BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039865
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L ++ A D +PLHLAA G+L++V L+ ++ A+D +G+
Sbjct: 13 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRT 70
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFY 123
PLH+AA H+ V+K +L+E G + +A D NG T LHLA +EV
Sbjct: 71 PLHLAARNGHLEVVK-----------LLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118
Query: 124 M 124
+
Sbjct: 119 L 119
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAA 88
+PLHLAA G+L++V L+ ++ A+D +G+ PLH+AA H+ V+K
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVK---------- 52
Query: 89 LILMERGVTILHACDDNGNTILHLAVLEKQVEVFYM 124
+L+E G + +A D NG T LHLA +EV +
Sbjct: 53 -LLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKL 86
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L ++ A D +PLHLAA G+L++V L+ ++ A+D +G+
Sbjct: 46 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRT 103
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ V+K L++
Sbjct: 104 PLHLAARNGHLEVVKLLLE 122
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 60 DGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQV 119
+G+ PLH+AA H+ V+K +L+E G + +A D NG T LHLA +
Sbjct: 1 NGRTPLHLAARNGHLEVVK-----------LLLEAGADV-NAKDKNGRTPLHLAARNGHL 48
Query: 120 EVFYM 124
EV +
Sbjct: 49 EVVKL 53
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G+ D V+++L ++ A DS +PLHLAA G+ ++V L+S + A+D DGK
Sbjct: 15 GNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKT 72
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV-- 121
PLH+AA H KE+VK +L+ +G +A D +G T LHLA EV
Sbjct: 73 PLHLAAENGH----KEVVK-------LLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVK 120
Query: 122 --FYMDFDGNNMDSN 134
D N DS+
Sbjct: 121 LLLSQGADPNTSDSD 135
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V+ +L + + A DS +PLHLAA G+ ++V L+S + + D DG+
Sbjct: 81 GHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS-DSDGRT 138
Query: 64 PLHIAAIRRHVNVLKELVK 82
PL +A R H N +E+VK
Sbjct: 139 PLDLA--REHGN--EEVVK 153
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G+ D V++++ ++ A DS +PLH AA +G+ +IV L+S ++ A+D DG+
Sbjct: 15 GNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRT 72
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFY 123
PLH AA H KE+VK +L+ +G + +A D +G T LH A E E+
Sbjct: 73 PLHYAAKEGH----KEIVK-------LLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 124 M 124
+
Sbjct: 121 L 121
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V+ ++ + ++ A DS +PLH AA +G+ +IV L+S ++ A+D DG+
Sbjct: 48 GHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRT 105
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLA 113
PLH AA H KE+VK +L+ +G + + D +G T L LA
Sbjct: 106 PLHYAAKEGH----KEIVK-------LLISKGADV-NTSDSDGRTPLDLA 143
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V+ ++ + ++ A DS +PLH AA +G+ +IV L+S ++ + D DG+
Sbjct: 81 GHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRT 138
Query: 64 PLHIAAIRRHVNVLKELVK 82
PL +A R H N +E+VK
Sbjct: 139 PLDLA--REHGN--EEIVK 153
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 3 LGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK 62
+GHL+ V+ +LR ++ A+D+ +PLHLAA+ G+L+IV L+ + ++ A+D G
Sbjct: 45 VGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN-AKDATGI 102
Query: 63 NPLHIAAIRRHVNVLKELVK 82
PL++AA H+ +++ L+K
Sbjct: 103 TPLYLAAYWGHLEIVEVLLK 122
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 20 AGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKE 79
A A D +PLH+AAA G+L+IV L+ N A D +G PLH+AA H+ +++
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASLGHLEIVE- 85
Query: 80 LVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G T L+LA +E+
Sbjct: 86 ----------VLLKYGADV-NAKDATGITPLYLAAYWGHLEI 116
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G+ PLH+AA H+ +++ +L+
Sbjct: 7 LEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVE-----------VLL 55
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
G + +A D NG T LHLA +E+
Sbjct: 56 RNGADV-NAVDTNGTTPLHLAASLGHLEI 83
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 3 LGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK 62
LGHL+ V+ +L+ ++ A D+ +PL+LAA G+L+IV L+ ++ A+D GK
Sbjct: 78 LGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGK 135
Query: 63 NPLHIA 68
I+
Sbjct: 136 TAFDIS 141
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 3 LGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK 62
+GHL+ V+ +L+ ++ ALD ++PLHLAA +G+L+IV L+ + ++ A D G
Sbjct: 57 VGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGS 114
Query: 63 NPLHIAAIRRHVNVLKELVK 82
PLH+AA H+ +++ L+K
Sbjct: 115 TPLHLAADTGHLEIVEVLLK 134
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D+ +PLHLAA G+L+IV L+ N A D G PLH+AA R H+ +++
Sbjct: 42 AEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G+T LHLA +E+
Sbjct: 98 --------VLLKYGADV-NADDTIGSTPLHLAADTGHLEI 128
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D+ ++PLHLAA G+L+IV L+ + ++ A+D GK
Sbjct: 91 GHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKT 148
Query: 64 PLHIA 68
I+
Sbjct: 149 AFDIS 153
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D +G+T LHLA +E+
Sbjct: 68 KNGADV-NALDFSGSTPLHLAAKRGHLEI 95
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAA 88
+PLHLAA G+L++V L+ ++ A+D +G+ PLH+AA H+ V+K
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVK---------- 52
Query: 89 LILMERGVTILHACDDNGNTILHLAVLEKQVEVFYM 124
+L+E G + +A D NG T LHLA +EV +
Sbjct: 53 -LLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKL 86
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L ++ A D +PLHLAA G+L++V L+ ++ A+D +G+
Sbjct: 13 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRT 70
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ V+K L++
Sbjct: 71 PLHLAARNGHLEVVKLLLE 89
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 60 DGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQV 119
+G+ PLH+AA H+ V+K +L+E G + +A D NG T LHLA +
Sbjct: 1 NGRTPLHLAARNGHLEVVK-----------LLLEAGADV-NAKDKNGRTPLHLAARNGHL 48
Query: 120 EVFYM 124
EV +
Sbjct: 49 EVVKL 53
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D+ A+PLHLAA G+L+IV L+ ++ A+D +G
Sbjct: 58 GHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ +++ L+K
Sbjct: 116 PLHLAAYDGHLEIVEVLLK 134
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA G+L+IV L+ + ++ A D G PLH+AA H+ +++
Sbjct: 42 ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G T LHLA + +E+
Sbjct: 98 --------VLLKHGADV-NAKDYEGFTPLHLAAYDGHLEI 128
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ + ++ A+D GK
Sbjct: 91 GHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN-AQDKFGKT 148
Query: 64 PLHIA 68
I+
Sbjct: 149 AFDIS 153
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA H+ +++ L+K
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWD 77
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEVFYMDFDG 128
G T LH DNG+ + +L+ +V D++G
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA H+ +++
Sbjct: 42 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D +G T LHLA E +E+
Sbjct: 98 --------VLLKAGADV-NAKDKDGYTPLHLAAREGHLEI 128
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA +G+L+IV L+ ++ A+D DG
Sbjct: 58 GHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYT 115
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMER-GVTILHACDDNGNTIL 110
PLH+AA H+ +++ L+K A + ++ G T DNGN L
Sbjct: 116 PLHLAAREGHLEIVEVLLK--AGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D DG PLH+AA H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D +G T LHLA E +E+
