Query 039866
Match_columns 418
No_of_seqs 435 out of 3481
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-74 3.1E-79 540.5 40.1 366 25-411 27-397 (406)
2 KOG0652 26S proteasome regulat 100.0 5.4E-71 1.2E-75 495.1 30.8 418 1-418 1-424 (424)
3 KOG0727 26S proteasome regulat 100.0 1.2E-62 2.6E-67 439.5 28.0 382 17-418 23-408 (408)
4 KOG0726 26S proteasome regulat 100.0 9.5E-61 2.1E-65 434.8 21.2 359 34-413 70-433 (440)
5 KOG0728 26S proteasome regulat 100.0 2.9E-59 6.3E-64 417.3 30.0 370 21-411 19-393 (404)
6 PTZ00454 26S protease regulato 100.0 1.2E-55 2.6E-60 437.5 40.0 379 19-418 15-398 (398)
7 PTZ00361 26 proteosome regulat 100.0 1.8E-52 4E-57 417.1 37.9 368 25-413 57-431 (438)
8 KOG0729 26S proteasome regulat 100.0 4.5E-53 9.7E-58 380.7 27.0 366 25-408 44-420 (435)
9 PRK03992 proteasome-activating 100.0 1.8E-51 3.8E-56 409.6 40.3 372 21-413 3-379 (389)
10 TIGR01242 26Sp45 26S proteasom 100.0 1.3E-48 2.9E-53 387.2 38.7 356 30-406 3-363 (364)
11 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-50 3.6E-55 403.9 23.2 253 156-411 425-679 (693)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-47 2.4E-52 378.6 24.8 257 150-409 496-772 (802)
13 KOG0651 26S proteasome regulat 100.0 1.2E-46 2.6E-51 345.8 16.5 350 40-411 24-378 (388)
14 KOG0736 Peroxisome assembly fa 100.0 2E-45 4.3E-50 370.8 23.7 260 156-417 663-944 (953)
15 KOG0734 AAA+-type ATPase conta 100.0 1.7E-45 3.8E-50 358.0 21.2 245 160-408 299-543 (752)
16 TIGR03689 pup_AAA proteasome A 100.0 3.4E-42 7.4E-47 347.7 35.2 376 28-408 3-480 (512)
17 KOG0738 AAA+-type ATPase [Post 100.0 5.8E-44 1.3E-48 336.6 19.8 253 154-411 201-474 (491)
18 COG1223 Predicted ATPase (AAA+ 100.0 4.1E-43 8.9E-48 315.2 19.7 302 94-411 52-360 (368)
19 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-43 6.7E-48 347.2 20.7 224 161-389 186-414 (802)
20 KOG0731 AAA+-type ATPase conta 100.0 1.9E-42 4.2E-47 355.9 24.7 248 160-408 306-555 (774)
21 COG0465 HflB ATP-dependent Zn 100.0 3.7E-41 8E-46 341.2 22.0 249 159-408 144-392 (596)
22 KOG0739 AAA+-type ATPase [Post 100.0 1.9E-40 4E-45 303.2 14.8 234 150-389 118-353 (439)
23 TIGR01243 CDC48 AAA family ATP 100.0 9.9E-39 2.1E-43 342.5 26.2 252 158-411 446-715 (733)
24 TIGR01241 FtsH_fam ATP-depende 100.0 3.1E-38 6.8E-43 324.7 26.4 250 158-408 48-297 (495)
25 COG0464 SpoVK ATPases of the A 100.0 1.4E-38 3.1E-43 327.9 23.8 249 158-409 235-486 (494)
26 KOG0735 AAA+-type ATPase [Post 100.0 8.8E-38 1.9E-42 312.9 24.4 227 160-389 662-888 (952)
27 KOG0737 AAA+-type ATPase [Post 100.0 5.6E-38 1.2E-42 296.2 20.9 243 161-408 88-361 (386)
28 CHL00176 ftsH cell division pr 100.0 3.4E-37 7.4E-42 321.0 25.0 248 160-408 178-425 (638)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 4.1E-37 8.9E-42 311.3 24.8 242 160-409 223-466 (489)
30 PRK10733 hflB ATP-dependent me 100.0 1.2E-34 2.5E-39 305.1 26.3 247 161-408 148-394 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.1E-34 1.1E-38 311.9 22.9 213 188-409 1619-1880(2281)
32 KOG0730 AAA+-type ATPase [Post 100.0 1E-33 2.2E-38 283.7 21.1 241 160-411 180-421 (693)
33 KOG0732 AAA+-type ATPase conta 100.0 5.2E-34 1.1E-38 300.7 18.1 249 160-411 260-530 (1080)
34 TIGR01243 CDC48 AAA family ATP 100.0 2.7E-32 5.8E-37 292.9 24.7 249 159-410 172-439 (733)
35 KOG0741 AAA+-type ATPase [Post 100.0 5.8E-33 1.2E-37 270.6 13.1 252 160-412 214-496 (744)
36 KOG0740 AAA+-type ATPase [Post 100.0 2E-32 4.4E-37 267.4 16.6 253 152-410 140-408 (428)
37 PLN00020 ribulose bisphosphate 100.0 6.9E-30 1.5E-34 243.9 19.8 204 160-369 110-330 (413)
38 COG0542 clpA ATP-binding subun 99.9 4.3E-24 9.2E-29 222.3 10.1 189 140-351 466-707 (786)
39 CHL00181 cbbX CbbX; Provisiona 99.9 2.8E-22 6.1E-27 191.6 21.5 214 163-389 21-257 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 7.7E-22 1.7E-26 188.7 20.2 212 165-389 22-256 (284)
41 KOG0743 AAA+-type ATPase [Post 99.9 7.3E-22 1.6E-26 192.1 17.7 209 161-379 197-413 (457)
42 KOG0744 AAA+-type ATPase [Post 99.9 4.7E-22 1E-26 184.6 13.2 241 163-411 140-419 (423)
43 TIGR02881 spore_V_K stage V sp 99.9 6.4E-21 1.4E-25 180.7 21.1 212 164-389 5-241 (261)
44 PF05496 RuvB_N: Holliday junc 99.9 2.9E-21 6.2E-26 173.9 16.9 195 159-383 18-226 (233)
45 PF00004 AAA: ATPase family as 99.9 3.5E-21 7.6E-26 162.7 14.3 130 202-335 1-132 (132)
46 KOG0742 AAA+-type ATPase [Post 99.9 4.2E-21 9E-26 183.0 15.0 232 159-402 349-608 (630)
47 KOG0736 Peroxisome assembly fa 99.8 2.9E-20 6.2E-25 189.2 18.7 210 200-414 432-661 (953)
48 PRK10865 protein disaggregatio 99.8 9.3E-21 2E-25 205.4 15.8 194 137-351 540-781 (857)
49 PRK00080 ruvB Holliday junctio 99.8 1.4E-19 3.1E-24 177.1 22.2 219 159-407 19-251 (328)
50 TIGR00635 ruvB Holliday juncti 99.8 1.4E-19 3.1E-24 175.4 21.8 214 163-406 2-229 (305)
51 TIGR00763 lon ATP-dependent pr 99.8 7.5E-21 1.6E-25 205.1 14.1 223 164-404 319-584 (775)
52 COG2255 RuvB Holliday junction 99.8 9.1E-20 2E-24 167.2 18.6 220 159-408 20-253 (332)
53 KOG0735 AAA+-type ATPase [Post 99.8 1.2E-19 2.7E-24 183.1 21.3 235 165-411 408-653 (952)
54 COG0466 Lon ATP-dependent Lon 99.8 8.3E-20 1.8E-24 185.6 17.4 224 163-404 321-582 (782)
55 TIGR02902 spore_lonB ATP-depen 99.8 1.2E-19 2.7E-24 187.4 17.0 220 158-406 58-332 (531)
56 KOG2004 Mitochondrial ATP-depe 99.8 2.8E-20 6E-25 188.1 11.0 170 162-349 408-596 (906)
57 TIGR03346 chaperone_ClpB ATP-d 99.8 6.2E-20 1.3E-24 199.7 13.3 228 140-388 540-827 (852)
58 TIGR03345 VI_ClpV1 type VI sec 99.8 1.1E-18 2.3E-23 188.9 21.8 226 139-386 540-830 (852)
59 COG2256 MGS1 ATPase related to 99.8 5.5E-19 1.2E-23 169.4 17.2 208 159-411 18-243 (436)
60 PRK11034 clpA ATP-dependent Cl 99.8 3.1E-19 6.7E-24 189.8 15.7 190 140-350 433-667 (758)
61 TIGR02639 ClpA ATP-dependent C 99.8 1.6E-18 3.4E-23 186.2 20.0 223 160-407 177-430 (731)
62 PRK14956 DNA polymerase III su 99.8 5.5E-18 1.2E-22 169.7 20.1 203 159-403 12-243 (484)
63 KOG1051 Chaperone HSP104 and r 99.8 1.9E-18 4.1E-23 182.5 16.4 286 28-349 421-784 (898)
64 PRK11034 clpA ATP-dependent Cl 99.8 7.4E-18 1.6E-22 179.3 19.7 221 161-406 182-433 (758)
65 TIGR02639 ClpA ATP-dependent C 99.8 3E-18 6.6E-23 184.0 16.6 206 160-386 449-711 (731)
66 TIGR02928 orc1/cdc6 family rep 99.8 3.2E-17 7E-22 162.9 22.3 222 164-408 14-276 (365)
67 PRK07003 DNA polymerase III su 99.8 1.2E-17 2.6E-22 173.3 19.6 201 159-401 10-239 (830)
68 PRK14962 DNA polymerase III su 99.8 2E-17 4.4E-22 167.9 20.9 205 159-405 8-241 (472)
69 PRK14960 DNA polymerase III su 99.8 2E-17 4.4E-22 169.9 20.0 203 159-403 9-240 (702)
70 COG0464 SpoVK ATPases of the A 99.8 3.3E-17 7.2E-22 169.2 21.4 222 183-409 2-229 (494)
71 CHL00095 clpC Clp protease ATP 99.8 1.6E-17 3.4E-22 180.5 19.8 225 140-385 484-780 (821)
72 PRK14958 DNA polymerase III su 99.8 1.6E-17 3.4E-22 170.4 18.7 204 159-404 10-242 (509)
73 PRK12323 DNA polymerase III su 99.8 1.3E-17 2.9E-22 170.9 17.0 201 159-401 10-244 (700)
74 PRK07994 DNA polymerase III su 99.8 4.5E-17 9.9E-22 169.4 20.8 203 159-403 10-241 (647)
75 PRK00411 cdc6 cell division co 99.8 9.2E-17 2E-21 161.3 22.0 224 163-408 28-284 (394)
76 PRK10787 DNA-binding ATP-depen 99.8 4.1E-18 8.9E-23 182.5 12.2 221 165-404 322-580 (784)
77 PRK14961 DNA polymerase III su 99.7 8.2E-17 1.8E-21 159.6 20.3 210 159-404 10-242 (363)
78 PRK04195 replication factor C 99.7 7.7E-17 1.7E-21 165.6 20.7 208 157-402 6-221 (482)
79 PRK06645 DNA polymerase III su 99.7 9E-17 2E-21 163.8 20.1 214 158-404 14-254 (507)
80 PRK14949 DNA polymerase III su 99.7 1.1E-16 2.3E-21 169.2 20.3 193 159-383 10-225 (944)
81 PRK13342 recombination factor 99.7 1.2E-16 2.6E-21 161.2 19.7 201 159-406 6-219 (413)
82 TIGR03345 VI_ClpV1 type VI sec 99.7 2.3E-16 4.9E-21 170.9 21.4 222 160-407 182-432 (852)
83 PRK08691 DNA polymerase III su 99.7 1.6E-16 3.5E-21 164.7 19.3 212 159-406 10-244 (709)
84 PRK14964 DNA polymerase III su 99.7 3.2E-16 6.9E-21 158.7 20.7 202 160-403 8-238 (491)
85 PRK05342 clpX ATP-dependent pr 99.7 1.9E-16 4.2E-21 158.0 18.6 233 166-400 72-399 (412)
86 PTZ00112 origin recognition co 99.7 3.9E-16 8.4E-21 162.8 20.7 220 165-410 755-1010(1164)
87 PRK12402 replication factor C 99.7 7.3E-16 1.6E-20 151.4 21.6 210 158-405 8-248 (337)
88 PRK14951 DNA polymerase III su 99.7 3E-16 6.5E-21 163.0 19.7 203 159-403 10-246 (618)
89 PRK06893 DNA replication initi 99.7 4E-16 8.7E-21 144.9 18.4 212 158-404 9-228 (229)
90 PLN03025 replication factor C 99.7 6.2E-16 1.3E-20 150.9 20.3 200 158-401 6-218 (319)
91 PRK14957 DNA polymerase III su 99.7 6.5E-16 1.4E-20 158.5 20.7 203 160-404 11-242 (546)
92 TIGR00362 DnaA chromosomal rep 99.7 6.9E-16 1.5E-20 155.5 19.7 191 199-407 136-338 (405)
93 PRK14952 DNA polymerase III su 99.7 7.6E-16 1.7E-20 159.4 20.4 203 159-402 7-240 (584)
94 COG2204 AtoC Response regulato 99.7 4.3E-17 9.2E-22 162.3 10.7 270 100-400 73-385 (464)
95 PRK05563 DNA polymerase III su 99.7 1.2E-15 2.7E-20 158.4 21.9 203 159-403 10-241 (559)
96 PRK14969 DNA polymerase III su 99.7 4.2E-16 9.1E-21 160.8 18.1 209 160-404 11-242 (527)
97 PRK14963 DNA polymerase III su 99.7 9.8E-16 2.1E-20 156.9 20.4 203 159-404 8-238 (504)
98 PRK00149 dnaA chromosomal repl 99.7 6.2E-16 1.3E-20 157.7 18.8 191 199-407 148-350 (450)
99 COG1474 CDC6 Cdc6-related prot 99.7 3.3E-15 7.1E-20 147.1 22.3 218 166-408 18-267 (366)
100 PHA02544 44 clamp loader, smal 99.7 1.2E-15 2.6E-20 148.7 19.1 162 155-349 11-173 (316)
101 PRK05896 DNA polymerase III su 99.7 1.3E-15 2.7E-20 156.7 19.6 202 159-402 10-240 (605)
102 PRK07940 DNA polymerase III su 99.7 6.3E-16 1.4E-20 153.6 16.8 188 163-376 3-212 (394)
103 PRK07764 DNA polymerase III su 99.7 1.4E-15 3E-20 163.1 20.4 207 159-400 9-240 (824)
104 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.3E-15 5E-20 139.4 19.0 203 161-403 11-225 (226)
105 PRK14959 DNA polymerase III su 99.7 1.7E-15 3.8E-20 156.4 19.9 203 159-403 10-241 (624)
106 PRK08084 DNA replication initi 99.7 4.3E-15 9.4E-20 138.5 20.7 207 159-404 16-234 (235)
107 PRK08903 DnaA regulatory inact 99.7 4.3E-15 9.4E-20 137.9 20.6 202 159-404 12-224 (227)
108 TIGR00382 clpX endopeptidase C 99.7 1.2E-15 2.7E-20 151.5 17.5 223 165-389 77-387 (413)
109 TIGR02640 gas_vesic_GvpN gas v 99.7 1.5E-15 3.3E-20 143.9 17.4 189 198-409 20-260 (262)
110 TIGR02397 dnaX_nterm DNA polym 99.7 3.2E-15 7E-20 148.0 20.4 203 159-403 8-239 (355)
111 PRK13341 recombination factor 99.7 1E-15 2.3E-20 162.2 17.9 206 159-406 22-247 (725)
112 PRK07133 DNA polymerase III su 99.7 2.4E-15 5.2E-20 157.5 20.3 208 159-402 12-239 (725)
113 TIGR00390 hslU ATP-dependent p 99.7 1.4E-15 3.1E-20 149.1 17.4 245 165-411 12-435 (441)
114 CHL00081 chlI Mg-protoporyphyr 99.7 1.2E-15 2.7E-20 148.3 16.8 226 159-411 11-327 (350)
115 PRK10865 protein disaggregatio 99.7 8.1E-16 1.8E-20 167.1 17.1 169 160-354 173-359 (857)
116 PRK13407 bchI magnesium chelat 99.7 1.2E-15 2.5E-20 148.2 16.0 220 160-409 3-309 (334)
117 CHL00095 clpC Clp protease ATP 99.7 2.6E-15 5.7E-20 163.2 20.4 201 161-387 175-402 (821)
118 PRK14953 DNA polymerase III su 99.7 3.7E-15 8.1E-20 152.1 20.2 209 159-403 10-241 (486)
119 PRK14965 DNA polymerase III su 99.7 2E-15 4.2E-20 157.6 18.4 202 159-402 10-240 (576)
120 KOG0989 Replication factor C, 99.7 8.7E-16 1.9E-20 142.6 13.8 190 159-384 30-236 (346)
121 PRK14088 dnaA chromosomal repl 99.7 2.8E-15 6.1E-20 151.8 18.8 192 199-407 130-333 (440)
122 TIGR03346 chaperone_ClpB ATP-d 99.7 6.1E-15 1.3E-19 160.8 22.5 202 160-387 168-397 (852)
123 PRK08451 DNA polymerase III su 99.7 5.3E-15 1.1E-19 151.2 20.5 202 159-402 8-238 (535)
124 PRK06647 DNA polymerase III su 99.7 4.8E-15 1E-19 153.6 19.6 209 159-403 10-241 (563)
125 KOG2028 ATPase related to the 99.7 1.6E-15 3.4E-20 143.5 14.4 212 159-408 132-370 (554)
126 PRK05201 hslU ATP-dependent pr 99.7 2.5E-15 5.3E-20 147.6 15.9 244 165-410 15-436 (443)
127 TIGR02903 spore_lon_C ATP-depe 99.7 1.5E-14 3.2E-19 152.0 22.8 218 160-406 149-430 (615)
128 PRK09111 DNA polymerase III su 99.6 1.1E-14 2.4E-19 151.6 20.8 210 159-404 18-255 (598)
129 PRK14970 DNA polymerase III su 99.6 9.4E-15 2E-19 145.4 19.5 210 159-404 11-231 (367)
130 PRK08727 hypothetical protein; 99.6 2.2E-14 4.7E-19 133.6 20.7 179 200-405 42-230 (233)
131 PRK06305 DNA polymerase III su 99.6 1.4E-14 3E-19 147.0 21.0 202 160-403 12-243 (451)
132 PRK00440 rfc replication facto 99.6 1.3E-14 2.7E-19 141.5 19.9 205 156-404 8-224 (319)
133 PRK14955 DNA polymerase III su 99.6 5.5E-15 1.2E-19 148.2 17.2 213 159-403 10-254 (397)
134 PRK05642 DNA replication initi 99.6 2.9E-14 6.3E-19 132.8 20.6 180 199-404 45-233 (234)
135 PRK14086 dnaA chromosomal repl 99.6 1.9E-14 4.1E-19 148.1 20.8 191 200-408 315-517 (617)
136 TIGR02030 BchI-ChlI magnesium 99.6 1.3E-14 2.9E-19 141.2 17.5 220 163-411 2-314 (337)
137 COG3829 RocR Transcriptional r 99.6 1.8E-15 3.9E-20 150.7 11.6 211 160-400 240-491 (560)
138 COG1224 TIP49 DNA helicase TIP 99.6 4.2E-14 9.2E-19 133.6 19.6 132 259-410 292-436 (450)
139 PRK12422 chromosomal replicati 99.6 3.3E-14 7.1E-19 143.8 19.7 193 200-408 142-345 (445)
140 PRK14954 DNA polymerase III su 99.6 5.5E-14 1.2E-18 146.6 21.0 213 159-403 10-254 (620)
141 PF05673 DUF815: Protein of un 99.6 5.6E-14 1.2E-18 128.5 17.7 195 157-380 19-243 (249)
142 PRK14948 DNA polymerase III su 99.6 7.8E-14 1.7E-18 146.2 20.9 191 160-382 11-226 (620)
143 COG2812 DnaX DNA polymerase II 99.6 1.3E-14 2.8E-19 146.6 14.2 209 159-403 10-241 (515)
144 TIGR02442 Cob-chelat-sub cobal 99.6 3.1E-14 6.7E-19 150.5 16.9 218 163-410 2-308 (633)
145 PRK14950 DNA polymerase III su 99.6 7.6E-14 1.6E-18 146.4 19.6 210 158-403 9-242 (585)
146 PRK14087 dnaA chromosomal repl 99.6 5.8E-14 1.3E-18 142.4 17.8 192 199-408 141-350 (450)
147 COG3604 FhlA Transcriptional r 99.6 9.9E-15 2.1E-19 143.6 10.8 201 161-386 219-456 (550)
148 PRK14971 DNA polymerase III su 99.6 2.2E-13 4.8E-18 142.8 20.7 201 160-402 12-242 (614)
149 PRK06620 hypothetical protein; 99.6 2.1E-13 4.6E-18 125.1 18.2 164 200-403 45-213 (214)
150 TIGR00764 lon_rel lon-related 99.6 2.8E-13 6.2E-18 141.9 20.3 136 260-408 219-393 (608)
151 TIGR00368 Mg chelatase-related 99.6 1.4E-13 3E-18 140.7 17.5 212 162-404 189-497 (499)
152 PF00308 Bac_DnaA: Bacterial d 99.5 1.5E-13 3.2E-18 126.7 15.7 169 201-386 36-216 (219)
153 COG0593 DnaA ATPase involved i 99.5 4.5E-13 9.7E-18 131.9 20.0 195 198-410 112-317 (408)
154 PRK13531 regulatory ATPase Rav 99.5 6.6E-13 1.4E-17 133.0 20.5 216 165-409 20-286 (498)
155 TIGR01650 PD_CobS cobaltochela 99.5 3.1E-14 6.6E-19 136.6 10.5 140 198-351 63-235 (327)
156 cd00009 AAA The AAA+ (ATPases 99.5 3E-13 6.6E-18 115.1 14.5 141 169-335 2-151 (151)
157 COG1221 PspF Transcriptional r 99.5 6E-14 1.3E-18 137.6 10.3 202 160-387 73-310 (403)
158 TIGR02329 propionate_PrpR prop 99.5 8.2E-14 1.8E-18 143.3 11.5 212 162-401 209-465 (526)
159 PF07724 AAA_2: AAA domain (Cd 99.5 5.3E-14 1.2E-18 124.4 8.6 115 198-314 2-130 (171)
160 PRK15424 propionate catabolism 99.5 1.7E-13 3.6E-18 141.0 12.8 210 162-399 216-478 (538)
161 PRK11608 pspF phage shock prot 99.5 3.2E-13 6.9E-18 131.9 13.6 196 164-386 5-240 (326)
162 PHA02244 ATPase-like protein 99.5 1.6E-12 3.5E-17 126.1 18.0 125 198-338 118-263 (383)
163 COG0714 MoxR-like ATPases [Gen 99.5 2.1E-12 4.6E-17 126.5 18.7 149 166-346 25-200 (329)
164 TIGR02974 phageshock_pspF psp 99.5 6.6E-13 1.4E-17 129.7 15.0 192 167-386 1-233 (329)
165 TIGR01817 nifA Nif-specific re 99.5 2.7E-13 5.8E-18 141.4 13.0 210 161-400 192-439 (534)
166 PRK09112 DNA polymerase III su 99.5 2.1E-12 4.6E-17 126.8 18.5 188 159-379 17-241 (351)
167 PF01078 Mg_chelatase: Magnesi 99.5 4.7E-14 1E-18 126.5 5.8 146 163-339 1-205 (206)
168 PRK09087 hypothetical protein; 99.5 2.4E-12 5.1E-17 119.2 17.1 172 200-406 45-222 (226)
169 COG0542 clpA ATP-binding subun 99.5 3E-12 6.5E-17 134.4 19.6 221 160-405 165-412 (786)
170 PRK10820 DNA-binding transcrip 99.5 1.1E-12 2.4E-17 135.8 16.0 210 159-399 198-447 (520)
171 TIGR03015 pepcterm_ATPase puta 99.5 3.9E-12 8.5E-17 121.0 18.2 193 199-407 43-267 (269)
172 PRK07471 DNA polymerase III su 99.5 3.1E-12 6.6E-17 126.3 17.8 179 160-372 14-233 (365)
173 PF00158 Sigma54_activat: Sigm 99.4 2.3E-13 4.9E-18 120.0 8.3 123 167-314 1-144 (168)
174 smart00350 MCM minichromosome 99.4 2.4E-12 5.1E-17 133.1 17.2 229 164-409 202-507 (509)
175 PRK11388 DNA-binding transcrip 99.4 1.8E-12 4E-17 138.0 16.6 212 161-403 321-568 (638)
176 PRK05022 anaerobic nitric oxid 99.4 1.7E-12 3.7E-17 134.3 15.8 197 163-387 185-421 (509)
177 TIGR02031 BchD-ChlD magnesium 99.4 2E-12 4.4E-17 135.3 15.6 199 199-411 16-263 (589)
178 PRK05564 DNA polymerase III su 99.4 4.5E-12 9.8E-17 123.4 16.6 170 163-370 2-183 (313)
179 PRK09862 putative ATP-dependen 99.4 4.9E-12 1.1E-16 128.9 16.9 213 162-405 188-491 (506)
180 PRK07399 DNA polymerase III su 99.4 4.8E-12 1E-16 122.6 15.2 183 163-380 2-223 (314)
181 COG2607 Predicted ATPase (AAA+ 99.4 7E-11 1.5E-15 106.6 19.3 193 159-380 54-275 (287)
182 PF06068 TIP49: TIP49 C-termin 99.4 8.6E-12 1.9E-16 119.9 14.4 102 259-380 279-393 (398)
183 PRK15429 formate hydrogenlyase 99.4 9E-12 2E-16 133.6 16.2 197 162-386 373-609 (686)
184 KOG1942 DNA helicase, TBP-inte 99.4 4.6E-11 9.9E-16 110.5 17.8 132 259-410 297-442 (456)
185 PF07728 AAA_5: AAA domain (dy 99.4 7.8E-13 1.7E-17 113.1 5.8 112 201-327 1-139 (139)
186 COG1239 ChlI Mg-chelatase subu 99.4 2.3E-11 4.9E-16 118.6 16.2 224 161-411 13-327 (423)
187 PF05621 TniB: Bacterial TniB 99.4 7.8E-11 1.7E-15 111.3 19.1 216 166-401 35-284 (302)
188 PRK13765 ATP-dependent proteas 99.3 1.1E-11 2.4E-16 129.7 14.1 133 260-405 228-399 (637)
189 TIGR00678 holB DNA polymerase 99.3 2.3E-11 5E-16 109.5 14.4 143 198-369 13-183 (188)
190 COG0606 Predicted ATPase with 99.3 2.3E-12 5E-17 127.1 7.8 213 162-405 176-484 (490)
191 COG1219 ClpX ATP-dependent pro 99.3 1.4E-11 3.1E-16 115.1 12.3 125 165-295 61-202 (408)
192 PRK11331 5-methylcytosine-spec 99.3 2.9E-11 6.2E-16 120.4 15.0 147 164-338 174-361 (459)
193 PRK04132 replication factor C 99.3 6.9E-11 1.5E-15 126.5 19.0 160 198-383 563-736 (846)
194 COG1220 HslU ATP-dependent pro 99.3 1.7E-11 3.7E-16 115.4 12.3 85 260-346 252-346 (444)
195 KOG2680 DNA helicase TIP49, TB 99.3 6.7E-11 1.4E-15 109.7 15.9 132 259-410 289-433 (454)
196 PRK08058 DNA polymerase III su 99.3 2.7E-11 5.9E-16 118.5 13.0 154 163-347 3-180 (329)
197 COG0470 HolB ATPase involved i 99.3 5.1E-11 1.1E-15 116.3 14.5 146 166-343 2-175 (325)
198 PRK05707 DNA polymerase III su 99.3 7.7E-11 1.7E-15 114.8 15.6 153 197-371 20-197 (328)
199 KOG1514 Origin recognition com 99.3 1.7E-10 3.6E-15 118.0 17.4 219 167-408 398-657 (767)
200 KOG0745 Putative ATP-dependent 99.3 1.6E-10 3.5E-15 112.0 16.4 187 201-389 228-511 (564)
201 PTZ00111 DNA replication licen 99.3 1.8E-10 3.9E-15 122.9 18.1 229 164-409 449-807 (915)
202 TIGR02915 PEP_resp_reg putativ 99.3 4.3E-11 9.4E-16 122.2 13.0 269 103-399 73-382 (445)
203 smart00382 AAA ATPases associa 99.3 5.4E-11 1.2E-15 100.2 11.5 126 199-336 2-147 (148)
204 KOG1969 DNA replication checkp 99.3 2.7E-10 5.9E-15 116.8 18.3 218 154-390 260-519 (877)
205 TIGR00602 rad24 checkpoint pro 99.2 1.8E-10 3.9E-15 120.4 16.2 222 155-403 74-352 (637)
206 PRK10923 glnG nitrogen regulat 99.2 1.2E-10 2.6E-15 119.8 14.0 211 163-403 136-385 (469)
207 KOG0991 Replication factor C, 99.2 1.7E-10 3.6E-15 103.6 12.1 179 156-369 18-206 (333)
208 PF07726 AAA_3: ATPase family 99.2 4.3E-12 9.3E-17 104.8 1.6 115 201-328 1-130 (131)
209 COG3283 TyrR Transcriptional r 99.2 1.9E-10 4.2E-15 109.1 12.6 200 159-386 198-432 (511)
210 PF13177 DNA_pol3_delta2: DNA 99.2 1.5E-10 3.2E-15 101.7 10.8 134 169-336 1-161 (162)
211 KOG2227 Pre-initiation complex 99.2 8.1E-10 1.8E-14 108.4 16.4 223 164-408 149-417 (529)
212 smart00763 AAA_PrkA PrkA AAA d 99.2 5.9E-10 1.3E-14 108.3 15.2 167 163-351 48-329 (361)
213 PRK06871 DNA polymerase III su 99.2 1.5E-09 3.3E-14 105.2 17.0 133 197-348 22-178 (325)
214 TIGR01818 ntrC nitrogen regula 99.1 2.7E-10 5.9E-15 116.9 11.8 213 164-403 133-381 (463)
215 PRK11361 acetoacetate metaboli 99.1 8.1E-10 1.8E-14 113.2 15.0 210 163-403 141-390 (457)
216 PRK07993 DNA polymerase III su 99.1 1.9E-09 4.1E-14 105.4 15.4 132 197-347 22-178 (334)
217 PRK15115 response regulator Gl 99.1 1.2E-09 2.6E-14 111.6 14.5 207 165-402 134-380 (444)
218 PF14532 Sigma54_activ_2: Sigm 99.1 1.4E-10 3E-15 99.1 6.1 126 168-335 1-137 (138)
219 PRK08116 hypothetical protein; 99.1 5.1E-10 1.1E-14 106.3 10.6 123 199-338 114-251 (268)
220 PRK08769 DNA polymerase III su 99.1 3.6E-09 7.8E-14 102.4 16.3 152 197-372 24-203 (319)
221 PRK08181 transposase; Validate 99.1 1.1E-09 2.4E-14 103.6 11.3 126 198-341 105-247 (269)
222 PRK06964 DNA polymerase III su 99.1 1.7E-09 3.6E-14 105.6 12.7 133 197-348 19-203 (342)
223 PRK06090 DNA polymerase III su 99.0 8.6E-09 1.9E-13 99.7 17.2 132 197-347 23-178 (319)
224 KOG2035 Replication factor C, 99.0 1.7E-08 3.8E-13 93.0 17.1 183 159-373 7-224 (351)
225 PRK13406 bchD magnesium chelat 99.0 4.6E-09 1E-13 109.4 15.1 195 200-411 26-255 (584)
226 PRK12377 putative replication 99.0 2.3E-09 5E-14 100.2 11.6 101 199-314 101-206 (248)
227 KOG0741 AAA+-type ATPase [Post 99.0 7.1E-09 1.5E-13 103.0 13.1 142 198-346 537-683 (744)
228 PRK06835 DNA replication prote 98.9 8.4E-09 1.8E-13 100.4 12.5 123 199-338 183-319 (329)
229 PRK06526 transposase; Provisio 98.9 2.9E-09 6.2E-14 100.2 8.3 101 198-314 97-201 (254)
230 PRK08699 DNA polymerase III su 98.9 9.2E-09 2E-13 100.2 11.5 131 197-347 19-183 (325)
231 PRK10365 transcriptional regul 98.9 2.2E-08 4.8E-13 102.1 14.7 209 166-402 140-385 (441)
232 PRK07952 DNA replication prote 98.9 9E-09 1.9E-13 96.0 10.6 109 200-323 100-219 (244)
233 KOG0990 Replication factor C, 98.9 1.1E-08 2.3E-13 96.3 10.9 160 156-350 32-204 (360)
234 PF01695 IstB_IS21: IstB-like 98.9 2.5E-09 5.3E-14 95.4 5.8 101 198-314 46-150 (178)
235 PF03215 Rad17: Rad17 cell cyc 98.9 6.1E-08 1.3E-12 99.7 16.5 209 155-387 9-269 (519)
236 COG1241 MCM2 Predicted ATPase 98.9 1.7E-08 3.8E-13 105.4 12.1 227 164-409 285-595 (682)
237 PF00493 MCM: MCM2/3/5 family 98.9 2.5E-09 5.4E-14 104.7 5.5 229 164-409 23-329 (331)
238 COG3284 AcoR Transcriptional a 98.9 7.8E-09 1.7E-13 105.4 9.0 185 199-403 336-554 (606)
239 COG1484 DnaC DNA replication p 98.8 2.8E-08 6.2E-13 93.5 12.0 101 198-314 104-209 (254)
240 PRK09183 transposase/IS protei 98.8 1.3E-08 2.9E-13 96.1 9.7 102 198-314 101-206 (259)
241 PF13173 AAA_14: AAA domain 98.8 2.7E-08 5.8E-13 83.8 10.5 118 200-340 3-126 (128)
242 PRK08939 primosomal protein Dn 98.8 1.7E-08 3.6E-13 97.6 10.3 102 198-314 155-261 (306)
243 KOG0478 DNA replication licens 98.8 7.3E-08 1.6E-12 98.5 14.7 228 166-409 430-727 (804)
244 KOG0480 DNA replication licens 98.8 3.9E-08 8.5E-13 99.7 12.2 232 163-409 343-646 (764)
245 PRK06921 hypothetical protein; 98.8 3.4E-08 7.3E-13 93.7 11.0 104 198-313 116-224 (266)
246 PF12774 AAA_6: Hydrolytic ATP 98.8 1.5E-07 3.2E-12 87.2 14.1 125 200-345 33-176 (231)
247 PF01637 Arch_ATPase: Archaeal 98.8 2E-08 4.4E-13 92.6 8.5 182 168-376 2-232 (234)
248 COG3267 ExeA Type II secretory 98.8 5.2E-07 1.1E-11 82.8 16.5 186 201-400 53-267 (269)
249 PRK05917 DNA polymerase III su 98.7 2.1E-07 4.6E-12 88.5 12.7 122 197-337 17-155 (290)
250 KOG0482 DNA replication licens 98.7 1.2E-07 2.7E-12 93.8 10.4 228 165-412 342-644 (721)
251 PF13401 AAA_22: AAA domain; P 98.6 1.2E-07 2.5E-12 79.8 8.3 72 199-270 4-99 (131)
252 KOG2170 ATPase of the AAA+ sup 98.6 3.4E-07 7.3E-12 85.7 11.7 130 165-314 82-225 (344)
253 PRK05818 DNA polymerase III su 98.6 1.8E-06 3.9E-11 80.5 15.4 121 197-336 5-147 (261)
254 PF12775 AAA_7: P-loop contain 98.6 1.2E-07 2.6E-12 90.2 7.0 139 198-350 32-194 (272)
255 PRK07276 DNA polymerase III su 98.6 2.8E-06 6.1E-11 81.1 16.1 144 169-346 6-172 (290)
256 PF05729 NACHT: NACHT domain 98.6 1.2E-06 2.6E-11 76.4 12.6 140 201-351 2-165 (166)
257 COG5271 MDN1 AAA ATPase contai 98.5 1.2E-06 2.7E-11 96.5 13.7 135 199-349 888-1047(4600)
258 COG4650 RtcR Sigma54-dependent 98.5 1.4E-06 3.1E-11 81.2 11.2 134 196-343 205-366 (531)
259 PF03969 AFG1_ATPase: AFG1-lik 98.5 5.9E-07 1.3E-11 88.7 9.1 102 196-314 59-168 (362)
260 PRK07132 DNA polymerase III su 98.5 6.5E-06 1.4E-10 79.2 15.9 126 198-347 17-160 (299)
261 KOG1970 Checkpoint RAD17-RFC c 98.4 6.1E-06 1.3E-10 83.1 15.6 212 156-386 73-320 (634)
262 cd01120 RecA-like_NTPases RecA 98.4 1.4E-06 3E-11 75.5 9.5 110 202-315 2-138 (165)
263 KOG0477 DNA replication licens 98.4 1.2E-06 2.5E-11 89.0 8.7 233 166-410 450-761 (854)
264 PLN03210 Resistant to P. syrin 98.4 7.8E-06 1.7E-10 93.0 16.4 179 159-372 178-390 (1153)
265 KOG2228 Origin recognition com 98.3 6.3E-06 1.4E-10 78.4 11.5 163 164-349 23-219 (408)
266 TIGR02237 recomb_radB DNA repa 98.3 1.8E-06 3.9E-11 78.9 7.8 78 195-272 8-111 (209)
267 COG5271 MDN1 AAA ATPase contai 98.3 3.4E-06 7.5E-11 93.2 10.7 137 198-350 1542-1704(4600)
268 PF06309 Torsin: Torsin; Inte 98.3 4.1E-06 9E-11 69.3 8.2 51 165-223 25-77 (127)
269 KOG0481 DNA replication licens 98.2 1.1E-05 2.4E-10 80.4 12.1 228 166-410 332-643 (729)
270 PF00910 RNA_helicase: RNA hel 98.2 1.6E-06 3.5E-11 70.5 5.3 23 202-224 1-23 (107)
271 COG1618 Predicted nucleotide k 98.2 1.7E-05 3.7E-10 68.0 11.0 25 199-223 5-29 (179)
272 PF00931 NB-ARC: NB-ARC domain 98.2 1.4E-05 3.1E-10 76.5 11.9 173 171-378 2-202 (287)
273 cd01124 KaiC KaiC is a circadi 98.2 1.3E-05 2.7E-10 71.7 10.8 102 202-314 2-140 (187)
274 PF14516 AAA_35: AAA-like doma 98.2 0.00022 4.8E-09 70.0 20.3 171 197-380 29-241 (331)
275 COG1485 Predicted ATPase [Gene 98.2 9.7E-06 2.1E-10 77.9 10.1 101 197-314 63-171 (367)
276 KOG1051 Chaperone HSP104 and r 98.2 2E-05 4.4E-10 84.7 12.9 162 164-351 185-365 (898)
277 TIGR02012 tigrfam_recA protein 98.2 1.2E-05 2.5E-10 77.9 10.0 118 195-312 51-190 (321)
278 cd00983 recA RecA is a bacter 98.1 1.1E-05 2.4E-10 78.2 9.5 118 195-312 51-190 (325)
279 TIGR02688 conserved hypothetic 98.1 2.8E-05 6E-10 77.2 12.3 79 198-295 208-290 (449)
280 cd01121 Sms Sms (bacterial rad 98.1 1.7E-05 3.8E-10 78.7 10.5 79 195-273 78-173 (372)
281 PRK11823 DNA repair protein Ra 98.1 1.7E-05 3.7E-10 80.8 10.8 79 195-273 76-171 (446)
282 TIGR01618 phage_P_loop phage n 98.1 6.2E-06 1.3E-10 75.6 6.8 107 199-309 12-140 (220)
283 KOG2543 Origin recognition com 98.1 4.1E-05 8.9E-10 74.1 12.2 160 165-348 6-192 (438)
284 KOG1968 Replication factor C, 98.1 1.1E-05 2.3E-10 87.4 9.1 163 202-385 360-535 (871)
285 PRK08533 flagellar accessory p 98.1 4.3E-05 9.4E-10 71.0 11.8 110 195-314 20-163 (230)
286 PRK09361 radB DNA repair and r 98.1 1.4E-05 3E-10 74.0 8.4 39 195-233 19-60 (225)
287 PF13207 AAA_17: AAA domain; P 98.0 5E-06 1.1E-10 68.8 3.9 31 202-232 2-32 (121)
288 PRK06067 flagellar accessory p 98.0 2.5E-05 5.3E-10 72.8 8.9 76 195-270 21-132 (234)
289 COG1373 Predicted ATPase (AAA+ 98.0 7.2E-05 1.6E-09 75.2 12.5 124 197-343 36-161 (398)
290 PHA00729 NTP-binding motif con 98.0 8.7E-06 1.9E-10 74.6 5.3 25 200-224 18-42 (226)
291 PRK15455 PrkA family serine pr 98.0 1.5E-05 3.3E-10 81.8 7.1 63 163-232 74-137 (644)
292 PF13191 AAA_16: AAA ATPase do 97.9 8.7E-06 1.9E-10 72.4 4.2 59 167-235 2-63 (185)
293 cd01394 radB RadB. The archaea 97.9 4E-05 8.7E-10 70.5 8.3 39 195-233 15-56 (218)
294 PRK09354 recA recombinase A; P 97.9 6.6E-05 1.4E-09 73.4 9.5 78 195-272 56-152 (349)
295 PF07693 KAP_NTPase: KAP famil 97.9 0.0011 2.3E-08 64.7 18.1 79 258-351 172-265 (325)
296 PRK00131 aroK shikimate kinase 97.9 1.4E-05 3E-10 70.4 4.3 35 197-231 2-36 (175)
297 PRK08118 topology modulation p 97.9 2.9E-05 6.3E-10 68.4 6.2 32 201-232 3-34 (167)
298 PHA02774 E1; Provisional 97.9 6.7E-05 1.5E-09 77.1 9.5 131 195-356 430-588 (613)
299 TIGR03877 thermo_KaiC_1 KaiC d 97.8 0.00017 3.7E-09 67.3 11.5 38 195-232 17-57 (237)
300 cd01128 rho_factor Transcripti 97.8 0.00017 3.6E-09 67.7 11.1 115 198-312 15-165 (249)
301 PRK04296 thymidine kinase; Pro 97.8 0.0002 4.3E-09 64.5 11.2 70 201-270 4-90 (190)
302 COG2804 PulE Type II secretory 97.8 0.00013 2.8E-09 73.6 10.8 113 140-269 212-338 (500)
303 cd01131 PilT Pilus retraction 97.8 0.00012 2.7E-09 66.3 9.7 68 201-268 3-84 (198)
304 COG3854 SpoIIIAA ncharacterize 97.8 0.00015 3.4E-09 65.7 10.0 72 199-270 137-230 (308)
305 PF03266 NTPase_1: NTPase; In 97.8 1.3E-05 2.9E-10 70.6 2.6 23 201-223 1-23 (168)
306 TIGR00416 sms DNA repair prote 97.8 0.00017 3.8E-09 73.6 11.0 78 195-272 90-184 (454)
307 PF13671 AAA_33: AAA domain; P 97.8 7.5E-05 1.6E-09 63.5 7.0 36 202-239 2-37 (143)
308 PF13604 AAA_30: AAA domain; P 97.8 5E-05 1.1E-09 68.8 6.0 34 200-233 19-55 (196)
309 COG4619 ABC-type uncharacteriz 97.8 0.00012 2.6E-09 63.3 7.9 28 196-223 26-53 (223)
310 PRK07261 topology modulation p 97.8 6.2E-05 1.4E-09 66.6 6.5 33 201-233 2-34 (171)
311 PF05707 Zot: Zonular occluden 97.7 7.3E-05 1.6E-09 67.5 7.0 123 202-336 3-146 (193)
312 PRK12723 flagellar biosynthesi 97.7 0.00027 5.9E-09 70.4 11.5 130 199-342 174-328 (388)
313 PF06745 KaiC: KaiC; InterPro 97.7 0.00011 2.4E-09 68.0 8.2 76 195-270 15-127 (226)
314 PHA02624 large T antigen; Prov 97.7 7.7E-05 1.7E-09 77.0 7.7 123 195-335 427-561 (647)
315 PRK04841 transcriptional regul 97.7 0.00089 1.9E-08 74.5 16.6 153 199-372 32-220 (903)
316 cd01393 recA_like RecA is a b 97.7 0.00012 2.7E-09 67.5 8.2 39 195-233 15-62 (226)
317 TIGR02858 spore_III_AA stage I 97.7 0.0001 2.3E-09 69.9 7.7 69 200-268 112-204 (270)
318 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00011 2.3E-09 68.4 7.7 117 195-312 15-168 (235)
319 PF04665 Pox_A32: Poxvirus A32 97.7 0.00071 1.5E-08 62.8 12.9 133 197-348 11-169 (241)
320 cd03216 ABC_Carb_Monos_I This 97.7 0.00028 6E-09 61.9 9.7 106 196-315 23-143 (163)
321 PRK06581 DNA polymerase III su 97.7 0.00052 1.1E-08 63.1 11.5 133 199-352 15-164 (263)
322 PRK09376 rho transcription ter 97.7 0.00028 6.2E-09 69.6 10.3 112 200-311 170-317 (416)
323 PRK10536 hypothetical protein; 97.7 0.00036 7.7E-09 65.2 10.4 45 163-222 53-97 (262)
324 PRK00771 signal recognition pa 97.7 0.00032 6.8E-09 71.0 10.8 71 198-270 94-187 (437)
325 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00039 8.4E-09 65.8 10.8 38 195-232 32-72 (259)
326 cd03283 ABC_MutS-like MutS-lik 97.6 0.00035 7.5E-09 63.5 9.9 26 197-222 23-48 (199)
327 TIGR01420 pilT_fam pilus retra 97.6 8.2E-05 1.8E-09 73.4 6.2 71 198-268 121-205 (343)
328 PF00448 SRP54: SRP54-type pro 97.6 0.00039 8.4E-09 62.9 9.9 101 199-312 1-124 (196)
329 PRK14974 cell division protein 97.6 0.00029 6.4E-09 68.9 9.6 74 198-271 139-235 (336)
330 cd01129 PulE-GspE PulE/GspE Th 97.6 0.0007 1.5E-08 64.3 12.0 93 163-269 58-160 (264)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.0004 8.7E-09 59.6 9.5 101 196-315 23-128 (144)
332 PRK06762 hypothetical protein; 97.6 0.00018 3.8E-09 63.1 7.3 38 200-237 3-40 (166)
333 cd00046 DEXDc DEAD-like helica 97.6 0.00043 9.3E-09 57.5 9.3 23 201-223 2-24 (144)
334 COG1126 GlnQ ABC-type polar am 97.6 0.00051 1.1E-08 62.0 9.9 25 197-221 26-50 (240)
335 COG4178 ABC-type uncharacteriz 97.6 0.00013 2.8E-09 75.7 7.1 52 249-315 524-575 (604)
336 PTZ00202 tuzin; Provisional 97.6 0.0024 5.3E-08 63.8 15.5 60 164-233 261-320 (550)
337 KOG2383 Predicted ATPase [Gene 97.6 0.00024 5.3E-09 69.3 8.4 27 197-223 112-138 (467)
338 KOG0479 DNA replication licens 97.6 0.00093 2E-08 68.0 12.6 153 164-333 300-481 (818)
339 TIGR03880 KaiC_arch_3 KaiC dom 97.6 0.00071 1.5E-08 62.5 11.3 39 195-233 12-53 (224)
340 PRK04328 hypothetical protein; 97.6 0.00076 1.6E-08 63.5 11.5 38 195-232 19-59 (249)
341 PRK09519 recA DNA recombinatio 97.6 0.00032 6.9E-09 75.2 9.8 78 195-272 56-152 (790)
342 PRK03839 putative kinase; Prov 97.6 6.2E-05 1.3E-09 67.1 3.7 31 201-231 2-32 (180)
343 PRK13947 shikimate kinase; Pro 97.6 6.7E-05 1.4E-09 66.1 3.9 31 201-231 3-33 (171)
344 PRK11889 flhF flagellar biosyn 97.6 0.00074 1.6E-08 66.8 11.3 96 171-270 217-332 (436)
345 cd00984 DnaB_C DnaB helicase C 97.5 0.00039 8.4E-09 64.9 9.0 38 195-232 9-50 (242)
346 COG1116 TauB ABC-type nitrate/ 97.5 0.00014 3E-09 67.1 5.7 27 197-223 27-53 (248)
347 PRK00625 shikimate kinase; Pro 97.5 7E-05 1.5E-09 66.4 3.7 31 201-231 2-32 (173)
348 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00081 1.8E-08 61.7 10.7 22 200-221 30-51 (213)
349 cd00464 SK Shikimate kinase (S 97.5 8.3E-05 1.8E-09 64.1 4.0 38 201-240 1-38 (154)
350 cd03243 ABC_MutS_homologs The 97.5 0.00051 1.1E-08 62.5 9.3 24 198-221 28-51 (202)
351 PRK14722 flhF flagellar biosyn 97.5 0.00036 7.8E-09 69.1 8.8 27 197-223 135-161 (374)
352 PRK05800 cobU adenosylcobinami 97.5 0.00045 9.8E-09 61.0 8.6 33 201-233 3-35 (170)
353 PRK12339 2-phosphoglycerate ki 97.5 0.00083 1.8E-08 60.8 10.4 34 200-235 4-37 (197)
354 cd00227 CPT Chloramphenicol (C 97.5 7.7E-05 1.7E-09 66.2 3.6 36 200-235 3-38 (175)
355 PRK12724 flagellar biosynthesi 97.5 0.002 4.3E-08 64.5 13.9 112 198-318 222-350 (432)
356 cd00544 CobU Adenosylcobinamid 97.5 0.0006 1.3E-08 60.2 9.2 94 202-297 2-113 (169)
357 PRK13948 shikimate kinase; Pro 97.5 0.00014 3E-09 64.9 5.2 43 197-241 8-50 (182)
358 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00085 1.9E-08 59.7 10.2 105 197-314 23-132 (177)
359 PRK13695 putative NTPase; Prov 97.5 0.0018 3.9E-08 57.3 12.2 23 201-223 2-24 (174)
360 COG0703 AroK Shikimate kinase 97.5 0.00025 5.5E-09 62.1 6.3 32 200-231 3-34 (172)
361 cd03228 ABCC_MRP_Like The MRP 97.5 0.0009 2E-08 59.1 10.1 107 196-317 25-158 (171)
362 TIGR02238 recomb_DMC1 meiotic 97.5 0.00034 7.4E-09 67.9 7.9 116 195-311 92-243 (313)
363 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00082 1.8E-08 58.4 9.6 106 196-315 22-141 (157)
364 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 9.6E-05 2.1E-09 65.9 3.7 36 202-239 2-37 (183)
365 PRK05973 replicative DNA helic 97.5 0.00031 6.8E-09 65.2 7.2 39 195-233 60-101 (237)
366 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.00089 1.9E-08 60.7 10.1 24 197-220 25-49 (200)
367 COG2874 FlaH Predicted ATPases 97.5 0.00059 1.3E-08 61.4 8.5 126 186-323 13-176 (235)
368 cd01122 GP4d_helicase GP4d_hel 97.5 0.00049 1.1E-08 65.5 8.6 38 195-232 26-67 (271)
369 PRK10416 signal recognition pa 97.5 0.0016 3.4E-08 63.5 12.2 73 198-270 113-208 (318)
370 cd03238 ABC_UvrA The excision 97.5 0.00083 1.8E-08 59.7 9.4 118 196-334 18-162 (176)
371 TIGR02782 TrbB_P P-type conjug 97.5 0.00028 6E-09 68.2 6.9 71 198-268 131-214 (299)
372 KOG3347 Predicted nucleotide k 97.4 0.00011 2.3E-09 62.2 3.3 30 201-230 9-38 (176)
373 cd03247 ABCC_cytochrome_bd The 97.4 0.0016 3.6E-08 57.8 11.3 106 196-316 25-159 (178)
374 PRK14532 adenylate kinase; Pro 97.4 0.0001 2.2E-09 66.2 3.4 37 201-239 2-38 (188)
375 PLN03187 meiotic recombination 97.4 0.00056 1.2E-08 67.1 8.9 116 195-311 122-273 (344)
376 PRK13949 shikimate kinase; Pro 97.4 0.0001 2.2E-09 65.1 3.4 31 201-231 3-33 (169)
377 PLN02200 adenylate kinase fami 97.4 0.00022 4.7E-09 66.4 5.7 41 197-239 41-81 (234)
378 cd03115 SRP The signal recogni 97.4 0.0017 3.7E-08 57.3 11.1 32 202-233 3-37 (173)
379 PRK06217 hypothetical protein; 97.4 0.00013 2.8E-09 65.3 3.8 31 201-231 3-33 (183)
380 PRK10867 signal recognition pa 97.4 0.0011 2.4E-08 67.0 10.9 74 197-270 98-195 (433)
381 TIGR00064 ftsY signal recognit 97.4 0.0026 5.6E-08 60.6 12.9 74 197-270 70-166 (272)
382 cd02021 GntK Gluconate kinase 97.4 0.00013 2.8E-09 62.9 3.6 28 202-229 2-29 (150)
383 cd03214 ABC_Iron-Siderophores_ 97.4 0.00092 2E-08 59.5 9.2 107 196-315 22-159 (180)
384 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0018 4E-08 59.9 11.5 38 195-232 16-56 (229)
385 COG1066 Sms Predicted ATP-depe 97.4 0.0024 5.1E-08 62.9 12.4 100 195-294 89-204 (456)
386 TIGR02525 plasmid_TraJ plasmid 97.4 0.00028 6.2E-09 69.9 6.2 70 200-269 150-236 (372)
387 COG4088 Predicted nucleotide k 97.4 0.00067 1.4E-08 60.7 7.8 22 202-223 4-25 (261)
388 cd03246 ABCC_Protease_Secretio 97.4 0.0019 4.2E-08 57.1 10.9 105 197-315 26-157 (173)
389 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.2E-09 64.9 3.8 35 201-237 4-38 (183)
390 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00098 2.1E-08 58.6 8.9 102 196-314 24-148 (166)
391 PF05970 PIF1: PIF1-like helic 97.4 0.00076 1.6E-08 67.1 9.1 102 198-312 21-149 (364)
392 PF10443 RNA12: RNA12 protein; 97.4 0.0033 7E-08 62.6 13.3 79 260-351 150-231 (431)
393 PF01745 IPT: Isopentenyl tran 97.4 0.0003 6.4E-09 63.4 5.5 136 202-354 4-144 (233)
394 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.5E-09 63.2 3.8 27 202-228 1-27 (163)
395 PTZ00088 adenylate kinase 1; P 97.4 0.00019 4.1E-09 66.5 4.4 37 199-237 6-42 (229)
396 cd01130 VirB11-like_ATPase Typ 97.4 0.00064 1.4E-08 61.0 7.7 72 197-268 23-110 (186)
397 TIGR01425 SRP54_euk signal rec 97.4 0.0019 4.2E-08 65.0 11.8 73 198-270 99-194 (429)
398 PRK04301 radA DNA repair and r 97.4 0.00056 1.2E-08 66.8 7.8 40 195-234 98-146 (317)
399 COG2805 PilT Tfp pilus assembl 97.4 0.00076 1.7E-08 63.7 8.2 71 200-270 126-210 (353)
400 smart00534 MUTSac ATPase domai 97.4 0.0022 4.9E-08 57.4 11.1 69 202-270 2-90 (185)
401 PRK06547 hypothetical protein; 97.3 0.00017 3.6E-09 63.9 3.4 35 197-231 13-47 (172)
402 smart00487 DEXDc DEAD-like hel 97.3 0.001 2.3E-08 58.8 8.7 24 200-223 25-49 (201)
403 cd01428 ADK Adenylate kinase ( 97.3 0.00019 4.1E-09 64.5 3.8 35 202-238 2-36 (194)
404 cd02020 CMPK Cytidine monophos 97.3 0.00019 4.1E-09 61.3 3.6 30 202-231 2-31 (147)
405 PRK13900 type IV secretion sys 97.3 0.00052 1.1E-08 67.2 7.0 71 198-268 159-245 (332)
406 PRK06696 uridine kinase; Valid 97.3 0.00037 8.1E-09 64.4 5.8 39 198-236 21-62 (223)
407 COG5245 DYN1 Dynein, heavy cha 97.3 0.0014 3E-08 73.0 10.7 180 195-389 1490-1719(3164)
408 COG0563 Adk Adenylate kinase a 97.3 0.00025 5.3E-09 63.2 4.3 33 201-235 2-34 (178)
409 COG1124 DppF ABC-type dipeptid 97.3 0.0016 3.6E-08 59.8 9.7 51 250-313 151-201 (252)
410 PRK14530 adenylate kinase; Pro 97.3 0.00021 4.6E-09 65.6 3.9 30 201-230 5-34 (215)
411 TIGR02236 recomb_radA DNA repa 97.3 0.00075 1.6E-08 65.6 7.9 40 195-234 91-139 (310)
412 COG2274 SunT ABC-type bacterio 97.3 0.0016 3.5E-08 69.8 11.0 28 196-223 496-523 (709)
413 PRK05057 aroK shikimate kinase 97.3 0.00027 5.9E-09 62.6 4.2 34 199-232 4-37 (172)
414 cd03230 ABC_DR_subfamily_A Thi 97.3 0.0021 4.6E-08 56.8 9.9 105 197-315 24-156 (173)
415 COG2884 FtsE Predicted ATPase 97.3 0.0028 6.1E-08 56.1 10.3 27 197-223 26-52 (223)
416 PF13245 AAA_19: Part of AAA d 97.3 0.00039 8.5E-09 52.7 4.4 32 201-232 12-50 (76)
417 PF00437 T2SE: Type II/IV secr 97.3 0.00028 6E-09 67.2 4.4 71 199-269 127-208 (270)
418 TIGR00767 rho transcription te 97.3 0.0017 3.7E-08 64.5 10.0 27 197-223 166-192 (415)
419 TIGR01448 recD_rel helicase, p 97.3 0.0018 3.8E-08 70.1 10.9 98 200-314 339-455 (720)
420 TIGR02533 type_II_gspE general 97.3 0.0008 1.7E-08 69.3 7.9 94 161-269 218-322 (486)
421 TIGR00959 ffh signal recogniti 97.3 0.0023 4.9E-08 64.7 10.9 73 198-270 98-194 (428)
422 TIGR02655 circ_KaiC circadian 97.2 0.0021 4.6E-08 66.4 11.0 39 195-233 17-59 (484)
423 PRK03731 aroL shikimate kinase 97.2 0.0003 6.6E-09 62.0 4.0 31 201-231 4-34 (171)
424 COG1102 Cmk Cytidylate kinase 97.2 0.00026 5.6E-09 60.8 3.3 28 202-229 3-30 (179)
425 PRK13946 shikimate kinase; Pro 97.2 0.00026 5.6E-09 63.4 3.6 33 199-231 10-42 (184)
426 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0011 2.3E-08 64.6 7.9 58 166-231 62-121 (358)
427 TIGR02655 circ_KaiC circadian 97.2 0.00095 2.1E-08 69.0 8.2 77 195-271 259-366 (484)
428 PLN02674 adenylate kinase 97.2 0.0003 6.5E-09 65.6 4.0 39 198-238 30-68 (244)
429 cd02027 APSK Adenosine 5'-phos 97.2 0.0013 2.7E-08 56.8 7.7 34 202-235 2-38 (149)
430 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0038 8.3E-08 54.3 10.6 23 201-223 4-26 (159)
431 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.0028 6E-08 57.8 10.2 24 198-221 28-51 (204)
432 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.0024 5.2E-08 58.9 9.9 24 198-221 30-53 (222)
433 PRK13833 conjugal transfer pro 97.2 0.00083 1.8E-08 65.3 7.2 71 198-268 143-225 (323)
434 PTZ00035 Rad51 protein; Provis 97.2 0.0012 2.7E-08 64.8 8.4 115 195-310 114-264 (337)
435 PRK13764 ATPase; Provisional 97.2 0.00055 1.2E-08 71.7 6.1 71 198-269 256-335 (602)
436 PRK14528 adenylate kinase; Pro 97.2 0.00029 6.3E-09 63.2 3.6 35 201-237 3-37 (186)
437 PRK08154 anaerobic benzoate ca 97.2 0.00085 1.8E-08 65.2 7.0 36 196-231 130-165 (309)
438 COG1936 Predicted nucleotide k 97.2 0.00027 5.8E-09 61.5 3.0 30 201-231 2-31 (180)
439 PRK04040 adenylate kinase; Pro 97.2 0.00033 7.2E-09 63.0 3.7 37 199-235 2-38 (188)
440 PRK02496 adk adenylate kinase; 97.2 0.00033 7.1E-09 62.6 3.7 30 201-230 3-32 (184)
441 PF00406 ADK: Adenylate kinase 97.2 0.00058 1.3E-08 58.9 5.0 35 204-240 1-35 (151)
442 cd03227 ABC_Class2 ABC-type Cl 97.2 0.0019 4.2E-08 56.5 8.4 25 198-222 20-44 (162)
443 COG1136 SalX ABC-type antimicr 97.2 0.0043 9.3E-08 57.0 10.9 26 197-222 29-54 (226)
444 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00036 7.8E-09 62.3 3.8 35 201-237 5-39 (188)
445 PRK10436 hypothetical protein; 97.2 0.0012 2.5E-08 67.5 7.9 94 162-269 195-298 (462)
446 PF05272 VirE: Virulence-assoc 97.2 0.00068 1.5E-08 61.4 5.5 111 195-335 48-169 (198)
447 TIGR02538 type_IV_pilB type IV 97.1 0.0037 8.1E-08 65.8 11.7 94 162-269 293-396 (564)
448 PF13238 AAA_18: AAA domain; P 97.1 0.00028 6.1E-09 58.6 2.7 22 202-223 1-22 (129)
449 TIGR01351 adk adenylate kinase 97.1 0.00036 7.7E-09 63.9 3.6 34 202-237 2-35 (210)
450 TIGR03499 FlhF flagellar biosy 97.1 0.0014 3.1E-08 62.8 7.9 37 198-234 193-234 (282)
451 COG4608 AppF ABC-type oligopep 97.1 0.00063 1.4E-08 63.6 5.2 92 196-297 36-156 (268)
452 cd02022 DPCK Dephospho-coenzym 97.1 0.0023 5E-08 57.0 8.6 36 202-240 2-37 (179)
453 PRK14527 adenylate kinase; Pro 97.1 0.00034 7.3E-09 63.0 3.2 37 198-236 5-41 (191)
454 PRK12726 flagellar biosynthesi 97.1 0.0034 7.4E-08 62.0 10.3 98 170-270 180-297 (407)
455 PRK00279 adk adenylate kinase; 97.1 0.00041 8.9E-09 63.7 3.8 35 201-237 2-36 (215)
456 cd02019 NK Nucleoside/nucleoti 97.1 0.00067 1.4E-08 50.4 4.2 22 202-223 2-23 (69)
457 PRK13894 conjugal transfer ATP 97.1 0.0012 2.6E-08 64.3 7.1 71 198-268 147-229 (319)
458 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0011 2.4E-08 64.6 6.8 40 195-234 92-140 (316)
459 PRK12608 transcription termina 97.1 0.0045 9.8E-08 61.0 10.9 111 200-310 134-280 (380)
460 PF09848 DUF2075: Uncharacteri 97.1 0.00088 1.9E-08 66.4 6.0 23 201-223 3-25 (352)
461 PRK13541 cytochrome c biogenes 97.1 0.0068 1.5E-07 54.6 11.4 28 196-223 23-50 (195)
462 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0031 6.6E-08 68.5 10.5 71 200-270 369-451 (744)
463 KOG0058 Peptide exporter, ABC 97.1 0.002 4.4E-08 67.5 8.7 28 195-222 490-517 (716)
464 PRK05703 flhF flagellar biosyn 97.1 0.0078 1.7E-07 61.0 12.7 37 198-234 220-261 (424)
465 PRK09302 circadian clock prote 97.1 0.004 8.7E-08 64.8 10.9 112 195-315 27-178 (509)
466 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0018 3.9E-08 60.8 7.5 34 202-235 2-38 (249)
467 KOG1808 AAA ATPase containing 97.0 0.00087 1.9E-08 77.0 6.1 129 201-345 442-595 (1856)
468 PF13479 AAA_24: AAA domain 97.0 0.00082 1.8E-08 61.7 4.9 66 200-270 4-80 (213)
469 PHA02530 pseT polynucleotide k 97.0 0.0017 3.7E-08 62.7 7.4 35 201-236 4-38 (300)
470 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.0012 2.7E-08 61.5 6.1 54 248-315 147-200 (254)
471 TIGR02788 VirB11 P-type DNA tr 97.0 0.00071 1.5E-08 65.7 4.7 73 196-268 141-228 (308)
472 cd03213 ABCG_EPDR ABCG transpo 97.0 0.0052 1.1E-07 55.4 10.0 28 196-223 32-59 (194)
473 PRK08233 hypothetical protein; 97.0 0.00065 1.4E-08 60.3 4.1 32 201-232 5-37 (182)
474 cd03232 ABC_PDR_domain2 The pl 97.0 0.0057 1.2E-07 55.1 10.2 26 197-222 31-56 (192)
475 PLN03186 DNA repair protein RA 97.0 0.0016 3.6E-08 63.9 7.1 117 195-312 119-271 (342)
476 CHL00195 ycf46 Ycf46; Provisio 97.0 0.051 1.1E-06 56.1 18.2 123 259-403 82-205 (489)
477 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.006 1.3E-07 56.3 10.5 25 198-222 29-53 (222)
478 PRK11176 lipid transporter ATP 97.0 0.0052 1.1E-07 65.1 11.5 28 196-223 366-393 (582)
479 PRK13851 type IV secretion sys 97.0 0.0006 1.3E-08 67.0 4.0 72 197-268 160-246 (344)
480 PF08303 tRNA_lig_kinase: tRNA 97.0 0.01 2.2E-07 51.5 11.0 132 205-352 5-146 (168)
481 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00065 1.4E-08 57.2 3.5 30 197-226 20-49 (133)
482 PF13086 AAA_11: AAA domain; P 97.0 0.00078 1.7E-08 61.9 4.4 23 201-223 19-41 (236)
483 PRK05541 adenylylsulfate kinas 97.0 0.00077 1.7E-08 59.7 4.2 36 197-232 5-43 (176)
484 cd03239 ABC_SMC_head The struc 97.0 0.012 2.6E-07 52.4 11.7 23 201-223 24-46 (178)
485 PF02562 PhoH: PhoH-like prote 97.0 0.0018 4E-08 58.7 6.5 23 201-223 21-43 (205)
486 cd03229 ABC_Class3 This class 97.0 0.0076 1.6E-07 53.5 10.3 106 197-315 24-162 (178)
487 TIGR01526 nadR_NMN_Atrans nico 97.0 0.002 4.4E-08 63.0 7.1 39 200-238 163-201 (325)
488 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0013 2.7E-08 65.2 5.7 71 198-268 133-222 (358)
489 KOG3928 Mitochondrial ribosome 96.9 0.03 6.5E-07 55.2 14.9 50 330-380 405-458 (461)
490 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0019 4.1E-08 58.6 6.4 41 198-238 14-55 (199)
491 PF12780 AAA_8: P-loop contain 96.9 0.0045 9.7E-08 58.8 9.1 91 166-269 9-100 (268)
492 COG2074 2-phosphoglycerate kin 96.9 0.034 7.3E-07 51.5 14.2 186 197-408 87-283 (299)
493 PRK11174 cysteine/glutathione 96.9 0.0041 8.9E-08 66.0 9.9 29 195-223 372-400 (588)
494 TIGR00152 dephospho-CoA kinase 96.9 0.0038 8.3E-08 56.0 8.3 37 202-240 2-38 (188)
495 PRK13889 conjugal transfer rel 96.9 0.0049 1.1E-07 68.3 10.5 70 201-270 364-445 (988)
496 COG0467 RAD55 RecA-superfamily 96.9 0.0012 2.5E-08 62.6 5.0 39 195-233 19-60 (260)
497 PLN02459 probable adenylate ki 96.9 0.0016 3.4E-08 61.2 5.8 36 200-237 30-65 (261)
498 cd03233 ABC_PDR_domain1 The pl 96.9 0.0078 1.7E-07 54.7 10.2 28 196-223 30-57 (202)
499 cd03278 ABC_SMC_barmotin Barmo 96.9 0.011 2.3E-07 53.6 11.0 22 201-222 24-45 (197)
500 PRK08099 bifunctional DNA-bind 96.9 0.002 4.3E-08 64.7 6.8 38 199-236 219-256 (399)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-74 Score=540.51 Aligned_cols=366 Identities=56% Similarity=0.878 Sum_probs=347.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCc
Q 039866 25 IRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGK 104 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
+.+.+.++.+...+..+..++...-..++.+|+..+++++.++.+|+.+++|.+.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~--------------------- 85 (406)
T COG1222 27 DTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDG--------------------- 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCc---------------------
Confidence 44444455555555556677777777788999999999999999999999999999976
Q ss_pred eEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHH
Q 039866 105 CVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIE 179 (418)
Q Consensus 105 ~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~ 179 (418)
.++|+++ ++++.+.|+...++||..|.++.++..++..||...++.+..|.+.+.|.++|++|+|+++++++|++
T Consensus 86 ~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE 165 (406)
T COG1222 86 RAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIRE 165 (406)
T ss_pred eEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHH
Confidence 5777765 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCC
Q 039866 180 AIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSP 259 (418)
Q Consensus 180 ~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~ 259 (418)
.+.+|+.+|++|.++|+.||+|||||||||||||+||||+|++.++.|+++.+|+++.+|+|++++.++.+|..|+.+.|
T Consensus 166 ~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 166 VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHH
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE 339 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~ 339 (418)
|||||||||+++.+|.++++++++++|+++++||+++++|++.+++-||++||+++.|||||+||||||+.|+||+|+.+
T Consensus 246 sIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 246 SIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred eEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 340 ARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 340 ~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
.|.+||+.|.+++++..+++++.+|..++|+||+||+++|.+|++.|+++.+..||++||.+|+.++..++.
T Consensus 326 gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 326 GRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998554
No 2
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-71 Score=495.14 Aligned_cols=418 Identities=82% Similarity=1.219 Sum_probs=400.8
Q ss_pred CccccccCCC-CCchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEe
Q 039866 1 MSTAMVEDSN-IEDDQLSSMTTDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEI 79 (418)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|.|+|.+.-+ -..+++-++..+.+..|...+.+++.-++.+..+++-..+..++++.+.++.+.-.+++|+.++.|.+.
T Consensus 1 ~~~~~~~~~~~~~~~e~~~mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ 80 (424)
T KOG0652|consen 1 MATAMALEEEDALDQEILSMSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVEL 80 (424)
T ss_pred CCchhhccchhhhhhhhhhccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHH
Confidence 4556654433 355677788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhcccccccccccCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhcc
Q 039866 80 LEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAM 154 (418)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (418)
+|.++...+...|+.+++++...|++.+++++ |+|+.+.|++++++|||.+.++.+++.+++.+|..|+.+++.|
T Consensus 81 ld~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaM 160 (424)
T KOG0652|consen 81 LDMDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAM 160 (424)
T ss_pred hcCCcccchhccCCcccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhccee
Confidence 99987777677799999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch
Q 039866 155 EVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 234 (418)
Q Consensus 155 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~ 234 (418)
+++..|...|.+|+|++.+++++.+++.+|+.+++.|.++|+.||+|+|+|||||||||.+||+.|.+.+..|+.+.++.
