Query 039866
Match_columns 418
No_of_seqs 435 out of 3481
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 5.4E-64 1.8E-68 493.8 44.0 369 22-411 21-394 (405)
2 4b4t_M 26S protease regulatory 100.0 2E-64 6.8E-69 504.1 34.7 402 17-418 23-434 (434)
3 4b4t_I 26S protease regulatory 100.0 8.6E-62 2.9E-66 479.1 37.6 354 37-411 70-428 (437)
4 4b4t_K 26S protease regulatory 100.0 4E-61 1.4E-65 480.0 41.0 376 21-417 44-427 (428)
5 4b4t_L 26S protease subunit RP 100.0 5.9E-60 2E-64 472.2 40.6 354 37-411 69-427 (437)
6 4b4t_H 26S protease regulatory 100.0 9.5E-57 3.3E-61 447.3 37.3 306 104-409 143-453 (467)
7 3cf2_A TER ATPase, transitiona 100.0 8.2E-45 2.8E-49 386.2 11.4 255 157-411 469-748 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.3E-42 7.9E-47 367.4 17.9 250 158-410 197-463 (806)
9 3h4m_A Proteasome-activating n 100.0 1.6E-38 5.6E-43 303.2 28.2 260 153-412 5-264 (285)
10 3cf0_A Transitional endoplasmi 100.0 1.7E-39 5.8E-44 313.1 19.4 254 157-410 7-285 (301)
11 2ce7_A Cell division protein F 100.0 2.2E-37 7.4E-42 313.6 26.7 249 159-408 10-258 (476)
12 2x8a_A Nuclear valosin-contain 100.0 8.5E-38 2.9E-42 297.0 20.1 249 159-410 4-268 (274)
13 1lv7_A FTSH; alpha/beta domain 100.0 1.2E-36 4.1E-41 286.3 27.6 249 158-407 5-253 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.9E-37 2.7E-41 297.0 23.3 248 158-411 5-304 (322)
15 3eie_A Vacuolar protein sortin 100.0 7.2E-37 2.5E-41 297.5 19.7 250 156-410 9-302 (322)
16 3hu3_A Transitional endoplasmi 100.0 1E-35 3.5E-40 303.6 24.6 249 160-411 199-464 (489)
17 2qp9_X Vacuolar protein sortin 100.0 5.5E-36 1.9E-40 294.9 21.6 249 157-411 43-336 (355)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 5.8E-36 2E-40 281.6 20.5 250 160-410 1-253 (262)
19 2dhr_A FTSH; AAA+ protein, hex 100.0 4.3E-35 1.5E-39 298.4 23.1 248 160-408 26-273 (499)
20 1ixz_A ATP-dependent metallopr 100.0 9E-34 3.1E-38 266.2 26.4 245 158-403 9-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 9E-35 3.1E-39 294.4 19.1 249 156-410 125-425 (444)
22 1iy2_A ATP-dependent metallopr 100.0 1.9E-32 6.7E-37 260.7 27.9 245 158-403 33-277 (278)
23 3b9p_A CG5977-PA, isoform A; A 100.0 1.6E-33 5.6E-38 270.2 19.9 250 156-408 12-274 (297)
24 2r62_A Cell division protease 100.0 5E-36 1.7E-40 283.6 1.6 252 159-411 5-258 (268)
25 3d8b_A Fidgetin-like protein 1 100.0 3.4E-33 1.2E-37 275.3 21.4 256 150-411 69-339 (357)
26 3vfd_A Spastin; ATPase, microt 100.0 3.8E-32 1.3E-36 270.9 23.3 252 153-408 103-367 (389)
27 1ypw_A Transitional endoplasmi 100.0 5.4E-35 1.8E-39 315.3 -3.3 253 157-409 469-746 (806)
28 1ypw_A Transitional endoplasmi 100.0 2.1E-28 7.2E-33 264.0 24.5 248 158-408 197-461 (806)
29 3t15_A Ribulose bisphosphate c 99.9 1.2E-26 4.2E-31 222.3 11.9 178 194-377 31-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 4.9E-23 1.7E-27 198.1 18.3 223 165-400 31-280 (309)
31 3uk6_A RUVB-like 2; hexameric 99.9 1.4E-22 4.8E-27 199.7 19.3 220 160-406 39-330 (368)
32 3pfi_A Holliday junction ATP-d 99.9 1.5E-21 5E-26 190.3 24.5 219 159-407 23-255 (338)
33 2c9o_A RUVB-like 1; hexameric 99.9 2E-22 6.7E-27 204.7 17.1 233 160-408 32-439 (456)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 3E-21 1E-25 186.7 21.0 217 159-406 6-238 (324)
35 1qvr_A CLPB protein; coiled co 99.9 2.5E-23 8.4E-28 226.6 1.3 339 13-389 417-822 (854)
36 2v1u_A Cell division control p 99.8 7.5E-20 2.6E-24 180.5 23.2 225 163-409 17-279 (387)
37 1ofh_A ATP-dependent HSL prote 99.8 6.8E-21 2.3E-25 182.7 15.2 240 165-406 15-299 (310)
38 3m6a_A ATP-dependent protease 99.8 2E-21 6.9E-26 201.1 9.0 226 162-405 78-340 (543)
39 2chg_A Replication factor C sm 99.8 4.5E-19 1.5E-23 160.8 22.6 202 159-404 11-224 (226)
40 3hws_A ATP-dependent CLP prote 99.8 5E-20 1.7E-24 181.5 16.2 234 166-401 16-344 (363)
41 1g8p_A Magnesium-chelatase 38 99.8 3.5E-19 1.2E-23 174.0 21.3 224 159-411 18-327 (350)
42 2r44_A Uncharacterized protein 99.8 1E-19 3.4E-24 176.9 16.2 219 162-409 24-300 (331)
43 1d2n_A N-ethylmaleimide-sensit 99.8 6.4E-20 2.2E-24 173.5 14.4 207 164-383 32-246 (272)
44 3pxi_A Negative regulator of g 99.8 7.1E-20 2.4E-24 197.1 15.4 199 164-387 490-725 (758)
45 3pvs_A Replication-associated 99.8 1.9E-19 6.5E-24 181.7 17.5 206 159-406 20-244 (447)
46 4fcw_A Chaperone protein CLPB; 99.8 2.6E-19 9E-24 172.0 15.8 207 164-387 16-279 (311)
47 1r6b_X CLPA protein; AAA+, N-t 99.8 2.3E-19 7.7E-24 193.3 16.5 199 165-386 458-715 (758)
48 2z4s_A Chromosomal replication 99.8 1E-18 3.6E-23 176.3 19.2 220 160-407 100-333 (440)
49 2qby_B CDC6 homolog 3, cell di 99.8 8.7E-19 3E-23 173.2 17.8 213 165-408 20-272 (384)
50 1njg_A DNA polymerase III subu 99.8 5.3E-18 1.8E-22 155.5 21.1 203 159-403 17-248 (250)
51 1l8q_A Chromosomal replication 99.8 1.7E-18 5.8E-23 167.8 18.4 219 160-407 6-241 (324)
52 3u61_B DNA polymerase accessor 99.8 9.7E-19 3.3E-23 169.4 16.5 204 158-405 19-236 (324)
53 1in4_A RUVB, holliday junction 99.8 2.2E-17 7.6E-22 160.8 24.8 219 159-407 19-251 (334)
54 1um8_A ATP-dependent CLP prote 99.8 1.3E-18 4.4E-23 172.2 15.8 237 165-403 21-362 (376)
55 2qby_A CDC6 homolog 1, cell di 99.8 6.1E-18 2.1E-22 166.6 20.3 224 162-408 17-274 (386)
56 1g41_A Heat shock protein HSLU 99.8 6E-20 2.1E-24 183.5 5.5 169 165-345 15-188 (444)
57 3te6_A Regulatory protein SIR3 99.8 6.3E-19 2.2E-23 169.3 11.7 214 167-407 22-316 (318)
58 1sxj_D Activator 1 41 kDa subu 99.8 8.9E-18 3E-22 164.0 19.9 208 158-404 30-261 (353)
59 1sxj_A Activator 1 95 kDa subu 99.8 2.6E-18 8.7E-23 177.0 15.2 228 156-406 30-274 (516)
60 3bos_A Putative DNA replicatio 99.8 9.7E-18 3.3E-22 154.3 17.4 206 160-404 23-241 (242)
61 1jbk_A CLPB protein; beta barr 99.8 1.6E-18 5.6E-23 153.3 11.7 159 161-345 18-194 (195)
62 1fnn_A CDC6P, cell division co 99.8 1.7E-17 5.9E-22 164.0 20.0 222 163-407 15-275 (389)
63 1r6b_X CLPA protein; AAA+, N-t 99.8 4.3E-18 1.5E-22 183.3 16.6 221 161-406 182-433 (758)
64 3pxg_A Negative regulator of g 99.8 2.9E-18 1E-22 174.4 14.1 208 160-408 175-408 (468)
65 2bjv_A PSP operon transcriptio 99.7 9.3E-18 3.2E-22 157.8 14.4 209 162-400 3-251 (265)
66 1sxj_B Activator 1 37 kDa subu 99.7 8.3E-17 2.8E-21 155.0 21.1 202 159-404 15-229 (323)
67 2chq_A Replication factor C sm 99.7 2.5E-17 8.5E-22 158.3 15.9 206 158-403 10-223 (319)
68 1jr3_A DNA polymerase III subu 99.7 1.2E-16 4E-21 157.3 19.1 202 160-403 11-241 (373)
69 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 8E-18 2.7E-22 171.5 11.0 206 165-400 22-280 (500)
70 1iqp_A RFCS; clamp loader, ext 99.7 1.7E-16 5.8E-21 153.0 19.6 191 158-383 18-216 (327)
71 3pxi_A Negative regulator of g 99.7 3.4E-17 1.1E-21 176.3 15.7 205 160-405 175-405 (758)
72 2p65_A Hypothetical protein PF 99.7 2.5E-17 8.4E-22 145.3 11.4 152 161-337 18-187 (187)
73 1ojl_A Transcriptional regulat 99.7 1.9E-17 6.4E-22 159.1 11.1 206 165-400 2-246 (304)
74 1qvr_A CLPB protein; coiled co 99.7 9.5E-17 3.2E-21 174.8 17.7 204 160-389 165-395 (854)
75 3f9v_A Minichromosome maintena 99.7 1.2E-17 4.2E-22 174.2 9.5 227 164-409 294-590 (595)
76 1sxj_E Activator 1 40 kDa subu 99.7 1E-15 3.4E-20 149.8 18.7 193 157-386 6-244 (354)
77 1sxj_C Activator 1 40 kDa subu 99.7 1.9E-15 6.4E-20 147.4 17.6 207 158-403 18-236 (340)
78 3co5_A Putative two-component 99.6 2E-16 6.9E-21 134.8 6.5 132 166-336 5-142 (143)
79 3n70_A Transport activator; si 99.6 5.2E-16 1.8E-20 132.5 8.9 132 166-336 2-144 (145)
80 3k1j_A LON protease, ATP-depen 99.6 1.4E-15 4.9E-20 159.3 13.0 221 157-405 33-374 (604)
81 1w5s_A Origin recognition comp 99.5 2.5E-13 8.6E-18 135.1 20.2 230 163-407 20-294 (412)
82 1a5t_A Delta prime, HOLB; zinc 99.5 6.9E-13 2.4E-17 128.9 19.1 171 170-379 7-205 (334)
83 2gno_A DNA polymerase III, gam 99.5 5E-13 1.7E-17 128.1 13.9 142 169-349 1-152 (305)
84 1ny5_A Transcriptional regulat 99.4 3.4E-13 1.2E-17 133.8 11.9 272 102-403 71-384 (387)
85 3kw6_A 26S protease regulatory 99.4 1.1E-12 3.8E-17 99.5 9.0 77 334-410 1-77 (78)
86 3f8t_A Predicted ATPase involv 99.4 1.4E-11 4.9E-16 122.5 18.3 219 167-411 215-488 (506)
87 3cmw_A Protein RECA, recombina 99.4 5.6E-13 1.9E-17 151.0 8.4 153 160-313 1015-1217(1706)
88 2krk_A 26S protease regulatory 99.4 1.5E-12 5E-17 100.6 8.0 78 333-410 8-85 (86)
89 3dzd_A Transcriptional regulat 99.3 4.1E-12 1.4E-16 125.0 11.1 253 102-386 71-361 (368)
90 3aji_B S6C, proteasome (prosom 99.3 5E-12 1.7E-16 97.0 6.8 83 336-418 1-83 (83)
91 3ec2_A DNA replication protein 99.3 9E-12 3.1E-16 109.8 9.3 135 160-315 5-144 (180)
92 4akg_A Glutathione S-transfera 99.3 5.7E-11 2E-15 140.1 16.9 141 198-352 1266-1434(2695)
93 3vlf_B 26S protease regulatory 99.2 1.4E-11 4.9E-16 95.5 7.9 73 337-409 2-74 (88)
94 2fna_A Conserved hypothetical 99.2 1.9E-09 6.6E-14 104.3 20.8 187 160-380 8-251 (357)
95 2qen_A Walker-type ATPase; unk 99.1 3.8E-09 1.3E-13 102.0 19.9 191 160-380 7-247 (350)
96 2w58_A DNAI, primosome compone 99.1 1.2E-10 4E-15 104.4 6.0 102 161-270 21-127 (202)
97 2dzn_B 26S protease regulatory 99.1 4.8E-11 1.6E-15 91.3 2.7 80 339-418 1-82 (82)
98 2kjq_A DNAA-related protein; s 99.0 3E-10 1E-14 97.2 7.1 105 198-333 35-145 (149)
99 4akg_A Glutathione S-transfera 98.9 2.6E-08 8.8E-13 117.9 19.1 184 199-407 645-858 (2695)
100 2qgz_A Helicase loader, putati 98.9 1E-09 3.5E-14 105.2 5.9 70 199-270 152-226 (308)
101 2vhj_A Ntpase P4, P4; non- hyd 98.9 2.6E-10 9E-15 108.7 1.7 120 196-320 120-241 (331)
102 2r2a_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 93.9 6.3 127 201-339 7-156 (199)
103 2wg5_A General control protein 98.8 3.5E-08 1.2E-12 79.1 10.4 95 42-157 9-108 (109)
104 1tue_A Replication protein E1; 98.7 1E-08 3.5E-13 91.3 5.9 113 196-335 55-178 (212)
105 3vkg_A Dynein heavy chain, cyt 98.7 1.4E-07 4.7E-12 112.5 14.5 140 198-351 1303-1471(3245)
106 1jr3_D DNA polymerase III, del 98.6 3.9E-07 1.3E-11 88.3 14.5 175 198-406 17-209 (343)
107 3cmu_A Protein RECA, recombina 98.6 1.1E-07 3.7E-12 109.5 9.4 79 195-273 1423-1520(2050)
108 3vkg_A Dynein heavy chain, cyt 98.5 6.7E-07 2.3E-11 106.7 15.0 125 201-346 606-750 (3245)
109 1svm_A Large T antigen; AAA+ f 98.5 7.9E-08 2.7E-12 94.4 4.8 119 195-335 165-284 (377)
110 1u0j_A DNA replication protein 98.4 3.7E-07 1.3E-11 84.9 7.7 118 199-346 104-248 (267)
111 1ye8_A Protein THEP1, hypothet 98.4 1.2E-06 4.2E-11 76.8 10.7 26 201-226 2-27 (178)
112 3m9b_A Proteasome-associated A 98.3 5.8E-06 2E-10 74.6 11.9 99 27-147 55-157 (251)
113 1xp8_A RECA protein, recombina 98.1 5.7E-06 2E-10 80.8 9.4 78 195-272 70-166 (366)
114 2w0m_A SSO2452; RECA, SSPF, un 98.1 7.9E-06 2.7E-10 73.8 9.3 38 195-232 19-59 (235)
115 3hr8_A Protein RECA; alpha and 98.1 2.9E-06 9.8E-11 82.5 6.7 78 195-272 57-153 (356)
116 3h43_A Proteasome-activating n 98.1 9.6E-06 3.3E-10 61.6 8.1 71 54-145 2-77 (85)
117 2zr9_A Protein RECA, recombina 98.1 2.1E-06 7.3E-11 83.4 5.1 78 195-272 57-153 (349)
118 1z6t_A APAF-1, apoptotic prote 98.1 5.7E-05 2E-09 78.3 15.3 170 164-372 123-322 (591)
119 1n0w_A DNA repair protein RAD5 98.0 7.6E-06 2.6E-10 74.6 6.5 78 195-272 20-133 (243)
120 1u94_A RECA protein, recombina 98.0 6.2E-06 2.1E-10 80.3 6.0 78 195-272 59-155 (356)
121 2cvh_A DNA repair and recombin 98.0 7.4E-06 2.5E-10 73.5 5.8 40 195-234 16-55 (220)
122 2ehv_A Hypothetical protein PH 97.9 2.5E-05 8.6E-10 71.4 9.0 114 195-317 26-185 (251)
123 1g41_A Heat shock protein HSLU 97.9 2.7E-05 9.3E-10 77.7 9.2 159 244-407 238-434 (444)
124 2r8r_A Sensor protein; KDPD, P 97.9 0.00034 1.2E-08 63.2 15.6 161 201-387 8-209 (228)
125 3sfz_A APAF-1, apoptotic pepti 97.9 0.00011 3.9E-09 82.3 15.4 170 163-372 122-322 (1249)
126 1qhx_A CPT, protein (chloramph 97.9 2.3E-05 7.8E-10 67.9 7.5 36 200-235 4-39 (178)
127 2z43_A DNA repair and recombin 97.9 1.2E-05 4.1E-10 77.3 6.2 78 195-272 103-217 (324)
128 3upu_A ATP-dependent DNA helic 97.9 2.1E-05 7.2E-10 79.3 7.5 50 160-223 19-69 (459)
129 1v5w_A DMC1, meiotic recombina 97.8 1.6E-05 5.5E-10 77.1 6.1 78 195-272 118-233 (343)
130 2orw_A Thymidine kinase; TMTK, 97.8 6.7E-06 2.3E-10 72.4 2.8 30 201-230 5-37 (184)
131 3io5_A Recombination and repai 97.8 2.4E-05 8.4E-10 74.2 6.6 78 195-273 25-126 (333)
132 2dr3_A UPF0273 protein PH0284; 97.8 9.1E-05 3.1E-09 67.4 10.2 38 195-232 19-59 (247)
133 3cmu_A Protein RECA, recombina 97.8 2.7E-05 9.2E-10 89.9 7.2 80 195-274 1077-1175(2050)
134 2b8t_A Thymidine kinase; deoxy 97.8 6.1E-05 2.1E-09 68.3 8.0 69 201-270 14-101 (223)
135 3lda_A DNA repair protein RAD5 97.7 3.2E-05 1.1E-09 76.4 6.2 79 195-273 174-288 (400)
136 2iut_A DNA translocase FTSK; n 97.7 0.00043 1.5E-08 70.9 14.4 75 259-346 344-420 (574)
137 3vaa_A Shikimate kinase, SK; s 97.7 1.9E-05 6.3E-10 70.2 3.6 35 197-231 23-57 (199)
138 4a74_A DNA repair and recombin 97.7 2.5E-05 8.5E-10 70.5 4.4 29 195-223 21-49 (231)
139 1pzn_A RAD51, DNA repair and r 97.7 3.8E-05 1.3E-09 74.6 5.9 39 195-233 127-174 (349)
140 3trf_A Shikimate kinase, SK; a 97.7 2.1E-05 7E-10 68.7 3.5 33 199-231 5-37 (185)
141 3jvv_A Twitching mobility prot 97.7 8.7E-05 3E-09 72.1 8.1 71 198-268 122-206 (356)
142 2a5y_B CED-4; apoptosis; HET: 97.6 0.00043 1.5E-08 71.3 13.5 166 168-371 131-330 (549)
143 2rhm_A Putative kinase; P-loop 97.6 2.3E-05 7.8E-10 68.8 3.2 34 197-230 3-36 (193)
144 2i1q_A DNA repair and recombin 97.6 4.1E-05 1.4E-09 73.4 4.5 78 195-272 94-218 (322)
145 3iij_A Coilin-interacting nucl 97.6 4.7E-05 1.6E-09 66.2 4.5 33 198-230 10-42 (180)
146 2p5t_B PEZT; postsegregational 97.6 0.00017 5.8E-09 66.5 8.1 39 197-235 30-68 (253)
147 3e1s_A Exodeoxyribonuclease V, 97.5 6.3E-05 2.1E-09 77.9 5.0 33 200-232 205-240 (574)
148 3kb2_A SPBC2 prophage-derived 97.5 6.2E-05 2.1E-09 64.6 3.9 31 201-231 3-33 (173)
149 1zp6_A Hypothetical protein AT 97.5 4.3E-05 1.5E-09 67.0 2.9 40 196-235 6-45 (191)
150 2iyv_A Shikimate kinase, SK; t 97.5 6.1E-05 2.1E-09 65.7 3.9 31 201-231 4-34 (184)
151 1y63_A LMAJ004144AAA protein; 97.5 5.4E-05 1.8E-09 66.3 3.3 32 199-230 10-42 (184)
152 1via_A Shikimate kinase; struc 97.5 6.6E-05 2.2E-09 65.0 3.8 29 201-229 6-34 (175)
153 1kag_A SKI, shikimate kinase I 97.5 8.4E-05 2.9E-09 63.9 4.4 31 199-229 4-34 (173)
154 1nlf_A Regulatory protein REPA 97.5 0.00011 3.8E-09 68.7 5.5 29 195-223 26-54 (279)
155 2r6a_A DNAB helicase, replicat 97.4 0.0002 6.9E-09 72.0 7.2 38 195-232 199-240 (454)
156 1zuh_A Shikimate kinase; alpha 97.4 8.1E-05 2.8E-09 63.9 3.3 31 200-230 8-38 (168)
157 2zts_A Putative uncharacterize 97.4 0.00043 1.5E-08 62.9 8.4 38 195-232 26-67 (251)
158 2cdn_A Adenylate kinase; phosp 97.4 9.5E-05 3.2E-09 65.5 3.7 31 200-230 21-51 (201)
159 1gvn_B Zeta; postsegregational 97.4 0.00015 5.1E-09 68.4 5.3 38 198-235 32-69 (287)
160 2c95_A Adenylate kinase 1; tra 97.4 9.1E-05 3.1E-09 65.0 3.4 34 198-231 8-41 (196)
161 2ius_A DNA translocase FTSK; n 97.3 0.00071 2.4E-08 68.6 10.2 75 260-347 299-375 (512)
162 3dm5_A SRP54, signal recogniti 97.3 0.00029 9.9E-09 70.2 7.2 73 198-270 99-194 (443)
163 2ze6_A Isopentenyl transferase 97.3 0.00011 3.9E-09 67.8 4.0 32 201-232 3-34 (253)
164 1g5t_A COB(I)alamin adenosyltr 97.3 0.0011 3.8E-08 58.5 10.2 115 200-333 29-177 (196)
165 3t61_A Gluconokinase; PSI-biol 97.3 0.00014 4.9E-09 64.4 4.5 33 199-231 18-50 (202)
166 1aky_A Adenylate kinase; ATP:A 97.3 0.0001 3.5E-09 66.3 3.6 33 198-230 3-35 (220)
167 3cmw_A Protein RECA, recombina 97.3 0.00023 7.8E-09 81.4 7.0 116 197-312 1429-1566(1706)
168 1e6c_A Shikimate kinase; phosp 97.3 0.00013 4.4E-09 62.7 3.9 30 201-230 4-33 (173)
169 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00033 1.1E-08 64.8 7.0 37 200-236 5-44 (260)
170 3lw7_A Adenylate kinase relate 97.3 0.0001 3.6E-09 63.0 3.3 29 201-230 3-31 (179)
171 1tev_A UMP-CMP kinase; ploop, 97.3 9.1E-05 3.1E-09 64.8 2.9 30 200-229 4-33 (196)
172 3kl4_A SRP54, signal recogniti 97.3 0.00091 3.1E-08 66.5 10.3 196 199-408 97-342 (433)
173 2eyu_A Twitching motility prot 97.3 0.00015 5.1E-09 67.4 4.3 72 197-268 23-108 (261)
174 2q6t_A DNAB replication FORK h 97.3 0.00039 1.3E-08 69.6 7.7 38 195-232 196-237 (444)
175 1zd8_A GTP:AMP phosphotransfer 97.3 0.0001 3.5E-09 66.7 3.0 33 198-230 6-38 (227)
176 2fz4_A DNA repair protein RAD2 97.3 0.00067 2.3E-08 61.9 8.2 33 201-233 110-142 (237)
177 2i3b_A HCR-ntpase, human cance 97.3 0.00026 8.9E-09 62.4 5.1 23 201-223 3-25 (189)
178 1kht_A Adenylate kinase; phosp 97.2 0.00011 3.9E-09 64.0 2.7 25 200-224 4-28 (192)
179 2bwj_A Adenylate kinase 5; pho 97.2 0.00014 4.6E-09 64.0 3.1 32 199-230 12-43 (199)
180 3bh0_A DNAB-like replicative h 97.2 0.00065 2.2E-08 64.8 8.1 38 195-232 64-104 (315)
181 2pt5_A Shikimate kinase, SK; a 97.2 0.00017 5.7E-09 61.7 3.6 30 201-230 2-31 (168)
182 3dl0_A Adenylate kinase; phosp 97.2 0.00015 5.2E-09 64.9 3.4 29 202-230 3-31 (216)
183 3cm0_A Adenylate kinase; ATP-b 97.2 0.00018 6.1E-09 62.6 3.8 29 200-228 5-33 (186)
184 3umf_A Adenylate kinase; rossm 97.2 0.00017 5.7E-09 65.1 3.6 40 197-238 27-66 (217)
185 3fb4_A Adenylate kinase; psych 97.2 0.00016 5.5E-09 64.7 3.5 29 202-230 3-31 (216)
186 1zak_A Adenylate kinase; ATP:A 97.2 0.00012 4.2E-09 65.9 2.7 31 198-228 4-34 (222)
187 3be4_A Adenylate kinase; malar 97.2 0.00013 4.3E-09 65.7 2.8 31 200-230 6-36 (217)
188 3tlx_A Adenylate kinase 2; str 97.2 0.00014 4.8E-09 66.7 3.1 33 198-230 28-60 (243)
189 2vli_A Antibiotic resistance p 97.2 0.00012 4.2E-09 63.4 2.6 30 199-228 5-34 (183)
190 1qf9_A UMP/CMP kinase, protein 97.2 0.00017 5.6E-09 63.0 3.3 31 200-230 7-37 (194)
191 1ak2_A Adenylate kinase isoenz 97.2 0.00019 6.4E-09 65.3 3.7 32 199-230 16-47 (233)
192 1vma_A Cell division protein F 97.2 0.00062 2.1E-08 64.7 7.4 73 197-269 102-197 (306)
193 1knq_A Gluconate kinase; ALFA/ 97.2 0.00018 6.3E-09 62.0 3.4 31 199-229 8-38 (175)
194 4eun_A Thermoresistant glucoki 97.2 0.00022 7.6E-09 63.2 3.9 31 198-228 28-58 (200)
195 1ly1_A Polynucleotide kinase; 97.2 0.00013 4.4E-09 63.0 2.2 31 201-233 4-35 (181)
196 1ukz_A Uridylate kinase; trans 97.2 0.00017 5.9E-09 63.8 3.0 31 201-231 17-47 (203)
197 2ewv_A Twitching motility prot 97.1 0.00019 6.4E-09 70.3 3.4 73 196-268 133-219 (372)
198 3sr0_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 62.8 4.0 34 202-237 3-36 (206)
199 2pez_A Bifunctional 3'-phospho 97.1 0.00031 1.1E-08 60.9 3.9 36 198-233 4-42 (179)
200 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00013 4.3E-09 70.5 1.3 29 201-229 26-54 (359)
201 1nks_A Adenylate kinase; therm 97.1 0.00027 9.2E-09 61.6 3.2 35 201-235 3-40 (194)
202 3uie_A Adenylyl-sulfate kinase 97.0 0.00033 1.1E-08 62.0 3.7 39 197-235 23-64 (200)
203 1e4v_A Adenylate kinase; trans 97.0 0.0003 1E-08 63.0 3.3 29 202-230 3-31 (214)
204 4g1u_C Hemin import ATP-bindin 97.0 0.0015 5E-08 60.8 7.9 27 197-223 35-61 (266)
205 2pbr_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 60.1 4.3 30 202-231 3-35 (195)
206 2v54_A DTMP kinase, thymidylat 97.0 0.00042 1.4E-08 61.1 3.7 34 199-232 4-38 (204)
207 1vt4_I APAF-1 related killer D 97.0 0.0037 1.3E-07 68.2 11.5 43 168-222 131-173 (1221)
208 2jaq_A Deoxyguanosine kinase; 97.0 0.00046 1.6E-08 60.7 3.8 28 202-229 3-30 (205)
209 3crm_A TRNA delta(2)-isopenten 97.0 0.00043 1.5E-08 66.1 3.8 33 200-232 6-38 (323)
210 1cke_A CK, MSSA, protein (cyti 97.0 0.00052 1.8E-08 61.7 4.2 29 200-228 6-34 (227)
211 2xb4_A Adenylate kinase; ATP-b 97.0 0.00041 1.4E-08 62.6 3.5 29 202-230 3-31 (223)
212 3nwj_A ATSK2; P loop, shikimat 96.9 0.00038 1.3E-08 64.2 3.2 33 199-231 48-80 (250)
213 2if2_A Dephospho-COA kinase; a 96.9 0.00039 1.3E-08 61.5 3.1 30 201-231 3-32 (204)
214 1tf7_A KAIC; homohexamer, hexa 96.9 0.0028 9.6E-08 64.8 9.6 110 195-314 277-417 (525)
215 2z0h_A DTMP kinase, thymidylat 96.9 0.00066 2.3E-08 59.4 4.2 30 202-231 3-35 (197)
216 4gp7_A Metallophosphoesterase; 96.9 0.00043 1.5E-08 59.8 2.9 21 198-218 8-28 (171)
217 2qor_A Guanylate kinase; phosp 96.9 0.00064 2.2E-08 60.3 3.9 28 197-224 10-37 (204)
218 3gfo_A Cobalt import ATP-bindi 96.8 0.0022 7.5E-08 59.9 7.6 27 197-223 32-58 (275)
219 3r20_A Cytidylate kinase; stru 96.8 0.00064 2.2E-08 61.9 3.7 31 199-229 9-39 (233)
220 2grj_A Dephospho-COA kinase; T 96.8 0.00062 2.1E-08 60.1 3.4 36 201-238 14-49 (192)
221 3b6e_A Interferon-induced heli 96.8 0.014 4.8E-07 51.3 12.3 24 200-223 49-72 (216)
222 3bgw_A DNAB-like replicative h 96.8 0.0043 1.5E-07 62.0 9.7 38 195-232 193-233 (444)
223 1w36_D RECD, exodeoxyribonucle 96.8 0.0021 7.3E-08 66.9 7.8 24 200-223 165-188 (608)
224 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00055 1.9E-08 65.8 3.1 72 198-269 170-251 (330)
225 3ake_A Cytidylate kinase; CMP 96.8 0.00076 2.6E-08 59.5 3.8 31 201-231 4-34 (208)
226 2plr_A DTMP kinase, probable t 96.8 0.00082 2.8E-08 59.5 4.0 27 200-226 5-31 (213)
227 2xau_A PRE-mRNA-splicing facto 96.8 0.0034 1.1E-07 67.3 9.3 61 160-222 70-132 (773)
228 2bbw_A Adenylate kinase 4, AK4 96.8 0.00076 2.6E-08 61.7 3.8 31 198-228 26-56 (246)
229 2px0_A Flagellar biosynthesis 96.8 0.0037 1.3E-07 59.0 8.6 36 198-233 104-143 (296)
230 2wwf_A Thymidilate kinase, put 96.8 0.0003 1E-08 62.5 0.9 28 198-225 9-36 (212)
231 1jjv_A Dephospho-COA kinase; P 96.8 0.00065 2.2E-08 60.2 3.1 27 201-228 4-30 (206)
232 1t6n_A Probable ATP-dependent 96.8 0.036 1.2E-06 49.2 14.7 24 199-222 51-74 (220)
233 2yvu_A Probable adenylyl-sulfa 96.8 0.0009 3.1E-08 58.3 4.0 37 198-234 12-51 (186)
234 3tui_C Methionine import ATP-b 96.8 0.003 1E-07 61.2 8.0 27 197-223 52-78 (366)
235 1uj2_A Uridine-cytidine kinase 96.8 0.00082 2.8E-08 61.8 3.9 39 199-237 22-68 (252)
236 3a8t_A Adenylate isopentenyltr 96.7 0.00047 1.6E-08 66.1 2.2 34 200-233 41-74 (339)
237 1xx6_A Thymidine kinase; NESG, 96.7 0.0028 9.5E-08 55.8 7.0 68 201-270 10-93 (191)
238 1vpl_A ABC transporter, ATP-bi 96.7 0.0056 1.9E-07 56.5 9.3 27 197-223 39-65 (256)
239 1q57_A DNA primase/helicase; d 96.7 0.0026 8.8E-08 64.7 7.7 38 195-232 238-279 (503)
240 1kgd_A CASK, peripheral plasma 96.7 0.00075 2.6E-08 58.6 3.2 26 199-224 5-30 (180)
241 3thx_B DNA mismatch repair pro 96.7 0.0045 1.5E-07 67.2 9.8 24 198-221 672-695 (918)
242 1nn5_A Similar to deoxythymidy 96.7 0.00035 1.2E-08 62.2 0.9 27 198-224 8-34 (215)
243 1ex7_A Guanylate kinase; subst 96.7 0.0012 4E-08 58.0 4.3 27 200-226 2-28 (186)
244 3rlf_A Maltose/maltodextrin im 96.7 0.0024 8.3E-08 62.3 6.9 27 197-223 27-53 (381)
245 2gxq_A Heat resistant RNA depe 96.7 0.0097 3.3E-07 52.2 10.4 20 199-218 38-57 (207)
246 1uf9_A TT1252 protein; P-loop, 96.7 0.00067 2.3E-08 59.7 2.7 36 199-237 8-43 (203)
247 4e22_A Cytidylate kinase; P-lo 96.7 0.001 3.5E-08 61.2 3.9 30 199-228 27-56 (252)
248 1tf7_A KAIC; homohexamer, hexa 96.7 0.0049 1.7E-07 62.9 9.4 112 196-316 36-187 (525)
249 2j41_A Guanylate kinase; GMP, 96.7 0.00072 2.5E-08 59.7 2.7 27 197-223 4-30 (207)
250 3foz_A TRNA delta(2)-isopenten 96.7 0.00081 2.8E-08 63.6 3.1 34 199-232 10-43 (316)
251 3tau_A Guanylate kinase, GMP k 96.6 0.00085 2.9E-08 59.8 2.8 27 198-224 7-33 (208)
252 1rz3_A Hypothetical protein rb 96.6 0.0028 9.5E-08 56.0 6.2 36 198-233 21-59 (201)
253 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.3E-08 58.9 3.9 31 200-230 4-34 (219)
254 2qt1_A Nicotinamide riboside k 96.6 0.00064 2.2E-08 60.3 1.9 31 199-229 21-52 (207)
255 1vht_A Dephospho-COA kinase; s 96.6 0.00096 3.3E-08 59.7 3.0 30 200-230 5-34 (218)
256 2v3c_C SRP54, signal recogniti 96.6 0.0031 1.1E-07 62.8 7.0 36 198-233 98-136 (432)
257 3exa_A TRNA delta(2)-isopenten 96.6 0.0034 1.2E-07 59.5 6.8 32 201-232 5-36 (322)
258 1lvg_A Guanylate kinase, GMP k 96.6 0.0011 3.9E-08 58.6 3.3 27 198-224 3-29 (198)
259 2yhs_A FTSY, cell division pro 96.6 0.012 4.2E-07 59.1 11.1 74 197-270 291-387 (503)
260 1m7g_A Adenylylsulfate kinase; 96.6 0.0011 3.7E-08 59.2 3.0 39 197-235 23-65 (211)
261 3llm_A ATP-dependent RNA helic 96.6 0.0078 2.7E-07 54.4 8.9 22 199-220 76-97 (235)
262 1q3t_A Cytidylate kinase; nucl 96.5 0.0015 5.1E-08 59.3 4.0 32 198-229 15-46 (236)