Sbjct: 68 KAGADV-NAKDKDGYTPLHLAAREGHLEI 95
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D+ +PLHLAA G+L+IV L+ ++ A DI G PLH+AA+ H+ +++
Sbjct: 42 ATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVF 122
+L++ G + +A D G+T LHLA + +E+
Sbjct: 98 --------VLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIV 129
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A+D ++PLHLAA G+L+IV L+ ++ A D G
Sbjct: 58 GHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AAI H+ +++ L+K
Sbjct: 116 PLHLAAIMGHLEIVEVLLK 134
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+L+GHL+ V+ +L+ ++ A+D+ +PLHLAA G+L+IV L+ ++ A+D
Sbjct: 88 ALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKF 145
Query: 61 GKNPLHIA 68
GK I+
Sbjct: 146 GKTAFDIS 153
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEVF 122
+ G + +A D G+T LHLA L +E+
Sbjct: 68 KHGADV-NAIDIXGSTPLHLAALIGHLEIV 96
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA H+ +++
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVE--- 85
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D +G T LHLA E +E+
Sbjct: 86 --------VLLKAGADV-NAKDKDGYTPLHLAAREGHLEI 116
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 14/118 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA +G+L+IV L+ ++ A+D DG
Sbjct: 46 GHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYT 103
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
PLH+AA H+ +++ +L++ G + +A D G T LA+ E ++
Sbjct: 104 PLHLAAREGHLEIVE-----------VLLKAGADV-NAQDKFGKTPFDLAIREGHEDI 149
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D DG PLH+AA H+ +++ +L+
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-----------VLL 55
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D +G T LHLA E +E+
Sbjct: 56 KAGADV-NAKDKDGYTPLHLAAREGHLEI 83
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA H+ +++
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVE--- 85
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D +G T LHLA E +E+
Sbjct: 86 --------VLLKAGADV-NAKDKDGYTPLHLAAREGHLEI 116
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA +G+L+IV L+ ++ A+D DG
Sbjct: 46 GHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYT 103
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ +++ L+K
Sbjct: 104 PLHLAAREGHLEIVEVLLK 122
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D DG PLH+AA H+ +++ +L+
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-----------VLL 55
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D +G T LHLA E +E+
Sbjct: 56 KAGADV-NAKDKDGYTPLHLAAREGHLEI 83
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+ GHL+ V+ +L+ ++ A D+ ++PLHLAA G+L+IV L+ N A+D +
Sbjct: 55 AYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDN 112
Query: 61 GKNPLHIAAIRRHVNVLKELVK 82
G PLH+AA R H+ +++ L+K
Sbjct: 113 GITPLHLAANRGHLEIVEVLLK 134
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA G+L+IV L+ N A D G PLH+AA H+ +++
Sbjct: 42 AADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A DDNG T LHLA +E+
Sbjct: 98 --------VLLKNGADV-NAKDDNGITPLHLAANRGHLEI 128
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 3 LGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK 62
GHL+ V+ +L+ ++ A D +PLHLAA +G+L+IV L+ + ++ A+D GK
Sbjct: 90 FGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGK 147
Query: 63 NPLHIA 68
I+
Sbjct: 148 TAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAAA G+L+IV L+ ++ A D DG
Sbjct: 58 GHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ +++ L+K
Sbjct: 116 PLHLAAKYGHLEIVEVLLK 134
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D+ +PLHLAA+ G+L+IV L+ N A D+ G PLH+AA H+ +++
Sbjct: 42 ATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D++G+T LHLA +E+
Sbjct: 98 --------VLLKHGADV-NAYDNDGHTPLHLAAKYGHLEI 128
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D+ +PLHLAA G+L+IV L+ ++ A+D GK
Sbjct: 91 GHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGKT 148
Query: 64 PLHIA 68
I+
Sbjct: 149 AFDIS 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 3 LGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK 62
GHL+ V+ +L+ ++ A DS +PLHLAA +G+L+IV L+ N A D G
Sbjct: 57 FGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGF 114
Query: 63 NPLHIAAIRRHVNVLKELVK 82
PLH+AA R H+ +++ L+K
Sbjct: 115 TPLHLAAKRGHLEIVEVLLK 134
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA G+L+IV L+ N A+D G PLH+AA R H+ +++
Sbjct: 42 ARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D +G T LHLA +E+
Sbjct: 98 --------VLLKNGADV-NASDSHGFTPLHLAAKRGHLEI 128
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAAA G L+IV L+ N A D G PLH+AA H+ +++
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVE--- 89
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G T LHLA L Q+E+
Sbjct: 90 --------VLLKHGADV-NAYDRAGWTPLHLAALSGQLEI 120
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G L+ V+ +L+ ++ A DS +PLHLAA G+L+IV L+ ++ A D G
Sbjct: 50 GQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWT 107
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA+ + +++ L+K
Sbjct: 108 PLHLAALSGQLEIVEVLLK 126
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G L+IV L+ D++ ++
Sbjct: 83 GHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHGA------DVNAQD 135
Query: 64 PLHIAAIRRHVNVLKE 79
L + A +N +E
Sbjct: 136 ALGLTAFDISINQGQE 151
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 76 VLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L+ G+ ILM G + +A DDNG T LHLA Q+E+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEI 54
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D+ +PLHLAA G+L+IV L+ ++ A DI G PLH+AA+ H+ +++
Sbjct: 42 ATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVF 122
+L++ G + +A D G+T LHLA + +E+
Sbjct: 98 --------VLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIV 129
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A+D ++PLHLAA G+L+IV L+ ++ A D G
Sbjct: 58 GHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AAI H+ +++ L+K
Sbjct: 116 PLHLAAIMGHLEIVEVLLK 134
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+L+GHL+ V+ +L+ ++ A+D+ +PLHLAA G+L+IV L+ ++ A+D
Sbjct: 88 ALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKF 145
Query: 61 GKNPLHIA 68
GK I+
Sbjct: 146 GKTAFDIS 153
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEVF 122
+ G + +A D G+T LHLA L +E+
Sbjct: 68 KHGADV-NAIDIMGSTPLHLAALIGHLEIV 96
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G+ D V++++ ++ A DS +PLH AA G+ ++V L+S ++ A+D DG+
Sbjct: 15 GNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRT 72
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFY 123
PLH AA H KE+VK +L+ +G + +A D +G T LH A EV
Sbjct: 73 PLHHAAENGH----KEVVK-------LLISKGADV-NAKDSDGRTPLHHAAENGHKEVVK 120
Query: 124 M 124
+
Sbjct: 121 L 121
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V+ ++ + ++ A DS +PLH AA G+ ++V L+S ++ + D DG+
Sbjct: 81 GHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRT 138
Query: 64 PLHIAAIRRHVNVLKELVK 82
PL +A R H N +E+VK
Sbjct: 139 PLDLA--REHGN--EEVVK 153
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+ +GH + V+ +L+ ++ A D+ +PLHLAA G+L+IV L+ + ++ A+D
Sbjct: 55 AWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN-AQDAY 112
Query: 61 GKNPLHIAAIRRHVNVLKELVK 82
G PLH+AA R H+ +++ L+K
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLK 134
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D + ++PLHLAA G+ +IV L+ ++ ARD DG PLH+AA H+ +++
Sbjct: 42 AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G T LHLA +E+
Sbjct: 98 --------VLLKYGADV-NAQDAYGLTPLHLAADRGHLEI 128
