BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039866
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 593 bits (1528), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/416 (68%), Positives = 350/416 (84%), Gaps = 10/416 (2%)
Query: 13 DDQLSSMTTDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYL 72
D ++ +++T ++ ++LLDNEIR+ + ELQR + E + EK+K+N+EKIK N+QLPYL
Sbjct: 19 DQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYL 78
Query: 73 VGNIVEILEMNP-ED----EAEEDGANIDLDSQRKGKCVVLKTS-----YPSVVGLVDPD 122
V N+VE+++MN ED E+ G N++LD+ GK V+KTS + +VGLVDPD
Sbjct: 79 VANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPD 138
Query: 123 KLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIV 182
KLKP DLVGVNKDSYLILDTLPSE+DSRVKAMEVDEKPTE Y+D+GGL+KQI+EL+EAIV
Sbjct: 139 KLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIV 198
Query: 183 LPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD 242
LPM ++F+ +G+R PKG L+YGPPGTGKTL+ARACAAQTNATFLKLA PQLVQM+IG+
Sbjct: 199 LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258
Query: 243 GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD 302
GAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE SGDREVQRTMLELLNQLDGFSSD
Sbjct: 259 GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318
Query: 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEE 362
DR+KV+AATNR D+LDPAL+RSGRLDRKIE P PSE++RA+ILQIHSRKMT D+N++E
Sbjct: 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQE 378
Query: 363 LARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 418
LARSTD+FNGAQLKAV VEAGM+ALR + V HEDF EGI +VQA+K S+++YA
Sbjct: 379 LARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVSFYA 434
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 319 bits (817), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/299 (50%), Positives = 212/299 (70%)
Query: 112 YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 171
Y S++ VD + L+PG V ++ + I+ L + D V M++D+ PTE Y+DIGGLE
Sbjct: 129 YVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLE 188
Query: 172 KQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231
QIQE+ E++ LP+TH E ++++G++PPKGV+LYG PGTGKTL+A+A A QT+ATFL++
Sbjct: 189 SQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248
Query: 232 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291
G +L+Q ++GDG +L R F++A E +P I+FIDEIDAIGTKR+DS G+RE+QRTMLE
Sbjct: 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE 308
Query: 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351
LLNQLDGF +KVI ATN+ + LDPAL+R GR+DRKI +P + +IL IH+ K
Sbjct: 309 LLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368
Query: 352 MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 410
M + DVN E L + DD +GA ++A+C EAG+LALR +V EDF + +V K
Sbjct: 369 MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 148/254 (58%), Positives = 194/254 (76%)
Query: 150 RVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPG 209
R KAMEVDE+P Y DIGGLEKQ+QE+ E + LP+ H E F+K+G+ PPKG+LLYGPPG
Sbjct: 2 RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG 61
Query: 210 TGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA 269
TGKTL+A+A A +TNATF+++ G +LV+ FIG+GA LV+D F+LAKEK+P IIFIDEIDA
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 270 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDR 329
I KR D+ GDREVQRT+++LL ++DGF + +K+I ATNR DILDPA++R GR DR
Sbjct: 122 IAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 181
Query: 330 KIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389
IE+P P E+ R IL+IH+RKM + DVN EE+A+ T+ GA+LKA+C EAGM A+R
Sbjct: 182 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
Query: 390 DATEVNHEDFNEGI 403
V +DF + +
Sbjct: 242 LRDYVTMDDFRKAV 255
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 238/380 (62%), Gaps = 16/380 (4%)
Query: 34 EIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGA 93
+IR E ++R + ++ +KV+ +++++L ++ VG +++I+
Sbjct: 33 KIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIV----------SDK 82
Query: 94 NIDLDSQRKGKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKA 153
+ + Q +GK +V V ++ LK V + DSY++ L ++ D V
Sbjct: 83 KVLVKVQPEGKYIV------DVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSL 136
Query: 154 MEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 213
M V++ P Y+ +GGL KQI+E+ E I LP+ H E F+ LG+ PKGV+LYGPPGTGKT
Sbjct: 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKT 196
Query: 214 LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273
L+ARA A T+ F++++G +LVQ +IG+G+++VR+ F +A+E +P IIF+DEID+IG+
Sbjct: 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST 256
Query: 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEL 333
R + GD EVQRTMLELLNQLDGF + IK+I ATNR DILDPAL+R GR+DRKIE
Sbjct: 257 RVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
Query: 334 PHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 393
P PS ARA IL+IHSRKM + +N ++A + +GA +K VC EAGM ALR
Sbjct: 317 PPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376
Query: 394 VNHEDFNEGIIQVQAKKKAS 413
V EDF + +V K + +
Sbjct: 377 VTQEDFELAVGKVMNKNQET 396
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 297 bits (760), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 205/308 (66%), Gaps = 5/308 (1%)
Query: 115 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 171
VVGL V P ++ G VGV++ Y I LP D V M V+EKP Y+D+GG +
Sbjct: 156 VVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCK 215
Query: 172 KQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231
QI++L E + LP+ ERF LG+ PPKG+LLYGPPGTGKTL ARA A +T+ATF+++
Sbjct: 216 DQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275
Query: 232 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291
G +LVQ ++G+GA++VR+ F++A+ K CIIF DEIDA+G RFD GD EVQRTMLE
Sbjct: 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE 335
Query: 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351
L+ QLDGF IKV+ ATNR + LDPAL+R GR+DRK+E P E RA I +IHS+
Sbjct: 336 LITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395
Query: 352 MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA--K 409
M+V + +E ++R + GA+L++VC EAGM A+R +DF + + +V + K
Sbjct: 396 MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455
Query: 410 KKASLNYY 417
K +S + Y