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
++..|+|++.+.++..|..++...|+||||||+|.++.+|+++...|++++|++++++|++++++.+..++-||++||+.
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCc
Q 039866 315 DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 394 (418)
Q Consensus 315 ~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~I 394 (418)
+.+||+++|+||+++.|+||.|+.+.|..|++.|.++++.+.+++++.+|+.+++|+|++.+.+|-+|++.|++++...|
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEV 400 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhccccCC
Q 039866 395 NHEDFNEGIIQVQAKKKASLNYYA 418 (418)
Q Consensus 395 t~~d~~~Al~~~~~~~~~~~~~~~ 418 (418)
+.+||.+++.+++.++++++.|||
T Consensus 401 ~heDfmegI~eVqakKka~l~yya 424 (424)
T KOG0652|consen 401 THEDFMEGILEVQAKKKASLNYYA 424 (424)
T ss_pred cHHHHHHHHHHHHHhhhhcccccC
Confidence 999999999999999999999997
No 3
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-62 Score=439.48 Aligned_cols=382 Identities=42% Similarity=0.754 Sum_probs=364.2
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccc
Q 039866 17 SSMTTDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANID 96 (418)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (418)
+.....++.-|+++++.+++.++-+-+.+++..+.++.++.+-++++++++..|++++++.+.+|.+
T Consensus 23 ~~~~~~dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqn------------- 89 (408)
T KOG0727|consen 23 SGLDKEDLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQN------------- 89 (408)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhcc-------------
Confidence 3345678899999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccCCceEEEeec----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHH
Q 039866 97 LDSQRKGKCVVLKTS----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEK 172 (418)
Q Consensus 97 ~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~ 172 (418)
..++-+|. |+.+.+.++.+.++|+..+.+...+-.+++.+|...++.+..+.....|.++|.+|+|+|-
T Consensus 90 -------t~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~ 162 (408)
T KOG0727|consen 90 -------TAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDV 162 (408)
T ss_pred -------CceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchh
Confidence 13443433 6788999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHH
Q 039866 173 QIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQ 252 (418)
Q Consensus 173 ~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~ 252 (418)
+++++++++.+|+.+.++|...|+.||+|+|+|||||||||+||+++|+...+.|+++.+|+|+.+|.|++++.++.+|.
T Consensus 163 qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfr 242 (408)
T KOG0727|consen 163 QKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFR 242 (408)
T ss_pred hHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEE
Q 039866 253 LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 332 (418)
Q Consensus 253 ~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~ 332 (418)
.++.+.|+||||||+|.++.+|.+..++.++++|++|.++|++|++++...++.||++||+.+.+||+++||||+++.|+
T Consensus 243 lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkie 322 (408)
T KOG0727|consen 243 LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 322 (408)
T ss_pred HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhhh
Q 039866 333 LPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 412 (418)
Q Consensus 333 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~ 412 (418)
||.|+..+++-++.....+++++.++|++.+..+.+..|+++|..+|++|++.|.+.++..|...||++|++.+-.+...
T Consensus 323 fplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~~~ 402 (408)
T KOG0727|consen 323 FPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKDET 402 (408)
T ss_pred CCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccccCC
Q 039866 413 SLNYYA 418 (418)
Q Consensus 413 ~~~~~~ 418 (418)
..+||.
T Consensus 403 ~~~fyk 408 (408)
T KOG0727|consen 403 QFEFYK 408 (408)
T ss_pred chhccC
Confidence 888884
No 4
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-61 Score=434.82 Aligned_cols=359 Identities=50% Similarity=0.830 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEeec--
Q 039866 34 EIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS-- 111 (418)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 111 (418)
....+++++-..+++++......++.+..++.|+..|..++++++.+|.+ +.++.++
T Consensus 70 DyLLMEEEFI~NQe~~k~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~---------------------haivst~~g 128 (440)
T KOG0726|consen 70 DYLLMEEEFIRNQERLKPQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDN---------------------HAIVSTSVG 128 (440)
T ss_pred HHHHHHHHHHhhccccCCchhhhHHHHhHHHhhcCCccccccHHHHhcCC---------------------ceEEecccC
Confidence 34456677777777777777788888899999999999999999999976 7777775
Q ss_pred ---ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccch
Q 039866 112 ---YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHK 188 (418)
Q Consensus 112 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~ 188 (418)
|+++.++|+.+.+.||+.+-++.....++..+....++-+..|.+.+.|..+|.+|+|+++++++|.+.+.+|+.||
T Consensus 129 ~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthP 208 (440)
T KOG0726|consen 129 SEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHP 208 (440)
T ss_pred chheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCH
Confidence 88999999999999999999999999999999888888888999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCC
Q 039866 189 ERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 268 (418)
Q Consensus 189 ~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid 268 (418)
+.|...|+.||++|++||+||||||.||+|+|+...+.|+++.+++++.+|.|++++.++++|..|..++|+|+||||||
T Consensus 209 E~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 209 EYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred HHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHH
Q 039866 269 AIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH 348 (418)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~ 348 (418)
.++.+|.++.+.+.+++|++++++|+++++|++++.+-||++||+.+.|||+|+||||+|+.|.||.||...+..|+..|
T Consensus 289 AiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred hhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhhhc
Q 039866 349 SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 413 (418)
Q Consensus 349 ~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 413 (418)
...+.+..+++++.+...-+.+||+||+++|.+|++.|++..+-.++++||..|...+.-++...
T Consensus 369 Ts~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g 433 (440)
T KOG0726|consen 369 TSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEG 433 (440)
T ss_pred ecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999877543
No 5
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-59 Score=417.32 Aligned_cols=370 Identities=45% Similarity=0.735 Sum_probs=352.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccc
Q 039866 21 TDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQ 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (418)
+.-....+++++.++.+..+.+.+|+++-+.+..+++-+++++.-++.++..+++|.+..+..
T Consensus 19 ~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~----------------- 81 (404)
T KOG0728|consen 19 RQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKK----------------- 81 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcc-----------------
Confidence 344577889999999999999999999999999999999999999999999999999888875
Q ss_pred cCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHH
Q 039866 101 RKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQ 175 (418)
Q Consensus 101 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 175 (418)
.++++.. .+.+...++...++++..+.+..+++.+...+|...++-+.-|-+.+.|..+|+-|+|++.+++
T Consensus 82 ----kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIk 157 (404)
T KOG0728|consen 82 ----KVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIK 157 (404)
T ss_pred ----eEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHH
Confidence 6666654 3467788888999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHH
Q 039866 176 ELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK 255 (418)
Q Consensus 176 ~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~ 255 (418)
+|.+.|.+|.++|++|..+|+..|+|+|||||||||||.+|+++|+...+.|+++++++++.+|+|++.+.++.+|-.|+
T Consensus 158 eIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar 237 (404)
T KOG0728|consen 158 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 237 (404)
T ss_pred HHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCC
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~ 335 (418)
.++|+|||+||||.+++.|.+++.+++.++|++++++|++++++....++-||++||+.+.+||+++||||+|+.|+||+
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 336 p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
|+.+.|.+|++.+.+++++...+++..+|....|-||++++.+|.+|+++|+++.+..+|.+||+-|..++..+..
T Consensus 318 p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 318 PNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred CCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987654
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.2e-55 Score=437.51 Aligned_cols=379 Identities=40% Similarity=0.741 Sum_probs=354.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccc
Q 039866 19 MTTDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLD 98 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (418)
+....+..++++++.++..++.+...++.+++..+.++.++++++++++.+|+.++++.+.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 79 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSN--------------- 79 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCC---------------
Confidence 34566778888889999999999999999999999999999999999999999999999999865
Q ss_pred cccCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHH
Q 039866 99 SQRKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQ 173 (418)
Q Consensus 99 ~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~ 173 (418)
..+++++ ++.+.+.++...++||+.+.++..+..++..+|...+..+..+.+...|.++|++|+|++.+
T Consensus 80 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~ 153 (398)
T PTZ00454 80 ------YGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQ 153 (398)
T ss_pred ------EEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHH
Confidence 5566554 45778889999999999999999999999999999988888888999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHH
Q 039866 174 IQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 253 (418)
Q Consensus 174 ~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~ 253 (418)
++.|.+.+..|+.+|+.|.++|+.+|+++|||||||||||++|+++|+.++.+|+.+.++++..+|.|+++..++.+|..
T Consensus 154 k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~ 233 (398)
T PTZ00454 154 KQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRL 233 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEc
Q 039866 254 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 254 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~ 333 (418)
++...|+||||||+|.++.++.+...+.+.++++.+.+++..++++....+++||+|||+++.+||+++|+|||+..|+|
T Consensus 234 A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~ 313 (398)
T PTZ00454 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 313 (398)
T ss_pred HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEe
Confidence 99999999999999999988866665667788899999999999888878999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhhhc
Q 039866 334 PHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 413 (418)
Q Consensus 334 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 413 (418)
+.|+.++|..|++.++.++.+..++++..++..++||+|+||.++|++|.+.|.++++..|+.+||.+|++++..+....
T Consensus 314 ~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~~ 393 (398)
T PTZ00454 314 PLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDRD 393 (398)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccccc
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999888888
Q ss_pred cccCC
Q 039866 414 LNYYA 418 (418)
Q Consensus 414 ~~~~~ 418 (418)
+.||.
T Consensus 394 ~~~~~ 398 (398)
T PTZ00454 394 YDFYS 398 (398)
T ss_pred hhccC
Confidence 88884
No 7
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.8e-52 Score=417.13 Aligned_cols=368 Identities=46% Similarity=0.768 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccC
Q 039866 25 IRASRLLDNEIRVLKEELQRTNLELD--SYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRK 102 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (418)
+-++.+++..+..|.-+.+.++++.. .++.++..+++++++++.+|+.++++.+.++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 117 (438)
T PTZ00361 57 RLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDEN------------------- 117 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCC-------------------
Confidence 56677777788888777777777764 789999999999999999999999999999976
Q ss_pred CceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHH
Q 039866 103 GKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQEL 177 (418)
Q Consensus 103 ~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l 177 (418)
..+|+++ ++.+.+.++.+.++||+.+.++..+..++..+|...+..+..+.+...|..+|++|+|++.+++.+
T Consensus 118 --~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l 195 (438)
T PTZ00361 118 --HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEI 195 (438)
T ss_pred --eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHH
Confidence 5666654 568889999999999999999999999999999999998989999999999999999999999999
Q ss_pred HHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhC
Q 039866 178 IEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 257 (418)
Q Consensus 178 ~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~ 257 (418)
.+.+..++.+|++|..+|+.+|.++|||||||||||++|+++|++++.+|+.+.++++...|.|+....++.+|..+..+
T Consensus 196 ~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~ 275 (438)
T PTZ00361 196 KEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN 275 (438)
T ss_pred HHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCC
Q 039866 258 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPS 337 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~ 337 (418)
.|+||||||||.++.++.+...+++.++++.+.++|..++++....++.||+|||+++.+|++++|+|||+..|+|+.|+
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC
Confidence 99999999999999888776667778889999999999998877788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhhhc
Q 039866 338 EEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 413 (418)
Q Consensus 338 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 413 (418)
.++|.+||+.++.++.+..++++..++..++|++|+||..+|++|++.|.++++..|+.+||..|+.++...+...
T Consensus 356 ~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~ 431 (438)
T PTZ00361 356 EKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGN 431 (438)
T ss_pred HHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccC
Confidence 9999999999999998888999999999999999999999999999999999999999999999999998765543
No 8
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-53 Score=380.68 Aligned_cols=366 Identities=43% Similarity=0.719 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhc-CCCeeEEEEEEeccCCCCchhhhcccccccc
Q 039866 25 IRASRLLDNEIRVLKEELQRTNLELDSY-----KEKVKENQEKIKLNK-QLPYLVGNIVEILEMNPEDEAEEDGANIDLD 98 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (418)
..++++++.++..+.+++..+....... -..|+ +-...+.++ ..|+++++....+..+..+.
T Consensus 44 a~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wd-l~~dkq~mq~eqplqvarctkii~~~~~d~----------- 111 (435)
T KOG0729|consen 44 AAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWD-LAADKQRMQEEQPLQVARCTKIISGNSEDP----------- 111 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHH-HhhhHHHhcccCCceeheeeeecCCCCCCc-----------
Confidence 3455555566665555555542211110 11232 223334444 47999999999888652221
Q ss_pred cccCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHH
Q 039866 99 SQRKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQ 173 (418)
Q Consensus 99 ~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~ 173 (418)
..++..- .+.....|.+-.+.+|..+.+....+.+.-.+|...+..+..|.+...|.++|.+++|+.++
T Consensus 112 ------~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeq 185 (435)
T KOG0729|consen 112 ------KYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQ 185 (435)
T ss_pred ------ceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHH
Confidence 2333221 34556778888999999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHH
Q 039866 174 IQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 253 (418)
Q Consensus 174 ~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~ 253 (418)
++.+++.+..|+.+|+.|-++|+.||+++|+|||||||||.+|+++|+..++.|+++-+|+++.+|+|++.+.++.+|+.
T Consensus 186 ieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~m 265 (435)
T KOG0729|consen 186 IEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEM 265 (435)
T ss_pred HHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEc
Q 039866 254 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 254 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~ 333 (418)
++....|+|||||||.+++.|.+.+.+++.++|++++++++++++++.++++-|+++||+|+.|||+|+||||+++.++|
T Consensus 266 artkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef 345 (435)
T KOG0729|consen 266 ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 345 (435)
T ss_pred hcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 334 PHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 334 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
..|+.+.|..|++.|.+.+.+..++-++.+|..+..-+|++|+.+|.+|++.|++..+...|..||..|+.++..
T Consensus 346 ~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 346 GLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred cCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.8e-51 Score=409.56 Aligned_cols=372 Identities=51% Similarity=0.822 Sum_probs=343.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccc
Q 039866 21 TDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQ 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (418)
...+..++++++.+...++.++.++..+.+..+.++++++++++.++.+|..++++.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------- 65 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDG----------------- 65 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCC-----------------
Confidence 345677778888999999999999999999999999999999999999999999999999965
Q ss_pred cCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHH
Q 039866 101 RKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQ 175 (418)
Q Consensus 101 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 175 (418)
.+++.++ +.++...++...+++|..+.++..+...+..+|...+..+..+.+...|...|++|+|.+++++
T Consensus 66 ----~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~ 141 (389)
T PRK03992 66 ----RVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIR 141 (389)
T ss_pred ----eEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHH
Confidence 3455543 3345556777899999999999988888889998888888888899999999999999999999
Q ss_pred HHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHH
Q 039866 176 ELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK 255 (418)
Q Consensus 176 ~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~ 255 (418)
.+.+.+..++.+++.|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++...|.|+.+..++.+|..++
T Consensus 142 ~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~ 221 (389)
T PRK03992 142 EVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR 221 (389)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCC
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~ 335 (418)
...|+||||||+|.+++.+.+....++.++++.+.+++..++++...+++.||+|||.++.+|++++|||||+..|+||+
T Consensus 222 ~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~ 301 (389)
T PRK03992 222 EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPL 301 (389)
T ss_pred hcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECC
Confidence 99999999999999998887776667788899999999999888877899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhhhc
Q 039866 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 413 (418)
Q Consensus 336 p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 413 (418)
|+.++|.+|++.++..+.+..++++..++..+.||+|+||..+|++|++.|.+++...|+.+||.+|+..++.++..+
T Consensus 302 P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 302 PDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 999999999999999988888899999999999999999999999999999999999999999999999999876654
No 10
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.3e-48 Score=387.17 Aligned_cols=356 Identities=51% Similarity=0.838 Sum_probs=325.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEe
Q 039866 30 LLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLK 109 (418)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (418)
+++.+.+.+++++..++.+.+..++++.++++++++++.+|..++++.+.++.. ..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 61 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDN---------------------RVVVK 61 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCC---------------------EEEEE
Confidence 445567777777777777777888889999999999999999999999999975 45555
Q ss_pred ec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhcc
Q 039866 110 TS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLP 184 (418)
Q Consensus 110 ~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~ 184 (418)
++ +.++...+++..+++|+.+.++..+..+...+|...+..+..+.+...|...|++|+|++++++.+.+.+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~ 141 (364)
T TIGR01242 62 SSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELP 141 (364)
T ss_pred eCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHH
Confidence 54 3456677899999999999999999888889998888888888999999999999999999999999999999
Q ss_pred ccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEE
Q 039866 185 MTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFI 264 (418)
Q Consensus 185 l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~i 264 (418)
+.+++.|..+|+.+|+++|||||||||||++|+++|+.++.+|+.+.++++...+.|.....++.+|..++...|+||||
T Consensus 142 ~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~i 221 (364)
T TIGR01242 142 LKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFI 221 (364)
T ss_pred hcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHH
Q 039866 265 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARI 344 (418)
Q Consensus 265 DEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~i 344 (418)
||+|.++..+.+...+++++.+..+.+++..++++...+++.||+|||.++.++++++++|||+..+.|+.|+.++|.+|
T Consensus 222 DEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~I 301 (364)
T TIGR01242 222 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEI 301 (364)
T ss_pred hhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHH
Confidence 99999998887666667788899999999998888777899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 345 LQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 345 l~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
++.++....+..++++..++..+.||+|+||..+|.+|++.|.++++..|+.+||..|+.++
T Consensus 302 l~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 302 LKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999988888788999999999999999999999999999999999999999999999875
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-50 Score=403.92 Aligned_cols=253 Identities=45% Similarity=0.798 Sum_probs=240.1
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..+.|+++|++|+|+++.+.+|.+.|.+|+.+|+.|.++|+.||++||||||||||||++||++|++++.+|+.+.++++
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL 504 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL 504 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
+++|+|++++.++.+|..|+..+||||||||||.++..|+++.. ....+.|.++|.+|+++....+++||++||+|+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 99999999999999999999999999999999999999864333 344578899999999999989999999999999
Q ss_pred CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC--CCC
Q 039866 316 ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD--ATE 393 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~--~~~ 393 (418)
.+|++++||||||+.|++|+|+.+.|.+|++.+++++++..++++..||..|+||||+||..+|++|+..|+++. ...
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~ 661 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATE 661 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885 578
Q ss_pred ccHHHHHHHHHHHHHhhh
Q 039866 394 VNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 394 It~~d~~~Al~~~~~~~~ 411 (418)
|+..||.+|++.+.++-.
T Consensus 662 i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 662 ITWQHFEEALKAVRPSLT 679 (693)
T ss_pred ccHHHHHHHHHhhcccCC
Confidence 999999999999987654
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-47 Score=378.55 Aligned_cols=257 Identities=40% Similarity=0.691 Sum_probs=238.4
Q ss_pred hhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 150 RVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
..+..-+..+|.++|+||+|++++..++..+|..|+++|+.|+++|+.+|.|||||||||||||.+|||+|++.+..|+.
T Consensus 496 SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 496 SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 33455677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 039866 230 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 309 (418)
Q Consensus 230 i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ 309 (418)
|.+++++.+|+|+++..++++|..|+...||||||||+|.|++.|+.+... ...+.+.+||.++++...+.+|.||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqLLtElDGl~~R~gV~via 652 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQLLTELDGLEERRGVYVIA 652 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCch---hHHHHHHHHHHHhcccccccceEEEe
Confidence 999999999999999999999999999999999999999999999776533 44578899999999998889999999
Q ss_pred EeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh--cCCCCCCCCHHHHHHHcC--CCcHHHHHHHHHHHHHH
Q 039866 310 ATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR--KMTVHPDVNFEELARSTD--DFNGAQLKAVCVEAGML 385 (418)
Q Consensus 310 ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~A~~~ 385 (418)
+||+|+.+||+++||||||..+++++|+.++|..|++.+.+ +.+++.+++++.||..+. ||||+||..||++|...
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 788889999999999766 99999999999999999
Q ss_pred HHHhC-------------C---CCccHHHHHHHHHHHHHh
Q 039866 386 ALRRD-------------A---TEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 386 A~~~~-------------~---~~It~~d~~~Al~~~~~~ 409 (418)
|+++. + ..+|..||.+|+.++.++
T Consensus 733 AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 733 ALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred HHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 98772 1 136778999999999874
No 13
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-46 Score=345.76 Aligned_cols=350 Identities=43% Similarity=0.720 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEeec-----ccc
Q 039866 40 EELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS-----YPS 114 (418)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 114 (418)
..+...+.....+.+++.+-...+..+++.+..+++|.+.+... ..+|+.+ .+.
T Consensus 24 ~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~---------------------~~iVK~s~Gpryvvg 82 (388)
T KOG0651|consen 24 SALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDE---------------------KFIVKASSGPRYVVG 82 (388)
T ss_pred hHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhcccc---------------------ceEeecCCCCcEEEE
Confidence 44455555555556666666677778888888778777777754 5666654 235
Q ss_pred cccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhc
Q 039866 115 VVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKL 194 (418)
Q Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~ 194 (418)
....++..+++.|..+...-.+..+...+|...+ .+..+......+.+|+.++|.-.++.++++.+..|+.+|++|.+.
T Consensus 83 ~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rv 161 (388)
T KOG0651|consen 83 CRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRV 161 (388)
T ss_pred cccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhcccc
Confidence 6788999999999999999888989999999888 677788888889999999999999999999999999999999999
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 274 (418)
|+.||.+++||||||||||.+|+++|..+++.|+.+..+++.++|+|++.+.+++.|..|+...||+||+||||..++.+
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr 241 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR 241 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCC
Q 039866 275 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTV 354 (418)
Q Consensus 275 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~ 354 (418)
....++.+.+++++|.++++++++++..+++.+|+|||+|+.|+|+|+||||+++.+++|.|+...|..|++.+...+..
T Consensus 242 ~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~ 321 (388)
T KOG0651|consen 242 FSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF 321 (388)
T ss_pred eccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 355 HPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 355 ~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
...++.+.+.+..+||.|+|+++.|++|.+.|....+..+-.+||..+++++...+.
T Consensus 322 ~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kk 378 (388)
T KOG0651|consen 322 HGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKK 378 (388)
T ss_pred cccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999887554
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-45 Score=370.77 Aligned_cols=260 Identities=38% Similarity=0.715 Sum_probs=237.1
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..+.|++.|+||+|+++++..|.+.|..|+.||++|.. |+++..|+|||||||||||.+|||+|.++...|+.+.++++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 45679999999999999999999999999999999976 77888899999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC--CCCCeEEEEEeCC
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--SDDRIKVIAATNR 313 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~vivI~ttn~ 313 (418)
...|+|+++..+|.+|+.|+...||||||||+|.++|+|+.++++|. -+-++..|+|.++|++. +...+.||++||+
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999988877764 45678899999999987 4568999999999
Q ss_pred CCCCChhhhCCCCceeEEEcCCC-CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhC-
Q 039866 314 ADILDPALMRSGRLDRKIELPHP-SEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRD- 390 (418)
Q Consensus 314 ~~~l~~~l~r~~Rf~~~i~~~~p-~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~-g~s~~di~~l~~~A~~~A~~~~- 390 (418)
|+.+||+|+||||||..+++.++ +.+.+..+++...+++.++.++++..+|+++. .+||+|+..+|..|++.|++|.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i 900 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877 55778899999999999999999999999775 6999999999999999998872
Q ss_pred ----------------CCCccHHHHHHHHHHHHHhhh-hccccC
Q 039866 391 ----------------ATEVNHEDFNEGIIQVQAKKK-ASLNYY 417 (418)
Q Consensus 391 ----------------~~~It~~d~~~Al~~~~~~~~-~~~~~~ 417 (418)
.-.|+++||.++.++++++.+ .++.+|
T Consensus 901 ~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~y 944 (953)
T KOG0736|consen 901 HDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRY 944 (953)
T ss_pred HHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHH
Confidence 235899999999999999766 444444
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=358.04 Aligned_cols=245 Identities=39% Similarity=0.634 Sum_probs=232.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
.++.|+|+-|.|++++++.+.+ ..++.|+.|.++|-+-|+||||+||||||||+||||+|.+.+.||++..+++|-+.|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 3678999999999999999855 678999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~ 319 (418)
+|.+.+.++.+|..|+.+.||||||||||.++.+|..+.. + ....++.|+|.+|+++..+..+|||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--H-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--H-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 9999999999999999999999999999999998854332 2 567899999999999999999999999999999999
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 399 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~ 399 (418)
+|.||||||+.|.+|.||...|.+|++.++.++.++.++|+.-||+-+.||+|+||.++++.|+..|...+...|++.|+
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~L 534 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHL 534 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 039866 400 NEGIIQVQA 408 (418)
Q Consensus 400 ~~Al~~~~~ 408 (418)
+.|-.++..
T Consensus 535 E~akDrIlM 543 (752)
T KOG0734|consen 535 EFAKDRILM 543 (752)
T ss_pred hhhhhheee
Confidence 999888764
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.4e-42 Score=347.71 Aligned_cols=376 Identities=29% Similarity=0.486 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEe-ccCC-------CCchhhhccccccccc
Q 039866 28 SRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEI-LEMN-------PEDEAEEDGANIDLDS 99 (418)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~ 99 (418)
+.+++.++..+.++..+|.+.++..++++.+++++++++..+|..++++... .+.. .+...+.+.+.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 82 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEVFTAGRRMRVTVSPNVNAAE 82 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEEEeCCceEEEEeCCCCCHHH
Confidence 4567888889999999999999999999999999999999999999999986 3321 1334556777888888
Q ss_pred ccCCceEEEeec-------------------------------------ccccccccCCCCCCCCCEEEEcCCcceeeec
Q 039866 100 QRKGKCVVLKTS-------------------------------------YPSVVGLVDPDKLKPGDLVGVNKDSYLILDT 142 (418)
Q Consensus 100 ~~~~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 142 (418)
..+|..+.+..+ +..+...+....+++|+.+.+..+..+.+..
T Consensus 83 l~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (512)
T TIGR03689 83 LVPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEA 162 (512)
T ss_pred CCCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhc
Confidence 888876666533 2233444555678999999998887777777
Q ss_pred CCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 143 LPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+|.. .+..+.....|..+|++|+|++.+++.+++.+..++.++++|..+|+.+|+++|||||||||||++|+++|++
T Consensus 163 ~~~~---~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 163 VPKA---EVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHh---HHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 7743 2445566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCc----------EEEEccchhhhhhhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 223 TNAT----------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 223 l~~~----------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
++.+ |+.+..+++..+|.|+++..++.+|..++.. .|+||||||+|.++++|..+... + .-...
T Consensus 240 L~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~-d-~e~~i 317 (512)
T TIGR03689 240 LAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS-D-VETTV 317 (512)
T ss_pred hccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc-h-HHHHH
Confidence 8543 6677778899999999999999999988763 68999999999999877432221 1 12355
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc-CCCC---------CCC
Q 039866 289 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK-MTVH---------PDV 358 (418)
Q Consensus 289 l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~-~~~~---------~~~ 358 (418)
+.++|..++++...++++||+|||+++.+||+++|||||+..|+|+.|+.++|.+|++.++.. +++. ...
T Consensus 318 l~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a 397 (512)
T TIGR03689 318 VPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREA 397 (512)
T ss_pred HHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHH
Confidence 678888888888778999999999999999999999999999999999999999999998764 3331 111
Q ss_pred CHHHHHH-----------------------------HcCCCcHHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHH
Q 039866 359 NFEELAR-----------------------------STDDFNGAQLKAVCVEAGMLALRR----DATEVNHEDFNEGIIQ 405 (418)
Q Consensus 359 ~~~~la~-----------------------------~~~g~s~~di~~l~~~A~~~A~~~----~~~~It~~d~~~Al~~ 405 (418)
+...++. .++.+||+.|.++|..|...|+.+ +...|+.+|+..|+..
T Consensus 398 ~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 398 TAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 2222222 145688999999999999999866 4568999999999987
Q ss_pred HHH
Q 039866 406 VQA 408 (418)
Q Consensus 406 ~~~ 408 (418)
-..
T Consensus 478 e~~ 480 (512)
T TIGR03689 478 EFR 480 (512)
T ss_pred hhc
Confidence 654
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=336.63 Aligned_cols=253 Identities=39% Similarity=0.622 Sum_probs=229.0
Q ss_pred cccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 154 MEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 154 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
..+...|.+.|+||.|+.++++-|.+++.+|+..|+.|+.+. +|.++||++||||||||+||||+|.+++..|+.|+.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 334566889999999999999999999999999999998764 7899999999999999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC----CeEEEE
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD----RIKVIA 309 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~----~vivI~ 309 (418)
.+.++|.|++++.++-+|+.|+.++|++|||||||.|++.|+.+ +.|..-.+.-.+||.+|++..... .|+|++
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 99999999999999999999999999999999999999998655 334444556677888888765432 388899
Q ss_pred EeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 039866 310 ATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 310 ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 389 (418)
+||.|+.+|.+|+| ||...|++|+|+.+.|..+++..++.....+++++..|+..++||||+||.++|++|.+.+.++
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-----------------CCCccHHHHHHHHHHHHHhhh
Q 039866 390 D-----------------ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 390 ~-----------------~~~It~~d~~~Al~~~~~~~~ 411 (418)
. ...|+..||+.|+++++++-.
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 2 235999999999999988655
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.1e-43 Score=315.24 Aligned_cols=302 Identities=29% Similarity=0.497 Sum_probs=248.2
Q ss_pred ccccccccCCceEEEeec-ccccccccCCC-----CCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccc
Q 039866 94 NIDLDSQRKGKCVVLKTS-YPSVVGLVDPD-----KLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDI 167 (418)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 167 (418)
.+.++++.+|...+++.. |+.....++.= .+-|.....+++.++..+. -|... .-...++.+|+++
T Consensus 52 ~F~~YArdQW~Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~~~-------~~e~~~~it~ddV 123 (368)
T COG1223 52 VFNIYARDQWLGEVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPREE-------DREIISDITLDDV 123 (368)
T ss_pred HHHHHHHHhhcceeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccchh-------hhhhhccccHhhh
Confidence 567788888888887765 33333333221 1112222222222222221 11111 1123467899999
Q ss_pred cCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHH
Q 039866 168 GGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 247 (418)
Q Consensus 168 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~ 247 (418)
+||+++++..+- +...+.+|+.|.++ .|++||||||||||||++|+++|++...|++.++..++++.++|++...+
T Consensus 124 iGqEeAK~kcrl-i~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~I 199 (368)
T COG1223 124 IGQEEAKRKCRL-IMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRI 199 (368)
T ss_pred hchHHHHHHHHH-HHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHH
Confidence 999999998654 55668889988875 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCc
Q 039866 248 RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRL 327 (418)
Q Consensus 248 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf 327 (418)
+.+++.|+..+|||+||||+|.++-.|..++.-| ++....+.||.+++++..+..++.|++||+|+.|||++++ ||
T Consensus 200 hely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RF 275 (368)
T COG1223 200 HELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RF 275 (368)
T ss_pred HHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hh
Confidence 9999999999999999999999988776655544 4778889999999999999999999999999999999999 99
Q ss_pred eeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 328 DRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLK-AVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 328 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~-~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
...|+|.+|+.++|.+|++.+..++++.-+.++..++..+.|+||+||. .+++.|...|+..++..|+.+||..|+++.
T Consensus 276 EeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 276 EEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKE 355 (368)
T ss_pred hheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhh
Confidence 9999999999999999999999999999899999999999999999998 488889999999999999999999999985
Q ss_pred HHhhh
Q 039866 407 QAKKK 411 (418)
Q Consensus 407 ~~~~~ 411 (418)
...+.
T Consensus 356 r~~r~ 360 (368)
T COG1223 356 RKRRA 360 (368)
T ss_pred ccccC
Confidence 55443
No 19
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-43 Score=347.21 Aligned_cols=224 Identities=48% Similarity=0.805 Sum_probs=209.3
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
+++|.+|+|.+..+.++.+.+.. +.+|+.|..+|+.||+|||||||||||||+||+++|.+++.||+.|+.+++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 67899999999999999998877 99999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHH-HHHHHHHHHhhcCCCCC----CCeEEEEEeCCCC
Q 039866 241 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREV-QRTMLELLNQLDGFSSD----DRIKVIAATNRAD 315 (418)
Q Consensus 241 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~~~~----~~vivI~ttn~~~ 315 (418)
|+++..++.+|+.|....|||+||||||.+.++|...+ .++ ++++.|||..|++.... ..|+||++||+|+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq----reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ----REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH----HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 99999999999999999999999999999999985532 233 45666777777766543 5799999999999
Q ss_pred CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 039866 316 ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 389 (418)
.+||+|+|+|||++.|.+..|+..+|.+||+..++++.++.++++..||+.|.||.|+||.++|.+|+..|++|
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=355.88 Aligned_cols=248 Identities=44% Similarity=0.754 Sum_probs=233.2
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
..+.|.|+.|+++++++|.+.+ ..+++|+.|.++|++.|+|+||+||||||||.||||+|.+.+.||+.+++++|++.+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 3489999999999999999965 679999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD-SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
+|.....++.+|..++.+.|||+||||||.++..|++ ....++.+-..+|+|+|-++|++.....++|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999853 233456677789999999999999999999999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 397 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~ 397 (418)
++++||||||+.|.++.|+...|.+|++.|++..++. .++++..+|..|.||+|+||.++|++|+..|.+++...|+..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~ 544 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTK 544 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchh
Confidence 9999999999999999999999999999999999886 778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 039866 398 DFNEGIIQVQA 408 (418)
Q Consensus 398 d~~~Al~~~~~ 408 (418)
||..|+..+..
T Consensus 545 ~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 545 DLEYAIERVIA 555 (774)
T ss_pred hHHHHHHHHhc
Confidence 99999996654
No 21
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-41 Score=341.22 Aligned_cols=249 Identities=43% Similarity=0.742 Sum_probs=240.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
...+.|.|+.|.+++++++.+.+ .++++|..|..+|..-|+++|++||||||||+|||++|.+.+.||+.+++|+|+..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 45689999999999999999955 67899999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
|+|-+...+|.+|..++.+.|||+||||||+.+..|..+..+++.+..+++.|+|.++|++..+..++||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999988777788888899999999999999888999999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d 398 (418)
|+|+||||||+.|.++.||...|.+|++.|++..++..++++..+|+.+.||+|+|+.+++++|+..|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 039866 399 FNEGIIQVQA 408 (418)
Q Consensus 399 ~~~Al~~~~~ 408 (418)
|.+|..++..
T Consensus 383 i~ea~drv~~ 392 (596)
T COG0465 383 IEEAIDRVIA 392 (596)
T ss_pred hHHHHHHHhc
Confidence 9999999986
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=303.16 Aligned_cols=234 Identities=37% Similarity=0.673 Sum_probs=211.1
Q ss_pred hhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 150 RVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
.+....+...|++.|++|.|++.+++.|.+++++|++.|++|..- -.|.+++||||||||||++||+++|.+.+..|+.
T Consensus 118 ~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 118 ALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred HhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 334455667899999999999999999999999999999999764 3678899999999999999999999999999999
Q ss_pred EccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-CCeEEE
Q 039866 230 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVI 308 (418)
Q Consensus 230 i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~vivI 308 (418)
++.|+++++|.|++++.++++|+.|+.+.|+||||||||.+|+.|+++.+.. ..++-.++|-+|.+...+ ..++|+
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEsea---sRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEA---SRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHH---HHHHHHHHHHhhhccccCCCceEEE
Confidence 9999999999999999999999999999999999999999999887665443 345566788888887654 479999
Q ss_pred EEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 309 AATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 309 ~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
++||-|+.||.+++| ||+..|++|+|....|..+++.++...+.. .+.|+..|+..++||||+||.-+++.|.+..+
T Consensus 274 gATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePv 351 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPV 351 (439)
T ss_pred ecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhH
Confidence 999999999999999 999999999999999999999999887765 66789999999999999999999999999887
Q ss_pred Hh
Q 039866 388 RR 389 (418)
Q Consensus 388 ~~ 389 (418)
++
T Consensus 352 Rk 353 (439)
T KOG0739|consen 352 RK 353 (439)
T ss_pred HH
Confidence 66
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=9.9e-39 Score=342.48 Aligned_cols=252 Identities=46% Similarity=0.788 Sum_probs=231.7
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..|...|++|+|++.+++.|.+.+..++.+++.|.++|+.+|+++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
+|+|+++..++.+|..++...|+||||||+|.+++.++.... .....+.+.++|..++++....+++||+|||+++.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999988754322 223456778889999988778899999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC-------
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------- 390 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------- 390 (418)
|++++|||||+..+++|+|+.++|.+||+.+.++.++..++++..+|..++||||+||..+|++|.+.|+++.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~ 683 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKE 683 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999999999998889999999999999999999999999999998742
Q ss_pred -----------CCCccHHHHHHHHHHHHHhhh
Q 039866 391 -----------ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 391 -----------~~~It~~d~~~Al~~~~~~~~ 411 (418)
...|+.+||..|+.++.++-.
T Consensus 684 ~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 684 KLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred hhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 136999999999999887544
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.1e-38 Score=324.65 Aligned_cols=250 Identities=44% Similarity=0.783 Sum_probs=231.1
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..|..+|++|+|++++++.+.+.+.. +.+++.|...|..+|+++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35778999999999999999987664 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
.+.|.....++.+|..++...|+||||||||.+++.+......++.+....+.++|..++++....+++||+|||+++.+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998876554444566778888999999988888899999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 397 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~ 397 (418)
||+++|||||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||.++|++|...|.+++...|+.+
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~ 286 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMN 286 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999999988777788999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHH
Q 039866 398 DFNEGIIQVQA 408 (418)
Q Consensus 398 d~~~Al~~~~~ 408 (418)
||..|+..+..
T Consensus 287 ~l~~a~~~~~~ 297 (495)
T TIGR01241 287 DIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=327.88 Aligned_cols=249 Identities=45% Similarity=0.732 Sum_probs=231.7
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..+.+.|.+++|.+.+++.+.+.+..++.+++.|.+.+++++.++|||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
+|+|+++..++.+|..|+...||||||||+|.+++.|+.+..++ ..+.+.+++..+++.....+++||++||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS---GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH---HHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999886544332 257788889999988888899999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCC--CCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC-CCCc
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTV--HPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEV 394 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-~~~I 394 (418)
|++++|||||+..+++|+|+..+|.+|++.++..... ..++++..++..+.||+|+||..+|++|.+.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999985543 578999999999999999999999999999999998 7889
Q ss_pred cHHHHHHHHHHHHHh
Q 039866 395 NHEDFNEGIIQVQAK 409 (418)
Q Consensus 395 t~~d~~~Al~~~~~~ 409 (418)
|.+||..|++.+.++
T Consensus 472 ~~~~~~~a~~~~~p~ 486 (494)
T COG0464 472 TLDDFLDALKKIKPS 486 (494)
T ss_pred cHHHHHHHHHhcCCC
Confidence 999999999996654
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-38 Score=312.92 Aligned_cols=227 Identities=40% Similarity=0.657 Sum_probs=214.0
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
....|++|+|..++++.+.+.+.+|.++|.+|...+++-+.|+|||||||||||+||.++|..++..|+.+.++++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~ 319 (418)
+|.++..++.+|+.|+...||||||||+|.++|+|+-..++- .-+...|+|.++++..+-..+.|+++|.+|+.+||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 999999999999999999999999999999999996544332 24677889999999888889999999999999999
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 389 (418)
+++||||+|+.++-|.|+..+|.+|++..........++|++-+|..|+||||+||+.+|..|.+.|..+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888755
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-38 Score=296.15 Aligned_cols=243 Identities=38% Similarity=0.656 Sum_probs=217.5
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcC-CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
.++|++|+|++.+++++.+.+..|+.+|++|...+ +.|++|+|||||||||||++|+++|++.+++|+-+.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 36799999999999999999999999999997544 57899999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC--eEEEEEeCCCCCC
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR--IKVIAATNRADIL 317 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~--vivI~ttn~~~~l 317 (418)
+|+.++.++.+|..+..-.|++|||||+|.+...|. ...|......-.+++..-+++.++.+ ++|+++||+|..+
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 999999999999999999999999999999998882 22244444444677777777776654 9999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh----C---
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR----D--- 390 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~----~--- 390 (418)
|.+++| |++..++++.|+..+|.+|++..++...+++++|+..+|..+.||||+||..+|..|+...++. .
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999887654 1
Q ss_pred ---------------------CCCccHHHHHHHHHHHHH
Q 039866 391 ---------------------ATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 391 ---------------------~~~It~~d~~~Al~~~~~ 408 (418)
...++++||..|...+..
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~ 361 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSA 361 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence 246889999999996554
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.4e-37 Score=321.00 Aligned_cols=248 Identities=44% Similarity=0.746 Sum_probs=229.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+...|++|+|.+++++.+.+.+ ..+.+++.|..+|..+|+++||+||||||||++|+++|.+++.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4578999999999999998865 457889999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~ 319 (418)
.|.....++.+|..++...|+||||||+|.++..+..+...++.+.+..+.++|..++++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99888889999999999999999999999999887655555667778889999999998888889999999999999999
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 399 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~ 399 (418)
+++|||||++.+.+++|+.++|.+|++.+++...+..+.++..+|..+.||+|+||.++|++|+..|.+++...|+.+||
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999998777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 039866 400 NEGIIQVQA 408 (418)
Q Consensus 400 ~~Al~~~~~ 408 (418)
..|+..+..
T Consensus 417 ~~Ai~rv~~ 425 (638)
T CHL00176 417 DTAIDRVIA 425 (638)
T ss_pred HHHHHHHHh
Confidence 999998743
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.1e-37 Score=311.34 Aligned_cols=242 Identities=27% Similarity=0.438 Sum_probs=209.5
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+..+|++|+|++..++.+.+.... ......++|+++|+++|||||||||||++|+++|++++.+++.++++.+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999999876532 23345678999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~ 319 (418)
+|+++..++.+|..++...||||||||||.++..+..... +....+.+.+++..++. ...+++||+|||.++.+||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999999875433222 22334556666666553 3467999999999999999
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 397 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~ 397 (418)
+++|+|||+..++++.|+.++|.+|++.++.+.... .+.++..++..+.||||+||.++|.+|...|..+++ .++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHH
Confidence 999999999999999999999999999999886543 478899999999999999999999999999987764 58999
Q ss_pred HHHHHHHHHHHh
Q 039866 398 DFNEGIIQVQAK 409 (418)
Q Consensus 398 d~~~Al~~~~~~ 409 (418)
||..|+..+.+.
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999998873
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.2e-34 Score=305.11 Aligned_cols=247 Identities=41% Similarity=0.723 Sum_probs=228.4
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
...|.++.|.+.++..+.+.+.. +..+..+..++...|+++||+||||||||++|++++.+++.+|+.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45789999999999999987765 56777888888888999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChh
Q 039866 241 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPA 320 (418)
Q Consensus 241 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~ 320 (418)
|.....++.+|..++...|+||||||+|.++..+..+...++.+....+.++|..++++..+..++||+|||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999998886655555667778889999999998888899999999999999999
Q ss_pred hhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 321 LMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 321 l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
++|||||++.+.++.|+.++|.+|++.++...++..++++..++..+.||||+||.++|++|+..|.+.++..|+..||.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 039866 401 EGIIQVQA 408 (418)
Q Consensus 401 ~Al~~~~~ 408 (418)
.|+..+..
T Consensus 387 ~a~~~v~~ 394 (644)
T PRK10733 387 KAKDKIMM 394 (644)
T ss_pred HHHHHHhc
Confidence 99987754
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.1e-34 Score=311.90 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=180.5
Q ss_pred hHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh----------hc----------------
Q 039866 188 KERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF----------IG---------------- 241 (418)
Q Consensus 188 ~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~----------~g---------------- 241 (418)
+..+.++|+.||+|+||+||||||||+||||+|.+++.||+.+++++++..+ +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3455788999999999999999999999999999999999999999998654 11
Q ss_pred ---------------chH--HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC---C
Q 039866 242 ---------------DGA--KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS---S 301 (418)
Q Consensus 242 ---------------~~~--~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~---~ 301 (418)
.+. ..++.+|+.|+..+||||||||||.++.+. .. ...+.+++..+++.. +
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~--~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SN--YLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cc--eehHHHHHHHhccccccCC
Confidence 122 237889999999999999999999997652 11 123567777777653 4
Q ss_pred CCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHH--hhcCCCCC-CCCHHHHHHHcCCCcHHHHHHH
Q 039866 302 DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH--SRKMTVHP-DVNFEELARSTDDFNGAQLKAV 378 (418)
Q Consensus 302 ~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~--~~~~~~~~-~~~~~~la~~~~g~s~~di~~l 378 (418)
..+++||||||+|+.+|||++||||||+.|.++.|+..+|.+++... .+++.+.. .+++..+|..|.||+|+||.++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 56899999999999999999999999999999999999999988754 34555553 3689999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 379 CVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 379 ~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
|++|+..|+++++..|+.++|..|+.+....
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987653
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=283.66 Aligned_cols=241 Identities=42% Similarity=0.734 Sum_probs=221.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+... .+++|...++..+.+.+..++.++..+..+|+++|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4455 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCC-CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 240 IGDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
.|+++..++..|+.+..+. |+++||||+|.++++|..... ...+...+++..+++..+.++++||++||+|+.+|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998854332 23455566777777777788999999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d 398 (418)
++++| |||++.+.+..|+..+|.+|++.++..+++.+++++..+|..++||+|+|+..+|.+|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999887 8888
Q ss_pred HHHHHHHHHHhhh
Q 039866 399 FNEGIIQVQAKKK 411 (418)
Q Consensus 399 ~~~Al~~~~~~~~ 411 (418)
|..|+..++++..
T Consensus 409 ~~~A~~~i~psa~ 421 (693)
T KOG0730|consen 409 FQEALMGIRPSAL 421 (693)
T ss_pred HHHHHhcCCchhh
Confidence 9988888777544
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-34 Score=300.68 Aligned_cols=249 Identities=39% Similarity=0.666 Sum_probs=218.2
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccch
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQ 234 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~ 234 (418)
..+.|++|+|+++.+..+++.+..|+.||+.|..+++.||+++||+||||||||..|+++|..+ ...|+.-++.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4578999999999999999999999999999999999999999999999999999999999987 35677778899
Q ss_pred hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
..++|+|+.+..++.+|+.|+...|+|+|+||||-|++.|+.....-|..+ ...+|..|++.++.+.++||++||++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SI---vSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASI---VSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhH---HHHHHHhccCCCCCCceEEEcccCCc
Confidence 999999999999999999999999999999999999998865444434433 44555666777888999999999999
Q ss_pred CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCC--
Q 039866 315 DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA-- 391 (418)
Q Consensus 315 ~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~-- 391 (418)
+.++|+++|||||++.++||.|+.+.|.+|+..+.++.... .......+|..+.||.|+||+.+|.+|++.+.++.-
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999999999999999999999999999999999876633 234577899999999999999999999999998732
Q ss_pred --------------CCccHHHHHHHHHHHHHhhh
Q 039866 392 --------------TEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 392 --------------~~It~~d~~~Al~~~~~~~~ 411 (418)
..|...||..|+.+.-+.-.
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCCCC
Confidence 24778888888887766433
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.7e-32 Score=292.88 Aligned_cols=249 Identities=45% Similarity=0.766 Sum_probs=220.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.+..+|++|+|++.+++.+.+.+..++.+|+.|..+|+.+++++|||||||||||++|+++|++++.+++.++++++..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
+.|..+..++.+|..+....|+||||||+|.+++++.......+. +...+++..+++....++++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~---~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK---RVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH---HHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998876443222222 33445555555556667899999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC--------
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-------- 390 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-------- 390 (418)
++++++|||+..+.++.|+.++|.+|++.+.+.+.+..+.++..++..++||+++|+..+|+.|.+.+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999998888888899999999999999999999999999887652
Q ss_pred -----------CCCccHHHHHHHHHHHHHhh
Q 039866 391 -----------ATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 391 -----------~~~It~~d~~~Al~~~~~~~ 410 (418)
...++.+||..|+..+.++.
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12578899999999887654
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-33 Score=270.60 Aligned_cols=252 Identities=36% Similarity=0.596 Sum_probs=215.2
Q ss_pred CCCCCcc--ccCcHHHHHHHHH-HhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC-cEEEEccchh
Q 039866 160 PTEDYND--IGGLEKQIQELIE-AIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-TFLKLAGPQL 235 (418)
Q Consensus 160 ~~~~~~~--i~G~~~~~~~l~~-~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~-~~~~i~~s~l 235 (418)
|...|++ |+|++.....|.+ +.....--|+...++|++.-+|+|||||||||||.+||.+..-+++ +=-.+|++++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5667776 6899999888765 4555567788999999999999999999999999999999998853 3456899999
Q ss_pred hhhhhcchHHHHHHHHHHHHhCC--------CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKS--------PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~--------~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
.++|+|+++..++.+|..|.... -.||+|||||.+|.+|++...+. .---....|||..+++...-.+++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcEEE
Confidence 99999999999999999885421 25999999999999986544321 1112467788999999988899999
Q ss_pred EEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC----CCCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Q 039866 308 IAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAG 383 (418)
Q Consensus 308 I~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~g~s~~di~~l~~~A~ 383 (418)
|+.||+++.+|.+|+|||||...+++.+||+..|.+|++.|...+ .++.++|+..+|..|..|||++|..+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765 3458899999999999999999999999999
Q ss_pred HHHHHhC---------------CCCccHHHHHHHHHHHHHhhhh
Q 039866 384 MLALRRD---------------ATEVNHEDFNEGIIQVQAKKKA 412 (418)
Q Consensus 384 ~~A~~~~---------------~~~It~~d~~~Al~~~~~~~~~ 412 (418)
-.|..|. .-.|+++||..|+.++++.+..
T Consensus 453 S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred HHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 9998772 2369999999999999987653
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=267.38 Aligned_cols=253 Identities=36% Similarity=0.594 Sum_probs=218.5
Q ss_pred hccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 152 KAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 152 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
........+++.|+++.|++.+++.+.+.+.+|+.++++|..+. .|++++|+.||||||||+|++++|.+++..|+.+.
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 33345566789999999999999999999999999999998875 57789999999999999999999999999999999
Q ss_pred cchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC--CCCCCeEEEE
Q 039866 232 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIA 309 (418)
Q Consensus 232 ~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~vivI~ 309 (418)
.+.+.++|+|+.+..++.+|..|+...|+|+||||+|.++..|.+.....+ .+...++|-..++. ....+++||+
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~s---rr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESS---RRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccc---hhhhhHHHhhhccccCCCCCeEEEEe
Confidence 999999999999999999999999999999999999999999855544333 34555566554443 3345899999
Q ss_pred EeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 039866 310 ATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388 (418)
Q Consensus 310 ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 388 (418)
|||+|+.+|.+++| ||...+++|+|+.+.|..+|+..+.+.+.. .+.++..+++.++||++.||.++|++|++.-.+
T Consensus 296 aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 296 ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 99999999999999 999999999999999999999999876333 567899999999999999999999999877654
Q ss_pred hC-------------CCCccHHHHHHHHHHHHHhh
Q 039866 389 RD-------------ATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 389 ~~-------------~~~It~~d~~~Al~~~~~~~ 410 (418)
.. ...|+..||..|++.+.++-
T Consensus 374 ~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 374 ELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred hcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 42 24578889999999887744
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=6.9e-30 Score=243.87 Aligned_cols=204 Identities=17% Similarity=0.232 Sum_probs=156.5
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
...+|+++.|--.+.....+.+...+.. .....+|+++|.+++||||||||||++|+++|++++.+++.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~k-n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAK-NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHh-hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3456777744433333333322211111 123346789999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHh-----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC------------CCC
Q 039866 240 IGDGAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF------------SSD 302 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~~~ 302 (418)
+|++++.++.+|..|+. ..||||||||||.+++.+.++. +....+....+||+.+++. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 4699999999999999885322 1111222224566555431 345
Q ss_pred CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCC
Q 039866 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDD 369 (418)
Q Consensus 303 ~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 369 (418)
.+++||+|||+|+.|+|+|+|+|||+..+ ..|+.++|.+|++.+++...++ ..++..|+..+.|
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 67999999999999999999999999864 5899999999999999987765 5677888887766
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-24 Score=222.34 Aligned_cols=189 Identities=19% Similarity=0.300 Sum_probs=153.5
Q ss_pred eecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCC----CCCCceeecCCCCcHHHH
Q 039866 140 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLM 215 (418)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~l 215 (418)
|+.+|...........+.+.+...-..|+||++++..+.++|. ..+.|+. |..++||.||+|+|||.|
T Consensus 466 ~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIr--------raRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 466 WTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR--------RARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred HHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHH--------HHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 6666665444444445555566667889999999999999994 4455654 334699999999999999
Q ss_pred HHHHHHHhC---CcEEEEccchhhhh------------hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCC
Q 039866 216 ARACAAQTN---ATFLKLAGPQLVQM------------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS 280 (418)
Q Consensus 216 akala~~l~---~~~~~i~~s~l~~~------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 280 (418)
|+++|..+. ..++++|||+|+.+ |+|+.++. .+++.++++++|||+||||++.
T Consensus 538 AkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEKA---------- 605 (786)
T COG0542 538 AKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEKA---------- 605 (786)
T ss_pred HHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhhc----------
Confidence 999999984 89999999999865 44554443 6899999999999999999998
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCC------CeEEEEEeCCC----------------------------CCCChhhhCCCC
Q 039866 281 GDREVQRTMLELLNQLDGFSSDD------RIKVIAATNRA----------------------------DILDPALMRSGR 326 (418)
Q Consensus 281 ~~~~~~~~l~~ll~~~~~~~~~~------~vivI~ttn~~----------------------------~~l~~~l~r~~R 326 (418)
|+++.+.|+|+|+.+.-.++.+ +++||+|||-- ..+.|+|++ |
T Consensus 606 -HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--R 682 (786)
T COG0542 606 -HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--R 682 (786)
T ss_pred -CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--h
Confidence 9999999999999877666655 68899999941 247899999 9
Q ss_pred ceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 327 LDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 327 f~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
++.+|.|.+++.+...+|+...+..
T Consensus 683 id~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 683 IDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cccEEeccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877643
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=2.8e-22 Score=191.63 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=156.7
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCC---CceeecCCCCcHHHHHHHHHHHh-------CCcEEEEcc
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPK---GVLLYGPPGTGKTLMARACAAQT-------NATFLKLAG 232 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~---~vLl~Gp~GtGKT~lakala~~l-------~~~~~~i~~ 232 (418)
.+.+++|++++++.|.+.+.. +..+..+.+.|+.++. +++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 456899999999999997755 4455677778876543 48999999999999999999875 246899999
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
+++...++|+++.....++..+. ++||||||++.++..+.. .....+.+..|+.+++. ...+++||++++
T Consensus 100 ~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~ 169 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN-----QRDDLVVIFAGY 169 (287)
T ss_pred HHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCC
Confidence 99999999988777777777653 469999999998654321 12234566666666653 235678888876
Q ss_pred CCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHH------cCCCc-HHHHHHHH
Q 039866 313 RAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARS------TDDFN-GAQLKAVC 379 (418)
Q Consensus 313 ~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~------~~g~s-~~di~~l~ 379 (418)
... .++|++.+ ||+..|.|++|+.+++.+|+..++.+....- +.....+... ...|. ++.+++++
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 432 34699999 9999999999999999999999997654331 1122222221 12333 79999999
Q ss_pred HHHHHHHHHh
Q 039866 380 VEAGMLALRR 389 (418)
Q Consensus 380 ~~A~~~A~~~ 389 (418)
..|......|
T Consensus 248 e~~~~~~~~r 257 (287)
T CHL00181 248 DRARMRQANR 257 (287)
T ss_pred HHHHHHHHHH
Confidence 8887665444
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=7.7e-22 Score=188.68 Aligned_cols=212 Identities=21% Similarity=0.271 Sum_probs=157.7
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCC---CCCceeecCCCCcHHHHHHHHHHHh-------CCcEEEEccch
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRP---PKGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGPQ 234 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~~~vLl~Gp~GtGKT~lakala~~l-------~~~~~~i~~s~ 234 (418)
.+++|++++++.|.+.+.. +..++.+.+.|+.+ ..+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 4689999999999997766 55667777888764 3479999999999999999998876 23799999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+...++|.+...++.+|+.+.. +||||||++.+.+.+.+ .....+.+..|+++++. ...+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----QRDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 9999999887777777777643 69999999998643211 11234566666666653 23578888887643
Q ss_pred --C---CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHH-------cCCCcHHHHHHHHHH
Q 039866 315 --D---ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARS-------TDDFNGAQLKAVCVE 381 (418)
Q Consensus 315 --~---~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~-------~~g~s~~di~~l~~~ 381 (418)
+ .++|++.+ ||+..|.||+|+.+++..|++.++.+.... .......+..+ ....+++++++++..
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 999999999999999999999999875433 11123333332 112357899999988
Q ss_pred HHHHHHHh
Q 039866 382 AGMLALRR 389 (418)
Q Consensus 382 A~~~A~~~ 389 (418)
|......+
T Consensus 249 ~~~~~~~r 256 (284)
T TIGR02880 249 ARLRQANR 256 (284)
T ss_pred HHHHHHHH
Confidence 87666544
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.3e-22 Score=192.06 Aligned_cols=209 Identities=25% Similarity=0.294 Sum_probs=164.5
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
+.+|+.++-..+.++.|.+-+..++...+.|.+.|.+-.+|.|||||||||||+++.|+|+.++..++-++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 478999999999999999999999999999999999999999999999999999999999999999988887655321
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCC--CCH--HHHHHHHHHHHhhcCCCCCC--CeEEEEEeCCC
Q 039866 241 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS--GDR--EVQRTMLELLNQLDGFSSDD--RIKVIAATNRA 314 (418)
Q Consensus 241 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~--~~~--~~~~~l~~ll~~~~~~~~~~--~vivI~ttn~~ 314 (418)
..++.++...... +||+|.+||+-...+...... +.. ...-+|.-||+.+++..+.. .-|||+|||.+
T Consensus 275 ----~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ----SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ----HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2266665555443 799999999986543222111 111 12346778999999987765 78899999999
Q ss_pred CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCC--CcHHHHHHHH
Q 039866 315 DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDD--FNGAQLKAVC 379 (418)
Q Consensus 315 ~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g--~s~~di~~l~ 379 (418)
+.|||||+||||+|.+|+++.-+......++..++..-. +..-+..+.....+ .||+++...+
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 999999999999999999999999999999998886422 23334455554443 4888876543
No 42
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.7e-22 Score=184.59 Aligned_cols=241 Identities=22% Similarity=0.291 Sum_probs=182.6
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCC-----CCCceeecCCCCcHHHHHHHHHHHh---------CCcEE
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRP-----PKGVLLYGPPGTGKTLMARACAAQT---------NATFL 228 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-----~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~ 228 (418)
.|+.++=-.+.++.+..++...+. |.+.+..+ .+-+|++||||||||+|||++|+.+ ...++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~----fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALL----FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHH----HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 466677667788888887765543 33433332 3459999999999999999999987 35689
Q ss_pred EEccchhhhhhhcchHHHHHHHHHHHHhC-----CCeEEEEcCCCcccccCC-CCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 039866 229 KLAGPQLVQMFIGDGAKLVRDAFQLAKEK-----SPCIIFIDEIDAIGTKRF-DSEVSGDREVQRTMLELLNQLDGFSSD 302 (418)
Q Consensus 229 ~i~~s~l~~~~~g~~~~~~~~~~~~a~~~-----~~~vl~iDEid~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~~~ 302 (418)
.+|+..++++|++++.+.+..+|..+... .-..++|||++.++..|. .+....+.+..+....+|.+++.+...
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999877542 224667999999988773 334445667778889999999999999
Q ss_pred CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCC-----CC-------------CCCHHHHH
Q 039866 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTV-----HP-------------DVNFEELA 364 (418)
Q Consensus 303 ~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-----~~-------------~~~~~~la 364 (418)
.++++++|+|..+.+|.+|.. |-|.+.++.+|+...+++|++.++.++-- .. +.....++
T Consensus 296 ~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~ 373 (423)
T KOG0744|consen 296 PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI 373 (423)
T ss_pred CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH
Confidence 999999999999999999998 99999999999999999999987654211 00 11122223
Q ss_pred HH-cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 365 RS-TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 365 ~~-~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
.. +.|.||+.|+.+=-.|.. ..-...+|+.++|..|+...-.+..
T Consensus 374 ~~~~~gLSGRtlrkLP~Laha--~y~~~~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 374 ELSTVGLSGRTLRKLPLLAHA--EYFRTFTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred HHhhcCCccchHhhhhHHHHH--hccCCCccChHHHHHHHHHHHHHHh
Confidence 33 479999999887644433 3334578999999999877665443
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=6.4e-21 Score=180.71 Aligned_cols=212 Identities=20% Similarity=0.258 Sum_probs=150.0
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCC---CCCceeecCCCCcHHHHHHHHHHHh-------CCcEEEEccc
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRP---PKGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGP 233 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~~~vLl~Gp~GtGKT~lakala~~l-------~~~~~~i~~s 233 (418)
+++++|++++++.|.+.+...... ......|+.+ +.+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999987665443 2333455543 3468999999999999999999874 3478899999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
++.+.++|+....+..+|..+. ++||||||+|.|.... ......+. +..++..++.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~---i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEA---IDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHH---HHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999998888888887764 4699999999996321 00111233 33444444432 345666766654
Q ss_pred CC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHH---------cCCCcHHHHHHH
Q 039866 314 AD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARS---------TDDFNGAQLKAV 378 (418)
Q Consensus 314 ~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~---------~~g~s~~di~~l 378 (418)
.+ .++|++.+ ||+..+.||.|+.+++.+|++.++...... ++.....++.. ....+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 47899998 999999999999999999999998765443 12223333221 112457889999
Q ss_pred HHHHHHHHHHh
Q 039866 379 CVEAGMLALRR 389 (418)
Q Consensus 379 ~~~A~~~A~~~ 389 (418)
+..|......+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 98887766544
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=2.9e-21 Score=173.90 Aligned_cols=195 Identities=25% Similarity=0.338 Sum_probs=133.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
..+.+|++++||++.+..+.-.+...... -.+..++|||||||+|||+||+.+|++++.+|...+++.+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 45678999999999999987766543222 124457999999999999999999999999999888764321
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc-----CCCCC--------CCe
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD-----GFSSD--------DRI 305 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~--------~~v 305 (418)
.+.+..++.... ...||||||||++ +..++..|+..++... +.... .++
T Consensus 89 -----~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 -----AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -----HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 122223333333 3469999999999 7788999999998532 11111 257
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAG 383 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~ 383 (418)
.+|++|++...+.++|+. ||.....+..++.++...|++.....+.+. .+.....+|.++.| +|+-...+++.+.
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 799999999999999998 999989999999999999999888777665 33456788888887 7887777776653
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=3.5e-21 Score=162.67 Aligned_cols=130 Identities=46% Similarity=0.739 Sum_probs=108.4
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCC-CeEEEEcCCCcccccCCCCCCC
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVS 280 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~ 280 (418)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.++....+..+|..+.... |+||||||+|.+.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 689999999999999999999999999999999998888999999999999998887 9999999999998776222
Q ss_pred CCHHHHHHHHHHHHhhcCCCCC-CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCC
Q 039866 281 GDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 281 ~~~~~~~~l~~ll~~~~~~~~~-~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~ 335 (418)
........+..++..++..... .+++||+|||.++.+++++++ +||+..+++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2333344445555555554443 579999999999999999997 79999999874
No 46
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.2e-21 Score=183.03 Aligned_cols=232 Identities=24% Similarity=0.399 Sum_probs=160.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.+...|++||-.....+.|......-- +. +..-.|-+++|||||||||||++|+-+|...|..+-.+.+.+....
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa-NT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA-NT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc-cc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 345568899888777777766443221 11 1111355789999999999999999999999998887777665321
Q ss_pred hhcchHHHHHHHHHHHHhCCC-eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 239 FIGDGAKLVRDAFQLAKEKSP-CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~-~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
-.+.-..++.+|+.+..... -+|||||+|.+.-.|..... +......|+.+|-. .+ +...+++++.+||+|..|
T Consensus 424 -G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym--SEaqRsaLNAlLfR-TG-dqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 424 -GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFR-TG-DQSRDIVLVLATNRPGDL 498 (630)
T ss_pred -chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh--cHHHHHHHHHHHHH-hc-ccccceEEEeccCCccch
Confidence 12344568899999986554 57889999998766633221 22233445555432 11 223578899999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCC---------------------------CCHHHHHHHcCCC
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD---------------------------VNFEELARSTDDF 370 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---------------------------~~~~~la~~~~g~ 370 (418)
|.++-. ||+.+++||+|..++|..++..++.++-...+ .-....|..++||
T Consensus 499 DsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 499 DSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred hHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999988 99999999999999999999988865432210 0145677899999
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
||++|..|+.-....+.-.....++..-|++.
T Consensus 577 SGREiakLva~vQAavYgsedcvLd~~lf~e~ 608 (630)
T KOG0742|consen 577 SGREIAKLVASVQAAVYGSEDCVLDEALFDER 608 (630)
T ss_pred cHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 99999999865433333333334444444443
No 47
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.9e-20 Score=189.23 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=177.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 279 (418)
..+||+|+||||||++++++|.+++.+++.++|.++.....+..+..+...|..++...|+||||-++|.++.++.+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg--- 508 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG--- 508 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---
Confidence 35999999999999999999999999999999999999888888999999999999999999999999999844422
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC
Q 039866 280 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN 359 (418)
Q Consensus 280 ~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~ 359 (418)
..+..++..+..++..=+...+...++||++++..+.+++.+++ -|...|.++.|+.++|.+|++.++....++.++.
T Consensus 509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~ 586 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN 586 (953)
T ss_pred chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHH
Confidence 23444555555555411222355689999999999999999998 7888999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---C-----------------CCCccHHHHHHHHHHHHHhhhhcc
Q 039866 360 FEELARSTDDFNGAQLKAVCVEAGMLALRR---D-----------------ATEVNHEDFNEGIIQVQAKKKASL 414 (418)
Q Consensus 360 ~~~la~~~~g~s~~di~~l~~~A~~~A~~~---~-----------------~~~It~~d~~~Al~~~~~~~~~~~ 414 (418)
...++.++.||+.+++..++..+-..+..+ . ...++++||.+|+.+++..++..+
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999887763333322 1 257999999999999999887665
No 48
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.85 E-value=9.3e-21 Score=205.41 Aligned_cols=194 Identities=18% Similarity=0.275 Sum_probs=142.5
Q ss_pred ceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCC----CCCCCceeecCCCCcH
Q 039866 137 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGV----RPPKGVLLYGPPGTGK 212 (418)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~Gp~GtGK 212 (418)
+.-|+.+|.......+...+.......+..|+|++.+++.+...+... +.|+ +|...+||+|||||||
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GK 611 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGK 611 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCH
Confidence 344777887654444444455556667889999999999999988533 2222 2234699999999999
Q ss_pred HHHHHHHHHHh---CCcEEEEccchhhhh-----hhcchHHH-----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC
Q 039866 213 TLMARACAAQT---NATFLKLAGPQLVQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279 (418)
Q Consensus 213 T~lakala~~l---~~~~~~i~~s~l~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 279 (418)
|++|+++|+.+ +.+++.++|+++... .+|..+++ -..+.+..+..+++||+|||++.+
T Consensus 612 T~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka--------- 682 (857)
T PRK10865 612 TELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA--------- 682 (857)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC---------
Confidence 99999999987 467999999887543 23322211 123455566677799999999998
Q ss_pred CCCHHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCCC-------------------------CCCChhhhCCCCce
Q 039866 280 SGDREVQRTMLELLNQLDGFSS------DDRIKVIAATNRA-------------------------DILDPALMRSGRLD 328 (418)
Q Consensus 280 ~~~~~~~~~l~~ll~~~~~~~~------~~~vivI~ttn~~-------------------------~~l~~~l~r~~Rf~ 328 (418)
++.+++.|+++++...-.++ -.+++||+|||.. ..+.|+|++ |++
T Consensus 683 --~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld 758 (857)
T PRK10865 683 --HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RID 758 (857)
T ss_pred --CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCC
Confidence 78899999999986532222 2367799999962 246789998 999
Q ss_pred eEEEcCCCCHHHHHHHHHHHhhc
Q 039866 329 RKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 329 ~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
.++.|.+++.+....|++.++..
T Consensus 759 ~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 759 EVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eeEecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988877654
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.85 E-value=1.4e-19 Score=177.12 Aligned_cols=219 Identities=21% Similarity=0.237 Sum_probs=163.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
..+.+|++++|+++.++.+...+...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 34568999999999999998877432111 145678999999999999999999999998887776653321
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC-------CC------CCCCe
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-------FS------SDDRI 305 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-------~~------~~~~v 305 (418)
...+..++... ..++||||||||.+. ...++.+..+++.... .. .-.++
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~-----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcc-----------hHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 12233333333 345799999999983 3445556666654210 00 11246
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~ 384 (418)
.+|++||++..+++++++ ||...+.|++|+.+++.+|++.......+. ++.....++..+.| +++.+..++..+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 789999999999999988 998899999999999999999888765544 23346788888877 56889999998888
Q ss_pred HHHHhCCCCccHHHHHHHHHHHH
Q 039866 385 LALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
.|...+...|+.+++..++..+.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDMLG 251 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhC
Confidence 88777777899999999997653
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=1.4e-19 Score=175.43 Aligned_cols=214 Identities=21% Similarity=0.222 Sum_probs=157.1
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcc
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD 242 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~ 242 (418)
+|++++|+++.++.+..++...... -.++.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5889999999999998877433221 134567999999999999999999999988877766543221
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC-------------CCCCCeEEEE
Q 039866 243 GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-------------SSDDRIKVIA 309 (418)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-------------~~~~~vivI~ 309 (418)
...+...+... ..+.+|||||+|.+ +...+..+..+++..... .....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 34579999999998 334556666666542210 0112477899
Q ss_pred EeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 039866 310 ATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388 (418)
Q Consensus 310 ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 388 (418)
+||.+..+++++++ ||...+.|++|+.+++.++++..+...... ++..+..++..+.|. ++.+..++..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHH
Confidence 99999999999998 998889999999999999999887754443 233466788888774 57888899888777766
Q ss_pred hCCCCccHHHHHHHHHHH
Q 039866 389 RDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 389 ~~~~~It~~d~~~Al~~~ 406 (418)
.+...|+.+++..++..+
T Consensus 212 ~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 212 RGQKIINRDIALKALEML 229 (305)
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 666789999999999874
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.85 E-value=7.5e-21 Score=205.08 Aligned_cols=223 Identities=22% Similarity=0.357 Sum_probs=150.7
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh-------
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV------- 236 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~------- 236 (418)
-++++|++.+++.|.+++...... +-..+.+++|+||||||||++|+++|+.++.++++++++.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRG 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcC
Confidence 346899999999999977543221 112233699999999999999999999999999999875432
Q ss_pred --hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh--cCCC--------CCCC
Q 039866 237 --QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL--DGFS--------SDDR 304 (418)
Q Consensus 237 --~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~--------~~~~ 304 (418)
..|+|...+.+.+.+..+....| ||||||||.+.+.. +.+..+.|+++|+.. ..+. ..++
T Consensus 392 ~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 392 HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 24667777777777777765555 89999999997532 112346677777531 1111 1247
Q ss_pred eEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh-----cCCCC------CCCCHHHHHHHc-CCCcH
Q 039866 305 IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR-----KMTVH------PDVNFEELARST-DDFNG 372 (418)
Q Consensus 305 vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~------~~~~~~~la~~~-~g~s~ 372 (418)
+++|+|||..+.+++++++ ||. +|.|+.|+.+++..|++.++. ...+. .+..+..++... ..+..