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D+ +PLHLAA +G+L+IV L+ ++ A+D GK
Sbjct: 91 GHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKT 148
Query: 64 PLHIA 68
I+
Sbjct: 149 AFDIS 153
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA G P+ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-----------IGHPEIVEVLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D +G T LHLA +E+
Sbjct: 68 KHGADV-NARDTDGWTPLHLAADNGHLEI 95
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A+D+ +PLHLAA G+L+IV L+ ++ A D+ G PLH+AA+ H+ +++
Sbjct: 42 AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G+T LHLA E +E+
Sbjct: 98 --------VLLKYGADV-NAFDMTGSTPLHLAADEGHLEI 128
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ + ++ A D+ G
Sbjct: 58 GHLEIVEVLLKHGADVDAA-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGST 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ +++ L+K
Sbjct: 116 PLHLAADEGHLEIVEVLLK 134
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
++ GHL+ V+ +L+ ++ A D ++PLHLAA +G+L+IV L+ + ++ A+D
Sbjct: 88 AMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN-AQDKF 145
Query: 61 GKNPLHIA 68
GK I+
Sbjct: 146 GKTAFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ ++ +L+ ++ A D +PLHLAA +G+L+IV L+ + ++ A D G
Sbjct: 58 GHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-AMDYQGYT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA H+ +++ L+K
Sbjct: 116 PLHLAAEDGHLEIVEVLLK 134
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAA 88
+PLHL G+L+I+ L+ + ++ A D G PLH+AA R H+ +++
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVE---------- 97
Query: 89 LILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G T LHLA + +E+
Sbjct: 98 -VLLKYGADV-NAMDYQGYTPLHLAAEDGHLEI 128
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A+D + +PLHLAA G+L+IV L+ + ++ A+D GK
Sbjct: 91 GHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKT 148
Query: 64 PLHIA 68
I+
Sbjct: 149 AFDIS 153
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G+ D V+++L + A DS +PLH AA G+ +IV L+S + A+D DG+
Sbjct: 15 GNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRT 72
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFY 123
PLH AA H KE+VK +L+ +G +A D +G T LH A E+
Sbjct: 73 PLHYAAENGH----KEIVK-------LLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVK 120
Query: 124 M----DFDGNNMDSN 134
+ D N DS+
Sbjct: 121 LLLSKGADPNTSDSD 135
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V+ +L + + A DS +PLH AA G+ +IV L+S + + D DG+
Sbjct: 81 GHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS-DSDGRT 138
Query: 64 PLHIAAIRRHVNVLKELVK 82
PL +A R H N +E+VK
Sbjct: 139 PLDLA--REHGN--EEIVK 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D+ +PLHLAA G+L+IV L+ ++ A D+ G PLH+AA H+ +++
Sbjct: 42 AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D +G T LHLA +E+
Sbjct: 98 --------VLLKNGADV-NAMDSDGMTPLHLAAKWGYLEI 128
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ N A D DG
Sbjct: 58 GHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA ++ +++ L+K
Sbjct: 116 PLHLAAKWGYLEIVEVLLK 134
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+ GHL+ V+ +L+ ++ A+DS +PLHLAA GYL+IV L+ ++ A+D
Sbjct: 88 AYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKF 145
Query: 61 GKNPLHIA 68
GK I+
Sbjct: 146 GKTAFDIS 153
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 1 SLLGHLDFVQEILRR--KPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARD 58
S +GHL V+ +L+R P ++ + + +PLH+AA G+ ++ L+ N A+
Sbjct: 22 SFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKA 77
Query: 59 IDGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQ 118
D + PLH AA H N++K L++ L G T LH G+ LA+LEK+
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 119 VEVFYMDFDG 128
M G
Sbjct: 137 ASQACMTKKG 146
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 3 LGHLDFVQEILRRK--PELAGALDSRKASPLHLAAAKGYLDIVLKLVSFN-PEMCFARDI 59
+GH + V+ +L P LA + +PLH+AA +G+++ VL L+ + C +
Sbjct: 90 IGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-- 144
Query: 60 DGKNPLHIAAIRRHVNVLKELVK--GRPQAA--------------------LILMERGVT 97
G PLH+AA V V + L++ P AA +L+ RG +
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 98 ILHACDDNGNTILHLAVLEKQVEV 121
H+ NG T LH+A + QVEV
Sbjct: 205 P-HSPAWNGYTPLHIAAKQNQVEV 227
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 20 AGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKE 79
A A + +PLHLAA +G+ ++V L+S G PLH+ A HV V
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADV 296
Query: 80 LVK-GRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
L+K G A M G T LH GN L +L+ Q +V
Sbjct: 297 LIKHGVMVDATTRM--GYTPLHVASHYGNIKLVKFLLQHQADV 337
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
V E+L + A +PLH+A LDIV KL+ + +G PLHIA
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIA 219
Query: 69 AIRRHVNVLKELVK--GRPQAALILMERGVTILHACDDNGNTILHLAVLEKQ 118
A + V V + L++ G A + +GVT LH G+ + +L KQ
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESV---QGVTPLHLAAQEGHAEMVALLLSKQ 268
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQ-- 86
+PLH+A+ G+L IV L+ + ++ + PLH+AA H V K L++ + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 87 ------------AALILMERGVTILHACDDN-------GNTILHLAVLEKQVEV 121
AA I V +L + N G+T LH+A E VE
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 128
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
SPLH AA +G+ DIV L+ N DG PL IA
Sbjct: 346 SPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIA 384
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A+D +PLHLAA +G+L+IV L+ ++ ARDI G+ PLH+AA H+ +++
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAV 114
+L+E G + +A D G T +++
Sbjct: 98 --------VLLEYGADV-NAQDKFGKTAFDISI 121
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ + ++ A+D GK
Sbjct: 58 GHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKT 115
Query: 64 PLHIA 68
I+
Sbjct: 116 AFDIS 120
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L A + D ++++ N A D G PLH+AA R H+ +++ +L+
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D G T LHLA +E+
Sbjct: 68 KHGADV-NARDIWGRTPLHLAATVGHLEI 95
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+L G D + +L+ AGA ++ +A PLHLA +G+ +V L+ N + +D+
Sbjct: 94 ALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLS 151
Query: 61 GKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVE 120
G PL A H ELV +L++ G +I +A ++ GNT LH AV+EK V
Sbjct: 152 GNTPLIYACSGGH----HELVA-------LLLQHGASI-NASNNKGNTALHEAVIEKHVF 199
Query: 121 VFYM 124
V +
Sbjct: 200 VVEL 203
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
ALD +PLHLAA G+L+IV L+ + ++ A D G PLH+AAIR H+ +++ L+
Sbjct: 42 ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 82 K 82
K
Sbjct: 101 K 101
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 3 LGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK 62
LGHL+ V+ +L+ ++ A D+ +PLHLAA +G+L+IV L+ ++ A+D GK
Sbjct: 57 LGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN-AQDKFGK 114
Query: 63 NPLHIA 68
I+
Sbjct: 115 TAFDIS 120
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D DG PLH+AA H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D+ G T LHLA + +E+
Sbjct: 68 KYGADV-NAEDNFGITPLHLAAIRGHLEI 95
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+ GHL+ V+ +L+ ++ A DS +PLHLAA +G+L++V L+ N A D +
Sbjct: 55 AYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHN 112
Query: 61 GKNPLHIAAIRRHVNVLKELVK 82
G PLH+AA H+ +++ L+K
Sbjct: 113 GFTPLHLAANIGHLEIVEVLLK 134
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA G+L+IV L+ N A D G PLH+AA R H+ V++
Sbjct: 42 ASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D NG T LHLA +E+