Sbjct: 456 KFSSTSRY 463
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 278 bits (711), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 217/351 (61%), Gaps = 17/351 (4%)
Query: 53 KEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSY 112
K ++K QE++K + +P ++G +E P D+ N + S G V++
Sbjct: 76 KRELKRAQEEVKRIQSVPLVIGQFLE-----PIDQ------NTGIVSSTTGMSYVVR--- 121
Query: 113 PSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEK 172
++ +D + LKP V +++ S ++D LP + DS + M +EKP Y D+GGL+
Sbjct: 122 --ILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDM 179
Query: 173 QIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232
Q QE+ EA+ LP+ + ++++G+ PP+GVLLYGPPGTGKT++ +A A T A F+++ G
Sbjct: 180 QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239
Query: 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 292
+ V ++G+G ++VRD F+LA+E +P IIFIDE+D+I TKRFD++ DREVQR ++EL
Sbjct: 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIEL 299
Query: 293 LNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR-ILQIHSRK 351
L Q+DGF +KVI ATNRAD LDPAL+R GRLDRKIE P + R I + K
Sbjct: 300 LTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK 359
Query: 352 MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402
M++ P+ + + L D +GA + A+ EAG+ A+R++ + D E
Sbjct: 360 MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEA 410
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/312 (45%), Positives = 200/312 (64%), Gaps = 4/312 (1%)
Query: 104 KCVVLKTSYPS-VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 159
K +V +S P +VG+ VD KLK G V ++ + I+ LP E D V M E+
Sbjct: 116 KYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQ 175
Query: 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 219
++ IGGL +QI+EL E I LP+ + E FQ++G++PPKGVLLYGPPGTGKTL+A+A
Sbjct: 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAV 235
Query: 220 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279
AA A F+ +V +IG+ A+++R+ F AKE PCIIF+DE+DAIG +RF
Sbjct: 236 AATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT 295
Query: 280 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE 339
S DRE+QRT++ELL Q+DGF + + K+I ATNR D LDPAL+R GRLDRK+E+P P+E
Sbjct: 296 SADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355
Query: 340 ARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 399
R I +IH+ K+ + +FE + +D FNGA ++ EAG A+R D +N +D
Sbjct: 356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDL 415
Query: 400 NEGIIQVQAKKK 411
+ + +V KK
Sbjct: 416 MKAVRKVAEVKK 427
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 156/245 (63%), Gaps = 1/245 (0%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
+ D+GG E+ I+EL E + + +F ++G R PKG+LL GPPGTGKTL+ARA A +
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
N F ++G V++F+G GA VRD F AK +PCI+FIDEIDA+G R G
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E ++T+ +LL ++DGF S + I V+AATNR DILDPAL+R GR D+KI + P R +
Sbjct: 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403
IL+IH+R + DVN E +A+ T F GA L+ + EA +LA R ++ +DF E I
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
Query: 404 IQVQA 408
+V A
Sbjct: 254 DRVIA 258
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
+ D+GG E+ I+EL E + + +F ++G R PKG+LL GPPGTG TL+ARA A +
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
N F ++G V++F+G GA VRD F AK +PCI+FIDEIDA+G R G
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E ++T+ +LL ++DGF S + I V+AATNR DILDPAL+R GR D+KI + P R +
Sbjct: 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403
IL+IH+R + DVN E +A+ T F GA L+ + EA +LA R ++ +DF E I
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
Query: 404 IQVQA 408
+V A
Sbjct: 254 DRVIA 258
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 159/248 (64%), Gaps = 3/248 (1%)
Query: 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMAR 217
EKP + D+ G E+ +E++E IV + + ER+ LG + PKGVLL GPPGTGKTL+A+
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 218 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR-FD 276
A A + + F + G ++MF+G GA VRD F+ AK+++P IIFIDEIDAIG R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 277 SEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPH 335
VSG+ E ++T+ +LL ++DGF S++ + V+AATNR +ILDPALMR GR DR++ +
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 395
P R IL++H + + + DVN +E+A+ T GA L + EA +LA R + EV
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 396 HEDFNEGI 403
+ E +
Sbjct: 243 QQHLKEAV 250
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 1/236 (0%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
+ D+ G ++ +E+ E +V + RFQKLG + PKGVL+ GPPGTGKTL+A+A A +
Sbjct: 11 FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
F ++G V+MF+G GA VRD F+ AK+ +PCIIFIDEIDA+G +R G
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E ++T+ ++L ++DGF ++ I VIAATNR D+LDPAL+R GR DR++ + P R +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 399
IL++H R++ + PD++ +AR T F+GA L + EA + A R + V+ +F
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 245
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
A F + GP+++ G+ +R AF+ A++ +P IIFIDE+DAI KR + G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEV 320
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E +R + +LL +DG + V+AATNR + +DPAL R GR DR++++ P R
Sbjct: 321 E-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
ILQIH++ M + DV+ E++A T GA L A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
A F + GP+++ G+ +R AF+ A++ +P IIFIDE+DAI KR + G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEV 320
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E +R + +LL +DG + V+AATNR + +DPAL R GR DR++++ P R
Sbjct: 321 E-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
ILQIH++ M + DV+ E++A T GA L A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
A F + GP+++ G+ +R AF+ A++ +P IIFIDE+DAI KR + G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEV 320
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E +R + +LL +DG + V+AATNR + +DPAL R GR DR++++ P R
Sbjct: 321 E-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
ILQIH++ M + DV+ E++A T GA L A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
A F + GP+++ G+ +R AF+ A++ +P IIFIDE+DAI KR + G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEV 320