263 3d3q_A TRNA delta(2)-isopenten 96.5 0.0013 4.3E-08 63.3 3.3 31 201-231 9-39 (340)
264 3nh6_A ATP-binding cassette SU 96.5 0.0054 1.9E-07 58.1 7.7 28 196-223 77-104 (306)
265 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 58.0 3.1 27 198-224 6-32 (205)
266 2oap_1 GSPE-2, type II secreti 96.5 0.0018 6.3E-08 65.9 4.6 71 198-268 259-343 (511)
267 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.8E-08 56.6 3.8 32 201-233 4-35 (189)
268 1w4r_A Thymidine kinase; type 96.4 0.0019 6.6E-08 56.8 3.8 68 201-270 22-103 (195)
269 2f6r_A COA synthase, bifunctio 96.4 0.0012 4.3E-08 61.7 2.7 32 201-235 77-108 (281)
270 3a00_A Guanylate kinase, GMP k 96.4 0.0016 5.6E-08 56.7 3.3 25 200-224 2-26 (186)
271 1qde_A EIF4A, translation init 96.4 0.029 9.9E-07 49.9 11.6 18 199-216 51-68 (224)
272 1z6g_A Guanylate kinase; struc 96.4 0.0019 6.4E-08 58.1 3.5 28 196-223 20-47 (218)
273 2qmh_A HPR kinase/phosphorylas 96.3 0.0013 4.4E-08 58.2 2.1 33 199-232 34-66 (205)
274 3eph_A TRNA isopentenyltransfe 96.3 0.0015 5.1E-08 64.1 2.7 32 200-231 3-34 (409)
275 1ltq_A Polynucleotide kinase; 96.3 0.0011 3.7E-08 62.4 1.7 33 201-235 4-37 (301)
276 1zu4_A FTSY; GTPase, signal re 96.3 0.0059 2E-07 58.3 6.8 36 197-232 103-141 (320)
277 3c8u_A Fructokinase; YP_612366 96.3 0.0014 4.7E-08 58.4 2.2 27 198-224 21-47 (208)
278 2pl3_A Probable ATP-dependent 96.3 0.015 5E-07 52.4 9.2 19 199-217 62-80 (236)
279 4etp_A Kinesin-like protein KA 96.3 0.033 1.1E-06 54.7 12.2 57 22-78 13-69 (403)
280 3asz_A Uridine kinase; cytidin 96.3 0.0015 5.1E-08 58.0 2.3 27 198-224 5-31 (211)
281 3thx_A DNA mismatch repair pro 96.3 0.014 4.8E-07 63.5 10.1 22 200-221 663-684 (934)
282 3u06_A Protein claret segregat 96.2 0.023 7.9E-07 55.9 10.8 45 24-68 15-59 (412)
283 1cr0_A DNA primase/helicase; R 96.2 0.003 1E-07 59.3 4.4 37 195-231 31-71 (296)
284 3ney_A 55 kDa erythrocyte memb 96.2 0.003 1E-07 55.8 4.1 26 199-224 19-44 (197)
285 1htw_A HI0065; nucleotide-bind 96.2 0.0022 7.4E-08 54.7 2.9 28 196-223 30-57 (158)
286 3zvl_A Bifunctional polynucleo 96.2 0.0014 4.7E-08 65.1 1.8 30 199-228 258-287 (416)
287 3fdi_A Uncharacterized protein 96.2 0.0028 9.6E-08 56.2 3.6 28 201-228 8-35 (201)
288 4b3f_X DNA-binding protein smu 96.2 0.0044 1.5E-07 65.0 5.6 31 201-231 207-240 (646)
289 2j9r_A Thymidine kinase; TK1, 96.2 0.011 3.9E-07 52.7 7.5 30 202-231 31-63 (214)
290 3e70_C DPA, signal recognition 96.1 0.0066 2.2E-07 58.1 6.2 27 197-223 127-153 (328)
291 1p9r_A General secretion pathw 96.1 0.0092 3.2E-07 59.1 7.4 70 199-268 167-246 (418)
292 2v9p_A Replication protein E1; 96.1 0.0026 9E-08 60.2 3.3 33 195-227 122-154 (305)
293 1ls1_A Signal recognition part 96.1 0.037 1.3E-06 52.0 11.2 73 198-270 97-192 (295)
294 1vec_A ATP-dependent RNA helic 96.1 0.029 1E-06 49.1 10.0 19 199-217 40-58 (206)
295 2axn_A 6-phosphofructo-2-kinas 96.1 0.0094 3.2E-07 60.8 7.5 37 200-236 36-75 (520)
296 1znw_A Guanylate kinase, GMP k 96.1 0.0027 9.1E-08 56.4 3.0 28 197-224 18-45 (207)
297 1s96_A Guanylate kinase, GMP k 96.1 0.0028 9.5E-08 57.1 3.1 28 197-224 14-41 (219)
298 2xxa_A Signal recognition part 96.1 0.015 5E-07 57.9 8.5 73 198-270 99-195 (433)
299 2va8_A SSO2462, SKI2-type heli 96.0 0.029 1E-06 59.3 11.2 24 197-220 44-67 (715)
300 3iuy_A Probable ATP-dependent 96.0 0.015 5.3E-07 51.9 7.8 20 199-218 57-76 (228)
301 3qf4_B Uncharacterized ABC tra 96.0 0.021 7.1E-07 59.3 9.8 28 196-223 378-405 (598)
302 2jeo_A Uridine-cytidine kinase 95.9 0.0031 1.1E-07 57.5 2.8 30 197-226 23-52 (245)
303 1j8m_F SRP54, signal recogniti 95.9 0.0095 3.3E-07 56.2 6.2 72 199-270 98-192 (297)
304 1c9k_A COBU, adenosylcobinamid 95.9 0.0035 1.2E-07 54.6 2.9 32 202-234 2-33 (180)
305 1q0u_A Bstdead; DEAD protein, 95.9 0.011 3.7E-07 52.6 6.3 19 200-218 42-60 (219)
306 3gmt_A Adenylate kinase; ssgci 95.9 0.0046 1.6E-07 56.0 3.7 35 201-237 10-44 (230)
307 3b9q_A Chloroplast SRP recepto 95.9 0.0042 1.4E-07 58.8 3.6 27 197-223 98-124 (302)
308 2ffh_A Protein (FFH); SRP54, s 95.9 0.021 7.3E-07 56.5 8.7 73 198-270 97-192 (425)
309 4a82_A Cystic fibrosis transme 95.9 0.013 4.4E-07 60.6 7.4 28 196-223 364-391 (578)
310 3b5x_A Lipid A export ATP-bind 95.9 0.042 1.4E-06 56.8 11.2 28 196-223 366-393 (582)
311 4f4c_A Multidrug resistance pr 95.8 0.015 5.1E-07 66.0 8.2 28 196-223 441-468 (1321)
312 2j37_W Signal recognition part 95.8 0.01 3.4E-07 60.2 6.1 73 198-270 100-195 (504)
313 1hv8_A Putative ATP-dependent 95.8 0.028 9.6E-07 53.6 9.1 23 200-222 45-67 (367)
314 2og2_A Putative signal recogni 95.8 0.0072 2.5E-07 58.5 4.8 27 197-223 155-181 (359)
315 1gtv_A TMK, thymidylate kinase 95.8 0.002 6.8E-08 57.1 0.8 23 202-224 3-25 (214)
316 3lnc_A Guanylate kinase, GMP k 95.8 0.0021 7.3E-08 58.0 1.0 27 197-223 25-52 (231)
317 1wb9_A DNA mismatch repair pro 95.8 0.038 1.3E-06 59.2 10.7 23 200-222 608-630 (800)
318 1x6v_B Bifunctional 3'-phospho 95.7 0.0054 1.9E-07 63.7 3.8 35 199-233 52-89 (630)
319 2v6i_A RNA helicase; membrane, 95.7 0.031 1.1E-06 55.5 9.2 21 200-220 3-24 (431)
320 3ber_A Probable ATP-dependent 95.7 0.037 1.3E-06 50.4 9.2 19 199-217 80-98 (249)
321 1a7j_A Phosphoribulokinase; tr 95.7 0.0034 1.2E-07 59.0 2.1 36 201-236 7-45 (290)
322 4eaq_A DTMP kinase, thymidylat 95.7 0.005 1.7E-07 55.7 3.0 32 199-230 26-59 (229)
323 3qf4_A ABC transporter, ATP-bi 95.7 0.029 9.9E-07 58.0 9.1 28 196-223 366-393 (587)
324 1odf_A YGR205W, hypothetical 3 95.7 0.011 3.7E-07 55.6 5.3 27 198-224 30-56 (290)
325 3hdt_A Putative kinase; struct 95.6 0.0066 2.3E-07 54.8 3.5 29 201-229 16-44 (223)
326 3ozx_A RNAse L inhibitor; ATP 95.6 0.021 7.1E-07 58.5 7.5 22 202-223 28-49 (538)
327 2zj8_A DNA helicase, putative 95.6 0.033 1.1E-06 59.0 9.4 20 198-217 38-57 (720)
328 3j16_B RLI1P; ribosome recycli 95.6 0.027 9.1E-07 58.5 8.2 26 198-223 102-127 (608)
329 1s2m_A Putative ATP-dependent 95.5 0.032 1.1E-06 54.1 8.4 21 200-220 59-79 (400)
330 4a1f_A DNAB helicase, replicat 95.5 0.0091 3.1E-07 57.3 4.3 38 195-232 42-82 (338)
331 3tqc_A Pantothenate kinase; bi 95.5 0.016 5.4E-07 55.2 5.9 25 200-224 93-117 (321)
332 1np6_A Molybdopterin-guanine d 95.5 0.0075 2.6E-07 52.2 3.1 25 199-223 6-30 (174)
333 2z0m_A 337AA long hypothetical 95.4 0.031 1E-06 52.6 7.6 33 200-232 32-64 (337)
334 4f4c_A Multidrug resistance pr 95.4 0.032 1.1E-06 63.2 8.9 28 196-223 1102-1129(1321)
335 3aez_A Pantothenate kinase; tr 95.4 0.0067 2.3E-07 57.7 2.9 27 197-223 88-114 (312)
336 3tbk_A RIG-I helicase domain; 95.4 0.18 6E-06 51.0 13.6 33 200-232 20-60 (555)
337 2i4i_A ATP-dependent RNA helic 95.3 0.08 2.8E-06 51.5 10.6 18 199-216 52-69 (417)
338 3tif_A Uncharacterized ABC tra 95.3 0.0054 1.9E-07 55.8 1.9 27 197-223 29-55 (235)
339 1rj9_A FTSY, signal recognitio 95.3 0.0078 2.7E-07 57.0 3.1 26 198-223 101-126 (304)
340 3p32_A Probable GTPase RV1496/ 95.3 0.033 1.1E-06 53.8 7.5 33 199-231 79-114 (355)
341 1xti_A Probable ATP-dependent 95.3 0.26 9E-06 47.2 14.1 23 199-221 45-67 (391)
342 1sq5_A Pantothenate kinase; P- 95.3 0.012 4.1E-07 55.7 4.2 26 199-224 80-105 (308)
343 1xjc_A MOBB protein homolog; s 95.3 0.015 5.1E-07 50.0 4.4 31 201-231 6-39 (169)
344 3ly5_A ATP-dependent RNA helic 95.2 0.049 1.7E-06 50.0 8.2 19 200-218 92-110 (262)
345 2cbz_A Multidrug resistance-as 95.2 0.0062 2.1E-07 55.5 1.9 27 197-223 29-55 (237)
346 1bif_A 6-phosphofructo-2-kinas 95.2 0.033 1.1E-06 55.9 7.4 34 199-232 39-75 (469)
347 3tqf_A HPR(Ser) kinase; transf 95.2 0.0067 2.3E-07 52.3 1.9 24 199-222 16-39 (181)
348 3pey_A ATP-dependent RNA helic 95.2 0.047 1.6E-06 52.5 8.3 23 198-220 43-65 (395)
349 3fe2_A Probable ATP-dependent 95.2 0.064 2.2E-06 48.4 8.6 20 199-218 66-85 (242)
350 2pcj_A ABC transporter, lipopr 95.2 0.0053 1.8E-07 55.4 1.2 27 197-223 28-54 (224)
351 1sgw_A Putative ABC transporte 95.1 0.007 2.4E-07 54.3 2.0 27 197-223 33-59 (214)
352 1ewq_A DNA mismatch repair pro 95.1 0.049 1.7E-06 58.0 8.8 23 200-222 577-599 (765)
353 1m8p_A Sulfate adenylyltransfe 95.1 0.0091 3.1E-07 61.6 2.9 36 200-235 397-436 (573)
354 3vkw_A Replicase large subunit 95.1 0.019 6.5E-07 57.0 5.0 22 201-222 163-184 (446)
355 2qm8_A GTPase/ATPase; G protei 95.1 0.04 1.4E-06 52.8 7.2 27 197-223 53-79 (337)
356 2orv_A Thymidine kinase; TP4A 95.1 0.13 4.4E-06 46.4 10.0 66 202-270 22-102 (234)
357 2c9o_A RUVB-like 1; hexameric 95.0 0.00025 8.5E-09 71.3 -8.8 72 301-381 187-262 (456)
358 3ice_A Transcription terminati 95.0 0.088 3E-06 51.3 9.4 27 197-223 172-198 (422)
359 1b0u_A Histidine permease; ABC 95.0 0.0077 2.6E-07 55.7 2.0 27 197-223 30-56 (262)
360 3kta_A Chromosome segregation 95.0 0.011 3.8E-07 50.8 2.9 24 201-224 28-51 (182)
361 2onk_A Molybdate/tungstate ABC 95.0 0.0089 3E-07 54.5 2.3 26 197-223 23-48 (240)
362 2zu0_C Probable ATP-dependent 94.9 0.01 3.4E-07 55.1 2.5 26 197-222 44-69 (267)
363 3l9o_A ATP-dependent RNA helic 94.9 0.051 1.7E-06 60.4 8.5 34 199-232 199-235 (1108)
364 2o8b_B DNA mismatch repair pro 94.9 0.047 1.6E-06 60.0 8.1 21 200-220 790-810 (1022)
365 2ghi_A Transport protein; mult 94.9 0.0085 2.9E-07 55.4 1.9 27 197-223 44-70 (260)
366 1wrb_A DJVLGB; RNA helicase, D 94.9 0.04 1.4E-06 50.1 6.5 18 200-217 61-78 (253)
367 1mv5_A LMRA, multidrug resista 94.9 0.0075 2.6E-07 55.1 1.5 27 197-223 26-52 (243)
368 2iw3_A Elongation factor 3A; a 94.9 0.037 1.3E-06 60.2 7.1 25 197-221 459-483 (986)
369 3cr8_A Sulfate adenylyltranfer 94.9 0.0079 2.7E-07 61.7 1.7 39 198-236 368-410 (552)
370 2olj_A Amino acid ABC transpor 94.9 0.009 3.1E-07 55.3 2.0 27 197-223 48-74 (263)
371 2gk6_A Regulator of nonsense t 94.9 0.02 7E-07 59.7 4.8 23 201-223 197-219 (624)
372 2ixe_A Antigen peptide transpo 94.9 0.009 3.1E-07 55.5 1.9 27 197-223 43-69 (271)
373 2j0s_A ATP-dependent RNA helic 94.9 0.11 3.8E-06 50.4 10.0 22 199-220 74-95 (410)
374 2d2e_A SUFC protein; ABC-ATPas 94.8 0.0094 3.2E-07 54.7 1.9 26 197-222 27-52 (250)
375 1g6h_A High-affinity branched- 94.8 0.0079 2.7E-07 55.5 1.4 27 197-223 31-57 (257)
376 2ff7_A Alpha-hemolysin translo 94.8 0.008 2.7E-07 55.1 1.4 27 197-223 33-59 (247)
377 2pze_A Cystic fibrosis transme 94.8 0.0083 2.8E-07 54.3 1.5 27 197-223 32-58 (229)
378 2fwr_A DNA repair protein RAD2 94.8 0.042 1.4E-06 54.9 6.7 33 201-233 110-142 (472)
379 2ocp_A DGK, deoxyguanosine kin 94.8 0.014 4.9E-07 52.9 3.0 24 201-224 4-27 (241)
380 2yz2_A Putative ABC transporte 94.8 0.0099 3.4E-07 55.1 1.9 27 197-223 31-57 (266)
381 2ged_A SR-beta, signal recogni 94.8 0.028 9.5E-07 48.5 4.7 26 198-223 47-72 (193)
382 1ji0_A ABC transporter; ATP bi 94.7 0.0085 2.9E-07 54.6 1.4 27 197-223 30-56 (240)
383 2gza_A Type IV secretion syste 94.7 0.0093 3.2E-07 57.9 1.7 73 197-269 173-263 (361)
384 4edh_A DTMP kinase, thymidylat 94.7 0.023 8E-07 50.7 4.2 30 201-230 8-40 (213)
385 3fvq_A Fe(3+) IONS import ATP- 94.7 0.011 3.8E-07 57.2 2.2 27 197-223 28-54 (359)
386 3b85_A Phosphate starvation-in 94.7 0.011 3.7E-07 52.7 2.0 24 199-222 22-45 (208)
387 4a2p_A RIG-I, retinoic acid in 94.7 0.28 9.5E-06 49.6 12.9 33 200-232 23-63 (556)
388 3h1t_A Type I site-specific re 94.7 0.068 2.3E-06 55.1 8.3 24 200-223 199-222 (590)
389 2qi9_C Vitamin B12 import ATP- 94.7 0.009 3.1E-07 54.8 1.5 27 197-223 24-50 (249)
390 4i1u_A Dephospho-COA kinase; s 94.7 0.018 6.2E-07 51.3 3.3 30 201-231 11-40 (210)
391 3e2i_A Thymidine kinase; Zn-bi 94.6 0.17 5.7E-06 45.1 9.5 30 202-231 31-63 (219)
392 3tmk_A Thymidylate kinase; pho 94.6 0.027 9.3E-07 50.4 4.4 29 199-227 5-33 (216)
393 3fmo_B ATP-dependent RNA helic 94.6 0.11 3.9E-06 48.7 8.9 19 198-216 130-148 (300)
394 2p6r_A Afuhel308 helicase; pro 94.6 0.034 1.2E-06 58.7 5.8 34 198-231 39-75 (702)
395 2it1_A 362AA long hypothetical 94.6 0.014 4.7E-07 56.6 2.5 27 197-223 27-53 (362)
396 3dkp_A Probable ATP-dependent 94.6 0.038 1.3E-06 49.9 5.4 19 199-217 66-84 (245)
397 1p5z_B DCK, deoxycytidine kina 94.6 0.0065 2.2E-07 56.0 0.1 26 199-224 24-49 (263)
398 2nq2_C Hypothetical ABC transp 94.6 0.01 3.4E-07 54.7 1.4 27 197-223 29-55 (253)
399 2yyz_A Sugar ABC transporter, 94.5 0.014 4.7E-07 56.6 2.4 27 197-223 27-53 (359)
400 2ihy_A ABC transporter, ATP-bi 94.5 0.01 3.5E-07 55.4 1.5 27 197-223 45-71 (279)
401 1v43_A Sugar-binding transport 94.5 0.014 5E-07 56.7 2.5 27 197-223 35-61 (372)
402 1sky_E F1-ATPase, F1-ATP synth 94.5 0.05 1.7E-06 54.4 6.4 25 199-223 151-175 (473)
403 3g5u_A MCG1178, multidrug resi 94.5 0.11 3.9E-06 58.6 10.1 28 196-223 413-440 (1284)
404 2p67_A LAO/AO transport system 94.5 0.064 2.2E-06 51.4 7.0 26 198-223 55-80 (341)
405 1fuu_A Yeast initiation factor 94.5 0.13 4.4E-06 49.5 9.3 18 200-217 59-76 (394)
406 3eiq_A Eukaryotic initiation f 94.5 0.082 2.8E-06 51.3 7.9 21 199-219 77-97 (414)
407 2f9l_A RAB11B, member RAS onco 94.5 0.018 6.1E-07 50.3 2.8 22 201-222 7-28 (199)
408 4ag6_A VIRB4 ATPase, type IV s 94.5 0.034 1.2E-06 54.3 5.0 35 198-232 34-71 (392)
409 1z47_A CYSA, putative ABC-tran 94.5 0.013 4.3E-07 56.7 1.9 27 197-223 39-65 (355)
410 3d31_A Sulfate/molybdate ABC t 94.4 0.012 4.1E-07 56.7 1.8 27 197-223 24-50 (348)
411 1g8f_A Sulfate adenylyltransfe 94.4 0.024 8.2E-07 57.4 4.0 26 200-225 396-421 (511)
412 1oix_A RAS-related protein RAB 94.4 0.018 6E-07 50.1 2.6 23 201-223 31-53 (191)
413 1wp9_A ATP-dependent RNA helic 94.4 0.12 4.2E-06 50.7 9.1 32 201-232 25-60 (494)
414 2f1r_A Molybdopterin-guanine d 94.4 0.011 3.9E-07 50.9 1.3 23 201-223 4-26 (171)
415 1nrj_B SR-beta, signal recogni 94.4 0.02 7E-07 50.5 3.0 25 199-223 12-36 (218)
416 1lw7_A Transcriptional regulat 94.4 0.021 7E-07 55.4 3.2 28 199-226 170-197 (365)
417 2gks_A Bifunctional SAT/APS ki 94.3 0.082 2.8E-06 54.1 7.7 36 200-235 373-411 (546)
418 1g29_1 MALK, maltose transport 94.3 0.015 5E-07 56.7 1.9 27 197-223 27-53 (372)
419 3v9p_A DTMP kinase, thymidylat 94.3 0.019 6.5E-07 51.9 2.5 24 200-223 26-49 (227)
420 2wjy_A Regulator of nonsense t 94.2 0.034 1.2E-06 59.6 4.8 23 201-223 373-395 (800)
421 2dyk_A GTP-binding protein; GT 94.2 0.023 7.9E-07 47.2 2.8 22 201-222 3-24 (161)
422 3sop_A Neuronal-specific septi 94.2 0.019 6.5E-07 53.3 2.5 23 201-223 4-26 (270)
423 2bbs_A Cystic fibrosis transme 94.1 0.015 5.2E-07 54.5 1.7 28 196-223 61-88 (290)
424 2db3_A ATP-dependent RNA helic 94.1 0.2 6.9E-06 49.5 9.9 19 198-216 92-110 (434)
425 1gm5_A RECG; helicase, replica 94.1 0.23 7.8E-06 53.0 10.8 35 198-232 388-425 (780)
426 1z2a_A RAS-related protein RAB 94.1 0.025 8.6E-07 47.2 2.8 22 201-222 7-28 (168)
427 1oxx_K GLCV, glucose, ABC tran 94.1 0.013 4.3E-07 56.7 1.0 27 197-223 29-55 (353)
428 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.026 8.9E-07 56.5 3.3 28 196-223 135-162 (460)
429 3i5x_A ATP-dependent RNA helic 94.0 0.29 9.9E-06 49.9 11.3 19 199-217 111-129 (563)
430 3gd7_A Fusion complex of cysti 94.0 0.019 6.5E-07 56.2 2.2 26 197-222 45-70 (390)
431 3lv8_A DTMP kinase, thymidylat 94.0 0.026 8.8E-07 51.3 2.8 25 199-223 27-51 (236)
432 2wji_A Ferrous iron transport 93.9 0.026 8.8E-07 47.6 2.6 21 201-221 5-25 (165)
433 1f2t_A RAD50 ABC-ATPase; DNA d 93.9 0.027 9.2E-07 47.2 2.7 23 201-223 25-47 (149)
434 1kao_A RAP2A; GTP-binding prot 93.9 0.028 9.7E-07 46.7 2.8 22 201-222 5-26 (167)
435 2pjz_A Hypothetical protein ST 93.9 0.018 6.3E-07 53.2 1.8 25 199-223 30-54 (263)
436 2zej_A Dardarin, leucine-rich 93.9 0.022 7.6E-07 49.0 2.2 21 201-221 4-24 (184)
437 2ce2_X GTPase HRAS; signaling 93.8 0.027 9.3E-07 46.7 2.6 22 201-222 5-26 (166)
438 3fmp_B ATP-dependent RNA helic 93.8 0.12 4.1E-06 51.6 7.7 20 198-217 130-149 (479)
439 1ek0_A Protein (GTP-binding pr 93.8 0.031 1.1E-06 46.7 2.8 22 201-222 5-26 (170)
440 1u8z_A RAS-related protein RAL 93.8 0.031 1.1E-06 46.5 2.8 23 200-222 5-27 (168)
441 1z0j_A RAB-22, RAS-related pro 93.7 0.032 1.1E-06 46.6 2.8 22 201-222 8-29 (170)
442 1upt_A ARL1, ADP-ribosylation 93.7 0.029 1E-06 47.0 2.6 24 199-222 7-30 (171)
443 2nzj_A GTP-binding protein REM 93.7 0.031 1.1E-06 47.1 2.7 22 201-222 6-27 (175)
444 2dpy_A FLII, flagellum-specifi 93.7 0.046 1.6E-06 54.4 4.3 28 198-225 156-183 (438)
445 2p5s_A RAS and EF-hand domain 93.7 0.026 8.9E-07 49.2 2.2 24 199-222 28-51 (199)
446 1wms_A RAB-9, RAB9, RAS-relate 93.7 0.033 1.1E-06 47.0 2.8 22 201-222 9-30 (177)
447 3sqw_A ATP-dependent RNA helic 93.7 0.4 1.4E-05 49.2 11.5 19 199-217 60-78 (579)
448 1z08_A RAS-related protein RAB 93.7 0.034 1.2E-06 46.6 2.8 22 201-222 8-29 (170)
449 2vp4_A Deoxynucleoside kinase; 93.6 0.027 9.2E-07 50.7 2.3 29 201-230 22-50 (230)
450 3ld9_A DTMP kinase, thymidylat 93.6 0.032 1.1E-06 50.3 2.7 26 200-225 22-47 (223)
451 2ykg_A Probable ATP-dependent 93.6 0.27 9.2E-06 51.5 10.3 23 200-222 29-51 (696)
452 2lkc_A Translation initiation 93.6 0.036 1.2E-06 46.9 3.0 24 198-221 7-30 (178)
453 4a2q_A RIG-I, retinoic acid in 93.6 0.61 2.1E-05 49.9 13.2 33 200-232 264-304 (797)
454 1ky3_A GTP-binding protein YPT 93.6 0.035 1.2E-06 47.0 2.8 23 200-222 9-31 (182)
455 2obl_A ESCN; ATPase, hydrolase 93.6 0.04 1.4E-06 53.1 3.6 29 198-226 70-98 (347)
456 3lxw_A GTPase IMAP family memb 93.6 0.1 3.5E-06 47.4 6.2 23 200-222 22-44 (247)
457 1g16_A RAS-related protein SEC 93.6 0.032 1.1E-06 46.7 2.6 22 201-222 5-26 (170)
458 2xzl_A ATP-dependent helicase 93.6 0.052 1.8E-06 58.3 4.7 21 201-221 377-397 (802)
459 1c1y_A RAS-related protein RAP 93.5 0.037 1.3E-06 46.1 2.8 22 201-222 5-26 (167)
460 2z83_A Helicase/nucleoside tri 93.5 0.2 6.8E-06 50.0 8.6 35 198-232 20-58 (459)
461 1r8s_A ADP-ribosylation factor 93.5 0.037 1.3E-06 46.0 2.8 22 201-222 2-23 (164)
462 4tmk_A Protein (thymidylate ki 93.5 0.036 1.2E-06 49.5 2.8 23 201-223 5-27 (213)
463 1r2q_A RAS-related protein RAB 93.5 0.038 1.3E-06 46.1 2.8 22 201-222 8-29 (170)
464 3q85_A GTP-binding protein REM 93.5 0.035 1.2E-06 46.5 2.6 21 201-221 4-24 (169)
465 2wjg_A FEOB, ferrous iron tran 93.4 0.035 1.2E-06 47.5 2.6 22 201-222 9-30 (188)
466 2www_A Methylmalonic aciduria 93.4 0.068 2.3E-06 51.4 4.8 24 200-223 75-98 (349)
467 2erx_A GTP-binding protein DI- 93.4 0.038 1.3E-06 46.2 2.7 21 201-221 5-25 (172)
468 2qag_B Septin-6, protein NEDD5 93.3 0.032 1.1E-06 55.1 2.4 26 197-222 38-65 (427)
469 1yks_A Genome polyprotein [con 93.3 0.19 6.4E-06 49.9 8.1 19 198-216 7-25 (440)
470 3bc1_A RAS-related protein RAB 93.3 0.04 1.4E-06 47.1 2.8 22 201-222 13-34 (195)
471 3q72_A GTP-binding protein RAD 93.3 0.033 1.1E-06 46.5 2.2 21 201-221 4-24 (166)
472 4dsu_A GTPase KRAS, isoform 2B 93.3 0.042 1.4E-06 46.9 2.8 22 201-222 6-27 (189)
473 1pui_A ENGB, probable GTP-bind 93.2 0.019 6.6E-07 50.3 0.6 27 196-222 23-49 (210)
474 1qhl_A Protein (cell division 93.2 0.019 6.6E-07 51.8 0.7 22 202-223 30-51 (227)
475 3g5u_A MCG1178, multidrug resi 93.2 0.14 4.7E-06 58.0 7.6 27 197-223 1057-1083(1284)
476 2y8e_A RAB-protein 6, GH09086P 93.2 0.04 1.4E-06 46.5 2.6 22 201-222 16-37 (179)
477 1z0f_A RAB14, member RAS oncog 93.2 0.043 1.5E-06 46.3 2.8 22 201-222 17-38 (179)
478 2gj8_A MNME, tRNA modification 93.2 0.031 1E-06 47.6 1.8 23 200-222 5-27 (172)
479 2wsm_A Hydrogenase expression/ 93.2 0.042 1.4E-06 48.6 2.8 24 200-223 31-54 (221)
480 2hxs_A RAB-26, RAS-related pro 93.2 0.038 1.3E-06 46.7 2.4 22 201-222 8-29 (178)
481 3bfv_A CAPA1, CAPB2, membrane 93.2 0.14 4.7E-06 47.4 6.4 54 171-233 63-120 (271)
482 1m7b_A RND3/RHOE small GTP-bin 93.2 0.04 1.4E-06 47.2 2.6 22 201-222 9-30 (184)
483 2fn4_A P23, RAS-related protei 93.1 0.041 1.4E-06 46.5 2.6 22 201-222 11-32 (181)
484 2jlq_A Serine protease subunit 93.1 0.23 7.9E-06 49.4 8.4 14 201-214 21-34 (451)
485 1svi_A GTP-binding protein YSX 93.1 0.046 1.6E-06 47.1 2.9 24 199-222 23-46 (195)
486 3oiy_A Reverse gyrase helicase 93.1 0.11 3.6E-06 50.9 5.9 21 199-219 36-56 (414)
487 2oil_A CATX-8, RAS-related pro 93.1 0.045 1.5E-06 47.2 2.8 22 201-222 27-48 (193)
488 3con_A GTPase NRAS; structural 93.1 0.045 1.5E-06 47.0 2.8 22 201-222 23-44 (190)
489 1m2o_B GTP-binding protein SAR 93.1 0.039 1.3E-06 47.7 2.3 24 199-222 23-46 (190)
490 3clv_A RAB5 protein, putative; 93.1 0.047 1.6E-06 47.0 2.8 23 200-222 8-30 (208)
491 2efe_B Small GTP-binding prote 93.0 0.048 1.6E-06 46.2 2.8 22 201-222 14-35 (181)
492 2bme_A RAB4A, RAS-related prot 93.0 0.044 1.5E-06 46.8 2.6 22 201-222 12-33 (186)
493 3tw8_B RAS-related protein RAB 93.0 0.043 1.5E-06 46.3 2.5 22 200-221 10-31 (181)
494 1ko7_A HPR kinase/phosphatase; 93.0 0.046 1.6E-06 51.7 2.9 24 199-222 144-167 (314)
495 2a9k_A RAS-related protein RAL 93.0 0.048 1.6E-06 46.3 2.8 23 200-222 19-41 (187)
496 2yv5_A YJEQ protein; hydrolase 93.0 0.064 2.2E-06 50.5 3.8 24 199-223 165-188 (302)
497 2b6h_A ADP-ribosylation factor 92.9 0.042 1.4E-06 47.6 2.4 24 198-221 28-51 (192)
498 3ch4_B Pmkase, phosphomevalona 92.9 0.075 2.6E-06 46.9 3.9 41 197-237 9-50 (202)
499 3def_A T7I23.11 protein; chlor 92.9 0.17 5.9E-06 46.2 6.7 24 199-222 36-59 (262)
500 1nij_A Hypothetical protein YJ 92.9 0.073 2.5E-06 50.5 4.1 23 201-223 6-28 (318)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-64 Score=493.82 Aligned_cols=369 Identities=43% Similarity=0.723 Sum_probs=346.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhccccccccccc
Q 039866 22 DDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQR 101 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (418)
.....++++++.++....+.+.+|+.+.+.++.++..++++++.++..|+.++++.+.++..
T Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~------------------ 82 (405)
T 4b4t_J 21 PYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDK------------------ 82 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTS------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCC------------------
Confidence 33456788888888888889999999999999999999999999999999999999999865
Q ss_pred CCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHH
Q 039866 102 KGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQE 176 (418)
Q Consensus 102 ~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~ 176 (418)
.++++.+ ++.+...++...++||+.+.++.++..+...+|...++.+..+...+.|+++|++|+|++++++.
T Consensus 83 ---~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~ 159 (405)
T 4b4t_J 83 ---KVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKE 159 (405)
T ss_dssp ---CEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHH
T ss_pred ---eEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHH
Confidence 4555554 45678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHh
Q 039866 177 LIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE 256 (418)
Q Consensus 177 l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~ 256 (418)
|.+.+..|+.+|++|.++|++||+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+.
T Consensus 160 l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 160 IKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMARE 239 (405)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCC
Q 039866 257 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 257 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p 336 (418)
..||||||||+|.++++|..+..+++....+.+.++|..++++....+++||+|||+|+.+||+++|||||+..|+||+|
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 99999999999999999988777778888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 337 SEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 337 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
+.++|.+||+.+++++++..++++..+|..++||||+||.++|++|++.|+++++..|+.+||..|++++..+..
T Consensus 320 d~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-64 Score=504.06 Aligned_cols=402 Identities=70% Similarity=1.093 Sum_probs=348.2
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCch-----hhhc
Q 039866 17 SSMTTDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDE-----AEED 91 (418)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 91 (418)
.+++.+.+..|.+.++.++..++.+..+++.+.+.+++++.+.++.+..++.+|+.++++.+.++.+.... ....