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 8999999999999999999 995 889999999999999987762 11221 112344444422 22223
Q ss_pred H----HHHHHHHHHHHHHHHhCC--------CCccHHHHHHHHH
Q 039866 373 A----QLKAVCVEAGMLALRRDA--------TEVNHEDFNEGII 404 (418)
Q Consensus 373 ~----di~~l~~~A~~~A~~~~~--------~~It~~d~~~Al~ 404 (418)
+ .+..+|+.++......+. ..|+.+++..-+.
T Consensus 541 R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 541 RNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4 455566665443332221 3677777766553
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=9.1e-20 Score=167.21 Aligned_cols=220 Identities=20% Similarity=0.268 Sum_probs=175.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
..+..|++.+||+++++.+.-++..+..+. ....++|||||||.|||+||..+|++++..+-..+++.+.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 346789999999999999998887664442 3556899999999999999999999999998888777552
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc-----CCCCC--------CCe
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD-----GFSSD--------DRI 305 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~--------~~v 305 (418)
.++.+-.++.....+ .||||||||++ ++.+.+.|+-.++... +..+. .++
T Consensus 90 ----K~gDlaaiLt~Le~~--DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ----KPGDLAAILTNLEEG--DVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ----ChhhHHHHHhcCCcC--CeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 223333444444443 69999999999 5667788888876421 11111 257
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~ 384 (418)
-+|++|.+...+...|+. ||.....+..++.++..+|+.+....+.+. .+.....+|.++.| +|+=...++++..-
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRD 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRD 229 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 799999999999999998 999999999999999999999988777666 33446788888887 78888899999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHH
Q 039866 385 LALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
.|.-++...|+.+-..+|+..+.-
T Consensus 230 fa~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 230 FAQVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHHHhcCCcccHHHHHHHHHHhCc
Confidence 999889999999988888887654
No 53
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-19 Score=183.13 Aligned_cols=235 Identities=22% Similarity=0.242 Sum_probs=181.1
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhhhh
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFI 240 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~~~ 240 (418)
.+++-....++...+....| +..+.++||+||+|+|||.|+++++++. -+++..++|+.+...-.
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45555555555555543333 2234579999999999999999999987 46788999999988777
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh-cCC-CCCCCeEEEEEeCCCCCCC
Q 039866 241 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL-DGF-SSDDRIKVIAATNRADILD 318 (418)
Q Consensus 241 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~-~~~~~vivI~ttn~~~~l~ 318 (418)
......+..+|..+.++.|+||+||++|.+++... ...+.+....+.+..+++++ ..+ ..+..+.+|++.+....++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 77888899999999999999999999999987322 22222333444444455332 222 2234578999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh----CCCC
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR----DATE 393 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~----~~~~ 393 (418)
|.|.+|++|..++.+|.|+..+|.+|++..+.+.... ...+++.++..|+||...|+..++.+|...|... +...
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999998876533 3345666999999999999999999999998733 2337
Q ss_pred ccHHHHHHHHHHHHHhhh
Q 039866 394 VNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 394 It~~d~~~Al~~~~~~~~ 411 (418)
+|.++|.++++...+...
T Consensus 636 ltke~f~ksL~~F~P~aL 653 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVPLAL 653 (952)
T ss_pred chHHHHHHHHHhcChHHh
Confidence 899999999988776443
No 54
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.3e-20 Score=185.65 Aligned_cols=224 Identities=22% Similarity=0.367 Sum_probs=158.3
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh------
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV------ 236 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~------ 236 (418)
.-.+-.|+++++++|.+++.-....+ . ....-++|+||||+|||+|++++|+.+++.|++++...+.
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~------~-~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTK------K-LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhc------c-CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 33567799999999999885332221 1 1223488999999999999999999999999999875443
Q ss_pred ---hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--C--------CCCC
Q 039866 237 ---QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--F--------SSDD 303 (418)
Q Consensus 237 ---~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~--------~~~~ 303 (418)
..|+|..++.+-+....+...+| |++|||||+++..- .|+| ...|+++|+-=.+ | -.-+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDP--aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDP--ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCCh--HHHHHhhcCHhhcCchhhccccCccchh
Confidence 23899999988888888887777 89999999996442 2333 3577777752111 1 1124
Q ss_pred CeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh-----cCCCCC------CCCHHHHHHHcCCCcH
Q 039866 304 RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR-----KMTVHP------DVNFEELARSTDDFNG 372 (418)
Q Consensus 304 ~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~~------~~~~~~la~~~~g~s~ 372 (418)
+|++|+|+|..+.++.+|+. |+ .+|.++.++.++..+|.+.|+- ...+.. +..+..+.+.+..-+|
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 89999999999999999999 99 5999999999999999988862 222221 1123333332221122
Q ss_pred -----HHHHHHHHHHHHHHHHhCCC---CccHHHHHHHHH
Q 039866 373 -----AQLKAVCVEAGMLALRRDAT---EVNHEDFNEGII 404 (418)
Q Consensus 373 -----~di~~l~~~A~~~A~~~~~~---~It~~d~~~Al~ 404 (418)
++|..+|+.++..-+..... .|+..++.+-+.
T Consensus 543 VR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 543 VRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 57888888877765554332 466666665543
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=1.2e-19 Score=187.41 Aligned_cols=220 Identities=22% Similarity=0.324 Sum_probs=157.5
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcE
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATF 227 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~ 227 (418)
...+.+|++++|++..++.++..+.. +.+.++||+||||||||++|+++++.+ +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34567899999999999999865421 235689999999999999999998752 3689
Q ss_pred EEEccchh-------hhhhhcchHH-HHH--HH----------HHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHH
Q 039866 228 LKLAGPQL-------VQMFIGDGAK-LVR--DA----------FQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQR 287 (418)
Q Consensus 228 ~~i~~s~l-------~~~~~g~~~~-~~~--~~----------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 287 (418)
+.++|... ....+|.... ... .. .........++||||||+.| ++..|+
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----------~~~~q~ 193 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----------HPVQMN 193 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----------CHHHHH
Confidence 99998631 1111121000 000 00 00112234479999999999 778899
Q ss_pred HHHHHHHhhcCC-----------------------CCCCCeEEE-EEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHH
Q 039866 288 TMLELLNQLDGF-----------------------SSDDRIKVI-AATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343 (418)
Q Consensus 288 ~l~~ll~~~~~~-----------------------~~~~~vivI-~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~ 343 (418)
.|+.+++....+ ..+.++.+| +||+.++.++|++++ |+ ..+.|++++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHH
Confidence 999988753110 011234444 566789999999998 88 478899999999999
Q ss_pred HHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 344 ILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 344 il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
|++..+++..+. ++..+..++.++ ++++++.++++.|...|..+++..|+.+|+.+++..-
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 999999876644 223355555544 4789999999999999988888899999999998643
No 56
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-20 Score=188.08 Aligned_cols=170 Identities=27% Similarity=0.429 Sum_probs=133.0
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh-----
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV----- 236 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~----- 236 (418)
..-++-.|.++++++|.+++.-...+ |-..+.-+.|+||||+|||+++++||+.+++.|++++...+.
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhh
Confidence 33457789999999999988543222 112233488999999999999999999999999999875443
Q ss_pred ----hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh----------hcCCCCC
Q 039866 237 ----QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ----------LDGFSSD 302 (418)
Q Consensus 237 ----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~----------~~~~~~~ 302 (418)
..|+|..++.+-+.+..+...+| +++|||||+++..- .|++ ...|+++|+- ++-.-.-
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-----qGDP--asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-----QGDP--ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-----CCCh--HHHHHHhcChhhccchhhhccccccch
Confidence 23899999998888888888877 88999999997322 2333 3577777752 1111123
Q ss_pred CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHh
Q 039866 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHS 349 (418)
Q Consensus 303 ~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~ 349 (418)
++|++|||+|..+.++++|+. |+ .+|.++-+..++..+|.+.++
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 589999999999999999999 99 599999999999999998876
No 57
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.82 E-value=6.2e-20 Score=199.66 Aligned_cols=228 Identities=18% Similarity=0.260 Sum_probs=157.9
Q ss_pred eecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCC----CCCCCceeecCCCCcHHHH
Q 039866 140 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGV----RPPKGVLLYGPPGTGKTLM 215 (418)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~Gp~GtGKT~l 215 (418)
|+.+|.......+...+..........|+|++.+++.+...+... +.|+ +|...+||+||||||||++
T Consensus 540 ~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 540 WTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred hcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHH
Confidence 555665443333333333334445678999999999999988543 2222 2445699999999999999
Q ss_pred HHHHHHHh---CCcEEEEccchhhhh-----hhcchHHH-----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCC
Q 039866 216 ARACAAQT---NATFLKLAGPQLVQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGD 282 (418)
Q Consensus 216 akala~~l---~~~~~~i~~s~l~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~ 282 (418)
|+++|..+ +.++++++|+++... ++|...++ ...+.+.++..+++||+||||+++ +
T Consensus 612 A~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~ 680 (852)
T TIGR03346 612 AKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------H 680 (852)
T ss_pred HHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------C
Confidence 99999987 568999999887542 23322221 124566677788899999999998 8
Q ss_pred HHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCCCC-------------------------CCChhhhCCCCceeEE
Q 039866 283 REVQRTMLELLNQLDGFSS------DDRIKVIAATNRAD-------------------------ILDPALMRSGRLDRKI 331 (418)
Q Consensus 283 ~~~~~~l~~ll~~~~~~~~------~~~vivI~ttn~~~-------------------------~l~~~l~r~~Rf~~~i 331 (418)
+++++.|+++|+...-.+. -.+++||+|||... .|.|.|+. |++.++
T Consensus 681 ~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Ii 758 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIV 758 (852)
T ss_pred HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEE
Confidence 8999999999987543222 24688999999721 36688888 999999
Q ss_pred EcCCCCHHHHHHHHHHHhhc-------CCCC---CCCCHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH
Q 039866 332 ELPHPSEEARARILQIHSRK-------MTVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGMLALR 388 (418)
Q Consensus 332 ~~~~p~~~~r~~il~~~~~~-------~~~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~~A~~ 388 (418)
.|.+++.+...+|+...+.. ..+. ++.....|+.... .+..+.|++++.......+.
T Consensus 759 vF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 759 VFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 99999999999988766542 1111 1222445555422 45567888888776655543
No 58
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.81 E-value=1.1e-18 Score=188.88 Aligned_cols=226 Identities=15% Similarity=0.245 Sum_probs=157.1
Q ss_pred eeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCC----CCCCceeecCCCCcHHH
Q 039866 139 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTL 214 (418)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~ 214 (418)
-|+.+|.......+...+.......-..|+||+.+++.+.+.+... +.|+. |...+||+||||||||+
T Consensus 540 ~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~ 611 (852)
T TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTE 611 (852)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHH
Confidence 3667776544333333333444455678999999999999998543 22222 22348999999999999
Q ss_pred HHHHHHHHh---CCcEEEEccchhhhh-----hhcchHHHH-----HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCC
Q 039866 215 MARACAAQT---NATFLKLAGPQLVQM-----FIGDGAKLV-----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSG 281 (418)
Q Consensus 215 lakala~~l---~~~~~~i~~s~l~~~-----~~g~~~~~~-----~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 281 (418)
+|+++|..+ ...++.++|+++... ++|...+++ ..+.+.++.++++||+||||+++
T Consensus 612 lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka----------- 680 (852)
T TIGR03345 612 TALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA----------- 680 (852)
T ss_pred HHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------
Confidence 999999988 468999999988543 233322221 23567778889999999999988
Q ss_pred CHHHHHHHHHHHHhhcCCCCC------CCeEEEEEeCCC-----------------------------CCCChhhhCCCC
Q 039866 282 DREVQRTMLELLNQLDGFSSD------DRIKVIAATNRA-----------------------------DILDPALMRSGR 326 (418)
Q Consensus 282 ~~~~~~~l~~ll~~~~~~~~~------~~vivI~ttn~~-----------------------------~~l~~~l~r~~R 326 (418)
++++++.|+++++...-.++. .+++||+|||.. ..|.|+|++ |
T Consensus 681 ~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--R 758 (852)
T TIGR03345 681 HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--R 758 (852)
T ss_pred CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--c
Confidence 889999999999875433322 478899999851 137789998 9
Q ss_pred ceeEEEcCCCCHHHHHHHHHHHhhcC--------CCC---CCCCHHHHHHHcCC--CcHHHHHHHHHHHHHHH
Q 039866 327 LDRKIELPHPSEEARARILQIHSRKM--------TVH---PDVNFEELARSTDD--FNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 327 f~~~i~~~~p~~~~r~~il~~~~~~~--------~~~---~~~~~~~la~~~~g--~s~~di~~l~~~A~~~A 386 (418)
++ +|.|.+++.++...|+...+..+ .+. .+.....|+....+ +-++.++.+++.-...+
T Consensus 759 i~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 759 MT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred ee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 97 89999999999999988766432 221 22234556665433 44677777776644443
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.81 E-value=5.5e-19 Score=169.36 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=143.0
Q ss_pred CCCCCCccccCcHHHHH---HHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQ---ELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..+.++++++||++.+- -|...+.. ....+++||||||||||++|+.||...+..|..++....
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 34678899999998773 34444421 244579999999999999999999999999999987432
Q ss_pred hhhhhcchHHHHHHHHHHHHhCC----CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~----~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
+-+.++.+++.++... ..|||+||||++ +...|..|+-.++. +.+++|++|
T Consensus 85 -------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE~-------G~iilIGAT 139 (436)
T COG2256 85 -------GVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVEN-------GTIILIGAT 139 (436)
T ss_pred -------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------ChhhhhhhhhhhcC-------CeEEEEecc
Confidence 3455777888775432 479999999999 55567777777663 567788765
Q ss_pred --CCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh--cCCCC------CCCCHHHHHHHcCCCcHHHHHHHHHH
Q 039866 312 --NRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR--KMTVH------PDVNFEELARSTDDFNGAQLKAVCVE 381 (418)
Q Consensus 312 --n~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~--~~~~~------~~~~~~~la~~~~g~s~~di~~l~~~ 381 (418)
|+.-.+++++++ |. .++.+.+++.++...++++-+. ...+. .+.....++..+.| |.+.+++.
T Consensus 140 TENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 140 TENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred CCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 445589999999 77 5899999999999999988332 22332 12235556666655 44444443
Q ss_pred HHHHHHHhC-CCCccHHHHHHHHHHHHHhhh
Q 039866 382 AGMLALRRD-ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 382 A~~~A~~~~-~~~It~~d~~~Al~~~~~~~~ 411 (418)
.-+.+.... ...++.+++.+.+.+-....+
T Consensus 213 LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~D 243 (436)
T COG2256 213 LELAALSAEPDEVLILELLEEILQRRSARFD 243 (436)
T ss_pred HHHHHHhcCCCcccCHHHHHHHHhhhhhccC
Confidence 333332221 123447777777777665433
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.81 E-value=3.1e-19 Score=189.76 Aligned_cols=190 Identities=19% Similarity=0.290 Sum_probs=138.6
Q ss_pred eecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCC----CCCCCceeecCCCCcHHHH
Q 039866 140 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGV----RPPKGVLLYGPPGTGKTLM 215 (418)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~Gp~GtGKT~l 215 (418)
|+.+|...........+.......-..|+||+++++.|...+... +.|+ +|..++||+||||||||++
T Consensus 433 ~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~l 504 (758)
T PRK11034 433 IARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_pred HhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHH
Confidence 445554333222222222333334567999999999999988533 2222 3445699999999999999
Q ss_pred HHHHHHHhCCcEEEEccchhhh-----hhhcchHHHH-----HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHH
Q 039866 216 ARACAAQTNATFLKLAGPQLVQ-----MFIGDGAKLV-----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREV 285 (418)
Q Consensus 216 akala~~l~~~~~~i~~s~l~~-----~~~g~~~~~~-----~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~ 285 (418)
|+++|..++.+++.++|+++.. .++|...+++ ..+.+.++.++++||||||||++ ++++
T Consensus 505 Ak~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v 573 (758)
T PRK11034 505 TVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDV 573 (758)
T ss_pred HHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHH
Confidence 9999999999999999998743 3445432222 23556667778899999999999 7889
Q ss_pred HHHHHHHHHhhcCCCC------CCCeEEEEEeCCC-------------------------CCCChhhhCCCCceeEEEcC
Q 039866 286 QRTMLELLNQLDGFSS------DDRIKVIAATNRA-------------------------DILDPALMRSGRLDRKIELP 334 (418)
Q Consensus 286 ~~~l~~ll~~~~~~~~------~~~vivI~ttn~~-------------------------~~l~~~l~r~~Rf~~~i~~~ 334 (418)
++.|+++|+...-.+. -.++++|+|||.. ..+.|+|++ |++.+|.|+
T Consensus 574 ~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~ 651 (758)
T PRK11034 574 FNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_pred HHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcC
Confidence 9999999986532222 1478899999932 247799998 999999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 039866 335 HPSEEARARILQIHSR 350 (418)
Q Consensus 335 ~p~~~~r~~il~~~~~ 350 (418)
+++.++..+|+..++.
T Consensus 652 ~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 652 HLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999877654
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.6e-18 Score=186.18 Aligned_cols=223 Identities=24% Similarity=0.334 Sum_probs=166.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+-.+++++|+++.+..+.+.+.. ....+++|+||||||||++|+++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 345788999999999988876532 234589999999999999999999987 678999
Q ss_pred Eccchhh--hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 230 LAGPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 230 i~~s~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
++++.+. .+|.|+.+..++.+++.+....++||||||+|.+.+.+.. .+++.+.++.|...+. ++.+.+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~-------~g~i~~ 314 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS-------SGKLRC 314 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------CCCeEE
Confidence 9998887 4688999999999999998878899999999999865422 1223455566655543 367889
Q ss_pred EEEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCC----CC-CCCCHHHHHHHcCCCc-----H
Q 039866 308 IAATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VH-PDVNFEELARSTDDFN-----G 372 (418)
Q Consensus 308 I~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~la~~~~g~s-----~ 372 (418)
|++||..+ ..|+++.| ||. .|.++.|+.+++.+|++.....+. +. .+..+..++..+..|- |
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P 391 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLP 391 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCC
Confidence 99999643 57999999 996 799999999999999997665432 11 2333555565555443 3
Q ss_pred HHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHHH
Q 039866 373 AQLKAVCVEAGMLALRR----DATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 373 ~di~~l~~~A~~~A~~~----~~~~It~~d~~~Al~~~~ 407 (418)
.....++.+|+.....+ ....|+.+|+..++...-
T Consensus 392 ~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 392 DKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 44456677766543322 234699999999988764
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.5e-18 Score=169.73 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=144.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.++..|...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 45678999999999999998887432 234569999999999999999999998653
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++... ..+-..++.+.+.+. ...+.|++|||+|.+ +.+.++.|+
T Consensus 80 sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~NALL 142 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSFNALL 142 (484)
T ss_pred HHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHHHHHH
Confidence 22222110 011223344444333 334679999999999 556666666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..+++ +..++++|++|+.+..+.+++++ |+ ..+.|.+++.++..+.++..+....+. .+..+..|+..+.|
T Consensus 143 KtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 143 KTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66643 34688899999999999999999 88 578999999999989898888765544 33456778877776
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.|+..+++..+...+ ...||.+++.+.+
T Consensus 215 -d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 215 -SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred -hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 6788888887665432 2347777765543
No 63
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.9e-18 Score=182.53 Aligned_cols=286 Identities=14% Similarity=0.170 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCch
Q 039866 28 SRLLDNEIRVLKEELQRTNLELD--------------------SYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDE 87 (418)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (418)
+..++.....++.++..|+..|+ .+...++..++..+.++..+...++..- +...++..
T Consensus 421 L~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~ 499 (898)
T KOG1051|consen 421 LQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPN 499 (898)
T ss_pred HHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchh-hhcccCCC
Confidence 33333444445556666666666 5667777888888888876666665554 55555667
Q ss_pred hhhcccccccccccCCceEEEeecccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccc
Q 039866 88 AEEDGANIDLDSQRKGKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDI 167 (418)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 167 (418)
++..++.+.+..++..... ++. .....+.+.-. .+..|+.+|.......+...+.......-..|
T Consensus 500 d~~~~~~l~~~~~p~~~~~--~~~---------~~~~~~~~i~~----~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V 564 (898)
T KOG1051|consen 500 DYTRETDLRYGRIPDELSE--KSN---------DNQGGESDISE----VVSRWTGIPVDRLAEAEAERLKKLEERLHERV 564 (898)
T ss_pred Ccchhhhccccccchhhhh--hcc---------cccCCccchhh----hhhhhcCCchhhhhhhHHHHHHHHHHHHHhhc
Confidence 7777777777777722221 110 00001212222 23336666665554433344444444556789
Q ss_pred cCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh-------
Q 039866 168 GGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ------- 237 (418)
Q Consensus 168 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~------- 237 (418)
+||++++..|.++|...... ..+. .|...+||.||.|+|||.+|+++|..+ .-.|++++|++|.+
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~g---l~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAG---LKDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred cchHHHHHHHHHHHHhhhcc---cCCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCC
Confidence 99999999999999654221 1111 356679999999999999999999987 56899999997543
Q ss_pred --hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC------CeEEEE
Q 039866 238 --MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD------RIKVIA 309 (418)
Q Consensus 238 --~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~------~vivI~ 309 (418)
.|+|..+.. .+++.+++++++||+|||||.. |+.+++.|+++++.+.-.++.+ +++||+
T Consensus 640 p~gyvG~e~gg--~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IM 706 (898)
T KOG1051|consen 640 PPGYVGKEEGG--QLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIM 706 (898)
T ss_pred CcccccchhHH--HHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEE
Confidence 245555544 7899999999999999999998 8999999999999877666654 799999
Q ss_pred EeCCC----------------------------------------CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHh
Q 039866 310 ATNRA----------------------------------------DILDPALMRSGRLDRKIELPHPSEEARARILQIHS 349 (418)
Q Consensus 310 ttn~~----------------------------------------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~ 349 (418)
|+|.- ..+.|.+++ |++..+.|.+.+.++..++....+
T Consensus 707 Tsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~n--rid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 707 TSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLN--RIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred ecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhc--ccceeeeecccchhhHhhhhhhHH
Confidence 98851 223455655 777777777777776666665544
No 64
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.78 E-value=7.4e-18 Score=179.28 Aligned_cols=221 Identities=26% Similarity=0.352 Sum_probs=162.8
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 230 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i 230 (418)
.-.++.++|.+..+..+.+.+.. ....++||+||||||||++|+++|... ++.++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 44678899999999999986643 234578999999999999999999864 4566666
Q ss_pred ccchhh--hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 039866 231 AGPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 308 (418)
Q Consensus 231 ~~s~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI 308 (418)
+.+.+. .+|.|+.+..++.++..+....++||||||||.+++.+.. ..+..+..+.|..++. .+.+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeEEE
Confidence 666655 4577888889999999888888899999999999866422 1223445555555554 3678999
Q ss_pred EEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHH-----HHHH-----cCCCcHH
Q 039866 309 AATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEE-----LARS-----TDDFNGA 373 (418)
Q Consensus 309 ~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~-----la~~-----~~g~s~~ 373 (418)
++||.++ ..|++|.| ||. .|.++.|+.+++..|++.....+....++.+.. .+.. ...+.|.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9999865 57999999 995 899999999999999998877665554443322 2222 2234566
Q ss_pred HHHHHHHHHHHHHH----HhCCCCccHHHHHHHHHHH
Q 039866 374 QLKAVCVEAGMLAL----RRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 374 di~~l~~~A~~~A~----~~~~~~It~~d~~~Al~~~ 406 (418)
....++.+|+.... ......|+.+|+.+.+...
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 88888888876442 2234468888888877554
No 65
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=3e-18 Score=183.98 Aligned_cols=206 Identities=20% Similarity=0.322 Sum_probs=148.8
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCC----CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
....-..|+||+.+++.+...+.. .+.|+. |..++||+||||||||++|+++|..++.++++++|+++
T Consensus 449 ~~~l~~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 449 EKNLKAKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred HHHHhcceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 334456799999999999988743 233432 33458999999999999999999999999999999987
Q ss_pred hhh-----hhcchHHH-----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC----
Q 039866 236 VQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS---- 301 (418)
Q Consensus 236 ~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---- 301 (418)
... ++|...++ .+.+.+.++..+++||+|||||++ ++++++.|+++++...-.+.
T Consensus 521 ~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 521 MEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred hhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcc
Confidence 542 33332221 224667777888899999999998 78999999999987532222
Q ss_pred --CCCeEEEEEeCCC-------------------------CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC--
Q 039866 302 --DDRIKVIAATNRA-------------------------DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM-- 352 (418)
Q Consensus 302 --~~~vivI~ttn~~-------------------------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~-- 352 (418)
-.++++|+|||.. ..+.|.|+. ||+.++.|.+++.++..+|++..+..+
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 2368899999863 136788988 999999999999999999998877532
Q ss_pred -----CCC---CCCCHHHHHHH--cCCCcHHHHHHHHHHHHHHH
Q 039866 353 -----TVH---PDVNFEELARS--TDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 353 -----~~~---~~~~~~~la~~--~~g~s~~di~~l~~~A~~~A 386 (418)
.+. ++.....|+.. ...+.++.|+.+++.-...+
T Consensus 668 ~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 668 QLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 111 12234455553 23344567777766655444
No 66
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.77 E-value=3.2e-17 Score=162.91 Aligned_cols=222 Identities=21% Similarity=0.272 Sum_probs=152.0
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---------CcEEEEccch
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---------ATFLKLAGPQ 234 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---------~~~~~i~~s~ 234 (418)
.++++|.++.++.|...+...+.. ..+.+++|+||||||||++++++++.+. ..+++++|..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 357899999999999987543221 3456799999999999999999998752 5788888854
Q ss_pred hhh----------hhh--cc--------hHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 039866 235 LVQ----------MFI--GD--------GAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 293 (418)
Q Consensus 235 l~~----------~~~--g~--------~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 293 (418)
... .+. |. .......++.... ...+.||+|||+|.+... . +..+..++
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l~ 153 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQLS 153 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhHh
Confidence 322 111 11 1122334444443 344679999999999621 1 12445555
Q ss_pred HhhcC-CCCCCCeEEEEEeCCCC---CCChhhhCCCCce-eEEEcCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHHH-
Q 039866 294 NQLDG-FSSDDRIKVIAATNRAD---ILDPALMRSGRLD-RKIELPHPSEEARARILQIHSRKMTVH---PDVNFEELA- 364 (418)
Q Consensus 294 ~~~~~-~~~~~~vivI~ttn~~~---~l~~~l~r~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~la- 364 (418)
..... .....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++...... .+..+..++
T Consensus 154 ~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 154 RARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA 231 (365)
T ss_pred ccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence 43211 12235788999999876 57788877 774 679999999999999999887621111 111223333
Q ss_pred --HHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 365 --RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 365 --~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
..+.| ..+.+..+|..|...|..++...|+.+|+..|+..+..
T Consensus 232 ~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 232 LAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 33345 46677789999999999888899999999999988864
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.2e-17 Score=173.31 Aligned_cols=201 Identities=18% Similarity=0.228 Sum_probs=143.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 35678999999999999999887422 335568999999999999999999988652
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++.+. ..+-..++.+++.+.. ..+.|+||||+|.| +...++.|+
T Consensus 78 sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~NALL 140 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFNAML 140 (830)
T ss_pred HHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHHHHH
Confidence 12222110 0112234555554432 34579999999999 445566776
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..|++ ...++++|++||.++.|.+.+++ |+ ..+.|..++.++..+.++..+....+. .+..+..|+..+.|
T Consensus 141 KtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 141 KTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred HHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66664 23578899999999999999999 88 689999999999999998888765544 33446677777776
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 401 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~ 401 (418)
+.++..+++..+.... ...|+.+++..
T Consensus 213 -smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 213 -SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred -CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 5677777777666433 23455555444
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2e-17 Score=167.91 Aligned_cols=205 Identities=18% Similarity=0.246 Sum_probs=141.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC-------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA------------- 225 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~------------- 225 (418)
..+.+|++++|++++++.+...+... ..++++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 45678999999999999888876432 34557999999999999999999998864
Q ss_pred -----------cEEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 226 -----------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 226 -----------~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
.++.++.+.- .+-..++.+.+.+.. ..+.||+|||+|.+ ....++.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHHHHH
Confidence 2333333210 112334444444432 23469999999998 334455555
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..++. .++.+++|++|+.+..+++++.+ |+ ..+.|++|+.++...+++..+....+. ++..+..++..+.|
T Consensus 139 k~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 139 KTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 55543 23467777777777899999998 88 489999999999999998887654433 23346777777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
..+.+.+.+..+...+ ...||.+++..++..
T Consensus 211 -dlR~aln~Le~l~~~~----~~~It~e~V~~~l~~ 241 (472)
T PRK14962 211 -GLRDALTMLEQVWKFS----EGKITLETVHEALGL 241 (472)
T ss_pred -CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHcC
Confidence 4555555555444332 234999998887753
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2e-17 Score=169.94 Aligned_cols=203 Identities=18% Similarity=0.222 Sum_probs=145.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|..++... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 35678999999999999999988422 345678999999999999999999998652
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++.+.- ..-..++.+...+. ...+.|++|||+|.| +...++.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHHHHH
Confidence 222322210 11223444544432 234579999999999 445666666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..+++ ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....++..+....+. .+..+..++..+.|
T Consensus 140 KtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 140 KTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66664 23566788888888889899988 88 589999999999999998888765544 23446677777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.+++.+++..+... +...|+.+++...+
T Consensus 212 -dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 212 -SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 778888887766543 34568888776643
No 70
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.3e-17 Score=169.20 Aligned_cols=222 Identities=45% Similarity=0.711 Sum_probs=192.4
Q ss_pred ccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEE
Q 039866 183 LPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCII 262 (418)
Q Consensus 183 ~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl 262 (418)
.++.+++.+..+++.++.+++++||||||||.++++++.. +..+..++.++...++.|..+...+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 3567788999999999999999999999999999999999 666688899999999999999999999999999999999
Q ss_pred EEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHH
Q 039866 263 FIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARA 342 (418)
Q Consensus 263 ~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~ 342 (418)
++|++|.+.+.+......... ....+++..+++.. ...+++++.+|.+..+++++++++||+..+.++.|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~---~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVER---RVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccccchhh---HHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 999999999988662222223 33444444444444 33488889999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC------CCCccHHHHHHHHHHHHHh
Q 039866 343 RILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------ATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 343 ~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------~~~It~~d~~~Al~~~~~~ 409 (418)
+|+......+....+.+...++..+.|++++++..+|..+...+..+. ...++.+++.++++.+.++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 999999988888878899999999999999999999999999988875 3468999999999998764
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.77 E-value=1.6e-17 Score=180.49 Aligned_cols=225 Identities=17% Similarity=0.250 Sum_probs=152.8
Q ss_pred eecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCC----CCCCCceeecCCCCcHHHH
Q 039866 140 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGV----RPPKGVLLYGPPGTGKTLM 215 (418)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~Gp~GtGKT~l 215 (418)
|+.+|...........+.......-..|+||+.+++.+..++... +.|+ +|..++||+||||||||++
T Consensus 484 ~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~l 555 (821)
T CHL00095 484 WTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTEL 555 (821)
T ss_pred HHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHH
Confidence 555555433332222233333444578999999999999988432 2232 2334589999999999999
Q ss_pred HHHHHHHh---CCcEEEEccchhhh-----hhhcchHHH-----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCC
Q 039866 216 ARACAAQT---NATFLKLAGPQLVQ-----MFIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGD 282 (418)
Q Consensus 216 akala~~l---~~~~~~i~~s~l~~-----~~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~ 282 (418)
|+++|+.+ +.++++++++++.. +++|..+++ ...+.+.++.++++||+|||+|++ +
T Consensus 556 A~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~ 624 (821)
T CHL00095 556 TKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------H 624 (821)
T ss_pred HHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------C
Confidence 99999987 46899999988743 233332222 134677888888899999999998 8
Q ss_pred HHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCCCC-------------------------------------CCCh
Q 039866 283 REVQRTMLELLNQLDGFSS------DDRIKVIAATNRAD-------------------------------------ILDP 319 (418)
Q Consensus 283 ~~~~~~l~~ll~~~~~~~~------~~~vivI~ttn~~~-------------------------------------~l~~ 319 (418)
+++++.|+++++.+.-.++ -.++++|+|||... .|.|
T Consensus 625 ~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 704 (821)
T CHL00095 625 PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRP 704 (821)
T ss_pred HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCH
Confidence 8999999999987543222 24789999998421 1457
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC-------CCC---CCCCHHHHHHHc--CCCcHHHHHHHHHHHHHH
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKM-------TVH---PDVNFEELARST--DDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~--~g~s~~di~~l~~~A~~~ 385 (418)
+|++ |++.+|.|.+++.++..+|+...+..+ .+. .+.....++... ..+-++.|+.+++.-...
T Consensus 705 efln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~ 780 (821)
T CHL00095 705 EFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLED 780 (821)
T ss_pred HHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 8888 999999999999999999988776532 111 112244555532 233456666666554433
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.6e-17 Score=170.36 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=146.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|..++... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 45678999999999999999988432 345578999999999999999999988653
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++.+. ...-..++.+.+.+. ...+.|++|||+|.+ +.+.++.|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHHHHHH
Confidence 33333221 011223455554443 234579999999999 445566666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..|++ .+.++.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...++. .+..+..++..+.|
T Consensus 141 k~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 141 KTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66664 23567788888888889999988 87 578999999999888888887765544 23346677777755
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
+.+++.+++..+... +...||.+++...+.
T Consensus 213 -slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 213 -SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred -cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 788888888776543 345688887776653
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.3e-17 Score=170.89 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=141.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 45678999999999999999988432 345568999999999999999999998761
Q ss_pred -----------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHH
Q 039866 227 -----------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREV 285 (418)
Q Consensus 227 -----------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~ 285 (418)
++.++... ..+-..++.+.+.+. ...+.|+||||+|.| +...
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s~~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------TNHA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------CHHH
Confidence 11111110 011233455555443 334579999999999 4455
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHHH
Q 039866 286 QRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD-VNFEELA 364 (418)
Q Consensus 286 ~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 364 (418)
++.|+..|++ ...++++|++||.++.+.+++++ |+ ..+.|+.++.++..+.++..+....+..+ ..+..|+
T Consensus 141 aNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 141 FNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred HHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555543 34678899999999999999999 88 68999999999999988887765544422 2356677
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 039866 365 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 401 (418)
Q Consensus 365 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~ 401 (418)
..+.| +.++..+++..+.... ...|+.+++..
T Consensus 213 ~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 213 QAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 77766 6788888877665432 23455554443
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=4.5e-17 Score=169.39 Aligned_cols=203 Identities=19% Similarity=0.243 Sum_probs=143.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|...+... +-++.+||+||+|||||++|+.+|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 35678999999999999998887432 234558999999999999999999998663
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++... ...-..++.+.+.+. .+.+.|++|||+|.| +...++.|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHH
Confidence 12222211 011223444444432 234579999999999 556677777
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g 369 (418)
..|++ +.+++++|++|+.+..+.+.+++ |+ ..+.|++++.++....+...+....+.. +..+..++..+.|
T Consensus 141 KtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 141 KTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77764 34577888888889999999999 87 7899999999999999988876544432 3345667777766
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.++..+++..|... +...|+.+++...+
T Consensus 213 -s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 213 -SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 677888888766533 23346666665544
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.76 E-value=9.2e-17 Score=161.34 Aligned_cols=224 Identities=22% Similarity=0.296 Sum_probs=152.5
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQ 237 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~ 237 (418)
..+.++|.++.++.+...+...+.. ..+.+++|+||||||||++++.+++.+ +..+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3457889999999998887543321 245579999999999999999999877 46789999864321
Q ss_pred ----------hhhcc--------hHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 039866 238 ----------MFIGD--------GAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 298 (418)
Q Consensus 238 ----------~~~g~--------~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 298 (418)
.+.+. .......+...... ..+.||+|||+|.+.... . ...+..++.....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~---~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------G---NDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------C---chHHHHHHHhhhc
Confidence 11110 12222333333332 346799999999996211 1 1345555544333
Q ss_pred CCCCCCeEEEEEeCCCC---CCChhhhCCCCce-eEEEcCCCCHHHHHHHHHHHhhcCC---CCCCCCHHHHHHHcCCC-
Q 039866 299 FSSDDRIKVIAATNRAD---ILDPALMRSGRLD-RKIELPHPSEEARARILQIHSRKMT---VHPDVNFEELARSTDDF- 370 (418)
Q Consensus 299 ~~~~~~vivI~ttn~~~---~l~~~l~r~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~g~- 370 (418)
.. ..++.+|+++|..+ .+++.+.+ |+. ..+.|++++.++..+|++.++..-. .-.+..+..++..+.+.
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 22 23788899988764 56777776 553 5789999999999999998875321 11223355566655332
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 371 -NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 371 -s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
..+.+..+|..|...|..++...|+.+|+..|+..+..
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 34666788999999999889999999999999998854
No 76
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.75 E-value=4.1e-18 Score=182.47 Aligned_cols=221 Identities=20% Similarity=0.308 Sum_probs=146.4
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh--------
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV-------- 236 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~-------- 236 (418)
.++.|++.+++.|.+++..... .+-..+..++|+||||+|||++++.+|..++.++++++++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4688999999999987753211 1112334699999999999999999999999999999876532
Q ss_pred -hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc------C----CCCCCCe
Q 039866 237 -QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G----FSSDDRI 305 (418)
Q Consensus 237 -~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~----~~~~~~v 305 (418)
..|.|...+.+.+.+..+....| |++|||+|++.+... + +....|+++++.-. . .-.-+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C--CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 23566666665555555543344 899999999965421 1 24568888886311 1 1123689
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc-----CCCC------CCCCHHHHHHH-cCCCcHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK-----MTVH------PDVNFEELARS-TDDFNGA 373 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~------~~~~~~~la~~-~~g~s~~ 373 (418)
++|+|+|.. .++|+|++ ||. +|.|+.++.++..+|++.++.. ..+. .+.....++.. +..+-.|
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999987 59999999 994 8999999999999999888741 1111 11123444432 2222234
Q ss_pred H----HHHHHHHHHHHHHHhC---CCCccHHHHHHHHH
Q 039866 374 Q----LKAVCVEAGMLALRRD---ATEVNHEDFNEGII 404 (418)
Q Consensus 374 d----i~~l~~~A~~~A~~~~---~~~It~~d~~~Al~ 404 (418)
. |..+|+.+.......+ ...|+.+++.+.+.
T Consensus 543 ~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 543 SLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 4 4445555444433332 23688888877765
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=8.2e-17 Score=159.57 Aligned_cols=210 Identities=19% Similarity=0.200 Sum_probs=143.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE--------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL-------- 230 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i-------- 230 (418)
..+.+|++|+|++.+++.+...+... +.++.+||+||||||||++|+++|+.+.+.....
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35678999999999999998877422 3455689999999999999999999885421100
Q ss_pred ccchhhhh-----h-h-c---chHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh
Q 039866 231 AGPQLVQM-----F-I-G---DGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 296 (418)
Q Consensus 231 ~~s~l~~~-----~-~-g---~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 296 (418)
+|.++... + + + .....++.+.+.+.. ..+.|++|||+|.+ +...++.++..++.
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLLk~lEe- 145 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALLKTLEE- 145 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHHHHHhc-
Confidence 01010000 0 0 0 112334455554432 23469999999998 34445556555553
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHH
Q 039866 297 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQL 375 (418)
Q Consensus 297 ~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di 375 (418)
.+.++.+|++|+.++.+.+++.+ |+ ..+.|++|+.++..+++...+...... ++..+..++..+.| +++++
T Consensus 146 ----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~a 217 (363)
T PRK14961 146 ----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDA 217 (363)
T ss_pred ----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 23466777778878889999988 87 589999999999999999888765533 23345667777765 67788
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 376 KAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 376 ~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
.+++..+... +...|+.+++.+++.
T Consensus 218 l~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 218 LNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8888766543 356788888887664
No 78
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=7.7e-17 Score=165.60 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=143.5
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
.+..+.++++|+|++.+++.+..++..... | .+++++||+||||||||++|+++|++++.+++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 344567899999999999999998854321 1 3467899999999999999999999999999999988653
Q ss_pred hhhhcchHHHHHHHHHHHHh------CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 237 QMFIGDGAKLVRDAFQLAKE------KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
.. ..+..+...+.. ..+.||+|||+|.+.... +......+..++.. .+..+|++
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~-------~~~~iIli 136 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK-------AKQPIILT 136 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc-------CCCCEEEe
Confidence 21 112222221111 246799999999985421 22344555555542 23457778
Q ss_pred eCCCCCCCh-hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 039866 311 TNRADILDP-ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388 (418)
Q Consensus 311 tn~~~~l~~-~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 388 (418)
+|.+..+.+ .+++ |+ ..+.|++|+..++..+++..+....+. ++..+..|+..+.| |++.+++.....+
T Consensus 137 ~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a-- 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA-- 207 (482)
T ss_pred ccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh--
Confidence 898888877 5655 54 689999999999999999888765543 23346677776544 6666665544433
Q ss_pred hCCCCccHHHHHHH
Q 039866 389 RDATEVNHEDFNEG 402 (418)
Q Consensus 389 ~~~~~It~~d~~~A 402 (418)
.+...|+.+++...
T Consensus 208 ~~~~~it~~~v~~~ 221 (482)
T PRK04195 208 EGYGKLTLEDVKTL 221 (482)
T ss_pred cCCCCCcHHHHHHh
Confidence 34556777777544
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=9e-17 Score=163.85 Aligned_cols=214 Identities=18% Similarity=0.230 Sum_probs=149.6
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE------E-
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK------L- 230 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~------i- 230 (418)
+..+.+|++++|++.+++.+...+... +.++++||+||||||||++|+++|+.+++.... .
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 346678999999999999998876322 345689999999999999999999998653210 0
Q ss_pred -----ccchhhhh----h------hcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHH
Q 039866 231 -----AGPQLVQM----F------IGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291 (418)
Q Consensus 231 -----~~s~l~~~----~------~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 291 (418)
+|..+... + ...+...++.+++.+... .+.|++|||+|.+ +...++.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHHHHHH
Confidence 11111100 0 011234556666666433 3569999999998 3344555555
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCC
Q 039866 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDF 370 (418)
Q Consensus 292 ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 370 (418)
.++. +...+++|++|+.++.+.+++.+ |+ ..+.|++++.++...+++..+...... .+..+..++..+.|
T Consensus 151 ~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G- 221 (507)
T PRK06645 151 TLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG- 221 (507)
T ss_pred HHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5543 34577788888888889999998 88 578999999999999999988765544 22346678887766
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
+.+++.+++..+...+.. ....||.+++...+.
T Consensus 222 slR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 222 SARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 788888888887665521 123688888776653
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.1e-16 Score=169.20 Aligned_cols=193 Identities=17% Similarity=0.190 Sum_probs=135.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE-------EEEc
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-------LKLA 231 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~-------~~i~ 231 (418)
..+.+|++|+|++.+++.|..++... +.++.+||+||||||||++|+++|+.+++.. ..++
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 45678999999999999998887422 2455679999999999999999999986641 1100
Q ss_pred -cchhhhh-------hhc---chHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh
Q 039866 232 -GPQLVQM-------FIG---DGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 296 (418)
Q Consensus 232 -~s~l~~~-------~~g---~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 296 (418)
|-.+... +-+ ..-..++.+...+. .+...|+||||+|.| ..+.++.|+..|++
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtLEE- 145 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTLEE- 145 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHHhc-
Confidence 0000000 000 11223444544443 234579999999999 55677777777764
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHH
Q 039866 297 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQL 375 (418)
Q Consensus 297 ~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di 375 (418)
...++++|++|+.+..+.+.+++ |+ ..+.|++++.++....++..+....+. .+..+..|+..+.| +.|++
T Consensus 146 ----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~A 217 (944)
T PRK14949 146 ----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDA 217 (944)
T ss_pred ----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 34577788888888889999998 88 689999999999999998887654433 22346667777766 67888
Q ss_pred HHHHHHHH
Q 039866 376 KAVCVEAG 383 (418)
Q Consensus 376 ~~l~~~A~ 383 (418)
.++|..+.
T Consensus 218 LnLLdQal 225 (944)
T PRK14949 218 LSLTDQAI 225 (944)
T ss_pred HHHHHHHH
Confidence 88887766
No 81
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.74 E-value=1.2e-16 Score=161.15 Aligned_cols=201 Identities=26% Similarity=0.365 Sum_probs=142.3
Q ss_pred CCCCCCccccCcHHHHHH---HHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQE---LIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~---l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..+.+|++++|+++.+.. +...+.. ..+.+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 345678999999999776 6666632 233479999999999999999999999999999987632
Q ss_pred hhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 236 VQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
. ...++.+++.+. ...+.||||||+|.+ ....++.|+..++. +.+++|++|
T Consensus 73 ~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le~-------~~iilI~at 127 (413)
T PRK13342 73 G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVED-------GTITLIGAT 127 (413)
T ss_pred c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhhc-------CcEEEEEeC
Confidence 1 223344444442 235679999999998 44566666666543 456667665
Q ss_pred --CCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCC--C-C-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 039866 312 --NRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT--V-H-PDVNFEELARSTDDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 312 --n~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~-~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 385 (418)
|+...+++++++ |+ ..+.|++|+.++...+++..+.... + . .+..+..++..+.| .++.+.+++..+...
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~ 203 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG 203 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334578999999 88 6899999999999999988775421 1 1 12235566776644 566666666665543
Q ss_pred HHHhCCCCccHHHHHHHHHHH
Q 039866 386 ALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 386 A~~~~~~~It~~d~~~Al~~~ 406 (418)
...|+.+++..++...
T Consensus 204 -----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 -----VDSITLELLEEALQKR 219 (413)
T ss_pred -----cCCCCHHHHHHHHhhh
Confidence 4568999988888764
No 82
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.73 E-value=2.3e-16 Score=170.91 Aligned_cols=222 Identities=23% Similarity=0.313 Sum_probs=159.2
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+-.+++++|+++.+..+.+.+.. +...+++|+||||||||++|+.+|+.+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 456789999999998888876532 234579999999999999999999976 355788
Q ss_pred Eccchhhh--hhhcchHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 230 LAGPQLVQ--MFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 230 i~~s~l~~--~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
++++.+.. .+.|+.+..++.+++.+.. ..+.||||||+|.+.+.+... +..+..+.|...+. ++.+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l~-------~G~l~ 318 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPALA-------RGELR 318 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHhh-------CCCeE
Confidence 88877653 5788899999999998864 457899999999998654321 12223344444443 46788
Q ss_pred EEEEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHcCCCcH----
Q 039866 307 VIAATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-----PDVNFEELARSTDDFNG---- 372 (418)
Q Consensus 307 vI~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g~s~---- 372 (418)
+|+||+..+ ..||+|.| ||. .|.++.|+.++...|++.....+... .+..+..++..+.+|.+
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 999998643 48999999 995 89999999999999987666544321 23346666677766543
Q ss_pred -HHHHHHHHHHHHHH-HHhCCCCccHHHHHHHHHHHH
Q 039866 373 -AQLKAVCVEAGMLA-LRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 373 -~di~~l~~~A~~~A-~~~~~~~It~~d~~~Al~~~~ 407 (418)
.....++.+|+... ......++..+++.+.+..+.
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~ 432 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAALE 432 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 45566777765544 333455666666666654443
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.6e-16 Score=164.70 Aligned_cols=212 Identities=20% Similarity=0.222 Sum_probs=147.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE--Eccch--
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK--LAGPQ-- 234 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~--i~~s~-- 234 (418)
..+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+++|+.+++.-.. ..|..
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 45678999999999999999987532 345679999999999999999999987653110 01110
Q ss_pred ---------hhhh-----hhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh
Q 039866 235 ---------LVQM-----FIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 296 (418)
Q Consensus 235 ---------l~~~-----~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 296 (418)
+... ..+.+...++.+++.+.. ..+.|++|||+|.+ +...++.|+..|++
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALLKtLEE- 145 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAMLKTLEE- 145 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHHHHHHh-
Confidence 0000 001122345556554432 34579999999998 44455666666654
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHH
Q 039866 297 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQL 375 (418)
Q Consensus 297 ~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di 375 (418)
..+++.+|++|+.+..+.+.+++ |+ ..+.|+.++.++....+...+....+. .+..+..|+..+.| +.+++
T Consensus 146 ----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdA 217 (709)
T PRK08691 146 ----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDA 217 (709)
T ss_pred ----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHH
Confidence 23567788888889999999987 88 578899999999999999888866554 23346777777755 78888
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 376 KAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 376 ~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
.+++..+... +...|+.+++...+...
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 8888776654 23467888777765443
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.2e-16 Score=158.72 Aligned_cols=202 Identities=15% Similarity=0.256 Sum_probs=146.8
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC--------------
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------------- 225 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~-------------- 225 (418)
.+.+|++|+|++.+++.+..++... +.++++||+||+|||||++|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 4578999999999999998877422 35678999999999999999999997643
Q ss_pred ----------cEEEEccchhhhhhhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHH
Q 039866 226 ----------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291 (418)
Q Consensus 226 ----------~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 291 (418)
.++.++.+.- .+-..++.+.+.+... .+.|++|||+|.+ +.+.++.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHHHHHH
Confidence 1233333211 1233456666665433 3569999999998 4445566655
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCC
Q 039866 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDF 370 (418)
Q Consensus 292 ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 370 (418)
.|++ +...+.+|++|+.++.+.+++++ |+ ..+.|.+++.++....+...+...+.. ++..+..++..+.|
T Consensus 139 ~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 139 TLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5553 33567788888888889999998 88 578999999999999998888765544 33446677777765
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.+++.+++..+..++ ...||.+++...+
T Consensus 210 slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7888888888776554 2468888887754
No 85
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.72 E-value=1.9e-16 Score=157.98 Aligned_cols=233 Identities=22% Similarity=0.257 Sum_probs=147.7
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHh---cCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhc
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQK---LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIG 241 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~---~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g 241 (418)
.|+|++.+++.+..++......-..... ....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4899999999998777433222100000 01124567999999999999999999999999999999988754 5777
Q ss_pred ch-HHHHHHHHHH----HHhCCCeEEEEcCCCcccccCCC---CCCCCCHHHHHHHHHHHHhhc--------CCCCCCCe
Q 039866 242 DG-AKLVRDAFQL----AKEKSPCIIFIDEIDAIGTKRFD---SEVSGDREVQRTMLELLNQLD--------GFSSDDRI 305 (418)
Q Consensus 242 ~~-~~~~~~~~~~----a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~l~~ll~~~~--------~~~~~~~v 305 (418)
.. +..+..++.. .....++||||||||.+.+.+.+ ....+...+|+.|+++|+... ......++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 64 3333444332 23446789999999999876322 112233468999999997321 01112245
Q ss_pred EEEEEeCCC-----------------------------C-----------------------CCChhhhCCCCceeEEEc
Q 039866 306 KVIAATNRA-----------------------------D-----------------------ILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 306 ivI~ttn~~-----------------------------~-----------------------~l~~~l~r~~Rf~~~i~~ 333 (418)
++|+|+|.. . .|.|+|+. |++.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeec
Confidence 566666540 0 14677777 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhh-------cCCCC---CCCCHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHhC-------
Q 039866 334 PHPSEEARARILQI----HSR-------KMTVH---PDVNFEELARS--TDDFNGAQLKAVCVEAGMLALRRD------- 390 (418)
Q Consensus 334 ~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~--~~g~s~~di~~l~~~A~~~A~~~~------- 390 (418)
.+++.++..+|+.. .++ ...+. .+..+..|+.. ..++-.|.|+.++.....-...+-
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~~ 389 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDVE 389 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCCc
Confidence 99999999999862 222 11121 22335566664 234445777777776655544331
Q ss_pred CCCccHHHHH
Q 039866 391 ATEVNHEDFN 400 (418)
Q Consensus 391 ~~~It~~d~~ 400 (418)
...|+.+.+.
T Consensus 390 ~v~I~~~~v~ 399 (412)
T PRK05342 390 KVVITKEVVE 399 (412)
T ss_pred eEEECHHHhc
Confidence 1236666654
No 86
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.72 E-value=3.9e-16 Score=162.77 Aligned_cols=220 Identities=19% Similarity=0.255 Sum_probs=150.1
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEEccch
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAGPQ 234 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i~~s~ 234 (418)
+.|.|.++.++.|...+...+.. -.++..++|+|+||||||.+++.+.+++ ...+++|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 67999999999999988655432 1233335799999999999999998876 25678999954
Q ss_pred hhhh----------hhcc-------hHHHHHHHHHHHH--hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh
Q 039866 235 LVQM----------FIGD-------GAKLVRDAFQLAK--EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 235 l~~~----------~~g~-------~~~~~~~~~~~a~--~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 295 (418)
+... +.+. ....+..+|.... .....||+|||||.|... .+..|+.+++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 3211 1111 1233445555442 233569999999999532 34667888876
Q ss_pred hcCCCCCCCeEEEEEeCC---CCCCChhhhCCCCcee-EEEcCCCCHHHHHHHHHHHhhcCC-CCCCCCHHHHHHHcCCC
Q 039866 296 LDGFSSDDRIKVIAATNR---ADILDPALMRSGRLDR-KIELPHPSEEARARILQIHSRKMT-VHPDVNFEELARSTDDF 370 (418)
Q Consensus 296 ~~~~~~~~~vivI~ttn~---~~~l~~~l~r~~Rf~~-~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~g~ 370 (418)
... ....++||+++|. ++.++|.+.+ ||.. .+.|++|+.+++.+||+.++.... .-.+..+..+|......
T Consensus 896 ~~~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 896 PTK--INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred hhc--cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 432 3457899999986 4567788887 6654 588999999999999999887532 11233355566533322
Q ss_pred --cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhh
Q 039866 371 --NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 371 --s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 410 (418)
..|..-.+|+.|+.. ++...|+.+|+.+|+.++....
T Consensus 972 SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred CCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhh
Confidence 345555677777765 3456899999999998876543
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.72 E-value=7.3e-16 Score=151.42 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=138.7
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-----CcEEEEcc
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAG 232 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i~~ 232 (418)
+..+.+|++++|++.+++.+...+... ...+++|+||||||||++|+++++++. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345677999999999999998877421 122699999999999999999999873 35788888
Q ss_pred chhhhhh-------------hcc-------hHHHHHHHHHHHHh-----CCCeEEEEcCCCcccccCCCCCCCCCHHHHH
Q 039866 233 PQLVQMF-------------IGD-------GAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQR 287 (418)
Q Consensus 233 s~l~~~~-------------~g~-------~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 287 (418)
+++.... .+. ....++.+...... ..+.+|+|||+|.+ ....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~~~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------REDAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------CHHHHH
Confidence 7664321 010 01122222222222 23469999999988 345566
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHH
Q 039866 288 TMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARS 366 (418)
Q Consensus 288 ~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 366 (418)
.|..+++... ..+.+|++++.+..+.+.+.+ |+ ..+.+++|+.++...+++..+...... ++..+..++..
T Consensus 144 ~L~~~le~~~-----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 144 ALRRIMEQYS-----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHhcc-----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6776666431 234466666666677788887 76 578999999999999999888765544 33456677776
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 367 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 367 ~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
+.| +.+. ++......+. ....||.+++.+++..
T Consensus 216 ~~g-dlr~---l~~~l~~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 216 AGG-DLRK---AILTLQTAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred cCC-CHHH---HHHHHHHHHH--cCCCCCHHHHHHHhCC
Confidence 643 3444 4443333332 2347999998887653
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3e-16 Score=162.96 Aligned_cols=203 Identities=19% Similarity=0.244 Sum_probs=142.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 34578999999999999999987432 345568999999999999999999998652
Q ss_pred -----------------EEEEccchhhhhhhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHH
Q 039866 227 -----------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREV 285 (418)
Q Consensus 227 -----------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~ 285 (418)
++.++... ..+-..++.+.+.+... .+.|++|||+|.| +.+.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-----------s~~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-----------TNTA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------CHHH
Confidence 11111110 01123455565554432 3569999999999 4445
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHH
Q 039866 286 QRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELA 364 (418)
Q Consensus 286 ~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 364 (418)
++.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+....+.- +..+..|+
T Consensus 141 ~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 141 FNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred HHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555554443 34567788888888889899988 87 6899999999999999988887655542 33467777
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 365 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 365 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
..+.| +.+++.+++..+... +...||.+++.+.+
T Consensus 213 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 213 RAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 77765 677888887665544 23457777776654
No 89
>PRK06893 DNA replication initiation factor; Validated
Probab=99.72 E-value=4e-16 Score=144.92 Aligned_cols=212 Identities=13% Similarity=0.167 Sum_probs=134.8
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccch
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 234 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~ 234 (418)
..+..+|++++|.++.. ....+.. .+.. .....++||||||||||+|++++|+++ +....+++...
T Consensus 9 ~~~~~~fd~f~~~~~~~--~~~~~~~------~~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNLL--LLDSLRK------NFID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChHH--HHHHHHH------Hhhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 34567899988766432 1122211 1111 122358999999999999999999986 34555555432
Q ss_pred hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE-EEEEeCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK-VIAATNR 313 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi-vI~ttn~ 313 (418)
... .....+.... .+.+|+|||++.+.+ ....+..++.+++.... .+..+ |++++..
T Consensus 78 ~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~---~~~~illits~~~ 135 (229)
T PRK06893 78 SQY--------FSPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE---QGKTLLLISADCS 135 (229)
T ss_pred hhh--------hhHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCcEEEEeCCCC
Confidence 211 1112233332 346999999998853 33455677888876532 23334 4444555
Q ss_pred CCCCC---hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 039866 314 ADILD---PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 314 ~~~l~---~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 389 (418)
|..++ |.+.++.++...+.+++|+.+++.+|++..+....+. ++.....|+....| +.+.+..++......+...
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~ 214 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA 214 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc
Confidence 66554 8898844445689999999999999999887654443 33446778877765 6777787777655444443
Q ss_pred CCCCccHHHHHHHHH
Q 039866 390 DATEVNHEDFNEGII 404 (418)
Q Consensus 390 ~~~~It~~d~~~Al~ 404 (418)
++ .||...+++++.
T Consensus 215 ~~-~it~~~v~~~L~ 228 (229)
T PRK06893 215 QR-KLTIPFVKEILG 228 (229)
T ss_pred CC-CCCHHHHHHHhc
Confidence 44 699999888763
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=99.71 E-value=6.2e-16 Score=150.87 Aligned_cols=200 Identities=19% Similarity=0.188 Sum_probs=134.4
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-----CcEEEEcc
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAG 232 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i~~ 232 (418)
+..+.+|++++|++++++.|...+... ...++||+||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 345678999999999999988765321 223699999999999999999999872 23566666
Q ss_pred chhhhhhhcchHHHHHHHHHHH-H------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCe
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLA-K------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 305 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a-~------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v 305 (418)
++.... ..++...... . ...+.|++|||+|.+ ....++.|...++.. ...+
T Consensus 73 sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~-----~~~t 130 (319)
T PLN03025 73 SDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY-----SNTT 130 (319)
T ss_pred cccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----cCCc
Confidence 543211 1222222111 1 123579999999999 445677777776532 2345
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~ 384 (418)
.+|+++|....+.+++++ |+ ..+.|++|+.++....++..+....+. .+..+..++..+.| ..+.+.+.++.+.
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~- 205 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH- 205 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-
Confidence 577888888888899998 87 589999999999999998888765543 33446677776654 3444444444221
Q ss_pred HHHHhCCCCccHHHHHH
Q 039866 385 LALRRDATEVNHEDFNE 401 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~ 401 (418)
. +...|+.+++.+
T Consensus 206 --~--~~~~i~~~~v~~ 218 (319)
T PLN03025 206 --S--GFGFVNQENVFK 218 (319)
T ss_pred --h--cCCCCCHHHHHH
Confidence 1 234566666544
No 91
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=6.5e-16 Score=158.54 Aligned_cols=203 Identities=16% Similarity=0.270 Sum_probs=141.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-------------
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------- 226 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------- 226 (418)
.+.+|++|+|++.+++.+...+... +.++.+||+||+|||||++|+.+|+.+.+.
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4578999999999999998877422 345568999999999999999999987541
Q ss_pred -----------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHH
Q 039866 227 -----------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291 (418)
Q Consensus 227 -----------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 291 (418)
++.++.... . +-..++.+.+.+. ...+.|++|||+|.+ +...++.|+.
T Consensus 79 C~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHHH
Confidence 222221100 0 1122334444333 234579999999998 4556677777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCC
Q 039866 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDF 370 (418)
Q Consensus 292 ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 370 (418)
.+++ ..+.+++|++|+.+..+.+++++ |+ ..+.|.+++.++....+...+....+. .+..+..++..+.|
T Consensus 142 ~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G- 212 (546)
T PRK14957 142 TLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG- 212 (546)
T ss_pred HHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 7764 23566777777778888888888 88 689999999999998888877765544 23345667776654
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
+.+++.+++..+...+ ...|+.+++.+++.
T Consensus 213 dlR~alnlLek~i~~~----~~~It~~~V~~~l~ 242 (546)
T PRK14957 213 SLRDALSLLDQAISFC----GGELKQAQIKQMLG 242 (546)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 6778888887766443 24588877776543
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=6.9e-16 Score=155.47 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=133.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHH-HHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK-LVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
.++++||||||||||+|++++++++ +..++++++.++...+...... ....+....+ .+.+|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4569999999999999999999987 5778999988876654432211 1112222232 246999999999854
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC---CCChhhhCCCCce--eEEEcCCCCHHHHHHHHHH
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---ILDPALMRSGRLD--RKIELPHPSEEARARILQI 347 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~---~l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~ 347 (418)
+ ...+..++.+++.+.. .+..+||+++..|. .+++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~---------~~~~~~l~~~~n~~~~---~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 K---------ERTQEEFFHTFNALHE---NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred C---------HHHHHHHHHHHHHHHH---CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 3 2345667777765432 12334554444554 36688888 886 4899999999999999999
Q ss_pred HhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 039866 348 HSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 348 ~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
.+....+. ++..+..+|....+ +.+++..++......|...+ ..||.+.+.+++....
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 98765544 34457778877765 67888888888777765444 5588888888887764
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7.6e-16 Score=159.41 Aligned_cols=203 Identities=18% Similarity=0.167 Sum_probs=139.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|..++... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 45678999999999999999988432 345568999999999999999999987642
Q ss_pred --------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 227 --------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 227 --------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
++.++++.. .+-..++.+.+.+. ...+.|++|||+|.+ ....++.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NA 137 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNA 137 (584)
T ss_pred HHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHH
Confidence 111211100 01223344433332 234569999999999 4456666
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHc
Q 039866 289 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARST 367 (418)
Q Consensus 289 l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~ 367 (418)
|+..|++ ...++++|++|+.++.+.+++++ |+ ..+.|..++.++..+.+...+......- +..+..++..+
T Consensus 138 LLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 138 LLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6666654 34577888888888999999998 86 6899999999999988888887655432 22345555555
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 368 DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 368 ~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
. .+.+++.+++..+...+ +...||.+++...
T Consensus 210 ~-GdlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 210 G-GSPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred C-CCHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 4 46778888887765432 2345666665544
No 94
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-17 Score=162.34 Aligned_cols=270 Identities=22% Similarity=0.287 Sum_probs=180.5
Q ss_pred ccCCceEEEeecccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhcccc---ccCCCCCCccccCcHHHHHH
Q 039866 100 QRKGKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEV---DEKPTEDYNDIGGLEKQIQE 176 (418)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~i~G~~~~~~~ 176 (418)
..+...+|+.|.+.++.++|...+.+..|++..+.+.-.+...+......+....+. .......+..++|.+.+++.
T Consensus 73 ~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~ 152 (464)
T COG2204 73 RDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQ 152 (464)
T ss_pred hCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHH
Confidence 445678999999999999999999999999998877554444333222211111111 11223568899999999999
Q ss_pred HHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh-----hhcchHH---
Q 039866 177 LIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-----FIGDGAK--- 245 (418)
Q Consensus 177 l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~-----~~g~~~~--- 245 (418)
+.+.+... .+...+|||+|++||||..+|++|++.. +.||+.+||..+... ++|...+
T Consensus 153 l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFT 221 (464)
T COG2204 153 LRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFT 221 (464)
T ss_pred HHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcC
Confidence 99988432 1355679999999999999999999987 569999999765443 3332221
Q ss_pred -HH---HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--CCCC----CCCeEEEEEeCCC-
Q 039866 246 -LV---RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSS----DDRIKVIAATNRA- 314 (418)
Q Consensus 246 -~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~----~~~vivI~ttn~~- 314 (418)
.. ...|+.|. .++||||||..+ +.+.|..|+++|++.. ...+ +-++.||++||..
T Consensus 222 GA~~~r~G~fE~A~---GGTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL 287 (464)
T COG2204 222 GAITRRIGRFEQAN---GGTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDL 287 (464)
T ss_pred CcccccCcceeEcC---CceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCH
Confidence 11 12444443 359999999999 7899999999998643 2222 2378899999963
Q ss_pred ------CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHhh----cCCCC-CCCCHHHHHHH-cCCCcH--HHHH
Q 039866 315 ------DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHSR----KMTVH-PDVNFEELARS-TDDFNG--AQLK 376 (418)
Q Consensus 315 ------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~~----~~~~~-~~~~~~~la~~-~~g~s~--~di~ 376 (418)
..|.+.|.- |+ .++.+..|+..+|.+ ++.+++. ..... ..++...+... .+.|.| ++|+
T Consensus 288 ~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~ 364 (464)
T COG2204 288 EEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELE 364 (464)
T ss_pred HHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHH
Confidence 245566655 66 377888888877765 4444443 33222 34445555443 344555 7888
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHH
Q 039866 377 AVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 377 ~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
+++..+...+ ....|+.+|+.
T Consensus 365 N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 365 NVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHHHHhcC---Cccccchhhcc
Confidence 8888777666 44455555543
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1.2e-15 Score=158.40 Aligned_cols=203 Identities=21% Similarity=0.259 Sum_probs=143.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.+...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 45678999999999999999988432 345679999999999999999999987532
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++.+ .+.+...++.+.+.+.. ..+.|++|||+|.| ....++.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHH
Confidence 2222221 01223445666666543 33579999999998 334445555
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..+++ ++..+++|++|+.++.+.+++++ |+ ..+.|++|+.++....++..+....+. .+..+..++..+.|
T Consensus 141 KtLEe-----pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 141 KTLEE-----PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHhcC-----CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 44442 34567778788888999999998 88 478999999999999998888765544 23346667777665
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.+++.+++..+...+ ...||.+++...+
T Consensus 213 -~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 213 -GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred -CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 7778888887765542 3457777665543
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.2e-16 Score=160.84 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=142.8
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEE-E-Eccchh--
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL-K-LAGPQL-- 235 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~-~-i~~s~l-- 235 (418)
.+.+|++|+|++.+++.+...+... +.++.+||+||+|+|||++|+.+|+.+++... . -.|..+
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4568999999999999999887432 34556899999999999999999999865210 0 011110
Q ss_pred -h---h----hh--h----cchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc
Q 039866 236 -V---Q----MF--I----GDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 297 (418)
Q Consensus 236 -~---~----~~--~----g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 297 (418)
. . .+ + ......++.+.+.+.. ..+.|++|||+|.+ +.+.++.|+..+++
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~naLLK~LEe-- 145 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFNAMLKTLEE-- 145 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHHHHHHHHhC--
Confidence 0 0 00 0 1122345556655543 23469999999998 44455555555553
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCCCcHHHHH
Q 039866 298 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGAQLK 376 (418)
Q Consensus 298 ~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~di~ 376 (418)
....+++|++|+.++.+.+.+++ |+ ..+.|+.++.++....+...+....+.. +..+..++..+.| +.+++.
T Consensus 146 ---pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al 218 (527)
T PRK14969 146 ---PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDAL 218 (527)
T ss_pred ---CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 33567788888888888888888 87 6899999999999988888776544432 2335666776654 678888
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 377 AVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 377 ~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
+++..|... +...|+.+++...+.
T Consensus 219 ~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 219 SLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 888776554 355688887776554
No 97
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=9.8e-16 Score=156.85 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=140.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+..|++|+|++.++..|..++... ..++.+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 45678999999999999999887432 345567999999999999999999988531
Q ss_pred -----------EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHH
Q 039866 227 -----------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291 (418)
Q Consensus 227 -----------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 291 (418)
++.++.+. ...-..++.+.+.+.. ..+.|++|||+|.+ ....++.|+.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLLk 138 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALLK 138 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHHH
Confidence 23333221 0112234444443332 34579999999987 3344455544
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCC
Q 039866 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDF 370 (418)
Q Consensus 292 ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 370 (418)
.++. ...++++|++++.+..+.+.+.+ |+ ..+.|++|+.++....++..+....+. .+..+..++..+.|
T Consensus 139 ~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 139 TLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 4443 23467778888888899999988 87 479999999999999999888765544 23346677777765
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
..+++.+++..+... ...||.+++...+.
T Consensus 210 dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 210 AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 566777777665432 33688888776643
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=6.2e-16 Score=157.73 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=136.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHH-HHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK-LVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
.++++||||||+|||+|++++++++ +..++++++.++...+.+.... ....+.+..+ .+.+|+|||+|.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC
Confidence 3569999999999999999999987 5668899998887665443221 1112222222 467999999999853
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhCCCCce--eEEEcCCCCHHHHHHHHHH
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIELPHPSEEARARILQI 347 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~ 347 (418)
+ ...+..++.+++.+... +..+||++...|.. +++.+.+ ||. ..+.+.+|+.++|..|++.
T Consensus 226 ~---------~~~~~~l~~~~n~l~~~---~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 226 K---------ERTQEEFFHTFNALHEA---GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred C---------HHHHHHHHHHHHHHHHC---CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHH
Confidence 2 23456677777654322 23345555555544 6788988 885 4899999999999999999
Q ss_pred HhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 039866 348 HSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 348 ~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
.+....+. ++..+..++..+.| +.+.+..++......|...+ ..||.+.+.+++..+.
T Consensus 292 ~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 292 KAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 98764433 33447777777665 68888888888877776554 4589999999998764
No 99
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.3e-15 Score=147.13 Aligned_cols=218 Identities=20% Similarity=0.337 Sum_probs=157.1
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-----EEEEccchhhhhh-
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-----FLKLAGPQLVQMF- 239 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~-----~~~i~~s~l~~~~- 239 (418)
.+.+.++.+..+...+...+.. ..|.++++|||||||||.+++.+++++..+ +++|||-.+...+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3889999999999987655443 355579999999999999999999988433 8999996553321
Q ss_pred --------------hcch-HHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q 039866 240 --------------IGDG-AKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD 303 (418)
Q Consensus 240 --------------~g~~-~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 303 (418)
.|.. ......+++.... ....||+|||+|.|.... ...|+.++...... ..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN--KV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc--ce
Confidence 1111 2223334444433 445799999999997543 15777787765444 56
Q ss_pred CeEEEEEeCCCC---CCChhhhCCCCce-eEEEcCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHHH---HHcCCCcHH
Q 039866 304 RIKVIAATNRAD---ILDPALMRSGRLD-RKIELPHPSEEARARILQIHSRKMTVH---PDVNFEELA---RSTDDFNGA 373 (418)
Q Consensus 304 ~vivI~ttn~~~---~l~~~l~r~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~la---~~~~g~s~~ 373 (418)
++.+|+.+|..+ .++|.+.+ ++. ..|.||+++.+|...|+..+....... .+..+..+| ....| ..+
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR 232 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DAR 232 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHH
Confidence 788999999764 78888887 443 368999999999999999887643222 122233333 33333 566
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 374 QLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 374 di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
-...+|+.|+..|.+++...++.+|+..|...+..
