.||.+|.|.+| +|+|+|.
T Consensus 55 ~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 55 TVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp EEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ccccchhhccCCCCCC-CcCccCC
Confidence 4568999999999999 9999997
No 231
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.83 E-value=0.023 Score=49.64 Aligned_cols=21 Identities=43% Similarity=1.001 Sum_probs=20.3
Q ss_pred cceeccccccCCCC-CcccCCC
Q 039864 239 PCLYFARGFCKNGE-SCKFVHG 259 (666)
Q Consensus 239 pClYFarG~Ck~Gs-sCrf~Hg 259 (666)
.|++|.||.|++|. .|+|.|-
T Consensus 19 VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 19 VCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp BCHHHHHTCCCCCTTTSSSBCC
T ss_pred hchHHhcCCCCCCCCCCCCcCC
Confidence 89999999999998 9999997
No 232
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.75 E-value=0.012 Score=52.01 Aligned_cols=22 Identities=45% Similarity=1.029 Sum_probs=20.6
Q ss_pred ccceeccccccCCCC-CcccCCC
Q 039864 238 RPCLYFARGFCKNGE-SCKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~Gs-sCrf~Hg 259 (666)
..|+||.+|.|++|. .|+|.|.
T Consensus 21 ~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 21 EVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhHHHhcCcCCCCCCCCCCcCC
Confidence 489999999999999 7999997
No 233
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.73 E-value=0.056 Score=59.58 Aligned_cols=56 Identities=16% Similarity=0.349 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHc
Q 039864 370 NRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAR 428 (666)
Q Consensus 370 srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ 428 (666)
.|.|||.. ...+++.+|.+||++||+|.++..-.+ ..-|+.|+|.+.++++.++..
T Consensus 53 ~rsv~v~~--~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHC--PEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEE--CCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEc--CCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 46899974 456899999999999999999987553 345999999999999988765
No 234
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=92.70 E-value=0.052 Score=51.34 Aligned_cols=51 Identities=29% Similarity=0.502 Sum_probs=41.1
Q ss_pred HHHhhhhcCCCchhhhhhhhhhccCChhhHHHhhcCChHHHHHHHHHHHHhhcc
Q 039864 10 LFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLGL 63 (666)
Q Consensus 10 vf~riq~ldPenasKI~G~lLlQd~~e~emirLA~gpd~ll~~vi~kak~~Lg~ 63 (666)
+|-+|++++||+|.||.|+||= .+..|++.|=-.||. |++.|..|-.-|.-
T Consensus 74 LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~e~-L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 74 LFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESPES-LRSKVDEAVAVLQA 124 (144)
T ss_dssp SHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCTTH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCHHH-HHHHHHHHHHHHHH
Confidence 6899999999999999999995 556688888776664 57777777776653
No 235
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.63 E-value=0.039 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.926 Sum_probs=20.2
Q ss_pred Cccceeccc-cccCCCCCcccCCC
Q 039864 237 YRPCLYFAR-GFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpClYFar-G~Ck~GssCrf~Hg 259 (666)
..+|+||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 457999999 9999 899999997
No 236
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=91.32 E-value=0.048 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.675 Sum_probs=21.0
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
.+-.|.+|.||.|.++ .|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 3568999999999999 9999997
No 237
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.24 E-value=0.22 Score=44.61 Aligned_cols=53 Identities=28% Similarity=0.452 Sum_probs=42.3
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCC
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGN 430 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~ln 430 (666)
=+||+|+.+| .-.||.+.|+.|| =..|+.+-| --|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ew--Kt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEW--KTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTC--CHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhh--hhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 3566787765 6699999999999 345666655 579999999999999998743
No 238
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=91.09 E-value=0.043 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.988 Sum_probs=20.5
Q ss_pred Cccceeccc-cccCCCCCcccCCC
Q 039864 237 YRPCLYFAR-GFCKNGESCKFVHG 259 (666)
Q Consensus 237 ~KpClYFar-G~Ck~GssCrf~Hg 259 (666)
..+|.||.+ |.|.+ ..|+|.|.