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E +R + +LL +DG + V+AATNR + +DPAL R GR DR++++ P R
Sbjct: 321 E-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
ILQIH++ M + DV+ E++A T GA L A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 145/231 (62%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
V E P + DIGGLE +EL E + P+ H ++F K G+ P KGVL YGPPG GKTL+
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + A F+ + GP+L+ M+ G+ VR+ F A++ +PC++F DE+D+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH 335
+ G R + ++L ++DG S+ + +I ATNR DI+DPA++R GRLD+ I +P
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386
P E++R IL+ + RK V DV+ E LA+ T+ F+GA L +C A LA
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
Y+D+GG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
A F + GP+++ G+ +R AF+ A++ +P IIFIDE+DAI KR + G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEV 320
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E +R + +LL +DG + V+AATNR + +DPAL R GR DR++++ P R
Sbjct: 321 E-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
ILQIH++ M + DV+ E++A T GA L A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223
Y+D+GG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 224 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 283
A F + GP+++ G+ +R AF+ A++ +P IIFIDE+DAI KR + G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEV 320
Query: 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343
E +R + +LL +DG + V+AATNR + +DPAL R GR DR++++ P R
Sbjct: 321 E-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
ILQIH++ M + DV+ E++A T GA L A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 145/231 (62%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
V E P + DIGGLE +EL E + P+ H ++F K G+ P KGVL YGPPG GKTL+
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + A F+ + GP+L+ M+ G+ VR+ F A++ +PC++F DE+D+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH 335
+ G R + ++L ++DG S+ + +I ATNR DI+DPA++R GRLD+ I +P
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386
P E++R IL+ + RK V DV+ E LA+ T+ F+GA L +C A LA
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 145/231 (62%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
V E P + DIGGLE +EL E + P+ H ++F K G+ P KGVL YGPPG GKTL+
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + A F+ + GP+L+ M+ G+ VR+ F A++ +PC++F DE+D+I R
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH 335
+ G R + ++L ++DG S+ + +I ATNR DI+DPA++R GRLD+ I +P
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185
Query: 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386
P E++R IL+ + RK V DV+ E LA+ T+ F+GA L +C A LA
Sbjct: 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 165/270 (61%), Gaps = 4/270 (1%)
Query: 149 SRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPP 208
++ +A + E P + D+ G E+ +EL + IV + + RF ++G R PKGVLL GPP
Sbjct: 15 TKSRARVLTEAPKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPP 73
Query: 209 GTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 268
G GKT +ARA A + F+ +G V+MF+G GA VRD F+ AK +PCI+FIDEID
Sbjct: 74 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 133
Query: 269 AIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 328
A+G KR G+ E ++T+ +LL ++DGF D I V+AATNR DILDPAL+R GR D
Sbjct: 134 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD 193
Query: 329 RKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388
R+I + P + R +IL+IH+R + DV+ LA+ T F GA L+ + EA +LA R
Sbjct: 194 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253
Query: 389 RDATEVNHEDFNEG---IIQVQAKKKASLN 415
++ +D E ++ + AKK L+
Sbjct: 254 EGRRKITMKDLEEAADRVMMLPAKKSLVLS 283
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 165/270 (61%), Gaps = 4/270 (1%)
Query: 149 SRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPP 208
++ +A + E P + D+ G E+ +EL + IV + + RF ++G R PKGVLL GPP
Sbjct: 24 TKSRARVLTEAPKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPP 82
Query: 209 GTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 268
G GKT +ARA A + F+ +G V+MF+G GA VRD F+ AK +PCI+FIDEID
Sbjct: 83 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 142
Query: 269 AIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 328
A+G KR G+ E ++T+ +LL ++DGF D I V+AATNR DILDPAL+R GR D
Sbjct: 143 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD 202
Query: 329 RKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388
R+I + P + R +IL+IH+R + DV+ LA+ T F GA L+ + EA +LA R
Sbjct: 203 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262
Query: 389 RDATEVNHEDFNEG---IIQVQAKKKASLN 415
++ +D E ++ + AKK L+
Sbjct: 263 EGRRKITMKDLEEAADRVMMLPAKKSLVLS 292
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 143/225 (63%), Gaps = 1/225 (0%)
Query: 149 SRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPP 208
++ +A + E P + D+ G E+ +EL + IV + + RF ++G R PKGVLL GPP
Sbjct: 24 TKSRARVLTEAPKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPP 82
Query: 209 GTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 268
G GKT +ARA A + F+ +G V+MF+G GA VRD F+ AK +PCI+FIDEID
Sbjct: 83 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 142
Query: 269 AIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 328
A+G KR G+ E ++T+ +LL ++DGF D I V+AATNR DILDPAL+R GR D
Sbjct: 143 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD 202
Query: 329 RKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGA 373
R+I + P + R +IL+IH+R + DV+ LA+ T F GA
Sbjct: 203 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 247
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 1/216 (0%)
Query: 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMAR 217
E P + D+ G E+ +EL + IV + + RF ++G R PKGVLL GPPG GKT +AR
Sbjct: 9 EAPKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67
Query: 218 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 277
A A + F+ +G V+MF+G GA VRD F+ AK +PCI+FIDEIDA+G KR
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127
Query: 278 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPS 337
G+ E ++T+ +LL ++DGF D I V+AATNR DILDPAL+R GR DR+I + P
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187
Query: 338 EEARARILQIHSRKMTVHPDVNFEELARSTDDFNGA 373
+ R +IL+IH+R + DV+ LA+ T F GA