Sbjct: 98 --------VLLKNGADV-NANDHNGFTPLHLAANIGHLEI 128
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ ++ A+D GK
Sbjct: 91 GHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGKT 148
Query: 64 PLHIA 68
I+
Sbjct: 149 AFDIS 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA KG+L+IV L+ ++ A D G PLH+AA+ H+ +++
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G T LHLA +E+
Sbjct: 98 --------VLLKNGADV-NATDTYGFTPLHLAADAGHLEI 128
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
++ GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ N A D
Sbjct: 55 AIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTY 112
Query: 61 GKNPLHIAAIRRHVNVLKELVK 82
G PLH+AA H+ +++ L+K
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLK 134
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D GK PLH+AAI+ H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D G+T LHLA L +E+
Sbjct: 68 KHGADV-NAADKMGDTPLHLAALYGHLEI 95
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
+L GHL+ V+ +L+ ++ A D+ +PLHLAA G+L+IV L+ + ++ A+D
Sbjct: 88 ALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKF 145
Query: 61 GKNPLHIA 68
GK I+
Sbjct: 146 GKTAFDIS 153
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A+D +PL LAA G+L+IV L+ N A D++G
Sbjct: 58 GHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHT 115
Query: 64 PLHIAAIRRHVNVLKELVK 82
PLH+AA+ H+ +++ L+K
Sbjct: 116 PLHLAAMFGHLEIVEVLLK 134
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D+ +PLHLAA G+L+IV L+ N A D G PL +AA+ H+ +++
Sbjct: 42 AEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D G+T LHLA + +E+
Sbjct: 98 --------VLLKNGADV-NANDMEGHTPLHLAAMFGHLEI 128
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A+D +PLHLAA +G+L+IV L+ ++ A DI G+ PLH+AA H+ +++
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAV 114
+L+E G + +A D G T +++
Sbjct: 98 --------VLLEYGADV-NAQDKFGKTAFDISI 121
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A D +PLHLAA G+L+IV L+ + ++ A+D GK
Sbjct: 58 GHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKT 115
Query: 64 PLHIA 68
I+
Sbjct: 116 AFDIS 120
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L A + D ++++ N A D G PLH+AA R H+ +++ +L+
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D G T LHLA +E+
Sbjct: 68 KHGADV-NASDIWGRTPLHLAATVGHLEI 95
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAA 88
+PLH AA G+ + V KL+S ++ AR DG PLH+AA H ++K
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVK---------- 59
Query: 89 LILMERGVTILHACDDNGNTILHLAVLEKQVEVFYM 124
+L+ +G + +A +GNT HLA E+ +
Sbjct: 60 -LLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKL 93
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 60 DGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQV 119
DG PLH AA H +K+ L+ +G + +A +GNT LHLA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKK-----------LLSKGADV-NARSKDGNTPLHLAAKNGHA 55
Query: 120 EVFYM 124
E+ +
Sbjct: 56 EIVKL 60
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A+D +PLHLAA +G+L+IV L+ ++ A D G+ PLH+AA H+ +++
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHLAATVGHLEIVE--- 97
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAV 114
+L+E G + +A D G T +++
Sbjct: 98 --------VLLEYGADV-NAQDKFGKTAFDISI 121
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A DS +PLHLAA G+L+IV L+ + ++ A+D GK
Sbjct: 58 GHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKT 115
Query: 64 PLHIA 68
I+
Sbjct: 116 AFDIS 120
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L A + D ++++ N A D G PLH+AA R H+ +++ +L+
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D G T LHLA +E+
Sbjct: 68 KHGADV-NASDSWGRTPLHLAATVGHLEI 95
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D + +PLHLAA +L+IV L+ ++ A D DG PLH+AA+ H+ +++ L+
Sbjct: 42 ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 82 K 82
K
Sbjct: 101 K 101
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D++G+T LHLA L +E+
Sbjct: 68 KHGADV-NAHDNDGSTPLHLAALFGHLEI 95
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 5 HLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNP 64
HL+ V+ +L+ ++ A D+ ++PLHLAA G+L+IV L+ ++ A+D GK
Sbjct: 59 HLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN-AQDKFGKTA 116
Query: 65 LHIA 68
I+
Sbjct: 117 FDIS 120
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 27 KASPLHLAAAKGYLDIVLKLVS--FNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGR 84
K SPLH AA G++DI LV N + C D + PL AA H+ +K L+K
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKA- 66
Query: 85 PQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMDFDGNNMDSNI 135
AL+ + D G+T LHLA + EV MD N
Sbjct: 67 --GALVDPK---------DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Query: 5 HLDFVQEILRRKPELAGAL----DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
HL+ V+ +++ AGAL D+ ++ LHLAA KG+ ++V L+S +D
Sbjct: 56 HLEAVKYLIK-----AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 61 GKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVE 120
G P+ A +HV+++K +L+ +G I + D+ N LH A V+
Sbjct: 111 GWTPMIWATEYKHVDLVK-----------LLLSKGSDI-NIRDNEENICLHWAAFSGCVD 158
Query: 121 V 121
+
Sbjct: 159 I 159
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G +D + +L K +L A++ SPLH+AA + D V+ +S + ++ ++ +G+
Sbjct: 155 GCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-KNKEGET 212
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAA 88
PL A++ V ++ K +A
Sbjct: 213 PLQCASLNSQVWSALQMSKALQDSA 237
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD ++E + LA D + LH A + G+ +IV L+ + +D G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWS 75
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFY 123
PLHIAA GR + L+ +G + +A + NG T LH A + + E+
Sbjct: 76 PLHIAA-----------SAGRDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAV 123
Query: 124 MDFDG 128
M +G
Sbjct: 124 MLLEG 128
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D A+ +H AAAKG L +V L+ + +D +G PLH+A V K LV
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLV 192
Query: 82 KGRPQAALILME 93
Q A I +E
Sbjct: 193 ---TQGASIYIE 201
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 1 SLLGHLDFVQEILRR--KPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARD 58
SL G D VQ I+ P L + + LH A G+ +IV LV F + A D
Sbjct: 45 SLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAAD 100
Query: 59 IDGKNPLHIAAIRRHVNVLKELVK 82
DG PLH AA +V V K LV+
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 1 SLLGHLDFVQEILRR--KPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARD 58
SL G D VQ I+ P L + + LH A G+ +IV LV F + A D
Sbjct: 45 SLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAAD 100
Query: 59 IDGKNPLHIAAIRRHVNVLKELVK 82
DG PLH AA +V V K LV+
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD ++E + LA D + LH A + G+ +IV L+ + +D G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWS 75
Query: 64 PLHIAAIRRHVNVLKEL-VKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVF 122
PLHIAA ++K L VKG ++A + NG T LH A + + E+
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAH-------------VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 123 YMDFDG 128
M +G
Sbjct: 123 VMLLEG 128
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D A+ +H AAAKG L +V L+ + +D +G PLH+A V K LV
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLV 192
Query: 82 KGRPQAALILME 93
Q A I +E
Sbjct: 193 ---TQGASIYIE 201
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 26/120 (21%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D SPLH+AA+ G +IV L+ + A + +G PLH AA + + L++G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 84 --RPQAA---------------------LILMERGVTILHACDDNGNTILHLAVLEKQVE 120