T Consensus 233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 77789999999999999999999999999666654
No 100
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.69 E-value=1.2e-15 Score=148.70 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=116.7
Q ss_pred ccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch
Q 039866 155 EVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 234 (418)
Q Consensus 155 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~ 234 (418)
...+..+.+|++++|++.+++.+...+... ..|+.+||+||||+|||++|+++++.++.+++.++++.
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 344556688999999999999998887421 34556777999999999999999999999999999876
Q ss_pred hhhhhhcchHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
.. .......+........ ...+.||+|||+|.+. ..+.+..+..+++.. ..++.+|+++|.
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~n~ 140 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITANN 140 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEcCC
Confidence 11 1111111211111111 1346899999999883 234556666666642 245678899999
Q ss_pred CCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHh
Q 039866 314 ADILDPALMRSGRLDRKIELPHPSEEARARILQIHS 349 (418)
Q Consensus 314 ~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~ 349 (418)
+..+.+++++ ||. .+.|+.|+.+++..++..+.
T Consensus 141 ~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 141 KNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9999999998 884 78999999999988776543
No 101
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.3e-15 Score=156.66 Aligned_cols=202 Identities=18% Similarity=0.279 Sum_probs=139.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++++|++.+++.+..++... +.++++||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45678999999999999998877321 345679999999999999999999987431
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++++. ..+-..++.+...+... .+.|++|||+|.+ +...++.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHHHHHHH
Confidence 11222110 01122345555544432 3469999999998 445566676
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..+++ ++..+++|++|+.+..+.+++++ |+ ..+.|++|+..+....+...+...... ++..+..++..+.|
T Consensus 141 KtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 141 KTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66664 33567788888888999999998 87 479999999999999888877655432 23345667777665
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
+.+++.+++..+...+ + ..|+.+++...
T Consensus 213 -dlR~AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 213 -SLRDGLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred -cHHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 6677777776644332 2 23777766653
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=6.3e-16 Score=153.60 Aligned_cols=188 Identities=22% Similarity=0.290 Sum_probs=125.4
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE-Eccc--------
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK-LAGP-------- 233 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~-i~~s-------- 233 (418)
.|++|+|++.+++.+...+.....+ +...+...++++||+||||+|||++|+++|+.+.+.--. ..|.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4889999999999999999765432 222333457789999999999999999999987543100 0010
Q ss_pred ------hhhh--h-hhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 039866 234 ------QLVQ--M-FIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS 300 (418)
Q Consensus 234 ------~l~~--~-~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 300 (418)
++.- . -..-.-..++.+++.+... .+.|++|||+|.+ +...++.|+..+++
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe----- 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE----- 143 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc-----
Confidence 0000 0 0001123466677666542 3469999999999 45556666666653
Q ss_pred CCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHH
Q 039866 301 SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLK 376 (418)
Q Consensus 301 ~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 376 (418)
++.++++|.+|+.++.+.|++++ |+ ..+.|++|+.++...++.... ..+ ......++..+.|..+..+.
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 23345566666668999999999 88 689999999999877776322 222 23355678888887765443
No 103
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.4e-15 Score=163.09 Aligned_cols=207 Identities=19% Similarity=0.139 Sum_probs=137.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE--Eccch--
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK--LAGPQ-- 234 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~--i~~s~-- 234 (418)
..+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.||+.+.|.--. -.|..
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 45678999999999999999987432 344568999999999999999999998652100 00111
Q ss_pred -hhhh------------hhcc---hHHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 039866 235 -LVQM------------FIGD---GAKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 294 (418)
Q Consensus 235 -l~~~------------~~g~---~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 294 (418)
+... +-+. .-..++.+.+.+ ....+.|+||||+|.| +.+.++.|+.+|+
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a~NaLLK~LE 145 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQGFNALLKIVE 145 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHHHHHHHHHHh
Confidence 0000 0000 112233333322 2345679999999999 5566777777776
Q ss_pred hhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCCCcHH
Q 039866 295 QLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGA 373 (418)
Q Consensus 295 ~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~ 373 (418)
+ ...++++|++|+.++.|.+++++ |+ .++.|..++.++...++...+....+.. +..+..++..+.| +.+
T Consensus 146 E-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 146 E-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred C-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 5 23567788888888889899998 87 5889999999999999988887655542 2234556666654 667
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 374 QLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 374 di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
++.+++......+ +...||.+++.
T Consensus 217 ~Al~eLEKLia~~---~~~~IT~e~V~ 240 (824)
T PRK07764 217 DSLSVLDQLLAGA---GPEGVTYERAV 240 (824)
T ss_pred HHHHHHHHHHhhc---CCCCCCHHHHH
Confidence 7777776654322 23346665443
No 104
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=2.3e-15 Score=139.45 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=137.9
Q ss_pred CCCCcccc--CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 161 TEDYNDIG--GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 161 ~~~~~~i~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
..+|++++ +....++.+...+. ...+.+++|+||+|||||++|+++++.+ +.++++++|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34566665 45667777776542 1346689999999999999999999876 578899999877
Q ss_pred hhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-CC
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN-RA 314 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn-~~ 314 (418)
.... ..++.... .+.+|+|||+|.+.. +.+.+..+..+++..... +. .+|+|++ .+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~~---~~-~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVREA---GG-RLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHHc---CC-eEEEECCCCh
Confidence 6432 12233222 235999999999842 223466777777654321 22 3445554 33
Q ss_pred CCC---ChhhhCCCCc--eeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 039866 315 DIL---DPALMRSGRL--DRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 388 (418)
Q Consensus 315 ~~l---~~~l~r~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 388 (418)
..+ .+.+.+ |+ ...+.+|+|+.+++..+++..+....+. ++..+..|+... +.+.+++.++++.+...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 332 277777 66 4689999999999999998877644433 233466677754 45789999999998876655
Q ss_pred hCCCCccHHHHHHHH
Q 039866 389 RDATEVNHEDFNEGI 403 (418)
Q Consensus 389 ~~~~~It~~d~~~Al 403 (418)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 54 469988887765
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.7e-15 Score=156.36 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=138.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.|..++... +-+..+||+||+|||||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 35678999999999999999887432 234579999999999999999999988652
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++...- ..-..++.+.+.+. ...+.||+|||+|.+ ..+.++.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHHHHH
Confidence 233322110 01122333332222 234579999999999 445566666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..+++ ...++++|++||.+..+.+.+++ |+ ..+.|+.++.++...++...+...... .+..+..++..+.|
T Consensus 141 k~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 141 KTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66654 23467888888888888889988 87 478999999999999998877655443 23346667776665
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.+++.+++..+. + .+...|+.+++..++
T Consensus 213 -dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 4566666665442 2 244578888766554
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.68 E-value=4.3e-15 Score=138.50 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=134.9
Q ss_pred CCCCCCcccc-C-cHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 159 KPTEDYNDIG-G-LEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 159 ~~~~~~~~i~-G-~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
.+..+|++.+ | ...++..+...... ....+++||||||||||++++++++.+ +..+.+++..
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 4456777766 4 44455555554321 233479999999999999999999876 3445555554
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-eEEEEEeC
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATN 312 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~-vivI~ttn 312 (418)
..... ...+.+.... ..+|+|||++.+.. ....+..++.+++.... .++ .+++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCCC
Confidence 43211 1122222222 25999999999843 34566677777766432 233 34444455
Q ss_pred CCCC---CChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 313 RADI---LDPALMRSGRLD--RKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 313 ~~~~---l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
+|.. +.|.+++ |+. .++.+.+|+.+++.++++..+....+. ++.....++....| +.+.+..++......+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 5554 5799999 875 689999999999999998866654443 33446777877765 6788888888754444
Q ss_pred HHhCCCCccHHHHHHHHH
Q 039866 387 LRRDATEVNHEDFNEGII 404 (418)
Q Consensus 387 ~~~~~~~It~~d~~~Al~ 404 (418)
... ...||...+++++.
T Consensus 218 l~~-~~~it~~~~k~~l~ 234 (235)
T PRK08084 218 ITA-QRKLTIPFVKEILK 234 (235)
T ss_pred Hhc-CCCCCHHHHHHHHc
Confidence 433 34599988888763
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=4.3e-15 Score=137.90 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=137.1
Q ss_pred CCCCCCcccc--CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 159 KPTEDYNDIG--GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 159 ~~~~~~~~i~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
.++.+|++++ +...++..+...+. +..+..+++|+||+|||||++|+++++++ +.+++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456788866 33455555555432 12355689999999999999999999976 6788888887
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
.+.... .. ...+.+|+|||+|.+ +...+..+..+++.... .+..++|++++.
T Consensus 80 ~~~~~~------------~~--~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLAF------------DF--DPEAELYAVDDVERL-----------DDAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred HhHHHH------------hh--cccCCEEEEeChhhc-----------CchHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 654221 11 123569999999988 33456677777765432 233334555543
Q ss_pred -CC--CCChhhhCCCCc--eeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 314 -AD--ILDPALMRSGRL--DRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 314 -~~--~l~~~l~r~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
+. .+.+.+.+ || ...+.+|+|+.+++..++...+....+. ++..+..++....| +.+++..+++.....|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 21 35677877 76 4699999999999988988877654443 23346667775544 67889989888665554
Q ss_pred HhCCCCccHHHHHHHHH
Q 039866 388 RRDATEVNHEDFNEGII 404 (418)
Q Consensus 388 ~~~~~~It~~d~~~Al~ 404 (418)
..+ ..||...+.+++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 444 6899999988875
No 108
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.68 E-value=1.2e-15 Score=151.46 Aligned_cols=223 Identities=22% Similarity=0.279 Sum_probs=144.3
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHH-Hh---cCC-CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-h
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERF-QK---LGV-RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-M 238 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~-~~---~g~-~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~ 238 (418)
+.|+||+.+++.+..++......-... .. .++ .+..++||+||||||||++|+++|..++.+|..++++.+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 458999999999988773322210000 00 000 12357999999999999999999999999999999887653 4
Q ss_pred hhcch-HHHHHHHHHH----HHhCCCeEEEEcCCCcccccCCCCC---CCCCHHHHHHHHHHHHhhc--------CCCCC
Q 039866 239 FIGDG-AKLVRDAFQL----AKEKSPCIIFIDEIDAIGTKRFDSE---VSGDREVQRTMLELLNQLD--------GFSSD 302 (418)
Q Consensus 239 ~~g~~-~~~~~~~~~~----a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~l~~ll~~~~--------~~~~~ 302 (418)
|+|.. +..+..++.. .....++||||||+|++.+++.+.. ......+|+.|+++|+... ...+.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77764 3333333332 2234568999999999987542211 1223468999999995211 01112
Q ss_pred CCeEEEEEeCCC---------------------------C-----------------------CCChhhhCCCCceeEEE
Q 039866 303 DRIKVIAATNRA---------------------------D-----------------------ILDPALMRSGRLDRKIE 332 (418)
Q Consensus 303 ~~vivI~ttn~~---------------------------~-----------------------~l~~~l~r~~Rf~~~i~ 332 (418)
.++++|+|+|.. + .+.|+|+. |++.++.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEee
Confidence 367788888750 0 14577777 9999999
Q ss_pred cCCCCHHHHHHHHHHH----hhcC-------CCC---CCCCHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHh
Q 039866 333 LPHPSEEARARILQIH----SRKM-------TVH---PDVNFEELARST--DDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 333 ~~~p~~~~r~~il~~~----~~~~-------~~~---~~~~~~~la~~~--~g~s~~di~~l~~~A~~~A~~~ 389 (418)
|.+++.++..+|+... .+++ .+. .+..+..|+... ..+-+|.|+.+++....-+..+
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 9999999999988652 2211 111 222356666642 3445678888888877666544
No 109
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.68 E-value=1.5e-15 Score=143.90 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=126.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch------hhhhhhcchHHH-H--------------------HHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ------LVQMFIGDGAKL-V--------------------RDA 250 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~------l~~~~~g~~~~~-~--------------------~~~ 250 (418)
...++||+||||||||++|+++|..++.+++.++|.. ++..+.|..... . +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3457999999999999999999999999999998754 222222211110 0 012
Q ss_pred HHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc----CCC-------CCCCeEEEEEeCCCC----
Q 039866 251 FQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD----GFS-------SDDRIKVIAATNRAD---- 315 (418)
Q Consensus 251 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~-------~~~~vivI~ttn~~~---- 315 (418)
+..+. .+.+|+|||++.+ +++++..|+.+|+... +.. ...++.||+|+|+..
T Consensus 100 ~~A~~--~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR--EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH--cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22222 2359999999998 7789999999997532 100 123678999999763
Q ss_pred -CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHH-----H-c---CCCcHHHHHHHHHHHHHH
Q 039866 316 -ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELAR-----S-T---DDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 316 -~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~-----~-~---~g~s~~di~~l~~~A~~~ 385 (418)
.+++++++ || ..+.++.|+.++..+|++.++. .. +.....+.. + . ...+ ++..+.-|...
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~-~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~ 236 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VA-EDSAATIVRLVREFRASGDEITSG---LRASLMIAEVA 236 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CC-HHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHH
Confidence 56899998 98 5899999999999999988752 22 112222221 1 1 1223 44444444444
Q ss_pred HHHhCCCCccHHHHHHHHHHHHHh
Q 039866 386 ALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 386 A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
+....+..++.+||.+.+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred HHcCCCCCCCcHHHHHHHHHHhcc
Confidence 444568889999999998877654
No 110
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.68 E-value=3.2e-15 Score=147.98 Aligned_cols=203 Identities=22% Similarity=0.305 Sum_probs=139.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
.++.+|++++|++.+++.+...+... ..++.+||+||||+|||++|+++++.+.+.
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35678999999999999999877421 345679999999999999999999987432
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++... ......++.+++.+... .+.|++|||+|.+ ....++.++
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHHHHHHH
Confidence 22222210 01223355566655433 2469999999988 333444454
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..++. ...++++|++|+.++.+.+++++ |+ ..+.|++|+.++...++...+...... ++.....++..+.|
T Consensus 139 ~~le~-----~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 139 KTLEE-----PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHhC-----CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 44432 23467778888888888899988 87 578999999999999999888765543 22345566776655
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+++.+.+.+..+...+ ...||.+++.+++
T Consensus 211 -~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred -ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 6677777776665543 2348888776654
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=1e-15 Score=162.22 Aligned_cols=206 Identities=24% Similarity=0.269 Sum_probs=138.3
Q ss_pred CCCCCCccccCcHHHHH---HHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQ---ELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..+.+|++++|+++.+. .+...+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 34678999999999885 45554421 123479999999999999999999999999998887532
Q ss_pred hhhhhcchHHHHHHHHHHH-----HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 236 VQMFIGDGAKLVRDAFQLA-----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
.. ..++..+..+ ....+.+|||||+|.+ +...+..|+..++. +.+++|++
T Consensus 89 ~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE~-------g~IiLI~a 143 (725)
T PRK13341 89 GV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVEN-------GTITLIGA 143 (725)
T ss_pred hh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhcC-------ceEEEEEe
Confidence 11 1122222222 1134579999999998 44556666655542 45667766
Q ss_pred eC--CCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc-------CCCC-CCCCHHHHHHHcCCCcHHHHHHHHH
Q 039866 311 TN--RADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK-------MTVH-PDVNFEELARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 311 tn--~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 380 (418)
|+ +...+++++++ |+ ..+.|++++.+++..+++..+.. ..+. ++..+..|+..+.| ..+.+.+++.
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le 219 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALE 219 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 54 33468899998 75 47899999999999999988762 1111 22336677777654 5677777777
Q ss_pred HHHHHHHHhC--CCCccHHHHHHHHHHH
Q 039866 381 EAGMLALRRD--ATEVNHEDFNEGIIQV 406 (418)
Q Consensus 381 ~A~~~A~~~~--~~~It~~d~~~Al~~~ 406 (418)
.|...+.... ...|+.+++.+++...
T Consensus 220 ~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 220 LAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 7664332222 2237888888887663
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=2.4e-15 Score=157.49 Aligned_cols=208 Identities=17% Similarity=0.264 Sum_probs=143.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE---Eccchh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK---LAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~---i~~s~l 235 (418)
..+.+|++|+|++.+++.+...+... +.++.+||+||+|+|||++|+++|+.+.+.-.. -.|..+
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 45678999999999999999988432 345678999999999999999999988653211 012111
Q ss_pred hh---h----hhc-----chHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC
Q 039866 236 VQ---M----FIG-----DGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 299 (418)
Q Consensus 236 ~~---~----~~g-----~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 299 (418)
.. . +.+ .+...++.+.+.+... .+.|++|||+|.+ ....++.|+..|++
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLEE---- 144 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLEE---- 144 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhhc----
Confidence 10 0 001 1133466666666543 3579999999998 34455666666553
Q ss_pred CCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCCCcHHHHHHH
Q 039866 300 SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGAQLKAV 378 (418)
Q Consensus 300 ~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~di~~l 378 (418)
++..+++|++|+.++.+.+++++ |+ ..+.|.+|+.++....+...+....+.- +..+..++..+.| +.+++..+
T Consensus 145 -PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34567788888888999999998 88 4899999999999999988776555442 2235667776665 66777777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHH
Q 039866 379 CVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 379 ~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
+..+...+ ...|+.+++...
T Consensus 220 Lekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 220 AEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHhc----cCCCCHHHHHHH
Confidence 77654432 233777776654
No 113
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.68 E-value=1.4e-15 Score=149.12 Aligned_cols=245 Identities=25% Similarity=0.328 Sum_probs=161.1
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhc-CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhc-
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIG- 241 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g- 241 (418)
..|+||+++++.+..++.....+....... .-.+|+++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 458999999999988876543322111111 1124689999999999999999999999999999999987764 5665
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 039866 242 DGAKLVRDAFQLA------------------------------------------------------------------- 254 (418)
Q Consensus 242 ~~~~~~~~~~~~a------------------------------------------------------------------- 254 (418)
+.+..++.+|+.+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3444444444333
Q ss_pred ------------------------------------------------------------------------HhCCCeEE
Q 039866 255 ------------------------------------------------------------------------KEKSPCII 262 (418)
Q Consensus 255 ------------------------------------------------------------------------~~~~~~vl 262 (418)
+....+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01134699
Q ss_pred EEcCCCcccccCCC-CCCCCCHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEeC----CCCCCChhhhCCCCceeEEE
Q 039866 263 FIDEIDAIGTKRFD-SEVSGDREVQRTMLELLNQLD-----GFSSDDRIKVIAATN----RADILDPALMRSGRLDRKIE 332 (418)
Q Consensus 263 ~iDEid~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~-----~~~~~~~vivI~ttn----~~~~l~~~l~r~~Rf~~~i~ 332 (418)
||||||+++.+... +...+...+|+.|+.+++.-. +.-...++++|++.- .|+.|-|.|.- ||+.++.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 329 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVE 329 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 99999999976532 223345568998888886311 112235788888753 45667788876 9999999
Q ss_pred cCCCCHHHHHHHHH--------HHh---hcCCCC---CCCCHHHHHHHc-------CCCcHHHHHHHHHHHHHHHHHhC-
Q 039866 333 LPHPSEEARARILQ--------IHS---RKMTVH---PDVNFEELARST-------DDFNGAQLKAVCVEAGMLALRRD- 390 (418)
Q Consensus 333 ~~~p~~~~r~~il~--------~~~---~~~~~~---~~~~~~~la~~~-------~g~s~~di~~l~~~A~~~A~~~~- 390 (418)
+.+++.++...||. .+. ....+. .+..+..+|..+ .+.-.+-|+.++.....-+....
T Consensus 330 L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p 409 (441)
T TIGR00390 330 LQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAP 409 (441)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCC
Confidence 99999999988872 121 111111 223355666544 23334677777776665554332
Q ss_pred -----CCCccHHHHHHHHHHHHHhhh
Q 039866 391 -----ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 391 -----~~~It~~d~~~Al~~~~~~~~ 411 (418)
...|+.+.+...+..+..+.+
T Consensus 410 ~~~~~~v~I~~~~V~~~l~~~~~~~D 435 (441)
T TIGR00390 410 DLSGQNITIDADYVSKKLGALVADED 435 (441)
T ss_pred CCCCCEEEECHHHHHhHHHHHHhcCC
Confidence 235888888888877766543
No 114
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.68 E-value=1.2e-15 Score=148.29 Aligned_cols=226 Identities=20% Similarity=0.243 Sum_probs=151.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-------CcEEEEc
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-------ATFLKLA 231 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-------~~~~~i~ 231 (418)
.+...|.+|+|+++++..|...+..| ...++||.||+|||||++|++++..+. .+|. .+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~ 76 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SH 76 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CC
Confidence 45568999999999999998877543 335799999999999999999988762 2332 10
Q ss_pred c-------chhhhhh-------------------hcchHHHH------HHHHHHH---------HhCCCeEEEEcCCCcc
Q 039866 232 G-------PQLVQMF-------------------IGDGAKLV------RDAFQLA---------KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 232 ~-------s~l~~~~-------------------~g~~~~~~------~~~~~~a---------~~~~~~vl~iDEid~l 270 (418)
. +.+.... .|.++..+ ...+... .....++||+||++.+
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 0 0011000 01111110 0111111 1122369999999999
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEeCCCC-CCChhhhCCCCceeEEEcCCCC-HHH
Q 039866 271 GTKRFDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIELPHPS-EEA 340 (418)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~vivI~ttn~~~-~l~~~l~r~~Rf~~~i~~~~p~-~~~ 340 (418)
++..|..|++.++... + ...+.++++|+|.|+.+ .+.++++. ||...+.+..|+ .+.
T Consensus 157 -----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 157 -----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 7788999999887531 1 12245788999999766 69999999 999999999987 589
Q ss_pred HHHHHHHHhhcC--CCC--------CCCC-----------------------HHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 341 RARILQIHSRKM--TVH--------PDVN-----------------------FEELARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 341 r~~il~~~~~~~--~~~--------~~~~-----------------------~~~la~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
+.+|++...... ... .... +..++..+.--+++--..+++.|...|.
T Consensus 224 e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 224 RVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 999988753210 000 0001 1122223332356666778888999999
Q ss_pred HhCCCCccHHHHHHHHHHHHHhhh
Q 039866 388 RRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 388 ~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
.+++..|+.+|+..+..-+...+-
T Consensus 304 l~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 304 FEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999988877543
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=8.1e-16 Score=167.10 Aligned_cols=169 Identities=22% Similarity=0.327 Sum_probs=133.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+-.+++++|+++.+..+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 345788999999998888886632 234579999999999999999999987 678899
Q ss_pred Eccchhh--hhhhcchHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 230 LAGPQLV--QMFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 230 i~~s~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
++++.+. .+|.|+.+..++.++..+.. ..++||||||+|.+.+.+.. .+..+.++.|...+. ++.+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l~-------~g~l~ 309 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RGELH 309 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchhh-------cCCCe
Confidence 9888876 45788889999999987644 56789999999999865432 223445565554443 46889
Q ss_pred EEEEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCC
Q 039866 307 VIAATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTV 354 (418)
Q Consensus 307 vI~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~ 354 (418)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.....+..
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 999999876 48999999 996 6889999999999999877765443
No 116
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.67 E-value=1.2e-15 Score=148.19 Aligned_cols=220 Identities=19% Similarity=0.286 Sum_probs=142.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-------Cc--EEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-------AT--FLKL 230 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-------~~--~~~i 230 (418)
.+..|.+|+|++.+++.+.-.+..+ ..+++||+||||||||++|++++..+. ++ +..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4567999999999999887644211 225799999999999999999999872 21 1111
Q ss_pred cc-chh--------h---------------hhhhcch--HHH--------HHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q 039866 231 AG-PQL--------V---------------QMFIGDG--AKL--------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 231 ~~-s~l--------~---------------~~~~g~~--~~~--------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 276 (418)
.+ .++ . +..+|.. ... ..+.+. ....++||+||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~---~A~~GiL~lDEInrl------ 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLA---RANRGYLYIDEVNLL------ 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceE---EcCCCeEEecChHhC------
Confidence 11 000 0 0012210 000 001111 112359999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEeCCCC-CCChhhhCCCCceeEEEcCCCCH-HHHHHHHH
Q 039866 277 SEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIELPHPSE-EARARILQ 346 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~vivI~ttn~~~-~l~~~l~r~~Rf~~~i~~~~p~~-~~r~~il~ 346 (418)
++..+..|++.++... + .....++++|+|+|+.+ .++++++. ||...+.++.|.. ++|.+|+.
T Consensus 141 -----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 141 -----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred -----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 6788999999987542 1 12345789999999755 68999999 9999999998876 88899988
Q ss_pred HHhhcCC----C------CCCCC--------------------HH---HHHHHcC-CCcHHHHHHHHHHHHHHHHHhCCC
Q 039866 347 IHSRKMT----V------HPDVN--------------------FE---ELARSTD-DFNGAQLKAVCVEAGMLALRRDAT 392 (418)
Q Consensus 347 ~~~~~~~----~------~~~~~--------------------~~---~la~~~~-g~s~~di~~l~~~A~~~A~~~~~~ 392 (418)
.....-. . ..... .. .++..+. .-..+++. +++.|...|...++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7532110 0 00000 11 1222222 11234555 889999999999999
Q ss_pred CccHHHHHHHHHHHHHh
Q 039866 393 EVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 393 ~It~~d~~~Al~~~~~~ 409 (418)
.|+.+|+..+..-+...
T Consensus 293 ~V~~~Di~~~~~~vl~h 309 (334)
T PRK13407 293 AVGRSHLRSVATMALSH 309 (334)
T ss_pred eeCHHHHHHHHHHhhhh
Confidence 99999998888666553
No 117
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=2.6e-15 Score=163.16 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=148.9
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 230 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i 230 (418)
.-.++.++|.+..++.+.+.+.. +..++++|+||||||||++|+.+|..+ +.+++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688999999999999997642 345689999999999999999999976 4789999
Q ss_pred ccchhh--hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 039866 231 AGPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 308 (418)
Q Consensus 231 ~~s~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI 308 (418)
+++.+. .+|.|+.+..++.+++.+....++||||||+|.+.+.+.. .++.+..+.|...+. ++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~~a~lLkp~l~-------rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAIDAANILKPALA-------RGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCcccHHHHhHHHHh-------CCCcEEE
Confidence 998876 4678999999999999998878899999999999865432 222344555554444 3678899
Q ss_pred EEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc----CCCC-CCCCHHHHHHHcCCCc-----HH
Q 039866 309 AATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK----MTVH-PDVNFEELARSTDDFN-----GA 373 (418)
Q Consensus 309 ~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~-~~~~~~~la~~~~g~s-----~~ 373 (418)
++|+..+ ..++++.+ ||. .|.++.|+.++...|++..... ..+. ++..+..++..+.+|. |.
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCch
Confidence 9998764 46899999 995 6799999999998888765432 1221 2233555566665554 34
Q ss_pred HHHHHHHHHHHHHH
Q 039866 374 QLKAVCVEAGMLAL 387 (418)
Q Consensus 374 di~~l~~~A~~~A~ 387 (418)
....++.+|+....
T Consensus 389 kaidlld~a~a~~~ 402 (821)
T CHL00095 389 KAIDLLDEAGSRVR 402 (821)
T ss_pred HHHHHHHHHHHHHH
Confidence 55567777665543
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.7e-15 Score=152.10 Aligned_cols=209 Identities=20% Similarity=0.258 Sum_probs=140.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-------EEE-E
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-------FLK-L 230 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~-------~~~-i 230 (418)
..+.+|++++|++.+++.+...+... ..++.+|||||+|+|||++|+.+|..+++. +-. .
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 35678999999999999999988432 345568999999999999999999987641 110 0
Q ss_pred ccchhhh-----hh-h----cchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh
Q 039866 231 AGPQLVQ-----MF-I----GDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 296 (418)
Q Consensus 231 ~~s~l~~-----~~-~----g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 296 (418)
+|..+.. -+ + ..+-..++.+.+.+.. ..+.|++|||+|.+ ....++.|+..++.
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk~LEe- 145 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLKTLEE- 145 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHHHHhc-
Confidence 1111100 00 0 0112234455555443 23579999999998 33445555555543
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCCCcHHHH
Q 039866 297 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDFNGAQL 375 (418)
Q Consensus 297 ~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~di 375 (418)
++..+++|++|+.++.+.+++.+ |+. .+.|++|+.++...++...+....+.- +..+..++..+.| +.+++
T Consensus 146 ----pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~a 217 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDA 217 (486)
T ss_pred ----CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 23456677777778888889988 874 799999999999999998887666542 2345667776665 57777
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 376 KAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 376 ~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
.+++..+...+ ...||.+++..++
T Consensus 218 l~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 218 ASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 78877765442 3468887777654
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2e-15 Score=157.62 Aligned_cols=202 Identities=20% Similarity=0.262 Sum_probs=143.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++++++.|...+... +.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 35678999999999999999987432 345678999999999999999999998542
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.+++.. ..+-..++.+.+.+.. ..+.|++|||+|.| +...++.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHHHHH
Confidence 22222111 0112335555555542 23469999999999 445667777
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..|++ +..++++|++|+.++.+.+++++ |+ ..+.|..++.++....+...+....+. .+..+..++..+.|
T Consensus 141 k~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 141 KTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 77764 34577888888888999999998 87 588999999999888888877765544 23446677777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
+.+++.+++..+..++ ...|+.+|+...
T Consensus 213 -~lr~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 213 -SMRDSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred -CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 5677777776655443 234777776554
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.67 E-value=8.7e-16 Score=142.59 Aligned_cols=190 Identities=22% Similarity=0.269 Sum_probs=131.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------EEEEcc
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------FLKLAG 232 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------~~~i~~ 232 (418)
..+.+|+++.|++.+++.+...+.. +...++|||||||||||+.|+++|+++.++ +...+.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 4556899999999999999998843 122369999999999999999999998652 233344
Q ss_pred chhhhhhhcchHHHHHHHHHHHHh---------CC-CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLAKE---------KS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD 302 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a~~---------~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 302 (418)
|...+.-++. ..+ .-|..... .+ +.|++|||.|.| ..+.|..|...++. ..
T Consensus 97 SderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~-----~s 157 (346)
T KOG0989|consen 97 SDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED-----FS 157 (346)
T ss_pred cccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc-----cc
Confidence 4332221111 011 11222211 11 269999999999 55778888877764 23
Q ss_pred CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHH
Q 039866 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVE 381 (418)
Q Consensus 303 ~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 381 (418)
..+.+|..+|..+.+.+.+.+ |+. .+.|+....+.....++..+.+.+++ ++..+..++..++| +-++....++.
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqs 233 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQS 233 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 467889999999999999998 884 78899998888888888888766665 33447778887766 44444444444
Q ss_pred HHH
Q 039866 382 AGM 384 (418)
Q Consensus 382 A~~ 384 (418)
+..
T Consensus 234 ls~ 236 (346)
T KOG0989|consen 234 LSL 236 (346)
T ss_pred hhc
Confidence 433
No 121
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=2.8e-15 Score=151.81 Aligned_cols=192 Identities=17% Similarity=0.253 Sum_probs=131.3
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchH-HHHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGA-KLVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~-~~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
.++++||||||+|||+|++++++++ +..++++++.++...+..... +.... |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3469999999999999999999986 457889998887766543211 11112 2222223567999999998853
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhCCCCce--eEEEcCCCCHHHHHHHHHH
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIELPHPSEEARARILQI 347 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~ 347 (418)
. ...+..++.+++.+.. .+..+||++.+.|.. +.+.+.+ ||. ..+.+.+|+.+.|..|++.
T Consensus 209 ~---------~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 209 K---------TGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred c---------HHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHH
Confidence 2 2345556666665432 233445555556554 5577887 774 4889999999999999998
Q ss_pred HhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 039866 348 HSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 348 ~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
.+....+. ++..+..|+....| +.++|..++......+...+ ..||.+.+.++++.+.
T Consensus 275 ~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 275 MLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 88754333 23346777777665 67888888887766665554 4588888888888763
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.66 E-value=6.1e-15 Score=160.79 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=148.5
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+-.++.++|+++.+..+.+.+.. +..++++|+||||||||++++.+|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 455788999999999888886632 244578999999999999999999975 567888
Q ss_pred Eccchhh--hhhhcchHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 230 LAGPQLV--QMFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 230 i~~s~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
++++.+. .+|.|+.+..++.++..+.. ..+.||||||+|.+.+.+.. .+..+..+.|...+ ..+.+.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~~d~~~~Lk~~l-------~~g~i~ 304 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGAMDAGNMLKPAL-------ARGELH 304 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cchhHHHHHhchhh-------hcCceE
Confidence 8888775 46788888889999988865 35899999999999764321 12233444443333 346789
Q ss_pred EEEEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCC-----CHHHHHHHcCCCc-----
Q 039866 307 VIAATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV-----NFEELARSTDDFN----- 371 (418)
Q Consensus 307 vI~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~~~g~s----- 371 (418)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.....+.....+ .+...+..+.+|.
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999999764 47999999 995 68999999999999999887766544332 3444455555443
Q ss_pred HHHHHHHHHHHHHHHH
Q 039866 372 GAQLKAVCVEAGMLAL 387 (418)
Q Consensus 372 ~~di~~l~~~A~~~A~ 387 (418)
|.....++.+|+....
T Consensus 382 PdkAidlld~a~a~~~ 397 (852)
T TIGR03346 382 PDKAIDLIDEAAARIR 397 (852)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4456667777766543
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=5.3e-15 Score=151.15 Aligned_cols=202 Identities=19% Similarity=0.224 Sum_probs=142.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+.+|++|+|++.+++.+...+... +.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 35678999999999999999887422 345568999999999999999999987321
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++.+.- .+-..++.+...... ....|++|||+|.+ ..+.++.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHH
Confidence 222221110 012334444444322 23469999999999 556677777
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..+++ .+..+.+|++|+.+..+.+++++ |+ ..+.|.+++.++....+...+...+.. .+..+..++..+.|
T Consensus 139 K~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 139 KTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77765 23456777777888999999999 86 589999999999999888887765543 23446677776665
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
+.+++.+++..|...+ ...||.+++.+.
T Consensus 211 -dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 211 -SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred -cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7888888888777654 235666666544
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4.8e-15 Score=153.61 Aligned_cols=209 Identities=17% Similarity=0.198 Sum_probs=140.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-------EEEE-
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-------FLKL- 230 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~-------~~~i- 230 (418)
..+.+|++|+|++.+++.+...+... +.++.+|||||+|+|||++|+++|+.+.+. +-.+
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 35678999999999999999988432 345579999999999999999999988542 1111
Q ss_pred ccchhhh-------hhhcc---hHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh
Q 039866 231 AGPQLVQ-------MFIGD---GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 296 (418)
Q Consensus 231 ~~s~l~~-------~~~g~---~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 296 (418)
+|..+.. .+-|. .-..++.+.+.+. ...+.|++|||+|.+ +...++.|+..++.
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLLK~LEe- 145 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALLKTIEE- 145 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHHHhhcc-
Confidence 0000000 00111 1223444443333 234579999999998 34445555544442
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHH
Q 039866 297 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQL 375 (418)
Q Consensus 297 ~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di 375 (418)
++..+++|++|+.+..+.+++++ |+. .+.|.+++.++...+++..+....+. .+..+..++..+.| +.+++
T Consensus 146 ----pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 146 ----PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred ----CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 34577788888878889999998 884 78999999999999998887655543 23346667776665 67788
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 376 KAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 376 ~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
.+++..+...+ ...|+.+++..++
T Consensus 218 lslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 218 YTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 88887665443 2457777766654
No 125
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.66 E-value=1.6e-15 Score=143.46 Aligned_cols=212 Identities=27% Similarity=0.370 Sum_probs=136.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc---EEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~---~~~i~~s~l 235 (418)
..+.++++.+||++.+.. ...+...+.. ....+++|+||||||||+||+.++.....+ |+.++...
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 345567777787776654 1111111111 233479999999999999999999987554 55555432
Q ss_pred hhhhhcchHHHHHHHHHHHHh-----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 236 VQMFIGDGAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
.....++.+|+.+.. ....||||||||++ +...|.+++-.++ .+.+++|++
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~I~lIGA 256 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGDITLIGA 256 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCceEEEec
Confidence 233456777777754 34579999999998 3344555554444 366778876
Q ss_pred e--CCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC--------CCC------CCCCHHHHHHHcCCCcHHH
Q 039866 311 T--NRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM--------TVH------PDVNFEELARSTDDFNGAQ 374 (418)
Q Consensus 311 t--n~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--------~~~------~~~~~~~la~~~~g~s~~d 374 (418)
| |+.-.++.+|++ |+ .++.+..++.+....|+.+-...+ ++. .+..++.++..++|-..+.
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 5 444578999999 87 578888888888888887643311 111 1223677888888866665
Q ss_pred HHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHH
Q 039866 375 LKAVCVEAGMLALRRD---ATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 375 i~~l~~~A~~~A~~~~---~~~It~~d~~~Al~~~~~ 408 (418)
+..+-..+.+.+.+.+ +..++.+|+.+++..-..
T Consensus 334 LN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~ 370 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHI 370 (554)
T ss_pred HHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccc
Confidence 5544333334444333 457899999998876543
No 126
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.65 E-value=2.5e-15 Score=147.58 Aligned_cols=244 Identities=25% Similarity=0.321 Sum_probs=160.3
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcC-CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhc-
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIG- 241 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g- 241 (418)
..|+|++.+++.+..++.....+..+..... -.+|.++||+||||||||++|+++|..++.+|+.++++++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4589999999999888754322211100000 013578999999999999999999999999999999998875 5777
Q ss_pred chHHHHHHHHHHHH------------------------------------------------------------------
Q 039866 242 DGAKLVRDAFQLAK------------------------------------------------------------------ 255 (418)
Q Consensus 242 ~~~~~~~~~~~~a~------------------------------------------------------------------ 255 (418)
+.+..++.++..|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 33444555444440
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 039866 256 ------------------------------------------------------------------------EKSPCIIF 263 (418)
Q Consensus 256 ------------------------------------------------------------------------~~~~~vl~ 263 (418)
....+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01336999
Q ss_pred EcCCCcccccCCC-CCCCCCHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEeC----CCCCCChhhhCCCCceeEEEc
Q 039866 264 IDEIDAIGTKRFD-SEVSGDREVQRTMLELLNQLD-----GFSSDDRIKVIAATN----RADILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 264 iDEid~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~-----~~~~~~~vivI~ttn----~~~~l~~~l~r~~Rf~~~i~~ 333 (418)
|||||+++....+ +...+...+|+.|+.+++.-. +.-...++++||+.- .|+.|-|.|.. ||+.++.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 9999999976532 223344568998888886311 112235788887753 45667799976 99999999
Q ss_pred CCCCHHHHHHHHH----HHhhc-------CCCC---CCCCHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHhC--
Q 039866 334 PHPSEEARARILQ----IHSRK-------MTVH---PDVNFEELARSTD-------DFNGAQLKAVCVEAGMLALRRD-- 390 (418)
Q Consensus 334 ~~p~~~~r~~il~----~~~~~-------~~~~---~~~~~~~la~~~~-------g~s~~di~~l~~~A~~~A~~~~-- 390 (418)
.+++.++...||. ...++ ..+. .+..+..+|..+. +.-.+-|+.++.....-.....
T Consensus 333 ~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 333 DALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPD 412 (443)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCC
Confidence 9999999988873 12211 1111 2233566665442 3334677777777665554332
Q ss_pred ----CCCccHHHHHHHHHHHHHhh
Q 039866 391 ----ATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 391 ----~~~It~~d~~~Al~~~~~~~ 410 (418)
...|+.+.+...+..+..+.
T Consensus 413 ~~~~~v~I~~~~V~~~l~~l~~~~ 436 (443)
T PRK05201 413 MSGETVTIDAAYVDEKLGDLVKDE 436 (443)
T ss_pred CCCCEEEECHHHHHHHHHHHHhcC
Confidence 23578888888777776544
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.65 E-value=1.5e-14 Score=152.00 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=142.8
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+.+|++++|++.+++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 356789999999999988776532 234579999999999999999998765 357899
Q ss_pred Eccchhh-------hhhhcchHHH----HHHHHH----------HHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 230 LAGPQLV-------QMFIGDGAKL----VRDAFQ----------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 230 i~~s~l~-------~~~~g~~~~~----~~~~~~----------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
++|..+. ..++|..... .+..+. .......++|||||++.| +...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHH
Confidence 9987642 1122211100 000010 011223469999999999 7788888
Q ss_pred HHHHHHhhcC-----------------------CCCCCCeEEEEE-eCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHH
Q 039866 289 MLELLNQLDG-----------------------FSSDDRIKVIAA-TNRADILDPALMRSGRLDRKIELPHPSEEARARI 344 (418)
Q Consensus 289 l~~ll~~~~~-----------------------~~~~~~vivI~t-tn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~i 344 (418)
|+.+++.... .....++++|++ |+.++.+++++++ ||. .+.|++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 8888875320 011224566654 5567889999988 986 678999999999999
Q ss_pred HHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHH
Q 039866 345 LQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--------DATEVNHEDFNEGIIQV 406 (418)
Q Consensus 345 l~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~--------~~~~It~~d~~~Al~~~ 406 (418)
++..+...... .+.....++.++ +.++...+++..+...+..+ ....|+.+|+.+++..-
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 99988765432 222344444443 34555445554444333211 23479999999998754
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.1e-14 Score=151.59 Aligned_cols=210 Identities=20% Similarity=0.215 Sum_probs=145.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc-------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA------- 231 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~------- 231 (418)
..+.+|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+++|+.+.+.....+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 34578999999999999999987432 45668999999999999999999999865422111
Q ss_pred cc------hhhhh----h--h----cchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHH
Q 039866 232 GP------QLVQM----F--I----GDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291 (418)
Q Consensus 232 ~s------~l~~~----~--~----g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 291 (418)
|. .+... + + ..+-..++.+.+.+... .+.|++|||+|.+ +...++.|+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~naLLK 154 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFNALLK 154 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHHHHHH
Confidence 11 01000 0 0 01123456666665433 3579999999999 4445566666
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCCC
Q 039866 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDDF 370 (418)
Q Consensus 292 ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~ 370 (418)
.|++ ....+++|++|+.++.+.+.+++ |+ ..+.|..|+.++....+...+......- +..+..++..+.|
T Consensus 155 tLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 155 TLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 6654 23467777778878888889988 87 5899999999999999988887655442 2345666776655
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
+.+++.+++..+.... ...||.+++...+.
T Consensus 226 dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 226 SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 6788888887665432 34688888887654
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9.4e-15 Score=145.40 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=138.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh--
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV-- 236 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~-- 236 (418)
..+.+|++++|++.+++.+...+... ..++++|||||||+|||++|+++++.+.++.....+..+.
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 45678999999999999999888432 3456899999999999999999999875422111110000
Q ss_pred ----hhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 039866 237 ----QMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 308 (418)
Q Consensus 237 ----~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI 308 (418)
..........++.+++.+.. ..+.|++|||+|.+. ...++.++..++. ....+++|
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~-----~~~~~~~I 142 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE-----PPAHAIFI 142 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC-----CCCceEEE
Confidence 00001112345556665543 235699999999883 3334444444432 23456677
Q ss_pred EEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 309 AATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 309 ~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
++++.+..+.+++.+ |+ ..+.+++|+.++...++...+...+.. ++..+..++..+.| +.+.+.+.+.....++
T Consensus 143 l~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~- 217 (367)
T PRK14970 143 LATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC- 217 (367)
T ss_pred EEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-
Confidence 777778888899988 77 478999999999999888877765543 33456677776654 6666667666655443
Q ss_pred HhCCCCccHHHHHHHHH
Q 039866 388 RRDATEVNHEDFNEGII 404 (418)
Q Consensus 388 ~~~~~~It~~d~~~Al~ 404 (418)
+.. ||.+++...+.
T Consensus 218 --~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 --GKN-ITRQAVTENLN 231 (367)
T ss_pred --CCC-CCHHHHHHHhC
Confidence 222 77777665543
No 130
>PRK08727 hypothetical protein; Validated
Probab=99.64 E-value=2.2e-14 Score=133.60 Aligned_cols=179 Identities=22% Similarity=0.261 Sum_probs=120.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 276 (418)
..++|+||+|||||+++.++++++ +....+++..++... +...+.... .+.+|+|||++.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~--- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQ--- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---
Confidence 459999999999999999998875 556666765544322 223344443 3359999999988532
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-CCCCC---ChhhhCCCCc--eeEEEcCCCCHHHHHHHHHHHhh
Q 039866 277 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN-RADIL---DPALMRSGRL--DRKIELPHPSEEARARILQIHSR 350 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn-~~~~l---~~~l~r~~Rf--~~~i~~~~p~~~~r~~il~~~~~ 350 (418)
...+..++.+++..... +..+|+|+| .|..+ .|++.+ || ...+.+++|+.+++..+++.++.
T Consensus 109 ------~~~~~~lf~l~n~~~~~----~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 109 ------REDEVALFDFHNRARAA----GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred ------hHHHHHHHHHHHHHHHc----CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 23456677777765321 223555555 55544 799998 86 45899999999999999998765
Q ss_pred cCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 351 KMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 351 ~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
...+. ++..+..|+..+.| +.+.+.+++......+...+ ..||...+.+.+..
T Consensus 177 ~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 177 RRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 43333 23346677777664 45566666766655455444 47999998887753
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.4e-14 Score=147.01 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=135.7
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-------------
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------- 226 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------- 226 (418)
.+.+|++|+|++.+++.+...+... +.++.+|||||||+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 4578999999999999998888432 345679999999999999999999987442
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.+++... . +-..++.+.+.+. ...+.|++|||+|.+ ..+.++.|+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~~n~LL 142 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEAFNSLL 142 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHHHHHHH
Confidence 222221110 0 1122333322222 245679999999998 344556666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
..++. ..+.+++|++|+.+..+.+++++ |+ ..+.|+.++.++....+...+...+.. ++..+..++..+.|
T Consensus 143 k~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 143 KTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66554 23467777888888889999998 88 478999999999998888877655443 23346677777755
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+.+.+.+.+....... + ..|+.+++..++
T Consensus 215 -dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 215 -SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred -CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 5566666665543321 2 337776665543
No 132
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.64 E-value=1.3e-14 Score=141.48 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=136.7
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKL 230 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i 230 (418)
.+...+.+|++++|++.++..+..++... ...+++|+||||||||++++++++.+. ..++.+
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 33445678999999999999999887321 122589999999999999999999873 345555
Q ss_pred ccchhhhhhhcchHHHHH-HHHHHHHh-----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC
Q 039866 231 AGPQLVQMFIGDGAKLVR-DAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR 304 (418)
Q Consensus 231 ~~s~l~~~~~g~~~~~~~-~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 304 (418)
++++... ...++ .+...+.. ..+.+|+|||+|.+ ..+.+..|..+++.. ..+
T Consensus 75 ~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~-----~~~ 132 (319)
T PRK00440 75 NASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY-----SQN 132 (319)
T ss_pred ccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC-----CCC
Confidence 5443211 11111 11222221 23469999999998 334556666666532 234
Q ss_pred eEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHH
Q 039866 305 IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAG 383 (418)
Q Consensus 305 vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~ 383 (418)
+.+|+++|.+..+.+++.+ |+. .+.|++|+.++...+++..+...... .+..+..++..+.| +.+.+.+.+..+.
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 5667778877778788888 775 68999999999999999888765543 33456777777655 4555555555443
Q ss_pred HHHHHhCCCCccHHHHHHHHH
Q 039866 384 MLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 384 ~~A~~~~~~~It~~d~~~Al~ 404 (418)
.. ...||.+++..++.
T Consensus 209 ~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 209 AT-----GKEVTEEAVYKITG 224 (319)
T ss_pred Hc-----CCCCCHHHHHHHhC
Confidence 32 35688888877653
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.5e-15 Score=148.20 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=139.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE-E---------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-L--------- 228 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~-~--------- 228 (418)
..+..|++|+|++.+++.|...+... +.++.+||+||||+|||++|+++|+.+.+.- .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 45678999999999999998877422 3456799999999999999999999986521 0
Q ss_pred EEccchh------h-------hhhhcc---hHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 229 KLAGPQL------V-------QMFIGD---GAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 229 ~i~~s~l------~-------~~~~g~---~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
.-.|..+ . ..+.|. ....++.+.+.+.. ....|++|||+|.+ +...++.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-----------~~~~~~~ 146 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-----------SIAAFNA 146 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------CHHHHHH
Confidence 0011111 0 001111 12344444444432 23469999999998 3344555
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHc
Q 039866 289 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARST 367 (418)
Q Consensus 289 l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 367 (418)
|+..++. ....+++|++++.+..+.+++.+ |+. .+.|++++.++....+...+...... .+..+..++..+
T Consensus 147 LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 147 FLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5555542 23456666676777888888887 774 78999999999888888877654433 233466677776
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q 039866 368 DDFNGAQLKAVCVEAGMLALR-RDATEVNHEDFNEGI 403 (418)
Q Consensus 368 ~g~s~~di~~l~~~A~~~A~~-~~~~~It~~d~~~Al 403 (418)
.| +.+.+.+.+..+..++.. .....|+.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 55 677777777776655432 234578888776654
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=99.64 E-value=2.9e-14 Score=132.82 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=124.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~ 275 (418)
.++++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcC---
Confidence 4579999999999999999999865 5678888887765431 1233334333 4999999998743
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhh
Q 039866 276 DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIELPHPSEEARARILQIHSR 350 (418)
Q Consensus 276 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~ 350 (418)
.+..+..|+.+++.... .+..++++++..|.. ..|.+++ ||. .++.+.+|+.+++..+++..+.
T Consensus 112 ------~~~~~~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 112 ------KADWEEALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ------ChHHHHHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 23456678888876432 234556666555543 3688988 874 5788899999999999996665
Q ss_pred cCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 351 KMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 351 ~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
...+. ++.....++....+ +.+.+..++......+...+ ..||..-+++++.
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 44332 23446677776664 77888888877665554433 5589888887763
No 135
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.9e-14 Score=148.13 Aligned_cols=191 Identities=18% Similarity=0.266 Sum_probs=134.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 274 (418)
+.++|||++|+|||+|++++++++ +..++++++.++...+...........|... -..+.+|+||||+.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC-
Confidence 359999999999999999999976 5678999998888766543222111223222 223579999999998543
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-C---CCChhhhCCCCce--eEEEcCCCCHHHHHHHHHHH
Q 039866 275 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-D---ILDPALMRSGRLD--RKIELPHPSEEARARILQIH 348 (418)
Q Consensus 275 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~-~---~l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~ 348 (418)
...+..|+.+++.+... ++. ||+|+|.+ . .+++.|.+ ||. .++.+..|+.+.|..||+.+
T Consensus 393 --------e~tqeeLF~l~N~l~e~---gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 393 --------ESTQEEFFHTFNTLHNA---NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred --------HHHHHHHHHHHHHHHhc---CCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 34566777788765432 223 44566643 3 57889998 774 48899999999999999998
Q ss_pred hhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 349 SRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 349 ~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
+....+. ++..+..|+....+ +.++|..++......+...+ ..||.+.+.+.++.+..
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 8766555 33446677777654 67888888887766665544 45888888888877644
No 136
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.62 E-value=1.3e-14 Score=141.19 Aligned_cols=220 Identities=20% Similarity=0.238 Sum_probs=146.2
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-------CCcEE-------
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-------NATFL------- 228 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-------~~~~~------- 228 (418)
.|..|+|+++++..+.-.+..| ...+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4788999999999987665432 24579999999999999999999876 22221
Q ss_pred --EEccch-------------------hhh-----hhhcchH--HH--------HHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 229 --KLAGPQ-------------------LVQ-----MFIGDGA--KL--------VRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 229 --~i~~s~-------------------l~~-----~~~g~~~--~~--------~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
..+|.. +.. .+.|... .. ...++. ....++|||||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhC--
Confidence 000110 000 1122110 00 001111 122369999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEeCCCC-CCChhhhCCCCceeEEEcCCCCH-HHHH
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIELPHPSE-EARA 342 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~vivI~ttn~~~-~l~~~l~r~~Rf~~~i~~~~p~~-~~r~ 342 (418)
++..|..|+++++... + ...+.++++|+|+|+.+ .++++++. ||...+.++.|.. +++.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 6788999999887532 1 11234788999998765 79999999 9999999998875 8888
Q ss_pred HHHHHHhhcC----C----CC-----------------CC-----CC---HHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 039866 343 RILQIHSRKM----T----VH-----------------PD-----VN---FEELARSTDDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 343 ~il~~~~~~~----~----~~-----------------~~-----~~---~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 389 (418)
+|++...... . +. .+ .. +..++..+..-+.+.-..+++.|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 8887743210 0 00 00 01 222233333335566778889999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhhh
Q 039866 390 DATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 390 ~~~~It~~d~~~Al~~~~~~~~ 411 (418)
++..|+.+|+..+..-+...+-
T Consensus 293 GR~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999988877543
No 137
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.62 E-value=1.8e-15 Score=150.74 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=139.7
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 236 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~ 236 (418)
...+|++|+|.+.++..+.+.+... ...+.+|||.|.+||||..+|+++++.. +.||+.+||..+.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 4468999999999999998877432 2456689999999999999999999977 6899999997654
Q ss_pred hh-----hhcchHH--------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--CCCC
Q 039866 237 QM-----FIGDGAK--------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSS 301 (418)
Q Consensus 237 ~~-----~~g~~~~--------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~ 301 (418)
.. ++|...+ ....+|+.|.. +.||||||..| +...|..|+++|++-. ...+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 43 2333221 12345555544 49999999999 7789999999998632 2222
Q ss_pred ----CCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHhh----cCCCC-CCCCHH
Q 039866 302 ----DDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHSR----KMTVH-PDVNFE 361 (418)
Q Consensus 302 ----~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~~----~~~~~-~~~~~~ 361 (418)
..++.||+|||+. ..|...|.= |+. ++.+..|+..+|.+ +...++. .++-. ..+..+
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 2378999999963 234444433 442 77777888777754 3344443 23222 123333
Q ss_pred HHHH-HcCCCcH--HHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 362 ELAR-STDDFNG--AQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 362 ~la~-~~~g~s~--~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
.++. ..+.|.| ++|++++.+|...+- ....|+.+|+.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 3322 1223444 899999999887442 33335555554
No 138
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.62 E-value=4.2e-14 Score=133.64 Aligned_cols=132 Identities=24% Similarity=0.263 Sum_probs=105.2
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------CCCCChhhhCCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------ADILDPALMRSGR 326 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~------------~~~l~~~l~r~~R 326 (418)
|+||||||+|.| +-++..-|...++. . ---++|++||+ |.-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs--e----~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES--E----LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc--c----cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 679999999998 66666666666552 1 12368888886 6678889988 8
Q ss_pred ceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 327 LDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 327 f~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
+ .+|...+++.++.++|++..+....+. ++..++.|+.....-|-+-..+|+.-|...|.++++..|..+|+.+|..-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 7 578888999999999999998866555 44557888887777788888899999999999999999999999999877
Q ss_pred HHHhh
Q 039866 406 VQAKK 410 (418)
Q Consensus 406 ~~~~~ 410 (418)
....+
T Consensus 432 F~D~k 436 (450)
T COG1224 432 FLDVK 436 (450)
T ss_pred HhhHH
Confidence 66533
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=3.3e-14 Score=143.81 Aligned_cols=193 Identities=17% Similarity=0.277 Sum_probs=127.7
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 276 (418)
++++||||+|+|||+|++++++.+ +..++++++..+...+...........|.... ..+.+|+|||++.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---
Confidence 569999999999999999999976 67888998877765543222111111233222 34579999999998532
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC---CCChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhhc
Q 039866 277 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---ILDPALMRSGRLD--RKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~---~l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
...+..++.+++.+.. .+..+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 218 ------~~~qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 218 ------GATQEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ------hhhHHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 2345667777765432 12344444444443 56789998 885 69999999999999999998876
Q ss_pred CCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHH-HHHHHh-CCCCccHHHHHHHHHHHHH
Q 039866 352 MTVH-PDVNFEELARSTDDFNGAQLKAVCVEAG-MLALRR-DATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 352 ~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~-~~A~~~-~~~~It~~d~~~Al~~~~~ 408 (418)
..+. ++..+..++....+ +.+.+...+...+ ..|... ....||.+++.++++.+..
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 6544 23345567776665 4556666555543 122222 2356899999999887643
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=5.5e-14 Score=146.61 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=139.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE---------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK--------- 229 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~--------- 229 (418)
..+.+|++|+|++.+++.+...+... +-++++||+||+|||||++|+.+|+.+.+.-..
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 35678999999999999998877422 345579999999999999999999998663100
Q ss_pred -Eccchh---h---h-------hhhcc---hHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 230 -LAGPQL---V---Q-------MFIGD---GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 230 -i~~s~l---~---~-------~~~g~---~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
-.|..+ . . .+.|. ....++.+.+.+. ...+.|++|||+|.+ ....++.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a~na 146 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAAFNA 146 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHHHHH
Confidence 111111 0 0 01111 1234445544442 223469999999998 3344555
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHc
Q 039866 289 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARST 367 (418)
Q Consensus 289 l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 367 (418)
|+..|++ ....+++|++|+.+..+.+++.+ |. ..+.|..++.++....+...+...... .+..+..++..+
T Consensus 147 LLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 147 FLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 6555554 23456666677777888899988 77 589999999999888888777654433 233466777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q 039866 368 DDFNGAQLKAVCVEAGMLALR-RDATEVNHEDFNEGI 403 (418)
Q Consensus 368 ~g~s~~di~~l~~~A~~~A~~-~~~~~It~~d~~~Al 403 (418)
.| +.+++.+.+.....++.. .....||.+++.+.+
T Consensus 219 ~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 219 QG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred CC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 65 566666666655444311 124567777776654
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.60 E-value=5.6e-14 Score=128.54 Aligned_cols=195 Identities=18% Similarity=0.275 Sum_probs=135.3
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
.....+.+++++|.+.+++.|.+.....+.. .|.+++||+|++|||||+++|++..+. +..++.+...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3355678999999999999999887655443 578899999999999999999999876 6778888766
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
++.. +..+++..+.. .+-|||+|++.-= ........|..+|+..- ...+.|+++.+|||
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe----------~~d~~yk~LKs~LeGgl-e~~P~NvliyATSN 149 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLSFE----------EGDTEYKALKSVLEGGL-EARPDNVLIYATSN 149 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCCCC----------CCcHHHHHHHHHhcCcc-ccCCCcEEEEEecc
Confidence 5532 33455555533 3579999987411 12223456666666432 23467999999999
Q ss_pred CCCCCChh---------------------hhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCH----HHHHHH
Q 039866 313 RADILDPA---------------------LMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD-VNF----EELARS 366 (418)
Q Consensus 313 ~~~~l~~~---------------------l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~----~~la~~ 366 (418)
+-..++.. +--..||...+.|.+|+.++-.+|++.++....+.-+ ..+ ...|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 74332211 1112499999999999999999999999987766532 111 223334
Q ss_pred cCCCcHHHHHHHHH
Q 039866 367 TDDFNGAQLKAVCV 380 (418)
Q Consensus 367 ~~g~s~~di~~l~~ 380 (418)
..|.||+-..+.+.
T Consensus 230 rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 230 RGGRSGRTARQFID 243 (249)
T ss_pred cCCCCHHHHHHHHH
Confidence 45667766666554
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=7.8e-14 Score=146.17 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=129.7
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE----Eccch-
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK----LAGPQ- 234 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~----i~~s~- 234 (418)
.+..|++++|++.+++.|...+... +-+.++||+||+|+|||++|+++|+.+.+.... -.|..
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 4578999999999999999887432 234479999999999999999999998653110 01110
Q ss_pred -------------hh--hhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh
Q 039866 235 -------------LV--QMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 235 -------------l~--~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 295 (418)
+. ....+.....++.+.+.+.. ....|++|||+|.| ..+.++.|+..+++
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLLK~LEe 147 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALLKTLEE 147 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHHHHHhc
Confidence 00 00011223456667666543 23469999999999 44556666666553
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHH
Q 039866 296 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQ 374 (418)
Q Consensus 296 ~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~d 374 (418)
....+++|++|+.++.+.+++++ |+ ..+.|+.++.++....+...+.+.... ....+..++..+.| ..++
T Consensus 148 -----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~ 218 (620)
T PRK14948 148 -----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRD 218 (620)
T ss_pred -----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 34567788888888889999988 88 578999999988888777766654333 22346677777766 3466
Q ss_pred HHHHHHHH
Q 039866 375 LKAVCVEA 382 (418)
Q Consensus 375 i~~l~~~A 382 (418)
+.+++...
T Consensus 219 A~~lLekl 226 (620)
T PRK14948 219 AESLLDQL 226 (620)
T ss_pred HHHHHHHH
Confidence 66666543
No 143
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.3e-14 Score=146.64 Aligned_cols=209 Identities=19% Similarity=0.259 Sum_probs=149.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE--EEEccchhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF--LKLAGPQLV 236 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~--~~i~~s~l~ 236 (418)
..+..|++++|++.+.+.|..++... +-.+++||+||.|||||++||.+|+.++|.- ..--|.++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 35678999999999999999988543 3455799999999999999999999986542 111111111
Q ss_pred ---hhh-------------hcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh
Q 039866 237 ---QMF-------------IGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 296 (418)
Q Consensus 237 ---~~~-------------~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 296 (418)
+-- ...+-..++.+.+.+.- ..+.|.+|||+|.|. . ..+..+|..+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~---~afNALLKTL 143 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------K---QAFNALLKTL 143 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------H---HHHHHHhccc
Confidence 000 11123445666666643 335799999999983 2 3455555555
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCC-CHHHHHHHcCCCcHHHH
Q 039866 297 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV-NFEELARSTDDFNGAQL 375 (418)
Q Consensus 297 ~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~s~~di 375 (418)
+ .++.+|++|++|..++.+++.+++ |+ ..+.|...+.++....+...+.+..+..+. .+..+++.+.| +.+|.
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDa 217 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDA 217 (515)
T ss_pred c--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhH
Confidence 4 355789999999999999999999 88 588999999999999999999877776443 45666666665 78999
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 376 KAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 376 ~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
..++..|...+- ..||.+.+...+
T Consensus 218 lslLDq~i~~~~----~~It~~~v~~~l 241 (515)
T COG2812 218 LSLLDQAIAFGE----GEITLESVRDML 241 (515)
T ss_pred HHHHHHHHHccC----CcccHHHHHHHh
Confidence 999988776642 445555554443
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.58 E-value=3.1e-14 Score=150.46 Aligned_cols=218 Identities=22% Similarity=0.271 Sum_probs=148.2
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-------------------
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------------------- 223 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l------------------- 223 (418)
.|..|+|++.++..+.-....+ ...++||.||+|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999998886655332 12469999999999999999999987
Q ss_pred ----------------CCcEEEEccchhhhhhhcch--HHHH--------HHHHHHHHhCCCeEEEEcCCCcccccCCCC
Q 039866 224 ----------------NATFLKLAGPQLVQMFIGDG--AKLV--------RDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 277 (418)
Q Consensus 224 ----------------~~~~~~i~~s~l~~~~~g~~--~~~~--------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 277 (418)
..+|+.+.++.....++|.. ...+ ..++. ....+|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLA---EAHRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCccee---ecCCCeEEeChhhhC-------
Confidence 24666666654444444431 1100 01111 113359999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEeCCCC-CCChhhhCCCCceeEEEcCCCC-HHHHHHHHHH
Q 039866 278 EVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIELPHPS-EEARARILQI 347 (418)
Q Consensus 278 ~~~~~~~~~~~l~~ll~~~~------~--~~~~~~vivI~ttn~~~-~l~~~l~r~~Rf~~~i~~~~p~-~~~r~~il~~ 347 (418)
+...+..|+++++... + .....++++|+|+|+.+ .+.++|+. ||+..+.++.+. .+++.++++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 7788999999987532 1 11234789999999653 68899999 999889888764 5667777654
Q ss_pred Hhhc-------------------------------CCCCCCCCHHHHHHHc--CCC-cHHHHHHHHHHHHHHHHHhCCCC
Q 039866 348 HSRK-------------------------------MTVHPDVNFEELARST--DDF-NGAQLKAVCVEAGMLALRRDATE 393 (418)
Q Consensus 348 ~~~~-------------------------------~~~~~~~~~~~la~~~--~g~-s~~di~~l~~~A~~~A~~~~~~~ 393 (418)
.... ..+ ++.....++..+ .|. +.+....+++.|...|..+++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~ 291 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRR 291 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 3210 000 111122233222 233 34556678888999999999999
Q ss_pred ccHHHHHHHHHHHHHhh
Q 039866 394 VNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 394 It~~d~~~Al~~~~~~~ 410 (418)
|+.+|+..|+..+...+
T Consensus 292 V~~~Dv~~A~~lvL~hR 308 (633)
T TIGR02442 292 VTAEDVREAAELVLPHR 308 (633)
T ss_pred CCHHHHHHHHHHHhhhh
Confidence 99999999999988644
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.6e-14 Score=146.35 Aligned_cols=210 Identities=17% Similarity=0.199 Sum_probs=136.7
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE---Ec---
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK---LA--- 231 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~---i~--- 231 (418)
+..+.+|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+.+|+.+.+..-. ..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 345678999999999999998877421 234568999999999999999999988542210 00
Q ss_pred cc---hhhhh----h---h---cchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 039866 232 GP---QLVQM----F---I---GDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 294 (418)
Q Consensus 232 ~s---~l~~~----~---~---g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 294 (418)
|+ .+... + . ......++.+.+.+.. ..+.|++|||+|.| +.+.++.|+..++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naLLk~LE 145 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNALLKTLE 145 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHHHHHHh
Confidence 11 00000 0 0 0112233444443332 23569999999998 3344555555555
Q ss_pred hhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHH
Q 039866 295 QLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGA 373 (418)
Q Consensus 295 ~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~ 373 (418)
. ....+++|++++..+.+.+.+.+ |+ ..+.|+.++..+...++...+....+. .+..+..++..+.| +.+
T Consensus 146 e-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr 216 (585)
T PRK14950 146 E-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMR 216 (585)
T ss_pred c-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 3 22456777777777788888887 77 478999999999999888887665543 23346677777665 677
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 374 QLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 374 di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
++.+.+.....+ ....|+.+++...+
T Consensus 217 ~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 217 DAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 777777654332 23468888776543
No 146
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=5.8e-14 Score=142.45 Aligned_cols=192 Identities=11% Similarity=0.214 Sum_probs=137.2
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHH---HHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK---LVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~---~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
.++++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999965 4678899998887766543221 121222222 34569999999988
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC-CC---CCChhhhCCCCce--eEEEcCCCCHHHHHHH
Q 039866 271 GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR-AD---ILDPALMRSGRLD--RKIELPHPSEEARARI 344 (418)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~-~~---~l~~~l~r~~Rf~--~~i~~~~p~~~~r~~i 344 (418)
.. ....+..|+.+++..... ++ .+|.|+|. |. .+++.+.+ ||. ..+.+.+|+.++|..|
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~~---~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIEN---DK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHHc---CC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 43 235677788888765432 22 35556554 43 46788988 875 4888999999999999
Q ss_pred HHHHhhcCCC---CCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHH
Q 039866 345 LQIHSRKMTV---HPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 345 l~~~~~~~~~---~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-~~~It~~d~~~Al~~~~~ 408 (418)
++..+....+ -++..+..|+..+.| +++.+..+|..+...+.... ...||.+.+.++++.+..
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~ 350 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPT 350 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccc
Confidence 9999876443 123346667777765 78999999998887776653 257999999999987643
No 147
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.57 E-value=9.9e-15 Score=143.65 Aligned_cols=201 Identities=26% Similarity=0.321 Sum_probs=134.4
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 237 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~ 237 (418)
...+..|||.+.++..+.+.|... .+....|||.|.+||||..+||+|++.. +.||+.+||..+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 346788999999999999988533 2355679999999999999999999987 68999999976654
Q ss_pred hhhc-chHHHHHHHHHHHHhC--------CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--CCCCC----
Q 039866 238 MFIG-DGAKLVRDAFQLAKEK--------SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSSD---- 302 (418)
Q Consensus 238 ~~~g-~~~~~~~~~~~~a~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~---- 302 (418)
.... +--++.+..|..|... ..+.||+|||..| +..+|..|++.|++.+ ...++
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCceeE
Confidence 4221 1112222333333221 2359999999999 7789999999998643 33332
Q ss_pred CCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHh----hcCCCC----CCCCHHHH
Q 039866 303 DRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHS----RKMTVH----PDVNFEEL 363 (418)
Q Consensus 303 ~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~----~~~~~~----~~~~~~~l 363 (418)
-+|.||++||+- ..|...|.- |+. ++.+..|+..+|.+ +..+++ ...... +...++.+
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYy--RLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYY--RLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhh--ccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 268899999963 234444443 553 66777888777744 223333 333331 11224444
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 039866 364 ARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 364 a~~~~g~s~~di~~l~~~A~~~A 386 (418)
..+.-..+.+++++++.+|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 44433334589999999999987
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.2e-13 Score=142.79 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=137.6
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-------------
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------- 226 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------- 226 (418)
.+.+|++|+|++.+++.+...+... ..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 4578999999999999999988432 345669999999999999999999987542
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.+++.. ......++.+...+... .+.|++|||+|.+ +.+.++.|+
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~naLL 142 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAFNAFL 142 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHHHHHH
Confidence 11222110 01123455555555432 2469999999999 445566666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHP-DVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g 369 (418)
..|+. ....+++|++|+.+..+-+++++ |+ .++.|++++.++....+...+....+.- ...+..++..+.|
T Consensus 143 K~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 143 KTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66664 23456777777777889999998 87 5799999999999999988877665542 2346677777654
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
+.+++.+++.....++ +.. |+.+++.+.
T Consensus 215 -dlr~al~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 215 -GMRDALSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred -CHHHHHHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 5666666665544433 211 555555443
No 149
>PRK06620 hypothetical protein; Validated
Probab=99.56 E-value=2.1e-13 Score=125.07 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=111.5
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 279 (418)
++++||||||||||+|++++++..+..++. ..... . .. . ....+|+|||||.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-------~----~~---~--~~~d~lliDdi~~~--------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-------E----EI---L--EKYNAFIIEDIENW--------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-------h----hH---H--hcCCEEEEeccccc---------
Confidence 679999999999999999999987653322 11110 0 11 1 12359999999965
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC--CChhhhCCCCcee--EEEcCCCCHHHHHHHHHHHhhcCCCC
Q 039866 280 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI--LDPALMRSGRLDR--KIELPHPSEEARARILQIHSRKMTVH 355 (418)
Q Consensus 280 ~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~--l~~~l~r~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~ 355 (418)
. ...+..+++.+.. .++.++|+++..|.. + |++++ |+.. ++.+.+|+.+.+..+++..+....+.