Sbjct: 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 223
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 19/265 (7%)
Query: 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 219
P + DIG LE +EL AI+ P+ + ++F+ LG+ P GVLL GPPG GKTL+A+A
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 220 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279
A ++ F+ + GP+L+ M++G+ + VR FQ AK +PC+IF DE+DA+ +R D E
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124
Query: 280 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE 339
R + +LL ++DG + ++ ++AATNR DI+DPA++R GRLD+ + + P
Sbjct: 125 GAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 340 ARARILQIHSRKMTVHP---DVNFEELAR--STDDFNGAQLKAVCVEAGMLALRRDAT-- 392
R IL+ ++ T P DVN E +A D + GA L A+ EA + ALR++
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241
Query: 393 ---------EVNHEDFNEGIIQVQA 408
+V+H+ F E +V++
Sbjct: 242 KSGNEKGELKVSHKHFEEAFKKVRS 266
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 154/253 (60%), Gaps = 12/253 (4%)
Query: 163 DYNDIGGLEK---QIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 219
+ D+ G+ + +++E ++ + P ERF +LG + PKG LL GPPG GKTL+A+A
Sbjct: 4 SFKDVAGMHEAKLEVREFVDYLKSP----ERFLQLGAKVPKGALLLGPPGCGKTLLAKAV 59
Query: 220 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279
A + FL +AG + V++ G GA VR F+ A+ ++PCI++IDEIDA+G KR + +
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR-STTM 118
Query: 280 SG--DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPS 337
SG + E ++T+ +LL ++DG + D + V+A+TNRADILD ALMR GRLDR + + P+
Sbjct: 119 SGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
Query: 338 EEARARILQIH--SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 395
+ R I + H S K+T + LA T F+GA + +C EA + A R T V+
Sbjct: 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVH 238
Query: 396 HEDFNEGIIQVQA 408
+F + +V A
Sbjct: 239 TLNFEYAVERVLA 251
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 141/237 (59%), Gaps = 11/237 (4%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR-PPKGVLLYGPPGTGKTL 214
+D P ++ DI G+E + E +V PM + F G+R PPKG+LL+GPPGTGKTL
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT--GLRGPPKGILLFGPPGTGKTL 132
Query: 215 MARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274
+ + A+Q+ ATF ++ L ++G+G K+VR F +A+ + P +IFIDEID++ ++R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 275 FDSEVSGDREVQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 332
D E R ++ E L QLDG SS+DRI V+ ATNR +D A R RL +++
Sbjct: 193 GDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLY 247
Query: 333 LPHPSEEARARI-LQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388
+P P AR +I + + S++ + E++ + +D F+GA + +C EA + +R
Sbjct: 248 IPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 139/238 (58%), Gaps = 11/238 (4%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPP-KGVLLYGPPGTGKTL 214
V E+P ++D+ GLE + L EA++LP+ F G R P +G+LL+GPPGTGK+
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSY 182
Query: 215 MARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273
+A+A A + N +TF ++ LV ++G+ KLV++ FQLA+E P IIFIDEID++
Sbjct: 183 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 242
Query: 274 RFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIE 332
R ++E R R E L Q+ G D D I V+ ATN +LD A+ R R +++I
Sbjct: 243 RSENESEAAR---RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 297
Query: 333 LPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389
+P P ARA + ++H + +F+EL R TD ++GA + + +A M +R+
Sbjct: 298 IPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 139/238 (58%), Gaps = 11/238 (4%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPP-KGVLLYGPPGTGKTL 214
V E+P ++D+ GLE + L EA++LP+ F G R P +G+LL+GPPGTGK+
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSY 60
Query: 215 MARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273
+A+A A + N +TF ++ LV ++G+ KLV++ FQLA+E P IIFIDEID++
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 274 RFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIE 332
R ++E R ++ E L Q+ G D D I V+ ATN +LD A+ R R +++I
Sbjct: 121 RSENESEAARRIKT---EFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 333 LPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389
+P P ARA + ++H + +F EL R TD ++GA + + +A M +R+
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 139/247 (56%), Gaps = 8/247 (3%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
+ EKP + D+ GLE + L EA++LP+ F K +P G+LLYGPPGTGK+ +
Sbjct: 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYL 100
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + N+TF ++ LV ++G+ KLV+ F +A+E P IIFID++DA+ R
Sbjct: 101 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 160
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELP 334
+ E R ++ ELL Q++G +D + + V+ ATN LD A+ R R +R+I +P
Sbjct: 161 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 215
Query: 335 HPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 393
P AR + +I+ +V ++ L T+ ++G+ + V +A M +R+ +
Sbjct: 216 LPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275
Query: 394 VNHEDFN 400
+ +D +
Sbjct: 276 THFKDVS 282
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 138/247 (55%), Gaps = 8/247 (3%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
+ EKP + D+ GLE + L EA++LP+ F K +P G+LLYGPPGTGK+ +
Sbjct: 18 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYL 76
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + N+TF ++ LV ++G+ KLV+ F +A+E P IIFIDE+DA+ R
Sbjct: 77 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRG 136
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELP 334
+ E R ++ ELL Q++G +D + + V+ ATN LD A+ R R +R+I +P
Sbjct: 137 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 191
Query: 335 HPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 393
P AR + +I+ V ++ L T+ ++G+ + V +A M +R+ +
Sbjct: 192 LPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 251
Query: 394 VNHEDFN 400
+ +D +
Sbjct: 252 THFKDVS 258
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 138/247 (55%), Gaps = 8/247 (3%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
+ EKP + D+ GLE + L EA++LP+ F K +P G+LLYGPPGTGK+ +
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYL 67