T Consensus 23 ~~~~~~~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~ 102 (434)
T 4b4t_M 23 LNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQ 102 (434)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC-----------------
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhh
Confidence 34455667788888899999999999999999999999999999999999999999999999887642111 1122
Q ss_pred ccccccccccCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCcc
Q 039866 92 GANIDLDSQRKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYND 166 (418)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (418)
+..........++..+++++ ++++.+.++...++||+.+.++.++..++..+|..+++.+..+.....|+++|++
T Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~d 182 (434)
T 4b4t_M 103 GGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSD 182 (434)
T ss_dssp ----------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGG
T ss_pred hhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHh
Confidence 33344444556667788776 5678899999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHH
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKL 246 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~ 246 (418)
|+|++++++.|.+.+..|+.+|++|.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ 262 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKL 262 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCC
Q 039866 247 VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGR 326 (418)
Q Consensus 247 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~R 326 (418)
++.+|..++...||||||||+|.++++|.++..+++....+.+.++|+.++++.+..+++||+|||+|+.+||+++||||
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGR 342 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGR 342 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTS
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCc
Confidence 99999999999999999999999999998887777888899999999999999998999999999999999999999999
Q ss_pred ceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 327 LDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 327 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
|+..|+||.|+.++|.+||+.+++++.+..++++..+|..++||||+||.++|++|++.|+++++..|+.+||..|+.++
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 343 LDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred eeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCC
Q 039866 407 QAKKKASLNYYA 418 (418)
Q Consensus 407 ~~~~~~~~~~~~ 418 (418)
+++++.++.|||
T Consensus 423 ~~~~~~~i~~Ya 434 (434)
T 4b4t_M 423 QARKSKSVSFYA 434 (434)
T ss_dssp SSSCCCCCCCCC
T ss_pred hCCCCcCccccC
Confidence 999999999997
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-62 Score=479.15 Aligned_cols=354 Identities=46% Similarity=0.802 Sum_probs=331.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEeec-----
Q 039866 37 VLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS----- 111 (418)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 111 (418)
.+++++-..++..+.++.+.++.++++++++..|+.++++.+.+|.+ .++|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~---------------------~~iv~~~~~~~~ 128 (437)
T 4b4t_I 70 LLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDD---------------------HAIVTSPTMPDY 128 (437)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTTS---------------------EEEEECSSSCCC
T ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecCC---------------------EEEEEcCCCCEE
Confidence 34566666666677888889999999999999999999999999976 6777764
Q ss_pred ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHH
Q 039866 112 YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERF 191 (418)
Q Consensus 112 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~ 191 (418)
++.+.+.+++..++||+.+.++.++..++..+|...+..+..+.+...|+++|++|+|++++++.|.+.+..|+.+|++|
T Consensus 129 ~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f 208 (437)
T 4b4t_I 129 YVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELY 208 (437)
T ss_dssp EEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHH
T ss_pred EEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q 039866 192 QKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 192 ~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 271 (418)
.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+...||||||||+|.++
T Consensus 209 ~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 209 EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 272 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
+.|..+...++....+.+.++|+.++++....+++||+|||+++.|||+++|||||+..|+|+.|+.++|.+||+.++++
T Consensus 289 ~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 289 TKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp CCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 99988777777888999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 352 MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 352 ~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
+.+..++++..+|..++||||+||.++|++|++.|+++++..|+.+||..|+.++.++..
T Consensus 369 ~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 369 MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCC
Confidence 999899999999999999999999999999999999999999999999999999988665
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-61 Score=479.96 Aligned_cols=376 Identities=38% Similarity=0.691 Sum_probs=348.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccc
Q 039866 21 TDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQ 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (418)
...++.++++++.++..++-+.+.++++.+.++.++..++++++.++..|+.++++.+.+|..
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~----------------- 106 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQN----------------- 106 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETT-----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCC-----------------
Confidence 456788899999999999999999999999999999999999999999999999999999975
Q ss_pred cCCceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHH
Q 039866 101 RKGKCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQ 175 (418)
Q Consensus 101 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 175 (418)
..+++++ ++.+.+.++...+++|+.+.++.+...++..+|...+..+..+.....|+++|++|+|++++++
T Consensus 107 ----~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~ 182 (428)
T 4b4t_K 107 ----TGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQ 182 (428)
T ss_dssp ----EEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHH
T ss_pred ----eeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHH
Confidence 5566654 4567888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHH
Q 039866 176 ELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK 255 (418)
Q Consensus 176 ~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~ 255 (418)
.|.+.+..|+.+|++|.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+
T Consensus 183 ~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 183 EIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp HHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcC-
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELP- 334 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~- 334 (418)
...||||||||+|.+++.|.+....++.+..+.+.++|..++++.+..+++||+|||+++.+||+++|||||+..|+||
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~ 342 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence 9999999999999999999877777777888999999999999988899999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhh--hh
Q 039866 335 HPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK--KA 412 (418)
Q Consensus 335 ~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~--~~ 412 (418)
+|+.++|..||+.+++++++..++++..+|..++||||+||.++|++|++.|+++++..|+.+||.+|+....... ..
T Consensus 343 lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~ 422 (428)
T 4b4t_K 343 LRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVD 422 (428)
T ss_dssp SCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSCCCSS
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCccCCcc
Confidence 8999999999999999999888999999999999999999999999999999999999999999999998764322 24
Q ss_pred ccccC
Q 039866 413 SLNYY 417 (418)
Q Consensus 413 ~~~~~ 417 (418)
..+||
T Consensus 423 ~~d~y 427 (428)
T 4b4t_K 423 KFDFY 427 (428)
T ss_dssp CCCSC
T ss_pred Hhhhh
Confidence 55776
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-60 Score=472.15 Aligned_cols=354 Identities=41% Similarity=0.702 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEeec-----
Q 039866 37 VLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS----- 111 (418)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 111 (418)
.++.++..+++..+.++.+..+.+++++.|+..|+.++++.+.++.+ ..+++++
T Consensus 69 ~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~---------------------~~iv~~~~g~~~ 127 (437)
T 4b4t_L 69 RYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEE---------------------KYIVKASSGPRY 127 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSS---------------------CEEEEETTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCC---------------------cEEEEECCCCEE
Confidence 44555666666666777778888888999999999999999998865 4556554
Q ss_pred ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHH
Q 039866 112 YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERF 191 (418)
Q Consensus 112 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~ 191 (418)
++.+.+.++...+++|+.+.++.++..+...+|...++.+..+.+...|+++|++|+|++++++.|.+.+..|+.+|++|
T Consensus 128 ~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f 207 (437)
T 4b4t_L 128 IVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207 (437)
T ss_dssp EECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred EEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q 039866 192 QKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 271 (418)
Q Consensus 192 ~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 271 (418)
.++|++||+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..++...||||||||+|.++
T Consensus 208 ~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred HhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc
Q 039866 272 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
++|.+++...+......+.++|..++++.+..+++||+|||+|+.+||+++|||||+..|+||.|+.++|.+||+.++++
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 99987777777788899999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 352 MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 352 ~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
+.+..++++..+|..++||||+||.++|++|++.|+++++..|+.+||..|++++.+.++
T Consensus 368 ~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 368 VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 998889999999999999999999999999999999999999999999999999988554
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-57 Score=447.27 Aligned_cols=306 Identities=47% Similarity=0.804 Sum_probs=292.4
Q ss_pred ceEEEeec-----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHH
Q 039866 104 KCVVLKTS-----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELI 178 (418)
Q Consensus 104 ~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~ 178 (418)
..++++.+ ++.+...|++..++||+.+.++.++..+...+|...+..+..|.+...|+++|++|+|++++++.|.
T Consensus 143 ~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~ 222 (467)
T 4b4t_H 143 AKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLR 222 (467)
T ss_dssp CCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHH
T ss_pred CcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHH
Confidence 34566654 4678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCC
Q 039866 179 EAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS 258 (418)
Q Consensus 179 ~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~ 258 (418)
+.+..|+.+|++|.++|++||+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..++...
T Consensus 223 e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 223 EVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK 302 (467)
T ss_dssp HHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCH
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSE 338 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~ 338 (418)
||||||||+|.+++.|.++..+.+......+.++|..++++....+++||+|||+++.|||+++|||||++.|+|+.|+.
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~ 382 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL 382 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCH
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCH
Confidence 99999999999999998777777778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 339 EARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 339 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
++|.+||+.+++.+.+..++++..||..+.||||+||.++|++|++.|+++++..|+.+||..|+.++...
T Consensus 383 ~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 383 EGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998863
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.2e-45 Score=386.20 Aligned_cols=255 Identities=40% Similarity=0.733 Sum_probs=195.5
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
...|.+.|++|+|++++++.|.+.+..|+.+|+.|.++|+.+++++|||||||||||++|+++|.+++.+|+.+++++++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q 039866 237 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 316 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~ 316 (418)
++|+|+++..++.+|..|+...||||||||||.+++.|..+...++....+.+.++|.+++++.+..+++||+|||+|+.
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999988655444444556788899999999988889999999999999
Q ss_pred CChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC------
Q 039866 317 LDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------ 390 (418)
Q Consensus 317 l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------ 390 (418)
|||+++|||||+..|++|+|+.++|.+||+.++++.++..++++..||..++||||+||.++|++|++.|+++.
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~ 708 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC----
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999998889999999999999999999999999999998762
Q ss_pred -------------------CCCccHHHHHHHHHHHHHhhh
Q 039866 391 -------------------ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 391 -------------------~~~It~~d~~~Al~~~~~~~~ 411 (418)
...|+.+||.+|++.+.++-+
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp -------------------CCC----CCTTTC--------
T ss_pred hhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 135999999999999998644
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.3e-42 Score=367.41 Aligned_cols=250 Identities=40% Similarity=0.718 Sum_probs=228.8
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..|.++|++|+|++++++.|.+.+..|+.+|++|.++|+.||+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
++.|+++..++.+|..|+.+.|+||||||+|.+++++.++..... .+.+.+++..++++....+++||+|||+++.+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~---~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTH---HHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHH---HHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 999999999999999999999999999999999998865543332 35566777777777777889999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC-------
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------- 390 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------- 390 (418)
|++++|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|..++||+|+||..+|++|.+.|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999988899999999999999999999999999999998763
Q ss_pred ----------CCCccHHHHHHHHHHHHHhh
Q 039866 391 ----------ATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 391 ----------~~~It~~d~~~Al~~~~~~~ 410 (418)
...|+.+||..|+..+.++.
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 23578899999998877643
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-38 Score=303.21 Aligned_cols=260 Identities=57% Similarity=0.963 Sum_probs=242.7
Q ss_pred ccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 153 AMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 153 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
.+.....|+..|++|+|++.+++.|.+.+..++.+++.+..+|+.+++++||+||||||||++|+++|+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 44555678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
+++...+.|.....+..+|..+....|+||||||+|.+.+++.+....++...+..+..+++.++......+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988877666667788999999999988877778999999999
Q ss_pred CCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCC
Q 039866 313 RADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDAT 392 (418)
Q Consensus 313 ~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~ 392 (418)
.++.+++++++++||+..+.++.|+.++|.+|++.++....+..+.++..++..+.|+++++|+.+|+.|...|..++..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHhhhh
Q 039866 393 EVNHEDFNEGIIQVQAKKKA 412 (418)
Q Consensus 393 ~It~~d~~~Al~~~~~~~~~ 412 (418)
.|+.+||.+|+..+...+..
T Consensus 245 ~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 245 YVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp SBCHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHhcccc
Confidence 99999999999999876543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.7e-39 Score=313.07 Aligned_cols=254 Identities=40% Similarity=0.735 Sum_probs=221.6
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
...|..+|++|+|++++++.+.+.+..++.+|+.|..+|+.+++++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q 039866 237 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 316 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~ 316 (418)
..++|.....++.+|..+....|+||||||+|.+.+.+......+.....+.+.+++..+++.....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 99999998889999999999999999999999998765432211111112334455555555556678999999999999
Q ss_pred CChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC------
Q 039866 317 LDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------ 390 (418)
Q Consensus 317 l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------ 390 (418)
++++++|+|||+..++++.|+.++|.+|++.+++...+..++++..++..+.||+|+||.++|++|.+.|..+.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998887788899999999999999999999999999887542
Q ss_pred -------------------CCCccHHHHHHHHHHHHHhh
Q 039866 391 -------------------ATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 391 -------------------~~~It~~d~~~Al~~~~~~~ 410 (418)
...|+.+||..|++.+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 247 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 14699999999999887643
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.2e-37 Score=313.63 Aligned_cols=249 Identities=45% Similarity=0.765 Sum_probs=221.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.+..+|++|+|++++++.+.+.+.. +.++..|.++|..+|+++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4567899999999999999997754 678889999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
+.|.+...++.+|..+....|+||||||+|.+++.++.+...++.+....+.+++..++++....+++||++||+++.++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99998888999999999999999999999999887755444445566677888888887776667899999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 398 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d 398 (418)
++++|+|||+..+.++.|+.++|.+|++.+++..++..++++..++..+.|++|+||.++|++|...|.+++...|+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHH
Q 039866 399 FNEGIIQVQA 408 (418)
Q Consensus 399 ~~~Al~~~~~ 408 (418)
|..|+..+..
T Consensus 249 l~~al~~v~~ 258 (476)
T 2ce7_A 249 FEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.5e-38 Score=296.95 Aligned_cols=249 Identities=39% Similarity=0.710 Sum_probs=208.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.|.++|++|+|.+++++.|.+.+..++.+++.+..+++.+++|++|+||||||||++++++|..++.+++.++++++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
+.|+....++.+|..++...|+++|+||+|.+++.+...... ...+.+.+++..+++...+..++++++||+|+.+|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~---~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG---ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcch---HHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888888889999999988899999999999987655322111 12245567777777777777899999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc---CCCCCCCCHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHh----
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRK---MTVHPDVNFEELARST--DDFNGAQLKAVCVEAGMLALRR---- 389 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~--~g~s~~di~~l~~~A~~~A~~~---- 389 (418)
++++|||||+..|+++.|+.++|.+|++.+++. .....++++..++..+ +||||+||..+|++|.+.|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998853 3445788999999864 5999999999999999999875
Q ss_pred -------CCCCccHHHHHHHHHHHHHhh
Q 039866 390 -------DATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 390 -------~~~~It~~d~~~Al~~~~~~~ 410 (418)
+...|+.+||..|++.+.++.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCCC
Confidence 234799999999999887743
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.2e-36 Score=286.27 Aligned_cols=249 Identities=41% Similarity=0.720 Sum_probs=219.0
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..+...|++|+|++.+++.+.+.+.. +.+++.+...|..++++++|+||||||||++|+++|+.++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34678899999999999999987654 67777888888888999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
.+.|.....++.+|..+....|+++||||+|.+.+.+......+.......+.+++..+++.....+++||+|||.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 89999888999999999988899999999999988765443334444556777888888777777789999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 397 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~ 397 (418)
++++++++||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||++++|.++|+.|...|..++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 039866 398 DFNEGIIQVQ 407 (418)
Q Consensus 398 d~~~Al~~~~ 407 (418)
||..|+..+.
T Consensus 244 ~~~~a~~~~~ 253 (257)
T 1lv7_A 244 EFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=297.04 Aligned_cols=248 Identities=35% Similarity=0.631 Sum_probs=217.8
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-CCcEEEEccchhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQLV 236 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~s~l~ 236 (418)
..|+++|++|+|++++++.|.+.+..|+.+++.|.. +..|++++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 457889999999999999999999999999999874 35678999999999999999999999999 8999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCCeEEEEEeCCCC
Q 039866 237 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRAD 315 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~vivI~ttn~~~ 315 (418)
..+.|..+..++.+|..++...|+||||||+|.+++.+..... ....+.+.+++..+++.. ...+++||+|||.++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES---EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCT---THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccc---hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999887754422 234455667777777664 357899999999999
Q ss_pred CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----
Q 039866 316 ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD---- 390 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~---- 390 (418)
.++++++| ||+..+.++.|+.++|.+|++.++...... .+.++..++..+.||+|+||..+|++|.+.|+++.