T Consensus 98 --~---~~~lf~l~N~~~e---~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 98 --Q---EPALLHIFNIINE---KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred --h---HHHHHHHHHHHHh---cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 1345566655432 345667777665554 5 88988 8753 79999999999999998887754443
Q ss_pred -CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 356 -PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 356 -~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
++.....|+....+ +.+.+..++......+...+ ..||...+.+++
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 34456777777765 67788888877554454444 568998888775
No 150
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.55 E-value=2.8e-13 Score=141.94 Aligned_cols=136 Identities=23% Similarity=0.321 Sum_probs=90.3
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc----C------------CCCCCCeEEEEEeCCC--CCCChhh
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD----G------------FSSDDRIKVIAATNRA--DILDPAL 321 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~----~------------~~~~~~vivI~ttn~~--~~l~~~l 321 (418)
++|||||++.| ++..|..|.++|+... + ..-+.++.+|+++|+. ..++|+|
T Consensus 219 GtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 48888888888 5678888998887532 1 0112378899999975 5799999
Q ss_pred hCCCCce---eEEEcCC--C-CHHHHHHHHHHHh---hcCCCCCCCC---HHHHHH---HcC------CCcHHHHHHHHH
Q 039866 322 MRSGRLD---RKIELPH--P-SEEARARILQIHS---RKMTVHPDVN---FEELAR---STD------DFNGAQLKAVCV 380 (418)
Q Consensus 322 ~r~~Rf~---~~i~~~~--p-~~~~r~~il~~~~---~~~~~~~~~~---~~~la~---~~~------g~s~~di~~l~~ 380 (418)
++ ||+ ..+.|+. | +.+.+..+++... .........+ +..+.+ +.. ..+.++|..+|+
T Consensus 288 ~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 288 RS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 99 998 6666642 3 4555655544333 2221112233 233322 111 134589999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 381 EAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 381 ~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
.|...|..+++..|+.+|+.+|++....
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 9988888888899999999999876544
No 151
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.55 E-value=1.4e-13 Score=140.66 Aligned_cols=212 Identities=23% Similarity=0.342 Sum_probs=138.8
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh------------------
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------------------ 223 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l------------------ 223 (418)
.+|.+|.|+..+++.+.-.+ ....+++|+||||||||++++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47899999999987765544 345679999999999999999998743
Q ss_pred ----------CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 039866 224 ----------NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 293 (418)
Q Consensus 224 ----------~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 293 (418)
..||...+++......+|.+.......+..+ ..+||||||++.+ +..++..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 1233333333222222332211111233333 3369999999998 678899999998
Q ss_pred HhhcC--------CCCCCCeEEEEEeCCC------C-----------------CCChhhhCCCCceeEEEcCCCCHHHH-
Q 039866 294 NQLDG--------FSSDDRIKVIAATNRA------D-----------------ILDPALMRSGRLDRKIELPHPSEEAR- 341 (418)
Q Consensus 294 ~~~~~--------~~~~~~vivI~ttn~~------~-----------------~l~~~l~r~~Rf~~~i~~~~p~~~~r- 341 (418)
+...- .....++.+|+++|+- + .+...|+. |||..+.++.++..+.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 75321 1123478999999962 1 47888988 9999999997754422
Q ss_pred ------------HHHHHH------HhhcC---CCCCCCCHHHH----------------HHHcCCCcHHHHHHHHHHHHH
Q 039866 342 ------------ARILQI------HSRKM---TVHPDVNFEEL----------------ARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 342 ------------~~il~~------~~~~~---~~~~~~~~~~l----------------a~~~~g~s~~di~~l~~~A~~ 384 (418)
..+.+. .+... .++.......+ +....++|.+....+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 222221 11111 11211111111 112346889999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHH
Q 039866 385 LALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~Al~ 404 (418)
.|-.++...|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999985
No 152
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.55 E-value=1.5e-13 Score=126.72 Aligned_cols=169 Identities=24% Similarity=0.377 Sum_probs=113.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHH-HHHHHHHHHHhCCCeEEEEcCCCcccccC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK-LVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 274 (418)
.++||||+|+|||+|+++++++. +..++++++.++...+...... .+..+.+..+ ...+|+||+++.+..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~-- 111 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG-- 111 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT--
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC--
Confidence 58999999999999999999875 5678999998887765433211 1222333333 346999999999853
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhCCCCcee--EEEcCCCCHHHHHHHHHHHh
Q 039866 275 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLDR--KIELPHPSEEARARILQIHS 349 (418)
Q Consensus 275 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---l~~~l~r~~Rf~~--~i~~~~p~~~~r~~il~~~~ 349 (418)
....+..++.+++.+.. .++.+|+++...|.. +++.+.+ ||.. .+.+.+|+.+.|..|++..+
T Consensus 112 -------~~~~q~~lf~l~n~~~~---~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 112 -------KQRTQEELFHLFNRLIE---SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -------HHHHHHHHHHHHHHHHH---TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHh---hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 34567888888887643 234455555555553 5688888 7765 89999999999999999998
Q ss_pred hcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 350 RKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 350 ~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
....+. ++.....++.... .+.++|..++......+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 876665 2333556666655 47788888887766554
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.55 E-value=4.5e-13 Score=131.90 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=141.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
+-+.++||||+|.|||+|++|++++. +..++++....+...++......-..-|..-. ...+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 44569999999999999999999986 34688888888877665443222222333333 346999999999965
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhCCCCcee--EEEcCCCCHHHHHHHHHH
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLDR--KIELPHPSEEARARILQI 347 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---l~~~l~r~~Rf~~--~i~~~~p~~~~r~~il~~ 347 (418)
+. ..+..++.+++.+... ++.+|+.+...|.. +.|.|.+ ||.. ++.+.+|+.+.|..|++.
T Consensus 190 k~---------~~qeefFh~FN~l~~~---~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLEN---GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhc---CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 42 4567777777765432 34555555556654 4589998 8775 888999999999999999
Q ss_pred HhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhh
Q 039866 348 HSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 348 ~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 410 (418)
......+. ++.....++.... -+.+++..++......|...++ .||.+.+.++++.+....
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAG 317 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhccc
Confidence 77665555 3344666776655 3678999999888888877766 789999999988887653
No 154
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.54 E-value=6.6e-13 Score=133.02 Aligned_cols=216 Identities=18% Similarity=0.154 Sum_probs=136.2
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccc-hhhhhhhc
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGP-QLVQMFIG 241 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s-~l~~~~~g 241 (418)
..|+|.+++++.+..++ ....++||+||||||||++|++++..++. +|..+.+. ......+|
T Consensus 20 ~~i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 45889999999887766 34568999999999999999999998743 44444433 11223334
Q ss_pred ch-HHHH--HHHHHHHHhC---CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----CCeEEEEE
Q 039866 242 DG-AKLV--RDAFQLAKEK---SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-----DRIKVIAA 310 (418)
Q Consensus 242 ~~-~~~~--~~~~~~a~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-----~~vivI~t 310 (418)
.. -... ...|.....+ ...+||+|||..+ ++..++.|++++++..-..+. +..++++|
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 21 0000 1122211111 1249999999987 778899999999764311111 12234455
Q ss_pred eCCCC---CCChhhhCCCCceeEEEcCCCC-HHHHHHHHHHHhhc--CCCC--CCCC--------------------HH-
Q 039866 311 TNRAD---ILDPALMRSGRLDRKIELPHPS-EEARARILQIHSRK--MTVH--PDVN--------------------FE- 361 (418)
Q Consensus 311 tn~~~---~l~~~l~r~~Rf~~~i~~~~p~-~~~r~~il~~~~~~--~~~~--~~~~--------------------~~- 361 (418)
||+.. .+.+++.. ||...+.+|+|+ .++..+++...... .... .-+. .+
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ey 231 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFEL 231 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHH
Confidence 57432 34468888 998899999997 46667777653221 1110 0111 11
Q ss_pred --HHHHH---c---CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 362 --ELARS---T---DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 362 --~la~~---~---~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
.+... + ...|+|--..+++.|...|...++..|+.+|+. .+..+...
T Consensus 232 I~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 232 IFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 22221 1 126788888899999999999999999999999 66655443
No 155
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.53 E-value=3.1e-14 Score=136.55 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=105.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh--hhcchHHH----------HHHHHHHHHhCCCeEEEEc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIGDGAKL----------VRDAFQLAKEKSPCIIFID 265 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~--~~g~~~~~----------~~~~~~~a~~~~~~vl~iD 265 (418)
..+++||.||||||||++++++|..++.++++++++..... ++|..... ....+..|.. .+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 45689999999999999999999999999999998765544 44432110 1112233332 34789999
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHhh---------cCCCCCCCeEEEEEeCCCC------------CCChhhhCC
Q 039866 266 EIDAIGTKRFDSEVSGDREVQRTMLELLNQL---------DGFSSDDRIKVIAATNRAD------------ILDPALMRS 324 (418)
Q Consensus 266 Eid~l~~~~~~~~~~~~~~~~~~l~~ll~~~---------~~~~~~~~vivI~ttn~~~------------~l~~~l~r~ 324 (418)
|+|.+ .++++..|..+|+.- ..+.....+.||+|.|+.. .++++++.
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99988 678888988898731 1122334788999999853 47899999
Q ss_pred CCceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 325 GRLDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 325 ~Rf~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
||..++.++.|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999876543
No 156
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.52 E-value=3e-13 Score=115.11 Aligned_cols=141 Identities=44% Similarity=0.674 Sum_probs=96.6
Q ss_pred CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchHH
Q 039866 169 GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAK 245 (418)
Q Consensus 169 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~~ 245 (418)
|.+..+..+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 566777777666532 245679999999999999999999998 8899999988765543322111
Q ss_pred H---HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC-CCCCCeEEEEEeCCCC--CCCh
Q 039866 246 L---VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRAD--ILDP 319 (418)
Q Consensus 246 ~---~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~~vivI~ttn~~~--~l~~ 319 (418)
. ............+.+|+|||++.+ .......+.+++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 112233344556789999999987 233445566666554321 1135788899998877 6788
Q ss_pred hhhCCCCceeEEEcCC
Q 039866 320 ALMRSGRLDRKIELPH 335 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~ 335 (418)
.+.+ ||+..+.+++
T Consensus 138 ~~~~--r~~~~i~~~~ 151 (151)
T cd00009 138 ALYD--RLDIRIVIPL 151 (151)
T ss_pred hHHh--hhccEeecCC
Confidence 8887 9987777763
No 157
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.51 E-value=6e-14 Score=137.63 Aligned_cols=202 Identities=25% Similarity=0.245 Sum_probs=131.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQL 235 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l 235 (418)
....+.+++|.+...+.+++.+... .+...+||++|++||||+.+|++++... +.||+.+||+.+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 4567889999999999999998641 1345579999999999999999998643 679999999877
Q ss_pred hhhh-----hcchH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC----
Q 039866 236 VQMF-----IGDGA-------KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF---- 299 (418)
Q Consensus 236 ~~~~-----~g~~~-------~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---- 299 (418)
.... +|... .....+|+.|.. ++||+|||+.+ .++.|..++++++...-.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 5542 22211 112345555544 49999999999 778999999999974321
Q ss_pred --CCCCCeEEEEEeCCC--CCCCh--hhhCCCCceeEEEcCCCCH--HHHHHHHHHHh----hcCCCCCCCCH----HHH
Q 039866 300 --SSDDRIKVIAATNRA--DILDP--ALMRSGRLDRKIELPHPSE--EARARILQIHS----RKMTVHPDVNF----EEL 363 (418)
Q Consensus 300 --~~~~~vivI~ttn~~--~~l~~--~l~r~~Rf~~~i~~~~p~~--~~r~~il~~~~----~~~~~~~~~~~----~~l 363 (418)
....+|.+|++||.. +.+-. .+.+. |+...|.+|++-. .++..++.+++ +++......+. ..+
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 223478899988732 23333 44441 5555666655543 23333444444 44444422222 222
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 364 ARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 364 a~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
..+.-..+.+++++++..++..+.
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhc
Confidence 222222245899999999888874
No 158
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.50 E-value=8.2e-14 Score=143.33 Aligned_cols=212 Identities=17% Similarity=0.225 Sum_probs=133.4
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM 238 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~ 238 (418)
..|++++|.+..++.+.+.+.... ....+|||+|++||||+++|+++++.. +.||+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 568899999999999998874321 245579999999999999999999865 579999999866432
Q ss_pred -----hhcchHH--------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CCC--
Q 039866 239 -----FIGDGAK--------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS-- 301 (418)
Q Consensus 239 -----~~g~~~~--------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~-- 301 (418)
++|...+ ....+|+.+. .++||||||+.| +...|..|+++|+.... ..+
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 2332111 1123444443 359999999999 77899999999986431 111
Q ss_pred --CCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHH----HHHHHHHhhcCCCC--CCCCHHHHH--
Q 039866 302 --DDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEAR----ARILQIHSRKMTVH--PDVNFEELA-- 364 (418)
Q Consensus 302 --~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r----~~il~~~~~~~~~~--~~~~~~~la-- 364 (418)
..++.+|++||.. ..+.+.|.. |+. .+.+..|+..+| ..++..++...... .......+.
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 2256789988754 134445554 553 344444554444 44555555443211 112222211
Q ss_pred ------HHcCCCcH--HHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 039866 365 ------RSTDDFNG--AQLKAVCVEAGMLALRRDATEVNHEDFNE 401 (418)
Q Consensus 365 ------~~~~g~s~--~di~~l~~~A~~~A~~~~~~~It~~d~~~ 401 (418)
-....|.| ++|++++.++...+.......|+.+|+..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 11234544 78999988887765322345677777643
No 159
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.50 E-value=5.3e-14 Score=124.37 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCC----cEEEEccchhhhhhhcchHHHHHHHHHH----HHhCCCeEEEEcCCCc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNA----TFLKLAGPQLVQMFIGDGAKLVRDAFQL----AKEKSPCIIFIDEIDA 269 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~----~~~~i~~s~l~~~~~g~~~~~~~~~~~~----a~~~~~~vl~iDEid~ 269 (418)
|-.++||+||+|||||.+|+++|+.+.. +++.++|+++.... +....+..+... ......+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457999999999999999999999985 99999999887611 001111111110 1111123999999999
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCCC
Q 039866 270 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------DDRIKVIAATNRA 314 (418)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~vivI~ttn~~ 314 (418)
+.+..+.........+++.|+++++...-... ..++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 94321111111122889999999987533222 2489999999964
No 160
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.49 E-value=1.7e-13 Score=141.00 Aligned_cols=210 Identities=19% Similarity=0.277 Sum_probs=131.3
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH-----------hCCcEEEE
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ-----------TNATFLKL 230 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~-----------l~~~~~~i 230 (418)
..|++++|.+..++.+.+.+.... ....+|||+|++||||+++|+++++. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 468899999999999999874321 24557999999999999999999987 36799999
Q ss_pred ccchhhhh-----hhcchHH--------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc
Q 039866 231 AGPQLVQM-----FIGDGAK--------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 297 (418)
Q Consensus 231 ~~s~l~~~-----~~g~~~~--------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 297 (418)
||+.+... .+|...+ ....+|+.+. .++||||||+.| +...|..|+++|+...
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 99876433 2332211 1113444443 359999999999 7789999999997643
Q ss_pred C--CCC----CCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHH----HHHHHHhhcCC--CCCCC
Q 039866 298 G--FSS----DDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKMT--VHPDV 358 (418)
Q Consensus 298 ~--~~~----~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~----~il~~~~~~~~--~~~~~ 358 (418)
. ..+ ..++.+|++||.. ..+.+.+.. |+. .+.+..|+..+|. .++..++.... .....
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 111 2367899998853 124445544 443 4555566665554 35555554421 11112
Q ss_pred CHHHH--------HHHcCCCcH--HHHHHHHHHHHHHHHHhCCCCccHHHH
Q 039866 359 NFEEL--------ARSTDDFNG--AQLKAVCVEAGMLALRRDATEVNHEDF 399 (418)
Q Consensus 359 ~~~~l--------a~~~~g~s~--~di~~l~~~A~~~A~~~~~~~It~~d~ 399 (418)
....+ .-..+.|.| ++|++++.++...+.......|+.+++
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 21111 112233444 799999998877543222234554444
No 161
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.49 E-value=3.2e-13 Score=131.92 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=125.2
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh--
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-- 238 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~-- 238 (418)
+++++|.+..++.+.+.+.... ..+.+|||+|++||||+++|++++... +.||+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 5679999999999999885432 345579999999999999999999876 479999999876432
Q ss_pred ---hhcchHHH-------HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC------CC
Q 039866 239 ---FIGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS------SD 302 (418)
Q Consensus 239 ---~~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~ 302 (418)
++|...+. ....++.+ ..++||||||+.| +...|..|+.+++...... ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 22321110 01223333 3469999999999 7788999999997633111 12
Q ss_pred CCeEEEEEeCCC-------CCCChhhhCCCCce-eEEEcCCCCH--HHHHHHHHHHhhc----CCCC--CCCCHHHHHH-
Q 039866 303 DRIKVIAATNRA-------DILDPALMRSGRLD-RKIELPHPSE--EARARILQIHSRK----MTVH--PDVNFEELAR- 365 (418)
Q Consensus 303 ~~vivI~ttn~~-------~~l~~~l~r~~Rf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~--~~~~~~~la~- 365 (418)
.++.||+||+.. ..+.+.|.. ||. ..|.+|++.. ++...++..++.. +... ..++.+.+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 368889988753 357777777 774 3555554432 2334455555432 2221 1233333322
Q ss_pred HcCCCcH--HHHHHHHHHHHHHH
Q 039866 366 STDDFNG--AQLKAVCVEAGMLA 386 (418)
Q Consensus 366 ~~~g~s~--~di~~l~~~A~~~A 386 (418)
....|.| ++|++++..|...+
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHhc
Confidence 1223444 78888888877654
No 162
>PHA02244 ATPase-like protein
Probab=99.48 E-value=1.6e-12 Score=126.10 Aligned_cols=125 Identities=23% Similarity=0.259 Sum_probs=87.3
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcc--hHHHH--HHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKLV--RDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~--~~~~~--~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
.+.++||+||||||||++|+++|..++.+|+.++...-.....|. ..+.+ ..++...+ .+++|+|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a--- 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDAS--- 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcC---
Confidence 345799999999999999999999999999999853111111111 00111 12233332 3469999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhh--c----CCCCCCCeEEEEEeCCC-----------CCCChhhhCCCCceeEEEcCCC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQL--D----GFSSDDRIKVIAATNRA-----------DILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~--~----~~~~~~~vivI~ttn~~-----------~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
+++++..|..+++.. . ......++.+|+|+|++ ..+++++++ ||. .+.++.|
T Consensus 193 --------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 193 --------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred --------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 667888888888631 1 11223578999999973 467999999 994 7899998
Q ss_pred CH
Q 039866 337 SE 338 (418)
Q Consensus 337 ~~ 338 (418)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 84
No 163
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.48 E-value=2.1e-12 Score=126.54 Aligned_cols=149 Identities=32% Similarity=0.384 Sum_probs=107.0
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh--hhhcch
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ--MFIGDG 243 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~--~~~g~~ 243 (418)
.++|.++++..+..++ ...+++||.||||||||++|+++|..++.+|+++.|..... ...|..
T Consensus 25 ~~~g~~~~~~~~l~a~---------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLAL---------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHH---------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 3778888888776665 24568999999999999999999999999999999974432 222321
Q ss_pred HHHHH----H--------HHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc------C-CCCCCC
Q 039866 244 AKLVR----D--------AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G-FSSDDR 304 (418)
Q Consensus 244 ~~~~~----~--------~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~-~~~~~~ 304 (418)
.-... . +|...+ +++++|||++. ++.+++.|++.+++.. . ..-...
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~ 154 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPP 154 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence 11110 0 111111 39999999998 7889999999998632 2 334467
Q ss_pred eEEEEEeCC-----CCCCChhhhCCCCceeEEEcCCCC-HHHHHHHHH
Q 039866 305 IKVIAATNR-----ADILDPALMRSGRLDRKIELPHPS-EEARARILQ 346 (418)
Q Consensus 305 vivI~ttn~-----~~~l~~~l~r~~Rf~~~i~~~~p~-~~~r~~il~ 346 (418)
++||+|+|+ ...+++++++ ||...+.++.|+ ..+...++.
T Consensus 155 f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 155 FIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred CEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHH
Confidence 889999994 4578999999 998899999994 444444443
No 164
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.48 E-value=6.6e-13 Score=129.67 Aligned_cols=192 Identities=19% Similarity=0.245 Sum_probs=121.5
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh----
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF---- 239 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~---- 239 (418)
++|.+.+++.+.+.+.... ....+|||+|++||||+++|++++... +.||+.+||..+....
T Consensus 1 liG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 5788899999888775432 345679999999999999999999876 4799999998654322
Q ss_pred -hcchHHH-------HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--C----CCCCCe
Q 039866 240 -IGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--F----SSDDRI 305 (418)
Q Consensus 240 -~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~----~~~~~v 305 (418)
+|...+. ....++.+ ..++||||||+.| +...|..|+.+++.... . ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 2221110 11223333 3469999999999 77899999999976321 1 112468
Q ss_pred EEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHH----HHHHHHhhc----CCCC--CCCCHHHHHHH-c
Q 039866 306 KVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRK----MTVH--PDVNFEELARS-T 367 (418)
Q Consensus 306 ivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~----~il~~~~~~----~~~~--~~~~~~~la~~-~ 367 (418)
.+|++||.. ..+.+.|.. |+. .+.+..|+..+|. .++..++.. +... ..++...+... .
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 899999853 356677776 774 3445555555543 355554432 2211 12333333221 2
Q ss_pred CCCc--HHHHHHHHHHHHHHH
Q 039866 368 DDFN--GAQLKAVCVEAGMLA 386 (418)
Q Consensus 368 ~g~s--~~di~~l~~~A~~~A 386 (418)
+.|. .++|++++..|...+
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC
Confidence 2343 478888888777655
No 165
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.48 E-value=2.7e-13 Score=141.36 Aligned_cols=210 Identities=22% Similarity=0.311 Sum_probs=135.8
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 237 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~ 237 (418)
...|+.++|.+..++.+.+.+.... ....+|||+|++||||+++|++++... +.+|+.+||..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3578999999999999999885432 345579999999999999999999875 57999999987643
Q ss_pred hh-----hcchHHHH-------HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC--CC--
Q 039866 238 MF-----IGDGAKLV-------RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS-- 301 (418)
Q Consensus 238 ~~-----~g~~~~~~-------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~-- 301 (418)
.. +|...+.. ...++.+ ..++||||||+.| +...|..|+++++..... .+
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCCc
Confidence 22 22211100 0112222 3469999999999 778999999999763211 11
Q ss_pred --CCCeEEEEEeCCC-------CCCChhhhCCCCcee-EEEcCCCC--HHHHHHHHHHHhhcCC----CCCCCC---HHH
Q 039866 302 --DDRIKVIAATNRA-------DILDPALMRSGRLDR-KIELPHPS--EEARARILQIHSRKMT----VHPDVN---FEE 362 (418)
Q Consensus 302 --~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~-~i~~~~p~--~~~r~~il~~~~~~~~----~~~~~~---~~~ 362 (418)
..++.+|++|+.. ..+.+.|.. |+.. .|.+|++. .++...++..++..+. ....++ +..
T Consensus 327 ~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 327 TLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred eEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 1257889988753 245666665 6642 55666554 2445556666654322 112233 233
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 363 LARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 363 la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
|..+.=..+.+++++++..|...+ ....|+.+|+.
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 333321223478888888877654 45678888875
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.1e-12 Score=126.79 Aligned_cols=188 Identities=18% Similarity=0.186 Sum_probs=122.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC-------cEEEE-
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------TFLKL- 230 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~-------~~~~i- 230 (418)
..+..+++|+|++.++..+...+... +-++.+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 34567899999999999999987432 34567999999999999999999998754 11111
Q ss_pred ---ccchhhh---h----h--hc----c---------hHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCC
Q 039866 231 ---AGPQLVQ---M----F--IG----D---------GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSG 281 (418)
Q Consensus 231 ---~~s~l~~---~----~--~g----~---------~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~ 281 (418)
.|..+.. . + +. . .-..++.+.+... ...+.|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 1111000 0 0 00 0 0123333333332 234579999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHH
Q 039866 282 DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFE 361 (418)
Q Consensus 282 ~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~ 361 (418)
+...++.|+..+++ +..++++|..|+.+..+.|++++ |+ ..+.|++|+.++...++........++ +....
T Consensus 154 ~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~ 224 (351)
T PRK09112 154 NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITE 224 (351)
T ss_pred CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHH
Confidence 55666777666654 23456667777888888899988 88 699999999999999998743222211 22245
Q ss_pred HHHHHcCCCcHHHHHHHH
Q 039866 362 ELARSTDDFNGAQLKAVC 379 (418)
Q Consensus 362 ~la~~~~g~s~~di~~l~ 379 (418)
.++..+.| +++....++
T Consensus 225 ~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 225 ALLQRSKG-SVRKALLLL 241 (351)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 66666665 444433443
No 167
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.47 E-value=4.7e-14 Score=126.49 Aligned_cols=146 Identities=30% Similarity=0.424 Sum_probs=72.6
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC------------------
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN------------------ 224 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~------------------ 224 (418)
+|.+|+||+.++..+.-+.. ..+++||+||||||||++|+.+...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa---------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA---------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH---------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc---------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 48899999999999877662 246899999999999999999998541
Q ss_pred ----------CcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 039866 225 ----------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 294 (418)
Q Consensus 225 ----------~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 294 (418)
.||.....+.-....+|.........+..| ..+|||+||+-.+ +..+.+.|.+.++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislA---h~GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLA---HRGVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGG---TTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHh---cCCEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 122222222111222232111111112222 2369999999988 6788888888887
Q ss_pred hhcCC--------CCCCCeEEEEEeCCC-----------------------CCCChhhhCCCCceeEEEcCCCCHH
Q 039866 295 QLDGF--------SSDDRIKVIAATNRA-----------------------DILDPALMRSGRLDRKIELPHPSEE 339 (418)
Q Consensus 295 ~~~~~--------~~~~~vivI~ttn~~-----------------------~~l~~~l~r~~Rf~~~i~~~~p~~~ 339 (418)
..... .-..++++|+|+|+= ..+...++. |||..+.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 64221 123478899999961 245666766 88877777766543
No 168
>PRK09087 hypothetical protein; Validated
Probab=99.47 E-value=2.4e-12 Score=119.15 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=116.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 279 (418)
..++|+||+|+|||+|+++++...+.. +++...+... .+..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCC-------
Confidence 349999999999999999999886554 3333222221 1111112 3899999997621
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhhcCCC
Q 039866 280 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIELPHPSEEARARILQIHSRKMTV 354 (418)
Q Consensus 280 ~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~ 354 (418)
. +..++.+++.... .++.+||+++..|.. ..+.+++ |+. .++.+.+|+.+.|..+++.++....+
T Consensus 102 --~---~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 --D---ETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred --C---HHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 2446666665432 234455555555542 3688888 775 59999999999999999999876554
Q ss_pred C-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 355 H-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 355 ~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
. ++..+..|+....+ +.+.+..++......+...+ ..||...++++++.+
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 4 34456777777764 55666666666666665544 558999999998865
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3e-12 Score=134.36 Aligned_cols=221 Identities=21% Similarity=0.283 Sum_probs=158.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
..-.++.+||.++.+.++.+.+.. +..++-+|.|+||+|||.++..+|... +..++.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 345688999999999999997743 244578899999999999999999964 577899
Q ss_pred Eccchhhh--hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 230 LAGPQLVQ--MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 230 i~~s~l~~--~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
++++.+.. +|.|+.+..++.+...+....+.||||||+|.+.+....++ + ..+..+.|.-.|.. +.+.+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLAR-------GeL~~ 302 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALAR-------GELRC 302 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhc-------CCeEE
Confidence 99988874 68899999999999999988899999999999976543322 1 34556677666654 56778
Q ss_pred EEEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC-----HHHHHHHc-----CCCcH
Q 039866 308 IAATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-----FEELARST-----DDFNG 372 (418)
Q Consensus 308 I~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-----~~~la~~~-----~g~s~ 372 (418)
|++|+..+ .-|++|-| || ..|.+..|+.++-..|++..-..+...+.+. +...+..+ ..+-|
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LP 379 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLP 379 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCC
Confidence 98887533 35899999 99 5889999999999999987776654443322 22222222 33444
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 373 AQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 373 ~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
.-...++.+|+.........+...+.+.+-+.+
T Consensus 380 DKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~ 412 (786)
T COG0542 380 DKAIDLLDEAGARVRLEIDKPEELDELERELAQ 412 (786)
T ss_pred chHHHHHHHHHHHHHhcccCCcchhHHHHHHHH
Confidence 455567777665554332233444444444433
No 170
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.46 E-value=1.1e-12 Score=135.82 Aligned_cols=210 Identities=21% Similarity=0.309 Sum_probs=132.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
.....|++++|.+..++.+.+.+.... ....+|||+|++||||+++|++++... +.||+.++|+.+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 345789999999999999888774321 234569999999999999999998765 479999999876
Q ss_pred hhh-----hhcchHH-------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--CCC-
Q 039866 236 VQM-----FIGDGAK-------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFS- 300 (418)
Q Consensus 236 ~~~-----~~g~~~~-------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~- 300 (418)
... .+|...+ ....+|+.+. .++||||||+.+ ++..|..|+++++... ...
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCC
Confidence 442 2232211 1112344443 469999999999 7789999999997632 111
Q ss_pred ---CCCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHH----HHHHHHhh----cCCCC-CCCCHH
Q 039866 301 ---SDDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSR----KMTVH-PDVNFE 361 (418)
Q Consensus 301 ---~~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~----~il~~~~~----~~~~~-~~~~~~ 361 (418)
...++.||+||+.+ ..+.+.|.. |+. .+.+..|+..+|. .++..++. +.... .....+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 12367888888753 246677776 664 3455555555544 34444443 22221 123333
Q ss_pred HHHHH-cCCCcH--HHHHHHHHHHHHHHHHhCCCCccHHHH
Q 039866 362 ELARS-TDDFNG--AQLKAVCVEAGMLALRRDATEVNHEDF 399 (418)
Q Consensus 362 ~la~~-~~g~s~--~di~~l~~~A~~~A~~~~~~~It~~d~ 399 (418)
.+... .+.|+| ++|++++..|...+ ....|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 33332 223443 78888887777654 3445666663
No 171
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.45 E-value=3.9e-12 Score=120.96 Aligned_cols=193 Identities=16% Similarity=0.234 Sum_probs=123.2
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCC-cEEE---Ecc----chhhhh---hhcch------HHHHHHHH----HHHHhC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNA-TFLK---LAG----PQLVQM---FIGDG------AKLVRDAF----QLAKEK 257 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~-~~~~---i~~----s~l~~~---~~g~~------~~~~~~~~----~~a~~~ 257 (418)
+..++|+||+|+|||++++.+++.+.. .+.. +++ .++... ..|.. ......+. ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 335889999999999999999998752 2221 111 111111 11211 11112222 223355
Q ss_pred CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC--CCC----ChhhhCCCCceeEE
Q 039866 258 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA--DIL----DPALMRSGRLDRKI 331 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~--~~l----~~~l~r~~Rf~~~i 331 (418)
.+.+|+|||++.+ +......+..+.+. .. .....+.|+++..+. +.+ ...+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l-----------~~~~~~~l~~l~~~-~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNL-----------TPELLEELRMLSNF-QT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccC-----------CHHHHHHHHHHhCc-cc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 6789999999998 33334444333322 11 122334444444321 111 123555 787889
Q ss_pred EcCCCCHHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 332 ELPHPSEEARARILQIHSRKMTVH-----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 332 ~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
.+++++.++...++...+...... .+..+..+...+.|. ++.|..+|..|...|...+...|+.+++..++..+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999999888654321 233466778888886 56699999999999999999999999999999987
Q ss_pred H
Q 039866 407 Q 407 (418)
Q Consensus 407 ~ 407 (418)
+
T Consensus 267 ~ 267 (269)
T TIGR03015 267 D 267 (269)
T ss_pred h
Confidence 6
No 172
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=3.1e-12 Score=126.31 Aligned_cols=179 Identities=21% Similarity=0.221 Sum_probs=119.5
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE----E-------
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF----L------- 228 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~----~------- 228 (418)
.+..+++|+|++.+++.+...+... +-++.+||+||+|+||+++|.++|+.+-+.- -
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4567899999999999999887432 3566799999999999999999999873210 0
Q ss_pred EE----ccchh-----------hhhhh---cc--------hHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCC
Q 039866 229 KL----AGPQL-----------VQMFI---GD--------GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSE 278 (418)
Q Consensus 229 ~i----~~s~l-----------~~~~~---g~--------~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~ 278 (418)
.+ .|+.. ..-.. +. .-..++.+...+. ...|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00 01100 00000 10 1122444443332 345679999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCC
Q 039866 279 VSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV 358 (418)
Q Consensus 279 ~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 358 (418)
+...++.|+..+++ ...++++|++|+.++.+.|.+++ |+ ..+.|++|+.++..+++...... ..+.
T Consensus 154 ---~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 154 ---NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred ---CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 66677777777764 23566788889888889999988 87 58999999999998888765421 1111
Q ss_pred CHHHHHHHcCCCcH
Q 039866 359 NFEELARSTDDFNG 372 (418)
Q Consensus 359 ~~~~la~~~~g~s~ 372 (418)
....++..+.|..+
T Consensus 220 ~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 220 PRAALAALAEGSVG 233 (365)
T ss_pred HHHHHHHHcCCCHH
Confidence 12456666666433
No 173
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.45 E-value=2.3e-13 Score=120.03 Aligned_cols=123 Identities=25% Similarity=0.387 Sum_probs=85.7
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh-----
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----- 238 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~----- 238 (418)
|+|.+.+++.+.+.+.... ..+.+|||+|++||||+.+|+++++.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 5799999999999885443 244689999999999999999999976 579999999876433
Q ss_pred hhcchHH-------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--CCCC----CCCe
Q 039866 239 FIGDGAK-------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSS----DDRI 305 (418)
Q Consensus 239 ~~g~~~~-------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~----~~~v 305 (418)
++|...+ ....+++.|.. ++||||||+.| ++.+|..|+++|+... .... ..++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 3343211 11246666655 49999999999 7889999999998642 1211 2378
Q ss_pred EEEEEeCCC
Q 039866 306 KVIAATNRA 314 (418)
Q Consensus 306 ivI~ttn~~ 314 (418)
.||+||+.+
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999853
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.45 E-value=2.4e-12 Score=133.06 Aligned_cols=229 Identities=19% Similarity=0.221 Sum_probs=141.4
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE----ccchhhhhh
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL----AGPQLVQMF 239 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i----~~s~l~~~~ 239 (418)
...|.|++.++..+.-.+...... ..-....++...++||+|+||||||++|+++++.+....+.. ++..+....
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 345677777776665554322110 000001122334799999999999999999999875432222 222221111
Q ss_pred hcch-HHH--H-HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc------C--CCCCCCeEE
Q 039866 240 IGDG-AKL--V-RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKV 307 (418)
Q Consensus 240 ~g~~-~~~--~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~viv 307 (418)
..+. .+. + ...+. ....++++|||++.+ ++..+..|++.++... + ..-+.++.|
T Consensus 281 ~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 281 TRDPETREFTLEGGALV---LADNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred eEccCcceEEecCccEE---ecCCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 1010 000 0 00111 123469999999999 6678888888886522 1 112357889
Q ss_pred EEEeCCCC-------------CCChhhhCCCCceeEEEc-CCCCHHHHHHHHHHHhhcCC--------------------
Q 039866 308 IAATNRAD-------------ILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMT-------------------- 353 (418)
Q Consensus 308 I~ttn~~~-------------~l~~~l~r~~Rf~~~i~~-~~p~~~~r~~il~~~~~~~~-------------------- 353 (418)
|+|+|+.. .+++++++ |||..+.+ ..|+.+...+|.++.+....
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLR 424 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHH
Confidence 99999753 58999999 99885554 67888888888776442110
Q ss_pred ---------CCCCCC---HHHHHH-----H----------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 354 ---------VHPDVN---FEELAR-----S----------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 354 ---------~~~~~~---~~~la~-----~----------~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
+.+.+. ...+.. + ..+.|++.+..+++.|...|..+.+..|+.+|+..|+.-+
T Consensus 425 ~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 425 KYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 000011 111111 1 1245789999999999999999999999999999999887
Q ss_pred HHh
Q 039866 407 QAK 409 (418)
Q Consensus 407 ~~~ 409 (418)
..+
T Consensus 505 ~~s 507 (509)
T smart00350 505 RES 507 (509)
T ss_pred HHh
Confidence 653
No 175
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.44 E-value=1.8e-12 Score=137.98 Aligned_cols=212 Identities=19% Similarity=0.292 Sum_probs=134.6
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 237 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~ 237 (418)
...|++++|.+..++.+.+.+.... ....+|||+|++||||+++|+++++.. +.||+.+||..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 4579999999999999988775432 234569999999999999999999876 47999999986643
Q ss_pred -----hhhcchH----HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC--CC----C
Q 039866 238 -----MFIGDGA----KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS----D 302 (418)
Q Consensus 238 -----~~~g~~~----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~----~ 302 (418)
.++|... ......|+.+ ..++||||||+.| +...|..|+++|+..... .+ .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 2333210 0001123222 3569999999999 778999999999753321 11 1
Q ss_pred CCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHH----HHHHHHhhcC----CCCCCCC---HHHHH
Q 039866 303 DRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKM----TVHPDVN---FEELA 364 (418)
Q Consensus 303 ~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~----~il~~~~~~~----~~~~~~~---~~~la 364 (418)
.++.+|+||+.. ..+.+.|.- |+. .+.+..|+..+|. .++..++..+ .....+. +..|.
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 267799998853 244455544 553 4555566665553 3455555432 1111223 23333
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 365 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 365 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
.+.=..+.++|++++..|...+ ....|+.+|+...+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 3221224478888888877654 44567777776554
No 176
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.44 E-value=1.7e-12 Score=134.33 Aligned_cols=197 Identities=24% Similarity=0.299 Sum_probs=128.1
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh-
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM- 238 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~- 238 (418)
.+.+++|.+..++.+.+.+.... ..+.+|||+|++||||+++|++++... +.+|+.+||..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 67889999999999999885431 345679999999999999999999975 579999999876432
Q ss_pred ----hhcchHHH-------HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CC----C
Q 039866 239 ----FIGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FS----S 301 (418)
Q Consensus 239 ----~~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~----~ 301 (418)
++|...+. ....|+.+ ..++||||||+.| +.+.|..|+++++.... .. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 22321110 01123333 3469999999999 77899999999975331 11 1
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHH----HHHHHHhhcC----CCC-CCCCHHHHHH
Q 039866 302 DDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKM----TVH-PDVNFEELAR 365 (418)
Q Consensus 302 ~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~----~il~~~~~~~----~~~-~~~~~~~la~ 365 (418)
..++.+|++||.. ..+.+.|.. |+. .+.+..|+..+|. .++++++..+ ... ..++...+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2367899999864 246666665 664 3445555555553 3445444432 211 2233332222
Q ss_pred -HcCCCc--HHHHHHHHHHHHHHHH
Q 039866 366 -STDDFN--GAQLKAVCVEAGMLAL 387 (418)
Q Consensus 366 -~~~g~s--~~di~~l~~~A~~~A~ 387 (418)
..+.|. .++|++++..|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 122344 4899999999887764
No 177
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.43 E-value=2e-12 Score=135.30 Aligned_cols=199 Identities=22% Similarity=0.245 Sum_probs=135.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhhhhhhcchH--HHHH-HHHH----HHHhCCCeEEEEcCCCc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQMFIGDGA--KLVR-DAFQ----LAKEKSPCIIFIDEIDA 269 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~~~~~g~~~--~~~~-~~~~----~a~~~~~~vl~iDEid~ 269 (418)
-.+|||.|+||||||++|++++..++ .+|+.+..+......+|... ..+. ..+. .......++||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 35799999999999999999999875 36888886544444444421 0000 0000 00112236999999999
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEeCCCC---CCChhhhCCCCceeEEEcC-CCC
Q 039866 270 IGTKRFDSEVSGDREVQRTMLELLNQLD------GF--SSDDRIKVIAATNRAD---ILDPALMRSGRLDRKIELP-HPS 337 (418)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~vivI~ttn~~~---~l~~~l~r~~Rf~~~i~~~-~p~ 337 (418)
+ ++..+..|+++++... +. ....++.||+|+|+.+ .+.++++. ||...+.+. .|+
T Consensus 96 l-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 L-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred C-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 9 7789999999997643 11 1234788999999865 79999999 999877776 457
Q ss_pred HHHHHHHHHHHhhcC-------------------------CCCCCCCHHHHHHHc--CCCc-HHHHHHHHHHHHHHHHHh
Q 039866 338 EEARARILQIHSRKM-------------------------TVHPDVNFEELARST--DDFN-GAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 338 ~~~r~~il~~~~~~~-------------------------~~~~~~~~~~la~~~--~g~s-~~di~~l~~~A~~~A~~~ 389 (418)
.++|.+|++.++... .++ +.....++..+ .|.+ .+.-..+++.|...|..+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~-~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTIS-AEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCC-HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 778888887754211 111 11122222211 2332 455567788899999999
Q ss_pred CCCCccHHHHHHHHHHHHHhhh
Q 039866 390 DATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 390 ~~~~It~~d~~~Al~~~~~~~~ 411 (418)
++..|+.+|+..|+.-+...+.
T Consensus 242 gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 242 GRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred CCCCCCHHHHHHHHHHHhhhhc
Confidence 9999999999999998886443
No 178
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=4.5e-12 Score=123.39 Aligned_cols=170 Identities=14% Similarity=0.228 Sum_probs=114.7
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc--------EEEEccch
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT--------FLKLAGPQ 234 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~--------~~~i~~s~ 234 (418)
.|++|+|++.+++.+...+... +.++.+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 5889999999999998887321 345678999999999999999999987332 2222211
Q ss_pred hhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
.+.. -.-..++.+.+.+.. ....|++||++|.+ +...++.|+..|++ ++.++++|.+
T Consensus 69 -~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 69 -NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred -cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 0000 112235555543332 33569999999998 55566666666653 3456677777
Q ss_pred eCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCC
Q 039866 311 TNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDF 370 (418)
Q Consensus 311 tn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~ 370 (418)
|+.++.+.|++++ |+ ..+.|++|+.++....+...... .+ ......++..+.|.
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGI 183 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCC
Confidence 7888999999999 88 58999999999988877655432 11 22244555555553
No 179
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.42 E-value=4.9e-12 Score=128.87 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=134.8
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC----cEEE------E-
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA----TFLK------L- 230 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~----~~~~------i- 230 (418)
.+|.++.|+..+++.+.-.+ ....+++|+||||+|||++++.++..+.. ..+. +
T Consensus 188 ~d~~~v~Gq~~~~~al~laa---------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA---------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhheec---------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 37888999988777653222 35567999999999999999999875421 0111 1
Q ss_pred -----------------ccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 039866 231 -----------------AGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 293 (418)
Q Consensus 231 -----------------~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 293 (418)
..+.-....+|.+.......+..+.. ++|||||++.+ ++..+..|.+.|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHH
Confidence 00000111233222112234444433 59999999988 667888999888
Q ss_pred HhhcC--------CCCCCCeEEEEEeCCCC---------------------CCChhhhCCCCceeEEEcCCCCHHHH---
Q 039866 294 NQLDG--------FSSDDRIKVIAATNRAD---------------------ILDPALMRSGRLDRKIELPHPSEEAR--- 341 (418)
Q Consensus 294 ~~~~~--------~~~~~~vivI~ttn~~~---------------------~l~~~l~r~~Rf~~~i~~~~p~~~~r--- 341 (418)
+...- .....++.+|+|+|+.. .++.+++. ||+..+.++.|+.++.
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 65331 11235789999999752 36778988 9999999998853211
Q ss_pred -------H----HHHHH--H--hhcCCCCCCCCHHHH----------------HHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 039866 342 -------A----RILQI--H--SRKMTVHPDVNFEEL----------------ARSTDDFNGAQLKAVCVEAGMLALRRD 390 (418)
Q Consensus 342 -------~----~il~~--~--~~~~~~~~~~~~~~l----------------a~~~~g~s~~di~~l~~~A~~~A~~~~ 390 (418)
. .+... . .+.-.+........+ +....|.|.|....+++-|...|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 11110 0 000011111111111 113347889999999999999999999
Q ss_pred CCCccHHHHHHHHHH
Q 039866 391 ATEVNHEDFNEGIIQ 405 (418)
Q Consensus 391 ~~~It~~d~~~Al~~ 405 (418)
+..|+.+|+.+|+.-
T Consensus 477 ~~~V~~~hv~eAl~y 491 (506)
T PRK09862 477 SDIITRQHLQEAVSY 491 (506)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999864
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=4.8e-12 Score=122.59 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=122.4
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc----------EEEEcc
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------FLKLAG 232 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~----------~~~i~~ 232 (418)
.|++|+|++.+++.+...+... +-++.+||+||+|+||+++|.++|+.+-+. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4889999999999999988432 345689999999999999999999986321 111111
Q ss_pred chhhhh-----hhcc--------------------hHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCH
Q 039866 233 PQLVQM-----FIGD--------------------GAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDR 283 (418)
Q Consensus 233 s~l~~~-----~~g~--------------------~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~ 283 (418)
+++.-- .-|. .-..++.+...+.. ..+.|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 221100 0010 01134455444433 34579999999999 55
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 039866 284 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEEL 363 (418)
Q Consensus 284 ~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 363 (418)
...+.|+..|++ ++ ++++|..|+.++.+.|++++ |+ ..+.|++|+.++..+++......-. .+.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 667777777765 22 45677888889999999999 88 6899999999999988887543111 11224677
Q ss_pred HHHcCCCcHHHHHHHHH
Q 039866 364 ARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 364 a~~~~g~s~~di~~l~~ 380 (418)
+..+.|- ++....++.
T Consensus 208 ~~~a~Gs-~~~al~~l~ 223 (314)
T PRK07399 208 LALAQGS-PGAAIANIE 223 (314)
T ss_pred HHHcCCC-HHHHHHHHH
Confidence 7777764 444444443
No 181
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=7e-11 Score=106.59 Aligned_cols=193 Identities=17% Similarity=0.232 Sum_probs=133.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
.+.+...+|+|.+.+++.+.+.-...+.. .|.++|||+|..|||||+++||+.++. +..++.|+..++
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 45577889999999999998766443332 477899999999999999999999887 567888887766
Q ss_pred hhhhhcchHHHHHHHHHHHHhCC-CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
.. +..+++..+..+ +-|||+|++--= .+......|..+|+.. -...+.||+|.+|+|+.
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~yK~LKs~LeG~-ve~rP~NVl~YATSNRR 184 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDAYKALKSALEGG-VEGRPANVLFYATSNRR 184 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchHHHHHHHHhcCC-cccCCCeEEEEEecCCc
Confidence 43 334556655443 469999997421 1223345555666532 22345699999999985
Q ss_pred CCCCh--------------------hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCC-CH----HHHHHHcCC
Q 039866 315 DILDP--------------------ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV-NF----EELARSTDD 369 (418)
Q Consensus 315 ~~l~~--------------------~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~----~~la~~~~g 369 (418)
..++. .+--+.||...+.|++++.++-..|+..++....++-+. .+ ...|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 43321 111235999999999999999999999999988877431 11 123334456
Q ss_pred CcHHHHHHHHH
Q 039866 370 FNGAQLKAVCV 380 (418)
Q Consensus 370 ~s~~di~~l~~ 380 (418)
-||+-..+.++
T Consensus 265 RSGR~A~QF~~ 275 (287)
T COG2607 265 RSGRVAWQFIR 275 (287)
T ss_pred CccHhHHHHHH
Confidence 67766555544
No 182
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.37 E-value=8.6e-12 Score=119.94 Aligned_cols=102 Identities=25% Similarity=0.275 Sum_probs=63.5
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------CCCCChhhhCCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------ADILDPALMRSGR 326 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~------------~~~l~~~l~r~~R 326 (418)
|+||||||+|.| +.++..-|...++. .-.-+||++||+ |.-++..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 679999999999 77877777776653 122368888885 5678899998 8
Q ss_pred ceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHH
Q 039866 327 LDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 327 f~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 380 (418)
+ .+|...+++.++..+|++.++....+. ++..+..|+......|-+-..+|+.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~ 393 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLIT 393 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhh
Confidence 8 588899999999999999999876554 2233555555444444444444443
No 183
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.37 E-value=9e-12 Score=133.61 Aligned_cols=197 Identities=22% Similarity=0.355 Sum_probs=126.6
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM 238 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~ 238 (418)
..|.+++|.+.+++.+.+.+.... ....+|||+|++|||||++|++++... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 578899999999999988885431 244579999999999999999999865 579999999865432
Q ss_pred -----hhcchHH-------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--CCC----
Q 039866 239 -----FIGDGAK-------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFS---- 300 (418)
Q Consensus 239 -----~~g~~~~-------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~---- 300 (418)
.+|...+ .....++.+ ..++||||||+.+ +.+.|..|+.+++... ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 2232110 111233333 3469999999999 7789999999997632 111
Q ss_pred CCCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHhhcC----CCC-CCCC---HH
Q 039866 301 SDDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHSRKM----TVH-PDVN---FE 361 (418)
Q Consensus 301 ~~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~~~~----~~~-~~~~---~~ 361 (418)
...++.+|++|+.. ..+.+.+.. |+. .+.+..|+..+|.+ +++.++.++ ... ..+. +.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12467899999864 234555554 553 44556666665544 455554332 211 1122 23
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 362 ELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 362 ~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
.|..+.=..+.+++++++..|...+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3333221223489999998888654
No 184
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.36 E-value=4.6e-11 Score=110.48 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=98.1
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC-------------CCCCChhhhCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR-------------ADILDPALMRSG 325 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~-------------~~~l~~~l~r~~ 325 (418)
|+||||||+|.| +-++..-|...|+. +-.-+||++||+ |..+++.++.
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalES------~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALES------PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhcC------CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 679999999988 65655555555442 223357888886 5578889988
Q ss_pred CceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 326 RLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 326 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
|+ .+|..-+++.++.++|++.+...-.+. .+..+..++......|.+-..+++.-|...|...++..|..+|++++-.
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 87 467777888899999999888755544 3445667777666667777778888888999999999999999999877
Q ss_pred HHHHhh
Q 039866 405 QVQAKK 410 (418)
Q Consensus 405 ~~~~~~ 410 (418)
-....+
T Consensus 437 Lf~Dak 442 (456)
T KOG1942|consen 437 LFLDAK 442 (456)
T ss_pred HHHhch
Confidence 666544
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=7.8e-13 Score=113.06 Aligned_cols=112 Identities=31% Similarity=0.426 Sum_probs=75.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh--hhcchHHH-------HHHHHHHHHhCCCeEEEEcCCCccc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~--~~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~ 271 (418)
+|+|+||||||||++|+.+|+.++.+++.++++..... +.|..... ...+...++ .+++++|||++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 48999999999999999999999999999988754321 22211000 000111111 4579999999998
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCC-------C-CCC------CeEEEEEeCCCC----CCChhhhCCCCc
Q 039866 272 TKRFDSEVSGDREVQRTMLELLNQLDGF-------S-SDD------RIKVIAATNRAD----ILDPALMRSGRL 327 (418)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~-------~-~~~------~vivI~ttn~~~----~l~~~l~r~~Rf 327 (418)
+++++..|+.+++..... . ... ++.+|+|+|+.. .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 678888899988742211 0 111 389999999988 89999999 87
No 186
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.35 E-value=2.3e-11 Score=118.59 Aligned_cols=224 Identities=21% Similarity=0.262 Sum_probs=141.6
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc--------
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG-------- 232 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~-------- 232 (418)
...|.-++|++..+..|.-....| .-.++||.|+.|||||+++|+++..|.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 356788999999998876544322 33589999999999999999999987322222222
Q ss_pred -----chhhhh-------------------hhcchHHHH------HHHHH---------HHHhCCCeEEEEcCCCccccc
Q 039866 233 -----PQLVQM-------------------FIGDGAKLV------RDAFQ---------LAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 233 -----s~l~~~-------------------~~g~~~~~~------~~~~~---------~a~~~~~~vl~iDEid~l~~~ 273 (418)
..+..+ -.|.++..+ ....+ .....+.+|||+||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc---
Confidence 111111 112222211 00110 111122369999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhh--------cCCCCCCCeEEEEEeCCCC-CCChhhhCCCCceeEEEcCCC-CHHHHHH
Q 039866 274 RFDSEVSGDREVQRTMLELLNQL--------DGFSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIELPHP-SEEARAR 343 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~--------~~~~~~~~vivI~ttn~~~-~l~~~l~r~~Rf~~~i~~~~p-~~~~r~~ 343 (418)
+..++..|+..+... ..+....++++|+|+|+.. .|.|.|+. ||...+.+..| +.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 778999999998764 1234456899999999865 78999998 99999988765 6788888
Q ss_pred HHHHHhhcCCCCCCCCHH-------------------------------HHHHHc--CCCc-HHHHHHHHHHHHHHHHHh
Q 039866 344 ILQIHSRKMTVHPDVNFE-------------------------------ELARST--DDFN-GAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 344 il~~~~~~~~~~~~~~~~-------------------------------~la~~~--~g~s-~~di~~l~~~A~~~A~~~ 389 (418)
|+++...- ...++.... .++..+ .+.. .+.-..+.+.|...|...
T Consensus 227 Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~ 305 (423)
T COG1239 227 IIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALR 305 (423)
T ss_pred HHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhc
Confidence 88765532 111111111 111100 0111 112223455567777888
Q ss_pred CCCCccHHHHHHHHHHHHHhhh
Q 039866 390 DATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 390 ~~~~It~~d~~~Al~~~~~~~~ 411 (418)
++..++.+|+++|.......+.
T Consensus 306 Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 306 GRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred CceeeehhhHHHHHhhhhhhhh
Confidence 9999999999999988766444
No 187
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.35 E-value=7.8e-11 Score=111.27 Aligned_cols=216 Identities=18% Similarity=0.238 Sum_probs=134.9
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchh-
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL- 235 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l- 235 (418)
.-||+..+.+.+... ...+.+| ......++||+|++|.|||++++.+++.. ..|++.+.++.-
T Consensus 35 rWIgY~~A~~~L~~L-~~Ll~~P------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 35 RWIGYPRAKEALDRL-EELLEYP------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CeecCHHHHHHHHHH-HHHHhCC------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 446776666554432 2212222 11234479999999999999999999864 257888876422
Q ss_pred -----hhhh---hc-------chHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 039866 236 -----VQMF---IG-------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS 300 (418)
Q Consensus 236 -----~~~~---~g-------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 300 (418)
.... .| ........+....+...+.+|+|||+|.+... ...-|+.++.+|..+.+ .
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~N-e 178 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGN-E 178 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhh-c
Confidence 1111 11 11222334456667777889999999997643 33446777777766522 1
Q ss_pred CCCCeEEEEEeCCCC--CCChhhhCCCCceeEEEcCCC-CHHHHHHHHHHHhhcCCCC--CCCCH----HHHHHHcCCCc
Q 039866 301 SDDRIKVIAATNRAD--ILDPALMRSGRLDRKIELPHP-SEEARARILQIHSRKMTVH--PDVNF----EELARSTDDFN 371 (418)
Q Consensus 301 ~~~~vivI~ttn~~~--~l~~~l~r~~Rf~~~i~~~~p-~~~~r~~il~~~~~~~~~~--~~~~~----~~la~~~~g~s 371 (418)
-+-.++.++|..-.. .-|+.+-+ ||. .+.+|.- ..++...++..+-..+++. +.... ..|-..+.|.+
T Consensus 179 L~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 179 LQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred cCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 112333333322111 34688877 995 5566643 3356667777777666665 22333 34445677754
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 039866 372 GAQLKAVCVEAGMLALRRDATEVNHEDFNE 401 (418)
Q Consensus 372 ~~di~~l~~~A~~~A~~~~~~~It~~d~~~ 401 (418)
+++..++..|+..|++.+...||.+.+..
T Consensus 256 -G~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 256 -GELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred -HHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 58999999999999999999999999876
No 188
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.34 E-value=1.1e-11 Score=129.70 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=88.4
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC----------------CCCCCeEEEEEeCCC--CCCChhh
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF----------------SSDDRIKVIAATNRA--DILDPAL 321 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----------------~~~~~vivI~ttn~~--~~l~~~l 321 (418)
++|||||++.| ++..|..|+++|+...-. .-+-++.||+++|+. ..++|+|
T Consensus 228 GtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 228 GVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred cEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 58999999988 667888999988653210 011267899999875 4678999
Q ss_pred hCCCCce---eEEEcCC--C-CHHHHHHHHHHHhhcCCC---CCCCCHH---HHHHH---cCC------CcHHHHHHHHH
Q 039866 322 MRSGRLD---RKIELPH--P-SEEARARILQIHSRKMTV---HPDVNFE---ELARS---TDD------FNGAQLKAVCV 380 (418)
Q Consensus 322 ~r~~Rf~---~~i~~~~--p-~~~~r~~il~~~~~~~~~---~~~~~~~---~la~~---~~g------~s~~di~~l~~ 380 (418)
.. ||. ..+.|.. + +.+.+..+++...+.... ....+.. .+... -.| ...++|..+++
T Consensus 297 ~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r 374 (637)
T PRK13765 297 RS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVR 374 (637)
T ss_pred HH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHH
Confidence 88 875 5566652 2 345666666544433211 1233332 22221 112 23579999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 381 EAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 381 ~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
.|...|...+...|+.+|+.+|...
T Consensus 375 ~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 375 VAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHhhccceecHHHHHHHHHh
Confidence 9999999999999999999988754
No 189
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.34 E-value=2.3e-11 Score=109.53 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=95.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCc------------------------EEEEccchhhhhhhcchHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNAT------------------------FLKLAGPQLVQMFIGDGAKLVRDAFQL 253 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~------------------------~~~i~~s~l~~~~~g~~~~~~~~~~~~ 253 (418)
.++.+||+||+|+|||++|+.+++.+.+. +..+.... .. ..-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 45679999999999999999999987432 11111100 00 112344445555
Q ss_pred HHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCcee
Q 039866 254 AKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDR 329 (418)
Q Consensus 254 a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~ 329 (418)
+.. ..+.|++|||+|.+ ....++.|+..++. .+.++.+|++++.+..+.+++.+ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-E
Confidence 543 34579999999999 44455555555543 23456677777777899999998 77 5
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCC
Q 039866 330 KIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDD 369 (418)
Q Consensus 330 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 369 (418)
.+.|++|+.++...++... .++ +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 233 2335556665554
No 190
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.3e-12 Score=127.15 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=126.4
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---------CcEE-EEc
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---------ATFL-KLA 231 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---------~~~~-~i~ 231 (418)
.+|.||+||+.+++.+.-+. ...+++||+||||||||++|+.+..-+. ...+ .++
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 47999999999999987766 3567899999999999999998877431 0000 000
Q ss_pred c-------------------chhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHH
Q 039866 232 G-------------------PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 292 (418)
Q Consensus 232 ~-------------------s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 292 (418)
. +.-....+|.+.... ...+.....+||||||+-.+ ...+.+.|.+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~---PGeIsLAH~GVLFLDElpef-----------~~~iLe~LR~P 306 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPR---PGEISLAHNGVLFLDELPEF-----------KRSILEALREP 306 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCC---CCceeeecCCEEEeeccchh-----------hHHHHHHHhCc
Confidence 0 000111111110000 00011112369999999766 33333444333
Q ss_pred HHhhcCC--------CCCCCeEEEEEeCCC-----------------------CCCChhhhCCCCceeEEEcCCCCHHHH
Q 039866 293 LNQLDGF--------SSDDRIKVIAATNRA-----------------------DILDPALMRSGRLDRKIELPHPSEEAR 341 (418)
Q Consensus 293 l~~~~~~--------~~~~~vivI~ttn~~-----------------------~~l~~~l~r~~Rf~~~i~~~~p~~~~r 341 (418)
|+..... .-..++.+|+++|+. ..+...|++ |+|..+.++.++..++
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 3322111 112367789999962 246677888 9999999998774332
Q ss_pred --------------HHHHHHH------hhcCCCCCCCC----------------HHHHHHHcCCCcHHHHHHHHHHHHHH
Q 039866 342 --------------ARILQIH------SRKMTVHPDVN----------------FEELARSTDDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 342 --------------~~il~~~------~~~~~~~~~~~----------------~~~la~~~~g~s~~di~~l~~~A~~~ 385 (418)
..+++.+ ..+..++.... +...+-..-++|.+....+++-|..+
T Consensus 385 ~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTi 464 (490)
T COG0606 385 IRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTI 464 (490)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhh
Confidence 1122211 11110121111 22223334467888899999999999
Q ss_pred HHHhCCCCccHHHHHHHHHH
Q 039866 386 ALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 386 A~~~~~~~It~~d~~~Al~~ 405 (418)
|-..+...|...|+.+|+.-
T Consensus 465 ADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 465 ADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred hcccCcchhhHHHHHHHHhh
Confidence 99899999999999999853
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.4e-11 Score=115.09 Aligned_cols=125 Identities=27% Similarity=0.438 Sum_probs=88.9
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCC--------CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR--------PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~--------~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
+-++||+.+++.+.-++... |.++... ...++|+.||+|||||.||+.+|+.++.||..-++..+.
T Consensus 61 ~YVIGQe~AKKvLsVAVYNH------YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLT 134 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNH------YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLT 134 (408)
T ss_pred hheecchhhhceeeeeehhH------HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchh
Confidence 45899999999876655321 2222111 123699999999999999999999999999999998886
Q ss_pred h-hhhcch-HHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCC---CCCCCHHHHHHHHHHHHh
Q 039866 237 Q-MFIGDG-AKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDS---EVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 237 ~-~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~l~~ll~~ 295 (418)
. .|+|+. +..+-.++..+. +...+|+||||||++..+..+. .+.+...+|+.|+.+++.
T Consensus 135 EAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 135 EAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred hccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 5 477774 444444544332 2335799999999998765432 223456789999988863
No 192
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.32 E-value=2.9e-11 Score=120.40 Aligned_cols=147 Identities=27% Similarity=0.417 Sum_probs=91.1
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC--c-----EEEEccc---
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--T-----FLKLAGP--- 233 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~-----~~~i~~s--- 233 (418)
++++.+.++.++.+...+ ...++++|+||||||||++|+.+|..+.. . ++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L---------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHH---------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 456667777777766655 23568999999999999999999998742 1 2223221
Q ss_pred -hhhhhh----hcch--HHHHHHHHHHHHhC--CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhh--------
Q 039866 234 -QLVQMF----IGDG--AKLVRDAFQLAKEK--SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL-------- 296 (418)
Q Consensus 234 -~l~~~~----~g~~--~~~~~~~~~~a~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~-------- 296 (418)
+++..+ .|.. .+....+...|... .|.+|+||||++.... .+...+.++++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH----------Hhhhhhhhhccccccccccce
Confidence 222111 1110 12223344555543 4789999999987322 2233344444321
Q ss_pred ---------cCCCCCCCeEEEEEeCCCC----CCChhhhCCCCceeEEEcCC-CCH
Q 039866 297 ---------DGFSSDDRIKVIAATNRAD----ILDPALMRSGRLDRKIELPH-PSE 338 (418)
Q Consensus 297 ---------~~~~~~~~vivI~ttn~~~----~l~~~l~r~~Rf~~~i~~~~-p~~ 338 (418)
..+..+.++.||+|+|..+ .+|.|++| ||. .|.+.+ ++.
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p~~~~ 361 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEPGFDT 361 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecCCCCh
Confidence 1234456899999999887 79999999 995 455554 343
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=99.32 E-value=6.9e-11 Score=126.53 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=118.2
Q ss_pred CCCCceeec--CCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhC------CCeEEEE
Q 039866 198 PPKGVLLYG--PPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK------SPCIIFI 264 (418)
Q Consensus 198 ~~~~vLl~G--p~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~------~~~vl~i 264 (418)
|.-+-+..| |++.|||++|+++|+++ +.+++.+|+++..+ -..++.+...+... .+.|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567789 99999999999999997 55799999987522 12344444332221 2369999
Q ss_pred cCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHH
Q 039866 265 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARI 344 (418)
Q Consensus 265 DEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~i 344 (418)
||+|.| +...|+.|+.+++. ...++.+|++||.+..+.+++++ |+ ..+.|++|+.++....
T Consensus 637 DEaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 637 DEADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred ECcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 999999 55678888888774 33578899999999999999998 87 6899999999999988
Q ss_pred HHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHH
Q 039866 345 LQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAG 383 (418)
Q Consensus 345 l~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~ 383 (418)
++..+....+. ++..+..++..+.|. .+...++++.+.
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~~ 736 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGD-MRRAINILQAAA 736 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 88877654443 344577888888774 455555555443
No 194
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.7e-11 Score=115.43 Aligned_cols=85 Identities=33% Similarity=0.398 Sum_probs=62.3
Q ss_pred eEEEEcCCCcccccCCCCC-CCCCHHHHHHHHHHHHhh-----cCCCCCCCeEEEEEeC----CCCCCChhhhCCCCcee
Q 039866 260 CIIFIDEIDAIGTKRFDSE-VSGDREVQRTMLELLNQL-----DGFSSDDRIKVIAATN----RADILDPALMRSGRLDR 329 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~-----~~~~~~~~vivI~ttn----~~~~l~~~l~r~~Rf~~ 329 (418)
+|+||||||+++.+...++ ..+-..+|+-|+-+++.- -+.-...++++|++.- .|+.|-|.|.- ||+.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 3999999999987765333 334456788888777532 1222345788888763 57778899955 9999
Q ss_pred EEEcCCCCHHHHHHHHH
Q 039866 330 KIELPHPSEEARARILQ 346 (418)
Q Consensus 330 ~i~~~~p~~~~r~~il~ 346 (418)
.+++..++.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888763
No 195
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.31 E-value=6.7e-11 Score=109.73 Aligned_cols=132 Identities=22% Similarity=0.270 Sum_probs=101.3
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------CCCCChhhhCCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------ADILDPALMRSGR 326 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~------------~~~l~~~l~r~~R 326 (418)
|+||||||+|.| +.++..-|+..++. .+ .-++|++||+ |.-++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~----~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DM----APIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--cc----CcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 679999999998 77777777766653 11 2257777775 5678888887 7
Q ss_pred ceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 327 LDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 327 f~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
+ .+|...+++.++...|++..+..-.+. .+..++.|......-+.+-..+++..|.+.|.+++...+..+|+..++.-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 7 478888999999999999999865544 22335556655555666777889999999999999999999999999988
Q ss_pred HHHhh
Q 039866 406 VQAKK 410 (418)
Q Consensus 406 ~~~~~ 410 (418)
....+
T Consensus 429 FlD~~ 433 (454)
T KOG2680|consen 429 FLDEK 433 (454)
T ss_pred Hhhhh
Confidence 77644
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=2.7e-11 Score=118.52 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=104.3
Q ss_pred CCccccC-cHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE--EEEcc-------
Q 039866 163 DYNDIGG-LEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF--LKLAG------- 232 (418)
Q Consensus 163 ~~~~i~G-~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~--~~i~~------- 232 (418)
.|+.|+| ++.+++.+...+... +.++.+||+||+|+||+++|+++|+.+.++- -...|
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3677888 898999988877321 3566789999999999999999999863320 00000
Q ss_pred -------chhhhh-hhcc--hHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 039866 233 -------PQLVQM-FIGD--GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 298 (418)
Q Consensus 233 -------s~l~~~-~~g~--~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 298 (418)
+++.-- ..|. .-..++.+.+.+. ...+.|++|||+|.+ +.+.++.|+..|++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~LEE--- 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFLEE--- 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHhcC---
Confidence 001000 0011 1123444444433 233469999999999 55666777666664
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHH
Q 039866 299 FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQI 347 (418)
Q Consensus 299 ~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~ 347 (418)
++.++++|++|+.+..+.|++++ |+ ..++|++|+.++....+..
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 34577788888888899999999 88 5899999999988777753
No 197
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.29 E-value=5.1e-11 Score=116.28 Aligned_cols=146 Identities=25% Similarity=0.405 Sum_probs=101.6
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---------------------
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN--------------------- 224 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~--------------------- 224 (418)
+++|.+.....+..++... + ..|+.+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5678888888887776422 1 2333699999999999999999999885
Q ss_pred ---CcEEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc
Q 039866 225 ---ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 297 (418)
Q Consensus 225 ---~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 297 (418)
..++.++.++....- -....++.+...... .+.-|++|||+|.+ +.+.++.++..+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 356666665443321 112334444433322 34579999999999 55666777766663
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHH
Q 039866 298 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR 343 (418)
Q Consensus 298 ~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~ 343 (418)
+..++.+|++||.+..+-+.+++ |+ ..+.|++|+......
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHH
Confidence 44678899999999999999998 88 578888765544433
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=7.7e-11 Score=114.82 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEE--EEccc--------------hhhhhhh---c--chHHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFL--KLAGP--------------QLVQMFI---G--DGAKLVRDAFQLAK 255 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~--~i~~s--------------~l~~~~~---g--~~~~~~~~~~~~a~ 255 (418)
+.++.+||+||+|+|||++|+++|+.+.+.-- .-.|. ++..-.. + -.-..++.+.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 45668999999999999999999998743210 00111 1100000 0 11234555555544
Q ss_pred h----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEE
Q 039866 256 E----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKI 331 (418)
Q Consensus 256 ~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i 331 (418)
. ....|++||++|.+ +.+..+.|+..|++ +++++++|.+|+.++.+.|++++ |+. .+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RCQ-QQ 160 (328)
T ss_pred hccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hce-ee
Confidence 3 34579999999999 66677777777764 34678889999999999999999 984 69
Q ss_pred EcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCc
Q 039866 332 ELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFN 371 (418)
Q Consensus 332 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s 371 (418)
.|++|+.++....+...... ..+.....++..+.|-.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSP 197 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCH
Confidence 99999999888877654321 11222334555555543
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.27 E-value=1.7e-10 Score=118.00 Aligned_cols=219 Identities=19% Similarity=0.289 Sum_probs=144.0
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEEccchhh
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAGPQLV 236 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i~~s~l~ 236 (418)
+.+.+.....|...+...+... .....+.+.|-||||||.+++.+-+.+ ...|+.||+-.+.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 3455555555555554332210 122368999999999999999998855 3678888875443
Q ss_pred hh----------hhcchHHH------HHHHHHH-HHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC
Q 039866 237 QM----------FIGDGAKL------VRDAFQL-AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 299 (418)
Q Consensus 237 ~~----------~~g~~~~~------~~~~~~~-a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 299 (418)
+. +.|+.... +..-|.. .....++||+|||+|.|+.. -|.+|+.+++...
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt-- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPT-- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCc--
Confidence 21 22321111 1111110 02234689999999999753 3678888888643
Q ss_pred CCCCCeEEEEEeCCCCCC----ChhhhCCCCcee-EEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcH--
Q 039866 300 SSDDRIKVIAATNRADIL----DPALMRSGRLDR-KIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNG-- 372 (418)
Q Consensus 300 ~~~~~vivI~ttn~~~~l----~~~l~r~~Rf~~-~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~-- 372 (418)
..+.+++||+.+|..+.. .+..-+ |++. .+.|.+++..+..+|+..++.....-.+...+.+|+.....||
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 345688899988876532 223323 5543 8899999999999999999987643333334455554444444
Q ss_pred HHHHHHHHHHHHHHHHhCC-------CCccHHHHHHHHHHHHH
Q 039866 373 AQLKAVCVEAGMLALRRDA-------TEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 373 ~di~~l~~~A~~~A~~~~~-------~~It~~d~~~Al~~~~~ 408 (418)
+....+|++|...|..+.. ..|+.-|+.+|+..+..