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + N+TF ++ LV ++G+ KLV+ F +A+E P IIFID++DA+ R
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELP 334
+ E R ++ ELL Q++G +D + + V+ ATN LD A+ R R +R+I +P
Sbjct: 128 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 335 HPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 393
P AR + +I+ V ++ L T+ ++G+ + V +A M +R+ +
Sbjct: 183 LPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242
Query: 394 VNHEDFN 400
+ +D +
Sbjct: 243 THFKDVS 249
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 137/245 (55%), Gaps = 8/245 (3%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
+ EKP + D+ GLE + L EA++LP+ F K +P G+LLYGPPGTGK+ +
Sbjct: 27 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYL 85
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A A + N+TF ++ LV ++G+ KLV+ F +A+E P IIFID++DA+ R
Sbjct: 86 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 145
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELP 334
+ E R ++ ELL Q++G +D + + V+ ATN LD A+ R R +R+I +P
Sbjct: 146 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 200
Query: 335 HPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 393
P AR + +I+ V ++ L T+ ++G+ + V +A M +R+ +
Sbjct: 201 LPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 260
Query: 394 VNHED 398
+ +D
Sbjct: 261 THFKD 265
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 9/236 (3%)
Query: 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
VD ++DI G + Q L E ++LP E F L P +G+LL+GPPG GKT++
Sbjct: 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTML 164
Query: 216 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275
A+A AA++NATF ++ L ++G+G KLVR F +A+E P IIFID++D++ +R
Sbjct: 165 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224
Query: 276 DSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIEL 333
+ E R R E L + DG S DDR+ V+ ATNR LD A++R R +++ +
Sbjct: 225 EGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYV 279
Query: 334 PHPSEEARARILQIHSRKM-TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388
P+EE R +L+ K + +LAR TD ++G+ L A+ +A + +R
Sbjct: 280 SLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 144/270 (53%), Gaps = 19/270 (7%)
Query: 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPP-KGVLLYGPPGTGKTLMARACAA 221
++ DI G + Q L E ++LP E F G+R P KG+LL+GPPG GKTL+ARA A
Sbjct: 19 EWTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVAT 76
Query: 222 QTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSG 281
+ +ATFL ++ L ++GDG KLVR F +A+ P IIFIDE+D++ ++R SE
Sbjct: 77 ECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136
Query: 282 DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEAR 341
R ++ L + L G DRI V+AATNR LD A +R R +++ + P E+ R
Sbjct: 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194
Query: 342 ARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------- 393
+L +K D LA+ TD ++G+ L A+ +A + +R E
Sbjct: 195 ELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDI 254
Query: 394 -----VNHEDFNEGIIQV-QAKKKASLNYY 417
+ +DF+ + ++ ++ SLN Y
Sbjct: 255 SAMRAITEQDFHSSLKRIRRSVAPQSLNSY 284
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 395
P+EEAR IL+IHSRKM + +N ++A +GA++K VC EAGM ALR V
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 396 HEDFNEGIIQVQAK 409
EDF + +V K
Sbjct: 71 QEDFEMAVAKVMQK 84
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 334 PHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 393
P P+EEAR IL+IHSRK + +N ++A +GA++K VC EAG ALR
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 394 VNHEDFNEGIIQVQAK 409
V EDF + +V K
Sbjct: 61 VTQEDFEXAVAKVXQK 76
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 395
P E RA I +IHS+ M+V + +E ++R + GA+L++VC EAGM A+R
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 396 HEDFNEGIIQVQA--KKKASLNYY 417
+DF + + +V + KK +S + Y
Sbjct: 68 EKDFLKAVDKVISGYKKFSSTSRY 91
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDGA-KLVRDAFQLA-- 254
PK +L+ GP G GKT +AR A NA F+K+ + ++ ++G ++RD A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 255 ---KEKSPCIIFIDEIDAIGTKRFDSEVSGDRE-VQRTMLEL-----LNQLDGFSSDDRI 305
+ I+FIDEID I K S RE VQR +L L ++ G D I
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 306 KVIAA----TNRADILDPALMRSGRLDRKIELPHPSEEARARIL 345
IA+ R L P L GRL ++EL S RIL
Sbjct: 170 LFIASGAFQVARPSDLIPEL--QGRLPIRVELTALSAADFERIL 211
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 339 EARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398
E RA I +IHS+ +V + +E ++R + GA+L++VC EAG A+R +D
Sbjct: 4 EGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKD 63
Query: 399 FNEGIIQVQA--KKKASLNYY 417
F + + +V + KK +S + Y
Sbjct: 64 FLKAVDKVISGYKKFSSTSRY 84
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 178 IEAIVLPMTHKERFQKLGVRPPKG----VLLYGP-PGTGKTLMARACAAQTNATFLKLAG 232
I+ +LP KE F+ + KG ++L+ P PGTGKT +A+A NA + + G
Sbjct: 25 IDECILPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81
Query: 233 PQLVQMFI-GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291
F+ G A ++K +I IDE D SG E QR
Sbjct: 82 SDCKIDFVRGPLTNFASAASFDGRQK---VIVIDEFDR----------SGLAESQR---H 125
Query: 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351
L + ++ +SS+ I +I A N I+ P R R I P++E + +++ R+
Sbjct: 126 LRSFMEAYSSNCSI-IITANNIDGIIKPLQSRC----RVITFGQPTDEDKIEMMKQMIRR 180
Query: 352 MT 353
+T
Sbjct: 181 LT 182
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPC- 260
++L+GPPGTGKT +A A NA +++ + G K +R+A + A++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 261 ---IIFIDEI 267
I+F+DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 23/108 (21%)
Query: 202 VLLYGPPGTGKTLMARACA-------AQTNATFLKLAGPQLVQMFIGDG-----AKLVRD 249
+LL GP G+GKTLMA+ A A ++AT L AG ++G+ +L++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAG------YVGEDVENILTRLLQA 128
Query: 250 AFQLAKEKSPCIIFIDEIDAIG----TKRFDSEVSGDREVQRTMLELL 293
+ ++ I+FIDEID I + +VSG+ VQ+ +L+++
Sbjct: 129 SDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEG-VQQALLKIV 175
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIG 241
PK +L+ GP G GKT +AR A NA F+K+ + ++ ++G
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 92
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIG 241
PK +L+ GP G GKT +AR A NA F+K+ + ++ ++G