P A ++L + T + D GNT LHLA E++VE
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVE 186
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 17 PELAGALDSRKASP----------LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLH 66
PE+A L R A+P +H AA G+LD + L+ F ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 67 IAAIRRHVNVLKELVK 82
+AA H+ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD +Q +L + ++ D+ PLHLAA +G+L +V LV R+ G
Sbjct: 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 64 PLHIA 68
+A
Sbjct: 140 ACDLA 144
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 17 PELAGALDSRKASP----------LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLH 66
PE+A L R A+P +H AA G+LD + L+ F ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 67 IAAIRRHVNVLKELVK 82
+AA H+ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD +Q +L + ++ D+ PLHLAA +G+L +V LV R+ G
Sbjct: 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 64 PLHIA 68
+A
Sbjct: 140 ACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 17 PELAGALDSRKASP----------LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLH 66
PE+A L R A+P +H AA G+LD + L+ F ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 67 IAAIRRHVNVLKELVK 82
+AA H+ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD +Q +L + ++ D+ PLHLAA +G+L +V LV R+ G
Sbjct: 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 64 PLHIA 68
+A
Sbjct: 140 ACDLA 144
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
+PLHLAA G+L+IV L+ ++ + G+ PLH+AA H+ +++ L+K
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLK 101
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D +++++ N A D G PLH+AA+ H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A + G T LHLA +E+
Sbjct: 68 KNGADV-NATGNTGRTPLHLAAWADHLEI 95
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 1 SLLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDID 60
++LGHL+ V+ +L+ ++ A + +PLHLAA +L+IV L+ ++ A+D
Sbjct: 55 AMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN-AQDKF 112
Query: 61 GKNPLHIA 68
GK I+
Sbjct: 113 GKTAFDIS 120
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
+PLHLAA+ G+ DIV KL+ + ++ A + G PLH A V ++LV
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D SPLH A +G +V L+ + D PLH+AA H +++++L++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 89
Query: 84 RPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ ++A +++GN LH A Q +V
Sbjct: 90 KAD------------INAVNEHGNVPLHYACFWGQDQV 115
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 12 ILRRKPELAGAL----------DSRKASPLHLAAAKGYLDI--VLKLVSFNPEM---CFA 56
++ +PE+A AL D R +PLHLA +G L VL P + A
Sbjct: 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Query: 57 RDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAV 114
+ +G LH+A+I ++ +++ LV + V C NG T LHLAV
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVS---------LGADVNAQEPC--NGRTALHLAV 159
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 27 KASPLHLAAAKGYLDIVLKLVS--FNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGR 84
+ +PLHLA +I L+ +PE+ RD G PLH+A + + + L +
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 85 PQAALILMERGVTILHACDDNGNTILHLAVL 115
L +IL A + NG+T LHLA +
Sbjct: 102 TTPHL------HSILKATNYNGHTCLHLASI 126
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 31 LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
LHLA+ GYL IV LVS ++ +G+ LH+A ++ +++ L+K
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 17 PELAGALDSRKASP----------LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLH 66
PE+A L R A+P +H AA G LD + L+ F ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 67 IAAIRRHVNVLKELVK 82
+AA H+ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD +Q +L + ++ D+ PLHLAA +G+L +V LV R+ G
Sbjct: 81 GQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 64 PLHIA 68
+A
Sbjct: 140 ACDLA 144
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
+PLHLAA+ G+ DIV KL+ + ++ A + G PLH A V ++LV
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D SPLH A +G +V L+ + D PLH+AA H +++++L++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 94
Query: 84 RPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ ++A +++GN LH A Q +V
Sbjct: 95 KAD------------INAVNEHGNVPLHYACFWGQDQV 120
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 30/141 (21%)
Query: 18 ELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVL 77
+L G L+S +PLH A +G+L +V++L+ + + D +G + +H+AA H +++
Sbjct: 70 QLGGDLNS---TPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIV 125
Query: 78 KELVKGRPQAALILMERGVTIL-------HACDD-----------------NGNTILHLA 113
L+ + Q ++ + G+T L H+ D + NT LH A
Sbjct: 126 AYLI-AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184
Query: 114 VLEKQVEVFYMDFD-GNNMDS 133
VL V + + G N+D+
Sbjct: 185 VLAGNTTVISLLLEAGANVDA 205
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D RK++PLHLAA + IV L+ ++ A+D G PLH A H V +
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTE--- 108
Query: 82 KGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+L++ G + +A D T LH A + +VEV
Sbjct: 109 --------LLLKHGACV-NAMDLWQFTPLHEAASKNRVEV 139
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
V E+L RK + +PLH+AA + + D++ L +M A D G+ LH A
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRA 287
Query: 69 AIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFY 123
A+ H+ + L+ ++I ++ G T ++ IL + + +V Y
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQ-GFTAAQMGNEAVQQILSESTPMRTSDVDY 341
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 12 ILRRKPELAGAL----------DSRKASPLHLAAAKGYLDI--VLKLVSFNPEM---CFA 56
++ +PE+A AL D R +PLHLA +G L VL P + A
Sbjct: 50 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 109
Query: 57 RDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAV 114
+ +G LH+A+I ++ +++ LV + V C NG T LHLAV
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVS---------LGADVNAQEPC--NGRTALHLAV 156
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 27 KASPLHLAAAKGYLDIVLKLVS--FNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGR 84
+ +PLHLA +I L+ +PE+ RD G PLH+A + + + L +
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 85 PQAALILMERGVTILHACDDNGNTILHLA 113
L +IL A + NG+T LHLA
Sbjct: 99 TTPHL------HSILKATNYNGHTCLHLA 121
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 31 LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
LHLA+ GYL IV LVS ++ +G+ LH+A ++ +++ L+K
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSF--NPEMCFARDIDGKNPLH 66
VQE+L KP L D PLH + + +I L+S N + D G P H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 67 IAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
IA ++ V+K L RP L+ + G T LHLAV +K EV
Sbjct: 78 IACSVGNLEVVKSLYD-RPLKP---------DLNKITNQGVTCLHLAVGKKWFEV 122
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 30 PLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAAL 89
PLH A + V +L+ P + +D DG+ PLH + + + L L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--------L 56
Query: 90 ILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMDFD 127
ME V + DD+G T H+A +EV +D
Sbjct: 57 SKMEN-VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 30 PLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAAL 89
PLH AA+ G L ++ L +D G PL A L +G AA+
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-----------LAEGHGDAAV 191
Query: 90 ILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMD 125
+L+E+ D+ G +A L +QV+ F+++
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVA-LNEQVKKFFLN 226