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 999999999999999999999999877654 56789999999999999999999999999988651
Q ss_pred ---------------------------------------------CCCccHHHHHHHHHHHHHhhh
Q 039866 391 ---------------------------------------------ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 391 ---------------------------------------------~~~It~~d~~~Al~~~~~~~~ 411 (418)
...|+.+||..|++.++++-+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~ 304 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVN 304 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCC
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCC
Confidence 136999999999999887543
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=7.2e-37 Score=297.48 Aligned_cols=250 Identities=32% Similarity=0.593 Sum_probs=213.3
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
+...|+..|++|+|++.+++.|.+.+..++.+++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 34567889999999999999999999999999998877 45778899999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
...+.|..+..++.+|..++...|+||||||||.+.+.+..........++..++..++... ....+++||+|||.++
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--NDSQGVLVLGATNIPW 165 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--TSCCCEEEEEEESCGG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--ccCCceEEEEecCChh
Confidence 99999999999999999999999999999999999887755444444444444444444322 2346799999999999
Q ss_pred CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCC---
Q 039866 316 ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA--- 391 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~--- 391 (418)
.+++++++ ||+..++++.|+.++|.+|++.++...... .+.++..++..+.||+|+||..+|++|.+.|+++..
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999999877654 567889999999999999999999999999987631
Q ss_pred ----------------------------------------CCccHHHHHHHHHHHHHhh
Q 039866 392 ----------------------------------------TEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 392 ----------------------------------------~~It~~d~~~Al~~~~~~~ 410 (418)
..|+.+||..|++.+.++-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 3599999999999988754
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1e-35 Score=303.58 Aligned_cols=249 Identities=40% Similarity=0.721 Sum_probs=224.0
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+...|++|+|++.+++.+.+.+..++.+++.|..+|..++.++||+||||||||++|+++|+.++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~ 319 (418)
.|+....++.+|..+....|++|||||||.+.+++..........++..|+.+++ +.....+++||+|||+++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld---~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD---GLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH---HSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh---ccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999987754433333345555555555 4445678999999999999999
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCC-------
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDAT------- 392 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~------- 392 (418)
+++++|||+..+.++.|+.++|.+|++.++..+.+..+.++..++..+.||++++|..+|++|...|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999988888889999999999999999999999999999887533
Q ss_pred ----------CccHHHHHHHHHHHHHhhh
Q 039866 393 ----------EVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 393 ----------~It~~d~~~Al~~~~~~~~ 411 (418)
.|+.+||..|++.+.++..
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 4899999999999988654
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=5.5e-36 Score=294.93 Aligned_cols=249 Identities=33% Similarity=0.599 Sum_probs=205.6
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
...+...|++|+|++.+++.|.+.+..++.+++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3457789999999999999999999999999999877 567888999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCCeEEEEEeCCCC
Q 039866 237 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRAD 315 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~vivI~ttn~~~ 315 (418)
..+.|..+..++.+|..++...|+||||||+|.+.+.+....... ......+++..+++.. ...+++||+|||.++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~---~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA---SRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTH---HHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchH---HHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 999999999999999999999999999999999987764432222 2233444555444443 246799999999999
Q ss_pred CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----
Q 039866 316 ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD---- 390 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~---- 390 (418)
.+++++++ ||+..+.+++|+.++|.+|++.++...... .+.++..|+..+.||+|+||..+|++|.+.|+++.
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999999999999999999877643 56788999999999999999999999999998761
Q ss_pred ---------------------------------------CCCccHHHHHHHHHHHHHhhh
Q 039866 391 ---------------------------------------ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 391 ---------------------------------------~~~It~~d~~~Al~~~~~~~~ 411 (418)
...|+.+||..|++.+.++-.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 135999999999999987543
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=281.63 Aligned_cols=250 Identities=38% Similarity=0.647 Sum_probs=197.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
|...|++|+|++.+++.+.+.+.. +.+++.|..+|+.+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 457899999999999999987754 7778888889999999999999999999999999999999999999999998888
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCC-CCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS-GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
.|.....++.+|..+....|+||||||+|.+...+...... .+.+.+..+..++..++......+++||+|||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888888999999998889999999999998765332211 13345567788888888777777899999999999999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC--HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccH
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN--FEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNH 396 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 396 (418)
++++++|||+..++++.|+.++|.+|++.++.......+.+ ...++..+.|+++++|..+|+.|...|..++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999998877654333 4788999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHhh
Q 039866 397 EDFNEGIIQVQAKK 410 (418)
Q Consensus 397 ~d~~~Al~~~~~~~ 410 (418)
+||..|+..+....
T Consensus 240 ~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 240 LNFEYAVERVLAGT 253 (262)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCh
Confidence 99999999988744
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.3e-35 Score=298.43 Aligned_cols=248 Identities=44% Similarity=0.738 Sum_probs=224.6
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 239 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~ 239 (418)
+..+|++|+|+++++..+.+.+.. +.++..|..+++..++++||+||||||||++|+++|..++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678899999999999999987654 6677888899999999999999999999999999999999999999999999888
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q 039866 240 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 319 (418)
Q Consensus 240 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~ 319 (418)
.|.....++.+|+.+....|+++||||||.++..+......++.+....+.+++..+++...+..+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888888899999887889999999999998776543333455667888899999988877778999999999999999
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 399 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~ 399 (418)
+++|+|||++.+.++.|+.++|.+|++.+++...+..++++..++..+.|++|+||.++|++|+..|.+++...|+.+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999988888888999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHH
Q 039866 400 NEGIIQVQA 408 (418)
Q Consensus 400 ~~Al~~~~~ 408 (418)
..|+..+..
T Consensus 265 ~~al~~v~~ 273 (499)
T 2dhr_A 265 EEAADRVMM 273 (499)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998865
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=9e-34 Score=266.15 Aligned_cols=245 Identities=44% Similarity=0.752 Sum_probs=212.1
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..|..+|++++|+++++..+.+.+.. ..++..+...++..+++++|+||||||||+++++++..++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 45778999999999999999886654 56677888999998999999999999999999999999999999999998888
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
.+.+.....++.+|+.+....|+++++||+|.++..+.........+....+.+++..+++...+..++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 77777777888899998877899999999999976654322223445566777888888877666778999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 397 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~ 397 (418)
|++++|++||+..+.++.|+.++|.+|++.+++...+..++++..++..+.|++++||.++|++|...|..++...|+.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888878888999999999999999999999999999998888899999
Q ss_pred HHHHHH
Q 039866 398 DFNEGI 403 (418)
Q Consensus 398 d~~~Al 403 (418)
||.+|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999885
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=9e-35 Score=294.38 Aligned_cols=249 Identities=35% Similarity=0.620 Sum_probs=207.8
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-CCcEEEEccch
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQ 234 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~s~ 234 (418)
....|+..|++|+|++.+++.|.+.+..|+.+++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 44567889999999999999999999999999988864 34678899999999999999999999999 89999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCCeEEEEEeCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNR 313 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~vivI~ttn~ 313 (418)
+...+.|..+..++.+|..++...|+||||||||.+++.+...... ...+.+.+++..+++... ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG---GGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcccc---HHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999988889999999999999999999999998877544322 233455677777776543 568999999999
Q ss_pred CCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC--
Q 039866 314 ADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-- 390 (418)
Q Consensus 314 ~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-- 390 (418)
++.++++++| ||+..+.++.|+.++|..|++.++...... .+.++..|+..+.||+|+||..+|++|.+.|+++.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999876643 56788999999999999999999999999988651
Q ss_pred -----------------------------------------------CCCccHHHHHHHHHHHHHhh
Q 039866 391 -----------------------------------------------ATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 391 -----------------------------------------------~~~It~~d~~~Al~~~~~~~ 410 (418)
...|+++||..|+..++++-
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 13689999999999988754
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.9e-32 Score=260.66 Aligned_cols=245 Identities=44% Similarity=0.752 Sum_probs=212.5
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..|..+|++|+|++++++.+.+.+.. ...+..+...++..+.+++|+||||||||+++++++..++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34778999999999999999886654 56677888889888889999999999999999999999999999999998888
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
.+.+.....+..+|+.+....|+++++||+|.++..+.........+....+.+++..+++...+..++++++||.|+.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 77777777788899999878899999999999876553221222445667788888888877666778999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 397 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~ 397 (418)
|++++|++||+..+.++.|+.++|.+|++.+++...+..++++..++..+.|++++||.++|+.|...|..++...|+.+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~ 271 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 271 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHH
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999888877888999999999999999999999999999998888899999
Q ss_pred HHHHHH
Q 039866 398 DFNEGI 403 (418)
Q Consensus 398 d~~~Al 403 (418)
||.+|+
T Consensus 272 dl~~a~ 277 (278)
T 1iy2_A 272 DLEEAA 277 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999885
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-33 Score=270.24 Aligned_cols=250 Identities=35% Similarity=0.603 Sum_probs=208.2
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
+...++..|++|+|++.+++.+.+.+..+..+++.|...+ .+++++||+||||||||++|+++|+.++.+++.++++++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 3455778999999999999999999999988888887665 567899999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 236 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
...+.|.....++.+|..+....|+||||||+|.+...+...........+..++..++.........+++||++||.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 99999998888999999999999999999999999877654433334445555555555443322335799999999999
Q ss_pred CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----
Q 039866 316 ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD---- 390 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~---- 390 (418)
.+++++++ ||+..+.++.|+.++|..|++.++...... .+..+..++..+.|+++++|..+|+.|...|.++.
T Consensus 171 ~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~ 248 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ 248 (297)
T ss_dssp GBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC---
T ss_pred hCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999998876543 34567889999999999999999999999998764
Q ss_pred --------CCCccHHHHHHHHHHHHH
Q 039866 391 --------ATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 391 --------~~~It~~d~~~Al~~~~~ 408 (418)
...|+.+||..|+..+.+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 249 VKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp -----CCCCCCCCHHHHHHHTTSCCC
T ss_pred cccccccccCCcCHHHHHHHHHHcCC
Confidence 257999999999987765
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=5e-36 Score=283.60 Aligned_cols=252 Identities=42% Similarity=0.725 Sum_probs=211.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.+...|++|+|++.+++.+.+.+.. +.+++.|..++..+++++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4567899999999999999997654 788999999999999999999999999999999999999999999999999888
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC-CCCHHHHHHHHHHHHhhcCCCC-CCCeEEEEEeCCCCC
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNRADI 316 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~~-~~~vivI~ttn~~~~ 316 (418)
+.|.....++.+|..+....|+||||||+|.+...+..++. ..+......+.+++..+++... ..+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 88877666778899998888999999999999876532111 0111112234556666655443 345899999999999
Q ss_pred CChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccH
Q 039866 317 LDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNH 396 (418)
Q Consensus 317 l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 396 (418)
+++++++++||+..+.++.|+.++|.++++.++....+..+.++..++..+.||+|++|.++|+.|...|..++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999988877777888899999999999999999999999998887889999
Q ss_pred HHHHHHHHHHHHhhh
Q 039866 397 EDFNEGIIQVQAKKK 411 (418)
Q Consensus 397 ~d~~~Al~~~~~~~~ 411 (418)
+||..|+..+.+...
T Consensus 244 ~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 244 QHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHhhcch
Confidence 999999988776443
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=275.28 Aligned_cols=256 Identities=35% Similarity=0.598 Sum_probs=212.5
Q ss_pred hhhccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 150 RVKAMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
.+........+...|++|+|++.+++.|.+.+..++.+++.|...+ .+++++||+||||||||++|+++|+.++.+|+.
T Consensus 69 ~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 69 LIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp HHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 3334445566889999999999999999999999888888877664 677899999999999999999999999999999
Q ss_pred EccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC--CCCCeEE
Q 039866 230 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--SDDRIKV 307 (418)
Q Consensus 230 i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~viv 307 (418)
++++++...+.|.....++.+|..+....|+||||||||.+.+.+..+... ...+.+.+++..+++.. ...+++|
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~~~v~v 224 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHE---SSRRIKTEFLVQLDGATTSSEDRILV 224 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------C---HHHHHHHHHHHHHHC----CCCCEEE
T ss_pred EehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcch---HHHHHHHHHHHHHhcccccCCCCEEE
Confidence 999999999999999999999999999999999999999998766432222 22344445555555433 3468999
Q ss_pred EEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 308 IAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 308 I~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
|+|||.++.+++++++ ||+..+.++.|+.++|.++++.++...... .+.++..++..+.||++++|..+|+.|...+
T Consensus 225 I~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 225 VGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP 302 (357)
T ss_dssp EEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred EEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999998765443 3456888999999999999999999999998
Q ss_pred HHhC------------CCCccHHHHHHHHHHHHHhhh
Q 039866 387 LRRD------------ATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 387 ~~~~------------~~~It~~d~~~Al~~~~~~~~ 411 (418)
+++. ...|+.+||..|+..+.++..
T Consensus 303 ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 303 IRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp HHHCCC----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCC
Confidence 8743 357999999999999987543
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=270.93 Aligned_cols=252 Identities=34% Similarity=0.600 Sum_probs=200.2
Q ss_pred ccccccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 153 AMEVDEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 153 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
...+...+...|++|+|++.+++.+.+.+..+..+++.|...+ .+++++||+||||||||++|+++|..++.+|+.++|
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 3344556778999999999999999999999988888887776 567899999999999999999999999999999999
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
+++...+.|.....++.+|..+....|+||||||||.++..+..........++..++..++.... ....+++||+|||
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~vI~atn 260 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATN 260 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEEEEEecC
Confidence 999999999999999999999999999999999999998766443333334444555555543322 1246799999999
Q ss_pred CCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--
Q 039866 313 RADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-- 389 (418)
Q Consensus 313 ~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~-- 389 (418)
.++.+++++++ ||...+.++.|+.++|..|++.++...... .+..+..++..+.|+++++|..+|+.|...+.++
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999998765443 3456788999999999999999999999999887
Q ss_pred ----------CCCCccHHHHHHHHHHHHH
Q 039866 390 ----------DATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 390 ----------~~~~It~~d~~~Al~~~~~ 408 (418)
....|+.+||..++..+.+
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 3457999999999987654
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=5.4e-35 Score=315.34 Aligned_cols=253 Identities=40% Similarity=0.739 Sum_probs=217.5
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 236 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~ 236 (418)
...+...|++++|++++++.+.+.+..++.+++.|..+++.++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q 039866 237 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 316 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~ 316 (418)
..|+|+.+..++.+|..++...|+||||||||.++..+.......+....+.+.++|..+++.....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998877544333334556777888888888877789999999999999
Q ss_pred CChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCC-----
Q 039866 317 LDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA----- 391 (418)
Q Consensus 317 l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~----- 391 (418)
+|++++|||||+..++|+.|+.++|..|++.+++...+..++++..++..+.||++++|..+|+.|...|.++.-
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~ 708 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988888888999999999999999999999999999987741
Q ss_pred --------------------CCccHHHHHHHHHHHHHh
Q 039866 392 --------------------TEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 392 --------------------~~It~~d~~~Al~~~~~~ 409 (418)
..|+.+||.+|+..+.++
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 746 (806)
T 1ypw_A 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp ------------------CCTTTTTTSSCCCCCC----
T ss_pred hhhhhcccccccccccccccCccCHHHHHHHHHhCCCC
Confidence 258888888887666553
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=2.1e-28 Score=263.97 Aligned_cols=248 Identities=40% Similarity=0.716 Sum_probs=217.3
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
..+.+.|++|+|++.+++.|.+.+..++.++++|..+++.++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q 039866 238 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 317 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l 317 (418)
.+.|+....++.+|..+....|+++||||+|.+++.+...... ...+.+.+++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSH---HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccch---HHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876433222 2233444555555666666789999999999999
Q ss_pred ChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCC------
Q 039866 318 DPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA------ 391 (418)
Q Consensus 318 ~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~------ 391 (418)
++++.+++||+..+.++.|+.++|.+|++.++..+.+..+.++..++..+.|++++++..+|.+|...+.++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999998888888999999999999999999999999998876543
Q ss_pred -----------CCccHHHHHHHHHHHHH
Q 039866 392 -----------TEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 392 -----------~~It~~d~~~Al~~~~~ 408 (418)
..++.+|+..++....+
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCc
Confidence 24667788887776544
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=1.2e-26 Score=222.27 Aligned_cols=178 Identities=20% Similarity=0.345 Sum_probs=135.4
Q ss_pred cCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHH----HhCCCeEEEEcCCCc
Q 039866 194 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA----KEKSPCIIFIDEIDA 269 (418)
Q Consensus 194 ~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~ 269 (418)
.+.++|.++|||||||||||++|+++|+.++.+++.++++++.+.++|..+..++.+|..+ +...|+||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3567888999999999999999999999999999999999999999999999999999888 577899999999999
Q ss_pred ccccCCCCCC--CCCHHHHHHHHHHHHhhc--------CCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHH
Q 039866 270 IGTKRFDSEV--SGDREVQRTMLELLNQLD--------GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEE 339 (418)
Q Consensus 270 l~~~~~~~~~--~~~~~~~~~l~~ll~~~~--------~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~ 339 (418)
+++.+.+... .....++..|+++++... ......+++||+|||.++.++++++|+|||+..+.+ |+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 9875432111 123356677778776332 222456799999999999999999999999988874 6999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHH
Q 039866 340 ARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKA 377 (418)
Q Consensus 340 ~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 377 (418)
+|.+|++.++... +++...++..+.||++++|..
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999887643 466888999899999887753
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=4.9e-23 Score=198.12 Aligned_cols=223 Identities=20% Similarity=0.244 Sum_probs=167.8
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCC---CCceeecCCCCcHHHHHHHHHHHh-------CCcEEEEccch
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPP---KGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGPQ 234 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~---~~vLl~Gp~GtGKT~lakala~~l-------~~~~~~i~~s~ 234 (418)
.+|+|++.+++.+.+.+.... .+..+.+.|+.++ .++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 379999999999999887654 3556666665543 459999999999999999999987 34899999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 235 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 235 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
+...+.|.....+..+|..+ .++||||||+|.+++.+.+ ...+...+..|+.+++.. ..++++|+++|.+
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~ 179 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN-----RDDLVVILAGYAD 179 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC-----CCCEEEEEeCChH
Confidence 99999998888888888776 3569999999999765432 223566777777777752 3577899999865
Q ss_pred C-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHH-------cCCCcHHHHHHHHHH
Q 039866 315 D-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARS-------TDDFNGAQLKAVCVE 381 (418)
Q Consensus 315 ~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~-------~~g~s~~di~~l~~~ 381 (418)
. .++|++++ ||+..+.|++|+.+++..|++.++...... .+..+..++.. ....+++++.+++..
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 3 35799999 999999999999999999999999876544 22234455554 233458999999999
Q ss_pred HHHHHHHh----CCCCccHHHHH
Q 039866 382 AGMLALRR----DATEVNHEDFN 400 (418)
Q Consensus 382 A~~~A~~~----~~~~It~~d~~ 400 (418)
|...+..+ ....++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 88766544 33555655554
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=1.4e-22 Score=199.73 Aligned_cols=220 Identities=20% Similarity=0.262 Sum_probs=160.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccchhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQ 237 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s~l~~ 237 (418)
|...|++++|++.+++.+....... ..|..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4455999999999988865544211 223345678999999999999999999999964 888888766433
Q ss_pred hhhcc-------------------------------------------------hHHHHHHHHHHHHh-----C----CC
Q 039866 238 MFIGD-------------------------------------------------GAKLVRDAFQLAKE-----K----SP 259 (418)
Q Consensus 238 ~~~g~-------------------------------------------------~~~~~~~~~~~a~~-----~----~~ 259 (418)
.+.+. ....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 22111 12233334433322 1 26
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe-----------CCCCCCChhhhCCCCce
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT-----------NRADILDPALMRSGRLD 328 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt-----------n~~~~l~~~l~r~~Rf~ 328 (418)
+||||||+|.+ +.+.++.|+.+++. ....++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 79999999999 45666666666543 22345444443 347789999999 996
Q ss_pred eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 329 RKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 329 ~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
. +.|++|+.+++..+++.++...... ++..+..++..+.+.+++++.++|..|...|..++...|+.+|+.+|+..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 8999999999999999888764433 233467788888756899999999999999999999999999999999863
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=1.5e-21 Score=190.35 Aligned_cols=219 Identities=19% Similarity=0.194 Sum_probs=170.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
..+.+|++++|++..++.+...+..... .-.++.++||+||||||||++|+++|+.++.+|+.++|+.+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-- 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-- 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--
Confidence 3455899999999999999988854321 114567899999999999999999999999999999997653
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC-------------CCCCCe
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-------------SSDDRI 305 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-------------~~~~~v 305 (418)
..+.+...+.. ...+++|||||||.+ ....+..|+..++..... ....++
T Consensus 93 ----~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 ----KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 12222233322 245689999999999 567888888888764310 001248
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~ 384 (418)
++|++||....+++++++ ||+..+.+++|+.+++..+++.++...... .+.....++..+.| +++.+.+++..+..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 899999999999999999 999999999999999999999988766543 23345667775554 67899999999988
Q ss_pred HHHHhCCCCccHHHHHHHHHHHH
Q 039866 385 LALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
.|...+...|+.+++..++....
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHHHT
T ss_pred HHHhhcCCccCHHHHHHHHHHhC
Confidence 88888888899999999887643
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2e-22 Score=204.70 Aligned_cols=233 Identities=20% Similarity=0.218 Sum_probs=173.2
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccchhhh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQ 237 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~l~~ 237 (418)
|...|++|+|++++++.+...+... ..|..+++++||+||||||||++|+++|+.++ .+|+.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4567899999999999988766322 33556788999999999999999999999998 9999999999999
Q ss_pred hhhcchHHHHHHHHHHH---HhCCCeEEEEcCCCcccccCCCCCCCC---------------------------------
Q 039866 238 MFIGDGAKLVRDAFQLA---KEKSPCIIFIDEIDAIGTKRFDSEVSG--------------------------------- 281 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~--------------------------------- 281 (418)
.+.|+.+. ++.+|..+ +...|+||||||+|.+++.+.....++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 88999998 778899999999999987664321000
Q ss_pred ----------------------------------------CH------------------------------HHH-----
Q 039866 282 ----------------------------------------DR------------------------------EVQ----- 286 (418)
Q Consensus 282 ----------------------------------------~~------------------------------~~~----- 286 (418)
.+ ++.
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~ 262 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQ 262 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC---------------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhh
Confidence 00 000
Q ss_pred -----------------------------------------------HHHHHHHHhhcCCCCCCCeEEEEEeCC------
Q 039866 287 -----------------------------------------------RTMLELLNQLDGFSSDDRIKVIAATNR------ 313 (418)
Q Consensus 287 -----------------------------------------------~~l~~ll~~~~~~~~~~~vivI~ttn~------ 313 (418)
..+..++..++. +..++ +|++||+
T Consensus 263 i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe--~~~~~-~il~tn~~~~~i~ 339 (456)
T 2c9o_A 263 LMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALES--SIAPI-VIFASNRGNCVIR 339 (456)
T ss_dssp --------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTS--TTCCE-EEEEECCSEEECB
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhc--cCCCE-EEEecCCcccccc
Confidence 011122222222 12234 4444433
Q ss_pred -------CCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHc-CCCcHHHHHHHHHHHHH
Q 039866 314 -------ADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARST-DDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 314 -------~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~-~g~s~~di~~l~~~A~~ 384 (418)
+..++|++++ ||.. +.|++|+.++..++++..+...... ++..+..++..+ .| +++....++..|..
T Consensus 340 ~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~ 415 (456)
T 2c9o_A 340 GTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANL 415 (456)
T ss_dssp TTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHH
T ss_pred ccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 6789999999 9975 6999999999999999887643332 223355667666 44 78889999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHH
Q 039866 385 LALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
.|..+++..|+.+|+.+|+..+..
T Consensus 416 ~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 416 LAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HHhhcCCCccCHHHHHHHHHHhcC
Confidence 999999999999999999877643
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.88 E-value=3e-21 Score=186.74 Aligned_cols=217 Identities=20% Similarity=0.251 Sum_probs=166.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
..+.+|++++|.+..++.+...+..... .+ .++.++||+||||||||++|+++++.++.+++.++|+.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA-------RK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc-------cC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 3456899999999999999887743211 11 35678999999999999999999999999999999876532
Q ss_pred hhcchHHHHHHHHHHHHh--CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC-----CC--------CCC
Q 039866 239 FIGDGAKLVRDAFQLAKE--KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-----FS--------SDD 303 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-----~~--------~~~ 303 (418)
... ++..... ..+++|||||+|.+ +...+..++.+++.... .. ...
T Consensus 77 -----~~~---l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGD---LAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHH---HHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHH---HHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 112 2222222 45689999999998 55677888888876420 00 113
Q ss_pred CeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHH
Q 039866 304 RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEA 382 (418)
Q Consensus 304 ~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A 382 (418)
++++|++||.+..+++++.+ ||+..+.+++|+.+++..++..++...... ++..+..++..+.| +++.+.+++..+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 57899999999999999998 998899999999999999999988765443 23346677788765 578999999988
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHH
Q 039866 383 GMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 383 ~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
...|...+...|+.+++..++...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 877766677789999998887664
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.86 E-value=2.5e-23 Score=226.59 Aligned_cols=339 Identities=17% Similarity=0.221 Sum_probs=202.9
Q ss_pred chhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcc
Q 039866 13 DDQLSSMTTDDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDG 92 (418)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (418)
.+.+.+..+....+|++++++++..+++++..+..+|+.++..+..++...+++......++ ..++.+++..+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 489 (854)
T 1qvr_A 417 REALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE-------LAERQYDLNRA 489 (854)
T ss_dssp HHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTTTCHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHhcccHHHH
Confidence 34444444555667788899999999999999999999998887777666666544222211 11122222222
Q ss_pred cccccccccCCceEEEeecccccccccCCCCCCCCCEEEEcCC------cceeeecCCcchhhhhhccccccCCCCCCcc
Q 039866 93 ANIDLDSQRKGKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKD------SYLILDTLPSEYDSRVKAMEVDEKPTEDYND 166 (418)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (418)
+.+.+...+.-...+. ..... . ..++++..+-+ .+.-|..+|...........+...+...+.+
T Consensus 490 ~~~~~~~~~~~~~~~~-----~~~~~-~----~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~ 559 (854)
T 1qvr_A 490 AELRYGELPKLEAEVE-----ALSEK-L----RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKR 559 (854)
T ss_dssp HHHHTTHHHHHHHHHH-----HHHHH-S----SSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHH-----HHHhh-h----cccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcc
Confidence 2222211110000000 00000 0 00000000000 0001112221110000000011112223568
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCC----CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh-
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGV----RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM- 238 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~- 238 (418)
|+|++.+++.+...+... +.|+ .|..++||+||||||||++|+++|+.+ +.+|+.++|+++...
T Consensus 560 viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631 (854)
T ss_dssp SCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred cCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh
Confidence 999999999999988432 1222 233479999999999999999999998 789999999877543
Q ss_pred ----hhcchHHH-----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC------C
Q 039866 239 ----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD------D 303 (418)
Q Consensus 239 ----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~------~ 303 (418)
.+|...+. .+.++..++..+++|||||||+.+ ++++++.|+++++........ .
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEeccC
Confidence 22221111 134556666777899999999998 778999999999865322222 3
Q ss_pred CeEEEEEeCC--------------------------CCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC-----
Q 039866 304 RIKVIAATNR--------------------------ADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----- 352 (418)
Q Consensus 304 ~vivI~ttn~--------------------------~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----- 352 (418)
+++||+|||. ...+.|+|++ ||+.++.|++|+.+++..|++.++..+
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999997 2367899998 999999999999999999998877532
Q ss_pred --CCC---CCCCHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHh
Q 039866 353 --TVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 353 --~~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~~A~~~ 389 (418)
... ++..+..|+.... .+..++|+++++.+...+..+
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 111 2233556666554 567789999998887766533
No 36
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.85 E-value=7.5e-20 Score=180.54 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=165.0
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccc
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGP 233 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s 233 (418)
..++++|.+..++.+...+...+.. ..+.+++|+||||||||++++++++.+ +.+++.++|.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4478999999999999877543221 456789999999999999999999988 7889999986
Q ss_pred hhhhh------h----------hcc-hHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh
Q 039866 234 QLVQM------F----------IGD-GAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 234 ~l~~~------~----------~g~-~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 295 (418)
..... . .|. .......++...... .|.||+|||+|.+...+ ..+..+..+++.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 53211 0 111 122234444444333 47899999999984321 145677788876
Q ss_pred hcCCCCCCCeEEEEEeCCC---CCCChhhhCCCCcee-EEEcCCCCHHHHHHHHHHHhhc----CCCCCCCCHHHHHHHc
Q 039866 296 LDGFSSDDRIKVIAATNRA---DILDPALMRSGRLDR-KIELPHPSEEARARILQIHSRK----MTVHPDVNFEELARST 367 (418)
Q Consensus 296 ~~~~~~~~~vivI~ttn~~---~~l~~~l~r~~Rf~~-~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~la~~~ 367 (418)
........++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.+++..++...+.. ..+ .+.....++..+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHH
Confidence 6544324678899999987 678999998 8875 8999999999999999988764 122 233466677766
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 368 D---DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 368 ~---g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
. | .++.+.++|..|...|...+...|+.+|+..|+..+...