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 99
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIG 241
PK +L+ GP G GKT +AR A NA F+K+ + ++ ++G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIG 241
PK +L+ GP G GKT +AR A NA F+K+ + ++ ++G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 261 IIFIDEIDAIGTKRFDSEVSGDRE-VQRTMLEL-----LNQLDGFSSDDRIKVIAA---- 310
I+FIDEID I K S RE VQR +L L ++ G D I IA+
Sbjct: 253 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 312
Query: 311 TNRADILDPALMRSGRLDRKIELPHPSEEARARIL 345
R L P L GRL ++EL S RIL
Sbjct: 313 VARPSDLIPEL--QGRLPIRVELTALSAADFERIL 345
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 344 ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403
I + KM + +V+ E+ D +GA + ++C E+GMLA+R + V +DF +
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68
Query: 404 IQVQAKKKASLNYY 417
V K + +Y
Sbjct: 69 KTVIKKDEQEHEFY 82
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
VLL GPPG GKT +A A++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
VLL GPPG GKT +A A++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
VLL GPPG GKT +A A++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
VLL GPPG GKT +A A++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIG 241
PK +L GP G GKT +AR A NA F+K+ + ++ ++G
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
VLL GPPG GKT +A A++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 25/215 (11%)
Query: 177 LIEAIVLPMTHKERFQKL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235
++ +V+ +T + F KL ++ P + ++G G GK+ + + ++ +L
Sbjct: 15 FMDKLVVHIT--KNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72
Query: 236 VQMFIGDGAKLV----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291
G+ AKL+ R+A ++ ++ + C +FI+++DA G R Q
Sbjct: 73 ESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNAT 131
Query: 292 LLN--------QLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEA 340
L+N QL G + + R+ +I N L L+R GR+++ P+ E
Sbjct: 132 LMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189
Query: 341 RARILQIHSRKMTVHPDVNFEELARSTDDFNGAQL 375
R + R +V E++ + D+F G +
Sbjct: 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSI 220
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
VLL GPPG G+T +A A++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 257
P + +LL+GPPG GKT +A A + +GP + + GD A ++ ++ +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD-- 92
Query: 258 SPCIIFIDEI 267
I+FIDEI
Sbjct: 93 ---ILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 257
P + +LL+GPPG GKT +A A + +GP + + GD A ++ ++ +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD-- 92
Query: 258 SPCIIFIDEI 267
I+FIDEI
Sbjct: 93 ---ILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 257
P + +LL+GPPG GKT +A A + +GP + + GD A ++ ++ +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD-- 92
Query: 258 SPCIIFIDEI 267
I+FIDEI
Sbjct: 93 ---ILFIDEI 99
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 70 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSYPSVVGLVDPDKLKPGDL 129
P LVG + +ILE DG + + S K VV + Y ++ ++LKPG
Sbjct: 37 PLLVGVVSDILE---------DG-RVVVKSSTGPKFVVNTSQY------INEEELKPGAR 80
Query: 130 VGVNKDSYLILDTLPSEYDSRVKAMEVDE 158
V +N+ + I++ LP+ D V EV+E
Sbjct: 81 VALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 70 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSYPSVVGLVDPDKLKPGDL 129
P LVG + +ILE DG + + S K VV + Y ++ ++LKPG
Sbjct: 37 PLLVGVVSDILE---------DG-RVVVKSSTGPKFVVNTSQY------INEEELKPGAR 80
Query: 130 VGVNKDSYLILDTLPSEYDSRVKAMEVDE 158
V +N+ + I++ LP+ D V EV+E
Sbjct: 81 VALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDGA-----KLVRDAFQLAK 255
+LL GP G+GKTL+A A + F L + ++G+ KL++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 256 EKSPCIIFIDEIDAIGTK----RFDSEVSGDREVQRTMLELL 293
+ I++ID+ID I K +VSG+ VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEG-VQQALLKLI 154
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDGA-----KLVRDAFQLAK 255
+LL GP G+GKTL+A A + F L + ++G+ KL++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 256 EKSPCIIFIDEIDAIGTKRFDSEVSGD---REVQRTMLELL 293
+ I++ID+ID I K + ++ D VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233
P VLL GPP +GKT +A A ++N F+K+ P
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP 97
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233
P VLL GPP +GKT +A A ++N F+K+ P
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP 98
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 47/196 (23%)
Query: 171 EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL-- 228
E QI++ I +I+ P+ +E+ P + +YG GTGKT + + ++ + FL
Sbjct: 26 EDQIRK-IASILAPLYREEK--------PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGK 76
Query: 229 ---------KLAGPQLVQM-----------FIG-DGAKLVRDAFQLAKEK-SPCIIFIDE 266
++ P V F G A+L R + ++ S +I +DE
Sbjct: 77 FKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDE 136
Query: 267 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN---RADILDPALMR 323
IDA K+++ ++ L L++++ + +I I TN D+LDP +
Sbjct: 137 IDAF-VKKYNDDI----------LYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKS 185
Query: 324 SGRLDRKIELPHPSEE 339
S + I P+ +EE
Sbjct: 186 SLSEEEIIFPPYNAEE 201
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKLVRDAFQLAKEKSP 259
+L GPPGTGKT A A A F + ++M D G +VR + +P
Sbjct: 41 LLFSGPPGTGKTATAIALARD---LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97
Query: 260 C------IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313
IIF+DE DA+ D++ + ++RTM + +S R +++
Sbjct: 98 IGGAPFKIIFLDEADALTA---DAQAA----LRRTM-------EMYSKSCRF-ILSCNYV 142
Query: 314 ADILDPALMRSGRLDRKIELPHPSEEARARILQI 347
+ I++P R K P P E + R+L+I
Sbjct: 143 SRIIEPIQSRCAVFRFK---PVPKEAMKKRLLEI 173
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKLVRDAFQLAKEKSP 259
+L GPPGTGKT A A A F + ++M D G +VR + +P
Sbjct: 41 LLFSGPPGTGKTATAIALARD---LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97
Query: 260 C------IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313
IIF+DE DA+ D++ + ++RTM + +S R +++
Sbjct: 98 IGGAPFKIIFLDEADALTA---DAQAA----LRRTM-------EMYSKSCRF-ILSCNYV 142
Query: 314 ADILDPALMRSGRLDRKIELPHPSEEARARILQI 347
+ I++P R K P P E + R+L+I
Sbjct: 143 SRIIEPIQSRCAVFRFK---PVPKEAMKKRLLEI 173