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PL+LA A G+L+IV L+ N A D G PLH+AA H+ + + L+
Sbjct: 42 AKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Query: 82 K 82
K
Sbjct: 101 K 101
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GHL+ V+ +L+ ++ A+D+ +PLHLAA G+L+I L+ ++ A+D GK
Sbjct: 58 GHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKT 115
Query: 64 PLHIA 68
I+
Sbjct: 116 AFDIS 120
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D G PL++A H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D G T LHLA +E+
Sbjct: 68 KNGADV-NAVDAIGFTPLHLAAFIGHLEI 95
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSF--NPEMCFARDIDGKNPLH 66
VQE+L KP L D PLH + + +I L+S N + D G P H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 67 IAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
IA ++ V+K L RP L+ + G T LHLAV +K EV
Sbjct: 78 IACSVGNLEVVKSLYD-RPLKP---------DLNKITNQGVTCLHLAVGKKWFEV 122
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 30 PLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAAL 89
PLH A + V +L+ P + +D DG+ PLH + + + L L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--------L 56
Query: 90 ILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMDFD 127
ME V + DD+G T H+A +EV +D
Sbjct: 57 SKMEN-VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 30 PLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAAL 89
PLH AA+ G L ++ L +D G PL A L +G AA+
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-----------LAEGHGDAAV 191
Query: 90 ILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMD 125
+L+E+ D+ G +A L +QV+ F+++
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVA-LNEQVKKFFLN 226
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +A+ +H AAAKG L ++ L+ + +D +G PLH+A V K LV
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLV 193
Query: 82 KGRPQAALILME 93
Q A I +E
Sbjct: 194 S---QGASIYIE 202
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D SPLH+AA+ G +IV L+ ++ A + +G PLH AA + + L++G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 84 --RPQAA---------------------LILMERGVTILHACDDNGNTILHLAVLEKQVE 120
P A ++L + T + D GNT LHLA E++VE
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ--DTEGNTPLHLACDEERVE 187
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +A+ +H AAAKG L ++ L+ + +D +G PLH+A V K LV
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLV 192
Query: 82 KGRPQAALILME 93
Q A I +E
Sbjct: 193 S---QGASIYIE 201
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D SPLH+AA+ G +IV L+ ++ A + +G PLH AA + + L++G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 84 --RPQAA---------------------LILMERGVTILHACDDNGNTILHLAVLEKQVE 120
P A ++L + T + D GNT LHLA E++VE
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ--DTEGNTPLHLACDEERVE 186
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSF--NPEMCFARDIDGKNPLH 66
VQE+L KP L D PLH + + +I L+S N + D G P H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 67 IAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
IA ++ V+K L RP L+ + G T LHLAV +K EV
Sbjct: 78 IACSVGNLEVVKSLYD-RPLK---------PDLNKITNQGVTCLHLAVGKKWFEV 122
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 30 PLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAAL 89
PLH A + V +L+ P + +D DG+ PLH + + + L L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--------L 56
Query: 90 ILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMDFD 127
ME V + DD+G T H+A +EV +D
Sbjct: 57 SKMEN-VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 30 PLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAAL 89
PLH AA+ G L ++ L +D G PL A L +G AA+
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-----------LAEGHGDAAV 191
Query: 90 ILMERGVTILHACDDNGNTILHLAVLEKQVEVFYMD 125
+L+E+ D+ G +A L +QV+ F+++
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVA-LNEQVKKFFLN 226
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELV 81
A D +PLHLAA +L+IV L+ N A D G+ PLH+ A+ H+ +++ L+
Sbjct: 42 AEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 82 K 82
K
Sbjct: 101 K 101
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 HLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNP 64
HL+ V+ +L+ ++ A+D+ +PLHL A G+L+IV L+ ++ A+D GK
Sbjct: 59 HLEIVEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN-AQDKFGKTA 116
Query: 65 LHIA 68
I+
Sbjct: 117 FDIS 120
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A D G PLH+AA+ H+ +++ +L+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVE-----------VLL 67
Query: 93 ERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ G + +A D G T LHL + +E+
Sbjct: 68 KNGADV-NAIDAIGETPLHLVAMYGHLEI 95
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD ++E LR+ L D R +PL A+A G ++ V L+ + G +
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----------GAD 61
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAV 114
P HI A R + G +L+ER V I + D NG T L AV
Sbjct: 62 P-HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAV 110
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 46/147 (31%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCF----ARDIDGKNPLHIAAIRRHVNVLKELVK-- 82
+ LH+AA L+ + L+ PE+ F + +G+ LHIA I ++VN+++ L+
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 83 ---------------------------------GRPQAALILMERGVTILHACDDNGNTI 109
G + +L+E G I A D GNT+
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTV 157
Query: 110 LHLAVLEK------QVEVFYMDFDGNN 130
LH+ +L+ Q+ + +DG +
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGD 184
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAA 88
SPL LAA + + + KL+ F R G+ LHIAA+ ++ L++ P+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE-- 62
Query: 89 LILMERGVTILHACDDNGNTILHLAVLEKQV 119
++ E + L+ G T LH+AV+ + V
Sbjct: 63 -LVFEPMTSELY----EGQTALHIAVINQNV 88
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD ++E LR+ L D R +PL A+A G ++ V L+ + G +
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----------GAD 61
Query: 64 PLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAV 114
P HI A R + G +L+ER V I + D NG T L AV
Sbjct: 62 P-HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAV 110
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 28 ASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAA 69
+ LH+AAAKGY +++ L+ ++ +D DG PLH AA
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAA 240
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHI 67
D+ PLH AA+ GYLDI L+S + A + +G PL I
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDI 145
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 AAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
A + G + VL+L+ ++ +A ++DG LH A I +V+++K LV+
Sbjct: 47 ACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVE 94
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 17 PELAGALDSRKASP----------LHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLH 66
PE+A L R A+P +H AA G+LD + L+ ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI-EDNEGNLPLH 108
Query: 67 IAAIRRHVNVLKELVK 82
+AA H+ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G LD +Q +L + ++ D+ PLHLAA +G+L +V LV R+ G
Sbjct: 81 GFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 64 PLHIA 68
+A
Sbjct: 140 ACDLA 144
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 23 LDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
++ R+++PLH AA + +V L+ ++ A+D G PLH A H V + LVK
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK 98
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 21 GALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGK--NPLHIAAIRRHVNVLK 78