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred CCcccccCCCCCCCC-CCeeccCC
Confidence 458999999 99999 99999997
No 239
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.80 E-value=0.41 Score=42.77 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=41.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcC
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARG 429 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~l 429 (666)
.=+||+|+.+| .-.||.+.|+.||- ..|+.+-| --|||.|.+++.|..|+..+
T Consensus 17 HVf~l~FP~ew--Kt~DI~~lFs~fgg-v~I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPKEW--KTSDLYQLFSAFGN-IQISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCTTC--CHHHHHHHHTTTCS-CCCEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCChhh--hhHHHHHHhhccCC-EEEEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 34566777665 67999999999994 34666655 57999999999999999864
No 240
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.71 E-value=0.09 Score=47.63 Aligned_cols=41 Identities=7% Similarity=-0.155 Sum_probs=37.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHcC-CCceeeCeEEEEeeCccCc
Q 039864 407 QKRMFGFVTFVYPETVKLILARG-NPHFICDSRVLVKPYKEKG 448 (666)
Q Consensus 407 kSRGFGFVTF~~~EsAk~AL~~l-ngh~I~GR~V~Vk~Ak~K~ 448 (666)
+-+|+++|+|.+.+.|++|++.+ |+..|+| .+.|.++..+.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~ 52 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF 52 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc
Confidence 67899999999999999999999 9999999 99999887544
No 241
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=87.23 E-value=0.13 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.675 Sum_probs=20.9
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
-+-.|.+|.||.|.++ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 3568999999999999 8999997
No 242
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=81.17 E-value=4.3 Score=35.32 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=51.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeec------CCcceEEEEeCCHHHHHHHHHcCCCceeeCe
Q 039864 371 RQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQ------QKRMFGFVTFVYPETVKLILARGNPHFICDS 437 (666)
Q Consensus 371 rtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~D------kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR 437 (666)
.+|.|. .++..+||+++.+..+.+.++....-+.- ..-.-|+|.|.+.|++..-.+..+++.+.+.
T Consensus 2 ~KvVIR-rLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIR-RLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEE-EECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEe-CCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 467777 57789999999999999988776655432 1223599999999999999999898877543
No 243
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.00 E-value=16 Score=40.43 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=44.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCC
Q 039864 368 SANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNP 431 (666)
Q Consensus 368 ~~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lng 431 (666)
....-++|+++..| ...+|.+.|+.||. .+|+.+- ...+||.|.+.+.|..++..++.
T Consensus 438 ~R~~vl~v~f~~~~--~~~~i~~~fs~fg~-v~V~wid---dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 438 KRDHVLHVTFPKEW--KTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CGGGEEEEECCTTC--CHHHHHHHGGGGCC-CEEEECS---SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcCcEEEEeCCCCC--CHHHHHHHHHhcCC-EEEEEEc---CCeEEEEECCHHHHHHHHHHHHh
Confidence 33456777876655 57999999999995 4666654 45699999999999999988643
No 244
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=60.12 E-value=1.7 Score=34.39 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=20.2
Q ss_pred CCccceec-cccccCCCCCcccCCC
Q 039864 236 GYRPCLYF-ARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYF-arG~Ck~GssCrf~Hg 259 (666)
....|.-| +-|+|.+|-.|.+.|.
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred ccchhhhccccccCCCCCCCCcccc
Confidence 55688654 6899999999999996
No 245
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=58.57 E-value=22 Score=31.47 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=46.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeee-c-----CCcceEEEEeCCHHHHHHHHHcCCCceeeCe
Q 039864 369 ANRQIYLTFPADSTFKDEDVSNYFSIFGPVQDVRIPY-Q-----QKRMFGFVTFVYPETVKLILARGNPHFICDS 437 (666)
Q Consensus 369 ~srtIYV~~~ld~~~TEedLre~FSkFG~V~dVrI~~-D-----kSRGFGFVTF~~~EsAk~AL~~lngh~I~GR 437 (666)
-+-+|.|. .|+..+||+++.+.++.+=++....-+. + ..-.-|+|.|.+.|++..-.+..+++.+.+.
T Consensus 8 ~~~KvVIR-rLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIR-RLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEE-CCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEe-CCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 35578888 4777899999887777654432221111 1 1112389999999999999999898877543
No 246
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=45.55 E-value=5 Score=37.57 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCCCeeEEEeeecCCcceEEEEeC
Q 039864 385 DEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFV 417 (666)
Q Consensus 385 EedLre~FSkFG~V~dVrI~~DkSRGFGFVTF~ 417 (666)
++|+.++|...|.|..... .||||||+-.