T Consensus 615 Rraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhh
Confidence 5666899999999987765 67899999999999876
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.6e-10 Score=112.04 Aligned_cols=187 Identities=25% Similarity=0.326 Sum_probs=122.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhcch-HHHHHHHHHHHH----hCCCeEEEEcCCCcccccC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGDG-AKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~ 274 (418)
+|||.||+|+|||.||+.+|+-++.||...+|..+.. .|+|+. +..+..++..|. ....+|+||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 5999999999999999999999999999999998865 478764 556666665542 2345799999999998433
Q ss_pred CC---CCCCCCHHHHHHHHHHHHhh------cCC--CCCC--------CeEEEEEeCC--------------------C-
Q 039866 275 FD---SEVSGDREVQRTMLELLNQL------DGF--SSDD--------RIKVIAATNR--------------------A- 314 (418)
Q Consensus 275 ~~---~~~~~~~~~~~~l~~ll~~~------~~~--~~~~--------~vivI~ttn~--------------------~- 314 (418)
.. +.+.+...+|+.|+.+++.. .+. ..++ ++++|+..-- +
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred ccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 21 12334567899999998631 111 1222 3444443210 0
Q ss_pred -----------------------------------CCCChhhhCCCCceeEEEcCCCCHHHHHHHHH-----------HH
Q 039866 315 -----------------------------------DILDPALMRSGRLDRKIELPHPSEEARARILQ-----------IH 348 (418)
Q Consensus 315 -----------------------------------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~-----------~~ 348 (418)
.-+-|.|.- ||+..+.|..++.++..+++. .+
T Consensus 388 ~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVG--RfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~l 465 (564)
T KOG0745|consen 388 SKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVG--RFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKL 465 (564)
T ss_pred CccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhc--ccceEeeccccCHHHHHHHHhcchhhHHHHHHHH
Confidence 013466655 999999999999999888763 11
Q ss_pred hhcCCCC---CCCCHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHh
Q 039866 349 SRKMTVH---PDVNFEELARST--DDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 349 ~~~~~~~---~~~~~~~la~~~--~g~s~~di~~l~~~A~~~A~~~ 389 (418)
+..-++. ....+..+|+.. .+--.+-|+.++..+.+.|...
T Consensus 466 f~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 466 FGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred hccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 1111111 122355555532 2223468899998888887544
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.26 E-value=1.8e-10 Score=122.88 Aligned_cols=229 Identities=18% Similarity=0.193 Sum_probs=139.1
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHH--------hcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-------CcEE
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQ--------KLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-------ATFL 228 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~--------~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-------~~~~ 228 (418)
...|.|.+.+++.|.-++.........+. ...++...+|||.|+||||||.+|+++++... .++.
T Consensus 449 aP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred CCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 34578999988888766644332100000 01234445799999999999999999998653 3444
Q ss_pred EEccchhhhhhhcchHHHH---HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc------C-
Q 039866 229 KLAGPQLVQMFIGDGAKLV---RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G- 298 (418)
Q Consensus 229 ~i~~s~l~~~~~g~~~~~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~- 298 (418)
.+++..... +.+...+.+ .+.+.. ...++++|||++.+ +...+..|++++++-. +
T Consensus 529 ~vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 529 SVGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred cccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCc
Confidence 444443321 011000000 011111 22369999999999 6678888999886532 1
Q ss_pred -CCCCCCeEEEEEeCCCC-------------CCChhhhCCCCceeEEE-cCCCCHHHHHHHHHHHhhcC-----------
Q 039866 299 -FSSDDRIKVIAATNRAD-------------ILDPALMRSGRLDRKIE-LPHPSEEARARILQIHSRKM----------- 352 (418)
Q Consensus 299 -~~~~~~vivI~ttn~~~-------------~l~~~l~r~~Rf~~~i~-~~~p~~~~r~~il~~~~~~~----------- 352 (418)
..-+.++.||||+|+.. .|++++++ |||.++. ++.|+.+.=..|..+.+...
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~ 671 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGND 671 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHhhccccccccccc
Confidence 11235789999999852 47899999 9987544 45666543333322221100
Q ss_pred ----------------------------------------CCCC---CCCHHHHHH-----Hc-----------------
Q 039866 353 ----------------------------------------TVHP---DVNFEELAR-----ST----------------- 367 (418)
Q Consensus 353 ----------------------------------------~~~~---~~~~~~la~-----~~----------------- 367 (418)
.+.+ +..-..|.. +.
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~ 751 (915)
T PTZ00111 672 EDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQED 751 (915)
T ss_pred ccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence 0000 000111110 11
Q ss_pred --------------CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 368 --------------DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 368 --------------~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
...|.++|..+++-|-..|..+-+..|+.+|+..|++-+..+
T Consensus 752 ~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~s 807 (915)
T PTZ00111 752 DDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSS 807 (915)
T ss_pred cccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHH
Confidence 114679999999999999999999999999999999988753
No 202
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.26 E-value=4.3e-11 Score=122.21 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=149.6
Q ss_pred CceEEEeecccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhh-h--hcccccc-CCCCCCccccCcHHHHHHHH
Q 039866 103 GKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSR-V--KAMEVDE-KPTEDYNDIGGLEKQIQELI 178 (418)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~-~~~~~~~~i~G~~~~~~~l~ 178 (418)
...+++.+........+.....+..+++..+.++..+...+....... . ....... .....+..++|.+..++.+.
T Consensus 73 ~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~~l~~~~~~~~~~~lig~s~~~~~l~ 152 (445)
T TIGR02915 73 DTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLYTLETENRRLQSALGGTALRGLITSSPGMQKIC 152 (445)
T ss_pred CCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhhhhHHHHHHhhhhhhcccccceeecCHHHHHHH
Confidence 344566565444444444444555566655544433332222111100 0 0000001 11124567899999988888
Q ss_pred HHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh-----hcchHHH----
Q 039866 179 EAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF-----IGDGAKL---- 246 (418)
Q Consensus 179 ~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~-----~g~~~~~---- 246 (418)
..+... .....+++|+|++||||+++|++++... +.+|+.++|..+.... +|...+.
T Consensus 153 ~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~ 221 (445)
T TIGR02915 153 RTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGA 221 (445)
T ss_pred HHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCC
Confidence 766321 1244579999999999999999999876 5789999998764332 2211000
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CC----CCCCeEEEEEeCCC------
Q 039866 247 VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FS----SDDRIKVIAATNRA------ 314 (418)
Q Consensus 247 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~----~~~~vivI~ttn~~------ 314 (418)
.............++||||||+.| +...|..|+++++.... .. ...++.+|+||+..
T Consensus 222 ~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 290 (445)
T TIGR02915 222 VKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA 290 (445)
T ss_pred ccCCCCceeECCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH
Confidence 000000111233579999999999 77899999999976321 11 12367889998864
Q ss_pred -CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHhhcC----CCC-CCCC---HHHHHHHcCCCcHHHHHHHHHH
Q 039866 315 -DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHSRKM----TVH-PDVN---FEELARSTDDFNGAQLKAVCVE 381 (418)
Q Consensus 315 -~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~~~~----~~~-~~~~---~~~la~~~~g~s~~di~~l~~~ 381 (418)
..+.+.|.. |+. .+.+..|+..+|.+ ++..++..+ ... ...+ +..|..+.=..+.+++++++..
T Consensus 291 ~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~ 367 (445)
T TIGR02915 291 EGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKR 367 (445)
T ss_pred cCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 356666655 553 34555566655544 444444332 211 1223 3333333222344799999988
Q ss_pred HHHHHHHhCCCCccHHHH
Q 039866 382 AGMLALRRDATEVNHEDF 399 (418)
Q Consensus 382 A~~~A~~~~~~~It~~d~ 399 (418)
|...+ ....|+.+|+
T Consensus 368 a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 368 AVIMA---EGNQITAEDL 382 (445)
T ss_pred HHHhC---CCCcccHHHc
Confidence 87654 2334555554
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.26 E-value=5.4e-11 Score=100.18 Aligned_cols=126 Identities=32% Similarity=0.470 Sum_probs=80.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCc---EEEEccchhhhhh--------------hcchHHHHHHHHHHHHhCCCeE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGPQLVQMF--------------IGDGAKLVRDAFQLAKEKSPCI 261 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~---~~~i~~s~l~~~~--------------~g~~~~~~~~~~~~a~~~~~~v 261 (418)
+.+++|+||||||||++++.+|..+... ++.++++...... ...........+..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999664 8888887543321 1233445667888888877899
Q ss_pred EEEcCCCcccccCCCCCCCCCHHHHHHHHHH--HHhhcCCCCCCCeEEEEEeCC-CCCCChhhhCCCCceeEEEcCCC
Q 039866 262 IFIDEIDAIGTKRFDSEVSGDREVQRTMLEL--LNQLDGFSSDDRIKVIAATNR-ADILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 262 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~l--l~~~~~~~~~~~vivI~ttn~-~~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
|++||++.+.... ........ ...........+..+|+++|. ....+..+.. |++..+.++.+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999985321 11111110 000011122346778888886 3334444444 77777777654
No 204
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.26 E-value=2.7e-10 Score=116.77 Aligned_cols=218 Identities=21% Similarity=0.263 Sum_probs=134.7
Q ss_pred cccccCCCCCCccccCcHHHHHHHHHHhhcc--ccchHHHHhc-------------------CCCCCCCceeecCCCCcH
Q 039866 154 MEVDEKPTEDYNDIGGLEKQIQELIEAIVLP--MTHKERFQKL-------------------GVRPPKGVLLYGPPGTGK 212 (418)
Q Consensus 154 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~--l~~~~~~~~~-------------------g~~~~~~vLl~Gp~GtGK 212 (418)
..+++..+..|.++.|-+..=+.+..++... ......+.++ +-++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 3445556678999999998888887777532 1111111111 112334489999999999
Q ss_pred HHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHH--H--HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 213 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL--A--KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 213 T~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~--a--~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
||||+.+|++.|..++.||.|+-...- .....+..+... + ....|..|++||||-. .+...++
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~~Vdv 406 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRAAVDV 406 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHHHHHH
Confidence 999999999999999999998643210 001111111111 1 1245788999999965 4556677
Q ss_pred HHHHHHh--hcCCCCCC--------------CeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC
Q 039866 289 MLELLNQ--LDGFSSDD--------------RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM 352 (418)
Q Consensus 289 l~~ll~~--~~~~~~~~--------------~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 352 (418)
++.++.. ........ .-.||+.+|.. ..|+|+.---|..++.|++|...-..+-|+..+..-
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhh
Confidence 7777762 11111111 23488999954 456665321477899999999887777777776655
Q ss_pred CCCCC-CCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 039866 353 TVHPD-VNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 390 (418)
Q Consensus 353 ~~~~~-~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~ 390 (418)
++.-+ ..+..|+.. +..||+..++.....+....
T Consensus 485 ~mr~d~~aL~~L~el----~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 485 NMRADSKALNALCEL----TQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred cCCCCHHHHHHHHHH----hcchHHHHHHHHHHHHHhcc
Confidence 54421 234444444 44588888877766665443
No 205
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=1.8e-10 Score=120.38 Aligned_cols=222 Identities=11% Similarity=0.156 Sum_probs=123.1
Q ss_pred ccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE-Ec--
Q 039866 155 EVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK-LA-- 231 (418)
Q Consensus 155 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~-i~-- 231 (418)
...+..+..+++++|+++.++.+..++..... +..+.+.++|+||||+|||++++.+|..++..++. .+
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 34455678899999999999999887743311 22344459999999999999999999988654433 11
Q ss_pred -cchhhh---------hhhc---chHHHHHHHHHHHH----------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 232 -GPQLVQ---------MFIG---DGAKLVRDAFQLAK----------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 232 -~s~l~~---------~~~g---~~~~~~~~~~~~a~----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
|..... ..++ .....++.++..+. .....||+|||++.+... ... .
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~---~ 214 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTR---A 214 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHH---H
Confidence 110000 0000 11122333333333 124579999999987532 111 2
Q ss_pred HHHHHH-hhcCCCCCCCeEEEEEeCC-CC--------C------CChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC
Q 039866 289 MLELLN-QLDGFSSDDRIKVIAATNR-AD--------I------LDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM 352 (418)
Q Consensus 289 l~~ll~-~~~~~~~~~~vivI~ttn~-~~--------~------l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 352 (418)
+..+|. ... ..+.+.+|++++. +. . +.+++++..|+ .+|.|++.+.....+.|+..+...
T Consensus 215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 223333 111 1233444444431 11 1 33778753355 489999999999877777776542
Q ss_pred CC--CC------CCCHHHHHHHcCCCcHHHHHHHHHHHHHHHH-------HhCCCCccHHHHHHHH
Q 039866 353 TV--HP------DVNFEELARSTDDFNGAQLKAVCVEAGMLAL-------RRDATEVNHEDFNEGI 403 (418)
Q Consensus 353 ~~--~~------~~~~~~la~~~~g~s~~di~~l~~~A~~~A~-------~~~~~~It~~d~~~Al 403 (418)
.. .. ...+..++.... +|++.++......+. ..+...++..++..+.
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred hhccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 11 11 123455555444 466665554333322 2233456666655553
No 206
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.22 E-value=1.2e-10 Score=119.81 Aligned_cols=211 Identities=25% Similarity=0.326 Sum_probs=132.3
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF 239 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~ 239 (418)
.+.+++|....++.+...+.... ....+++++|++|||||++|++++... +.+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 46789999999888887664211 245579999999999999999999986 5799999998764322
Q ss_pred -----hcchHHHH-------HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC--CC----
Q 039866 240 -----IGDGAKLV-------RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS---- 301 (418)
Q Consensus 240 -----~g~~~~~~-------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~---- 301 (418)
+|...+.. ...++ ....+.|||||++.+ +...|..|+++++..... ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 22211100 01122 223469999999999 778899999999764311 11
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhCCCCce-eEEEcCCCCH--HHHHHHHHHHhhcC----CCC-CCCC---HHHH
Q 039866 302 DDRIKVIAATNRA-------DILDPALMRSGRLD-RKIELPHPSE--EARARILQIHSRKM----TVH-PDVN---FEEL 363 (418)
Q Consensus 302 ~~~vivI~ttn~~-------~~l~~~l~r~~Rf~-~~i~~~~p~~--~~r~~il~~~~~~~----~~~-~~~~---~~~l 363 (418)
..++.+|+||+.. ..+.+.|.. |+. ..|.+|++.. ++...++..++... ... .... +..|
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 348 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 2367889998753 356677776 663 3444444432 33444555555432 111 1122 3333
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 364 ARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 364 a~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
..+.=..+.++|++++..|...+ ....|+.+|+...+
T Consensus 349 ~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 33322223478999988877665 45678888876444
No 207
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.21 E-value=1.7e-10 Score=103.65 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=111.7
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-C----CcEEEE
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-N----ATFLKL 230 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-~----~~~~~i 230 (418)
+.+..+..+.+|+|.++.+..+.-.... | .-.+++|.||||||||+-+.++|+++ | -.++.+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 4445567789999999999988765522 1 22379999999999999999999987 3 345666
Q ss_pred ccchhhhhhhcchHHHHHHHHHHHHhC-CC---eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 231 AGPQLVQMFIGDGAKLVRDAFQLAKEK-SP---CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 231 ~~s~l~~~~~g~~~~~~~~~~~~a~~~-~~---~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
|.|+-.+-- .-+..-..|..-+-. +| .|+++||+|.+. ...|+.|.+.++-.. ..+.
T Consensus 85 NASdeRGID---vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS-----~ttR 145 (333)
T KOG0991|consen 85 NASDERGID---VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYS-----NTTR 145 (333)
T ss_pred cCccccccH---HHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHc-----ccch
Confidence 666432210 011111233333322 22 599999999983 345667766665432 2345
Q ss_pred EEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 307 VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 307 vI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
+..++|....+-..+.+ |+. .+.|...+..+...-+........+. .+..++.+...+.|
T Consensus 146 FalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 77888888888777877 774 66777777766554444333332222 23345555554444
No 208
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.20 E-value=4.3e-12 Score=104.80 Aligned_cols=115 Identities=27% Similarity=0.340 Sum_probs=65.1
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccc-hhh-hhhhcchHHHH-HHHHHHHH-hCCCeEEEEcCCCcccccCCC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP-QLV-QMFIGDGAKLV-RDAFQLAK-EKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s-~l~-~~~~g~~~~~~-~~~~~~a~-~~~~~vl~iDEid~l~~~~~~ 276 (418)
++||.|+||+|||++|+++|+.++..|.+|.+. ++. +...|..--.. ...|.... .--..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999999874 332 22222210000 00000000 000259999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhhcC------CCCCCCeEEEEEeCCCC-----CCChhhhCCCCce
Q 039866 277 SEVSGDREVQRTMLELLNQLDG------FSSDDRIKVIAATNRAD-----ILDPALMRSGRLD 328 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll~~~~~------~~~~~~vivI~ttn~~~-----~l~~~l~r~~Rf~ 328 (418)
.+..|..+++.+.+..- ..-...+.||+|-|+.+ .++.+++. ||-
T Consensus 75 -----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 75 -----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred -----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 67889999999987432 22345688999999866 68888888 873
No 209
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.19 E-value=1.9e-10 Score=109.11 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=133.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
.+...|+.++|.+..++.+.+.... +.. -...+||.|.+||||-.+||+.+... ..||+.+||..+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k-------~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQK-------LAM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHH-------hhc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 3556799999999999888775531 111 22359999999999999999998866 689999999766
Q ss_pred hhh-----hhcchH--HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CCC----C
Q 039866 236 VQM-----FIGDGA--KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS----D 302 (418)
Q Consensus 236 ~~~-----~~g~~~--~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~----~ 302 (418)
... .+|..+ .....+|+.+... .+|+|||..+ ++..|..|+++|+.+.- ... .
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEE
Confidence 543 334433 3345688888665 8999999998 78899999999986421 111 2
Q ss_pred CCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHHH--------HHHHHhhcCCCC-CCCCHHHHHHH
Q 039866 303 DRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARAR--------ILQIHSRKMTVH-PDVNFEELARS 366 (418)
Q Consensus 303 ~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~--------il~~~~~~~~~~-~~~~~~~la~~ 366 (418)
-+|.||+||..+ ..+...+.- |+ .++.+..|...+|.. +++.++.++.+. +..+...+...
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfy--RL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFY--RL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHH--Hh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 278899999753 244455544 55 367777777766643 344555555544 22222222221
Q ss_pred -cCCCcH--HHHHHHHHHHHHHH
Q 039866 367 -TDDFNG--AQLKAVCVEAGMLA 386 (418)
Q Consensus 367 -~~g~s~--~di~~l~~~A~~~A 386 (418)
..+|.| +++.+.+-+|....
T Consensus 410 ~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 410 TRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHcCCCccHHHHHHHHHHHHHHh
Confidence 123444 78888887777665
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.19 E-value=1.5e-10 Score=101.70 Aligned_cols=134 Identities=25% Similarity=0.338 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc----------------------
Q 039866 169 GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---------------------- 226 (418)
Q Consensus 169 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~---------------------- 226 (418)
|++.+++.+...+... +-|+.+||+||+|+||+++|+++|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7888888888877432 356679999999999999999999986221
Q ss_pred -EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 039866 227 -FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 301 (418)
Q Consensus 227 -~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 301 (418)
++.++...... .-.-..++.+...+.. ..+.|++||++|.| ..+.++.|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 12221111000 0122344555554432 34579999999999 67888888888885 4
Q ss_pred CCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCC
Q 039866 302 DDRIKVIAATNRADILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 302 ~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
..++++|++|+.++.+.|++++ |+ ..+.|+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 4688999999999999999999 88 46777654
No 211
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8.1e-10 Score=108.45 Aligned_cols=223 Identities=20% Similarity=0.254 Sum_probs=150.5
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-----CcEEEEccchhhh-
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAGPQLVQ- 237 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i~~s~l~~- 237 (418)
-..+.|.+..+..+.+++...+.. ..++++.+.|-||||||.+...+...+. ...+++||..+..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 356889999999999988665543 5778999999999999999998776652 2447888864321
Q ss_pred -----h----h----hcchHH-HHHHHHHH-HHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 039866 238 -----M----F----IGDGAK-LVRDAFQL-AKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 301 (418)
Q Consensus 238 -----~----~----~g~~~~-~~~~~~~~-a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 301 (418)
+ + .+.+.+ .....|+. .... .+-|+++||+|.|+... +..++.++..-. -.
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp~--lp 286 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWPK--LP 286 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhccc--CC
Confidence 1 1 121111 11122322 2222 36799999999997432 235555554321 23
Q ss_pred CCCeEEEEEeCCCCCCC---hhhhC-CCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCC--CCCHHHHHHHcCCCcH--H
Q 039866 302 DDRIKVIAATNRADILD---PALMR-SGRLDRKIELPHPSEEARARILQIHSRKMTVHP--DVNFEELARSTDDFNG--A 373 (418)
Q Consensus 302 ~~~vivI~ttn~~~~l~---~~l~r-~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~la~~~~g~s~--~ 373 (418)
+.++++|+.+|..+.=| |.|.. .+--+..+.|++++.++..+|++..+....... +..+...|+...|.|| +
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHH
Confidence 46888999999766433 33332 223445899999999999999999998766552 3346777888888887 4
Q ss_pred HHHHHHHHHHHHHHHhCC----------------CCccHHHHHHHHHHHHH
Q 039866 374 QLKAVCVEAGMLALRRDA----------------TEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 374 di~~l~~~A~~~A~~~~~----------------~~It~~d~~~Al~~~~~ 408 (418)
.+-.+|+.|...+....+ ..|..+++..++.++..
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 555788888888866532 24567888888887765
No 212
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.17 E-value=5.9e-10 Score=108.31 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=108.4
Q ss_pred CCc-cccCcHHHHHHHHHHhhccccchHHHHhcCCC-CCCCceeecCCCCcHHHHHHHHHHHhCC-------cEEEEcc-
Q 039866 163 DYN-DIGGLEKQIQELIEAIVLPMTHKERFQKLGVR-PPKGVLLYGPPGTGKTLMARACAAQTNA-------TFLKLAG- 232 (418)
Q Consensus 163 ~~~-~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLl~Gp~GtGKT~lakala~~l~~-------~~~~i~~- 232 (418)
-|+ ++.|+++++.++.+.+.... .|.. ..+.++|+||||+|||++|+++++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 355 89999999999998875432 2222 3356899999999999999999998854 7777754
Q ss_pred ---chhhhhhhcchHH----------------------------------------------------------------
Q 039866 233 ---PQLVQMFIGDGAK---------------------------------------------------------------- 245 (418)
Q Consensus 233 ---s~l~~~~~g~~~~---------------------------------------------------------------- 245 (418)
+.+.+..++-...
T Consensus 120 ~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 120 GEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence 2221110000000
Q ss_pred --HHHHHHH----------------------HHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 039866 246 --LVRDAFQ----------------------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 301 (418)
Q Consensus 246 --~~~~~~~----------------------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 301 (418)
.+..+.. .....+.+|+-|+|+.++ +.+++..|+.++++..-...
T Consensus 200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~ 268 (361)
T smart00763 200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGT 268 (361)
T ss_pred cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecC
Confidence 0010100 000111258888888887 77888888888886433211
Q ss_pred ------CCCeEEEEEeCCCC-------CCChhhhCCCCceeEEEcCCC-CHHHHHHHHHHHhhc
Q 039866 302 ------DDRIKVIAATNRAD-------ILDPALMRSGRLDRKIELPHP-SEEARARILQIHSRK 351 (418)
Q Consensus 302 ------~~~vivI~ttn~~~-------~l~~~l~r~~Rf~~~i~~~~p-~~~~r~~il~~~~~~ 351 (418)
.-+.+||++||..+ ....+|++ |+. .+.+|.| +.++-.+|.+..+..
T Consensus 269 ~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 269 GGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred CcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 12467899999763 55789988 996 8888866 567777888877753
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=1.5e-09 Score=105.20 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=92.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcE--EEEccc--------------hhh--hhhhcc--hHHHHHHHHHHHH-
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATF--LKLAGP--------------QLV--QMFIGD--GAKLVRDAFQLAK- 255 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~--~~i~~s--------------~l~--~~~~g~--~~~~~~~~~~~a~- 255 (418)
+-++.+||+||+|+||+++|+++|+.+-+.- -.-.|. ++. ....|. .-..++.+.+.+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 3466899999999999999999999873311 000111 110 000011 2334455544443
Q ss_pred ---hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEE
Q 039866 256 ---EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 332 (418)
Q Consensus 256 ---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~ 332 (418)
.+...|++||++|.+ +....+.|+..|++ ++.++++|.+|+.++.+.|++++ |+ ..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----PRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred ccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 234579999999999 55667777777764 45678899999999999999999 88 5889
Q ss_pred cCCCCHHHHHHHHHHH
Q 039866 333 LPHPSEEARARILQIH 348 (418)
Q Consensus 333 ~~~p~~~~r~~il~~~ 348 (418)
|++|+.++..+.+...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999888777654
No 214
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.14 E-value=2.7e-10 Score=116.92 Aligned_cols=213 Identities=24% Similarity=0.318 Sum_probs=132.7
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh-
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF- 239 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~- 239 (418)
+..++|.......+...+.... .....+++.|++||||+++|++++... +.+|+.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 4568899988888877663311 234579999999999999999999875 5799999998764332
Q ss_pred ----hcchHHH----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC--C----CCCCe
Q 039866 240 ----IGDGAKL----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--S----SDDRI 305 (418)
Q Consensus 240 ----~g~~~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~----~~~~v 305 (418)
+|...+. .............++||||||+.+ +...|..|+++++..... . ...++
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 2211100 000000111233579999999999 678899999999764311 1 12267
Q ss_pred EEEEEeCCC-------CCCChhhhCCCCcee-EEEcCCCC--HHHHHHHHHHHhhcC----CCC-CCCCHHHHHHH-cCC
Q 039866 306 KVIAATNRA-------DILDPALMRSGRLDR-KIELPHPS--EEARARILQIHSRKM----TVH-PDVNFEELARS-TDD 369 (418)
Q Consensus 306 ivI~ttn~~-------~~l~~~l~r~~Rf~~-~i~~~~p~--~~~r~~il~~~~~~~----~~~-~~~~~~~la~~-~~g 369 (418)
.+|++|+.. ..+.+.|.. |+.. .|.+|++. .++...++..++... ... ...+...+... ..+
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 788888753 245566665 6542 66666655 345555666655432 111 12233333221 224
Q ss_pred CcH--HHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNG--AQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~--~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
|.| ++|++++..|...+ ....|+.+|+...+
T Consensus 349 wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred CCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 544 79999998887765 45678888886555
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.13 E-value=8.1e-10 Score=113.18 Aligned_cols=210 Identities=22% Similarity=0.281 Sum_probs=127.9
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF 239 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~ 239 (418)
.+..++|.+..+..+.+.+.... ....+++++|++||||+++|++++... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA-----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc-----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 45568888888888777653221 234579999999999999999998875 5799999998764332
Q ss_pred -----hcchHHHH-------HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CCC----
Q 039866 240 -----IGDGAKLV-------RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS---- 301 (418)
Q Consensus 240 -----~g~~~~~~-------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~---- 301 (418)
+|...+.. ...+.. ...++||||||+.+ +...|..|+.+++.... ...
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 22111000 011222 23469999999999 67889999999875321 111
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHhhcCC----CC-CCCCHH---H
Q 039866 302 DDRIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHSRKMT----VH-PDVNFE---E 362 (418)
Q Consensus 302 ~~~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~~~~~----~~-~~~~~~---~ 362 (418)
..++.+|+|||.. ..+.+.+.. |+. .+.+..|+..+|.+ ++..++..+. .. ...+.. .
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 2357899999854 245555554 453 45666666666543 4444443321 11 122322 3
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 363 LARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 363 la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+..+.=..+.+++++++..|...+ ....|+.+|+...+
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 332221224478888888877654 44567777765433
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.9e-09 Score=105.42 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=91.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCc--EEEEccc--------------hhhhhhh-c----chHHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNAT--FLKLAGP--------------QLVQMFI-G----DGAKLVRDAFQLAK 255 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~--~~~i~~s--------------~l~~~~~-g----~~~~~~~~~~~~a~ 255 (418)
+.++.+||+||+|+||+++|.++|+.+-+. --.-.|. ++..-.. + -.-..++.+.+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 456689999999999999999999987331 0000111 1100000 0 01233455544443
Q ss_pred ----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEE
Q 039866 256 ----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKI 331 (418)
Q Consensus 256 ----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i 331 (418)
.....|++||++|.| +.+..+.|+..|++ ++.++++|.+|+.++.+.|++++ |+. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 344579999999999 56667777777764 45688899999999999999999 885 68
Q ss_pred EcCCCCHHHHHHHHHH
Q 039866 332 ELPHPSEEARARILQI 347 (418)
Q Consensus 332 ~~~~p~~~~r~~il~~ 347 (418)
.|++|+.++....+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 163 YLAPPPEQYALTWLSR 178 (334)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999887776653
No 217
>PRK15115 response regulator GlrR; Provisional
Probab=99.10 E-value=1.2e-09 Score=111.57 Aligned_cols=207 Identities=21% Similarity=0.285 Sum_probs=124.6
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhh-
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI- 240 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~- 240 (418)
..++|....+..+.+.+.... .....++|+|++|||||++|++++... +.+|+.++|..+.....
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~ 202 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA-----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE 202 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc-----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH
Confidence 357788777777666553221 233469999999999999999999875 57999999987643321
Q ss_pred ----cchHHH-------HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CCC----CC
Q 039866 241 ----GDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS----DD 303 (418)
Q Consensus 241 ----g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~----~~ 303 (418)
|...+. ....++ ....++|||||||.| +...|..|+.+++.... ... ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 203 SELFGHARGAFTGAVSNREGLFQ---AAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred HHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeee
Confidence 111000 001111 223469999999999 77889999999876421 111 22
Q ss_pred CeEEEEEeCCC-------CCCChhhhCCCCceeEEEcCCCCHHHHHH----HHHHHhhcC----CCC-CCCC---HHHHH
Q 039866 304 RIKVIAATNRA-------DILDPALMRSGRLDRKIELPHPSEEARAR----ILQIHSRKM----TVH-PDVN---FEELA 364 (418)
Q Consensus 304 ~vivI~ttn~~-------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~----il~~~~~~~----~~~-~~~~---~~~la 364 (418)
++.+|+||+.. ..+.+.+.. |+. .+.+..|+..+|.+ +++.++..+ ... ...+ +..|.
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~l~~--~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (444)
T PRK15115 269 DVRIISATHRDLPKAMARGEFREDLYY--RLN-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 (444)
T ss_pred eEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 67889998853 133444443 442 45666677766643 445554432 111 1122 33343
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 365 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 365 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
.+.=..+.+++++++..|...+ ....|+.+++...
T Consensus 346 ~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 346 TASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 3332234578888888877654 4556777776543
No 218
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.09 E-value=1.4e-10 Score=99.13 Aligned_cols=126 Identities=27% Similarity=0.484 Sum_probs=84.4
Q ss_pred cCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEccchhhhhhhcchH
Q 039866 168 GGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLVQMFIGDGA 244 (418)
Q Consensus 168 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s~l~~~~~g~~~ 244 (418)
+|....++.+.+.+.... ....+|||+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 477888888888775332 2455799999999999999999999774 467777776543
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-C------CC
Q 039866 245 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-D------IL 317 (418)
Q Consensus 245 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~-~------~l 317 (418)
..+++.+ .+++|||+|+|.+ +.+.|..|.+++.... ..++.+|+++..+ . .+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTH
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccch
Confidence 2344444 4569999999999 7788899998888732 3455677776643 2 45
Q ss_pred ChhhhCCCCce-eEEEcCC
Q 039866 318 DPALMRSGRLD-RKIELPH 335 (418)
Q Consensus 318 ~~~l~r~~Rf~-~~i~~~~ 335 (418)
++.|.. |+. ..|.+|+
T Consensus 121 ~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 121 SPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp HHHHHH--HCSTCEEEE--
T ss_pred hHHHHH--HhCCCEEeCCC
Confidence 666665 554 2666654
No 219
>PRK08116 hypothetical protein; Validated
Probab=99.09 E-value=5.1e-10 Score=106.26 Aligned_cols=123 Identities=19% Similarity=0.271 Sum_probs=80.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcc----hHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD----GAKLVRDAFQLAKEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~----~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 271 (418)
+.+++|+||+|||||+||.++++.+ +.+++.++.+++...+... .......++.... ...+|+|||++.-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 7888999988877654321 1111223333333 33599999996431
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-CC----CChhhhCCCCc---eeEEEcCCCCH
Q 039866 272 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-DI----LDPALMRSGRL---DRKIELPHPSE 338 (418)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~-~~----l~~~l~r~~Rf---~~~i~~~~p~~ 338 (418)
.....+..|+.+++.... ....+|.|||.+ .. ++..+.+ |+ ...|.++.++.
T Consensus 192 ---------~t~~~~~~l~~iin~r~~----~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRYR----KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 133556778888876422 223478888864 22 4666776 64 33567777665
No 220
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=3.6e-09 Score=102.38 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=98.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcE-E---EEcc---------chhhhh-----hhcc------hHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATF-L---KLAG---------PQLVQM-----FIGD------GAKLVRDAFQ 252 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~-~---~i~~---------s~l~~~-----~~g~------~~~~~~~~~~ 252 (418)
+-|+.+||+||+|+||+++|.++|+.+-+.- . ...+ +++.-- ..|. .-..++.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 3466799999999999999999999763210 0 0000 111000 0010 1223455555
Q ss_pred HHHhC----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCce
Q 039866 253 LAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 328 (418)
Q Consensus 253 ~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~ 328 (418)
.+... ...|++||++|.+ +....+.|+..|++ +..++++|.+|+.++.+.|++++ |+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~~~fiL~~~~~~~lLpTIrS--RC- 164 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----PSPGRYLWLISAQPARLPATIRS--RC- 164 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----CCCCCeEEEEECChhhCchHHHh--hh-
Confidence 44332 3469999999999 56667777777774 44677888899999999999999 88
Q ss_pred eEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcH
Q 039866 329 RKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNG 372 (418)
Q Consensus 329 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~ 372 (418)
..+.|++|+.++....+... ..+ ..+...++..+.|..+
T Consensus 165 q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 58899999998877777542 222 1123345555655444
No 221
>PRK08181 transposase; Validated
Probab=99.06 E-value=1.1e-09 Score=103.60 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=81.4
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcch-HHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
...+++|+||||||||+||.+++.++ +..++.++.++++..+.... .......+.... .+.+|+|||++....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC-
Confidence 34579999999999999999999865 67888888888877653211 111223334333 346999999988743
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC----------CCChhhhCCCCce---eEEEcCCCCHHH
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD----------ILDPALMRSGRLD---RKIELPHPSEEA 340 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~----------~l~~~l~r~~Rf~---~~i~~~~p~~~~ 340 (418)
+...+..|+++++..... -.+|.|||.+- .+..++++ |+- ..+.|...+...
T Consensus 182 --------~~~~~~~Lf~lin~R~~~-----~s~IiTSN~~~~~w~~~~~D~~~a~aild--RL~h~~~~i~~~g~s~R~ 246 (269)
T PRK08181 182 --------DQAETSVLFELISARYER-----RSILITANQPFGEWNRVFPDPAMTLAAVD--RLVHHATIFEMNVESYRR 246 (269)
T ss_pred --------CHHHHHHHHHHHHHHHhC-----CCEEEEcCCCHHHHHHhcCCccchhhHHH--hhhcCceEEecCCccchh
Confidence 345567888998864332 13788888642 12344455 552 256666555443
Q ss_pred H
Q 039866 341 R 341 (418)
Q Consensus 341 r 341 (418)
+
T Consensus 247 ~ 247 (269)
T PRK08181 247 R 247 (269)
T ss_pred H
Confidence 3
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.7e-09 Score=105.64 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=92.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEE---EEccchhhhh------------hh---------------------
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFL---KLAGPQLVQM------------FI--------------------- 240 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~---~i~~s~l~~~------------~~--------------------- 240 (418)
+-++.+||+||+|+||+++|+++|+.+.+..- .-.|.....- ++
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 46778999999999999999999998744210 0011110000 00
Q ss_pred ---c---------chHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC
Q 039866 241 ---G---------DGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR 304 (418)
Q Consensus 241 ---g---------~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 304 (418)
| -.-..++.+...+.. ....|++||++|.+ +.+..+.|+..|++ ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE-----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCcC
Confidence 0 011234444444332 33469999999999 55666777777663 5568
Q ss_pred eEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHH
Q 039866 305 IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH 348 (418)
Q Consensus 305 vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~ 348 (418)
+++|.+|+.++.+.|++++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999999 98 68999999999888877653
No 223
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=8.6e-09 Score=99.70 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=91.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEE-EEccc--------------hhhhhhh---cc--hHHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFL-KLAGP--------------QLVQMFI---GD--GAKLVRDAFQLAKE 256 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~-~i~~s--------------~l~~~~~---g~--~~~~~~~~~~~a~~ 256 (418)
+-++.+||+||.|+||+++|+++|+.+-+.-. .-.|. ++..-.. |. .-..++.+...+..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 45668999999999999999999997632110 00111 1100000 11 12334444444432
Q ss_pred ----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEE
Q 039866 257 ----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 332 (418)
Q Consensus 257 ----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~ 332 (418)
....|++||++|.+ +....+.|+..|++ ++.++++|.+|+.++.+.|++++ |+ ..+.
T Consensus 103 ~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~ 163 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWV 163 (319)
T ss_pred CcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--cc-eeEe
Confidence 33579999999999 55667777777764 45678899999999999999999 88 5889
Q ss_pred cCCCCHHHHHHHHHH
Q 039866 333 LPHPSEEARARILQI 347 (418)
Q Consensus 333 ~~~p~~~~r~~il~~ 347 (418)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988877754
No 224
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.03 E-value=1.7e-08 Score=93.03 Aligned_cols=183 Identities=16% Similarity=0.234 Sum_probs=122.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-C--CcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-N--ATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-~--~~~~~i~~s~l 235 (418)
..+.+++.+++..+....+..... . ..-.++++|||+|+||-|.+.++.+++ | ..=+.+....+
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~-~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS-T------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc-c------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 344567778888888777766542 0 112379999999999999999999986 2 11111111111
Q ss_pred -------------hh--------hhhcchHH-HHHHHHHHHHh---------CCCeEEEEcCCCcccccCCCCCCCCCHH
Q 039866 236 -------------VQ--------MFIGDGAK-LVRDAFQLAKE---------KSPCIIFIDEIDAIGTKRFDSEVSGDRE 284 (418)
Q Consensus 236 -------------~~--------~~~g~~~~-~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~ 284 (418)
.+ .-.|...+ .+..+...+.+ ....|++|.|+|.| ..+
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T~d 142 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------TRD 142 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------hHH
Confidence 00 01222222 22333333322 23469999999999 567
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHH
Q 039866 285 VQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEEL 363 (418)
Q Consensus 285 ~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 363 (418)
.|..|.+-++... +++.+|..+|....+-+++++ |+ ..+.+|.|+.++...++...+.+-.+. +...+..+
T Consensus 143 AQ~aLRRTMEkYs-----~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 143 AQHALRRTMEKYS-----SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred HHHHHHHHHHHHh-----cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 7888877776532 467899999999999999998 77 578999999999999999988766655 33446677
Q ss_pred HHHcCCCcHH
Q 039866 364 ARSTDDFNGA 373 (418)
Q Consensus 364 a~~~~g~s~~ 373 (418)
+..+.|.-.+
T Consensus 215 a~kS~~nLRr 224 (351)
T KOG2035|consen 215 AEKSNRNLRR 224 (351)
T ss_pred HHHhcccHHH
Confidence 7776664443
No 225
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.02 E-value=4.6e-09 Score=109.39 Aligned_cols=195 Identities=15% Similarity=0.092 Sum_probs=135.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhhhhhhcchH--HHH--------HHHHHHHHhCCCeEEEEcCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQMFIGDGA--KLV--------RDAFQLAKEKSPCIIFIDEI 267 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~~~~~g~~~--~~~--------~~~~~~a~~~~~~vl~iDEi 267 (418)
.||+|.|++|||||+++++++..+. .||+.+..+.-....+|... ..+ ..++..+ ..+|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5799999999999999999999985 48888877665566666431 111 1122222 2369999999
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHHHhhcC--------CCCCCCeEEEEEeCCC---CCCChhhhCCCCceeEEEcCCC
Q 039866 268 DAIGTKRFDSEVSGDREVQRTMLELLNQLDG--------FSSDDRIKVIAATNRA---DILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 268 d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~vivI~ttn~~---~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
..+ ++.++..|++.++.... .....++++|++-|.. ..++++++. ||+..+.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 998 77888999999886421 1234578899985533 358899999 99999999988
Q ss_pred CHHHHH-------HHHHH--HhhcCCCCCCCCHHHHHHH--cCCC-cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 039866 337 SEEARA-------RILQI--HSRKMTVHPDVNFEELARS--TDDF-NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 337 ~~~~r~-------~il~~--~~~~~~~~~~~~~~~la~~--~~g~-s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 404 (418)
+..+.. .|... .+....++ +..+..++.. ..|. +.+--..+++.|..+|..+++..|+.+|+.+|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765432 23322 22222222 2223333321 2344 6677778889999999999999999999999999
Q ss_pred HHHHhhh
Q 039866 405 QVQAKKK 411 (418)
Q Consensus 405 ~~~~~~~ 411 (418)
-+...+.
T Consensus 249 lvL~hR~ 255 (584)
T PRK13406 249 LVLAPRA 255 (584)
T ss_pred HHHHhhc
Confidence 9887544
No 226
>PRK12377 putative replication protein; Provisional
Probab=99.02 E-value=2.3e-09 Score=100.20 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=68.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchH--HHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGA--KLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~--~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
..+++|+||||||||+||.++++.+ +..++.++.+++...+..... .....++... ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 3579999999999999999999987 677888888877765432110 0111233333 3446999999976532
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
....+..|+++++.... ....+|.|||..
T Consensus 178 --------s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 178 --------TKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred --------CHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 33456788888886432 223468889964
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.1e-09 Score=103.01 Aligned_cols=142 Identities=23% Similarity=0.388 Sum_probs=95.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhc-chHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIG-DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 276 (418)
+-.++||+||||+|||.||-.+|...+.||+.+-.++-+-.+.. ..-.++...|+.|...+-+||++|+|+.|..-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--- 613 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--- 613 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc---
Confidence 44569999999999999999999999999999876644322211 12245788999999999999999999998521
Q ss_pred CCCCCCHHHHHHHHHHH-HhhcCCCCCC-CeEEEEEeCCCCCCC-hhhhCCCCceeEEEcCCCCH-HHHHHHHH
Q 039866 277 SEVSGDREVQRTMLELL-NQLDGFSSDD-RIKVIAATNRADILD-PALMRSGRLDRKIELPHPSE-EARARILQ 346 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll-~~~~~~~~~~-~vivI~ttn~~~~l~-~~l~r~~Rf~~~i~~~~p~~-~~r~~il~ 346 (418)
..-| |...+.++|.| -.+...++.+ +.+|++||...+.+. -.++. -|+..+.+|..+. ++..+++.
T Consensus 614 -vpIG-PRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 614 -VPIG-PRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred -cccC-chhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 1222 23344444433 3334444444 566677776544332 23344 6888999987765 66666654
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.94 E-value=8.4e-09 Score=100.42 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=79.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcc---hHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD---GAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~---~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
..+++|+||||||||+||.++|+++ +..+++++.+++...+... ........+..... ..+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCCC
Confidence 3689999999999999999999987 7788899988887654321 01111112333333 35999999977632
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-C----CCChhhhCCCCcee---EEEcCCCCH
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-D----ILDPALMRSGRLDR---KIELPHPSE 338 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~-~----~l~~~l~r~~Rf~~---~i~~~~p~~ 338 (418)
....+..|+.+++..-.. +..+|.|||.+ . .+++.+.+ |+.. .+.|...+.
T Consensus 261 ---------t~~~~~~Lf~iin~R~~~----~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRLLR----QKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDI 319 (329)
T ss_pred ---------CHHHHHHHHHHHHHHHHC----CCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcCh
Confidence 445667788888764321 12367888853 2 24566666 6532 455544443
No 229
>PRK06526 transposase; Provisional
Probab=98.93 E-value=2.9e-09 Score=100.19 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=66.8
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcch-HHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
.+.+++|+||||||||++|.+++.++ +..++.+.+++++....... .+.....+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 34579999999999999999998876 66777777777665542111 11111222222 3457999999998732
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+......++++++..... ..+|.|||.+
T Consensus 174 --------~~~~~~~L~~li~~r~~~-----~s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYER-----ASLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHhc-----CCEEEEcCCC
Confidence 345667888888764321 1367788865
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=9.2e-09 Score=100.20 Aligned_cols=131 Identities=24% Similarity=0.324 Sum_probs=91.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCc-------------------------EEEEccchhhhhhhc-----chHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNAT-------------------------FLKLAGPQLVQMFIG-----DGAKL 246 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~-------------------------~~~i~~s~l~~~~~g-----~~~~~ 246 (418)
+-++.+||+||+|+|||++|+.+|+.+.+. |+.+....- ....| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 456689999999999999999999987431 222221100 00001 01234
Q ss_pred HHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhh
Q 039866 247 VRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALM 322 (418)
Q Consensus 247 ~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~ 322 (418)
++.+.+.+.. ....|+++|+++.+ +...++.++.++++.. .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHH
Confidence 5666665543 33469999999999 7778888888887642 34667778888889999998
Q ss_pred CCCCceeEEEcCCCCHHHHHHHHHH
Q 039866 323 RSGRLDRKIELPHPSEEARARILQI 347 (418)
Q Consensus 323 r~~Rf~~~i~~~~p~~~~r~~il~~ 347 (418)
+ |+ ..+.|++|+.++....+..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 77 5889999999987776654
No 231
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.91 E-value=2.2e-08 Score=102.11 Aligned_cols=209 Identities=22% Similarity=0.248 Sum_probs=121.0
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhh--
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI-- 240 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~-- 240 (418)
.++|....+..+...+... ......++++|++||||+++|++++... +.+|+.++|+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 4677777777776655321 1244579999999999999999998765 57999999986643321
Q ss_pred ---cchHHHH----HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CCC----CCCeEE
Q 039866 241 ---GDGAKLV----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS----DDRIKV 307 (418)
Q Consensus 241 ---g~~~~~~----~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~----~~~viv 307 (418)
|...+.. ...........+++||||||+.| +...|..++.+++.... ... ..++.+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRL 277 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeeceEE
Confidence 2111100 00000112234579999999999 67888888888875321 111 225678
Q ss_pred EEEeCCCC-------CCChhhhCCCCceeEEEcCCCCHHHHH----HHHHHHhhcC----CCC-CCCCH---HHHHHHcC
Q 039866 308 IAATNRAD-------ILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKM----TVH-PDVNF---EELARSTD 368 (418)
Q Consensus 308 I~ttn~~~-------~l~~~l~r~~Rf~~~i~~~~p~~~~r~----~il~~~~~~~----~~~-~~~~~---~~la~~~~ 368 (418)
|++|+..- .+.+.|.. |+. .+.+..|+..+|. .++..++..+ ... ..... ..|..+.=
T Consensus 278 i~~t~~~~~~~~~~~~~~~~l~~--~l~-~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 354 (441)
T PRK10365 278 IAATHRDLAAEVNAGRFRQDLYY--RLN-VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 (441)
T ss_pred EEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCC
Confidence 88887531 23344433 332 4555566665553 3555555432 111 11233 33333221
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 039866 369 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 402 (418)
Q Consensus 369 g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~A 402 (418)
..+.++++++++.|...+ ....|+.+|+...
T Consensus 355 pgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 355 PGNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CCHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 224478888888876643 3455776666543
No 232
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.90 E-value=9e-09 Score=96.04 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcch---HHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG---AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~---~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
.+++|+||||||||+|+.++|+.+ +.+++.++.+++...+.+.. ......++.... .+.+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999988 77888888888876543321 111223444443 457999999987631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC-----CCChhhhC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD-----ILDPALMR 323 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~-----~l~~~l~r 323 (418)
.......++++++.... .+..+|.|||... .+...+.+
T Consensus 177 --------s~~~~~~l~~Ii~~Ry~----~~~~tiitSNl~~~~l~~~~g~ri~s 219 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRSS----SKRPTGMLTNSNMEEMTKLLGERVMD 219 (244)
T ss_pred --------CHHHHHHHHHHHHHHHh----CCCCEEEeCCCCHHHHHHHhChHHHH
Confidence 22344577788876321 2345788999642 34455555
No 233
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.90 E-value=1.1e-08 Score=96.31 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=107.9
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEE------E
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL------K 229 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~------~ 229 (418)
+...++....+++++++++..+.+....+ .-.+.|+|||||||||+...+.|+.+-++.- .
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 34455667889999999999988874222 2228999999999999999999998855411 1
Q ss_pred EccchhhhhhhcchHHHHHHHHHHHHh-------CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 039866 230 LAGPQLVQMFIGDGAKLVRDAFQLAKE-------KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD 302 (418)
Q Consensus 230 i~~s~l~~~~~g~~~~~~~~~~~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 302 (418)
++.|+-.+ ++ ..+..-..|...+. ..+..+++||+|.+ ..+.|+.|.+..... +
T Consensus 99 lnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~-----t 159 (360)
T KOG0990|consen 99 LNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKY-----T 159 (360)
T ss_pred hhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHh-----c
Confidence 11111100 01 11122234555543 25679999999999 567788888766543 3
Q ss_pred CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh
Q 039866 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR 350 (418)
Q Consensus 303 ~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~ 350 (418)
.++.++..+|.+..+.|++++ ||. .+.|.+.+.......+.+++.
T Consensus 160 ~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 160 ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 466677889999999999998 885 566777776666555555554
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.88 E-value=2.5e-09 Score=95.35 Aligned_cols=101 Identities=20% Similarity=0.325 Sum_probs=65.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcch-HHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
.+.+++|+||||||||++|.++++++ +.++..++.++++..+.... .......+..... +.+|+|||+.....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~~- 122 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEPL- 122 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceeee-
Confidence 45689999999999999999999876 78899999988877653221 1112234444443 35999999975421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
.......++++++.... + + .+|.|||..
T Consensus 123 --------~~~~~~~l~~ii~~R~~---~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 123 --------SEWEAELLFEIIDERYE---R-K-PTIITSNLS 150 (178)
T ss_dssp ---------HHHHHCTHHHHHHHHH---T---EEEEEESS-
T ss_pred --------cccccccchhhhhHhhc---c-c-CeEeeCCCc
Confidence 33456677888876432 1 1 367799953
No 235
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.87 E-value=6.1e-08 Score=99.72 Aligned_cols=209 Identities=13% Similarity=0.216 Sum_probs=121.0
Q ss_pred ccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch
Q 039866 155 EVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 234 (418)
Q Consensus 155 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~ 234 (418)
.++...+.+.++|.-+..-++++..++...+. +..+.+-+||+||||||||++++.+|++++..+..-..+.
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~ 80 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPV 80 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCC
Confidence 34445567788899999999999988864322 2233456888999999999999999999987776543221
Q ss_pred h-h------hhhhcc---hH---HH---HHHH-HHHHH-----------hCCCeEEEEcCCCcccccCCCCCCCCCHHHH
Q 039866 235 L-V------QMFIGD---GA---KL---VRDA-FQLAK-----------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 286 (418)
Q Consensus 235 l-~------~~~~g~---~~---~~---~~~~-~~~a~-----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~ 286 (418)
. . ..+.+. .. .. ...+ +...+ ...+.||+|+|+-.++... ...+.
T Consensus 81 ~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~ 153 (519)
T PF03215_consen 81 SFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFR 153 (519)
T ss_pred CccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHH
Confidence 1 0 011111 00 11 1111 11111 1235799999998765321 13445
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEe-C------CC--------CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 287 RTMLELLNQLDGFSSDDRIKVIAAT-N------RA--------DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 287 ~~l~~ll~~~~~~~~~~~vivI~tt-n------~~--------~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
..|.+++.... ..++++|.|- + .. ..+++.++...++ ..|.|.+-...-....|...+..
T Consensus 154 ~~L~~~l~~~~----~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 154 EALRQYLRSSR----CLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHcCC----CCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 55555554311 1166666661 1 11 1466777764455 58899988887776666655543
Q ss_pred C--------CCCCCCC-HHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 352 M--------TVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 352 ~--------~~~~~~~-~~~la~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
. ....... ++.|+..+ .+||+..+..-...+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 2 1111112 45565543 4588888877666665
No 236
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.7e-08 Score=105.42 Aligned_cols=227 Identities=26% Similarity=0.275 Sum_probs=134.2
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHh-cCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc-cchhhhhhhc
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQK-LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA-GPQLVQMFIG 241 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~-~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~-~s~l~~~~~g 241 (418)
...|.|.+.+++.|.-++...... ...+ ..++..-++||.|.||||||.|.+.+++-+...++.-. ++.-. |
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~----G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAA----G 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccccc----C
Confidence 456778888888776655333221 0000 00122246999999999999999999998755443322 21111 1
Q ss_pred chHHHHHHHH--HH------HHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC-C-------CCCCCe
Q 039866 242 DGAKLVRDAF--QL------AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-F-------SSDDRI 305 (418)
Q Consensus 242 ~~~~~~~~~~--~~------a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~-------~~~~~v 305 (418)
-++..++.-. +. .--..++|.+|||+|++ +..-...+.+.+++-.- + .-+.++
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 1111111000 00 01123579999999998 44556677777764211 1 113466
Q ss_pred EEEEEeCCCC-------------CCChhhhCCCCceeEEEcC-CCCHHHHH----HHHHHHhh-----------------
Q 039866 306 KVIAATNRAD-------------ILDPALMRSGRLDRKIELP-HPSEEARA----RILQIHSR----------------- 350 (418)
Q Consensus 306 ivI~ttn~~~-------------~l~~~l~r~~Rf~~~i~~~-~p~~~~r~----~il~~~~~----------------- 350 (418)
-|+|++|+.. .|+++|++ |||.++.+. .|+.+.=. .++..|..
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~ 505 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEE 505 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccccc
Confidence 7899999764 47899999 999866664 45543222 23333311
Q ss_pred --------------c-C-CCCCCCCHHHHHH-----H----------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 039866 351 --------------K-M-TVHPDVNFEELAR-----S----------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 399 (418)
Q Consensus 351 --------------~-~-~~~~~~~~~~la~-----~----------~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~ 399 (418)
. . +.-.+...+.|.. + +...|.+++..+++-|-+.|..+.+..|+.+|+
T Consensus 506 ~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~ 585 (682)
T COG1241 506 RDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDV 585 (682)
T ss_pred CcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 0 0 0001111111111 1 123578999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 039866 400 NEGIIQVQAK 409 (418)
Q Consensus 400 ~~Al~~~~~~ 409 (418)
.+|++-+...
T Consensus 586 ~eAi~lv~~~ 595 (682)
T COG1241 586 DEAIRLVDFS 595 (682)
T ss_pred HHHHHHHHHH
Confidence 9999998853
No 237
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.86 E-value=2.5e-09 Score=104.70 Aligned_cols=229 Identities=23% Similarity=0.233 Sum_probs=120.5
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccc----hhhhhh
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP----QLVQMF 239 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s----~l~~~~ 239 (418)
...|.|.+.++..|.-.+......... .....+..-++||.|.||||||.+.+.+++.....++....+ .+....
T Consensus 23 aP~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 23 APSIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASV 101 (331)
T ss_dssp SSTTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEE
T ss_pred CCcCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCcccee
Confidence 346889988887765444322211000 000012334799999999999999998876654444332211 111100
Q ss_pred hcc---hHHHH-HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC-C-------CCCCeEE
Q 039866 240 IGD---GAKLV-RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-S-------SDDRIKV 307 (418)
Q Consensus 240 ~g~---~~~~~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~-------~~~~viv 307 (418)
.-+ ++..+ .+.+-.+ ..+|++|||+|.+ ..+....|.+.++...-. . -+.++-|
T Consensus 102 ~~d~~~~~~~leaGalvla---d~GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLA---DGGICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CCCGGTSSECEEE-HHHHC---TTSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccccceeEEeCCchhcc---cCceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 000 00000 0122233 3359999999998 334567777877752111 1 1236779
Q ss_pred EEEeCCCC-------------CCChhhhCCCCceeEEEc-CCCCHHHHHHHHHHHhhcCCC----------------CCC
Q 039866 308 IAATNRAD-------------ILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMTV----------------HPD 357 (418)
Q Consensus 308 I~ttn~~~-------------~l~~~l~r~~Rf~~~i~~-~~p~~~~r~~il~~~~~~~~~----------------~~~ 357 (418)
++++|+.. .+++.+++ |||.++.+ ..|+.+.-..+..+.+..... +.+
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~ 245 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISED 245 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HC
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHH
Confidence 99999764 47889999 99988766 455654444444443332111 100
Q ss_pred CC-------------------HHHHHHH-------------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 358 VN-------------------FEELARS-------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 358 ~~-------------------~~~la~~-------------~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
.- ...|... ....|.+.+..+++-|...|..+.+..|+.+|+..|+.-
T Consensus 246 ~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L 325 (331)
T PF00493_consen 246 LLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRL 325 (331)
T ss_dssp CCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHH
Confidence 00 1111111 012345678899999999999999999999999999988
Q ss_pred HHHh
Q 039866 406 VQAK 409 (418)
Q Consensus 406 ~~~~ 409 (418)
+..+
T Consensus 326 ~~~S 329 (331)
T PF00493_consen 326 FEES 329 (331)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
No 238
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.85 E-value=7.8e-09 Score=105.43 Aligned_cols=185 Identities=24% Similarity=0.320 Sum_probs=110.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh--CCcEEEEccchhhhhh-----hcchHHH--------HHHHHHHHHhCCCeEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT--NATFLKLAGPQLVQMF-----IGDGAKL--------VRDAFQLAKEKSPCIIF 263 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l--~~~~~~i~~s~l~~~~-----~g~~~~~--------~~~~~~~a~~~~~~vl~ 263 (418)
.-.+++.|.|||||-.++++++... ..||+.+||..+.... +|..++. .+..++.+ ..+.+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A---~gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQA---DGGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceec---CCCccH
Confidence 3469999999999999999999876 5799999997665442 3332221 11222222 235999
Q ss_pred EcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-----CCCeEEEEEeCCCCCCChhhhCCCCcee-------EE
Q 039866 264 IDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-----DDRIKVIAATNRADILDPALMRSGRLDR-------KI 331 (418)
Q Consensus 264 iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-----~~~vivI~ttn~~~~l~~~l~r~~Rf~~-------~i 331 (418)
+|||..+ +...|..|+++|.+..-.+- .-++.||++|+++= ..+.+.|||.+ .+
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999998 67899999999987543322 23678999998641 23334445433 44
Q ss_pred EcCCCCHHHHHH---HHHHHhhcCC-CCCCCCHHHHHHH-cCCC--cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 332 ELPHPSEEARAR---ILQIHSRKMT-VHPDVNFEELARS-TDDF--NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 332 ~~~~p~~~~r~~---il~~~~~~~~-~~~~~~~~~la~~-~~g~--s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
.+..|+..+|.+ ++..++.+.. ..-..+-+.++.. ...| +-+++.+++..+...+ +...|...|+...+
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 455566655543 3333333222 1122333333321 2223 3478888887776655 33444444444333
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.8e-08 Score=93.51 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=68.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchHH-H-HHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAK-L-VRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~~-~-~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
.+.+++|+||||||||+||-|+++++ |.+++.+..++++......... . ...+..... ...+|+|||+.....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~~ 181 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEPF 181 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCccC
Confidence 45689999999999999999999987 7899999999998875433221 1 112222233 345999999987532
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+......+++++...-.. ... |.|||.+
T Consensus 182 ---------~~~~~~~~~q~I~~r~~~----~~~-~~tsN~~ 209 (254)
T COG1484 182 ---------SQEEADLLFQLISRRYES----RSL-IITSNLS 209 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHhh----ccc-eeecCCC
Confidence 334456666666543221 122 8899864
No 240
>PRK09183 transposase/IS protein; Provisional
Probab=98.84 E-value=1.3e-08 Score=96.13 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=67.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcc-hHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD-GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
...+++|+||||||||++|.+++..+ +..+..+++.++...+... ..+.+...+... ...+.+++|||++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~- 178 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF- 178 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC-
Confidence 45579999999999999999998764 6677788877776543221 111222334332 24567999999987632
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+.+....|+++++..... . .+|.|||.+
T Consensus 179 --------~~~~~~~lf~li~~r~~~---~--s~iiTsn~~ 206 (259)
T PRK09183 179 --------SQEEANLFFQVIAKRYEK---G--SMILTSNLP 206 (259)
T ss_pred --------ChHHHHHHHHHHHHHHhc---C--cEEEecCCC
Confidence 334556788888764322 1 267788854
No 241
>PF13173 AAA_14: AAA domain
Probab=98.84 E-value=2.7e-08 Score=83.78 Aligned_cols=118 Identities=25% Similarity=0.299 Sum_probs=73.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 277 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 277 (418)
+.++|+||+|||||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 3589999999999999999999876 78888888765442211111 1122222222255799999999872
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC----ChhhhCCCCceeEEEcCCCCHHH
Q 039866 278 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL----DPALMRSGRLDRKIELPHPSEEA 340 (418)
Q Consensus 278 ~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l----~~~l~r~~Rf~~~i~~~~p~~~~ 340 (418)
++...+..+.+.. .++.+|+|+.....+ ...+ .||.. .+.+.+++..|
T Consensus 75 ------~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 4555566666532 234455555433322 2333 34764 77888888765
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.84 E-value=1.7e-08 Score=97.60 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=65.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcch-HHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
...+++|+||+|||||+|+.++|+++ +.++..+..++++..+.... .+.....+.... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 45689999999999999999999988 77888888888776543221 111223444443 345999999976421
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 274 RFDSEVSGDREVQ-RTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 274 ~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
..... ..+..+++..- ..+..+|.|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 22333 34445555321 1234578899954
No 243
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.82 E-value=7.3e-08 Score=98.53 Aligned_cols=228 Identities=21% Similarity=0.246 Sum_probs=129.1
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcC-CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc-chhhhh--hhc
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG-PQLVQM--FIG 241 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~-s~l~~~--~~g 241 (418)
.|.|++++|+.+.-.+.-.... -+...| .+..-++||+|.||||||.+.+.+++-+....+.-.. +.-.+. |+.
T Consensus 430 sIye~edvKkglLLqLfGGt~k--~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRK--EDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcc--cccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 3567777777665554322111 111212 2333479999999999999999999987554433221 111100 000
Q ss_pred chHHHHHHHHHH---HHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc------C--CCCCCCeEEEEE
Q 039866 242 DGAKLVRDAFQL---AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAA 310 (418)
Q Consensus 242 ~~~~~~~~~~~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~vivI~t 310 (418)
... ..+++... .--...+|.+|||+|++ +...+..|.+.+++=. + ..-+.++-|+|+
T Consensus 508 rd~-dtkqlVLesGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAa 575 (804)
T KOG0478|consen 508 KDP-DTRQLVLESGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAA 575 (804)
T ss_pred ecC-ccceeeeecCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeee
Confidence 000 00001000 00122469999999999 3345677888876411 1 122456779999
Q ss_pred eCCCC-------------CCChhhhCCCCceeEEE-cCCCCHHHHHHHHHHHhhc-------------------------
Q 039866 311 TNRAD-------------ILDPALMRSGRLDRKIE-LPHPSEEARARILQIHSRK------------------------- 351 (418)
Q Consensus 311 tn~~~-------------~l~~~l~r~~Rf~~~i~-~~~p~~~~r~~il~~~~~~------------------------- 351 (418)
.|+.. .|+|.|++ ||+.++- +..||...=+.+..+...-
T Consensus 576 ANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yA 653 (804)
T KOG0478|consen 576 ANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYA 653 (804)
T ss_pred eccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHH
Confidence 99642 57899999 9997544 4566655222222221110
Q ss_pred -CCCC---CCCCHHHHHH-----H----cCC---CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 352 -MTVH---PDVNFEELAR-----S----TDD---FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 352 -~~~~---~~~~~~~la~-----~----~~g---~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
.++. .+.....+.. + ..| -+++++..|.+.+...|.-+....+...|+.+|+.-....
T Consensus 654 rk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 654 RKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred hccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 0001 1111111111 0 112 3467899999999999998999999999999999877763
No 244
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.81 E-value=3.9e-08 Score=99.72 Aligned_cols=232 Identities=20% Similarity=0.194 Sum_probs=135.4
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch----hhhh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ----LVQM 238 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~----l~~~ 238 (418)
.|..|.|.+.++..|.-.+.-....... ....++..-+|++.|.||||||-+.++++.-+.+.+|...-.. +...
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 5667888888888776655332221111 1222334446999999999999999999998866655443211 1111
Q ss_pred hhcchHHHHHHHHH--HHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc-CC-------CCCCCeEEE
Q 039866 239 FIGDGAKLVRDAFQ--LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD-GF-------SSDDRIKVI 308 (418)
Q Consensus 239 ~~g~~~~~~~~~~~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~-------~~~~~vivI 308 (418)
.+.+.+..- -.++ ..--...+|.+|||+|++ +..-+..+.+.+++=. .+ .-+.+.-||
T Consensus 422 VvkD~esgd-f~iEAGALmLADnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 422 VVKDEESGD-FTIEAGALMLADNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EEecCCCCc-eeeecCcEEEccCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 111111100 0000 000122369999999999 3223556666665311 11 112355689
Q ss_pred EEeCCCC-------------CCChhhhCCCCceeE-EEcCCCCHHHHHHHHHHHhhcCC---------------------
Q 039866 309 AATNRAD-------------ILDPALMRSGRLDRK-IELPHPSEEARARILQIHSRKMT--------------------- 353 (418)
Q Consensus 309 ~ttn~~~-------------~l~~~l~r~~Rf~~~-i~~~~p~~~~r~~il~~~~~~~~--------------------- 353 (418)
|++|+.. .+.+++++ |||.. |-+..|++..=..|-++.+....
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi 567 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYI 567 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHH
Confidence 9999752 47899999 99974 44466766544443333322100
Q ss_pred -----CCCCC---CHHHHHH---------------HcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 354 -----VHPDV---NFEELAR---------------STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 354 -----~~~~~---~~~~la~---------------~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
+.+.. .-..+.. .+.+.|.++|+.+++-+-..|....+..||.+|+.+|++-+..+
T Consensus 568 ~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~S 646 (764)
T KOG0480|consen 568 RYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKS 646 (764)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhh
Confidence 00000 0011111 12245679999999999999999999999999999999888763
No 245
>PRK06921 hypothetical protein; Provisional
Probab=98.80 E-value=3.4e-08 Score=93.69 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCc-ccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA-IGT 272 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~-l~~ 272 (418)
...+++|+||||||||+|+.++|+++ +..++++...+++..+.... ......+... ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 35679999999999999999999976 56777777766655432211 1112222333 2346999999954 111
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
.. .........|+.+++..... +..+|.|||.
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~~~----~k~tIitsn~ 224 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRYLN----HKPILISSEL 224 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHHHC----CCCEEEECCC
Confidence 10 01223345677888764321 1225778885
No 246
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.78 E-value=1.5e-07 Score=87.18 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 279 (418)
.+-.++||+|||||+++|.+|+.+|.+++.++|++-++. ..+.+++..+... .+.++|||++++
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl--------- 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL--------- 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS---------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh---------
Confidence 456789999999999999999999999999999876543 3344555444332 359999999999
Q ss_pred CCCHHHHHHHHHHHHhh----cCC-----------CCCCCeEEEEEeCCC----CCCChhhhCCCCceeEEEcCCCCHHH
Q 039866 280 SGDREVQRTMLELLNQL----DGF-----------SSDDRIKVIAATNRA----DILDPALMRSGRLDRKIELPHPSEEA 340 (418)
Q Consensus 280 ~~~~~~~~~l~~ll~~~----~~~-----------~~~~~vivI~ttn~~----~~l~~~l~r~~Rf~~~i~~~~p~~~~ 340 (418)
+.++...+.+.+..+ ... .-+.++-++.|.|+. ..+++.++. .| +.+.+..||...
T Consensus 97 --~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~ 171 (231)
T PF12774_consen 97 --SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSL 171 (231)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHH
T ss_pred --hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHH
Confidence 667777666555432 110 112245567777754 367777765 44 789999999887
Q ss_pred HHHHH
Q 039866 341 RARIL 345 (418)
Q Consensus 341 r~~il 345 (418)
..+++
T Consensus 172 I~ei~ 176 (231)
T PF12774_consen 172 IAEIL 176 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 247
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.78 E-value=2e-08 Score=92.62 Aligned_cols=182 Identities=23% Similarity=0.357 Sum_probs=96.7
Q ss_pred cCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC---cEEEEcc-chhh----hhh
Q 039866 168 GGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA---TFLKLAG-PQLV----QMF 239 (418)
Q Consensus 168 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~---~~~~i~~-s~l~----~~~ 239 (418)
+|.+..++.|.+.+.. .+...++|+||.|+|||++++.+.+.+.. ..++++. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5788888888876632 24557999999999999999999998732 1111211 1000 000
Q ss_pred -------------h-----------------cchHHHHHHHHHHHHhCC-CeEEEEcCCCccc-ccCCCCCCCCCHHHHH
Q 039866 240 -------------I-----------------GDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIG-TKRFDSEVSGDREVQR 287 (418)
Q Consensus 240 -------------~-----------------g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~-~~~~~~~~~~~~~~~~ 287 (418)
. ......+..++..+.... ..||+|||++.+. ... .......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 0 011233445555555433 3899999999996 211 1344555
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEeCCCC------CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC---CCC
Q 039866 288 TMLELLNQLDGFSSDDRIKVIAATNRAD------ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH---PDV 358 (418)
Q Consensus 288 ~l~~ll~~~~~~~~~~~vivI~ttn~~~------~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~ 358 (418)
.+..+++. .....++.+|+++.... .-...+.. |+.. +.+++.+.++..+++...+... .. ++.
T Consensus 143 ~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 143 SLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 55555554 22234444444443211 11233434 7766 9999999999999999887665 21 345
Q ss_pred CHHHHHHHcCCCcHHHHH
Q 039866 359 NFEELARSTDDFNGAQLK 376 (418)
Q Consensus 359 ~~~~la~~~~g~s~~di~ 376 (418)
++..+...+.|. |+-|.
T Consensus 216 ~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCCC-HHHHh
Confidence 567777777764 44443
No 248
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.75 E-value=5.2e-07 Score=82.79 Aligned_cols=186 Identities=20% Similarity=0.234 Sum_probs=115.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC---CcEEEEccchh-----hhhhhcc------------hHHHHHHHHHHHHh-CCC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQL-----VQMFIGD------------GAKLVRDAFQLAKE-KSP 259 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s~l-----~~~~~g~------------~~~~~~~~~~~a~~-~~~ 259 (418)
-+.++|+.|||||.++|++...++ ...+.++.+.+ ...++.+ .+..-+.+...... ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999998777663 22344544322 2222111 11122333444444 445
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC-CC---hhhhCCCCceeEEEcCC
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI-LD---PALMRSGRLDRKIELPH 335 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~-l~---~~l~r~~Rf~~~i~~~~ 335 (418)
.++++||++.+. ......+..+.+.-......-.+++|+-...-.. -. ..+.. |++..|.+++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCC
Confidence 899999999983 3344444444443222222223444433221110 11 22334 7876799999
Q ss_pred CCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 336 PSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 336 p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
.+.++-...++.++..-..+ ++.....+...+.| .|+-|.++|..|...|...+...|+...+.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 99998888998888754333 33446667777777 688999999999999999999999877654
No 249
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=2.1e-07 Score=88.46 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=82.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc--------chhhhhh-hcc----hHHHHHHHHHHHHh----CCC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG--------PQLVQMF-IGD----GAKLVRDAFQLAKE----KSP 259 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~--------s~l~~~~-~g~----~~~~~~~~~~~a~~----~~~ 259 (418)
+-++.+||+||+|+||+.+|.++|+.+-+.--.-.| +++..-. .|. .-..++.+...+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 346689999999999999999999987432100011 1110000 011 12234444444432 334
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCC
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPS 337 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~ 337 (418)
.|++||++|.+ +.+.++.|+..|++ ++.++++|..|+.++.+.|++++ |+ ..+.|+++.