G+ +S L AA G ++ V KL + C RDI+G+ PLH AA V+V++
Sbjct: 4 GSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 79 ELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
L++ G + HA D G LH A EV
Sbjct: 62 -----------YLLQHGADV-HAKDKGGLVPLHNACSYGHYEV 92
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V E+L + + D K +PLH AAAKG +I L+ + ++ DG
Sbjct: 88 GHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNT 145
Query: 64 PL 65
PL
Sbjct: 146 PL 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric
Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric
Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric
Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric
Peptide)
Length = 165
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 23 LDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
++ R+++PLH AA + +V L+ ++ A+D G PLH A H V + LVK
Sbjct: 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK 96
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 21 GALDSRKASPLHLAAAK-GYLDIVLKLVSFNPEMCFARDIDGK--NPLHIAAIRRHVNVL 77
GA+ + +A L AAK G ++ V KL + C RDI+G+ PLH AA V+V+
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSVV 58
Query: 78 KELVKGRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEV 121
+ L++ G + HA D G LH A EV
Sbjct: 59 E-----------YLLQHGADV-HAKDKGGLVPLHNACSYGHYEV 90
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V E+L + + D K +PLH AAAKG +I L+ + ++ DG
Sbjct: 86 GHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNT 143
Query: 64 PL 65
PL
Sbjct: 144 PL 145
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
D SPLHLAA G+ L+ +D + PLH+AA H N+++ L+K
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLK 88
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 4 GHLDFVQEILRRKPELAG-ALDSRKA---SPLHLAAAKGYLDIVLKLVSFNPEMCFARDI 59
GH + +LR AG + D+R +PLH+AA++G+ +IV L+ ++ A+D+
Sbjct: 45 GHFSTTEVLLR-----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDM 98
Query: 60 DGKNPLHIAAIRRHVNVLKELVK 82
LH A H V++ L+K
Sbjct: 99 LKMTALHWATEHNHQEVVELLIK 121
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 23 LDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
++ R+++PLH AA + +V L+ ++ A+D G PLH A H V + LVK
Sbjct: 42 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK 100
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 34 AAAKGYLDIVLKLVSFNPEMCFARDIDGK--NPLHIAAIRRHVNVLKELVKGRPQAALIL 91
AA G ++ V KL + C RDI+G+ PLH AA V+V++ L
Sbjct: 19 AAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSVVE-----------YL 65
Query: 92 MERGVTILHACDDNGNTILHLAVLEKQVEV 121
++ G + HA D G LH A EV
Sbjct: 66 LQHGADV-HAKDKGGLVPLHNACSYGHYEV 94
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
GH + V E+L + + D K +PLH AAAKG +I L+ + ++ DG
Sbjct: 90 GHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNT 147
Query: 64 PL 65
PL
Sbjct: 148 PL 149
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSF 49
GHL V+ +L+ K L + SPLH AA G++DIV L+S+
Sbjct: 54 GHLKVVELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVK 82
D +PLH A G+L +V +L+ + + +PLH AA HV+++K L+
Sbjct: 40 DHAGWTPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 10 QEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAA 69
+E+ +R EL+ P+ + GYL +V L FN E AR + G+N L I A
Sbjct: 6 KELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELIIEA 64
Query: 70 IR 71
R
Sbjct: 65 ER 66
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 10 QEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAA 69
+E+ +R EL+ P+ + GYL +V L FN E AR + G+N L I A
Sbjct: 6 KELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELIIEA 64
Query: 70 IR 71
R
Sbjct: 65 ER 66
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D +G PLH+AA H+ V+K L++ A +
Sbjct: 29 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE--AGADVXAQ 86
Query: 93 ER-GVTILHACDDNGNTIL 110
++ G T DNGN L
Sbjct: 87 DKFGKTAFDISIDNGNEDL 105
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G D V+ ++ ++A A D ++PLHLAA G+L++V L+ ++ A+D GK
Sbjct: 35 GQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKT 92
Query: 64 PLHIA 68
I+
Sbjct: 93 AFDIS 97
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 83 GRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFYM 124
G+ ILM G + A D NG+T LHLA +EV +
Sbjct: 35 GQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKL 75
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D DG PLH+AA H+ +++ L+K A +
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQ 64
Query: 93 ER-GVTILHACDDNGNTIL 110
++ G T DNGN L
Sbjct: 65 DKFGKTAFDISIDNGNEDL 83
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
A D +PLHLAA +G+L+IV L+ ++ A+D GK I+
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDIS 75
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 10 QEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAA 69
+E+ +R EL+ P+ + GYL +V L FN E AR + G+N L I A
Sbjct: 6 KELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELIIEA 64
Query: 70 IR 71
R
Sbjct: 65 ER 66
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 33 LAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILM 92
L AA+ D ++++ N A+D +G PLH+AA H+ V+K +L+
Sbjct: 11 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-----------LLL 59
Query: 93 ERGVTILHACDDNGNTILHLAV 114
E G + +A D G T +++
Sbjct: 60 EAGADV-NAQDKFGKTAFDISI 80
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 4 GHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN 63
G D V+ ++ ++A A D ++PLHLAA G+L++V L+ ++ A+D GK
Sbjct: 17 GQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKT 74
Query: 64 PLHIA 68
I+
Sbjct: 75 AFDIS 79
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 83 GRPQAALILMERGVTILHACDDNGNTILHLAVLEKQVEVFYM 124
G+ ILM G + A D NG+T LHLA +EV +
Sbjct: 17 GQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKL 57
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D+ SP+H AA G+LD + LV ++ A D G P+H+A H +V+ L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVVSFLA-- 129
Query: 84 RPQAALILMERGVTILHACDDNGNTILHLA 113
P+ + LH D +G T L LA
Sbjct: 130 -PE----------SDLHHRDASGLTPLELA 148
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEM-CFARDIDGKNPLHIAAIRRHVNVL 77
ALDS + P+HLA +G+ +V L PE RD G PL +A R N++
Sbjct: 104 ALDSTGSLPIHLAIREGHSSVVSFLA---PESDLHHRDASGLTPLELARQRGAQNLM 157
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 4 GHLDFVQEILRR--KPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDG 61
G + V+ +L+ P+L G + S L LA +KGY DIV L+ ++ D +G
Sbjct: 45 GQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNG 100
Query: 62 KNPLHIAAIRRHVNVLKELVK 82
PL A HV +K L++
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLE 121
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 4 GHLDFVQEILRR--KPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDG 61
G + V+ +L+ P+L G + S L LA +KGY DIV L+ ++ D +G
Sbjct: 47 GQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNG 102
Query: 62 KNPLHIAAIRRHVNVLKELVK 82
PL A HV +K L++
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLE 123
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKG 83
D+ SP+H AA G+LD + LV ++ A D G P+H+A H +V+ L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVVSFLA-- 127
Query: 84 RPQAALILMERGVTILHACDDNGNTILHLA 113
P++ LH D +G T L LA
Sbjct: 128 -PESD----------LHHRDASGLTPLELA 146
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 22 ALDSRKASPLHLAAAKGYLDIVLKLVSFNPEM-CFARDIDGKNPLHIAAIRRHVNVL 77
ALDS + P+HLA +G+ +V L PE RD G PL +A R N++
Sbjct: 102 ALDSTGSLPIHLAIREGHSSVVSFLA---PESDLHHRDASGLTPLELARQRGAQNLM 155