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKLVRDAFQLAKEKSP 259
+L YGPPGTGKT A A + + K ++++ D G +VR+ Q+ S
Sbjct: 49 LLFYGPPGTGKTSTIVALARE---IYGKNYSNMVLELNASDDRGIDVVRN--QIKDFAST 103
Query: 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319
IF I D+ + + R ++E ++ + R V+A N A L P
Sbjct: 104 RQIFSKGFKLIILDEADAMTNAAQNALRRVIE------RYTKNTRFCVLA--NYAHKLTP 155
Query: 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD 357
AL+ R LP + E R + +H K+ + P+
Sbjct: 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHE-KLKLSPN 192
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 51/186 (27%)
Query: 151 VKAMEVDEKP-TEDY-----NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLL 204
++ ++V EKP E Y +DI G E ++ L + + K G P +L
Sbjct: 5 IREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRL-----------KHYVKTGSMP--HLLF 51
Query: 205 YGPPGTGKTLMARACAAQ-----TNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSP 259
GPPG GKT A A A + FL+L G ++R+ + P
Sbjct: 52 AGPPGVGKTTAALALARELFGENWRHNFLELNASD------ERGINVIREKVKEFARTKP 105
Query: 260 C------IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313
IIF+DE DA+ + ++RTM + FSS+ R +++
Sbjct: 106 IGGASFKIIFLDEADALTQ-------DAQQALRRTM-------EMFSSNVRF-ILSCNYS 150
Query: 314 ADILDP 319
+ I++P
Sbjct: 151 SKIIEP 156
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 199 PKGV--LLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237
PKG+ L+ G PGTGKT MA AA+ + F L +LV+
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVK 47
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 341 RARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400
R I + KM++ P+ + + L D +GA + A+ EAG+ A+R++ + D
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 401 EG 402
E
Sbjct: 63 EA 64
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 200 KGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 235
+ VLL GPPGTGKT +A A A + + F + G ++
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 200 KGVLLYGPPGTGKTLMARACA 220
+ VLL GPPGTGKT +A A A
Sbjct: 78 RAVLLAGPPGTGKTALALAIA 98
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 181 IVLP----MTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
IV+P + H++ F L + +G++L GPPG+GKT++
Sbjct: 1027 IVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 181 IVLP----MTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 215
IV+P + H++ F L + +G++L GPPG+GKT++
Sbjct: 1246 IVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 200 KGVLLYGPPGTGKTLMA--RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA--- 254
+ VL+ G PGTGKT +A A A + F +AG ++ + L + AF+ +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQ-AFRRSIGV 144
Query: 255 --KEKSPCIIF---IDEIDAIG--TKRFDSEVSGDR-EVQRTMLELLN 294
KE P ++ + EID I T+ F + SGD E++ + E +N
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQIN 192
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 169 GLEKQIQELIEAIVLPMTHKERFQKLGV---RPPKGVLLYGPPGTGKTLMARACAAQTN- 224
GL+ + E L + + R QKLG+ P + G PGTGKT +A A +
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 225 ------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 278
+ + LV +IG A ++ K ++FIDE A R D+E
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAMGGVLFIDE--AYYLYRPDNE 141
Query: 279 VSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRS----GRLDRKIELP 334
R+ + +E+L Q+ + DD + ++A AD ++ + R+ IE P
Sbjct: 142 ----RDYGQEAIEILLQVMENNRDDLVVILAGY--ADRMENFFQSNPGFRSRIAHHIEFP 195
Query: 335 HPSEE 339
S+E
Sbjct: 196 DYSDE 200
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 169 GLEKQIQELIEAIVLPMTHKERFQKLGV---RPPKGVLLYGPPGTGKTLMARACAAQTN- 224
GL+ + E L + + R QKLG+ P G PGTGKT +A A +
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 225 ------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 278
+ + LV +IG A ++ K ++FIDE A R D+E
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAXGGVLFIDE--AYYLYRPDNE 148
Query: 279 VSGDREVQRTMLELLNQLDGFSSDDRIKVIA--ATNRADILDPALMRSGRLDRKIELPHP 336
R+ + +E+L Q+ + DD + ++A A + R+ IE P
Sbjct: 149 ----RDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFFQSNPGFRSRIAHHIEFPDY 204
Query: 337 SEE 339
S+E
Sbjct: 205 SDE 207
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 169 GLEKQIQELIEAIVLPMTHKERFQKLGV---RPPKGVLLYGPPGTGKTLMARACAAQTN- 224
GL+ + E L + + R QKLG+ P + G PGTGKT +A A +
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 225 ------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 278
+ + LV +IG A ++ K ++FIDE A R D+E
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAMGGVLFIDE--AYYLYRPDNE 148
Query: 279 VSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRS----GRLDRKIELP 334
R+ + +E+L Q+ + DD + ++A AD ++ + R+ IE P
Sbjct: 149 ----RDYGQEAIEILLQVMENNRDDLVVILAGY--ADRMENFFQSNPGFRSRIAHHIEFP 202
Query: 335 HPSEE 339
S+E
Sbjct: 203 DYSDE 207
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 30/92 (32%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD-------GAKLVRDAFQ-L 253
+L YGPPGTGKT A + L GP L++ I + G +VR+ +
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKNF 113
Query: 254 AK-----------EKSPC----IIFIDEIDAI 270
A+ E PC II +DE D++
Sbjct: 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 29/187 (15%)
Query: 191 FQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ----------TNATFLKLAGPQLV--QM 238
Q L R LL G G GKT +A A + + T L L+
Sbjct: 199 IQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK 258
Query: 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 298
+ GD K + + ++ + I+FIDEI I G ++ N +
Sbjct: 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTI---------IGAGAASGGQVDAANLIKP 309
Query: 299 FSSDDRIKVIAATNRADIL-----DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT 353
S +I+VI +T + D AL R + KI++ PS E +I+ K
Sbjct: 310 LLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQ---KIDITEPSIEETVQIINGLKPKYE 366
Query: 354 VHPDVNF 360
H DV +
Sbjct: 367 AHHDVRY 373
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 28/137 (20%)
Query: 169 GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKG--VLLYGPPGTGKTLMARACAAQTNAT 226
GLEK + ++E + + QKL + KG + L GPPG GKT +A++ A
Sbjct: 85 GLEKVKERILEYLAV--------QKL-TKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135
Query: 227 FLKLAGPQL---------VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 277