T Consensus 236 ~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 236 AREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 5 5 578888999999999988888999999999999887543
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=6.8e-21 Score=182.73 Aligned_cols=240 Identities=25% Similarity=0.300 Sum_probs=160.0
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhc-CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhcc
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD 242 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g~ 242 (418)
++|+|++.+++.+...+..++..+...... +..++.++||+||||||||++|+++|+.++.+++.++|+.+.. .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 468999999999998876532221111000 0135678999999999999999999999999999999998865 45554
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEcCCCcccccCCCCCCCC-CHHHHHHHHHHHHhhcC-----CCCCCCeEEEEE
Q 039866 243 G-AKLVRDAFQLA-----KEKSPCIIFIDEIDAIGTKRFDSEVSG-DREVQRTMLELLNQLDG-----FSSDDRIKVIAA 310 (418)
Q Consensus 243 ~-~~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~-----~~~~~~vivI~t 310 (418)
. ...++.++..+ ....++||||||+|.+.+......... ...+++.|+.+++.... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 34455555422 112357999999999976543221110 11235667777764210 012346788888
Q ss_pred e----CCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHh-----------hcCCCC---CCCCHHHHHHHc-----
Q 039866 311 T----NRADILDPALMRSGRLDRKIELPHPSEEARARILQIHS-----------RKMTVH---PDVNFEELARST----- 367 (418)
Q Consensus 311 t----n~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~-----------~~~~~~---~~~~~~~la~~~----- 367 (418)
+ +.+..+++++++ ||+..+.|++|+.+++..|++... ...... ++..+..++..+
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4 567789999998 999889999999999999998311 111211 223355666655
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHh-----CC-CCccHHHHHHHHHHH
Q 039866 368 --DDFNGAQLKAVCVEAGMLALRR-----DA-TEVNHEDFNEGIIQV 406 (418)
Q Consensus 368 --~g~s~~di~~l~~~A~~~A~~~-----~~-~~It~~d~~~Al~~~ 406 (418)
.+..++.+.++|..+...+..+ +. ..|+.+|+.+++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 2457889999998877544322 11 249999999998754
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=2e-21 Score=201.06 Aligned_cols=226 Identities=21% Similarity=0.303 Sum_probs=147.2
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh----
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ---- 237 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~---- 237 (418)
..+++++|++++++.+.+.+.....+ ..+ ++.+++|+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 34567999999999998776432211 111 4557999999999999999999999999999999876543
Q ss_pred -----hhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CC--------CC
Q 039866 238 -----MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FS--------SD 302 (418)
Q Consensus 238 -----~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~--------~~ 302 (418)
.++|...+.+...|..+....| |+||||||.+.+.+. .+.+..|+++++.... +. ..
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4566666666677777755555 999999999975431 1234555565543211 11 11
Q ss_pred CCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh-----cCCCC------CCCCHHHHHHHcCC-C
Q 039866 303 DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSR-----KMTVH------PDVNFEELARSTDD-F 370 (418)
Q Consensus 303 ~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~------~~~~~~~la~~~~g-~ 370 (418)
.++++|+|||+++.++|+|++ ||. +|.|+.|+.+++..|++.++. ...+. ++..+..++..+.+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 995 799999999999999988762 22221 12224444443332 2
Q ss_pred cHH----HHHHHHHHHHHHHHHh--CCCCccHHHHHHHHHH
Q 039866 371 NGA----QLKAVCVEAGMLALRR--DATEVNHEDFNEGIIQ 405 (418)
Q Consensus 371 s~~----di~~l~~~A~~~A~~~--~~~~It~~d~~~Al~~ 405 (418)
..+ .|..+|..|...+... +...|+.+|+.+++..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 334 4555666655555544 3457999999998754
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.84 E-value=4.5e-19 Score=160.78 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=149.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccc
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGP 233 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s 233 (418)
.++..|++++|.+..++.+...+... .+.+++|+||||||||++|+++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 45567899999999999998877421 23359999999999999999999976 4567888876
Q ss_pred hhhhhhhcchHHHHHHHHHHHH------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAK------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
..... ..+...+.... ...+.+|+|||+|.+ ....+..+..+++.. ..++.+
T Consensus 78 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~~~~~ 135 (226)
T 2chg_A 78 DERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----SKSCRF 135 (226)
T ss_dssp CTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTEEE
T ss_pred cccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----CCCCeE
Confidence 54321 11222222221 245789999999998 445667777777752 346788
Q ss_pred EEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 308 IAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 308 I~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
|++||.+..+++++.+ |+. .+.+++|+.++...++...+...... ++.....++..+.| .++.+.+++..+...+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 9999999999999998 887 89999999999999999888654433 23345667777665 5667777776665443
Q ss_pred HHhCCCCccHHHHHHHHH
Q 039866 387 LRRDATEVNHEDFNEGII 404 (418)
Q Consensus 387 ~~~~~~~It~~d~~~Al~ 404 (418)
..|+.+|+.+++.
T Consensus 212 -----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----EVVDADTIYQITA 224 (226)
T ss_dssp -----SCBCHHHHHHHHH
T ss_pred -----ceecHHHHHHHhc
Confidence 6899999999875
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.83 E-value=5e-20 Score=181.50 Aligned_cols=234 Identities=22% Similarity=0.294 Sum_probs=157.3
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHh-cC-CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh-hhcc
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQK-LG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGD 242 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~-~g-~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~-~~g~ 242 (418)
.|+|++.+++.+...+............ .+ ..++.++||+||||||||++|+++|+.++.+|+.++|+.+... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999988543322111000 01 1366789999999999999999999999999999999988754 7776
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCCCCCCH---HHHHHHHHHHHhhc----------------C
Q 039866 243 G-AKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEVSGDR---EVQRTMLELLNQLD----------------G 298 (418)
Q Consensus 243 ~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~l~~ll~~~~----------------~ 298 (418)
. ...+..++..+ ....++||||||+|.+.+.+.+.....+. .+++.|+++|+... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 45566666655 33456799999999998776443322221 27788888887210 0
Q ss_pred CCCCCCeEEEEEeCCC----------CC-----------------------------------CChhhhCCCCceeEEEc
Q 039866 299 FSSDDRIKVIAATNRA----------DI-----------------------------------LDPALMRSGRLDRKIEL 333 (418)
Q Consensus 299 ~~~~~~vivI~ttn~~----------~~-----------------------------------l~~~l~r~~Rf~~~i~~ 333 (418)
+-...++++|+++|.. .. +.|+|++ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1123456677776642 11 7899998 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhh-------cCCCC---CCCCHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHhCCC-----
Q 039866 334 PHPSEEARARILQI----HSR-------KMTVH---PDVNFEELAR--STDDFNGAQLKAVCVEAGMLALRRDAT----- 392 (418)
Q Consensus 334 ~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~--~~~g~s~~di~~l~~~A~~~A~~~~~~----- 392 (418)
++|+.+++.+|+.. ++. ..... .+..+..|+. ....+.+++|++++..+...+..+...
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999998875 221 11211 2223455554 233445689999999998888766421
Q ss_pred --CccHHHHHH
Q 039866 393 --EVNHEDFNE 401 (418)
Q Consensus 393 --~It~~d~~~ 401 (418)
.|+.+++.+
T Consensus 334 ~~~I~~~~v~~ 344 (363)
T 3hws_A 334 KVVIDESVIDG 344 (363)
T ss_dssp EEECHHHHTTC
T ss_pred eeEEcHHHHhC
Confidence 366666554
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=3.5e-19 Score=173.96 Aligned_cols=224 Identities=19% Similarity=0.231 Sum_probs=149.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC-------c-----
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------T----- 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~-------~----- 226 (418)
.++.+|++++|++.+++.+...... ..+.++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 4567899999999987765443321 12346999999999999999999998863 2
Q ss_pred ---------------------EEEEccchhhhhhhcchHHHHHHHHHHH---------HhCCCeEEEEcCCCcccccCCC
Q 039866 227 ---------------------FLKLAGPQLVQMFIGDGAKLVRDAFQLA---------KEKSPCIIFIDEIDAIGTKRFD 276 (418)
Q Consensus 227 ---------------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a---------~~~~~~vl~iDEid~l~~~~~~ 276 (418)
++.+..+.....+.|... +...+... ....++||||||+|.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------ 156 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL------ 156 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC------
Confidence 121111111111222100 01111111 1113679999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhhc----CCCC----CCCeEEEEEeCCCC-CCChhhhCCCCceeEEEcCCC-CHHHHHHHHH
Q 039866 277 SEVSGDREVQRTMLELLNQLD----GFSS----DDRIKVIAATNRAD-ILDPALMRSGRLDRKIELPHP-SEEARARILQ 346 (418)
Q Consensus 277 ~~~~~~~~~~~~l~~ll~~~~----~~~~----~~~vivI~ttn~~~-~l~~~l~r~~Rf~~~i~~~~p-~~~~r~~il~ 346 (418)
+...+..|+.+++... .... ..++++|+|+|+.. .+++++++ ||+..+.+++| +.+.+.+|++
T Consensus 157 -----~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 157 -----EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp -----CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 5677888888888631 1111 13788999999755 89999999 99988999999 5777778876
Q ss_pred HHhh-------------------------------cCCCCCCCCHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhCCC
Q 039866 347 IHSR-------------------------------KMTVHPDVNFEELARSTDD---FNGAQLKAVCVEAGMLALRRDAT 392 (418)
Q Consensus 347 ~~~~-------------------------------~~~~~~~~~~~~la~~~~g---~s~~di~~l~~~A~~~A~~~~~~ 392 (418)
..+. .+.++ +..+..++..+.+ .+.+.+.++++.|...|..+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~ 308 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGAT 308 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 5311 11222 2223444443322 26799999999999999989989
Q ss_pred CccHHHHHHHHHHHHHhhh
Q 039866 393 EVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 393 ~It~~d~~~Al~~~~~~~~ 411 (418)
.|+.+|+.+|+..+...+.
T Consensus 309 ~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 309 AVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp BCCHHHHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHHHHHHhhcc
Confidence 9999999999998876553
No 42
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.82 E-value=1e-19 Score=176.92 Aligned_cols=219 Identities=20% Similarity=0.180 Sum_probs=156.0
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh--hhhh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL--VQMF 239 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l--~~~~ 239 (418)
..+++++|++.+++.+...+.. ++++||+||||||||++|+++|+.++.+++.++++.. ...+
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467899999999988776631 3489999999999999999999999999999987421 1112
Q ss_pred hcchHH-HHHHHHHHHHhC--CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC------CCCCCCeEEEEE
Q 039866 240 IGDGAK-LVRDAFQLAKEK--SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG------FSSDDRIKVIAA 310 (418)
Q Consensus 240 ~g~~~~-~~~~~~~~a~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~~~vivI~t 310 (418)
.|.... .....+. .... ..+||||||++.+ ++..++.|++.++.... ...+.++++|+|
T Consensus 89 ~g~~~~~~~~~~~~-~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 89 IGTMIYNQHKGNFE-VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp HEEEEEETTTTEEE-EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred CCceeecCCCCceE-eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 221100 0000000 0000 1269999999998 56788888888886321 112346788899
Q ss_pred eCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-----------------------CCCCHHH
Q 039866 311 TNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-----------------------PDVNFEE 362 (418)
Q Consensus 311 tn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----------------------~~~~~~~ 362 (418)
+|+.+ .+++++++ ||...+.++.|+.+++.+|++.++...... ++.....
T Consensus 157 ~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~ 234 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKY 234 (331)
T ss_dssp ECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHH
T ss_pred cCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHH
Confidence 99654 38999999 998889999999999999999887542111 1111233
Q ss_pred HHHHc-------------------CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 363 LARST-------------------DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 363 la~~~-------------------~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
++... .|.+++.+..+++.|...|..+++..|+.+|+.+++..+...
T Consensus 235 i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 235 IIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 33211 255899999999999999999999999999999999988653
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=6.4e-20 Score=173.45 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=138.4
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhcc
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD 242 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g~ 242 (418)
...++|++..++.+....... ...+...+..++.++||+||||||||++|+++|+.++.+|+.+++++... ...+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 456889998888877642111 11233334467788999999999999999999999999999999875321 11122
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCCeEEEEEeCCCCCCCh-h
Q 039866 243 GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRADILDP-A 320 (418)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~vivI~ttn~~~~l~~-~ 320 (418)
....++.+|..+....+++|||||+|.+++.+..+. .....+++.|..+ ++... ...+++||+|||.++.+++ .
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhcchhh
Confidence 234567788888777889999999999975542211 1123333333333 33322 3457889999999888877 5
Q ss_pred hhCCCCceeEEEcCCCCH-HHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCC----cHHHHHHHHHHHH
Q 039866 321 LMRSGRLDRKIELPHPSE-EARARILQIHSRKMTVHPDVNFEELARSTDDF----NGAQLKAVCVEAG 383 (418)
Q Consensus 321 l~r~~Rf~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~----s~~di~~l~~~A~ 383 (418)
+.+ ||...+.+|+++. ++...++.. ...+ .+..+..++..+.|+ ..+++.+++..|.
T Consensus 185 l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 185 MLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp CTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 555 9999999987765 444444443 2223 345678888888886 4566666665544
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.82 E-value=7.1e-20 Score=197.13 Aligned_cols=199 Identities=16% Similarity=0.267 Sum_probs=146.9
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCC----CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 236 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~ 236 (418)
..+++|++.+++.+...+.... .|.. |..++||+||||||||++|+++|+.+ +.+|++++|+++.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred hCcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 4679999999999999885432 2222 22269999999999999999999997 6899999999998
Q ss_pred hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC------CCCCeEEEEE
Q 039866 237 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS------SDDRIKVIAA 310 (418)
Q Consensus 237 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~vivI~t 310 (418)
..+... ...++..++..+++|||||||+.+ ++++++.|+++++...... ...++++|+|
T Consensus 562 ~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 562 EKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp SSCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred cccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 876554 223455666777899999999998 7789999999999754322 2247899999
Q ss_pred eCCCCC------------CChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC-------CCC---CCCCHHHHHHHcC
Q 039866 311 TNRADI------------LDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM-------TVH---PDVNFEELARSTD 368 (418)
Q Consensus 311 tn~~~~------------l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~~ 368 (418)
||.+.. +.|+|++ ||+.++.|++|+.+++..|++.++..+ ... ++.....++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 997553 8899998 999999999999999999998877542 111 2223455555322
Q ss_pred --CCcHHHHHHHHHHHHHHHH
Q 039866 369 --DFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 369 --g~s~~di~~l~~~A~~~A~ 387 (418)
.+..++|++++..+...+.
T Consensus 705 ~~~~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp CTTTTTTTHHHHHHHHTHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHH
Confidence 3455788888887665554
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.82 E-value=1.9e-19 Score=181.72 Aligned_cols=206 Identities=23% Similarity=0.271 Sum_probs=149.3
Q ss_pred CCCCCCccccCcHHHH---HHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 159 KPTEDYNDIGGLEKQI---QELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..+.+|++++|+++.+ +.+...+... ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3456899999999999 6777766321 22579999999999999999999999999999987543
Q ss_pred hhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 236 VQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
. ...++.++..+. ...++||||||||.+. ...+..|+..++. +.+++|++|
T Consensus 87 ~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-----------~~~q~~LL~~le~-------~~v~lI~at 141 (447)
T 3pvs_A 87 G-------VKEIREAIERARQNRNAGRRTILFVDEVHRFN-----------KSQQDAFLPHIED-------GTITFIGAT 141 (447)
T ss_dssp C-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEEEEEE
T ss_pred C-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-----------HHHHHHHHHHHhc-------CceEEEecC
Confidence 2 223344444443 3467899999999993 3445667777764 346677766
Q ss_pred --CCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCC-------CC-CCCCHHHHHHHcCCCcHHHHHHHHHH
Q 039866 312 --NRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT-------VH-PDVNFEELARSTDDFNGAQLKAVCVE 381 (418)
Q Consensus 312 --n~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-------~~-~~~~~~~la~~~~g~s~~di~~l~~~ 381 (418)
|+...+++++++ |+. ++.|++|+.+++..+++..+.... .. ++..+..++..+.| ..+.+.+++..
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 444589999999 885 788999999999999999887522 11 22336677777665 67888899988
Q ss_pred HHHHHHHh--CCCCccHHHHHHHHHHH
Q 039866 382 AGMLALRR--DATEVNHEDFNEGIIQV 406 (418)
Q Consensus 382 A~~~A~~~--~~~~It~~d~~~Al~~~ 406 (418)
|...+... +...||.+++.+++...
T Consensus 218 a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 218 MADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHhcccccCCCCccCHHHHHHHHhhh
Confidence 88776423 44579999999887643
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.81 E-value=2.6e-19 Score=172.05 Aligned_cols=207 Identities=20% Similarity=0.284 Sum_probs=146.7
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh--
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-- 238 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~-- 238 (418)
..+++|++.+++.+...+...... . ...-.|..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~---~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAG---L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHT---C-SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcC---C-CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 356889999999999988543110 0 0001233469999999999999999999988 567999999876432
Q ss_pred ---hhcchHHH-----HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC------CCC
Q 039866 239 ---FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------DDR 304 (418)
Q Consensus 239 ---~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~ 304 (418)
++|...+. ...+.......+++||||||+|.+ ++.++..|+++++....... -.+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 22221100 023444555566789999999998 67889999999986432211 136
Q ss_pred eEEEEEeCC--------------------------CCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCC-----
Q 039866 305 IKVIAATNR--------------------------ADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----- 353 (418)
Q Consensus 305 vivI~ttn~--------------------------~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----- 353 (418)
+++|+|||. ...++|+|++ ||+..+.+++|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 779999998 4478899998 9999999999999999999988775421
Q ss_pred --CC---CCCCHHHHHHHcC--CCcHHHHHHHHHHHHHHHH
Q 039866 354 --VH---PDVNFEELARSTD--DFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 354 --~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~~A~ 387 (418)
.. ++..+..++.... ..++++|++++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 2233556666554 4567899999988777654
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.81 E-value=2.3e-19 Score=193.26 Aligned_cols=199 Identities=18% Similarity=0.261 Sum_probs=148.1
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCC----CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh--
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-- 238 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~-- 238 (418)
.+++|++.+++.+...+.. ...|+. |..++||+||||||||++|+++|+.++.++++++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 4588999999999887732 233443 33469999999999999999999999999999999988653
Q ss_pred ----------hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC------C
Q 039866 239 ----------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------D 302 (418)
Q Consensus 239 ----------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~ 302 (418)
|+|.... ..+...++..+++|||||||+.+ ++++++.|+++++....... -
T Consensus 530 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp CSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred HhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 3332222 23566677778899999999998 77899999999986432211 1
Q ss_pred CCeEEEEEeCCCC-------------------------CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC-----
Q 039866 303 DRIKVIAATNRAD-------------------------ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----- 352 (418)
Q Consensus 303 ~~vivI~ttn~~~-------------------------~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----- 352 (418)
.+++||+|||... .++|+|++ ||+.+|.|++|+.+++..|++.++..+
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999754 67899998 999999999999999999999887632
Q ss_pred ----CCC-CCCCHHHHHHHc--CCCcHHHHHHHHHHHHHHH
Q 039866 353 ----TVH-PDVNFEELARST--DDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 353 ----~~~-~~~~~~~la~~~--~g~s~~di~~l~~~A~~~A 386 (418)
.+. ++.....++... ..+..+.+..+++.+...+
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 111 222345555533 2345688888887776643
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.80 E-value=1e-18 Score=176.32 Aligned_cols=220 Identities=17% Similarity=0.245 Sum_probs=154.5
Q ss_pred CCCCCcccc-CcHHHH--HHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEc
Q 039866 160 PTEDYNDIG-GLEKQI--QELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLA 231 (418)
Q Consensus 160 ~~~~~~~i~-G~~~~~--~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~ 231 (418)
|..+|++++ |..+.. ..+...+.. .+ . +++++|+||||||||++|+++++.+ +.++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKH----------PG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHS----------TT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhC----------CC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456889987 654433 233322211 11 1 5689999999999999999999988 78899999
Q ss_pred cchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 039866 232 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 311 (418)
Q Consensus 232 ~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~tt 311 (418)
+..+...+.+.........|.......+.||||||++.+.. ....+..++.+++.+.. .+..+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~~---~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHHT---TTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEEEC
Confidence 98876655433222111223333233678999999999853 22456677777765432 2345555555
Q ss_pred CCCCC---CChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 039866 312 NRADI---LDPALMRSGRLD--RKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 312 n~~~~---l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 385 (418)
+.+.. +++.+++ ||. ..+.+++|+.+++..|++..+....+. ++..+..++..+.| +++++..++..+...
T Consensus 236 ~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_dssp SCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55543 8899998 886 689999999999999999888644433 23347788888765 789999999999988
Q ss_pred HHHhCCCCccHHHHHHHHHHHH
Q 039866 386 ALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 386 A~~~~~~~It~~d~~~Al~~~~ 407 (418)
|...+. .||.+++.+++....
T Consensus 313 a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 313 KETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHhCC-CCCHHHHHHHHHHHh
Confidence 876654 699999999987664
No 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.80 E-value=8.7e-19 Score=173.22 Aligned_cols=213 Identities=18% Similarity=0.207 Sum_probs=154.5
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----------CCcEEEEccc
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----------NATFLKLAGP 233 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----------~~~~~~i~~s 233 (418)
++++|.+..++.+...+...... ..+++++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 68999999999999877543221 356689999999999999999999987 8899999987
Q ss_pred hhh-h----------hh-------hcch-HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHH-HHHHH
Q 039866 234 QLV-Q----------MF-------IGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT-MLELL 293 (418)
Q Consensus 234 ~l~-~----------~~-------~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~-l~~ll 293 (418)
... . .+ .|.. ...+..++..+....+ ||+|||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 543 1 11 0111 2334444554444444 99999999985321 1233 44444
Q ss_pred HhhcCCCCCCCeEEEEEeCCC---CCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhc----CCCCCCCCHHHHHHH
Q 039866 294 NQLDGFSSDDRIKVIAATNRA---DILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK----MTVHPDVNFEELARS 366 (418)
Q Consensus 294 ~~~~~~~~~~~vivI~ttn~~---~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~la~~ 366 (418)
... .++.+|++||.+ ..+++.+.+ ||...+.|++|+.++..+++..++.. ..+ .+..+..++..
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHH
Confidence 332 678899999987 678999998 88779999999999999999988763 222 23335666666
Q ss_pred cCC--CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 367 TDD--FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 367 ~~g--~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
+.+ ..++.+.++|..|...|. +...|+.+|+..++..+..
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 651 246778889998888775 5678999999999988764
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=5.3e-18 Score=155.53 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=146.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc------------
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 226 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------ 226 (418)
..+..|++++|.+..++.+...+... ..++.++|+||||||||++++++++.+...
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567889999999999998877421 234579999999999999999999987432
Q ss_pred ------------EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHH
Q 039866 227 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 290 (418)
Q Consensus 227 ------------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 290 (418)
++.++... ......+..++..+. ...+.+|+|||+|.+ +...++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHHHHHHH
Confidence 12222111 011223344444432 234689999999998 455666666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCC
Q 039866 291 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDD 369 (418)
Q Consensus 291 ~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 369 (418)
.+++. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..+++..++...... .+.....++..+.|
T Consensus 148 ~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 148 KTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp HHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 66653 23578899999998899999988 76 689999999999999999888754433 23346678888876
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 370 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 370 ~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
.++.+..++..|...+ ...|+.+|+.+++
T Consensus 220 -~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 -SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp -CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred -CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 7889999998875433 3489999999875
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.79 E-value=1.7e-18 Score=167.77 Aligned_cols=219 Identities=15% Similarity=0.217 Sum_probs=149.3
Q ss_pred CCCCCcccc-Cc--HHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 160 PTEDYNDIG-GL--EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 160 ~~~~~~~i~-G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
+..+|++++ |. ..+...+...+..+ + ..+.+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456788886 53 34444444433221 1 245689999999999999999999988 8999999998
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
++...+.+.........|..... .+++|||||++.+.. ....+..++.+++.... .+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~~---~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLYL---LEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHHH---TTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 88766554432221122222222 367999999999853 22456667777665421 234566666666
Q ss_pred CC---CCChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHH--
Q 039866 314 AD---ILDPALMRSGRLD--RKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML-- 385 (418)
Q Consensus 314 ~~---~l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~-- 385 (418)
+. .+++++.+ ||. ..+.+++ +.+++..|++.++...... ++..+..++..+ | ..+++..++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCH
Confidence 65 68999998 886 6899999 9999999999998755443 233467788888 4 678888888877655
Q ss_pred -HHH-hCCCCc-cHHHHHHHHHHHH
Q 039866 386 -ALR-RDATEV-NHEDFNEGIIQVQ 407 (418)
Q Consensus 386 -A~~-~~~~~I-t~~d~~~Al~~~~ 407 (418)
++. .+...| +.+++.+++....
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHHh
Confidence 111 223457 8888888887643
No 52
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.79 E-value=9.7e-19 Score=169.39 Aligned_cols=204 Identities=17% Similarity=0.165 Sum_probs=139.4
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
+..+.+|++++|++++++.+...+... ..++.+|++||||||||++|+++|+.++.+++.++++...
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 345678999999999999999887521 3455688899999999999999999999999999987642
Q ss_pred hhhcchHHHHHHHHHH-HHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 238 MFIGDGAKLVRDAFQL-AKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 238 ~~~g~~~~~~~~~~~~-a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
...++..+.. +.. ..+.||+|||+|.+. ..+.++.|+.+++... .++.+|++||
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~----------~~~~~~~L~~~le~~~-----~~~~iI~~~n 144 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG----------LAESQRHLRSFMEAYS-----SNCSIIITAN 144 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG----------GHHHHHHHHHHHHHHG-----GGCEEEEEES
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC----------cHHHHHHHHHHHHhCC-----CCcEEEEEeC
Confidence 2233333333 222 156899999999993 1567788888887642 4678899999
Q ss_pred CCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHh-------hcCCCC-CC-CCHHHHHHHcCCCcHHHHHHHHHHHH
Q 039866 313 RADILDPALMRSGRLDRKIELPHPSEEARARILQIHS-------RKMTVH-PD-VNFEELARSTDDFNGAQLKAVCVEAG 383 (418)
Q Consensus 313 ~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~-------~~~~~~-~~-~~~~~la~~~~g~s~~di~~l~~~A~ 383 (418)
.+..+++++++ ||. .+.|++|+.+++.+|+.... ....+. ++ ..+..++..+.|. .+++.+.+..+.
T Consensus 145 ~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~~~L~~~~ 220 (324)
T 3u61_B 145 NIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTIGELDSYS 220 (324)
T ss_dssp SGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHHHHHHHHG
T ss_pred CccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHHHHHHHHh
Confidence 99999999999 894 79999999998776654432 222222 22 4466777776653 444555555443
Q ss_pred HHHHHhCCCCccHHHHHHHHHH
Q 039866 384 MLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 384 ~~A~~~~~~~It~~d~~~Al~~ 405 (418)
....|+.+++..++..
T Consensus 221 ------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 221 ------SKGVLDAGILSLVTND 236 (324)
T ss_dssp ------GGTCBCC---------
T ss_pred ------ccCCCCHHHHHHHhCC
Confidence 2345787777765543
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=2.2e-17 Score=160.78 Aligned_cols=219 Identities=20% Similarity=0.245 Sum_probs=160.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.....|++++|++.+++.+...+..... .+ .++.+++|+||||||||++++++|..++.++...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 4455788999999998888776643211 11 35568999999999999999999999998887776554321
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC-----CC--------CCCe
Q 039866 239 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-----SS--------DDRI 305 (418)
Q Consensus 239 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-----~~--------~~~v 305 (418)
...+..++.. ...+.|+||||++.+. ..+++.++..+...... .. ...+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1122222222 2345799999999983 34556665555432100 00 1246
Q ss_pred EEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHH
Q 039866 306 KVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 384 (418)
Q Consensus 306 ivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~ 384 (418)
.++++++.+..+++.+++ ||...+.+++|+.+++.++++......... .+.....++..+.| +++.+..+++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 678899999999999999 998889999999999999999887765444 22346677887776 67899999999998
Q ss_pred HHHHhCCCCccHHHHHHHHHHHH
Q 039866 385 LALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 385 ~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
.|..++...||.+++.+|+..+.
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC
Confidence 88888888999999999998764
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.78 E-value=1.3e-18 Score=172.20 Aligned_cols=237 Identities=21% Similarity=0.214 Sum_probs=148.5
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHH-----------------hcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQ-----------------KLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF 227 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~-----------------~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~ 227 (418)
+.|+|++.+++.|..++.....+..... .....++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988743332221100 01224567899999999999999999999999999
Q ss_pred EEEccchhh-hhhhcch-HHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCCC---CCCHHHHHHHHHHHHhhcC
Q 039866 228 LKLAGPQLV-QMFIGDG-AKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEV---SGDREVQRTMLELLNQLDG 298 (418)
Q Consensus 228 ~~i~~s~l~-~~~~g~~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~l~~ll~~~~~ 298 (418)
+.++|+.+. ..+.|.. ...+..++... ....++||||||+|.+...+..... .....+++.|+.+++....