T Consensus 97 kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~~ 155 (290)
T PRK05917 97 KIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPMEE 155 (290)
T ss_pred eEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccchh
Confidence 79999999999 66778888888875 45678889999999999999999 88 467777653
No 250
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.67 E-value=1.2e-07 Score=93.82 Aligned_cols=228 Identities=21% Similarity=0.220 Sum_probs=133.7
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchH
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 244 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~ 244 (418)
.+|.|.+++++.|.-.+.-..... .-..+.++..-+++|.|.||+.||-|.+++.+-..+..+.-.... .-+|-++
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~-~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTA 417 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS-PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTA 417 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC-CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccch
Confidence 458899999998877664332220 000111233345999999999999999999987755554433210 0111111
Q ss_pred HHHHH-----------HHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh--------hcCCCCCCCe
Q 039866 245 KLVRD-----------AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ--------LDGFSSDDRI 305 (418)
Q Consensus 245 ~~~~~-----------~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~--------~~~~~~~~~v 305 (418)
...+. .+-.| ..+|.+|||+|++... -...+.+++++ +-...-+.++
T Consensus 418 AVmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNAR~ 483 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNART 483 (721)
T ss_pred hhhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhhhH
Confidence 11110 11111 2359999999999422 12233344432 2222334577
Q ss_pred EEEEEeCCCC-------------CCChhhhCCCCceeEEE-cCCCCHHHHHHHHHHHhh------cCCCC-CCCCH----
Q 039866 306 KVIAATNRAD-------------ILDPALMRSGRLDRKIE-LPHPSEEARARILQIHSR------KMTVH-PDVNF---- 360 (418)
Q Consensus 306 ivI~ttn~~~-------------~l~~~l~r~~Rf~~~i~-~~~p~~~~r~~il~~~~~------~~~~~-~~~~~---- 360 (418)
-|++++|+.. .|+++|++ |||..+- ...|+.+.=..+.++..- .-+.. ..++.
T Consensus 484 sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR 561 (721)
T KOG0482|consen 484 SILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMR 561 (721)
T ss_pred HhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHH
Confidence 7899999743 58899999 9997443 346665544443333221 00000 00111
Q ss_pred --------------HHHHHH-----------------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 361 --------------EELARS-----------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 361 --------------~~la~~-----------------~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
..++.+ ..-.|++-|-.+++.+...|..|-+..|..+|+.+|++-++-+
T Consensus 562 ~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 562 RYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 111110 0123678899999999999999999999999999999999987
Q ss_pred hhh
Q 039866 410 KKA 412 (418)
Q Consensus 410 ~~~ 412 (418)
+.+
T Consensus 642 K~s 644 (721)
T KOG0482|consen 642 KDS 644 (721)
T ss_pred hcc
Confidence 764
No 251
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=1.2e-07 Score=79.77 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=48.2
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh--------CCcEEEEccchhhh------hh--------hc--chHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT--------NATFLKLAGPQLVQ------MF--------IG--DGAKLVRDAFQLA 254 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l--------~~~~~~i~~s~l~~------~~--------~g--~~~~~~~~~~~~a 254 (418)
.+.++++||||+|||++++.+++.+ ..+++.++++.... .. .+ ........+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999987 67788888754431 10 01 1233334455555
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 5555569999999997
No 252
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.63 E-value=3.4e-07 Score=85.66 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=83.0
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-----CcEEEE-----cc--
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKL-----AG-- 232 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i-----~~-- 232 (418)
+.+.||.-+++.|...+...+.++. -+.|-.+=|+|+|||||.++++.||+.+- .+++.. ++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 3578999999999888876665531 02233355889999999999999999761 222111 11
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC--CCCCeEEEEE
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--SDDRIKVIAA 310 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~vivI~t 310 (418)
...++.|.. .....+...++.+..++.++||+|+| ++.+...+--+|+...... ...+.++|+-
T Consensus 156 ~~~ie~Yk~---eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~frkaIFIfL 221 (344)
T KOG2170|consen 156 ASKIEDYKE---ELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFL 221 (344)
T ss_pred hHHHHHHHH---HHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccccceEEEEE
Confidence 111122221 22234445556677789999999999 6777788877877432221 2246778888
Q ss_pred eCCC
Q 039866 311 TNRA 314 (418)
Q Consensus 311 tn~~ 314 (418)
+|.-
T Consensus 222 SN~g 225 (344)
T KOG2170|consen 222 SNAG 225 (344)
T ss_pred cCCc
Confidence 8754
No 253
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.8e-06 Score=80.54 Aligned_cols=121 Identities=11% Similarity=0.055 Sum_probs=80.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch--------------hhhhhh-c--chHHHHHHHHHHHH----
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ--------------LVQMFI-G--DGAKLVRDAFQLAK---- 255 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~--------------l~~~~~-g--~~~~~~~~~~~~a~---- 255 (418)
.+|+.+||+||+|+||..+|.++|+.+-+.--.-.|.. +.--+. + -.-..++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 47888999999999999999999997632110001111 100000 0 01222334433322
Q ss_pred -hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcC
Q 039866 256 -EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELP 334 (418)
Q Consensus 256 -~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~ 334 (418)
...+.|++|+++|.+ +.+..+.|+-+|++ ++.++++|.+|+.++.+.|++++ |+. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 234579999999999 56667777777764 55788899999999999999999 874 56777
Q ss_pred CC
Q 039866 335 HP 336 (418)
Q Consensus 335 ~p 336 (418)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 76
No 254
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.57 E-value=1.2e-07 Score=90.21 Aligned_cols=139 Identities=18% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCC-c--EEEEccchhhhhhhcchHHHHHHHHHHH-----------HhCCCeEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNA-T--FLKLAGPQLVQMFIGDGAKLVRDAFQLA-----------KEKSPCIIF 263 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~-~--~~~i~~s~l~~~~~g~~~~~~~~~~~~a-----------~~~~~~vl~ 263 (418)
..+++||+||+|||||.+++.+-+.+.. . ...++++.... ...+..+.+.. ..+...|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 3457999999999999999998876632 2 23444443211 11121111111 011236999
Q ss_pred EcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-------CCCeEEEEEeCCCC---CCChhhhCCCCceeEEEc
Q 039866 264 IDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-------DDRIKVIAATNRAD---ILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 264 iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-------~~~vivI~ttn~~~---~l~~~l~r~~Rf~~~i~~ 333 (418)
|||+..-.+...+ .....+.|.|+++..-..+. -.++.+|+|.++.. .+++.|+| .| .++.+
T Consensus 106 iDDlN~p~~d~yg-----tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYG-----TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS-------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred ecccCCCCCCCCC-----CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 9999876544322 22344666777765322221 12677899988653 47888887 67 58999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 039866 334 PHPSEEARARILQIHSR 350 (418)
Q Consensus 334 ~~p~~~~r~~il~~~~~ 350 (418)
+.|+.+....|+...+.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999988888776654
No 255
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.8e-06 Score=81.09 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=90.9
Q ss_pred CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEE--EEcc--------------
Q 039866 169 GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL--KLAG-------------- 232 (418)
Q Consensus 169 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~--~i~~-------------- 232 (418)
++..+++.+...+... +.++.+||+|| +||+++|+.+|..+-+.-- .-.|
T Consensus 6 ~q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3556666666665322 45668999996 6899999999997632110 0011
Q ss_pred chhhhhh-hcc--hHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCe
Q 039866 233 PQLVQMF-IGD--GAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 305 (418)
Q Consensus 233 s~l~~~~-~g~--~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v 305 (418)
+++..-. .|. .-..++.+...+.. ....|++||++|.+ +....+.|+..|++ ++.++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t 135 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEI 135 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCe
Confidence 1110000 011 12344555444432 33479999999999 55666777766664 44578
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ 346 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~ 346 (418)
++|.+|+.++.+.|++++ |+ ..+.|+. +.+...+++.
T Consensus 136 ~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 889999989999999999 88 5788876 5555555553
No 256
>PF05729 NACHT: NACHT domain
Probab=98.55 E-value=1.2e-06 Score=76.36 Aligned_cols=140 Identities=17% Similarity=0.245 Sum_probs=76.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC---------CcEEEEccchhhhh--------h----hcchHHHHHH-HHHHHHhCC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN---------ATFLKLAGPQLVQM--------F----IGDGAKLVRD-AFQLAKEKS 258 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~---------~~~~~i~~s~l~~~--------~----~g~~~~~~~~-~~~~a~~~~ 258 (418)
-++|+|+||+|||++++.++..+. ..++.+.+...... . .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998761 11223333322211 0 0111111111 223344556
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC--CChhhhCCCCceeEEEcCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI--LDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~--l~~~l~r~~Rf~~~i~~~~p 336 (418)
+.+|+||.+|.+...... .........+.+++.. ....++.+|.|+++... +...+.. . ..+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCC
Confidence 679999999999643211 0011222334444443 12234455555553222 2222221 1 47899999
Q ss_pred CHHHHHHHHHHHhhc
Q 039866 337 SEEARARILQIHSRK 351 (418)
Q Consensus 337 ~~~~r~~il~~~~~~ 351 (418)
+.++..++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999888753
No 257
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.52 E-value=1.2e-06 Score=96.50 Aligned_cols=135 Identities=19% Similarity=0.263 Sum_probs=99.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh------hhhhhcchHHH----HHHHHHHHHhCCCeEEEEcCCC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL------VQMFIGDGAKL----VRDAFQLAKEKSPCIIFIDEID 268 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l------~~~~~g~~~~~----~~~~~~~a~~~~~~vl~iDEid 268 (418)
.-++||.||+.+|||+....+|+..|..|++||-.+. ++.|+.+..+. -..+.+..+++ + -|++||+.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-y-WIVLDELN 965 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-Y-WIVLDELN 965 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-c-EEEeeccc
Confidence 3469999999999999999999999999999997543 33343222221 12244444443 3 78899998
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhhcC---------CCCCCCeEEEEEeCCCC------CCChhhhCCCCceeEEEc
Q 039866 269 AIGTKRFDSEVSGDREVQRTMLELLNQLDG---------FSSDDRIKVIAATNRAD------ILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~---------~~~~~~vivI~ttn~~~------~l~~~l~r~~Rf~~~i~~ 333 (418)
.. ..++...|.++|+.-.. ..+..++.++||-|+|. .+..++++ || ..++|
T Consensus 966 LA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hF 1031 (4600)
T COG5271 966 LA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHF 1031 (4600)
T ss_pred cC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhc
Confidence 76 55789999999975322 12345788899999885 57899998 99 57788
Q ss_pred CCCCHHHHHHHHHHHh
Q 039866 334 PHPSEEARARILQIHS 349 (418)
Q Consensus 334 ~~p~~~~r~~il~~~~ 349 (418)
..-+.++...|+...+
T Consensus 1032 ddipedEle~ILh~rc 1047 (4600)
T COG5271 1032 DDIPEDELEEILHGRC 1047 (4600)
T ss_pred ccCcHHHHHHHHhccC
Confidence 8888888888887655
No 258
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.47 E-value=1.4e-06 Score=81.16 Aligned_cols=134 Identities=24% Similarity=0.375 Sum_probs=80.6
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHH------HhCCcEEEEccchhhhhhh-cchHHHHHHHHHH--------HHhCCCe
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAA------QTNATFLKLAGPQLVQMFI-GDGAKLVRDAFQL--------AKEKSPC 260 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~------~l~~~~~~i~~s~l~~~~~-g~~~~~~~~~~~~--------a~~~~~~ 260 (418)
++....+||.||+|.||+.+|+.+.. ++..+|+.+||..+..... ...-+.++..|.. .+....+
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 34556799999999999999999875 4578999999976643210 0011122222222 2233457
Q ss_pred EEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC--C----CCCeEEEEEeCC-------CCCCChhhhCCCCc
Q 039866 261 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--S----DDRIKVIAATNR-------ADILDPALMRSGRL 327 (418)
Q Consensus 261 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~----~~~vivI~ttn~-------~~~l~~~l~r~~Rf 327 (418)
+||+|||..++. +-|..|+..+++-.-++ + .+.+.+|+-|.+ ...+...+.- |+
T Consensus 285 mlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a--ri 351 (531)
T COG4650 285 MLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA--RI 351 (531)
T ss_pred eEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH--hh
Confidence 999999999953 34566666666532211 1 234556665543 1234455554 55
Q ss_pred eeEEEcCCCCHHHHHH
Q 039866 328 DRKIELPHPSEEARAR 343 (418)
Q Consensus 328 ~~~i~~~~p~~~~r~~ 343 (418)
. ...|..|...+|.+
T Consensus 352 n-lwtf~lpgl~qr~e 366 (531)
T COG4650 352 N-LWTFTLPGLRQRQE 366 (531)
T ss_pred h-eeeeeccccccCcc
Confidence 3 56677777766654
No 259
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.46 E-value=5.9e-07 Score=88.68 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=61.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCC-cEEEEccchhhhhh-------hcchHHHHHHHHHHHHhCCCeEEEEcCC
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNA-TFLKLAGPQLVQMF-------IGDGAKLVRDAFQLAKEKSPCIIFIDEI 267 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~-~~~~i~~s~l~~~~-------~g~~~~~~~~~~~~a~~~~~~vl~iDEi 267 (418)
..+|+|++||||+|+|||+|+-.+.+.+.. .-.++.-.+++... .|.... +..+...... ...+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~-l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDP-LPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCcc-HHHHHHHHHh-cCCEEEEeee
Confidence 457899999999999999999999998743 22333333333321 111111 2222222222 2249999999
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 268 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 268 d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+.- +..-...|..++..+- ..++++|+|||.+
T Consensus 137 ~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 764 2222334445555442 2467899999964
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=6.5e-06 Score=79.19 Aligned_cols=126 Identities=10% Similarity=0.074 Sum_probs=85.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCc-------------EEEEccchhhhhhhcchHHHHHHHHHHHHh-----CCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNAT-------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE-----KSP 259 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~-------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~-----~~~ 259 (418)
-++.+||+|+.|+||+.+|+.+++.+-|. +..++.. +..+ .-..++.+.+.+.- +.+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCc
Confidence 34568999999999999999999987221 2222200 0000 11234444443321 355
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHH
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE 339 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~ 339 (418)
.|++||++|.+ ....++.|+..|++ ++..+++|.+|+.++.+-|++++ |+ .++.|++|+.+
T Consensus 92 KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 92 KILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred eEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 79999999998 44556666666664 34567777777778899999998 87 57999999998
Q ss_pred HHHHHHHH
Q 039866 340 ARARILQI 347 (418)
Q Consensus 340 ~r~~il~~ 347 (418)
+....+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 87776654
No 261
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=6.1e-06 Score=83.06 Aligned_cols=212 Identities=13% Similarity=0.181 Sum_probs=109.7
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccc--
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP-- 233 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s-- 233 (418)
+++..+...+++.-+..-+.++..++... . .+ ..+ -+.+-+||+||+||||||+++.++.++|..+..-.-+
T Consensus 73 ~eKy~P~t~eeLAVHkkKI~eVk~WL~~~-~---~~-~~~-l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~ 146 (634)
T KOG1970|consen 73 VEKYKPRTLEELAVHKKKISEVKQWLKQV-A---EF-TPK-LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN 146 (634)
T ss_pred HHhcCcccHHHHhhhHHhHHHHHHHHHHH-H---Hh-ccC-CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc
Confidence 44445566777777777777777777511 0 01 001 1234588999999999999999999998777665521
Q ss_pred -----------hhhhhhhcchHHHHHHHHHHHH------------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 234 -----------QLVQMFIGDGAKLVRDAFQLAK------------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 234 -----------~l~~~~~g~~~~~~~~~~~~a~------------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
.+....+...-.......+.+. ...+.+|++||+-..+... +.+.++.++
T Consensus 147 ~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~~~~f~evL 219 (634)
T KOG1970|consen 147 LKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------DSETFREVL 219 (634)
T ss_pred ccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------hHHHHHHHH
Confidence 1111011100000111112221 1235699999997764321 222222222
Q ss_pred HHHHhhcCCCCCCCeEEEEEe-CCCCCCC------hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCC----CC
Q 039866 291 ELLNQLDGFSSDDRIKVIAAT-NRADILD------PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD----VN 359 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~tt-n~~~~l~------~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~ 359 (418)
+++.. . +...+++|.|- +.++.-+ ..+.-..|+. .|.|.+-...-..+.++..++....... -+
T Consensus 220 ~~y~s---~-g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 220 RLYVS---I-GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHh---c-CCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 23222 1 11234333332 2222222 2222223553 7889888888888888777764433211 11
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 360 FEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 360 ~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
...+-..+.| +++||+..++...+.+
T Consensus 295 ~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 2223333333 4568988888766665
No 262
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.42 E-value=1.4e-06 Score=75.51 Aligned_cols=110 Identities=21% Similarity=0.306 Sum_probs=63.4
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh----------------------hcc--hHHHHHHHHHHH
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF----------------------IGD--GAKLVRDAFQLA 254 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~----------------------~g~--~~~~~~~~~~~a 254 (418)
++|+||||+|||+++..++... +.+++.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5677777664332210 000 111112234555
Q ss_pred HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 255 KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
....|.+++|||+..+................+.+..++..... .++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCC
Confidence 66778999999999875432100001122334455555554432 3555666665443
No 263
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.37 E-value=1.2e-06 Score=88.97 Aligned_cols=233 Identities=18% Similarity=0.184 Sum_probs=122.2
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHH
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAK 245 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~ 245 (418)
.|.|++.++..+.-++.-...+... .+-.++..-++||+|.||||||-+.|.+++-..+.++.-.-..-. +|-+..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~-~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa---vGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPG-GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA---VGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCC-CCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc---cceeEE
Confidence 4677887777776655332211000 000112223599999999999999999999776655543321100 000000
Q ss_pred --------HH---HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 246 --------LV---RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 246 --------~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
.+ ..++-.| ..+|.+|||+|++...... +-|....++-..+-..+-...-+.++.||+|+|+.
T Consensus 526 v~KdPvtrEWTLEaGALVLA---DkGvClIDEFDKMndqDRt---SIHEAMEQQSISISKAGIVtsLqArctvIAAanPi 599 (854)
T KOG0477|consen 526 VRKDPVTREWTLEAGALVLA---DKGVCLIDEFDKMNDQDRT---SIHEAMEQQSISISKAGIVTSLQARCTVIAAANPI 599 (854)
T ss_pred EeeCCccceeeeccCeEEEc---cCceEEeehhhhhcccccc---hHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCC
Confidence 00 0011111 2359999999999532110 00111111111111100001113577899999973
Q ss_pred C-------------CCChhhhCCCCceeEEEcC---CCCHHHHH--HHHHHHhhcCCC----------------------
Q 039866 315 D-------------ILDPALMRSGRLDRKIELP---HPSEEARA--RILQIHSRKMTV---------------------- 354 (418)
Q Consensus 315 ~-------------~l~~~l~r~~Rf~~~i~~~---~p~~~~r~--~il~~~~~~~~~---------------------- 354 (418)
. .+-..+++ ||+..+.+. .|-.+++. -++..+.+..+-
T Consensus 600 gGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~ 677 (854)
T KOG0477|consen 600 GGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQE 677 (854)
T ss_pred CCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHH
Confidence 1 34566778 999766554 23233332 233333321111
Q ss_pred ----------------CCCCCHHHHHHH---------cCC---CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 355 ----------------HPDVNFEELARS---------TDD---FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 355 ----------------~~~~~~~~la~~---------~~g---~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
-...+.+.++.. ..| .+.+-|..+++.+...|..+-+..|+.+|+..|++-+
T Consensus 678 lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 678 LLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVM 757 (854)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHH
Confidence 112223333321 112 2457888898888888888888999999999999888
Q ss_pred HHhh
Q 039866 407 QAKK 410 (418)
Q Consensus 407 ~~~~ 410 (418)
..++
T Consensus 758 ldSf 761 (854)
T KOG0477|consen 758 LDSF 761 (854)
T ss_pred HHHH
Confidence 7654
No 264
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.37 E-value=7.8e-06 Score=92.99 Aligned_cols=179 Identities=21% Similarity=0.325 Sum_probs=99.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE---EEEccc--
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF---LKLAGP-- 233 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~---~~i~~s-- 233 (418)
.+...+++++|.+..++.+...+.. .....+-+-|+||+|+||||+|+++++.+...| +.++..
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 3556788999999999999887632 123445689999999999999999988763322 111110
Q ss_pred ----hhhhh-----h---hcchHHHHH-------------HHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH
Q 039866 234 ----QLVQM-----F---IGDGAKLVR-------------DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 288 (418)
Q Consensus 234 ----~l~~~-----~---~g~~~~~~~-------------~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 288 (418)
..... + .......+. ......-...+.+|+||+++.. .....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~ 313 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDA 313 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHH
Confidence 00000 0 000000000 0111112345679999998753 22222
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC----HHHHH
Q 039866 289 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN----FEELA 364 (418)
Q Consensus 289 l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la 364 (418)
+. .....+ ..+ ..||.||... .+.+....+.++.++.|+.++..+++..++-+.... ..+ ...++
T Consensus 314 L~---~~~~~~-~~G-srIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv 382 (1153)
T PLN03210 314 LA---GQTQWF-GSG-SRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVA 382 (1153)
T ss_pred HH---hhCccC-CCC-cEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHH
Confidence 22 212222 222 3456666643 333322466789999999999999988776433222 112 23455
Q ss_pred HHcCCCcH
Q 039866 365 RSTDDFNG 372 (418)
Q Consensus 365 ~~~~g~s~ 372 (418)
.++.|..-
T Consensus 383 ~~c~GLPL 390 (1153)
T PLN03210 383 LRAGNLPL 390 (1153)
T ss_pred HHhCCCcH
Confidence 66766543
No 265
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.31 E-value=6.3e-06 Score=78.42 Aligned_cols=163 Identities=19% Similarity=0.286 Sum_probs=102.8
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHH---HhCCcEEEEccchhhhh--
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAA---QTNATFLKLAGPQLVQM-- 238 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~---~l~~~~~~i~~s~l~~~-- 238 (418)
.-.+.|..+.-+.+.+.+.....+ ...+++++.||.|+|||++...... +.+..|+.+........
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk 93 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDK 93 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhH
Confidence 445678888888887776543332 3567899999999999998766533 45666666544222111
Q ss_pred -------------------hhcchHHHHHHHHHHHHhC-----CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 039866 239 -------------------FIGDGAKLVRDAFQLAKEK-----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 294 (418)
Q Consensus 239 -------------------~~g~~~~~~~~~~~~a~~~-----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 294 (418)
..|.....+..+....... .+.|.++||||.+++ +.-|..++.+++
T Consensus 94 ~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfD 163 (408)
T KOG2228|consen 94 IALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHH
Confidence 1233333334444443322 234555689999863 345667788887
Q ss_pred hhcCCCCCCCeEEEEEeCCCC---CCChhhhCCCCceeE-EEcC-CCCHHHHHHHHHHHh
Q 039866 295 QLDGFSSDDRIKVIAATNRAD---ILDPALMRSGRLDRK-IELP-HPSEEARARILQIHS 349 (418)
Q Consensus 295 ~~~~~~~~~~vivI~ttn~~~---~l~~~l~r~~Rf~~~-i~~~-~p~~~~r~~il~~~~ 349 (418)
--. ..+.++.||+.|.+-+ .+.....+ ||... |.++ ..+..+...+++..+
T Consensus 164 isq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 544 2345788898888766 44577777 99874 5554 446778777777666
No 266
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.31 E-value=1.8e-06 Score=78.88 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=52.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-hhhhc----------------------chHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-QMFIG----------------------DGAKLVR 248 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-~~~~g----------------------~~~~~~~ 248 (418)
|+++..-++++||||+|||+++..++... +..+++++..++. ..+.. +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 66677779999999999999999998754 5678888875421 11000 0011133
Q ss_pred HHHHHHHhCCCeEEEEcCCCcccc
Q 039866 249 DAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 249 ~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445555789999999998753
No 267
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.30 E-value=3.4e-06 Score=93.18 Aligned_cols=137 Identities=21% Similarity=0.323 Sum_probs=95.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh--hhc-----c--hHHHHHH--HHHHHHhCCCeEEEEcC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIG-----D--GAKLVRD--AFQLAKEKSPCIIFIDE 266 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~--~~g-----~--~~~~~~~--~~~~a~~~~~~vl~iDE 266 (418)
-.+++||-|.||+|||++..++|+..|..+++||.|+-..- .+| + ++-.++. ++...+ ...-+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr--~G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR--DGGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh--cCCEEEeeh
Confidence 44579999999999999999999999999999998753221 122 2 1111221 222233 235889999
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHhhc---------CCCCCCCeEEEEEeCCCC------CCChhhhCCCCceeEE
Q 039866 267 IDAIGTKRFDSEVSGDREVQRTMLELLNQLD---------GFSSDDRIKVIAATNRAD------ILDPALMRSGRLDRKI 331 (418)
Q Consensus 267 id~l~~~~~~~~~~~~~~~~~~l~~ll~~~~---------~~~~~~~vivI~ttn~~~------~l~~~l~r~~Rf~~~i 331 (418)
+... ...+..-|...|+... .+....++.|+||-|+.+ .++..++. ||. ++
T Consensus 1620 iNLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1620 INLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 9865 4456677777776421 233456888999998754 68999999 995 77
Q ss_pred EcCCCCHHHHHHHHHHHhh
Q 039866 332 ELPHPSEEARARILQIHSR 350 (418)
Q Consensus 332 ~~~~p~~~~r~~il~~~~~ 350 (418)
.+..++.++...|......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 8888888887777765544
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.27 E-value=4.1e-06 Score=69.26 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=41.3
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCC--ceeecCCCCcHHHHHHHHHHHh
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKG--VLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~--vLl~Gp~GtGKT~lakala~~l 223 (418)
.+|.||.-+.+.+..++...+..+ .|.+. +-|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 468899999999999987665542 34444 5599999999999999999985
No 269
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.25 E-value=1.1e-05 Score=80.40 Aligned_cols=228 Identities=20% Similarity=0.227 Sum_probs=125.0
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch----hhhhhhc
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ----LVQMFIG 241 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~----l~~~~~g 241 (418)
.|.|..++++.+.-.+.-.-.. -+-....++..-+|||.|.|||.||-|.|.+-.-....++.-.... +.....-
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK-~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK-RLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc-cCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 4778888888876654221110 0000011122336999999999999999988765443333222110 0000000
Q ss_pred chHHH---H-HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHH--------hhcCCCCCCCeEEEE
Q 039866 242 DGAKL---V-RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDDRIKVIA 309 (418)
Q Consensus 242 ~~~~~---~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~--------~~~~~~~~~~vivI~ 309 (418)
+.... + ....-. ...+|++|||+|++-.. -.-.+.+.++ .+-...-+.++-|++
T Consensus 411 D~~tReFylEGGAMVL---ADgGVvCIDEFDKMre~-----------DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLA 476 (729)
T KOG0481|consen 411 DPSTREFYLEGGAMVL---ADGGVVCIDEFDKMRED-----------DRVAIHEAMEQQTISIAKAGITTTLNSRTSVLA 476 (729)
T ss_pred cCCcceEEEecceEEE---ecCCEEEeehhhccCch-----------hhhHHHHHHHhhhHHHhhhcceeeecchhhhhh
Confidence 00000 0 000011 12469999999999321 1122222222 222222355777899
Q ss_pred EeCCC-----------C--CCChhhhCCCCceeEEEcCCCCHHHHH-----HHHHHHhhcCCCC--C------CCCHHH-
Q 039866 310 ATNRA-----------D--ILDPALMRSGRLDRKIELPHPSEEARA-----RILQIHSRKMTVH--P------DVNFEE- 362 (418)
Q Consensus 310 ttn~~-----------~--~l~~~l~r~~Rf~~~i~~~~p~~~~r~-----~il~~~~~~~~~~--~------~~~~~~- 362 (418)
++|++ + .+-|.+++ |||.++-+..--.+++- .++..|..+.+.. . .+.+..
T Consensus 477 AANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~ 554 (729)
T KOG0481|consen 477 AANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKL 554 (729)
T ss_pred hcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHH
Confidence 99974 2 35599999 99998877654444332 2333333211111 0 111111
Q ss_pred ----------------------HHHH-------------------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 039866 363 ----------------------LARS-------------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 401 (418)
Q Consensus 363 ----------------------la~~-------------------~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~ 401 (418)
|... +-..+.++|+++++-+-..|.-+-.+..|..|+.+
T Consensus 555 KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~E 634 (729)
T KOG0481|consen 555 KRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEE 634 (729)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHH
Confidence 1110 01245689999999999999888899999999999
Q ss_pred HHHHHHHhh
Q 039866 402 GIIQVQAKK 410 (418)
Q Consensus 402 Al~~~~~~~ 410 (418)
|++-.+.+.
T Consensus 635 A~RLF~vST 643 (729)
T KOG0481|consen 635 ALRLFQVST 643 (729)
T ss_pred HHHHHhHhh
Confidence 999887654
No 270
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.24 E-value=1.6e-06 Score=70.54 Aligned_cols=23 Identities=39% Similarity=0.808 Sum_probs=20.8
Q ss_pred ceeecCCCCcHHHHHHHHHHHhC
Q 039866 202 VLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~ 224 (418)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998763
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=1.7e-05 Score=67.97 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+..++++||||+|||+++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4469999999999999999999876
No 272
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.21 E-value=1.4e-05 Score=76.49 Aligned_cols=173 Identities=21% Similarity=0.271 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH--hCCc---EEEEccch------hhhhh
Q 039866 171 EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ--TNAT---FLKLAGPQ------LVQMF 239 (418)
Q Consensus 171 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~--l~~~---~~~i~~s~------l~~~~ 239 (418)
+..+++|.+.+... . ...+.+.|+|++|+|||++|+.+++. .... ++.++.+. +....
T Consensus 2 e~~~~~l~~~L~~~----------~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN----------S-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT----------T-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC----------C-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45566666665321 1 34556999999999999999999987 3322 23333321 11110
Q ss_pred ---hc----------chHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 240 ---IG----------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 240 ---~g----------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
.+ ........+.+.. ...+++|+||+++.. .....+...+.. ...+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~-----~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDE-------------EDLEELREPLPS-----FSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SH-------------HHH-------HC-----HHSS-E
T ss_pred cccccccccccccccccccccccchhhh-ccccceeeeeeeccc-------------cccccccccccc-----cccccc
Confidence 11 1122333343433 344899999999764 111112222211 112456
Q ss_pred EEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCC----CCCCCCHHHHHHHcCCCcHHHHHHH
Q 039866 307 VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAV 378 (418)
Q Consensus 307 vI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~g~s~~di~~l 378 (418)
||.||.... +..... .-...+.++.++.++-.+++........ .........++..+.|. |-.|..+
T Consensus 132 ilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 132 ILVTTRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp EEEEESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccc-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 777887533 211121 1146899999999999999998875433 11122356788888775 4444444
No 273
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.20 E-value=1.3e-05 Score=71.70 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=58.5
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh------hcc-----------------------hH-----
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD-----------------------GA----- 244 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~------~g~-----------------------~~----- 244 (418)
++++||||||||+++..++... +.++++++..+-...+ .|- ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887754 6677777653221110 000 00
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 245 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 245 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
.....+...+....|.+++||++..+... ........+..++..+... ++.+|++++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~~----g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKRF----GVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHHC----CCEEEEEeccc
Confidence 01233444555667899999999887431 0123334445555554322 33455555543
No 274
>PF14516 AAA_35: AAA-like domain
Probab=98.20 E-value=0.00022 Score=70.00 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh-------h-----------hcc-------------
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-------F-----------IGD------------- 242 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~-------~-----------~g~------------- 242 (418)
.++..+.+.||..+|||++...+.+.+ +...+.+++..+-.. + .+-
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 356679999999999999999998766 667777877543211 0 000
Q ss_pred hHHHHHHHHHHH---HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC----CCCCCCeEEEEEeCC-C
Q 039866 243 GAKLVRDAFQLA---KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIKVIAATNR-A 314 (418)
Q Consensus 243 ~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~----~~~~~~vivI~ttn~-~ 314 (418)
........|+.. ....|-||+|||||.+... +.+..-++.+|..... .....++.+|++... .
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 011112223321 2246789999999999642 2232334444433211 111223444433322 2
Q ss_pred CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHH
Q 039866 315 DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 315 ~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 380 (418)
......-.+|-.+...+.++..+.++...+++.+-.. .... .++.+-..+.|. |.=++.+|.
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGh-P~Lv~~~~~ 241 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGH-PYLVQKACY 241 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCC-HHHHHHHHH
Confidence 2221111233345557888999999998888776433 2222 277777777774 434444443
No 275
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=9.7e-06 Score=77.90 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=61.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcE-EEEccchhhhh-------hhcchHHHHHHHHHHHHhCCCeEEEEcCCC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATF-LKLAGPQLVQM-------FIGDGAKLVRDAFQLAKEKSPCIIFIDEID 268 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~-~~i~~s~l~~~-------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid 268 (418)
.+++|+.||||-|.|||+|.-.+...+..+- .++.-..++.. ..|+....-...-+.+... .||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~--~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAET--RVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcC--CEEEeeeee
Confidence 5789999999999999999999999874322 33332333322 2243322111222233333 499999997
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 269 AIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
-= +..-.-+|..|++.+-. .+|.+++|||.+
T Consensus 141 Vt-----------DI~DAMiL~rL~~~Lf~----~GV~lvaTSN~~ 171 (367)
T COG1485 141 VT-----------DIADAMILGRLLEALFA----RGVVLVATSNTA 171 (367)
T ss_pred ec-----------ChHHHHHHHHHHHHHHH----CCcEEEEeCCCC
Confidence 53 22223345566655432 368899999963
No 276
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2e-05 Score=84.72 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=114.2
Q ss_pred CccccCc-HHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEEcc
Q 039866 164 YNDIGGL-EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAG 232 (418)
Q Consensus 164 ~~~i~G~-~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i~~ 232 (418)
.+.++|. ++.++.+.+.+.. +..++-+|.|.||+|||.++.-+++.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5677787 8888888886632 234789999999999999999999965 355677777
Q ss_pred chhhh--hhhcchHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 039866 233 PQLVQ--MFIGDGAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 309 (418)
Q Consensus 233 s~l~~--~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ 309 (418)
..+.. ++.|+.+..++.+...+. .....||||||++-+...... .+..+..+.|..++.. +.+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L~r-------g~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLLAR-------GGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHHhc-------CCeEEEe
Confidence 65443 466888889999988887 446679999999999765432 1122334444444432 3478898
Q ss_pred EeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 310 ATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 310 ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
||.... .-+|++-+ ||+ .+.++.|+.+....|+......
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 776322 45799998 996 6678888887766666655444
No 277
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.15 E-value=1.2e-05 Score=77.95 Aligned_cols=118 Identities=23% Similarity=0.302 Sum_probs=68.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh------------h----hcchHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM------------F----IGDGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~------------~----~g~~~~~~~~~~~~a~ 255 (418)
|+++.+.++|+||||||||+||-.++... +.++++++..+.... + ....+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777779999999999999999876654 677888876443221 0 0112223333344456
Q ss_pred hCCCeEEEEcCCCcccccCC-CCCC-CCCHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 256 EKSPCIIFIDEIDAIGTKRF-DSEV-SGDREVQ-RTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~-~~~~-~~~~~~~-~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
...+.+|+||-+..+.+... ++.. ..+...+ +.+.+.|..+...-...++.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 67789999999999876421 1110 0111122 22334444443333345666776654
No 278
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.14 E-value=1.1e-05 Score=78.19 Aligned_cols=118 Identities=22% Similarity=0.273 Sum_probs=68.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh------------h----hcchHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM------------F----IGDGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~------------~----~g~~~~~~~~~~~~a~ 255 (418)
|+++.+.+.++||||||||+||-.++... +..+++++..+-... + ....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56677779999999999999999987644 677888876432111 0 0112222333334456
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCC--CHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSG--DREVQ-RTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~--~~~~~-~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
...+.+|+||-+-.+.+...-....+ +...+ +.+.+.|..+...-...++.+|+|..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67789999999999876321111111 11112 33344444443333345666666654
No 279
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.13 E-value=2.8e-05 Score=77.22 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
...++++.||+|||||+++.+++... | ..+..+.++.... . ..... -..+.+|+|||+..+.-.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKFA 275 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcCC
Confidence 45689999999999999999988762 3 2223333332211 1 11111 234569999999986432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh
Q 039866 274 RFDSEVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~ 295 (418)
+ ..+....|...+..
T Consensus 276 ~-------~~~~v~imK~yMes 290 (449)
T TIGR02688 276 K-------PKELIGILKNYMES 290 (449)
T ss_pred c-------hHHHHHHHHHHHHh
Confidence 2 33455666655543
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.11 E-value=1.7e-05 Score=78.67 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=55.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh------hcc--------hHHHHHHHHHHHHhC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD--------GAKLVRDAFQLAKEK 257 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~------~g~--------~~~~~~~~~~~a~~~ 257 (418)
|+.+..-++|+||||+|||+++..+|... +.++++++..+-.... +|. .+..+..+.+.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56677779999999999999999998765 4577777764332211 110 112234566666777
Q ss_pred CCeEEEEcCCCccccc
Q 039866 258 SPCIIFIDEIDAIGTK 273 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~ 273 (418)
.|.+|+||.+..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999988643
No 281
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.11 E-value=1.7e-05 Score=80.81 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=56.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh------hcc--------hHHHHHHHHHHHHhC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD--------GAKLVRDAFQLAKEK 257 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~------~g~--------~~~~~~~~~~~a~~~ 257 (418)
|+.+...++|+||||+|||+++..++... +.++++++..+..... .|. .+..+..+...+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56677779999999999999999998865 5678888765433321 111 112234566667777
Q ss_pred CCeEEEEcCCCccccc
Q 039866 258 SPCIIFIDEIDAIGTK 273 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~ 273 (418)
.|.+|+||.+..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999988654
No 282
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.11 E-value=6.2e-06 Score=75.62 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh--hhh----h----hcchHHHHHHHHHHHH--hCCCeEEEEcC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL--VQM----F----IGDGAKLVRDAFQLAK--EKSPCIIFIDE 266 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l--~~~----~----~g~~~~~~~~~~~~a~--~~~~~vl~iDE 266 (418)
|..+||||+||+|||++|+.++.. ..++..+++.- ... . .......+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 456999999999999999999732 22333333210 000 0 0011112222222222 34578999999
Q ss_pred CCcccc------cCCC-C---CCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 039866 267 IDAIGT------KRFD-S---EVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 309 (418)
Q Consensus 267 id~l~~------~~~~-~---~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ 309 (418)
++.+.. .+.. + ...+-..+...+..++..+... ..++++++
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~--g~nII~tA 140 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKES--NKNIYATA 140 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 988754 1111 1 1222334555666666665442 23454444
No 283
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=4.1e-05 Score=74.14 Aligned_cols=160 Identities=22% Similarity=0.272 Sum_probs=92.1
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh------
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM------ 238 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~------ 238 (418)
..+.+.+.++..+...+... .-.-|..+.|||-+|||||.+.+++.+.++.+.+.++|-+...-
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~----------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN----------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cCccchHHHHHHHHHHhCCC----------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 35668888998888766211 01245568999999999999999999999999999998654321
Q ss_pred ----h-----hcchHH----H---HHHHHHH---HHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 039866 239 ----F-----IGDGAK----L---VRDAFQL---AKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 298 (418)
Q Consensus 239 ----~-----~g~~~~----~---~~~~~~~---a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 298 (418)
. -|.... . ...++.. +.+. ..-.|++|++|.+-.. +......+.++-..+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~--------~a~ll~~l~~L~el~-- 145 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM--------DAILLQCLFRLYELL-- 145 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc--------chHHHHHHHHHHHHh--
Confidence 1 111100 1 1112222 2222 2458889999998411 223333333333322
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhhCCCCce-eEEEcCCCCHHHHHHHHHHH
Q 039866 299 FSSDDRIKVIAATNRADILDPALMRSGRLD-RKIELPHPSEEARARILQIH 348 (418)
Q Consensus 299 ~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~-~~i~~~~p~~~~r~~il~~~ 348 (418)
....+.+|.+....... -+.+-|-++ .+++||.|+.++...|+..-
T Consensus 146 --~~~~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 --NEPTIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred --CCCceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22334444443322111 111112222 38899999999998888643
No 284
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.09 E-value=1.1e-05 Score=87.37 Aligned_cols=163 Identities=17% Similarity=0.292 Sum_probs=104.1
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh-----cch--HHHHHHHH---HH--HHhCCCeEEEEcCCCc
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI-----GDG--AKLVRDAF---QL--AKEKSPCIIFIDEIDA 269 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~-----g~~--~~~~~~~~---~~--a~~~~~~vl~iDEid~ 269 (418)
++++||||+|||+.+..+|.+++..++..|.+...+++. |.. ...+...+ .. .......||++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 599999999999999999999999999999876554421 110 11111112 00 1112224999999999
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHh
Q 039866 270 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHS 349 (418)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~ 349 (418)
+.. +++.....+.++... ....+|+++|.........+. |....+.|+.|+...+..-+...+
T Consensus 440 ~~~--------~dRg~v~~l~~l~~k-------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~ 502 (871)
T KOG1968|consen 440 MFG--------EDRGGVSKLSSLCKK-------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSIC 502 (871)
T ss_pred ccc--------hhhhhHHHHHHHHHh-------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhh
Confidence 864 133444555555552 234578888877766554444 544679999999998887766666
Q ss_pred hcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 039866 350 RKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 350 ~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 385 (418)
....+. .+..+..+...+ ++||++....-..+
T Consensus 503 ~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 503 KSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred cccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 543333 233455666544 66777776655554
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.08 E-value=4.3e-05 Score=70.99 Aligned_cols=110 Identities=14% Similarity=0.260 Sum_probs=62.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh------hc-----------------------c
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IG-----------------------D 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~------~g-----------------------~ 242 (418)
|+++...++++||||||||++|..++..+ +...+++...+-...+ .| .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45666779999999999999986665533 5566666543211110 00 0
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 243 --GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 243 --~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
....+..+...+....|.++++|++-.+... ..++...+.+.+++..+.. .+ ..++.|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~---~g-~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS---LN-KVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh---CC-CEEEEEeccc
Confidence 1223334445555557889999999876421 1122333555666665432 12 2456666643
No 286
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.07 E-value=1.4e-05 Score=73.95 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=32.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
|+++...++|+||||+|||++|..+|... +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666679999999999999999998754 6778888776
No 287
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.01 E-value=5e-06 Score=68.85 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=27.3
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
++|.|||||||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999887765554
No 288
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.01 E-value=2.5e-05 Score=72.79 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=50.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhh------c------------------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI------G------------------------ 241 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~------g------------------------ 241 (418)
|++++..++++||||||||+++.+++... +.++++++..+-...+. |
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 66777789999999999999999997653 66777776533221100 0
Q ss_pred ---chHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 242 ---DGAKLVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 242 ---~~~~~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
.....+..+...+....|.+++||++..+
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~ 132 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIF 132 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence 01223333444555567889999999865
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=7.2e-05 Score=75.19 Aligned_cols=124 Identities=21% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 276 (418)
.|+ .++++||.+||||++++.+...+...++.++..+.......- ...-..+..+.......+|||||+.+
T Consensus 36 ~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------ 106 (398)
T COG1373 36 RPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------ 106 (398)
T ss_pred CCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------
Confidence 344 799999999999999999988875555555544443322111 11111222222224469999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC--CCChhhhCCCCceeEEEcCCCCHHHHHH
Q 039866 277 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD--ILDPALMRSGRLDRKIELPHPSEEARAR 343 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~--~l~~~l~r~~Rf~~~i~~~~p~~~~r~~ 343 (418)
+++...+..+.+.... ++++.+++...- ...+.+ +||. ..+.+.|.+..+...
T Consensus 107 ------~~W~~~lk~l~d~~~~-----~v~itgsss~ll~~~~~~~L--~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ------PDWERALKYLYDRGNL-----DVLITGSSSSLLSKEISESL--AGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------hhHHHHHHHHHccccc-----eEEEECCchhhhccchhhhc--CCCc-eeEEECCCCHHHHHh
Confidence 3566667666664221 343333332221 223333 4685 678888889888865
No 290
>PHA00729 NTP-binding motif containing protein
Probab=97.99 E-value=8.7e-06 Score=74.60 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999875
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.97 E-value=1.5e-05 Score=81.76 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=47.5
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-CCcEEEEcc
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAG 232 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~ 232 (418)
-|+++.|+++++..|.+.+...... ++ .....++|.||||+|||+||++|++.+ ..+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4788999999999999887433221 11 233468899999999999999999987 346666544
No 292
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.93 E-value=8.7e-06 Score=72.39 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=39.4
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc---EEEEccchh
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGPQL 235 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~---~~~i~~s~l 235 (418)
++|.++.++.+...+. .... ..++.++|+||+|+|||++++.+...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5799999999999885 2221 356789999999999999999998876333 777777655
No 293
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.91 E-value=4e-05 Score=70.49 Aligned_cols=39 Identities=36% Similarity=0.498 Sum_probs=31.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
|++++..++++||||+|||++|..+|... +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56667779999999999999999998765 5677777653
No 294
>PRK09354 recA recombinase A; Provisional
Probab=97.88 E-value=6.6e-05 Score=73.39 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=52.9
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh------------h----hcchHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM------------F----IGDGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~------------~----~g~~~~~~~~~~~~a~ 255 (418)
|++..+.++|+||||||||+||-.++... +..+++++..+-... + ....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56667779999999999999999887543 777888876442211 0 0112222333334455
Q ss_pred hCCCeEEEEcCCCcccc
Q 039866 256 EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~ 272 (418)
...+.+|+||=+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 66789999999998875
No 295
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.87 E-value=0.0011 Score=64.72 Aligned_cols=79 Identities=23% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC---------------CCChhhh
Q 039866 258 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---------------ILDPALM 322 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~---------------~l~~~l~ 322 (418)
.+-|++|||+|++. ++....+++.+..+- ...++++|.+.++.. ......+
T Consensus 172 ~~iViiIDdLDR~~-----------~~~i~~~l~~ik~~~---~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRCS-----------PEEIVELLEAIKLLL---DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcCC-----------cHHHHHHHHHHHHhc---CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 45799999999993 333334444444433 336788888877421 1112222
Q ss_pred CCCCceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 323 RSGRLDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 323 r~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
.. -|+..+.+|+|+..+...++...+..
T Consensus 238 eK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 238 EK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred Hh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 21 46678999999998888887776543
No 296
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.87 E-value=1.4e-05 Score=70.44 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=30.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+++..++|+||||||||++|+.+|+.++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 45668999999999999999999999998887543
No 297
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=2.9e-05 Score=68.44 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=29.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
.+++.||||+||||+|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999888874
No 298
>PHA02774 E1; Provisional
Probab=97.85 E-value=6.7e-05 Score=77.11 Aligned_cols=131 Identities=15% Similarity=0.252 Sum_probs=72.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE-EEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-LKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~-~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
|.+..++++|+||||||||++|.+|++.++..+ ..+|... .+ .+..+... .+++|||+-.-+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F----------wLqpl~d~--ki~vlDD~t~~~-- 492 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF----------WLQPLADA--KIALLDDATHPC-- 492 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc----------ccchhccC--CEEEEecCcchH--
Confidence 333346799999999999999999999986444 3355421 11 02222222 399999992211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCC------CC-----CCeEEEEEeCCCCCCC---hhhhCCCCceeEEEcCCC---
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFS------SD-----DRIKVIAATNRADILD---PALMRSGRLDRKIELPHP--- 336 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~-----~~vivI~ttn~~~~l~---~~l~r~~Rf~~~i~~~~p--- 336 (418)
.......|..+|+ +.. .. ....+|.|||..-.-+ ..|.+ |+ ..+.|+.|
T Consensus 493 --------w~y~d~~Lrn~Ld---G~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~s--Ri-~~f~F~n~~P~ 558 (613)
T PHA02774 493 --------WDYIDTYLRNALD---GNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHS--RI-TVFEFPNPFPL 558 (613)
T ss_pred --------HHHHHHHHHHHcC---CCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhh--hE-EEEECCCCCCc
Confidence 1122233334443 210 00 1234788998533323 23334 66 35566532
Q ss_pred ----------CHHHHHHHHHHHhhcCCCCC
Q 039866 337 ----------SEEARARILQIHSRKMTVHP 356 (418)
Q Consensus 337 ----------~~~~r~~il~~~~~~~~~~~ 356 (418)
+...-..+++++...+.+..
T Consensus 559 d~~G~P~f~ltd~~WKsFF~rlw~~LdL~d 588 (613)
T PHA02774 559 DENGNPVFELTDANWKSFFERLWSQLDLSD 588 (613)
T ss_pred CCCCCEeeeeCchhHHHHHHHHHHHcCCCC
Confidence 23456677777777777663
No 299
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.84 E-value=0.00017 Score=67.28 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=30.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|++++..+|++||||+|||++|..++... +.+.+++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 67788889999999999999999876542 556666654
No 300
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.83 E-value=0.00017 Score=67.72 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCc------EEEEcc------chhhhhh--------hcchHHH-H---HHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNAT------FLKLAG------PQLVQMF--------IGDGAKL-V---RDAFQL 253 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~------~~~i~~------s~l~~~~--------~g~~~~~-~---~~~~~~ 253 (418)
.+..++|.||+|+|||++++.+++..... ++.+.. .++.... .+..... + ..+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 44569999999999999999999977432 223111 1222221 1221111 1 122222
Q ss_pred H----HhCCCeEEEEcCCCcccccCC-------CCCC-CCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 254 A----KEKSPCIIFIDEIDAIGTKRF-------DSEV-SGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 254 a----~~~~~~vl~iDEid~l~~~~~-------~~~~-~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
+ ..+...+||+||+.++..... ...+ +.++.+...+-+++........++.+.++.|..
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~ 165 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehe
Confidence 2 234567999999998754321 1111 124455566667776544443456677776554
No 301
>PRK04296 thymidine kinase; Provisional
Probab=97.83 E-value=0.0002 Score=64.54 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=41.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc----hhhh---hhhcch-----HHHHHHHHHHH--HhCCCeEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP----QLVQ---MFIGDG-----AKLVRDAFQLA--KEKSPCIIF 263 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s----~l~~---~~~g~~-----~~~~~~~~~~a--~~~~~~vl~ 263 (418)
-.+++||+|+|||+++..++..+ +..++.++.+ .... ...|-. ......++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 37899999999999999888765 5555555431 1000 011110 00112233333 334567999
Q ss_pred EcCCCcc
Q 039866 264 IDEIDAI 270 (418)
Q Consensus 264 iDEid~l 270 (418)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999876
No 302
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00013 Score=73.58 Aligned_cols=113 Identities=26% Similarity=0.393 Sum_probs=73.6
Q ss_pred eecCCcchhhhhhccccccC-CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHH
Q 039866 140 LDTLPSEYDSRVKAMEVDEK-PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~-~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~laka 218 (418)
+.++|..+..++-..-+... ...+|++++......+.+...+. .|.+-+|++||+|+|||++..+
T Consensus 212 vStlP~~~GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 212 VSTLPTFYGEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred EecCCCCCCcEEEEEEeccccccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHH
Confidence 46888777666543333333 25678889888888888888763 2333488999999999999999
Q ss_pred HHHHhCCc---EEEEccc-hhhhh---------hhcchHHHHHHHHHHHHhCCCeEEEEcCCCc
Q 039866 219 CAAQTNAT---FLKLAGP-QLVQM---------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA 269 (418)
Q Consensus 219 la~~l~~~---~~~i~~s-~l~~~---------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~ 269 (418)
+.++++.+ ++.+.-+ ++.-. -.|-+ ....+..+.+..|.||++.||-.
T Consensus 278 ~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 278 ALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLT---FARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred HHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCC---HHHHHHHHhccCCCeEEEeccCC
Confidence 99988543 3333221 11111 11211 22455666788999999999964
No 303
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.82 E-value=0.00012 Score=66.31 Aligned_cols=68 Identities=26% Similarity=0.425 Sum_probs=42.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC----CcEEEEccc-hhhhh---------hhcchHHHHHHHHHHHHhCCCeEEEEcC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGP-QLVQM---------FIGDGAKLVRDAFQLAKEKSPCIIFIDE 266 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~----~~~~~i~~s-~l~~~---------~~g~~~~~~~~~~~~a~~~~~~vl~iDE 266 (418)
-++|.||+|+|||+++++++..+. ..++.+..+ ++... -+|.........+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 389999999999999999988773 233333221 22110 1122222234455566667899999999
Q ss_pred CC
Q 039866 267 ID 268 (418)
Q Consensus 267 id 268 (418)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 304
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.00015 Score=65.72 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=49.2
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh--------CCcEEEEcc-chhhhhhhcc-------------hHHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT--------NATFLKLAG-PQLVQMFIGD-------------GAKLVRDAFQLAKE 256 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l--------~~~~~~i~~-s~l~~~~~g~-------------~~~~~~~~~~~a~~ 256 (418)
..+.|+.||||||||++.|-+|+.+ ...+..++- +++..-..|. ....-..+...++.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 3468999999999999999999965 233455553 3333222221 11222356778899
Q ss_pred CCCeEEEEcCCCcc
Q 039866 257 KSPCIIFIDEIDAI 270 (418)
Q Consensus 257 ~~~~vl~iDEid~l 270 (418)
..|.|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 99999999999764
No 305
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.78 E-value=1.3e-05 Score=70.60 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=20.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999887
No 306
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.77 E-value=0.00017 Score=73.56 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=54.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh------hcc--------hHHHHHHHHHHHHhC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD--------GAKLVRDAFQLAKEK 257 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~------~g~--------~~~~~~~~~~~a~~~ 257 (418)
|+.+..-++++|+||+|||+++..++... +.++++++..+-.... +|- .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 66777779999999999999999998765 4567777764432221 111 011234555666677
Q ss_pred CCeEEEEcCCCcccc
Q 039866 258 SPCIIFIDEIDAIGT 272 (418)
Q Consensus 258 ~~~vl~iDEid~l~~ 272 (418)
.|.+++||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 889999999998754
No 307
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.76 E-value=7.5e-05 Score=63.54 Aligned_cols=36 Identities=25% Similarity=0.575 Sum_probs=28.4
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+++.||||+|||++|+.++..++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999988 4555555554443
No 308
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.75 E-value=5e-05 Score=68.81 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
+.+++.||||||||++++.+...+ +..++.+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 457888999999999999987765 5566666543
No 309
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.75 E-value=0.00012 Score=63.33 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.4
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..++|+||+|+|||++.|++|...
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4566679999999999999999999853
No 310
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=6.2e-05 Score=66.61 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
.+++.|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 378999999999999999999999888777653
No 311
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.75 E-value=7.3e-05 Score=67.54 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=58.2
Q ss_pred ceeecCCCCcHHHHHHHH-HHHh---CCcEEEEccchhhhhhh----cchHH-------------HHHHHHHHHHhCCCe
Q 039866 202 VLLYGPPGTGKTLMARAC-AAQT---NATFLKLAGPQLVQMFI----GDGAK-------------LVRDAFQLAKEKSPC 260 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakal-a~~l---~~~~~~i~~s~l~~~~~----g~~~~-------------~~~~~~~~a~~~~~~ 260 (418)
.+++|.||+|||+.|-.. .... +++++. |...+.-..+ +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 4332 666555 5442221111 10000 000111111111457
Q ss_pred EEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCC
Q 039866 261 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 261 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
+|+|||++...+.+..... .....+ ++|.... ..+.-||++|..+..+++.++. +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~----~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK----KVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc----cchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999887743111 112222 4444322 2356688999999999999987 78777766543
No 312
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00027 Score=70.43 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=66.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-------CCcEEEEccchhhh-------hh---------hcchHHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGPQLVQ-------MF---------IGDGAKLVRDAFQLAK 255 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-------~~~~~~i~~s~l~~-------~~---------~g~~~~~~~~~~~~a~ 255 (418)
|..++|+||+|+||||++..+|..+ +..+..+++..+.. .| .......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 5579999999999999999998765 23444444332210 11 111222233333333
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-CCeEEEEEeCCCCCCChhhhCCCCc-eeEEEc
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRL-DRKIEL 333 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~vivI~ttn~~~~l~~~l~r~~Rf-~~~i~~ 333 (418)
....+|+||.+..... +......+..++... ... ..++|+.+|.....+...+.+-..+ ...+-|
T Consensus 253 -~~~DlVLIDTaGr~~~---------~~~~l~el~~~l~~~---~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK---------DFMKLAEMKELLNAC---GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCcc---------CHHHHHHHHHHHHhc---CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 3457999999987631 222223334444432 222 3455666665555554333321111 124555
Q ss_pred CCCCHHHHH
Q 039866 334 PHPSEEARA 342 (418)
Q Consensus 334 ~~p~~~~r~ 342 (418)
.-.|...+.
T Consensus 320 TKlDet~~~ 328 (388)
T PRK12723 320 TKLDETTCV 328 (388)
T ss_pred EeccCCCcc
Confidence 555554443
No 313
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.74 E-value=0.00011 Score=67.97 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=50.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhh--------------h-----------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM--------------F----------------- 239 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~--------------~----------------- 239 (418)
|++++..+|+.||||||||+++..++... +.+++++...+-... +
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 66777779999999999999999876543 677777765322111 0
Q ss_pred --hcchHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 240 --IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 240 --~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
..........+...+....+.+++||-+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0112333455556666667789999999888
No 314
>PHA02624 large T antigen; Provisional
Probab=97.73 E-value=7.7e-05 Score=77.00 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=70.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 274 (418)
|++..+.++|+||||||||+++++|++.++...+.++++.-...+ -+.-+.. ..+.+||++-.-+-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F----------wL~pl~D--~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF----------ELGCAID--QFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH----------Hhhhhhh--ceEEEeeecccccccc
Confidence 455566799999999999999999999997777778865432211 1111111 1388899885443211
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCC-C------CCCC-----eEEEEEeCCCCCCChhhhCCCCceeEEEcCC
Q 039866 275 FDSEVSGDREVQRTMLELLNQLDGF-S------SDDR-----IKVIAATNRADILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 275 ~~~~~~~~~~~~~~l~~ll~~~~~~-~------~~~~-----vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~ 335 (418)
.+ -..|. .+. -+..+=+.++|. . .... -..|.||| ...++..+.- ||..++.|..
T Consensus 495 ~~-Lp~G~-~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KD-LPSGQ-GMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cc-CCccc-ccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHH--HHHHhccccc
Confidence 00 00000 010 011222223332 0 0111 11577887 4678888887 9988888853
No 315
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.72 E-value=0.00089 Score=74.53 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccc--h-----hhhhh---h-----cc---------------hHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP--Q-----LVQMF---I-----GD---------------GAKLVR 248 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s--~-----l~~~~---~-----g~---------------~~~~~~ 248 (418)
.+-++++||+|.|||+++..++...+ ++..++.. + |...+ + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34599999999999999999987765 55444432 1 11110 0 00 001122
Q ss_pred HHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC-hhhhCCCC
Q 039866 249 DAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD-PALMRSGR 326 (418)
Q Consensus 249 ~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~-~~l~r~~R 326 (418)
.++..... ..|.+|+||++|.+. ++.+...+..++... ..++.+|.+|.....+. ..+.-.+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhcCc
Confidence 23333333 568899999999883 334455666666542 23444544555422222 12221112
Q ss_pred ceeEEEcC----CCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcH
Q 039866 327 LDRKIELP----HPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNG 372 (418)
Q Consensus 327 f~~~i~~~----~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~ 372 (418)
.+.+. +.+.++-.+++...+.. .+ +......+...|.|+..
T Consensus 176 ---~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 176 ---LLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWAT 220 (903)
T ss_pred ---ceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHH
Confidence 33444 67888888888765432 22 23456778888888754
No 316
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.71 E-value=0.00012 Score=67.52 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---C------CcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---N------ATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~------~~~~~i~~s 233 (418)
|+++..-+.|+||||+|||++|..++... + ..+++++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 56677779999999999999999998753 3 566777764
No 317
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.71 E-value=0.0001 Score=69.91 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=44.0
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCC----------cEEEEc-cchhhhhhh-------cc------hHHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNA----------TFLKLA-GPQLVQMFI-------GD------GAKLVRDAFQLAK 255 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~----------~~~~i~-~s~l~~~~~-------g~------~~~~~~~~~~~a~ 255 (418)
.+++|.||+|+|||++.++++..+.. .+..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999997632 222222 122221111 10 1111234666777
Q ss_pred hCCCeEEEEcCCC
Q 039866 256 EKSPCIIFIDEID 268 (418)
Q Consensus 256 ~~~~~vl~iDEid 268 (418)
...|.++++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7889999999963
No 318
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.70 E-value=0.00011 Score=68.37 Aligned_cols=117 Identities=16% Similarity=0.265 Sum_probs=63.8
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchhhh--hh-------------------h----
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLVQ--MF-------------------I---- 240 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l~~--~~-------------------~---- 240 (418)
|+++..-+.|+||||+|||++|..++... +..+++++..+-.. .+ +
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56677779999999999999999998543 25677777643110 00 0
Q ss_pred --cchHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 241 --GDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 241 --g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
.+....+..+-...... .+.+|+||-+..+......+.. ....-.+.+.+++..+..+....++.||+|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRG-ELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00011122233334445 7899999999887532111110 01222334444444443333334566666643
No 319
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.70 E-value=0.00071 Score=62.81 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=76.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCc--EEEEccchhhhhh--------hcc------hHHHHH---H-HHHHHH-
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQMF--------IGD------GAKLVR---D-AFQLAK- 255 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~--~~~i~~s~l~~~~--------~g~------~~~~~~---~-~~~~a~- 255 (418)
..|-.+++.|++|||||++++.+...+... .+.+-++.....+ +.. .+..+. . +-....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 345579999999999999999998876432 2222222111111 100 011111 1 111111
Q ss_pred --h---CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeE
Q 039866 256 --E---KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRK 330 (418)
Q Consensus 256 --~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~ 330 (418)
. .++.+|+||++..- ..-...+.+++..++. -++.+|.++.....++|.++. -.+..
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~------------~~k~~~l~~~~~~gRH----~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK------------KLKSKILRQFFNNGRH----YNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc------------hhhhHHHHHHHhcccc----cceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 23579999997431 1122446667665332 357788888888899999876 67777
Q ss_pred EEcCCCCHHHHHHHHHHH
Q 039866 331 IELPHPSEEARARILQIH 348 (418)
Q Consensus 331 i~~~~p~~~~r~~il~~~ 348 (418)
+.++ .+..+...|++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 7675 4666655555543
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.70 E-value=0.00028 Score=61.90 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=64.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchh--------hhhhhcc---h--HHHHHHHHHHHHhCCCe
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQL--------VQMFIGD---G--AKLVRDAFQLAKEKSPC 260 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l--------~~~~~g~---~--~~~~~~~~~~a~~~~~~ 260 (418)
+.++..+.|.||+|+|||+|.+.++.... .--+.++...+ ....++. . ....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 45667799999999999999999998652 11233333211 1111111 1 11223345566667889
Q ss_pred EEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 261 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 261 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
++++||--.-. +......+.+++..+.. .+ ..+|.+|+..+
T Consensus 103 illlDEP~~~L----------D~~~~~~l~~~l~~~~~---~~-~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTAAL----------TPAEVERLFKVIRRLRA---QG-VAVIFISHRLD 143 (163)
T ss_pred EEEEECCCcCC----------CHHHHHHHHHHHHHHHH---CC-CEEEEEeCCHH
Confidence 99999986433 56667778888876532 22 34555666543
No 321
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00052 Score=63.15 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=91.5
Q ss_pred CCCceeecCCC-CcHHHHHHHHHHHhCC---------cEEEEccchhh---hhhhcchHHHHHHHHHHHH----hCCCeE
Q 039866 199 PKGVLLYGPPG-TGKTLMARACAAQTNA---------TFLKLAGPQLV---QMFIGDGAKLVRDAFQLAK----EKSPCI 261 (418)
Q Consensus 199 ~~~vLl~Gp~G-tGKT~lakala~~l~~---------~~~~i~~s~l~---~~~~g~~~~~~~~~~~~a~----~~~~~v 261 (418)
.+.+||.|..+ +||..++..++..+.+ .++.+....-. +..+ .-..+|.+...+. .....|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 45699999998 9999999998887632 23333211000 0011 1233444444443 334579
Q ss_pred EEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHH
Q 039866 262 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEAR 341 (418)
Q Consensus 262 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r 341 (418)
++|+++|.+ ..+..+.|+-.|++ ++.++++|..|+.+..+.|.+++ |+ ..+.|+.|....-
T Consensus 93 iII~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAY 153 (263)
T ss_pred EEEechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHH
Confidence 999999999 55667777777764 45678888888889999999999 88 5889999998877
Q ss_pred HHHHHHHhhcC
Q 039866 342 ARILQIHSRKM 352 (418)
Q Consensus 342 ~~il~~~~~~~ 352 (418)
.+....++...
T Consensus 154 ~e~~~~~~~p~ 164 (263)
T PRK06581 154 NELYSQFIQPI 164 (263)
T ss_pred HHHHHHhcccc
Confidence 77776666543
No 322
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.67 E-value=0.00028 Score=69.61 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=60.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC-----CcEEEEccchh-------hhhh---------hcchHHHHH---HHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAGPQL-------VQMF---------IGDGAKLVR---DAFQLAK 255 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i~~s~l-------~~~~---------~g~~~~~~~---~~~~~a~ 255 (418)
...+|+||||+|||+|++.+++... ..++.+...+. .... -......++ .+++.|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 3489999999999999999998763 22222222221 1111 111122222 2223322
Q ss_pred ----hCCCeEEEEcCCCcccccCCC-------CC-CCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 256 ----EKSPCIIFIDEIDAIGTKRFD-------SE-VSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 256 ----~~~~~vl~iDEid~l~~~~~~-------~~-~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
.+...+||+||++++...... .. .+-++.+...+-.++.........+.+-+|+|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 345579999999998643321 00 112344445555666654444445666666663
No 323
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00036 Score=65.23 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+..|.+.......+..++. ....+++.||+|||||++|.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---------------~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---------------SKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445566666666555542 1236899999999999999999885
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.00032 Score=71.04 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=45.8
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh-------h--------hhc-----chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ-------M--------FIG-----DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~-------~--------~~g-----~~~~~~~~~~~~a 254 (418)
+|..++|+|++|+|||+++..+|..+ +..+..+++..+.. . +.+ +....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 56679999999999999999999877 55666666543311 0 011 1112233444444
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
... .+|+||....+
T Consensus 174 ~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 174 KKA--DVIIVDTAGRH 187 (437)
T ss_pred hcC--CEEEEECCCcc
Confidence 443 69999998766
No 325
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.66 E-value=0.00039 Score=65.83 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|+++...++++||||||||++|-.++... +.++++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 56677779999999999999999987643 556655553
No 326
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.65 E-value=0.00035 Score=63.45 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
...+.++|+||+|+|||+++|.++..
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34456899999999999999999853
No 327
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.64 E-value=8.2e-05 Score=73.40 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=46.3
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC----CcEEEEcc-chhhh---------hhhcchHHHHHHHHHHHHhCCCeEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAG-PQLVQ---------MFIGDGAKLVRDAFQLAKEKSPCIIF 263 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~----~~~~~i~~-s~l~~---------~~~g~~~~~~~~~~~~a~~~~~~vl~ 263 (418)
+...++|.||+|+||||+++++...+. ..++.+.. .++.. .-+|.........+..+.+..|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 345689999999999999999998763 23444422 22211 11222222244556667778999999
Q ss_pred EcCCC
Q 039866 264 IDEID 268 (418)
Q Consensus 264 iDEid 268 (418)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 328
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.63 E-value=0.00039 Score=62.93 Aligned_cols=101 Identities=25% Similarity=0.428 Sum_probs=56.8
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhh---hc----------chHHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF---IG----------DGAKLVRDAFQLAK 255 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~---~g----------~~~~~~~~~~~~a~ 255 (418)
|+.++|.||+|+||||++-.+|..+ +..+..+.+..+. ..| .| +........++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4468999999999999999998866 4444434332211 111 11 12233445566666
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
.....+|+||=...... +.+....+..+++.. .+..+.++++++
T Consensus 81 ~~~~D~vlIDT~Gr~~~---------d~~~~~el~~~~~~~----~~~~~~LVlsa~ 124 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPR---------DEELLEELKKLLEAL----NPDEVHLVLSAT 124 (196)
T ss_dssp HTTSSEEEEEE-SSSST---------HHHHHHHHHHHHHHH----SSSEEEEEEEGG
T ss_pred hcCCCEEEEecCCcchh---------hHHHHHHHHHHhhhc----CCccceEEEecc
Confidence 66667999998765421 334445555666554 233455555544
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=97.62 E-value=0.00029 Score=68.87 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=46.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhh---hc----------chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF---IG----------DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~---~g----------~~~~~~~~~~~~a 254 (418)
.|..++|.||||+||||++..+|..+ +..+..+++..+. ..+ .| +.........+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35569999999999999999998866 4555555554221 110 01 1112223344455
Q ss_pred HhCCCeEEEEcCCCccc
Q 039866 255 KEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l~ 271 (418)
......+|+||....+.
T Consensus 219 ~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH 235 (336)
T ss_pred HhCCCCEEEEECCCccC
Confidence 55556799999998763
No 330
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.62 E-value=0.0007 Score=64.25 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=56.9
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEc-cchhhhh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA-GPQLVQM 238 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~-~s~l~~~ 238 (418)
++++++-....++.+...+. .+...++|.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 45566544555555555441 2334589999999999999999987763 3355553 2222111
Q ss_pred -----hhc-chHHHHHHHHHHHHhCCCeEEEEcCCCc
Q 039866 239 -----FIG-DGAKLVRDAFQLAKEKSPCIIFIDEIDA 269 (418)
Q Consensus 239 -----~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~ 269 (418)
.+. ........+...+.+..|.+|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 011 1111244566677788999999999963
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=0.0004 Score=59.57 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccch---hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQ---LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s~---l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
+.++..+.|.||+|+|||+++++++..... --+.++... +...+.+.. ..+-.+..+-...|.++++||-..-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~--~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE--KMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH--HHHHHHHHHHhcCCCEEEEeCCccC
Confidence 356667899999999999999999986521 112222210 111111111 1223345555667889999998643
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 271 GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
. +......+.+++.... ..+|.+|+..+
T Consensus 101 L----------D~~~~~~l~~~l~~~~-------~til~~th~~~ 128 (144)
T cd03221 101 L----------DLESIEALEEALKEYP-------GTVILVSHDRY 128 (144)
T ss_pred C----------CHHHHHHHHHHHHHcC-------CEEEEEECCHH
Confidence 2 5556667777776541 24666776543
No 332
>PRK06762 hypothetical protein; Provisional
Probab=97.62 E-value=0.00018 Score=63.15 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
.-++|+|+||+||||+|+.+++.++..++.++...+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 35889999999999999999999866677777655544
No 333
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.60 E-value=0.00043 Score=57.54 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
+++++||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999999887765
No 334
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00051 Score=61.97 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
.+..-+.|.||+|+||||+.|++..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4455699999999999999999976
No 335
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.60 E-value=0.00013 Score=75.65 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 249 DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 249 ~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
-.|..+--+.|.++||||.-... +++.+..+++++..- -..+.||..+.++.