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~----~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV----RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEET----TTTEEEEEEE
T ss_pred CCcccccccceeEEEEEEC----CCCeeEEeeC
Confidence 3567788888899887765 7899999976
No 247
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.36 E-value=38 Score=27.28 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=45.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCC-----CeeEEEeeecCCcceEEEEeCCHHHHHHHHHcCCCceeeCeEEEEeeCc
Q 039864 372 QIYLTFPADSTFKDEDVSNYFSIFG-----PVQDVRIPYQQKRMFGFVTFVYPETVKLILARGNPHFICDSRVLVKPYK 445 (666)
Q Consensus 372 tIYV~~~ld~~~TEedLre~FSkFG-----~V~dVrI~~DkSRGFGFVTF~~~EsAk~AL~~lngh~I~GR~V~Vk~Ak 445 (666)
++|+...-...++..+|-.++..-+ .|-.|+|. -.|.||.-... .++.+++.+++..++|+.+.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4666533444667788888887555 45667773 46999998765 5777888888999999999998764
No 248
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=31.30 E-value=10 Score=33.83 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=0.0
Q ss_pred cCCccccHHHHHHHhHHHHH
Q 039864 482 LGSKMFTQELMLRRKLEEQA 501 (666)
Q Consensus 482 lgsR~~t~Eel~RrklEeQe 501 (666)
+-++.+..|.+.|+|+|++-
T Consensus 67 ~laqels~eklarkqleeln 86 (110)
T 2hg7_A 67 LLAQELSQEKLARKQLEELN 86 (110)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666778888888887763
No 249
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=26.78 E-value=13 Score=25.18 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=12.2
Q ss_pred chhhhhhhhhhccC
Q 039864 21 NASKIMGYILIQDV 34 (666)
Q Consensus 21 nasKI~G~lLlQd~ 34 (666)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 57899999999986
No 250
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=24.62 E-value=15 Score=24.87 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.5
Q ss_pred chhhhhhhhhhccC
Q 039864 21 NASKIMGYILIQDV 34 (666)
Q Consensus 21 nasKI~G~lLlQd~ 34 (666)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 68899999999986
No 251
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=22.38 E-value=32 Score=30.09 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHH
Q 039864 496 KLEEQAELQQAIE 508 (666)
Q Consensus 496 klEeQee~~qAlE 508 (666)
|.+||+.+++||+
T Consensus 59 K~AEQ~AA~~AL~ 71 (94)
T 1t4n_A 59 KIAGIRAAENALR 71 (94)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456776777776
No 252
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=20.95 E-value=25 Score=35.50 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.3
Q ss_pred CCccceecccccc----CCCCCcccCCC
Q 039864 236 GYRPCLYFARGFC----KNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~C----k~GssCrf~Hg 259 (666)
.+.-|+||--|-| ..++.|+|.|-
T Consensus 88 ~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 88 SLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp SBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred ceeechhhhcCcCCcccCCCCCcccccc
Confidence 5889999999999 45799999996
No 253
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.63 E-value=66 Score=29.43 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=4.1
Q ss_pred CCCccCCccccccc
Q 039864 519 LPNLKNHSVHHHQR 532 (666)
Q Consensus 519 l~d~~~~~~~~~~~ 532 (666)
.+|.+|.++|||+.
T Consensus 129 ~~~~~~~~~~~~~~ 142 (142)
T 3gp4_A 129 NVERSNEGHHHHHH 142 (142)
T ss_dssp HHTTC---------
T ss_pred CccccCCCccccCC
Confidence 57999998888763
No 254
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=20.26 E-value=23 Score=27.51 Aligned_cols=21 Identities=33% Similarity=0.891 Sum_probs=17.7
Q ss_pred ccceeccccccCCCCCcccCCC
Q 039864 238 RPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 238 KpClYFarG~Ck~GssCrf~Hg 259 (666)
.||.=-.++||.|| .|+|+++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 48876677999999 8999886
No 255
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=20.21 E-value=33 Score=34.64 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.7
Q ss_pred CCccceeccccccCCCCCcccCCC
Q 039864 236 GYRPCLYFARGFCKNGESCKFVHG 259 (666)
Q Consensus 236 g~KpClYFarG~Ck~GssCrf~Hg 259 (666)
-+..|.||-+|-|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 367999999999999 89999996
Done!