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998775 3455543 33444454432 2235689999999999765422111 1122478888888874210
Q ss_pred -C---------------CCCCCeEEEEEeCC-----------------------------------------CCCCChhh
Q 039866 299 -F---------------SSDDRIKVIAATNR-----------------------------------------ADILDPAL 321 (418)
Q Consensus 299 -~---------------~~~~~vivI~ttn~-----------------------------------------~~~l~~~l 321 (418)
+ -...++++|+++|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 01245678888762 11367888
Q ss_pred hCCCCceeEEEcCCCCHHHHHHHHHH----Hhh-------cCCCC---CCCCHHHHHHHcC--CCcHHHHHHHHHHHHHH
Q 039866 322 MRSGRLDRKIELPHPSEEARARILQI----HSR-------KMTVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGML 385 (418)
Q Consensus 322 ~r~~Rf~~~i~~~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~~ 385 (418)
++ ||+.++.|++++.++...|+.. ++. ..... ++..+..++.... ....+.+++++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 88 9999999999999999998862 111 11111 1223455665532 24578999999888877
Q ss_pred HHHhCC------CCccHHHHHHHH
Q 039866 386 ALRRDA------TEVNHEDFNEGI 403 (418)
Q Consensus 386 A~~~~~------~~It~~d~~~Al 403 (418)
+..+.. ..||.+++..+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHhhccCCCCCEEEEeHHHhcCCC
Confidence 665422 258888887654
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=6.1e-18 Score=166.64 Aligned_cols=224 Identities=21% Similarity=0.278 Sum_probs=157.1
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh------CCcEEEEccchh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------NATFLKLAGPQL 235 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l------~~~~~~i~~s~l 235 (418)
..+++++|.+..++.+.+.+...+.. ..+.+++|+||||||||++++++++.+ +.+++.++|...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34578999999999999877543222 356689999999999999999999988 888999997643
Q ss_pred hh------hh----------hcc-hHHHHHHHHHHHHhCC-CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc
Q 039866 236 VQ------MF----------IGD-GAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 297 (418)
Q Consensus 236 ~~------~~----------~g~-~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 297 (418)
.. .. .|. .......++....... |.||+|||++.+.... +.+. +..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~---l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDI---LYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHH---HHHHhhchh
Confidence 21 11 111 1222444555554443 8899999999986432 1223 334444333
Q ss_pred CCCCCCCeEEEEEeCCC---CCCChhhhCCCCce-eEEEcCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHHHHHcC--
Q 039866 298 GFSSDDRIKVIAATNRA---DILDPALMRSGRLD-RKIELPHPSEEARARILQIHSRKMTVH---PDVNFEELARSTD-- 368 (418)
Q Consensus 298 ~~~~~~~vivI~ttn~~---~~l~~~l~r~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~la~~~~-- 368 (418)
.. ...++.+|++||.+ ..+++.+.+ ||. ..+.+++|+.++..+++...+...... .+.....++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 22 34578889999876 467888888 775 489999999999999999877532111 2223455666554
Q ss_pred -CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 039866 369 -DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 369 -g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 408 (418)
| .++.+..+|..|...|...+...|+.+|+..|+..+..
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 5 56778889999999988888889999999999988764
No 56
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=6e-20 Score=183.51 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=83.5
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCC-CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh-hhhcc
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGV-RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD 242 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~-~~~g~ 242 (418)
++|+|++++++.+..++..+..++..+..++. .+++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 47899999999999998777666555444432 25688999999999999999999999999999999999888 58885
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE-eCCCCCCChh
Q 039866 243 -GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA-TNRADILDPA 320 (418)
Q Consensus 243 -~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t-tn~~~~l~~~ 320 (418)
.+..++.+|..+... +++||++.+..... .....+.+.+++..++++.+...+ +++ ||+++.|+++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~~------~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARAE------DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccch------hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788899999988764 45888877643221 112235666777777777655554 455 9999999999
Q ss_pred hhCCCCceeEEEcCCCCHH-HHHHHH
Q 039866 321 LMRSGRLDRKIELPHPSEE-ARARIL 345 (418)
Q Consensus 321 l~r~~Rf~~~i~~~~p~~~-~r~~il 345 (418)
|+++|||++.|+++.|+.. .+.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 677765
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.3e-19 Score=169.34 Aligned_cols=214 Identities=7% Similarity=0.085 Sum_probs=150.8
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEEccchhh
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAGPQLV 236 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i~~s~l~ 236 (418)
+.|.++.+..|...+...+.. ..+.+++|+||||||||++++++++++ ...++++||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 678899999998887554433 467789999999999999999999988 3468899986543
Q ss_pred h----------hhhc------chHHHHHHHHHHH--HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 039866 237 Q----------MFIG------DGAKLVRDAFQLA--KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 298 (418)
Q Consensus 237 ~----------~~~g------~~~~~~~~~~~~a--~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 298 (418)
+ .+.| .....+...|... ....+.|++|||+|.+. .++.|+.+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 2 2222 2345566677764 34567899999999995 1356677776432
Q ss_pred CCCCCCeEEEEEeCCCCC----CChhhhCCCCce-eEEEcCCCCHHHHHHHHHHHhhcCCCC------------------
Q 039866 299 FSSDDRIKVIAATNRADI----LDPALMRSGRLD-RKIELPHPSEEARARILQIHSRKMTVH------------------ 355 (418)
Q Consensus 299 ~~~~~~vivI~ttn~~~~----l~~~l~r~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~------------------ 355 (418)
....+++||+++|..+. +++++.+ ||. ..|.|++++.++..+|++.++....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 23468999999998764 3455566 775 589999999999999999988764211
Q ss_pred ------------------CCCCHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHh---------CCCCccHHHHHHHHHH
Q 039866 356 ------------------PDVNFEELARS---TDDFNGAQLKAVCVEAGMLALRR---------DATEVNHEDFNEGIIQ 405 (418)
Q Consensus 356 ------------------~~~~~~~la~~---~~g~s~~di~~l~~~A~~~A~~~---------~~~~It~~d~~~Al~~ 405 (418)
.+..+..+|+. ..| ..|..-.+|+.|+..|.++ +...||.+.+.+++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 11224445553 233 3466668899999988653 2346788877777766
Q ss_pred HH
Q 039866 406 VQ 407 (418)
Q Consensus 406 ~~ 407 (418)
+.
T Consensus 315 ~~ 316 (318)
T 3te6_A 315 AI 316 (318)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=8.9e-18 Score=164.03 Aligned_cols=208 Identities=16% Similarity=0.168 Sum_probs=149.8
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC------CcEEEEc
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN------ATFLKLA 231 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~------~~~~~i~ 231 (418)
+..+..|++++|++++++.+...+... .+.++||+||||||||++|+++++.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 345678999999999999998877421 223599999999999999999999864 4588888
Q ss_pred cchhhhhhhcchHHHHHHHHHHHH----------------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh
Q 039866 232 GPQLVQMFIGDGAKLVRDAFQLAK----------------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 232 ~s~l~~~~~g~~~~~~~~~~~~a~----------------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 295 (418)
+++... ...++..+.... ...+.||+|||+|.+ ....++.|+.+++.
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALRRTMET 159 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHHHHHHh
Confidence 765321 111111111111 124579999999998 45667788888876
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHH
Q 039866 296 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQ 374 (418)
Q Consensus 296 ~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~d 374 (418)
.. .++.+|+++|.+..+.+++++ |+. .+.|++|+.++...++...+....+. ++..+..++..+.| ..+.
T Consensus 160 ~~-----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 230 (353)
T 1sxj_D 160 YS-----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRR 230 (353)
T ss_dssp TT-----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHH
T ss_pred cC-----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 32 356778888999999999999 885 88999999999999999887654432 23346778888776 4667
Q ss_pred HHHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Q 039866 375 LKAVCVEAGMLALRRDAT-EVNHEDFNEGII 404 (418)
Q Consensus 375 i~~l~~~A~~~A~~~~~~-~It~~d~~~Al~ 404 (418)
+.+++..+...+...+.. .|+.+|+.+++.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 231 GITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 777777776666444333 799999887654
No 59
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=2.6e-18 Score=177.02 Aligned_cols=228 Identities=16% Similarity=0.208 Sum_probs=144.3
Q ss_pred cccCCCCCCccccCcHHHHHHHHHHhhccccc-hHHHHhcCCC---CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 156 VDEKPTEDYNDIGGLEKQIQELIEAIVLPMTH-KERFQKLGVR---PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 156 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~-~~~~~~~g~~---~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
..+..+..|++|+|++.+++.+..++...... +..|...|.. +++++||+||||||||++|+++|++++.+++.++
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 34455678999999999999999988653221 1223333332 5578999999999999999999999999999999
Q ss_pred cchhhhhhhcchH-------HHHHHHHHHH-----HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC
Q 039866 232 GPQLVQMFIGDGA-------KLVRDAFQLA-----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 299 (418)
Q Consensus 232 ~s~l~~~~~g~~~-------~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 299 (418)
++++......... ..+..+|..+ ....+.||||||+|.+.... ......+..+++..
T Consensus 110 ~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~--- 178 (516)
T 1sxj_A 110 ASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT--- 178 (516)
T ss_dssp TTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC---
T ss_pred CCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhc---
Confidence 9876543221100 0011122222 22457899999999996432 12345566666641
Q ss_pred CCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHH
Q 039866 300 SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAV 378 (418)
Q Consensus 300 ~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l 378 (418)
...+++|+++.....+ +.+. |+...+.|++|+.+++.+++...+....+. .+..+..++..+.| ..+.+.++
T Consensus 179 --~~~iIli~~~~~~~~l-~~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~ 251 (516)
T 1sxj_A 179 --STPLILICNERNLPKM-RPFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINL 251 (516)
T ss_dssp --SSCEEEEESCTTSSTT-GGGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHH
T ss_pred --CCCEEEEEcCCCCccc-hhhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 1233333333222334 3454 444689999999999999998777543332 23347788887765 33444444
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 379 CVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 379 ~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
+..+ +. ....|+.+++..++...
T Consensus 252 L~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 252 LSTI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HTHH---HH--HSSCCCTTHHHHHHHHH
T ss_pred HHHH---Hh--cCCCCchHHHHHHHHhh
Confidence 4332 32 34568888888777644
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.77 E-value=9.7e-18 Score=154.34 Aligned_cols=206 Identities=15% Similarity=0.160 Sum_probs=144.1
Q ss_pred CCCCCccccCc---HHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 160 PTEDYNDIGGL---EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 160 ~~~~~~~i~G~---~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
+..+|++++|. ..+++.+...+.. ..+.+++|+||||||||++|+++++.+ +.+++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 44678888872 4566665554421 245679999999999999999999987 4788999988
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN- 312 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn- 312 (418)
++...+... +... ..+.+|+|||++.+.. ....+..+..+++.... .+.+.+|+++|
T Consensus 90 ~~~~~~~~~--------~~~~--~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEGL--EQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVAE---QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTTG--GGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHHH---HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHhc--cCCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCCeEEEEcCC
Confidence 776543211 1111 3457999999999843 22335667777665321 12332444444
Q ss_pred CCC---CCChhhhCCCCce--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 313 RAD---ILDPALMRSGRLD--RKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 313 ~~~---~l~~~l~r~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
.+. .+.+.+.+ ||. ..+.+++|+.+++.+++..++...... .+.....++..+.| +.+++.+++..+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 443 45688888 885 799999999999999999988755443 23346677777765 7889999999998888
Q ss_pred HHhCCCCccHHHHHHHHH
Q 039866 387 LRRDATEVNHEDFNEGII 404 (418)
Q Consensus 387 ~~~~~~~It~~d~~~Al~ 404 (418)
...+ ..||.+++.+++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6555 4699999998874
No 61
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=1.6e-18 Score=153.34 Aligned_cols=159 Identities=23% Similarity=0.354 Sum_probs=118.7
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 230 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i 230 (418)
+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 45789999999999999887632 245679999999999999999999986 6889999
Q ss_pred ccchhh--hhhhcchHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 231 AGPQLV--QMFIGDGAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 231 ~~s~l~--~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
+++.+. ..+.|.....+..++..+. ...+.||+|||+|.+.+.+... ....+.+.+..++.. .++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALAR-------GELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHHT-------TSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhcc-------CCeEE
Confidence 988776 2344555556666776554 4557899999999996543211 122344555555542 46778
Q ss_pred EEEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHH
Q 039866 308 IAATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARIL 345 (418)
Q Consensus 308 I~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il 345 (418)
|++||.+. .+++++++ ||. .+.+++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999 997 6999999999998775
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=1.7e-17 Score=163.95 Aligned_cols=222 Identities=16% Similarity=0.148 Sum_probs=157.4
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCC--CceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPK--GVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLV 236 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~--~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~ 236 (418)
.+++++|.+..++.+...+...... .++. +++|+||||||||++++++++.+ +.+++.++|+...
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3478999999999999987543222 2334 79999999999999999999988 5688999976532
Q ss_pred h------hh---h-------cc-hHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 039866 237 Q------MF---I-------GD-GAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 298 (418)
Q Consensus 237 ~------~~---~-------g~-~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 298 (418)
. .. . +. .......+..... ...|.||+|||+|.+ +...+..|..++.....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 1 10 0 11 1122222333332 245789999999998 44555555555543211
Q ss_pred CCCCCCeEEEEEeCCC---CCCChhhhCCCCcee-EEEcCCCCHHHHHHHHHHHhhcCC---CCCCCCHHHHHHHcC---
Q 039866 299 FSSDDRIKVIAATNRA---DILDPALMRSGRLDR-KIELPHPSEEARARILQIHSRKMT---VHPDVNFEELARSTD--- 368 (418)
Q Consensus 299 ~~~~~~vivI~ttn~~---~~l~~~l~r~~Rf~~-~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~--- 368 (418)
....++.+|++||.+ ..+++.+.+ ||.. .+.|++++.++..+++...+.... .-.+..+..++..+.
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 001478899999987 678888888 7765 899999999999999988876411 112334566777773
Q ss_pred -----CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 039866 369 -----DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 369 -----g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
+..++.+..+|..|...|..++...|+.+|+..++..+.
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 235788999999999999888888999999999987764
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=4.3e-18 Score=183.30 Aligned_cols=221 Identities=25% Similarity=0.318 Sum_probs=161.1
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 230 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i 230 (418)
+..|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34789999999999999887632 245679999999999999999999986 6678888
Q ss_pred ccchhh--hhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 039866 231 AGPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 308 (418)
Q Consensus 231 ~~s~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI 308 (418)
+++.+. ..+.|..+..++.++..+....++||||||+|.+.+.+... .+..+..+.|. ..-..+++.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~-------~~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIK-------PLLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHS-------SCSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHH-------HHHhCCCeEEE
Confidence 888776 45778888889999999988788999999999997654221 12223333222 22234678899
Q ss_pred EEeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC----CCC-CCCCHHHHHHHc-----CCCcHH
Q 039866 309 AATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVH-PDVNFEELARST-----DDFNGA 373 (418)
Q Consensus 309 ~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~-----~g~s~~ 373 (418)
++||.++ .+++++.+ ||. .+.|+.|+.+++.+|++.+...+ ... .+..+..++..+ ..+.+.
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTH
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCch
Confidence 9998643 57899998 997 79999999999999998776542 111 122244444433 335667
Q ss_pred HHHHHHHHHHHHHHH----hCCCCccHHHHHHHHHHH
Q 039866 374 QLKAVCVEAGMLALR----RDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 374 di~~l~~~A~~~A~~----~~~~~It~~d~~~Al~~~ 406 (418)
.+..++.+|...+.. .....|+.+|+..++...
T Consensus 397 ~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 888899888776654 245679999999998765
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=2.9e-18 Score=174.43 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=141.9
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+..+++|+|++..++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 455789999999999999887742 244579999999999999999999986 778999
Q ss_pred EccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 039866 230 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 309 (418)
Q Consensus 230 i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ 309 (418)
++++ ..+.|..+..++.+|..+....++||||| + ..+.++.|...+. .+.+.+|+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L~-------~g~v~vI~ 296 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA-------RGELQCIG 296 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT-------SSSCEEEE
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhhc-------CCCEEEEe
Confidence 9988 66777777778889999988888999999 1 2233344433332 45788999
Q ss_pred EeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHcC-----CCcHHH
Q 039866 310 ATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-----PDVNFEELARSTD-----DFNGAQ 374 (418)
Q Consensus 310 ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~-----g~s~~d 374 (418)
+||.+. .+++++++ ||. .+.|+.|+.+++..|++.++..+... .+..+..++..+. .+.+..
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcH
Confidence 999887 68999999 997 69999999999999999887653211 1222444444333 334567
Q ss_pred HHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHH
Q 039866 375 LKAVCVEAGMLALRRD-ATEVNHEDFNEGIIQVQA 408 (418)
Q Consensus 375 i~~l~~~A~~~A~~~~-~~~It~~d~~~Al~~~~~ 408 (418)
...++..|...+..+. ..+....++...+..+..
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~ 408 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRK 408 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence 7788887776654443 334455566666655543
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.75 E-value=9.3e-18 Score=157.84 Aligned_cols=209 Identities=20% Similarity=0.231 Sum_probs=131.3
Q ss_pred CCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEccchhhhh
Q 039866 162 EDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLVQM 238 (418)
Q Consensus 162 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s~l~~~ 238 (418)
.+|++++|.+.+++.+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 468899999999999988774321 2346899999999999999999999874 68999999876432
Q ss_pred -----hhcchHHHH-------HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--C----C
Q 039866 239 -----FIGDGAKLV-------RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--F----S 300 (418)
Q Consensus 239 -----~~g~~~~~~-------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~----~ 300 (418)
.+|...+.. ...+.. ..+++|||||++.+ +.+.+..|+++++...- . .
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 222211110 012222 23579999999999 56788889999886421 1 1
Q ss_pred CCCCeEEEEEeCCC-------CCCChhhhCCCCce-eEEEcCCCCH--HHHHHHHHHHhhc----CCCCC--CCCH---H
Q 039866 301 SDDRIKVIAATNRA-------DILDPALMRSGRLD-RKIELPHPSE--EARARILQIHSRK----MTVHP--DVNF---E 361 (418)
Q Consensus 301 ~~~~vivI~ttn~~-------~~l~~~l~r~~Rf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~~--~~~~---~ 361 (418)
...++.+|+|||.+ ..+.+++.+ ||. ..+.+|++.. ++...+++.++.. ..... ..+. .
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 12367899999974 357899988 885 3566666654 4555555554432 22211 2333 3
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 362 ELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 362 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
.+....-..+.+++++++..+...+ ....|+.+|+.
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l~ 251 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDII 251 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHcc
Confidence 3333332335678999998887665 34567776653
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=8.3e-17 Score=154.95 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=145.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccc
Q 039866 159 KPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGP 233 (418)
Q Consensus 159 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s 233 (418)
..+..|++++|++..++.+...+... ..+ +++|+||||+|||++|+++++.+ +.+++.++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDG------------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSC------------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcC------------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 34567899999999999998887421 233 39999999999999999999986 3457888876
Q ss_pred hhhhhhhcchHHHHHHHHHHHH-------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 234 QLVQMFIGDGAKLVRDAFQLAK-------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 234 ~l~~~~~g~~~~~~~~~~~~a~-------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
+... ...++..+.... ...+.||+|||+|.+ ....++.|..+++.. ..++.
T Consensus 82 ~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~ 139 (323)
T 1sxj_B 82 DDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY-----SNSTR 139 (323)
T ss_dssp SCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT-----TTTEE
T ss_pred cccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc-----CCCce
Confidence 5321 223344444433 234789999999998 445566777777652 35678
Q ss_pred EEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 039866 307 VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 307 vI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 385 (418)
+|++||.+..+.+++.+ |+. .+.|++|+.++...++...+...... ++.....++..+.| .++.+.+++..+...
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 88899999999999998 875 89999999999999999887654433 23345677777766 455555655554422
Q ss_pred HHHhCCCCccHHHHHHHHH
Q 039866 386 ALRRDATEVNHEDFNEGII 404 (418)
Q Consensus 386 A~~~~~~~It~~d~~~Al~ 404 (418)
...|+.+++..++.
T Consensus 216 -----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 -----HGLVNADNVFKIVD 229 (323)
T ss_dssp -----HSSBCHHHHHHHHT
T ss_pred -----CCCcCHHHHHHHHC
Confidence 13588888877654
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.74 E-value=2.5e-17 Score=158.34 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=139.7
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEcc
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAG 232 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~ 232 (418)
+..+..|++++|++.+++.+...+.. + ..+ ++||+||||||||++|+++++.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K-NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T-CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C-CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34567899999999999998887632 1 222 49999999999999999999986 345788888
Q ss_pred chhhhhhhcchHHHHHHHHHHH--HhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLA--KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a--~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
+..... ......+....... ....+.||+|||+|.+ ....++.|..+++ . ...++++|++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le---~--~~~~~~~i~~ 138 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTME---M--YSKSCRFILS 138 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGTS---S--SSSSEEEEEE
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHHH---h--cCCCCeEEEE
Confidence 754321 11111121111110 1244789999999998 3344454444443 2 2357889999
Q ss_pred eCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 039866 311 TNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 389 (418)
Q Consensus 311 tn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 389 (418)
||.+..+.+++.+ |+. .+.|++|+.+++..++...+...... ++..+..++..+.| ..+.+.+++..+...
T Consensus 139 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~---- 210 (319)
T 2chq_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI---- 210 (319)
T ss_dssp ESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS----
T ss_pred eCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc----
Confidence 9999999999998 885 89999999999999999888765543 23345666766554 455666666554321
Q ss_pred CCCCccHHHHHHHH
Q 039866 390 DATEVNHEDFNEGI 403 (418)
Q Consensus 390 ~~~~It~~d~~~Al 403 (418)
...|+.+++..++
T Consensus 211 -~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 -GEVVDADTIYQIT 223 (319)
T ss_dssp -SSCBCHHHHHHHT
T ss_pred -CCCCCHHHHHHHH
Confidence 3457777765543
No 68
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.73 E-value=1.2e-16 Score=157.29 Aligned_cols=202 Identities=18% Similarity=0.239 Sum_probs=144.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-------------
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------- 226 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~------------- 226 (418)
.+..|++++|++..++.+...+... ..++.+||+||+|||||++|+++++.+++.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4557899999999999999887421 234568999999999999999999988542
Q ss_pred -----------EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHH
Q 039866 227 -----------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 291 (418)
Q Consensus 227 -----------~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 291 (418)
++.++.+.. .....++.++..+.. ..+.||+|||+|.+ +...++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHHHHHHH
Confidence 122221110 011224455555542 34689999999998 4455666766
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCC
Q 039866 292 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDF 370 (418)
Q Consensus 292 ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 370 (418)
+++. ...++++|++|+.+..+.+++.+ |+ ..+.|++|+.++...++...+...... .+.....++..+.|
T Consensus 142 ~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G- 212 (373)
T 1jr3_A 142 TLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 212 (373)
T ss_dssp HHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-
T ss_pred HHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-
Confidence 6653 34578889999988899999998 87 689999999999999999888755443 22335677777766
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 039866 371 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 371 s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
+++.+.+++..+...+ ...|+.+++..++
T Consensus 213 ~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 213 SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 6788888888775433 3568888776654
No 69
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.73 E-value=8e-18 Score=171.47 Aligned_cols=206 Identities=20% Similarity=0.175 Sum_probs=138.1
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccch-hhhhhhc
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQ-LVQMFIG 241 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~-l~~~~~g 241 (418)
..|+|++++++.+...+. .+.++||+||||||||++|+++|..++ .+|..+++.- ..+.++|
T Consensus 22 ~~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 458899999988776652 234799999999999999999999884 4666666542 1223333
Q ss_pred chH--HH-HHHHHHHHHhC---CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC----C--CCCCCeEEEE
Q 039866 242 DGA--KL-VRDAFQLAKEK---SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----F--SSDDRIKVIA 309 (418)
Q Consensus 242 ~~~--~~-~~~~~~~a~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~----~--~~~~~vivI~ 309 (418)
... .. -...+..+... .++|||||||+.+ ++..+..|++++++... . ..+.+ ++|+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ 154 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVA 154 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhh
Confidence 211 00 01222222222 3579999999987 67888999999875321 1 11123 4677
Q ss_pred EeCCCC---CCChhhhCCCCceeEEEcCCCCH-HHHHHHHHHHhhcC-------------------------CCCCCCCH
Q 039866 310 ATNRAD---ILDPALMRSGRLDRKIELPHPSE-EARARILQIHSRKM-------------------------TVHPDVNF 360 (418)
Q Consensus 310 ttn~~~---~l~~~l~r~~Rf~~~i~~~~p~~-~~r~~il~~~~~~~-------------------------~~~~~~~~ 360 (418)
|||+.. .+.+++++ ||...+.+|+|+. +++..|+..+.... .++ +...
T Consensus 155 ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v~ 231 (500)
T 3nbx_X 155 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DHVF 231 (500)
T ss_dssp EESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHHH
T ss_pred ccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hHHH
Confidence 888533 25579999 9998999999987 77888887654211 111 1112
Q ss_pred HHHHHHc---------CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 361 EELARST---------DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 361 ~~la~~~---------~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
..++... .|.|++.+..+++.|...|..+++..|+.+|+.
T Consensus 232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 3333322 478999999999999999999999999999987
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=1.7e-16 Score=153.05 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=135.1
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhC-----CcEEEEcc
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAG 232 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~-----~~~~~i~~ 232 (418)
+..+..|++++|++.+++.+...+... ...++||+||||||||++|+++++.+. ..++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 355678999999999999998877421 222499999999999999999999863 34777877
Q ss_pred chhhhhhhcchHHHHHHHHHH--HHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 039866 233 PQLVQMFIGDGAKLVRDAFQL--AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 310 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~--a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~t 310 (418)
++.... ......+...... .....+.||+|||+|.+ ....++.|..+++.. ..++.+|++
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~~i~~ 146 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNVRFILS 146 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTEEEEEE
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCCeEEEE
Confidence 654221 0111111111100 01145789999999998 456677787777752 346788889
Q ss_pred eCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHH
Q 039866 311 TNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAG 383 (418)
Q Consensus 311 tn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~ 383 (418)
+|.+..+.+++.+ |+. .+.|++|+.++...++...+...... ++..+..++..+.| +.+.+.+++..+.
T Consensus 147 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 147 CNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp ESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999998 886 88999999999999999888755443 23345677777765 5666666666544
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=3.4e-17 Score=176.27 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=139.2
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
....+++|+|.+..++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 445789999999999999887742 245579999999999999999999997 788888
Q ss_pred EccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 039866 230 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 309 (418)
Q Consensus 230 i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ 309 (418)
+++ ...|.|+.+..++.+|..+....|+||||| + ..+.++.|...+. .+.+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~-------~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA-------RGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT-------SSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHh-------cCCEEEEe
Confidence 888 456778888888999999998889999999 1 1233343433322 46788999
Q ss_pred EeCCCC-----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCC--C---CHHHHHHH-----cCCCcHHH
Q 039866 310 ATNRAD-----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD--V---NFEELARS-----TDDFNGAQ 374 (418)
Q Consensus 310 ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~---~~~~la~~-----~~g~s~~d 374 (418)
+||... .+++++++ || ..+.|+.|+.+++..|++.+...+..... + .+..++.. ..++.+..
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999888 79999999 99 57999999999999999987765432212 1 23333332 34566778
Q ss_pred HHHHHHHHHHHHHHhCC-CCccHHHHHHHHHH
Q 039866 375 LKAVCVEAGMLALRRDA-TEVNHEDFNEGIIQ 405 (418)
Q Consensus 375 i~~l~~~A~~~A~~~~~-~~It~~d~~~Al~~ 405 (418)
...++..|+..+..+.. ..-...++...+..