F++++ + + ++G + + A + +P + +DEID + S
Sbjct: 136 FVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID-----KMSS 189
Query: 278 EVSGDREVQRTMLELLN 294
+ GD MLE+L+
Sbjct: 190 DFRGDP--SSAMLEVLD 204
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 200 KGVLLYGPPGTGKT--LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA--- 254
+ VL+ G PGTGKT M A A + F +AG ++ + + L + AF+ +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ-AFRRSIGV 129
Query: 255 --KEKSPCIIFIDEIDAIG--TKRFDSEVSGDR-EVQRTMLELLN 294
K + + + EID I T+ F + SGD E++ + E +N
Sbjct: 130 RIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQIN 174
>pdb|3H43|A Chain A, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|B Chain B, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|C Chain C, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|D Chain D, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|E Chain E, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|F Chain F, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|G Chain G, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|H Chain H, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|I Chain I, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|J Chain J, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|K Chain K, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|L Chain L, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
Length = 85
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 92 GANIDLDSQRKGKCVVLKTSY-PS----VVGLVDPDKLKPGDLVGVNKDSYLILDTLP 144
G +D +RK VV+K+S PS V V+PD L PG V +N+ + ++D LP
Sbjct: 22 GTVVDKVGERK---VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLP 76
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 28 SRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKL 65
S+ L++E+ L+++L+ T ELD Y E +K+ QEK++L
Sbjct: 36 SKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 200 KGVLLYGPPGTGKTLMARACA 220
+ +LYGPPG GKT A A
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVA 98
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCI 261
+L GP G GKT +A + + +A A P + + GD A + L I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXIEKS--GDLAAI------LTNLSEGDI 109
Query: 262 IFIDEI 267
+FIDEI
Sbjct: 110 LFIDEI 115
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 202 VLLYGPPGTGKTLMAR---ACAAQTNATFLKL 230
VL++G GTGK L+AR AC+A+++ + L
Sbjct: 28 VLIHGDSGTGKELVARALHACSARSDRPLVTL 59
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
Length = 284
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 28 SRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKL 65
S+ L++E+ L+++L+ T ELD Y E +K+ QEK++L
Sbjct: 36 SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLEL 73
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 149 SRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLP----------MTHKERFQKLGVRP 198
S +K VDE Y L +++++I LP + H + + V
Sbjct: 311 SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ 370
Query: 199 PKGVLLYGPPGTGKTLMARAC----AAQTNATFL-----KLAGPQLVQMFIGDGAKLVR 248
L+ GPPGTGKT+ + A Q N L +A QL + G K+VR
Sbjct: 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 429
>pdb|1Y0R|A Chain A, Crystal Structure Of The Tetrahedral Aminopeptidase From
P. Horikoshii
pdb|1Y0Y|A Chain A, Crystal Structure Of Tetrahedral Aminopeptidase From P.
Horikoshii In Complex With Amastatin
Length = 353
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 292
P Q+FI GA+ +A + + I + ++ +G RF S DR T+LE+
Sbjct: 134 PDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEV 193
Query: 293 LNQLDGFSSD--------DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE----- 339
QL +D + + + A A ++P + + ++P E
Sbjct: 194 AKQLKDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKQVTH 253
Query: 340 -ARARILQIHSRKMTVHPDV--NFEELAR 365
+ ++I R + HP + EELA+
Sbjct: 254 LGKGTAIKIMDRSVICHPTIVRWLEELAK 282
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 149 SRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLP----------MTHKERFQKLGVRP 198
S +K VDE Y L +++++I LP + H + + V
Sbjct: 134 SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ 193
Query: 199 PKGVLLYGPPGTGKTLMARAC----AAQTNATFL-----KLAGPQLVQMFIGDGAKLVR 248
L+ GPPGTGKT+ + A Q N L +A QL + G K+VR
Sbjct: 194 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 252
>pdb|1XFO|A Chain A, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|B Chain B, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|C Chain C, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|D Chain D, Crystal Structure Of An Archaeal Aminopeptidase
Length = 357
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 292
P Q+FI GA+ +A + + I + ++ +G RF S DR T+LE+
Sbjct: 138 PDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEV 197
Query: 293 LNQLDGFSSD--------DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE----- 339
QL +D + + + A A ++P + + ++P E
Sbjct: 198 AKQLKDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKQVTH 257
Query: 340 -ARARILQIHSRKMTVHPDV--NFEELAR 365
+ ++I R + HP + EELA+
Sbjct: 258 LGKGTAIKIMDRSVICHPTIVRWLEELAK 286
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 182 VLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACA 220
V+ H K + VLL G PGTGK+++ +A A
Sbjct: 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 149 SRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLP----------MTHKERFQKLGVRP 198
S +K VDE Y L +++++I LP + H + + V
Sbjct: 135 SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ 194
Query: 199 PKGVLLYGPPGTGKTLMARAC----AAQTNATFL-----KLAGPQLVQMFIGDGAKLVR 248
L+ GPPGTGKT+ + A Q N L +A QL + G K+VR
Sbjct: 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 253
>pdb|3QC1|A Chain A, Protein Phosphatase Subunit: Alpha4
Length = 243
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 271 GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPAL 321
G++ +VS E+ +L+QLD FS ++ ++ IA+T+ ++ PAL
Sbjct: 55 GSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPAL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,016,574
Number of Sequences: 62578
Number of extensions: 510760
Number of successful extensions: 1568
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 150
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)