T Consensus 524 lafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 524 LAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHhh-----CCCCEEEEeccchh
Confidence 45666667889999999986554 667788888888752 13456777777654
No 336
>PTZ00202 tuzin; Provisional
Probab=97.60 E-value=0.0024 Score=63.79 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=47.7
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
-.+++|.+..+..+...+.. .....++-+.|+||+|+|||++++.+...++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 45788999999999887632 1223445688999999999999999999998877777765
No 337
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.59 E-value=0.00024 Score=69.25 Aligned_cols=27 Identities=41% Similarity=0.738 Sum_probs=24.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+|+|++|||.-|||||+|.-.+...+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 468999999999999999999998765
No 338
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.59 E-value=0.00093 Score=68.00 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=84.6
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc-cch---hhhhh
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA-GPQ---LVQMF 239 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~-~s~---l~~~~ 239 (418)
-..|.|++.+++.|.-.+.-.... .+-....++..-++|+.|.|.|.||-|.|++.+-....+-.-. +|. +....
T Consensus 300 APSI~GH~~vKkAillLLlGGvEk-~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 300 APSIYGHDYVKKAILLLLLGGVEK-NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred CcccccHHHHHHHHHHHHhcccee-ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 345789999999887655322110 0000011233346999999999999999999875432211110 010 00000
Q ss_pred h---cchHHHHH-HHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc--------CCCCCCCeEE
Q 039866 240 I---GDGAKLVR-DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--------GFSSDDRIKV 307 (418)
Q Consensus 240 ~---g~~~~~~~-~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~~~viv 307 (418)
. ..+++.+. ...-. ...+|++|||+|++.. --...+.+++++.. ...-+.+|-|
T Consensus 379 TtD~eTGERRLEAGAMVL---ADRGVVCIDEFDKMsD-----------iDRvAIHEVMEQqtVTIaKAGIHasLNARCSV 444 (818)
T KOG0479|consen 379 TTDQETGERRLEAGAMVL---ADRGVVCIDEFDKMSD-----------IDRVAIHEVMEQQTVTIAKAGIHASLNARCSV 444 (818)
T ss_pred eeccccchhhhhcCceEE---ccCceEEehhcccccc-----------hhHHHHHHHHhcceEEeEeccchhhhccceee
Confidence 0 01122210 01111 1246999999999841 11234566666422 1223568999
Q ss_pred EEEeCCCC-------------CCChhhhCCCCceeEEEc
Q 039866 308 IAATNRAD-------------ILDPALMRSGRLDRKIEL 333 (418)
Q Consensus 308 I~ttn~~~-------------~l~~~l~r~~Rf~~~i~~ 333 (418)
+++.|+.+ .|+..+++ |||..+.+
T Consensus 445 lAAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 445 LAAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred eeecCccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 99999853 47788998 99975443
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.59 E-value=0.00071 Score=62.47 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
|++++..+++.|+||+|||++|..++... +.++++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 66777779999999999999999887653 6677777654
No 340
>PRK04328 hypothetical protein; Provisional
Probab=97.58 E-value=0.00076 Score=63.47 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=29.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|++++..+|++||||||||+++..++... +.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 56777789999999999999999876542 556666654
No 341
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.58 E-value=0.00032 Score=75.24 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=51.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHH---hCCcEEEEccchhhhh-h---h------------cchHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQ---TNATFLKLAGPQLVQM-F---I------------GDGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~---l~~~~~~i~~s~l~~~-~---~------------g~~~~~~~~~~~~a~ 255 (418)
|+++...++++||||||||+||..++.. .+..+++++..+-... + + ...+.....+-..++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5667777999999999999999776543 3667777776542220 0 0 111222222333445
Q ss_pred hCCCeEEEEcCCCcccc
Q 039866 256 EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~ 272 (418)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999986
No 342
>PRK03839 putative kinase; Provisional
Probab=97.56 E-value=6.2e-05 Score=67.08 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999998886554
No 343
>PRK13947 shikimate kinase; Provisional
Probab=97.56 E-value=6.7e-05 Score=66.12 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=28.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+++|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987655
No 344
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00074 Score=66.83 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh----h---hh-
Q 039866 171 EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV----Q---MF- 239 (418)
Q Consensus 171 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~----~---~~- 239 (418)
...++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++..+. . .|
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 455555655554333322111 1234679999999999999999999876 3455555553221 1 11
Q ss_pred --------hcchHHHHHHHHHHHHh-CCCeEEEEcCCCcc
Q 039866 240 --------IGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAI 270 (418)
Q Consensus 240 --------~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l 270 (418)
....+..+......+.. ....+||||-....
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 11233444445555543 24579999988765
No 345
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.55 E-value=0.00039 Score=64.91 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~ 232 (418)
|+.+..-++|.|+||+|||+++..++... +.+++++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67777789999999999999999887654 677777764
No 346
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00014 Score=67.07 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++.-+-|.||+|||||||.+.+|...
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999853
No 347
>PRK00625 shikimate kinase; Provisional
Probab=97.54 E-value=7e-05 Score=66.37 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=28.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+++|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999887765
No 348
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.53 E-value=0.00081 Score=61.72 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.1
Q ss_pred CCceeecCCCCcHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~ 221 (418)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999984
No 349
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.53 E-value=8.3e-05 Score=64.13 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=30.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
+++|+||||+|||++|+.++..++.+++..+ .+.....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~ 38 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRA 38 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHc
Confidence 4789999999999999999999998877554 4444333
No 350
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.53 E-value=0.00051 Score=62.45 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
++..++|+||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 445699999999999999999984
No 351
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00036 Score=69.05 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
..+..++|.||+|+||||++..+|..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999999864
No 352
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.53 E-value=0.00045 Score=61.03 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=28.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
.+|+.||||+|||++|..++..++.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988777777654
No 353
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.52 E-value=0.00083 Score=60.81 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
.-+++.|+||+|||++|+.++..++..+ +..+++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 4589999999999999999999987654 344443
No 354
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.52 E-value=7.7e-05 Score=66.22 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
+-++|.||||+|||++|+.++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 458999999999999999999999887776665444
No 355
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.002 Score=64.47 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhh-------hh---hc---chHHHHHHHHHHHHhCCCe
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQ-------MF---IG---DGAKLVRDAFQLAKEKSPC 260 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~-------~~---~g---~~~~~~~~~~~~a~~~~~~ 260 (418)
++..++|.||+|+||||++..+|... +..+..+++..+.. .| .| ........+...+....+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34458899999999999999999754 44555555543211 11 01 0111123344444445667
Q ss_pred EEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 261 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 261 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
+|+||=...... +......+..++...........++|+.++...+.+.
T Consensus 302 ~VLIDTaGr~~r---------d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 302 LILIDTAGYSHR---------NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred EEEEeCCCCCcc---------CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 999997544311 2233334444444332212223455555555544443
No 356
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.51 E-value=0.0006 Score=60.15 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh----------------h-hcchHHHHHHHHHHHHhCCCeEEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM----------------F-IGDGAKLVRDAFQLAKEKSPCIIFI 264 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~----------------~-~g~~~~~~~~~~~~a~~~~~~vl~i 264 (418)
+|++||+|+|||++|..++...+.+.+++....-.+. + ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887777777765422111 0 1122223333332221 4669999
Q ss_pred cCCCcccccCCCCCCCC-CHHHHHHHHHHHHhhc
Q 039866 265 DEIDAIGTKRFDSEVSG-DREVQRTMLELLNQLD 297 (418)
Q Consensus 265 DEid~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~ 297 (418)
|-+..+..+-...+... ...+...+..++..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 99988765543221100 0223344455665544
No 357
>PRK13948 shikimate kinase; Provisional
Probab=97.51 E-value=0.00014 Score=64.94 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=34.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIG 241 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g 241 (418)
+++.+++|.|++|+|||++++.+|+.++.+|+..| .+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 46678999999999999999999999999998555 34444333
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.00085 Score=59.66 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccch--hhhhhhcch-HHHHHHHHHHHHhCCCeEEEEcCCCccc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQ--LVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~--l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~ 271 (418)
.+...+.|.||+|+|||||++.++.... .--+.++... +......-+ ....+-.+..+-...|.++++||--.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4556688999999999999999998652 1122333211 111100001 1122234445556678999999986433
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 272 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+......+..++..... .....+|.+|+..
T Consensus 103 ----------D~~~~~~l~~~l~~~~~---~~~~tiiivsH~~ 132 (177)
T cd03222 103 ----------DIEQRLNAARAIRRLSE---EGKKTALVVEHDL 132 (177)
T ss_pred ----------CHHHHHHHHHHHHHHHH---cCCCEEEEEECCH
Confidence 55666677777765421 1213456666644
No 359
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=0.0018 Score=57.33 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++|.|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988765
No 360
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00025 Score=62.07 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=29.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.+++|.|++|+||||+.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998665
No 361
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0009 Score=59.07 Aligned_cols=107 Identities=24% Similarity=0.324 Sum_probs=62.5
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccchhh-------hhhhc-----------------chHH-HHH
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLV-------QMFIG-----------------DGAK-LVR 248 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s~l~-------~~~~g-----------------~~~~-~~~ 248 (418)
+.+...+.|.||+|+|||+|++.++..... --+.++...+. ...++ -+.+ ..+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 356667999999999999999999987521 11223221110 00000 0001 112
Q ss_pred HHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 249 DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 249 ~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
-.+..+-...|.++++||--.-. +......+.+++..+.. + ..+|++|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~~----~-~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSAL----------DPETEALILEALRALAK----G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhcC----C-CEEEEEecCHHHH
Confidence 23444555678999999975432 55666777777776531 2 4566777765443
No 362
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.48 E-value=0.00034 Score=67.91 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=63.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHH---------hCCcEEEEccchhh--hhh------hcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQ---------TNATFLKLAGPQLV--QMF------IGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~---------l~~~~~~i~~s~l~--~~~------~g~--------------- 242 (418)
|+++..-+.|+||||+|||.+|..+|-. .+..+++++..+-+ ... .|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 5667777899999999999999988742 24577788764311 000 000
Q ss_pred -hHH---HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 243 -GAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 243 -~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
.+. .+..+........+.+|+||-+-.+......+ .....+-+..+.+++..+..+....++.||.|.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 111 11222223344567899999999886542221 111122233345555444433334455555553
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00082 Score=58.36 Aligned_cols=106 Identities=26% Similarity=0.339 Sum_probs=61.7
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhhh-------hhhcc----hHH-HHHHHHHHHHhCCCeE
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQ-------MFIGD----GAK-LVRDAFQLAKEKSPCI 261 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~~-------~~~g~----~~~-~~~~~~~~a~~~~~~v 261 (418)
+.+...+.|.||+|+|||+++++++..+. .--+.++...... ..++. +.+ ..+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 34566799999999999999999998763 1223444322110 11111 111 1222344444556889
Q ss_pred EEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 262 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 262 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
+++||...-. +......+.+++..... . +..+|.+|+..+
T Consensus 102 ~ilDEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~ 141 (157)
T cd00267 102 LLLDEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPE 141 (157)
T ss_pred EEEeCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 9999987533 45556667777765432 1 234666776544
No 364
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.47 E-value=9.6e-05 Score=65.88 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.1
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
++++|||||||||+|+.+|..++. ..+++++++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 689999999999999999999875 556666665443
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=97.47 E-value=0.00031 Score=65.22 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
|+++...++|.|+||+|||+++-.++... |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 67777789999999999999999887754 6666666643
No 366
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.47 E-value=0.00089 Score=60.74 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCC-CCceeecCCCCcHHHHHHHHH
Q 039866 197 RPP-KGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 197 ~~~-~~vLl~Gp~GtGKT~lakala 220 (418)
.++ +.++|+||.|+|||++.+.++
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 344 359999999999999999998
No 367
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.46 E-value=0.00059 Score=61.37 Aligned_cols=126 Identities=19% Similarity=0.282 Sum_probs=74.8
Q ss_pred cchHHHHhcC--CCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc----hhhhh------------------
Q 039866 186 THKERFQKLG--VRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP----QLVQM------------------ 238 (418)
Q Consensus 186 ~~~~~~~~~g--~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s----~l~~~------------------ 238 (418)
.+.++-.++| ++-+.-+++.|+.|||||.++..++.-+ +....++... ++...
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 3444555554 4444448899999999999999998743 3333333321 11100
Q ss_pred -----------hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 239 -----------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 239 -----------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
-.....+.+..+.+..+.....|++||-+..+.... -....++++..+..+...+++ |
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKv-I 161 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKV-I 161 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCE-E
Confidence 011223445566666677777899999998875331 123455666665555555666 4
Q ss_pred EEEeCCCCCCChhhhC
Q 039866 308 IAATNRADILDPALMR 323 (418)
Q Consensus 308 I~ttn~~~~l~~~l~r 323 (418)
|.|.| |+.++.+.+.
T Consensus 162 ilTvh-p~~l~e~~~~ 176 (235)
T COG2874 162 ILTVH-PSALDEDVLT 176 (235)
T ss_pred EEEeC-hhhcCHHHHH
Confidence 44555 5777777665
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.46 E-value=0.00049 Score=65.46 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~ 232 (418)
|+.+...++|.||||+|||+++..++... +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45667779999999999999999987764 556666664
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.46 E-value=0.0016 Score=63.47 Aligned_cols=73 Identities=32% Similarity=0.403 Sum_probs=45.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhh--------h----c-chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF--------I----G-DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~--------~----g-~~~~~~~~~~~~a 254 (418)
++..++|.||+|+||||++..+|..+ +..+..+++..+. ..| + + .........+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999876 4556555553321 011 0 0 1111222333444
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
......+|+||=...+
T Consensus 193 ~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 193 KARGIDVLIIDTAGRL 208 (318)
T ss_pred HhCCCCEEEEeCCCCC
Confidence 5566789999988765
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.46 E-value=0.00083 Score=59.68 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCC-------------cEEEEccchhhhh----------hhcchHH--HHHHH
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNA-------------TFLKLAGPQLVQM----------FIGDGAK--LVRDA 250 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~-------------~~~~i~~s~l~~~----------~~g~~~~--~~~~~ 250 (418)
+.++.-+.|.||+|+|||||.+++....+. ++..+.-.++... ....... ..+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 355666899999999999999999643221 1111110011111 1111111 12233
Q ss_pred HHHHHhCC--CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCce
Q 039866 251 FQLAKEKS--PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 328 (418)
Q Consensus 251 ~~~a~~~~--~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~ 328 (418)
+..+.... |.++++||.-.-. +......+.+++..... .+. .||++|+..+. .+ ..+
T Consensus 98 laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~~---~g~-tvIivSH~~~~-----~~--~~d 156 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLID---LGN-TVILIEHNLDV-----LS--SAD 156 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHHh---CCC-EEEEEeCCHHH-----HH--hCC
Confidence 44444556 8999999985543 55666777777766531 233 45666665432 23 455
Q ss_pred eEEEcC
Q 039866 329 RKIELP 334 (418)
Q Consensus 329 ~~i~~~ 334 (418)
+++.+.
T Consensus 157 ~i~~l~ 162 (176)
T cd03238 157 WIIDFG 162 (176)
T ss_pred EEEEEC
Confidence 555554
No 371
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.46 E-value=0.00028 Score=68.21 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEcc-chhhhh-------hhcchHHHHHHHHHHHHhCCCeEEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAG-PQLVQM-------FIGDGAKLVRDAFQLAKEKSPCIIFI 264 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~-s~l~~~-------~~g~~~~~~~~~~~~a~~~~~~vl~i 264 (418)
...++++.||+|+|||+++++++... +..++.+.. .++.-. ..+........++..+.+..|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 44589999999999999999999876 233444432 222110 01111224556778888899999999
Q ss_pred cCCC
Q 039866 265 DEID 268 (418)
Q Consensus 265 DEid 268 (418)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9995
No 372
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00011 Score=62.23 Aligned_cols=30 Identities=33% Similarity=0.686 Sum_probs=27.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
++|++|-||||||+++..+|..++.+++.+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 799999999999999999999988876644
No 373
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.45 E-value=0.0016 Score=57.78 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=62.6
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhh------hh---h----------------hcchH--HH
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLV------QM---F----------------IGDGA--KL 246 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~------~~---~----------------~g~~~--~~ 246 (418)
+.++..+.|.||+|+|||+|++.++.... .--+.++...+. .. | ..... ..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 45666799999999999999999998652 111233322110 00 0 00111 11
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q 039866 247 VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 316 (418)
Q Consensus 247 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~ 316 (418)
.+-.+..+-...|.++++||.-.-. +......+.+++.... .+ ..+|++|+.++.
T Consensus 105 qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~~-~tii~~sh~~~~ 159 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----KD-KTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----CC-CEEEEEecCHHH
Confidence 2233445556778999999986543 5566777888887653 12 345566665443
No 374
>PRK14532 adenylate kinase; Provisional
Probab=97.44 E-value=0.0001 Score=66.16 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=29.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+++|.||||+||||+|+.+|+.++.++ +++.+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 489999999999999999999988655 5555565543
No 375
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.44 E-value=0.00056 Score=67.07 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchh-h-hh------hhcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL-V-QM------FIGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l-~-~~------~~g~--------------- 242 (418)
|++...-+.|+||||||||.+|..+|-.. +..+++++...- . .. -+|-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 56666678999999999999999886422 356777776431 0 00 0000
Q ss_pred -hH---HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 243 -GA---KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 243 -~~---~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
.+ ..+..+.......++.+|+||-+-.+......+. ....+-+..+.+++..+.......++.||.|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 1112222334455688999999988765432211 11123344455555544333333455555553
No 376
>PRK13949 shikimate kinase; Provisional
Probab=97.44 E-value=0.0001 Score=65.07 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=28.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.||||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998887765
No 377
>PLN02200 adenylate kinase family protein
Probab=97.43 E-value=0.00022 Score=66.44 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
..|..+++.||||||||++|+.+|+.++.+ .+++++++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 345568999999999999999999998764 57777776543
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.42 E-value=0.0017 Score=57.29 Aligned_cols=32 Identities=34% Similarity=0.369 Sum_probs=26.8
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
+++.||||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998875 5667777765
No 379
>PRK06217 hypothetical protein; Validated
Probab=97.42 E-value=0.00013 Score=65.31 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=27.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.|+|.|+||+||||+|+++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876655
No 380
>PRK10867 signal recognition particle protein; Provisional
Probab=97.41 E-value=0.0011 Score=66.98 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=48.8
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhh-------h--------h-----cchHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM-------F--------I-----GDGAKLVRDAFQ 252 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~-------~--------~-----g~~~~~~~~~~~ 252 (418)
.+|..++|+||+|+||||++-.+|..+ +..+..+++..+... + + ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346679999999999999888888754 556677766432211 0 1 112233344555
Q ss_pred HHHhCCCeEEEEcCCCcc
Q 039866 253 LAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 253 ~a~~~~~~vl~iDEid~l 270 (418)
.++...+.+|++|=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666667789999988766
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.41 E-value=0.0026 Score=60.63 Aligned_cols=74 Identities=28% Similarity=0.391 Sum_probs=46.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhhh---c----------chHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMFI---G----------DGAKLVRDAFQL 253 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~~---g----------~~~~~~~~~~~~ 253 (418)
.+++.++|+||+|+|||+++..+|..+ +..+..+++..+. ..|. | +........+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 345678899999999999999998876 5566666654221 1110 1 111222233444
Q ss_pred HHhCCCeEEEEcCCCcc
Q 039866 254 AKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 254 a~~~~~~vl~iDEid~l 270 (418)
+....+.+++||=...+
T Consensus 150 ~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHCCCCEEEEeCCCCC
Confidence 45566789999988765
No 382
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.41 E-value=0.00013 Score=62.88 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=24.6
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
++|+|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776543
No 383
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.40 E-value=0.00092 Score=59.54 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhh---------------------------hhhhcchHHH
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLV---------------------------QMFIGDGAKL 246 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~---------------------------~~~~g~~~~~ 246 (418)
+.+...+.|.||+|+|||+|++.++.... .--+.++..... ..........
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35666799999999999999999998652 112333321110 0001111111
Q ss_pred --HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 247 --VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 247 --~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
.+-.+..+-...|.++++||--.-. +......+.+++..+.. ..+..+|.+|+.++
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~ 159 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLAR---ERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 1223444455678999999986432 55666777777776532 11234666776544
No 384
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.40 E-value=0.0018 Score=59.86 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|++++..++++||||+|||+++..++... +.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67777889999999999999999877532 455666654
No 385
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0024 Score=62.93 Aligned_cols=100 Identities=23% Similarity=0.390 Sum_probs=70.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh--CCcEEEEccchhhhhh------hc--------chHHHHHHHHHHHHhCC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT--NATFLKLAGPQLVQMF------IG--------DGAKLVRDAFQLAKEKS 258 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l--~~~~~~i~~s~l~~~~------~g--------~~~~~~~~~~~~a~~~~ 258 (418)
|+-|..-+|+-|.||.|||||.-.++..+ ..+++++.+.+-.... .| ..+..+..+...+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 45566669999999999999999998877 3479999887654432 11 13445667888888899
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 294 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 294 (418)
|.+++||-|..+.....++...+-..+...-..++.
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999876655444433334444444443
No 386
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.39 E-value=0.00028 Score=69.93 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=46.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC-----CcEEEEccc-hhh-----------hhhhcchHHHHHHHHHHHHhCCCeEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAGP-QLV-----------QMFIGDGAKLVRDAFQLAKEKSPCII 262 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i~~s-~l~-----------~~~~g~~~~~~~~~~~~a~~~~~~vl 262 (418)
..+|++||+|+||||+++++.+... ..++.+.-+ ++. ...+|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999988762 345555422 321 11122222234456667777899999
Q ss_pred EEcCCCc
Q 039866 263 FIDEIDA 269 (418)
Q Consensus 263 ~iDEid~ 269 (418)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999953
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00067 Score=60.66 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=21.1
Q ss_pred ceeecCCCCcHHHHHHHHHHHh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l 223 (418)
++|+|+||+|||++|+.+|+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999988
No 388
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.38 E-value=0.0019 Score=57.09 Aligned_cols=105 Identities=22% Similarity=0.365 Sum_probs=61.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchh--------hhh--hhc---------------chHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQL--------VQM--FIG---------------DGAKLVRD 249 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l--------~~~--~~g---------------~~~~~~~~ 249 (418)
.++..+.|.||+|+|||+|++.++.... .--+.++...+ ... |+. ......+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 4556689999999999999999998652 11122222111 000 000 00111233
Q ss_pred HHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 250 AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 250 ~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
.+..+-...|.++++||--.-. +......+.+++..+.. .+ ..+|++|+..+
T Consensus 106 ~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~---~~-~tii~~sh~~~ 157 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKA---AG-ATRIVIAHRPE 157 (173)
T ss_pred HHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHh---CC-CEEEEEeCCHH
Confidence 4555556788999999986533 56667777777776532 12 34566666443
No 389
>PRK14531 adenylate kinase; Provisional
Probab=97.38 E-value=0.00015 Score=64.91 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=28.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
.++++||||+|||++++.+|..++.+++ ++++++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 5899999999999999999999987654 4444443
No 390
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.38 E-value=0.00098 Score=58.58 Aligned_cols=102 Identities=30% Similarity=0.422 Sum_probs=60.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhC---Cc--------EEEEcc-chhh-----hh----hhcchHH--HHHHHHH
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTN---AT--------FLKLAG-PQLV-----QM----FIGDGAK--LVRDAFQ 252 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~---~~--------~~~i~~-s~l~-----~~----~~g~~~~--~~~~~~~ 252 (418)
+.+...+.|.||+|+|||+|++.++.... .. +.++.- ..+. +. ......+ ..+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 35666799999999999999999998652 11 111110 0010 00 0111111 1223445
Q ss_pred HHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 253 LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 253 ~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
.+-...|.++++||--.-. +......+.+++... + ..+|++|+.+
T Consensus 104 ral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~------~-~tiiivsh~~ 148 (166)
T cd03223 104 RLLLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL------G-ITVISVGHRP 148 (166)
T ss_pred HHHHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh------C-CEEEEEeCCh
Confidence 5556778999999986543 556677777777764 1 3456666654
No 391
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.37 E-value=0.00076 Score=67.13 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=57.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEccchhhhhhh-cchHHHHHHHHH-------------------HH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLVQMFI-GDGAKLVRDAFQ-------------------LA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s~l~~~~~-g~~~~~~~~~~~-------------------~a 254 (418)
.+..+++.||.|||||++.+++...+. ..++.+..+......+ |.. .++..|. ..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~--T~hs~f~i~~~~~~~~~~~~~~~~~~~~ 98 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGR--TIHSFFGIPINNNEKSQCKISKNSRLRE 98 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCc--chHHhcCccccccccccccccccchhhh
Confidence 566899999999999999999988773 3344444333333322 110 1111111 01
Q ss_pred HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC----CCCCCeEEEEEeC
Q 039866 255 KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF----SSDDRIKVIAATN 312 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----~~~~~vivI~ttn 312 (418)
....-.+|+|||+-.+ +......+...|..+... .+-+++.||+...
T Consensus 99 ~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 99 RLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred hhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 1112259999999887 445555555556554432 2234556666554
No 392
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.37 E-value=0.0033 Score=62.64 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=45.8
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC---CCCChhhhCCCCceeEEEcCCC
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA---DILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~---~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
.||+||++..-... +..+...|.++-..+-. .+---||+.|+.. ..|..++-+ |.-+.|.+...
T Consensus 150 PVVVIdnF~~k~~~--------~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaLPn--~vf~tI~L~Da 216 (431)
T PF10443_consen 150 PVVVIDNFLHKAEE--------NDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKALPN--RVFKTISLSDA 216 (431)
T ss_pred CEEEEcchhccCcc--------cchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhCCC--CceeEEeecCC
Confidence 49999999653211 22334444444332211 1111234444333 356666644 76688999999
Q ss_pred CHHHHHHHHHHHhhc
Q 039866 337 SEEARARILQIHSRK 351 (418)
Q Consensus 337 ~~~~r~~il~~~~~~ 351 (418)
+.+.-+.++..++..
T Consensus 217 s~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 217 SPESAKQYVLSQLDE 231 (431)
T ss_pred CHHHHHHHHHHHhcc
Confidence 998888888888764
No 393
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.37 E-value=0.0003 Score=63.41 Aligned_cols=136 Identities=22% Similarity=0.265 Sum_probs=60.4
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh-hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCC
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF-IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS 280 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 280 (418)
++|+||+|||||.+|-++|+.++.|++..+.-.+.... +|.+... -... ..-.=++|||-..- .
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~----~~el--~~~~RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT----PSEL--KGTRRIYLDDRPLS---------D 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT-------SGGG--TT-EEEES----GG---------G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC----HHHH--cccceeeecccccc---------C
Confidence 68999999999999999999999999999976555443 2322111 1111 11123788865432 1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCC---CCce-eEEEcCCCCHHHHHHHHHHHhhcCCC
Q 039866 281 GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRS---GRLD-RKIELPHPSEEARARILQIHSRKMTV 354 (418)
Q Consensus 281 ~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~---~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~ 354 (418)
|.-........++..+......+.+++=+-+. ..+..-..++ ..|. .+..++.|+.+....-.+.+.+++..
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 12223334444555555555534443333221 1111111110 0222 36677888887766655555555433
No 394
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.37 E-value=0.00016 Score=63.23 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=24.0
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
+++.||||+|||++|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986654
No 395
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.37 E-value=0.00019 Score=66.54 Aligned_cols=37 Identities=24% Similarity=0.589 Sum_probs=29.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
|..++|.||||+||||+|+.+|+.++.+++.+ .+++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 34599999999999999999999998765544 44543
No 396
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.36 E-value=0.00064 Score=60.95 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=46.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccc-hhhh---hhh----------cchHHHHHHHHHHHHhCCCe
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGP-QLVQ---MFI----------GDGAKLVRDAFQLAKEKSPC 260 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s-~l~~---~~~----------g~~~~~~~~~~~~a~~~~~~ 260 (418)
.....++|.||+|+|||+++++++.... ...+.+... ++.. .+. +........++..+.+..|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 4566799999999999999999998762 233333221 1110 000 01112345566677778899
Q ss_pred EEEEcCCC
Q 039866 261 IIFIDEID 268 (418)
Q Consensus 261 vl~iDEid 268 (418)
++++.|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999994
No 397
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.36 E-value=0.0019 Score=64.98 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=47.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh----------h-----hhc-----chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----------M-----FIG-----DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~----------~-----~~g-----~~~~~~~~~~~~a 254 (418)
+|..++|+||+|+||||++..+|..+ +..+..+++..+.. . +.+ +........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45669999999999999999999876 66667676643210 0 010 1112223345555
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
+.....+|+||=...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999988765
No 398
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.36 E-value=0.00056 Score=66.75 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccch
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQ 234 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~ 234 (418)
|++.+..++|+||||+|||.+|-.++... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56666779999999999999999998753 34677777644
No 399
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.35 E-value=0.00076 Score=63.67 Aligned_cols=71 Identities=24% Similarity=0.398 Sum_probs=49.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC----CcEEEEccc-hh---------hhhhhcchHHHHHHHHHHHHhCCCeEEEEc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGP-QL---------VQMFIGDGAKLVRDAFQLAKEKSPCIIFID 265 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~----~~~~~i~~s-~l---------~~~~~g~~~~~~~~~~~~a~~~~~~vl~iD 265 (418)
+=||++||+|+|||++.-++-.+.+ .+++.+-.+ +| ...-+|.........+..|.+..|.||++-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3489999999999999999988874 345555332 22 223455544445566777778899999999
Q ss_pred CCCcc
Q 039866 266 EIDAI 270 (418)
Q Consensus 266 Eid~l 270 (418)
|+-.+
T Consensus 206 EmRD~ 210 (353)
T COG2805 206 EMRDL 210 (353)
T ss_pred ccccH
Confidence 98643
No 400
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.35 E-value=0.0022 Score=57.37 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=39.5
Q ss_pred ceeecCCCCcHHHHHHHHHHH-----hCCcE--------------EEEccchhhhhhhcchHHHHHHHHHHHHh-CCCeE
Q 039866 202 VLLYGPPGTGKTLMARACAAQ-----TNATF--------------LKLAGPQLVQMFIGDGAKLVRDAFQLAKE-KSPCI 261 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~-----l~~~~--------------~~i~~s~l~~~~~g~~~~~~~~~~~~a~~-~~~~v 261 (418)
++|+||.|+|||++.|.++-. .|.++ ..+...+......+.......++...+.. ..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 689999999999999999842 23221 12222222222222233333333333322 36889
Q ss_pred EEEcCCCcc
Q 039866 262 IFIDEIDAI 270 (418)
Q Consensus 262 l~iDEid~l 270 (418)
+++||+..-
T Consensus 82 lllDEp~~g 90 (185)
T smart00534 82 VLLDELGRG 90 (185)
T ss_pred EEEecCCCC
Confidence 999998653
No 401
>PRK06547 hypothetical protein; Provisional
Probab=97.33 E-value=0.00017 Score=63.91 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++..+++.|++|+|||++|+.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34556889999999999999999999887766543
No 402
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.33 E-value=0.001 Score=58.81 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.8
Q ss_pred CCceeecCCCCcHHH-HHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTL-MARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~-lakala~~l 223 (418)
.++++.||+|||||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
No 403
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.33 E-value=0.00019 Score=64.51 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=28.3
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
++|+||||+|||++|+.||..++..+ ++..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHH
Confidence 79999999999999999999987655 445555443
No 404
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.32 E-value=0.00019 Score=61.28 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=27.4
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+.|.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999887665
No 405
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.32 E-value=0.00052 Score=67.24 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=48.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEc-cchhhh-h----------h--hcchHHHHHHHHHHHHhCCCeE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLA-GPQLVQ-M----------F--IGDGAKLVRDAFQLAKEKSPCI 261 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~-~s~l~~-~----------~--~g~~~~~~~~~~~~a~~~~~~v 261 (418)
...++++.||+|+|||++++++..... ..++.+. ..++.- . . .|...-....++..+.+..|.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 456899999999999999999999773 3343332 122211 0 0 0111223456788888899999
Q ss_pred EEEcCCC
Q 039866 262 IFIDEID 268 (418)
Q Consensus 262 l~iDEid 268 (418)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999995
No 406
>PRK06696 uridine kinase; Validated
Probab=97.32 E-value=0.00037 Score=64.39 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 236 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~ 236 (418)
.+.-|.+.|+||+||||+|+.|+..+ +.+++.+++.+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34458899999999999999999998 6678887776664
No 407
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.32 E-value=0.0014 Score=73.00 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=98.9
Q ss_pred CCCCCCCceeecCCCCcHHHH-HHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhC----------C-----
Q 039866 195 GVRPPKGVLLYGPPGTGKTLM-ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----------S----- 258 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~l-akala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~----------~----- 258 (418)
.+...++++++||||+|||++ +-++-.++-..++.+|-+.... ++..++. ++.-... +
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSV-LERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHH-HHhhceeeccCCeEEEccCcchh
Confidence 346778999999999999996 4466666666777777543321 1112211 1111111 1
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--------CCeEEEEEeCCCCCC-----ChhhhCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD--------DRIKVIAATNRADIL-----DPALMRSG 325 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--------~~vivI~ttn~~~~l-----~~~l~r~~ 325 (418)
-.|||.|||. |...+ ... ++.+.--+.+++. -.++.+. .++++.+++|++... ...++|
T Consensus 1564 ~lVLFcDeIn-Lp~~~-~y~---~~~vI~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGF-EYY---PPTVIVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred heEEEeeccC-Ccccc-ccC---CCceEEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 1499999998 43222 111 1222111223443 2344332 378899999987643 344544
Q ss_pred CceeEEEcCCCCHHHHHHHHHHHhhcCCCCC-------------CCCHHHH--------HHHcCCCcHHHHHHHHHHHHH
Q 039866 326 RLDRKIELPHPSEEARARILQIHSRKMTVHP-------------DVNFEEL--------ARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 326 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-------------~~~~~~l--------a~~~~g~s~~di~~l~~~A~~ 384 (418)
+ +..+....|.......|....+.+..+-. .+.+-.. ...-.||+|+++-..++....
T Consensus 1636 ~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1636 K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 2 24677778888888777776654322110 0111000 112257999999988876555
Q ss_pred HHHHh
Q 039866 385 LALRR 389 (418)
Q Consensus 385 ~A~~~ 389 (418)
+|..+
T Consensus 1715 yaeT~ 1719 (3164)
T COG5245 1715 YAETR 1719 (3164)
T ss_pred HHhcC
Confidence 55443
No 408
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.00025 Score=63.15 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=26.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
.++|.||||+||||+|+.|++.++ +..++...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 489999999999999999999954 455554433
No 409
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.0016 Score=59.75 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 250 AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 250 ~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
.+..|-...|.+|++||.-... +..+|..++.+|..+... .+.-+|+.|..
T Consensus 151 aIARAL~~~PklLIlDEptSaL----------D~siQa~IlnlL~~l~~~---~~lt~l~IsHd 201 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSAL----------DVSVQAQILNLLLELKKE---RGLTYLFISHD 201 (252)
T ss_pred HHHHHhccCCCEEEecCchhhh----------cHHHHHHHHHHHHHHHHh---cCceEEEEeCc
Confidence 3445555678899999986654 667888888888765432 34445666654
No 410
>PRK14530 adenylate kinase; Provisional
Probab=97.30 E-value=0.00021 Score=65.59 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.++|.||||+||||+|+.+|+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998766533
No 411
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.30 E-value=0.00075 Score=65.61 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccch
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQ 234 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~ 234 (418)
|++.+..++|+||||+|||++|-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666668999999999999999998763 34778887654
No 412
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.29 E-value=0.0016 Score=69.85 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++|+..+.+.|++|||||||+|.+....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566669999999999999999998843
No 413
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.28 E-value=0.00027 Score=62.55 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=30.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
...++|.||+|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4469999999999999999999999988876664
No 414
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0021 Score=56.82 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=61.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhh-------h----------hhhc--------ch-HHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLV-------Q----------MFIG--------DG-AKLVR 248 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~-------~----------~~~g--------~~-~~~~~ 248 (418)
.+...+.|.||+|+|||+|++.++.... .--+.++...+. . .+.+ -+ ....+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 4566799999999999999999998641 111122211100 0 0000 01 11122
Q ss_pred HHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 249 DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 249 ~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
-.+..+-...|.++++||-..-. +......+.+++..+.. .+. .+|.+|+.++
T Consensus 104 v~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~---~g~-tiii~th~~~ 156 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKK---EGK-TILLSSHILE 156 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---CCC-EEEEECCCHH
Confidence 34555556788999999986543 56677778888876532 123 3566666443
No 415
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.28 E-value=0.0028 Score=56.14 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++..-+++.||+|.|||++.|.+....
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 444458899999999999999998864
No 416
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.00039 Score=52.70 Aligned_cols=32 Identities=41% Similarity=0.510 Sum_probs=21.1
Q ss_pred CceeecCCCCcHH-HHHHHHHHHh------CCcEEEEcc
Q 039866 201 GVLLYGPPGTGKT-LMARACAAQT------NATFLKLAG 232 (418)
Q Consensus 201 ~vLl~Gp~GtGKT-~lakala~~l------~~~~~~i~~ 232 (418)
.+++.|||||||| ++++.++... +..++.+..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3666999999999 5555555554 344555543
No 417
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.27 E-value=0.00028 Score=67.18 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=45.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEcc-chhhhh------hh-cchHHHHHHHHHHHHhCCCeEEEEcCC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG-PQLVQM------FI-GDGAKLVRDAFQLAKEKSPCIIFIDEI 267 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~-s~l~~~------~~-g~~~~~~~~~~~~a~~~~~~vl~iDEi 267 (418)
.++++|.||+|+|||++++++...+. ..++.+.. .++.-. +. .........++..+.+..|.+|++.|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 45799999999999999999999873 34444432 222111 00 112223456777788889999999999
Q ss_pred Cc
Q 039866 268 DA 269 (418)
Q Consensus 268 d~ 269 (418)
-.
T Consensus 207 R~ 208 (270)
T PF00437_consen 207 RD 208 (270)
T ss_dssp -S
T ss_pred CC
Confidence 64
No 418
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.27 E-value=0.0017 Score=64.46 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..++|.||||+|||++++.+++..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 345569999999999999999999975
No 419
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.26 E-value=0.0018 Score=70.10 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=55.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---C--CcEEEEccchh----hhhhhcchHHHHHHHHHHHH----------hCCCe
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---N--ATFLKLAGPQL----VQMFIGDGAKLVRDAFQLAK----------EKSPC 260 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~--~~~~~i~~s~l----~~~~~g~~~~~~~~~~~~a~----------~~~~~ 260 (418)
+.+++.|+||||||++++++...+ + .+++.+..+.- +....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 368999999999999999997755 3 34443333211 11122322333333332210 12347
Q ss_pred EEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 261 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 261 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+|++||+..+ +. ..+..++..+ ....++++++-.+..
T Consensus 419 llIvDEaSMv-----------d~---~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 419 LLIVDESSMM-----------DT---WLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEEeccccC-----------CH---HHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999999988 32 2344555432 334566666655543
No 420
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.26 E-value=0.0008 Score=69.30 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=58.9
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCC-ceeecCCCCcHHHHHHHHHHHhC---CcEEEEcc-chh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKG-VLLYGPPGTGKTLMARACAAQTN---ATFLKLAG-PQL 235 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~-vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~-s~l 235 (418)
..++++++-.++.++.+...+ ..+.| ++++||+|+|||++.+++...++ ..++.+.. .++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~---------------~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLI---------------RRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHH---------------hcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 346777766666676666655 22334 78999999999999998877763 34555532 222
Q ss_pred hhhhhcc------hHHHHHHHHHHHHhCCCeEEEEcCCCc
Q 039866 236 VQMFIGD------GAKLVRDAFQLAKEKSPCIIFIDEIDA 269 (418)
Q Consensus 236 ~~~~~g~------~~~~~~~~~~~a~~~~~~vl~iDEid~ 269 (418)
.-..++. ...........+.+..|.||++.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 2111111 111233455666778999999999953
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.25 E-value=0.0023 Score=64.75 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=48.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhh-------h--------h--c--c-hHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM-------F--------I--G--D-GAKLVRDAFQL 253 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~-------~--------~--g--~-~~~~~~~~~~~ 253 (418)
+|..+++.||+|+|||+++..+|..+ +..+..++|..+... + . + . ...........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999998888764 566777776533210 0 0 1 1 12233445556
Q ss_pred HHhCCCeEEEEcCCCcc
Q 039866 254 AKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 254 a~~~~~~vl~iDEid~l 270 (418)
+....+.+|++|=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 66666789999988765
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.25 E-value=0.0021 Score=66.44 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHH----hCCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQ----TNATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~----l~~~~~~i~~s 233 (418)
|+++++.+|+.||||||||++|..++.. .+.+.+++...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6778888999999999999999998553 25677777653
No 423
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.23 E-value=0.0003 Score=61.97 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=28.1
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.|++|+|||++++.+|+.++.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999887554
No 424
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00026 Score=60.84 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.4
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
+-+.|||||||||+|+.+|+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998764
No 425
>PRK13946 shikimate kinase; Provisional
Probab=97.23 E-value=0.00026 Score=63.42 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
++.|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 357999999999999999999999999987666
No 426
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.23 E-value=0.0011 Score=64.57 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=43.5
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCC-CCCceeecCCCCcHHHHHHHHHHHhC-CcEEEEc
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRP-PKGVLLYGPPGTGKTLMARACAAQTN-ATFLKLA 231 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-~~~vLl~Gp~GtGKT~lakala~~l~-~~~~~i~ 231 (418)
++.|.++.+.++.+.+..+. .|... .+-++|.||+|+|||++++.+.+.+. .+++.+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA--------~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAA--------QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred cccCcHHHHHHHHHHHHHHH--------hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 78999999999999875432 23333 33488999999999999999998773 3455443
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.23 E-value=0.00095 Score=68.97 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhh------c----------------------ch
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI------G----------------------DG 243 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~------g----------------------~~ 243 (418)
|+++...+|+.||||||||+++-.++... +.+.+++...+-...+. | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67777789999999999999999998865 55667776543322110 0 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCccc
Q 039866 244 AKLVRDAFQLAKEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 244 ~~~~~~~~~~a~~~~~~vl~iDEid~l~ 271 (418)
...+..+.+.+....|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3445666777777888999999998774
No 428
>PLN02674 adenylate kinase
Probab=97.22 E-value=0.0003 Score=65.62 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=31.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
++..++|.||||+||||+|+.+|+.++. ..+++.+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHHH
Confidence 4456999999999999999999999875 55566666544
No 429
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.22 E-value=0.0013 Score=56.84 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=28.2
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
++|+|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 556677765444
No 430
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.22 E-value=0.0038 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.9
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-+.+|+++|+|||++|-.+|-..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37789999999999999998764
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.0028 Score=57.76 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
.++-++|+||+|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 335599999999999999999975
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.0024 Score=58.92 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCCCceeecCCCCcHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
+...++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999987
No 433
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.22 E-value=0.00083 Score=65.32 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=47.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEc-cchhhhh------hhcchHHHHHHHHHHHHhCCCeEEEEc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLA-GPQLVQM------FIGDGAKLVRDAFQLAKEKSPCIIFID 265 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~-~s~l~~~------~~g~~~~~~~~~~~~a~~~~~~vl~iD 265 (418)
...++|+.|++|+|||+++++++... +..++.+. ..++.-. +.....-....++..+.+..|..|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 34579999999999999999999875 23344433 2232211 001111224567777888999999999
Q ss_pred CCC
Q 039866 266 EID 268 (418)
Q Consensus 266 Eid 268 (418)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 984
No 434
>PTZ00035 Rad51 protein; Provisional
Probab=97.21 E-value=0.0012 Score=64.76 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchhhh-h----h---hcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLVQ-M----F---IGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l~~-~----~---~g~--------------- 242 (418)
|+++..-+.|+||||+|||+++..++... +..+++++....+. . . .|-
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56667778999999999999999987532 34566776543110 0 0 000
Q ss_pred -hHH---HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 243 -GAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 243 -~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
.+. .+..+........+.+|+||=|-.++.....+. ....+-+..+.+++..+.......++.|+.|
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 011 111122223345678999999988764322111 1112224445555554443333345555544
No 435
>PRK13764 ATPase; Provisional
Probab=97.20 E-value=0.00055 Score=71.66 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEc-cchhh-----hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA-GPQLV-----QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 268 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~-~s~l~-----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid 268 (418)
...++|++||||+||||++++++..+. ..+..+. ..++. ..+. ............+.+..|.++++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 356799999999999999999998873 3332332 12221 1110 000111223333356679999999985
Q ss_pred c
Q 039866 269 A 269 (418)
Q Consensus 269 ~ 269 (418)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 3
No 436
>PRK14528 adenylate kinase; Provisional
Probab=97.20 E-value=0.00029 Score=63.23 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=28.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
.+++.||||+|||++|+.++..++.+++. +.+++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~lr 37 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDILR 37 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHHH
Confidence 48999999999999999999999876644 444443
No 437
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.19 E-value=0.00085 Score=65.20 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=32.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+.++..++|.|+||+|||++++.+|..++.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 356778999999999999999999999999998544
No 438
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00027 Score=61.48 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++++|.||||||++|+.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8888776655
No 439
>PRK04040 adenylate kinase; Provisional
Probab=97.18 E-value=0.00033 Score=62.96 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
+..++++|+||+|||++++.+++.+...+-.++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 3468999999999999999999998322333444443
No 440
>PRK02496 adk adenylate kinase; Provisional
Probab=97.18 E-value=0.00033 Score=62.60 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=25.9
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.++|.||||+|||++|+.++..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999988765543
No 441
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.17 E-value=0.00058 Score=58.95 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=28.5
Q ss_pred eecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 204 LYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 204 l~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
|.||||+|||++|+.||...+. ..++..+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5667767666544
No 442
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.17 E-value=0.0019 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++..+++||.|+|||++.++++-.
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
No 443
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.17 E-value=0.0043 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+..-+.|.||+|||||||...++.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45556899999999999999999874
No 444
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.17 E-value=0.00036 Score=62.28 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=27.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
-++|.||||+||||+|+.++..++.. .++++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHH
Confidence 48899999999999999999998754 455545443
No 445
>PRK10436 hypothetical protein; Provisional
Probab=97.16 E-value=0.0012 Score=67.52 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=59.7
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEcc-chhhh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG-PQLVQ 237 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~-s~l~~ 237 (418)
.++++++-.+..++.+.+.+. .+.+.+|++||+|+||||+..++...++ ..++.+-- .++.-
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~--------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ--------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH--------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 467778666666666666552 2344599999999999999988877763 33444432 22211
Q ss_pred h-----hhcc-hHHHHHHHHHHHHhCCCeEEEEcCCCc
Q 039866 238 M-----FIGD-GAKLVRDAFQLAKEKSPCIIFIDEIDA 269 (418)
Q Consensus 238 ~-----~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~ 269 (418)
. .++. ........+..+.+..|.||++.|+-.
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1 1111 111244566677788999999999953
No 446
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.15 E-value=0.00068 Score=61.38 Aligned_cols=111 Identities=21% Similarity=0.370 Sum_probs=62.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccC
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 274 (418)
|......++|.|+-|+|||++++.|+.. ++.-+.... . ..... ..+..+ -++.+||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~-----~-~kd~~----~~l~~~--~iveldEl~~~~k-- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF-----D-DKDFL----EQLQGK--WIVELDELDGLSK-- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC-----C-CcHHH----HHHHHh--HheeHHHHhhcch--
Confidence 4455556889999999999999999655 111111100 0 01111 122222 3899999998742
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh-cCC---------CCCCCeEEEEEeCCCCCCC-hhhhCCCCceeEEEcCC
Q 039866 275 FDSEVSGDREVQRTMLELLNQL-DGF---------SSDDRIKVIAATNRADILD-PALMRSGRLDRKIELPH 335 (418)
Q Consensus 275 ~~~~~~~~~~~~~~l~~ll~~~-~~~---------~~~~~vivI~ttn~~~~l~-~~l~r~~Rf~~~i~~~~ 335 (418)
.-...+-.++..- +.. ..+...++|+|||..+.|. +.=-| || ..+.++.
T Consensus 110 ---------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 ---------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ---------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 2234555555431 111 1123677899999887553 33334 77 4555543
No 447
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.15 E-value=0.0037 Score=65.76 Aligned_cols=94 Identities=24% Similarity=0.299 Sum_probs=60.2
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEccc-hhhh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGP-QLVQ 237 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s-~l~~ 237 (418)
.++++++-....++.+.+.+. .+.+.+|++||+|+||||+..++.+.++ ..++.+--+ ++.-
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~--------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH--------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 467788766777777766552 2334589999999999999988888774 334444322 2211
Q ss_pred h-----hhc-chHHHHHHHHHHHHhCCCeEEEEcCCCc
Q 039866 238 M-----FIG-DGAKLVRDAFQLAKEKSPCIIFIDEIDA 269 (418)
Q Consensus 238 ~-----~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~ 269 (418)
. .+. .........+..+.+..|.||++.|+-.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 1 111 1111234566777788999999999963
No 448
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.15 E-value=0.00028 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.7
Q ss_pred ceeecCCCCcHHHHHHHHHHHh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l 223 (418)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999987
No 449
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.14 E-value=0.00036 Score=63.86 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=27.6
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
++|.||||+|||++|+.+|..++.+++ ++++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHHHH
Confidence 789999999999999999999886554 4444443
No 450
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.14 E-value=0.0014 Score=62.78 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=28.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----C-CcEEEEccch
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----N-ATFLKLAGPQ 234 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~-~~~~~i~~s~ 234 (418)
.+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35569999999999999999998865 3 4566666544
No 451
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00063 Score=63.58 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=57.9
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccch-------------------------hhhhhhcchHHHH-
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQ-------------------------LVQMFIGDGAKLV- 247 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s~-------------------------l~~~~~g~~~~~~- 247 (418)
+.....+-|.|++||||||++|.+...... --+.+++.+ +..+|..+..+..
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 345667999999999999999999986521 112222111 1111222222222
Q ss_pred -HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc
Q 039866 248 -RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 297 (418)
Q Consensus 248 -~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 297 (418)
+-.+..|....|.+++.||.-.+. +-.++..++.+|..+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq 156 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQ 156 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHH
Confidence 234455556789999999998765 5567777777776654
No 452
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.13 E-value=0.0023 Score=56.98 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=28.1
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
+.|+|++|+|||++++.+++ +|.++ +++.++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~~~~ 37 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIAHEVY 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHHHhhh
Confidence 67999999999999999998 67654 55556655443
No 453
>PRK14527 adenylate kinase; Provisional
Probab=97.12 E-value=0.00034 Score=62.99 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=28.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
.+.-++++||||+|||++|+.++..++...+ +..+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i--s~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL--STGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC--CccHHH
Confidence 4456999999999999999999999876543 444444
No 454
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0034 Score=61.96 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh----h----
Q 039866 170 LEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----M---- 238 (418)
Q Consensus 170 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~----~---- 238 (418)
.+.+...+.+.+...+..+..+ .+.++..++|.||+|+|||+++..+|..+ +..+..+++..+.. .
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHH
Confidence 4556666666665444332222 23456679999999999999999999866 44555555533211 1
Q ss_pred --------hhcchHHHHHHHHHHHHh-CCCeEEEEcCCCcc
Q 039866 239 --------FIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAI 270 (418)
Q Consensus 239 --------~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l 270 (418)
+.......+......++. ....+|+||=....
T Consensus 257 ae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 257 ADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred hhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 111223333444444432 33568888887664
No 455
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.12 E-value=0.00041 Score=63.71 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=28.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
.++++||||+|||++|+.+|..++.+++. +.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999865554 444443
No 456
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.11 E-value=0.00067 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.5
Q ss_pred ceeecCCCCcHHHHHHHHHHHh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l 223 (418)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 457
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.11 E-value=0.0012 Score=64.34 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=47.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEc-cchhhh---hh---hcchHHHHHHHHHHHHhCCCeEEEEc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLA-GPQLVQ---MF---IGDGAKLVRDAFQLAKEKSPCIIFID 265 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~-~s~l~~---~~---~g~~~~~~~~~~~~a~~~~~~vl~iD 265 (418)
...++++.||+|+|||+++++++... ...++.+. ..++.- .+ .....-....++..+.+..|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45689999999999999999999863 22333332 222210 01 01111234567788888999999999
Q ss_pred CCC
Q 039866 266 EID 268 (418)
Q Consensus 266 Eid 268 (418)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 995
No 458
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.11 E-value=0.0011 Score=64.56 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=30.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccch
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQ 234 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~ 234 (418)
|+++..-+.++||||+|||+++..++... +..+++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 56666678999999999999999987532 13567777644
No 459
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0045 Score=61.01 Aligned_cols=111 Identities=14% Similarity=0.257 Sum_probs=59.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCC-----cEEE--Ecc-----chhhhhh---hc-----chH-HHHH---HHHHH--
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNA-----TFLK--LAG-----PQLVQMF---IG-----DGA-KLVR---DAFQL-- 253 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~-----~~~~--i~~-----s~l~~~~---~g-----~~~-~~~~---~~~~~-- 253 (418)
...+|+||||||||++++.+++.+.. .++. |.- .++.... ++ ... ..++ .+.+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999997632 1222 221 1222221 11 111 1111 11122
Q ss_pred --HHhCCCeEEEEcCCCcccccCCC-------C-CCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 254 --AKEKSPCIIFIDEIDAIGTKRFD-------S-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 254 --a~~~~~~vl~iDEid~l~~~~~~-------~-~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
.......+|++|++.+++..... - ..+-++.+...+-.++..-......+.+-+|+|
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~T 280 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIAT 280 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEE
Confidence 22345579999999987542211 0 012355666667777776544443444444444
No 460
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.09 E-value=0.00088 Score=66.38 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 461
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0068 Score=54.65 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||+|+|||+|++.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566679999999999999999999864
No 462
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.07 E-value=0.0031 Score=68.52 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=42.8
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh----hcchHHHHHHHHHHHH-----hCCCeEEEEcCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF----IGDGAKLVRDAFQLAK-----EKSPCIIFIDEI 267 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~----~g~~~~~~~~~~~~a~-----~~~~~vl~iDEi 267 (418)
+-++|.|+||||||++++++...+ +..++.+..+...... .|.....+..+..... .....+|++||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 458899999999999999997654 5556655443332221 1222222223221111 123479999999
Q ss_pred Ccc
Q 039866 268 DAI 270 (418)
Q Consensus 268 d~l 270 (418)
..+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 887
No 463
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.002 Score=67.47 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++|+..+-|.||+|+|||++|..+-+.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4577888999999999999999999874
No 464
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.0078 Score=61.01 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccch
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQ 234 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~ 234 (418)
+++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 34568999999999999999887654 34566666654
No 465
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.06 E-value=0.004 Score=64.85 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhhhhcc----------------------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFIGD---------------------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~~~g~---------------------------- 242 (418)
|+++...+|++|+||||||+++..++... +.++++++..+-...+...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred --------hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 243 --------GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 243 --------~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
....+..+...+....+..++||-+..+...-.. .......+..++..+.. .++.+|++++..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~-----~~~~r~~l~~L~~~Lk~----~g~TvLlt~~~~ 177 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSN-----EAVVRRELRRLFAWLKQ----KGVTAVITGERG 177 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccC-----HHHHHHHHHHHHHHHHh----CCCEEEEEECCc
Q ss_pred C
Q 039866 315 D 315 (418)
Q Consensus 315 ~ 315 (418)
.
T Consensus 178 ~ 178 (509)
T PRK09302 178 D 178 (509)
T ss_pred c
No 466
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.04 E-value=0.0018 Score=60.83 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.8
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
++|+|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 456677765444
No 467
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.04 E-value=0.00087 Score=77.03 Aligned_cols=129 Identities=23% Similarity=0.324 Sum_probs=83.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh--hhhc--------chHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ--MFIG--------DGAKLVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~--~~~g--------~~~~~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
.+||.||+|+|||.+++.+|+..+..+++++-.+... .|+| ...-.-..+...++.. +.+++||++..
T Consensus 442 pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G--~~~vlD~lnla 519 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG--DWIVLDELNLA 519 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC--CEEEecccccc
Confidence 6999999999999999999999999999998654322 2332 1111122344455444 59999999987
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhcCC---------CCCCCeEEEEEeCCCC------CCChhhhCCCCceeEEEcCC
Q 039866 271 GTKRFDSEVSGDREVQRTMLELLNQLDGF---------SSDDRIKVIAATNRAD------ILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---------~~~~~vivI~ttn~~~------~l~~~l~r~~Rf~~~i~~~~ 335 (418)
+.++...|.++++.-..+ ....+.++++|-|++. .+..++++ ||. .++|-.
T Consensus 520 -----------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--rf~-e~~f~~ 585 (1856)
T KOG1808|consen 520 -----------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN--RFI-ELHFDD 585 (1856)
T ss_pred -----------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc--cch-hhhhhh
Confidence 567888899998762221 2233566778888774 34566666 664 344443
Q ss_pred CCHHHHHHHH
Q 039866 336 PSEEARARIL 345 (418)
Q Consensus 336 p~~~~r~~il 345 (418)
-..++...|+
T Consensus 586 ~~e~e~~~i~ 595 (1856)
T KOG1808|consen 586 IGEEELEEIL 595 (1856)
T ss_pred cCchhhhhhh
Confidence 3334333333
No 468
>PF13479 AAA_24: AAA domain
Probab=97.04 E-value=0.00082 Score=61.69 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=38.0
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh---hhhh------hcchHHHHHHHHHHH--HhCCCeEEEEcCCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL---VQMF------IGDGAKLVRDAFQLA--KEKSPCIIFIDEID 268 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l---~~~~------~g~~~~~~~~~~~~a--~~~~~~vl~iDEid 268 (418)
..++||||||+|||++|..+ +. .+.+++..= ...+ .=.+-..+...+..+ ....+.+|+||.++
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k-~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PK-PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CC-eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 46999999999999999888 22 233333211 1110 001222333444332 23467899999887
Q ss_pred cc
Q 039866 269 AI 270 (418)
Q Consensus 269 ~l 270 (418)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 469
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.03 E-value=0.0017 Score=62.70 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=26.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
-+++.|||||||||+|+.+++.+. .++.++...+.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 478899999999999999999983 23445544443
No 470
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0012 Score=61.49 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 248 RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 248 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
+-++..|-...|.+++|||--.-. +...+..++++|..+..- ++.|++.|.+..
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gv----------D~~~~~~i~~lL~~l~~e----g~tIl~vtHDL~ 200 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGV----------DVAGQKEIYDLLKELRQE----GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccC----------CHHHHHHHHHHHHHHHHC----CCEEEEEeCCcH
Confidence 345666667788999999964322 666778889999887532 445667776554
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.03 E-value=0.00071 Score=65.74 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=47.1
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEcc-chhhhh---h---------hcchHHHHHHHHHHHHhCCCe
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAG-PQLVQM---F---------IGDGAKLVRDAFQLAKEKSPC 260 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~-s~l~~~---~---------~g~~~~~~~~~~~~a~~~~~~ 260 (418)
+....++++.||+|+|||+++++++..+. ...+.+.. .++.-. . .+...-....++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 35667899999999999999999998763 22333321 121100 0 011112244567777788899
Q ss_pred EEEEcCCC
Q 039866 261 IIFIDEID 268 (418)
Q Consensus 261 vl~iDEid 268 (418)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999995
No 472
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.03 E-value=0.0052 Score=55.42 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||+|+|||+|.+.++...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566679999999999999999999865
No 473
>PRK08233 hypothetical protein; Provisional
Probab=97.03 E-value=0.00065 Score=60.26 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=25.9
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC-CcEEEEcc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN-ATFLKLAG 232 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~-~~~~~i~~ 232 (418)
-+.|.|+||+||||+|+.++..++ .+++..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 477899999999999999999985 45555544
No 474
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0057 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+...+.|.||+|+|||+|++.++..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45667899999999999999999963
No 475
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.02 E-value=0.0016 Score=63.86 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=64.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchh---------hhhh-------hc--------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL---------VQMF-------IG-------- 241 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l---------~~~~-------~g-------- 241 (418)
|+.+..-+.++|+||+|||.+|..+|-.. +..+++++..+- ...+ ..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 56666678999999999999999887432 236778876541 1000 00
Q ss_pred chHH---HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 242 DGAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 242 ~~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
..+. .+..+........+.+|+||=+-.++.....+. ......+..|.+++..+..+....++.||.|..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 0011 111122223455688999999988865321111 111123344556665554444445566665543
No 476
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.02 E-value=0.051 Score=56.05 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=85.9
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCH
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSE 338 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~ 338 (418)
|+|++|.++|.++. ++.+.+.|..+...... ..+.+||.+.+ ..+++.|.+ +-.++.+|.|+.
T Consensus 82 ~~~~vl~d~h~~~~---------~~~~~r~l~~l~~~~~~---~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLN---------DISISRKLRNLSRILKT---QPKTIIIIASE--LNIPKELKD---LITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhc---------chHHHHHHHHHHHHHHh---CCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCH
Confidence 68999999999973 44566666666554433 34455655543 457777764 556889999999
Q ss_pred HHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 339 EARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 339 ~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+++..+++......... ++.+++.++..+.|+|..+++.++..+... ...++.+++...+
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-----~~~~~~~~~~~i~ 205 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT-----YKTIDENSIPLIL 205 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cCCCChhhHHHHH
Confidence 99999998877644333 445678899999999999999998764321 2346666654443
No 477
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.006 Score=56.35 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+.+.++|+||.|+|||++.+.++.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 3445899999999999999998753
No 478
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.01 E-value=0.0052 Score=65.08 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+|||||++.++...
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4566779999999999999999999864
No 479
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.01 E-value=0.0006 Score=66.97 Aligned_cols=72 Identities=25% Similarity=0.378 Sum_probs=47.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEcc-chhhhh--------h----hcchHHHHHHHHHHHHhCCCeE
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAG-PQLVQM--------F----IGDGAKLVRDAFQLAKEKSPCI 261 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~-s~l~~~--------~----~g~~~~~~~~~~~~a~~~~~~v 261 (418)
....++++.||+|+||||++++++.... ..++.+.. .++.-. + .|...-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 4567899999999999999999998763 23333321 222100 0 0111122446777888889999
Q ss_pred EEEcCCC
Q 039866 262 IFIDEID 268 (418)
Q Consensus 262 l~iDEid 268 (418)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999985
No 480
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.01 E-value=0.01 Score=51.50 Aligned_cols=132 Identities=14% Similarity=0.200 Sum_probs=73.8
Q ss_pred ecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHH
Q 039866 205 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDRE 284 (418)
Q Consensus 205 ~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 284 (418)
.+.+||||||++.+|++.++. +-.+.-.++..+ .....+....+........++|.|-=.... .
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~------------r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK------------R 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH------------H
Confidence 478999999999999999872 233333344332 344555666666644445688888655442 1
Q ss_pred HHHHHHHHHHhhcC--CCCCCCeEEEEEeCCCCCCCh--------hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC
Q 039866 285 VQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDP--------ALMRSGRLDRKIELPHPSEEARARILQIHSRKM 352 (418)
Q Consensus 285 ~~~~l~~ll~~~~~--~~~~~~vivI~ttn~~~~l~~--------~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 352 (418)
-...+...+..... .....++.+|+-.=..+.-.+ .++.+|-=...|.....+...-..|+..++..+
T Consensus 69 eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 69 ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 22344444444322 222345656655432222112 222312222366666667777777888777654
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.99 E-value=0.00065 Score=57.25 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=25.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
++...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455568999999999999999999998754
No 482
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.99 E-value=0.00078 Score=61.85 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=17.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-.++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999998777666554
No 483
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.00077 Score=59.72 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEcc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG 232 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~ 232 (418)
.++..++|.|+||+|||++|+.++..+. ...+.++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3556799999999999999999999884 23455544
No 484
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.97 E-value=0.012 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-.+|+||.|+|||.+..|++-.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999997765
No 485
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.97 E-value=0.0018 Score=58.69 Aligned_cols=23 Identities=48% Similarity=0.690 Sum_probs=18.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-+.+.||.|||||++|-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998765
No 486
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0076 Score=53.50 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=60.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccchh---------hhh-----------hhc----------ch-
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQL---------VQM-----------FIG----------DG- 243 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s~l---------~~~-----------~~g----------~~- 243 (418)
.+...+.|.||+|+|||+|+++++..... --+.++...+ ... +.+ -+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 45566889999999999999999975421 1122211100 000 000 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 244 AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 244 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
....+-.+..+-...|.++++||--.-. +...+..+.+++..+.. .....+|.+|+.++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~L----------D~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSAL----------DPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 1112234455556778899999986533 66677778888876532 11234556665443
No 487
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.95 E-value=0.002 Score=62.98 Aligned_cols=39 Identities=28% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
..+.|.|+||+|||+|++.+++.++.+++.-...++...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~ 201 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEE 201 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHH
Confidence 469999999999999999999999988876666555543
No 488
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.95 E-value=0.0013 Score=65.19 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=43.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC------CcEEEEcc-chhhhh------------hhcchHHHHHHHHHHHHhCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN------ATFLKLAG-PQLVQM------------FIGDGAKLVRDAFQLAKEKS 258 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~------~~~~~i~~-s~l~~~------------~~g~~~~~~~~~~~~a~~~~ 258 (418)
+...++++||+|+||||+++++++.+. ..++.+.. .++... .++............+.+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 344599999999999999999998762 23433322 122110 01111112334445566778
Q ss_pred CeEEEEcCCC
Q 039866 259 PCIIFIDEID 268 (418)
Q Consensus 259 ~~vl~iDEid 268 (418)
|.++++.|+.
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999975
No 489
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.03 Score=55.20 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=34.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHcCCCcHHHHHHHHH
Q 039866 330 KIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 330 ~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~g~s~~di~~l~~ 380 (418)
.|+++.++.+|-..++..+++.--+. .+....++--.+ +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 58888999999999998877643222 233455555555 456788888873
No 490
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.95 E-value=0.0019 Score=58.56 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=31.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-CCcEEEEccchhhhh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQLVQM 238 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~s~l~~~ 238 (418)
.|.-+++.|+||+|||+++..+...+ ...++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 45568899999999999999999988 778889988766443
No 491
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.94 E-value=0.0045 Score=58.76 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=55.8
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHH
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAK 245 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~ 245 (418)
+++-.+++++.|..... .+. .|.++.||.|.+|+||+++++..|.-.+..++.+..+.-.+ ..+...
T Consensus 9 ~lVlf~~ai~hi~ri~R-vL~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISR-VLS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp -----HHHHHHHHHHHH-HHC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred ceeeHHHHHHHHHHHHH-HHc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 45556777777665432 111 35567999999999999999999998899998888653211 122233
Q ss_pred HHHHHHHHHH-hCCCeEEEEcCCCc
Q 039866 246 LVRDAFQLAK-EKSPCIIFIDEIDA 269 (418)
Q Consensus 246 ~~~~~~~~a~-~~~~~vl~iDEid~ 269 (418)
.++.++..+- .+.|.+++|+|-+-
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHHhccCCCeEEEecCccc
Confidence 4555555444 45578888888654
No 492
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.034 Score=51.47 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=98.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE-cc-chhhhhhhc--chHHHHHHHHHHHHhC---CC-e-EE--EEc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL-AG-PQLVQMFIG--DGAKLVRDAFQLAKEK---SP-C-II--FID 265 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i-~~-s~l~~~~~g--~~~~~~~~~~~~a~~~---~~-~-vl--~iD 265 (418)
..|.-+||=|+||+|||++|.-+|+.+|...+.- +. .+++.+.++ ..+......|..-+.. .. . |+ |.|
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 3456688999999999999999999998754322 21 234444443 1111122222222211 10 0 11 223
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHH
Q 039866 266 EIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL 345 (418)
Q Consensus 266 Eid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il 345 (418)
.+... ...+...+.+.+.+. .++++=+.-=-|..+++..+...-| .+.+-.++.+.-+.-|
T Consensus 167 qa~~V-----------~~GI~~VI~RAi~eG------~~lIIEGvHlVPg~i~~~~~~~n~~--~~~l~i~dee~Hr~RF 227 (299)
T COG2074 167 QASAV-----------MVGIEAVIERAIEEG------EDLIIEGVHLVPGLIKEEALGNNVF--MFMLYIADEELHRERF 227 (299)
T ss_pred HhHHH-----------HHHHHHHHHHHHhcC------cceEEEeeeeccccccHhhhccceE--EEEEEeCCHHHHHHHH
Confidence 32222 122233333333332 2343333333466777666532223 4455566766655544
Q ss_pred HHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 346 QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 346 ~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
-...+....+. .....+.. -.+++.+-.-....|...+-+.|..+|+.++.+++..
T Consensus 228 ~~R~~~t~~~r--p~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 228 YDRIRYTHASR--PGGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILE 283 (299)
T ss_pred HHHHHHHhccC--chhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHH
Confidence 44443321111 11222222 1367777777888888889999999999999988876
No 493
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.94 E-value=0.0041 Score=65.97 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++++..+.|.||+|+||||+++.++...
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34677779999999999999999998864
No 494
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.93 E-value=0.0038 Score=55.95 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=28.5
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 240 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~ 240 (418)
+.|+|++|||||++++.++...+.++ +++.++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~--i~~D~~~~~~~ 38 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPV--IDADKIAHQVV 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EeCCHHHHHHH
Confidence 67999999999999999999865555 56555554433
No 495
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.93 E-value=0.0049 Score=68.29 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=42.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhh----cchHHHHHHHHHHHH-----hCCCeEEEEcCCC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI----GDGAKLVRDAFQLAK-----EKSPCIIFIDEID 268 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~----g~~~~~~~~~~~~a~-----~~~~~vl~iDEid 268 (418)
-++|.|++|||||++.+++...+ +..++-+..+.....-. |-....+..++.... .....||+|||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 47899999999999998876543 55565555443322222 222333444332111 1234699999998
Q ss_pred cc
Q 039866 269 AI 270 (418)
Q Consensus 269 ~l 270 (418)
.+
T Consensus 444 Mv 445 (988)
T PRK13889 444 MV 445 (988)
T ss_pred cC
Confidence 87
No 496
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.92 E-value=0.0012 Score=62.57 Aligned_cols=39 Identities=33% Similarity=0.496 Sum_probs=32.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
|++..+.+|++|+||||||.++..++... +.+++.+...
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 56777789999999999999999998765 6677777653
No 497
>PLN02459 probable adenylate kinase
Probab=96.92 E-value=0.0016 Score=61.22 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..++|.||||+|||++|+.+|..++.. .+++.+++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdllR 65 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDLVR 65 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHHHH
Confidence 348889999999999999999998754 455555543
No 498
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0078 Score=54.66 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.1
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||+|+|||+|++.++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3566679999999999999999999864
No 499
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.91 E-value=0.011 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
-+.|+||+|+|||+++++++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999754
No 500
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.91 E-value=0.002 Score=64.73 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
.+.|.|.|++|||||||+++||..++..++.--+.++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 34699999999999999999999988876554444444
Done!