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 4 GHLDFVQEILRR--KPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDG 61
G + V+ +L+ P+L G + S L LA +KGY DIV L+ ++ D +G
Sbjct: 63 GQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNG 118
Query: 62 KNPLHIAAIRRHVNVLKELVK 82
PL A HV +K L++
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLE 139
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLK 78
D+ SP+H AA G+LD + LV ++ D G P+H+A H V+
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVS 118
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 24 DSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLK 78
D+ SP+H AA G+LD + LV ++ D G P+H+A H V+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVS 124
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 19 LAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKN-----PLHIAAIRRH 73
+A D +PLH+A +G L V +LV+ + R++D N PLH+A I
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTL 58
Query: 74 VNVLKELVKGRPQAALILMERGVTILH-ACDDNGNTILHLAVLEKQVEVFYMDFDGNNMD 132
+V++ LV + + L G T H AC+ T L A+L+ +D + N D
Sbjct: 59 PSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLR-ALLDSAAP-GTLDLEARNYD 115
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
+ + + + L D A+ LHLAAA D +L+ + + +D G+ PLH A
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANI-QDNMGRTPLHAA 97
Query: 69 AIRRHVNVLKELVKGRPQAALILMERGVTIL 99
V + L++ R M G T L
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPL 128
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 23/137 (16%)
Query: 8 FVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHI 67
+ ++L + EL +D + LHLAA D +L+ + ++D G+ PLH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHA 90
Query: 68 AAIRRHVNVLKELVKGRPQAALILMERGVTIL----------------------HACDDN 105
A + V + L++ R M G T L +A D++
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 150
Query: 106 GNTILHLAVLEKQVEVF 122
G T LH A E
Sbjct: 151 GKTALHWAAAVNNTEAV 167
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 2 LLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDG 61
L GHL V+ +L+ ++ G + + +PL A G D V L+ + D+
Sbjct: 101 LGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-- 157
Query: 62 KNPLHIAAIRRHVNVLKELV 81
+P+H AA R HV + L+
Sbjct: 158 ASPIHEAARRGHVECVNSLI 177
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDI---DGKNPLHIAAIRRHVNVLKELVKGRP 85
SP+H AA G+ + L+S +A +I D +PLH A + H++ +K L+K
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQG----WAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 86 QAALILMERGVTILHAC 102
Q + + + +AC
Sbjct: 117 QVNGVTADWHTPLFNAC 133
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 2 LLGHLDFVQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLV----SFNPEMCFAR 57
L GHL V+ +L+ ++ G + + +PL A G D V L+ S PE
Sbjct: 45 LGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---- 99
Query: 58 DIDGKNPLHIAAIRRHVNVLKELV 81
D +P+H AA R HV + L+
Sbjct: 100 --DLASPIHEAARRGHVECVNSLI 121
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDI---DGKNPLHIAAIRRHVNVLKELVKGRP 85
SP+H AA G+ + L+S +A +I D +PLH A + H++ +K L+K
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQG----WAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 86 QAALILMERGVTILHAC 102
Q + + + +AC
Sbjct: 61 QVNGVTADWHTPLFNAC 77
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 87 AALILMERGVTILHACDDNGNTILHLAVLEK-QVEVFYMDFDGNNMDS 133
A L+ G ++ AC GN HLA L K Q ++F D D + S
Sbjct: 95 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS 142
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 61 GKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAV 114
G+ PL +AA + +V+ L++ Q A L A D GNT+LH V
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPA---------SLQATDSQGNTVLHALV 185
>pdb|1WDZ|A Chain A, Crystal Structure Of Rcb Domain Of Irsp53
pdb|1WDZ|B Chain B, Crystal Structure Of Rcb Domain Of Irsp53
Length = 242
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 35 AAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHV-NVLKELVKGRPQAALILME 93
AAKGY D ++K+ E ++++ G +A + R + N L+E++K L +E
Sbjct: 51 AAKGYFDALVKMGELASESQGSKEL-GDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLE 109
Query: 94 RGVTI 98
+ V +
Sbjct: 110 QKVEL 114
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 56 ARDIDGKNPLHIAAIRRHVNVLKELVKGR 84
A+ DG LH AA+ + LK L+KGR
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGR 249
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 56 ARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVL 115
A + DG PLH+A I + +++ +L + G + G T LHLAV
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVR-----------LLRDAGADLNKPEPTCGRTPLHLAVE 201
Query: 116 EKQVEVFYM 124
+ V +
Sbjct: 202 AQAASVLEL 210
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 56 ARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVL 115
A + DG PLH+A I + +++ +L + G + G T LHLAV
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVR-----------LLRDAGADLNKPEPTCGRTPLHLAVE 201
Query: 116 EKQVEVFYM 124
+ V +
Sbjct: 202 AQAASVLEL 210
>pdb|2YKT|A Chain A, Crystal Structure Of The I-Bar Domain Of Irsp53 (Baiap2)
In Complex With An Ehec Derived Tir Peptide
Length = 253
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 35 AAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHV-NVLKELVKGRPQAALILME 93
AAKGY D ++K+ E ++++ G +A + R + N L+E++K L +E
Sbjct: 51 AAKGYFDALVKMGELASESQGSKEL-GDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLE 109
Query: 94 RGVTI 98
+ V +
Sbjct: 110 QKVEL 114
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 56 ARDIDGKNPLHIAAIRRHVNVLKELVKGR 84
A+ DG LH AA+ + LK L+KGR
Sbjct: 202 AKAADGNTALHYAALYNQPDCLKLLLKGR 230
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 61 GKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVL 115
G+ PL +AA + +V+ L++ Q A L A D GNT+LH V+
Sbjct: 149 GELPLSLAACTKQWDVVTYLLENPHQPA---------SLEATDSLGNTVLHALVM 194
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 61 GKNPLHIAAIRRHVNVLKELVKGRPQAALILMERGVTILHACDDNGNTILHLAVL 115
G+ PL +AA + +V+ L++ Q A L A D GNT+LH V+
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPA---------SLEATDSLGNTVLHALVM 181
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
+ + + + L D + LHLAA D +L+ + + ++ G+ PLH A
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAA 98
Query: 69 AIRRHVNVLKELVKGRPQAALILMERGVTIL 99
V + L++ R M G T L
Sbjct: 99 VSADAQGVFQILIRNRATDLDARMHDGTTPL 129
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
+ + + + L D + LHLAA D +L+ + + ++ G+ PLH A
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAA 97
Query: 69 AIRRHVNVLKELVKGRPQAALILMERGVTIL 99
V + L++ R M G T L
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPL 128
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 29 SPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIAAIRRHVNVLKELVKGRPQAA 88
+ LH AA IV LV +D DGK P+ +AA +GR +
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAA-----------QEGRIEVV 329
Query: 89 LILMERGVTILHACDDNGNTILHLA 113
L+++G ++ A D +T LA
Sbjct: 330 XYLIQQGASV-EAVDATDHTARQLA 353
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 9 VQEILRRKPELAGALDSRKASPLHLAAAKGYLDIVLKLVSFNPEMCFARDIDGKNPLHIA 68
+ + + + L D + LHLAA D +L+ + + ++ G+ PLH A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAA 65
Query: 69 AIRRHVNVLKELVKGRPQAALILMERGVTIL 99
V + L++ R M G T L
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,041,496
Number of Sequences: 62578
Number of extensions: 154107
Number of successful extensions: 984
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 272
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)