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~ 405 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDE 405 (758)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcchhhHHHHHHH
Confidence 88888888776654432 22333444444333
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=2.5e-17 Score=145.33 Aligned_cols=152 Identities=22% Similarity=0.383 Sum_probs=113.1
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 230 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~i 230 (418)
+..|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45688999999999999887732 235579999999999999999999987 7788888
Q ss_pred ccchhhhh--hhcchHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEE
Q 039866 231 AGPQLVQM--FIGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 307 (418)
Q Consensus 231 ~~s~l~~~--~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~viv 307 (418)
+++.+... +.|.....+..++..+... .|.+|+|||+|.+.+.+... ....++.+.+..+++. .++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~~l~~~~~~-------~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALDAGNILKPMLAR-------GELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCCTHHHHHHHHHT-------TCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchHHHHHHHHHHhc-------CCeeE
Confidence 88776532 3444555566677666554 67899999999997544311 1123445556555543 46778
Q ss_pred EEEeCCCC-----CCChhhhCCCCceeEEEcCCCC
Q 039866 308 IAATNRAD-----ILDPALMRSGRLDRKIELPHPS 337 (418)
Q Consensus 308 I~ttn~~~-----~l~~~l~r~~Rf~~~i~~~~p~ 337 (418)
|+++|.+. .+++++++ ||. .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99998765 68999999 998 58999885
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.71 E-value=1.9e-17 Score=159.14 Aligned_cols=206 Identities=22% Similarity=0.274 Sum_probs=135.3
Q ss_pred ccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh---
Q 039866 165 NDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM--- 238 (418)
Q Consensus 165 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~--- 238 (418)
++++|.+.+++.+.+.+.... ..+.++||+||||||||++|+++++.+ +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 358899999999988875331 345689999999999999999999976 578999999876442
Q ss_pred --hhcch----HH---HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC------CCCC
Q 039866 239 --FIGDG----AK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF------SSDD 303 (418)
Q Consensus 239 --~~g~~----~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~ 303 (418)
++|.. .+ .....|+.+. +++||||||+.+ +...+..|+.+++...-. ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 22221 01 0112344443 369999999999 567888888888864311 1124
Q ss_pred CeEEEEEeCCC-------CCCChhhhCCCCce-eEEEcCCCC--HHHHHHHHHHHhhcC----CCC-CCCC---HHHHHH
Q 039866 304 RIKVIAATNRA-------DILDPALMRSGRLD-RKIELPHPS--EEARARILQIHSRKM----TVH-PDVN---FEELAR 365 (418)
Q Consensus 304 ~vivI~ttn~~-------~~l~~~l~r~~Rf~-~~i~~~~p~--~~~r~~il~~~~~~~----~~~-~~~~---~~~la~ 365 (418)
++.||+|||.. ..+++.+.. ||. ..+.+|++. .++...++..++..+ ... ...+ +..+..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68899999975 357778887 774 346666665 345555666655432 211 1222 444444
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 039866 366 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 400 (418)
Q Consensus 366 ~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~ 400 (418)
..-..+.+++.+++..|...+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 442335688999998887665 34566666664
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=9.5e-17 Score=174.77 Aligned_cols=204 Identities=21% Similarity=0.288 Sum_probs=136.6
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----------CCcEEE
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 229 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----------~~~~~~ 229 (418)
.+..|++++|.+..+..+.+.+.. ..+++++|+||||||||++|+++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 346789999999999999887632 245689999999999999999999987 789999
Q ss_pred Eccchhh--hhhhcchHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 230 LAGPQLV--QMFIGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 230 i~~s~l~--~~~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
++++.+. ..+.|+.+..++.++..+... .|+||||||+|.+.+.... .+..+..+.+..++.. +++.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~~-------~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALAR-------GELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT-------TCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHhC-------CCeE
Confidence 9998886 467788888888999988765 6899999999999754322 1223455666666653 4577
Q ss_pred EEEEeCCCC----CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCC----CC-CCCCHHHHHHH-----cCCCcH
Q 039866 307 VIAATNRAD----ILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VH-PDVNFEELARS-----TDDFNG 372 (418)
Q Consensus 307 vI~ttn~~~----~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~la~~-----~~g~s~ 372 (418)
+|++||.++ .+++++.+ ||.. +.++.|+.+++..|++.++..+. .. .+..+..++.. +..+.+
T Consensus 302 ~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLP 378 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTH
T ss_pred EEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccCh
Confidence 899988764 47899999 9985 99999999999999987765431 11 12223344443 345667
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039866 373 AQLKAVCVEAGMLALRR 389 (418)
Q Consensus 373 ~di~~l~~~A~~~A~~~ 389 (418)
.....++.+|...+...
T Consensus 379 ~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 78888888877766543
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=1.2e-17 Score=174.20 Aligned_cols=227 Identities=21% Similarity=0.167 Sum_probs=148.4
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc----cchhhhhh
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA----GPQLVQMF 239 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~----~s~l~~~~ 239 (418)
...|+|++.+++.+...+...... ......++...++||+||||||||++|+++|+.++..++... +..+....
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~--~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPK--VLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCE--ETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred cchhcChHHHHHHHHHHHhCCCcc--cccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 346889999887775444221100 000011233448999999999999999999999876655432 22222111
Q ss_pred hcch-HH---HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--------CCCCCCeEE
Q 039866 240 IGDG-AK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--------FSSDDRIKV 307 (418)
Q Consensus 240 ~g~~-~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~viv 307 (418)
.... .+ .....+..+ ..+|+||||||.+ +++.+..|+++++...- ...+.++.|
T Consensus 372 ~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eeccccccccccCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1100 00 001122233 2369999999998 55778889999885321 112347889
Q ss_pred EEEeCCCC-------------CCChhhhCCCCcee-EEEcCCCCHHHHHHHHHHHhhcCCC-------------------
Q 039866 308 IAATNRAD-------------ILDPALMRSGRLDR-KIELPHPSEEARARILQIHSRKMTV------------------- 354 (418)
Q Consensus 308 I~ttn~~~-------------~l~~~l~r~~Rf~~-~i~~~~p~~~~r~~il~~~~~~~~~------------------- 354 (418)
|+|||+.. .+++++++ ||+. .+..+.|+.+ ...|.++.+.....
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a 514 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYA 514 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHH
Confidence 99999886 89999999 9985 5555666666 77777766543210
Q ss_pred -------CCCCCHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 355 -------HPDVNFEELARS--------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 355 -------~~~~~~~~la~~--------------~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
-++.....+... ..+.|++.+..+++.|...|..+++..|+.+|+.+|+.-+..+
T Consensus 515 r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 515 RKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 111223334443 2467889999999999999999999999999999999887654
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=1e-15 Score=149.75 Aligned_cols=193 Identities=15% Similarity=0.211 Sum_probs=134.0
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHh-hccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC----------
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAI-VLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA---------- 225 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~---------- 225 (418)
.+..+.+|++++|++.+++.+...+ .. + ..++ ++|+||+|||||++++++++.+..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 3456678999999999999887766 21 1 2344 999999999999999999996411
Q ss_pred -------------------cEEEEccchhhhhhhcchHHHHHHHHHHHH--------------hCCCeEEEEcCCCcccc
Q 039866 226 -------------------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAK--------------EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 226 -------------------~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~--------------~~~~~vl~iDEid~l~~ 272 (418)
.++.++.+... ......++..+..+. ...|.|++|||++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-- 146 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-- 146 (354)
T ss_dssp -------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS--
T ss_pred eeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc--
Confidence 12223222110 000012333333321 235679999999997
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcC
Q 039866 273 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM 352 (418)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 352 (418)
+...++.+..+++.. ..++.+|++||.+..+.+++++ |+ ..+.|++|+.++...+++..+...
T Consensus 147 ---------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 147 ---------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp ---------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 566778888888763 2357888999999999999998 88 789999999999999999888655
Q ss_pred CCC-C-CCCHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 039866 353 TVH-P-DVNFEELARSTDDFNGAQLKAVCVEAGMLA 386 (418)
Q Consensus 353 ~~~-~-~~~~~~la~~~~g~s~~di~~l~~~A~~~A 386 (418)
.+. + +..+..++..+.| +.+++.++++.+...+
T Consensus 210 ~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 210 RIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp TCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 443 2 4456778877765 5677777777665543
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.9e-15 Score=147.36 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=138.4
Q ss_pred cCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC-----cEEEEcc
Q 039866 158 EKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-----TFLKLAG 232 (418)
Q Consensus 158 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~-----~~~~i~~ 232 (418)
+..+..|++++|++.+++.+...+.. | ..| +++|+||||||||++|+++|+.+.+ .+..+++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 34567899999999999998887742 1 223 4999999999999999999998732 3666666
Q ss_pred chhhhhhhcchHHHHHHHHHHHH------hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeE
Q 039866 233 PQLVQMFIGDGAKLVRDAFQLAK------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 306 (418)
Q Consensus 233 s~l~~~~~g~~~~~~~~~~~~a~------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vi 306 (418)
++... ...++....... ...+.|++|||+|.+ ....++.|..+++.. ...+.
T Consensus 85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~ 142 (340)
T 1sxj_C 85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY-----TKNTR 142 (340)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT-----TTTEE
T ss_pred ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC-----CCCeE
Confidence 54211 122222222222 123689999999998 445677787777753 24567
Q ss_pred EEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 039866 307 VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 385 (418)
Q Consensus 307 vI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 385 (418)
+|+++|.+..+.+++.+ |+. .+.|++++.++..+++...+....+. .+.....++..+.| ..+.+.++++.+...
T Consensus 143 ~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~ 218 (340)
T 1sxj_C 143 FCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKAT 218 (340)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTT
T ss_pred EEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 88889999999999999 885 78999999999999888887543332 22335566666654 344444444433322
Q ss_pred HHHhCCCCccHHHHHHHH
Q 039866 386 ALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 386 A~~~~~~~It~~d~~~Al 403 (418)
+...+...|+.+++..++
T Consensus 219 ~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 219 LDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TCSSSCCCBCHHHHHHHT
T ss_pred cCCcccccccHHHHHHHh
Confidence 211122357877776544
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.63 E-value=2e-16 Score=134.82 Aligned_cols=132 Identities=18% Similarity=0.258 Sum_probs=96.0
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHH
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAK 245 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~ 245 (418)
+++|.+.+++.+.+.+.... ..+.++||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57899999999999875331 2456799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-CC----CChh
Q 039866 246 LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-DI----LDPA 320 (418)
Q Consensus 246 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~-~~----l~~~ 320 (418)
....++.+. +++|||||+|.+ +.+.+..++++++... ..++.+|+|||.+ .. +++.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHH
Confidence 334555543 469999999999 5678888888888753 3567788888854 33 3445
Q ss_pred hhCCCCce-eEEEcCCC
Q 039866 321 LMRSGRLD-RKIELPHP 336 (418)
Q Consensus 321 l~r~~Rf~-~~i~~~~p 336 (418)
+.. |+. ..|.+|++
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 554 543 36677654
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.63 E-value=5.2e-16 Score=132.55 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=95.3
Q ss_pred cccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcc
Q 039866 166 DIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD 242 (418)
Q Consensus 166 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~ 242 (418)
+++|.+.+++.+.+.+.... ..+.++||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 57899999999998775331 345679999999999999999999986 67899 999876554
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-------C
Q 039866 243 GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-------D 315 (418)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~-------~ 315 (418)
......+..+. +++|||||+|.+ +.+.+..+++++.. ...++.+|+|||.+ .
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSCHHHHHHHS
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcCHHHHHHcC
Confidence 12234455553 359999999999 66778888888732 23456789999964 2
Q ss_pred CCChhhhCCCCcee-EEEcCCC
Q 039866 316 ILDPALMRSGRLDR-KIELPHP 336 (418)
Q Consensus 316 ~l~~~l~r~~Rf~~-~i~~~~p 336 (418)
.+.+.+.. |+.. .|.+|++
T Consensus 125 ~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 125 HIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp CCCHHHHH--HHHHHEEECCCC
T ss_pred CCCHHHHH--HhcCCEEeCCCC
Confidence 46666665 5543 5666654
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.62 E-value=1.4e-15 Score=159.33 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=144.4
Q ss_pred ccCCCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc---EEEEccc
Q 039866 157 DEKPTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGP 233 (418)
Q Consensus 157 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~---~~~i~~s 233 (418)
...++..|++++|++.+++.+...+. ...+++|+||||||||++|+++|..+... .+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 34566789999999999988887762 34589999999999999999999987422 2222111
Q ss_pred hhh--------------hh------------------------------------------hhcchHHHHHHHHH-----
Q 039866 234 QLV--------------QM------------------------------------------FIGDGAKLVRDAFQ----- 252 (418)
Q Consensus 234 ~l~--------------~~------------------------------------------~~g~~~~~~~~~~~----- 252 (418)
... .. ++.........+|.
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 000 00 00000000011111
Q ss_pred ------------------HHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC---------------
Q 039866 253 ------------------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--------------- 299 (418)
Q Consensus 253 ------------------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--------------- 299 (418)
.+....+++|||||++.+ ++..+..|+++|+...-.
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 111224569999999998 678899999999853211
Q ss_pred -CCCCCeEEEEEeCCC--CCCChhhhCCCCce---eEEEcCCC---CHHHHHHHHHHHhhcCC---CC---CCCCHHHHH
Q 039866 300 -SSDDRIKVIAATNRA--DILDPALMRSGRLD---RKIELPHP---SEEARARILQIHSRKMT---VH---PDVNFEELA 364 (418)
Q Consensus 300 -~~~~~vivI~ttn~~--~~l~~~l~r~~Rf~---~~i~~~~p---~~~~r~~il~~~~~~~~---~~---~~~~~~~la 364 (418)
..+.++.||++||+. +.++++|++ ||. ..+.|+.. ..+....+++....... .. .+..+..+.
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li 324 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIV 324 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence 112378899999976 679999999 986 46666532 34555666554443211 11 122244444
Q ss_pred HHc---CCC------cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 039866 365 RST---DDF------NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 405 (418)
Q Consensus 365 ~~~---~g~------s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 405 (418)
..+ .|. +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 432 442 68999999999999999899999999999999864
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=2.5e-13 Score=135.08 Aligned_cols=230 Identities=11% Similarity=0.116 Sum_probs=148.6
Q ss_pred CCccccCcHHHHHHHHHHh-hccccchHHHHhcCCCCCCCcee--ecCCCCcHHHHHHHHHHHh---------CCcEEEE
Q 039866 163 DYNDIGGLEKQIQELIEAI-VLPMTHKERFQKLGVRPPKGVLL--YGPPGTGKTLMARACAAQT---------NATFLKL 230 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~~~~~~vLl--~Gp~GtGKT~lakala~~l---------~~~~~~i 230 (418)
..+.++|.+..++.+...+ ...... .+ ..+..++| +||||+|||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3467999999999998876 432111 00 13456899 9999999999999999876 4567888
Q ss_pred ccchh------hhhh---h-------cch-HHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHH
Q 039866 231 AGPQL------VQMF---I-------GDG-AKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 292 (418)
Q Consensus 231 ~~s~l------~~~~---~-------g~~-~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 292 (418)
+|... .... . +.. ......+..... ...|.||+|||+|.+...+. .+.+....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHHH
Confidence 86432 1111 1 111 122223333322 34578999999999853210 123444444455
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCC---CCC---hhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHH
Q 039866 293 LNQLDGFSSDDRIKVIAATNRAD---ILD---PALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH---PDVNFEEL 363 (418)
Q Consensus 293 l~~~~~~~~~~~vivI~ttn~~~---~l~---~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~l 363 (418)
+..........++.+|++|+.++ .++ +.+.+ ++...+.+++++.++..+++...+...... .+.....+
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 54432000025788888887654 234 56666 666669999999999999998776532111 22335667
Q ss_pred HHHcC------CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 039866 364 ARSTD------DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 364 a~~~~------g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
+..+. | .++.+..++..|...|..++...++.+++..++....
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 77777 6 5778889999998888888888899999998887654
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.51 E-value=6.9e-13 Score=128.92 Aligned_cols=171 Identities=17% Similarity=0.199 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCc-----------------------
Q 039866 170 LEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------------------- 226 (418)
Q Consensus 170 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~----------------------- 226 (418)
+.+.++.+...+... +.++.+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 466667776665321 345679999999999999999999987542
Q ss_pred -EEEEccchhhhhhhcchHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 039866 227 -FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 301 (418)
Q Consensus 227 -~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 301 (418)
++.++..+- + .......++.+.+.+.. ..+.|++|||+|.+ ..+.++.|+..+++ +
T Consensus 75 d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe-----p 135 (334)
T 1a5t_A 75 DYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_dssp TEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS-----C
T ss_pred CEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC-----C
Confidence 222322100 0 01123345666666643 23689999999999 44556666655543 3
Q ss_pred CCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHH
Q 039866 302 DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVC 379 (418)
Q Consensus 302 ~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 379 (418)
..++++|++||.++.+.|++++ |+ ..+.|++|+.++...++.... .+ .+.....++..+.| +++.+.+++
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTT
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 4578889999999999999999 88 479999999999999888765 22 22334567777666 444444443
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=5e-13 Score=128.11 Aligned_cols=142 Identities=11% Similarity=0.144 Sum_probs=105.3
Q ss_pred CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh------CCcEEEEccchhhhhhhcc
Q 039866 169 GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------NATFLKLAGPQLVQMFIGD 242 (418)
Q Consensus 169 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l------~~~~~~i~~s~l~~~~~g~ 242 (418)
|++++++.+...+... . +.++|||||||+|||++|+++|+.+ ...++.++.+.- ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 6788888888877432 2 3479999999999999999999864 346777775420 11
Q ss_pred hHHHHHHHHHHHHhCC----CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q 039866 243 GAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 318 (418)
Q Consensus 243 ~~~~~~~~~~~a~~~~----~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~ 318 (418)
+-..++.+.+.+...+ +.|++|||+|.+ ....++.|+..+++ ++.++++|++|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 2334667777775433 479999999999 45667777777764 346778888888889999
Q ss_pred hhhhCCCCceeEEEcCCCCHHHHHHHHHHHh
Q 039866 319 PALMRSGRLDRKIELPHPSEEARARILQIHS 349 (418)
Q Consensus 319 ~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~ 349 (418)
|++++ | .+.|++|+.++...++...+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 8 78999999999999888776
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.44 E-value=3.4e-13 Score=133.75 Aligned_cols=272 Identities=19% Similarity=0.209 Sum_probs=163.7
Q ss_pred CCceEEEeecccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhh-hc--cccccCCCCCCccccCcHHHHHHHH
Q 039866 102 KGKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRV-KA--MEVDEKPTEDYNDIGGLEKQIQELI 178 (418)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--~~~~~~~~~~~~~i~G~~~~~~~l~ 178 (418)
+...+|+.+++......+...+.+..+++..+.+...+...+......+. .. ..........+..++|.+..++.+.
T Consensus 71 ~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~~~~~~~~~ig~s~~m~~l~ 150 (387)
T 1ny5_A 71 PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEIL 150 (387)
T ss_dssp TTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHH
T ss_pred CCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhccHHhhHHH
Confidence 44567777776655555555566677787776554333332221111000 00 0000000012567899999999888
Q ss_pred HHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh-----hhcchHH-----
Q 039866 179 EAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-----FIGDGAK----- 245 (418)
Q Consensus 179 ~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~-----~~g~~~~----- 245 (418)
+.+... .....+++|+|++|||||++|++++... +.+|+.++|+.+... .+|...+
T Consensus 151 ~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga 219 (387)
T 1ny5_A 151 EKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGA 219 (387)
T ss_dssp HHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTC
T ss_pred HHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCc
Confidence 877431 1345579999999999999999999876 479999999876443 2232111
Q ss_pred --HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcC--CCC----CCCeEEEEEeCCC---
Q 039866 246 --LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS----DDRIKVIAATNRA--- 314 (418)
Q Consensus 246 --~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~----~~~vivI~ttn~~--- 314 (418)
.....|+.+.. ++||||||+.+ +.+.|..|+++|+...- ..+ ..++.||+|||..
T Consensus 220 ~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~ 285 (387)
T 1ny5_A 220 VSSKEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKE 285 (387)
T ss_dssp CSCBCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHH
T ss_pred ccccCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHH
Confidence 01234555543 59999999999 78899999999987431 111 2367899999963
Q ss_pred ----CCCChhhhCCCCce-eEEEcCCCCH--HHHHHHHHHHhhc----CCCC-CCCCHHHHHHH-cCCCcH--HHHHHHH
Q 039866 315 ----DILDPALMRSGRLD-RKIELPHPSE--EARARILQIHSRK----MTVH-PDVNFEELARS-TDDFNG--AQLKAVC 379 (418)
Q Consensus 315 ----~~l~~~l~r~~Rf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~-~~~~~~~la~~-~~g~s~--~di~~l~ 379 (418)
..+.+.+.. |+. ..|.+|++.. ++...++.+++.. +... ...+...+... .+.|.| +++++++
T Consensus 286 ~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i 363 (387)
T 1ny5_A 286 LVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVI 363 (387)
T ss_dssp HHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHH
Confidence 356666665 553 2455555432 4445555555543 2222 12333333322 134444 7999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHH
Q 039866 380 VEAGMLALRRDATEVNHEDFNEGI 403 (418)
Q Consensus 380 ~~A~~~A~~~~~~~It~~d~~~Al 403 (418)
..|...+ ....|+.+|+...+
T Consensus 364 ~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 364 ERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHC---CSSEECHHHHHHHC
T ss_pred HHHHHhC---CCCcCcHHHCcHhh
Confidence 9888765 45689999986543
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=99.50 Aligned_cols=77 Identities=44% Similarity=0.705 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhh
Q 039866 334 PHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 334 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 410 (418)
|+|+.++|.+||+.+++++.+..++++..|+..+.||||+||.++|++|++.|++++...|+.+||..|+.++..++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 68999999999999999998888999999999999999999999999999999999999999999999999987654
No 86
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.38 E-value=1.4e-11 Score=122.50 Aligned_cols=219 Identities=19% Similarity=0.134 Sum_probs=133.7
Q ss_pred ccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHH-HHHhCCcEEEEc-cch---hhhhhhc
Q 039866 167 IGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC-AAQTNATFLKLA-GPQ---LVQMFIG 241 (418)
Q Consensus 167 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakal-a~~l~~~~~~i~-~s~---l~~~~~g 241 (418)
|.|++.+++.+.-.+...-.. ++..-++||.|+||| ||++|+++ ++.+....+... ++. +.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 888888877776655322110 122337999999999 99999999 776544333221 111 1111000
Q ss_pred ch-HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhc----CCCCCCCeEEEEEeCCCC-
Q 039866 242 DG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD----GFSSDDRIKVIAATNRAD- 315 (418)
Q Consensus 242 ~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~~~vivI~ttn~~~- 315 (418)
.+ .....+.+..|. .+|+|+|||+.+ ++..+..|++.+++.. +..-+.++.||+|+|+..
T Consensus 286 ~tG~~~~~G~l~LAd---gGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLAD---GGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHTT---TSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEcC---CCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 00 000012233332 259999999998 6788999999998632 212235788999999865
Q ss_pred ----------CCChhhhCCCCceeEEEc-CCCCHHH-------------HHHHHHHHhhcCCCC---CCCCHHHHHH---
Q 039866 316 ----------ILDPALMRSGRLDRKIEL-PHPSEEA-------------RARILQIHSRKMTVH---PDVNFEELAR--- 365 (418)
Q Consensus 316 ----------~l~~~l~r~~Rf~~~i~~-~~p~~~~-------------r~~il~~~~~~~~~~---~~~~~~~la~--- 365 (418)
.|++++++ ||+..+.+ ..|+.+. ..+++. +.+...+. ++.....+..
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHH
Confidence 78899999 99875443 4444322 222222 12201111 1111111110
Q ss_pred --------------HcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhh
Q 039866 366 --------------STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 411 (418)
Q Consensus 366 --------------~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 411 (418)
...|.|++.+..+++.|...|..+++..|+.+|+..|+.-+..+-.
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 2347899999999999999999999999999999999998887543
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=5.6e-13 Score=151.01 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=108.1
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccc----------hHHHHh------cCCC----------CCCC--ceeecCCCCc
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTH----------KERFQK------LGVR----------PPKG--VLLYGPPGTG 211 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~----------~~~~~~------~g~~----------~~~~--vLl~Gp~GtG 211 (418)
+.+.|.+|.|.+++++.+.+.+.+++.+ ++.|.. .|+. +|++ +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4478999999999999999999988854 556666 3333 4455 9999999999
Q ss_pred HHHHHHHHHHHh---CCcEEEEccchhh------------hhhhcc----hHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 212 KTLMARACAAQT---NATFLKLAGPQLV------------QMFIGD----GAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 212 KT~lakala~~l---~~~~~~i~~s~l~------------~~~~g~----~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
||++|++++.+. +.+.+.|+..+.. ++++++ ++..++.++..++...|+++|+|+++.|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999876 5676777765533 556677 788999999999999999999999999998
Q ss_pred cCC---CCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q 039866 273 KRF---DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 313 (418)
Q Consensus 273 ~~~---~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~ 313 (418)
.+. +.......-..+.+.++|..+++.....+++|| +||+
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 843 221111122344578888888775555677777 6665
No 88
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=100.56 Aligned_cols=78 Identities=44% Similarity=0.687 Sum_probs=73.7
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhh
Q 039866 333 LPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 410 (418)
Q Consensus 333 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 410 (418)
-.+|+.++|.+||+.+++++++..++++..||..|.||||+||.++|++|++.|+++....|+.+||..|+.++.+++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 468999999999999999998888999999999999999999999999999999999999999999999999998754
No 89
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.33 E-value=4.1e-12 Score=125.01 Aligned_cols=253 Identities=22% Similarity=0.268 Sum_probs=149.2
Q ss_pred CCceEEEeecccccccccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccccCCCCCCccccCcHHHHHHHHHHh
Q 039866 102 KGKCVVLKTSYPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELIEAI 181 (418)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i 181 (418)
+...+++.|++......+.....+..+++..+.+...+...+...... .... .+......++|.+..+..+...+
T Consensus 71 ~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~----~~~~-~~~~~~~~~ig~s~~~~~~~~~~ 145 (368)
T 3dzd_A 71 PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE----YSKK-APPQEEIEFVGEHPKILEIKRLI 145 (368)
T ss_dssp TTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH----HSCC-CCCCCCCCCCCCSHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH----hhhh-hcccccccccccchHHHHHHhhh
Confidence 445677777665444444444555666666655443333222211111 0000 01112246889999988887766
Q ss_pred hccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCC--cEEEEccchhhhh-----hhcchHHH-------H
Q 039866 182 VLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQM-----FIGDGAKL-------V 247 (418)
Q Consensus 182 ~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~--~~~~i~~s~l~~~-----~~g~~~~~-------~ 247 (418)
.... .....++++|++||||+.+|++++...+. +|+.+||+.+... .+|...+. .
T Consensus 146 ~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~ 214 (368)
T 3dzd_A 146 PKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRK 214 (368)
T ss_dssp HHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCE
T ss_pred hhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccccc
Confidence 3221 23446999999999999999999998753 3999999865432 22221110 1
Q ss_pred HHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCC--CC----CCCeEEEEEeCCC-------
Q 039866 248 RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS----DDRIKVIAATNRA------- 314 (418)
Q Consensus 248 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~----~~~vivI~ttn~~------- 314 (418)
...|+.+.. ++||||||+.+ +...|..|+++++...-. .+ ..++.+|++||..
T Consensus 215 ~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~ 280 (368)
T 3dzd_A 215 KGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKK 280 (368)
T ss_dssp ECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHT
T ss_pred CChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHc
Confidence 134555543 59999999999 788999999999874322 11 1267799999953
Q ss_pred CCCChhhhCCCCcee-EEEcCCCCH--HHHHHHHHHHhhcC----CCC-CCCCHHHHHHH-cCCCc--HHHHHHHHHHHH
Q 039866 315 DILDPALMRSGRLDR-KIELPHPSE--EARARILQIHSRKM----TVH-PDVNFEELARS-TDDFN--GAQLKAVCVEAG 383 (418)
Q Consensus 315 ~~l~~~l~r~~Rf~~-~i~~~~p~~--~~r~~il~~~~~~~----~~~-~~~~~~~la~~-~~g~s--~~di~~l~~~A~ 383 (418)
..+.+.|.. |+.. .|.+|++.. ++...++.+++... ... ...+...+... .+.|. .+++++++..|.
T Consensus 281 g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 281 GNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp TSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred CCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 356666665 5543 466766654 45566666655432 221 22333333322 22333 478888888777
Q ss_pred HHH
Q 039866 384 MLA 386 (418)
Q Consensus 384 ~~A 386 (418)
..+
T Consensus 359 ~~~ 361 (368)
T 3dzd_A 359 ILC 361 (368)
T ss_dssp HTC
T ss_pred HhC
Confidence 654
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.28 E-value=5e-12 Score=97.04 Aligned_cols=83 Identities=25% Similarity=0.478 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhhhhccc
Q 039866 336 PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLN 415 (418)
Q Consensus 336 p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~~ 415 (418)
.+.++|.+||+.+++++++..++++..+|..++||||+||.++|++|++.|++++...|+.+||..|+.++.++....+.
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~~~l~ 80 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHE 80 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCchHHHH
Confidence 36789999999999999988899999999999999999999999999999999999999999999999999987777778
Q ss_pred cCC
Q 039866 416 YYA 418 (418)
Q Consensus 416 ~~~ 418 (418)
+|.
T Consensus 81 ~y~ 83 (83)
T 3aji_B 81 FYK 83 (83)
T ss_dssp ---
T ss_pred hcC
Confidence 773
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=9e-12 Score=109.78 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=80.4
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchh
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQL 235 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l 235 (418)
...+|+++++.+...+.+.+.+.. ....+.+.++.+++|+||||||||+++++++..+ +..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRV------FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHH------HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHH------HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 345788887643333333332211 1122333456789999999999999999999876 567777887777
Q ss_pred hhhhhcchHHH-HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 236 VQMFIGDGAKL-VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 236 ~~~~~g~~~~~-~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
...+....... ...+.... ..|.+|+|||++... .++..+..+..+++.... .+..+|+|||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~ 143 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRYN----NLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCC
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHHH----cCCCEEEEcCCC
Confidence 65443211100 00122222 256799999998542 145566777788776421 234577788765
Q ss_pred C
Q 039866 315 D 315 (418)
Q Consensus 315 ~ 315 (418)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 3
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.25 E-value=5.7e-11 Score=140.14 Aligned_cols=141 Identities=19% Similarity=0.359 Sum_probs=98.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHH-hCCcEEEEccchhhhhhhcchHHHHHHHHHHH----H-----------hCCCeE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQ-TNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA----K-----------EKSPCI 261 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~-l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a----~-----------~~~~~v 261 (418)
.++++||+||||||||++|+.+... .+..++.++++...+. ..+...++.. + .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 4568999999999999999555544 4678888887755321 2233333322 0 123479
Q ss_pred EEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------CCeEEEEEeCCCC-----CCChhhhCCCCcee
Q 039866 262 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-------DRIKVIAATNRAD-----ILDPALMRSGRLDR 329 (418)
Q Consensus 262 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~vivI~ttn~~~-----~l~~~l~r~~Rf~~ 329 (418)
|||||++.....+. |.......+.++++...-.... .++.+|+|+|++. .++|+++| || .
T Consensus 1340 lFiDEinmp~~d~y-----g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-----GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEEETTTCSCCCSS-----SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred EEeccccccccccc-----CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 99999997544332 2234567777888642111111 2688999999994 79999999 99 7
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcC
Q 039866 330 KIELPHPSEEARARILQIHSRKM 352 (418)
Q Consensus 330 ~i~~~~p~~~~r~~il~~~~~~~ 352 (418)
++.++.|+.+++..|+..++...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999998887643
No 93
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.25 E-value=1.4e-11 Score=95.51 Aligned_cols=73 Identities=34% Similarity=0.582 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Q 039866 337 SEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 409 (418)
Q Consensus 337 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 409 (418)
+.++|.+||+.+++++++..++++..||..|+||||+||.++|++|++.|++++...|+.+||..|+.++...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 5678999999999999998899999999999999999999999999999999999999999999999999864
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=1.9e-09 Score=104.34 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=116.9
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh---
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV--- 236 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~--- 236 (418)
+......++|.+..++.+.+ +.. ..++|+||+|+|||++++.+++..+..++.+++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 34455678999999999888 621 3799999999999999999999987777888765430
Q ss_pred ----hhh-------h------------------c--------c------hHHHHHHHHHHHHhC--CCeEEEEcCCCccc
Q 039866 237 ----QMF-------I------------------G--------D------GAKLVRDAFQLAKEK--SPCIIFIDEIDAIG 271 (418)
Q Consensus 237 ----~~~-------~------------------g--------~------~~~~~~~~~~~a~~~--~~~vl~iDEid~l~ 271 (418)
... + | . ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 000 0 0 0 001233344444432 38899999999985
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---------CChhhhCCCCceeEEEcCCCCHHHHH
Q 039866 272 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---------LDPALMRSGRLDRKIELPHPSEEARA 342 (418)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~---------l~~~l~r~~Rf~~~i~~~~p~~~~r~ 342 (418)
... ..++...+..+.+.. .++.+|+|++.... ....+. +|+...+.+++++.++..
T Consensus 151 ~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHH
T ss_pred ccC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHH
Confidence 310 112334444444431 25667777664321 111222 366678999999999999
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHH
Q 039866 343 RILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 343 ~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 380 (418)
+++...+.......+ ....+...+.|+ +.-+..++.
T Consensus 216 ~~l~~~~~~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~ 251 (357)
T 2fna_A 216 EFLRRGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGF 251 (357)
T ss_dssp HHHHHHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHhCCC-HHHHHHHHH
Confidence 999887654333322 237788888886 444555544
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.12 E-value=3.8e-09 Score=102.04 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=115.1
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhh---
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV--- 236 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~--- 236 (418)
|...-..++|.+..++.+.+.+.. ++.++|+||+|+|||++++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344456789999999999887631 14799999999999999999999875 6667664331
Q ss_pred ---------hhh---hc-------------------------chHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCC
Q 039866 237 ---------QMF---IG-------------------------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 279 (418)
Q Consensus 237 ---------~~~---~g-------------------------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 279 (418)
..+ .+ .....+..+...+....|.+|+|||++.+.... .
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~ 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----S 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----T
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----c
Confidence 000 00 001112222222222238899999999984310 0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC---------CCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhh
Q 039866 280 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---------ILDPALMRSGRLDRKIELPHPSEEARARILQIHSR 350 (418)
Q Consensus 280 ~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~---------~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~ 350 (418)
.....+...+..+++.. .++.+|+|+.... .....+. ||+...+.+++++.++..+++...+.
T Consensus 146 ~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHH
Confidence 01234445555555432 3566666665321 1112232 36667899999999999999987765
Q ss_pred cCCCC-CCCCHHHHHHHcCCCcHHHHHHHHH
Q 039866 351 KMTVH-PDVNFEELARSTDDFNGAQLKAVCV 380 (418)
Q Consensus 351 ~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 380 (418)
..... .......+...+.|+. .-+..++.
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 43322 2234556777777754 44555543
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.06 E-value=1.2e-10 Score=104.43 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCCCccccCcHHHHHHHHHHhhccccchHHHHhcCC-CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh
Q 039866 161 TEDYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGV-RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 236 (418)
Q Consensus 161 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~ 236 (418)
..+|+++++.+...+.+.+.+...+. ...- .++.+++|+||||||||++|+++++.+ +.+++.++++++.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVA------EYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHH------HCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHH------HhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 45788888766433333332221111 1110 123689999999999999999999987 6788889988776
Q ss_pred hhhhcchH-HHHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 237 QMFIGDGA-KLVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 237 ~~~~g~~~-~~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
..+..... ......+...... .+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 55432110 0112233333333 49999999765
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.06 E-value=4.8e-11 Score=91.30 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH-Hh-hhhcccc
Q 039866 339 EARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ-AK-KKASLNY 416 (418)
Q Consensus 339 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~-~~-~~~~~~~ 416 (418)
++|.+||+.+++++++..++++..+|..+.||||+||.++|++|++.|++++...|+.+||..|+.++. ++ ....++|
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 368899999999988888899999999999999999999999999999999999999999999999985 33 3356788
Q ss_pred CC
Q 039866 417 YA 418 (418)
Q Consensus 417 ~~ 418 (418)
|.
T Consensus 81 y~ 82 (82)
T 2dzn_B 81 YK 82 (82)
T ss_dssp --
T ss_pred hC
Confidence 74
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=3e-10 Score=97.15 Aligned_cols=105 Identities=14% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 274 (418)
+...++|+||+|+|||+++++++..+ +..++++++.++... .....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 34569999999999999999999987 666888887766543 012246799999999863
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-CCCCCC--hhhhCCCCceeEEEc
Q 039866 275 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN-RADILD--PALMRSGRLDRKIEL 333 (418)
Q Consensus 275 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn-~~~~l~--~~l~r~~Rf~~~i~~ 333 (418)
...+..++.+++..... +..++|.||| .|..+. +.+.+ |+..-..+
T Consensus 97 --------~~~~~~l~~li~~~~~~---g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 --------NEEQALLFSIFNRFRNS---GKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp --------SHHHHHHHHHHHHHHHH---TCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred --------hHHHHHHHHHHHHHHHc---CCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 22266777777754321 2232455666 454332 88887 77554333
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.91 E-value=2.6e-08 Score=117.90 Aligned_cols=184 Identities=16% Similarity=0.192 Sum_probs=118.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 278 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 278 (418)
..+.++.||+|||||++++++|+.+|.+++.++|++-+.. ..+..+|..+...+ +.++|||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 3468999999999999999999999999999999865432 23344555444332 59999999998
Q ss_pred CCCCHHHHHHHHHHHHhhc---------------CCCCCCCeEEEEEeCCC----CCCChhhhCCCCceeEEEcCCCCHH
Q 039866 279 VSGDREVQRTMLELLNQLD---------------GFSSDDRIKVIAATNRA----DILDPALMRSGRLDRKIELPHPSEE 339 (418)
Q Consensus 279 ~~~~~~~~~~l~~ll~~~~---------------~~~~~~~vivI~ttn~~----~~l~~~l~r~~Rf~~~i~~~~p~~~ 339 (418)
++++...+.+.+..+. .+.-..++.|++|.|+. ..+++++++ || +.+.+..|+.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 6677777755543210 01123467789999953 479999988 88 68999999999
Q ss_pred HHHHHHHHHhhcCCCCCCC-----C-HHHHHHHc-----CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 039866 340 ARARILQIHSRKMTVHPDV-----N-FEELARST-----DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 340 ~r~~il~~~~~~~~~~~~~-----~-~~~la~~~-----~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 407 (418)
...+|+-... ++...... . +..+.... ..|.-+.++.++..|+..-... .-...-+.+|+..+.
T Consensus 784 ~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~---~~e~~~l~~al~~~~ 858 (2695)
T 4akg_A 784 TIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF---GEGEKTVVESLKRVI 858 (2695)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS---CSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC---CcHHHHHHHHHHHhc
Confidence 8888764322 11111000 0 01111111 1356788888888776554332 122334455555443
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.90 E-value=1e-09 Score=105.20 Aligned_cols=70 Identities=24% Similarity=0.324 Sum_probs=48.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhhhhcch-HHHHHHHHHHHHhCCCeEEEEcCCCcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l 270 (418)
+.+++|+||||||||++|+++|+.+ +.+++.++++++...+.+.. .+.....+..... +.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 5689999999999999999999865 47888888888776554321 1111122233332 359999999765
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.90 E-value=2.6e-10 Score=108.67 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCCc--EEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~~--~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
++++..++|+||||||||+||.+++...+.+ |+.....+....+....+..+..+.+.+.... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3455568999999999999999999875444 55552233333333344555555666666554 9999999998654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChh
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPA 320 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~ 320 (418)
..+....+ .+.+.+.+++..+..+....++.+|+++|+ ...+++
T Consensus 198 ~~~~s~~G--~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 198 AGGNTTSG--GISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred cccccccc--hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 32211111 111223333333322222235678888884 444444
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.80 E-value=4.9e-09 Score=93.88 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=78.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHh--------C-CcEEEEccchhhhhhh----------cchHH--HHHHHHHHH--HhC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT--------N-ATFLKLAGPQLVQMFI----------GDGAK--LVRDAFQLA--KEK 257 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l--------~-~~~~~i~~s~l~~~~~----------g~~~~--~~~~~~~~a--~~~ 257 (418)
..|++|+||||||++|.+.+... | .+++..++.++..... ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 57899999999999998875442 4 6777777665532211 00000 001222221 233
Q ss_pred CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCC
Q 039866 258 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPS 337 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~ 337 (418)
.++||+|||++.+.+.+.+.. . . ..++..+.... ...+-+|.+|+++..++.++++ |+...++++.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~-e-~-------~rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS-K-I-------PENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC-C-C-------CHHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccccc-h-h-------HHHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 467999999999976542211 1 1 12333333222 3355678888889999999988 999999998764
Q ss_pred HH
Q 039866 338 EE 339 (418)
Q Consensus 338 ~~ 339 (418)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 103
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=98.79 E-value=3.5e-08 Score=79.08 Aligned_cols=95 Identities=26% Similarity=0.428 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEeec-----ccccc
Q 039866 42 LQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS-----YPSVV 116 (418)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 116 (418)
...|+++++.++++++.++++++.++.+|+.++++.+.++.+ .++++++ ++++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~---------------------~~iVk~s~g~~~~V~v~ 67 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDG---------------------RVVVKSSTGPKFVVNTS 67 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTS---------------------CEEEEETTSCEEEECBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCC---------------------EEEEEeCCCCEEEEEcc
Confidence 455677777778888888999999999999999999999965 5677665 67899
Q ss_pred cccCCCCCCCCCEEEEcCCcceeeecCCcchhhhhhccccc
Q 039866 117 GLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVD 157 (418)
Q Consensus 117 ~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (418)
+.|+++.++||+.+.++.++..+...+|..+++.+..|.+.
T Consensus 68 ~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 68 QYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp TTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred cccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 99999999999999999999999999999999988877653
No 104
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.73 E-value=1e-08 Score=91.33 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCC
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 275 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~ 275 (418)
++..+++|||||||||||++|.++|+.+...++.+..+.. .+. +..+. ...+++|||++.-+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s--~f~----------l~~l~--~~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS--HFW----------LEPLT--DTKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS--CGG----------GGGGT--TCSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc--hhh----------hcccC--CCCEEEEECCCchh----
Confidence 3445579999999999999999999998655433221100 000 01111 12499999998531
Q ss_pred CCCCCCCHHHHHHHHHHHHhh----cCCCCC----CCeEEEEEeCCC---CCCChhhhCCCCceeEEEcCC
Q 039866 276 DSEVSGDREVQRTMLELLNQL----DGFSSD----DRIKVIAATNRA---DILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 276 ~~~~~~~~~~~~~l~~ll~~~----~~~~~~----~~vivI~ttn~~---~~l~~~l~r~~Rf~~~i~~~~ 335 (418)
.......+..+++.. +..... ....+|.|||.. +.--+.+.+ |+. .+.|+.
T Consensus 117 ------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~ 178 (212)
T 1tue_A 117 ------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPN 178 (212)
T ss_dssp ------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCS
T ss_pred ------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCC
Confidence 112233344454431 110001 123588899963 222356777 884 677763
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.66 E-value=1.4e-07 Score=112.50 Aligned_cols=140 Identities=20% Similarity=0.335 Sum_probs=94.8
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh-CCcEEEEccchhhhhhhcchHHHHHHHHHHH----H------------hCCCe
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQLVQMFIGDGAKLVRDAFQLA----K------------EKSPC 260 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a----~------------~~~~~ 260 (418)
..+++||+||||||||.+++.+...+ +.+++.++++.... ...+...++.. + .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 34679999999999998876655444 66778888875432 12222233210 0 01225
Q ss_pred EEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-------CCCeEEEEEeCCCC-----CCChhhhCCCCce
Q 039866 261 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-------DDRIKVIAATNRAD-----ILDPALMRSGRLD 328 (418)
Q Consensus 261 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-------~~~vivI~ttn~~~-----~l~~~l~r~~Rf~ 328 (418)
|+||||++....... |.......|.++++...-... -.++.+|+|.|++. .+++.|+| ||.
T Consensus 1377 VlFiDDiNmp~~D~y-----GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKY-----GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEEETTTTCCCCCTT-----SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEEecccCCCCcccc-----ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 999999987543321 223466788888876322211 13678999999883 68999999 995
Q ss_pred eEEEcCCCCHHHHHHHHHHHhhc
Q 039866 329 RKIELPHPSEEARARILQIHSRK 351 (418)
Q Consensus 329 ~~i~~~~p~~~~r~~il~~~~~~ 351 (418)
++.++.|+.+....|+..++..
T Consensus 1450 -vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 6999999999999998766543
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.63 E-value=3.9e-07 Score=88.35 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=110.4
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CC-c--EEEEccchhhhhhhcchHHHHHHHHHHHH----hCCCeEEEEcCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NA-T--FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEI 267 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~-~--~~~i~~s~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEi 267 (418)
.++.+|||||+|+||++.++.+++.+ +. + .+.++.. ..++.+.+.+. ...+.|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 34579999999999999999998865 21 2 2222211 11233333332 244679999999
Q ss_pred Cc-ccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC------CCCChhhhCCCCceeEEEcCCCCHHH
Q 039866 268 DA-IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA------DILDPALMRSGRLDRKIELPHPSEEA 340 (418)
Q Consensus 268 d~-l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~------~~l~~~l~r~~Rf~~~i~~~~p~~~~ 340 (418)
|. +. ...++.|...++. ++.++++|.+++.+ ..+.+++.+ |. .++.+.+++..+
T Consensus 86 ~~kl~-----------~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 86 ENGPN-----------AAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQ 146 (343)
T ss_dssp SSCCC-----------TTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTH
T ss_pred CCCCC-----------hHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHH
Confidence 98 72 2345556655543 22345555555442 245677777 66 578999999999
Q ss_pred HHHHHHHHhhcCCCC-CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 039866 341 RARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 406 (418)
Q Consensus 341 r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 406 (418)
....++..+...++. ++.....++..+.| +.+++.+.+......+ +...||.+++...+...
T Consensus 147 l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 999998888766544 22335566665544 5566666666554443 34579999887776543
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.56 E-value=1.1e-07 Score=109.46 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh----hhhhc------------chHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV----QMFIG------------DGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~----~~~~g------------~~~~~~~~~~~~a~ 255 (418)
|++++.+++|+||||||||+||.+++.+. +..+..++..+.. ....| ..+...+.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37888899999999999999999998875 5567777755332 22222 23456667777888
Q ss_pred hCCCeEEEEcCCCccccc
Q 039866 256 EKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~ 273 (418)
...|++|+||+++.+.+.
T Consensus 1503 ~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred cCCCCEEEEcChhHhccc
Confidence 899999999999988764
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.52 E-value=6.7e-07 Score=106.75 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=92.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS 280 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 280 (418)
+..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|..+... .+..+||||+++
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl---------- 668 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL---------- 668 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS----------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC----------
Confidence 46789999999999999999999999999999865432 2233444444332 258899999998
Q ss_pred CCHHHHHHHHHHHHhh----------------cCCCCCCCeEEEEEeCC----CCCCChhhhCCCCceeEEEcCCCCHHH
Q 039866 281 GDREVQRTMLELLNQL----------------DGFSSDDRIKVIAATNR----ADILDPALMRSGRLDRKIELPHPSEEA 340 (418)
Q Consensus 281 ~~~~~~~~l~~ll~~~----------------~~~~~~~~vivI~ttn~----~~~l~~~l~r~~Rf~~~i~~~~p~~~~ 340 (418)
+.++...+.+.+..+ ..+.-+.++.|++|.|+ ...++..+.. || +.|.++.||.+.
T Consensus 669 -~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 669 -EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 667777776655421 11222346778999995 3479999998 88 679999999998
Q ss_pred HHHHHH
Q 039866 341 RARILQ 346 (418)
Q Consensus 341 r~~il~ 346 (418)
..+|+-
T Consensus 745 i~ei~L 750 (3245)
T 3vkg_A 745 IAQVML 750 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
No 109
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.48 E-value=7.9e-08 Score=94.35 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=73.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccc-c
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT-K 273 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~-~ 273 (418)
+++++..++|+||||+|||+++++++...+..++.++.+.-... ..+. ......++++|+++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------~~lg------~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------FELG------VAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------HHHG------GGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------HHHH------HhcchhHHHHHHHHHHHHHH
Confidence 56777889999999999999999999988777665443321000 0011 112235789999998865 2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCC
Q 039866 274 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH 335 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~ 335 (418)
+... .+. ... .+..+.+.+++ .+.|++++|+++.+ +++++|+|++..+....
T Consensus 233 r~l~--~~~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLP--SGQ-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCC--CCS-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhcc--ccC-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2111 011 111 11222233332 34578889999999 78889888877555533
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.43 E-value=3.7e-07 Score=84.87 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=67.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhhhhcchHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 278 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 278 (418)
.++++||||||||||++|+++|+.+.. +-.++.+. ..+ .+..+ ....+++.||.....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~~--~~k~i~l~Ee~~~~~------- 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFNDC--VDKMVIWWEEGKMTA------- 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGGG--SSCSEEEECSCCEET-------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------ccccc--cccEEEEeccccchh-------
Confidence 457999999999999999999997543 22222211 000 11111 222477778776551
Q ss_pred CCCCHHHHHHHHHHHHh----hcCCCC----CCCeEEEEEeCC-C----------CCCChhhhCCCCceeEEEcC-----
Q 039866 279 VSGDREVQRTMLELLNQ----LDGFSS----DDRIKVIAATNR-A----------DILDPALMRSGRLDRKIELP----- 334 (418)
Q Consensus 279 ~~~~~~~~~~l~~ll~~----~~~~~~----~~~vivI~ttn~-~----------~~l~~~l~r~~Rf~~~i~~~----- 334 (418)
+.+..+..++.. ++.... -.+..+|.|||. + +...+.|.+ |+ ..+.|+
T Consensus 162 -----d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p~ 233 (267)
T 1u0j_A 162 -----KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLDH 233 (267)
T ss_dssp -----TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCCT
T ss_pred -----HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCCc
Confidence 223344445531 111100 134567888885 1 234477887 87 577887
Q ss_pred ---CCCHHHHHHHHH
Q 039866 335 ---HPSEEARARILQ 346 (418)
Q Consensus 335 ---~p~~~~r~~il~ 346 (418)
+.+.++....+.
T Consensus 234 ~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 234 DFGKVTKQEVKDFFR 248 (267)
T ss_dssp TSCCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH
Confidence 566777777666
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.42 E-value=1.2e-06 Score=76.76 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=22.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
.+.|.||+|+||||+++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37899999999999999999987543
No 112
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.29 E-value=5.8e-06 Score=74.59 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceE
Q 039866 27 ASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCV 106 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (418)
++++++.++..+..+..+|.+.++..++++.++++++++|+.+|+.++++.+..+.. .+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~---------------------~a 113 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDD---------------------TV 113 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSS---------------------CE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCC---------------------EE
Confidence 678899999999999999999999999999999999999999999999999998754 44
Q ss_pred EEeec----ccccccccCCCCCCCCCEEEEcCCcceeeecCCcch
Q 039866 107 VLKTS----YPSVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEY 147 (418)
Q Consensus 107 ~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (418)
++.++ ++.+...|+...++||..|.+| .+..++..+|...
T Consensus 114 iV~s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~ 157 (251)
T 3m9b_A 114 DVFTSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEA 157 (251)
T ss_dssp EEECSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCC
T ss_pred EEEeCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCC
Confidence 55544 4677888999999999999996 5777788777543
No 113
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.15 E-value=5.7e-06 Score=80.82 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=51.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhh----hc------------chHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF----IG------------DGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~----~g------------~~~~~~~~~~~~a~ 255 (418)
|++++..++|+||||+|||++|..++... +.++++++...-.... .| ..+.....+...++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45666679999999999999999998764 5677777764321111 11 11222222223334
Q ss_pred hCCCeEEEEcCCCcccc
Q 039866 256 EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~ 272 (418)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 56788999999999975
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.12 E-value=7.9e-06 Score=73.79 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=29.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|++++..++|+||||+|||++++.++... +..++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34566679999999999999999999654 456665553
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.12 E-value=2.9e-06 Score=82.49 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=52.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh----hh------------cchHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----FI------------GDGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~----~~------------g~~~~~~~~~~~~a~ 255 (418)
|+++...++|+||||+|||+|+..++..+ +..+++++....... -+ ...+..+..+...++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566679999999999999999998875 567777776542111 00 111222222333344
Q ss_pred hCCCeEEEEcCCCcccc
Q 039866 256 EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~ 272 (418)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999998876
No 116
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=9.6e-06 Score=61.64 Aligned_cols=71 Identities=28% Similarity=0.490 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEEEeccCCCCchhhhcccccccccccCCceEEEeec-----ccccccccCCCCCCCCC
Q 039866 54 EKVKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTS-----YPSVVGLVDPDKLKPGD 128 (418)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~ 128 (418)
.+++.++++++.|+.+|+.++++.+.+|.+ .++++++ ++++.+.|+.+.++||+
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd~---------------------~~iVkss~g~~~~V~v~~~Vd~~~LkpG~ 60 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGER---------------------KVVVKSSTGPSFLVNVSHFVNPDDLAPGK 60 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEETT---------------------EEEEEETTSSEEEEEBCTTSCGGGCCTTC
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCCC---------------------EEEEEeCCCCeEEEEecCccCHHHCCCCC
Confidence 467788999999999999999999999976 6777754 67899999999999999
Q ss_pred EEEEcCCcceeeecCCc
Q 039866 129 LVGVNKDSYLILDTLPS 145 (418)
Q Consensus 129 ~~~~~~~~~~~~~~l~~ 145 (418)
.+.++.++..++..+|.
T Consensus 61 rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 61 RVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp EEEECTTTCCEEEECC-
T ss_pred EEEECCcccCHhhhhhh
Confidence 99999999999988874
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.09 E-value=2.1e-06 Score=83.42 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=51.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh----hhc------------chHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----FIG------------DGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~----~~g------------~~~~~~~~~~~~a~ 255 (418)
|+++...++|+||||+|||++|..++... +.++++++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45666679999999999999999998754 566777765432111 111 11222222233444
Q ss_pred hCCCeEEEEcCCCcccc
Q 039866 256 EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~ 272 (418)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 118
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.05 E-value=5.7e-05 Score=78.33 Aligned_cols=170 Identities=11% Similarity=0.084 Sum_probs=94.1
Q ss_pred CccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH-------hCCcEEEEccchh-
Q 039866 164 YNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ-------TNATFLKLAGPQL- 235 (418)
Q Consensus 164 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~-------l~~~~~~i~~s~l- 235 (418)
...++|.+..+..|.+.+... -...+.++|+||+|+|||++|+.+++. ....++.++.+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 456899999999999887421 012345899999999999999999642 2222344433221
Q ss_pred ----hhhh------hc-----------chHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 039866 236 ----VQMF------IG-----------DGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 293 (418)
Q Consensus 236 ----~~~~------~g-----------~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 293 (418)
...+ .+ ........+...... ..|.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~-------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H-------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H-------HH
Confidence 1111 11 011112222222222 25789999999753 1 12
Q ss_pred HhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcH
Q 039866 294 NQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNG 372 (418)
Q Consensus 294 ~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~ 372 (418)
.. + ..++.||.||....... .. . +....+..+.+++.++-.+++......-..........++..+.|+.-
T Consensus 252 ~~---l--~~~~~ilvTsR~~~~~~-~~-~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 252 KA---F--DSQCQILLTTRDKSVTD-SV-M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp HT---T--CSSCEEEEEESCGGGGT-TC-C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred HH---h--cCCCeEEEECCCcHHHH-hc-C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 22 1 23456777776543111 11 1 122112222478889999999877653111113346788888888643
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.99 E-value=7.6e-06 Score=74.61 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHH--h-------CCcEEEEccchh--hh----h--hhcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQ--T-------NATFLKLAGPQL--VQ----M--FIGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~--l-------~~~~~~i~~s~l--~~----~--~~g~--------------- 242 (418)
|+++...++|+||||+|||++++.++.. + +...++++.... .. . .+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566667999999999999999999985 2 456777765431 00 0 0110
Q ss_pred -hH---HHHHHHHHHHHhCCCeEEEEcCCCcccc
Q 039866 243 -GA---KLVRDAFQLAKEKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 243 -~~---~~~~~~~~~a~~~~~~vl~iDEid~l~~ 272 (418)
.. ..+..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 01 1122244455567789999999998764
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.98 E-value=6.2e-06 Score=80.28 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=51.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhh----hhcc-----------hHHHHHHHH-HHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----FIGD-----------GAKLVRDAF-QLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~----~~g~-----------~~~~~~~~~-~~a~ 255 (418)
|+++...++|+||||+|||++|..++... +.++++++....... ..|. ....+..+. ..++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999998764 567888876322111 1110 111122222 2334
Q ss_pred hCCCeEEEEcCCCcccc
Q 039866 256 EKSPCIIFIDEIDAIGT 272 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~ 272 (418)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999874
No 121
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.97 E-value=7.4e-06 Score=73.47 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccch
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 234 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~ 234 (418)
|++++..++|+||||+|||++++.++...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566667999999999999999999985577777777643
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.94 E-value=2.5e-05 Score=71.41 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=62.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHH--HH--hCCcEEEEccchhhhh------hhc-----------------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACA--AQ--TNATFLKLAGPQLVQM------FIG----------------------- 241 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala--~~--l~~~~~~i~~s~l~~~------~~g----------------------- 241 (418)
|++++..+.|.||+|+|||||++.++ .. .+...+.++....... .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 44566679999999999999999998 33 2444444443211100 000
Q ss_pred -------------chHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 039866 242 -------------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 308 (418)
Q Consensus 242 -------------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI 308 (418)
........+...+....|.+|+|||+-.+..... ........+..++..+.. .++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEE
Confidence 0111223334444567889999999977653110 123344446666655432 134566
Q ss_pred EEeCCCCCC
Q 039866 309 AATNRADIL 317 (418)
Q Consensus 309 ~ttn~~~~l 317 (418)
++|+.....
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 777665443
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.91 E-value=2.7e-05 Score=77.66 Aligned_cols=159 Identities=25% Similarity=0.266 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCC-CCCCHHHHHHHHHHHHhhcCC-----CCCCCeEEEEEe-----C
Q 039866 244 AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE-VSGDREVQRTMLELLNQLDGF-----SSDDRIKVIAAT-----N 312 (418)
Q Consensus 244 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~-----~~~~~vivI~tt-----n 312 (418)
....+.....+..+ +++++||||+++.+..+.. +.+...+|+.|+.+++..... -...++++|+|. |
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 34455566666444 3999999999986543211 112234778888888742110 124578899987 5
Q ss_pred CCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHH--------HHhhcC---CCC---CCCCHHHHHHH-------cCCCc
Q 039866 313 RADILDPALMRSGRLDRKIELPHPSEEARARILQ--------IHSRKM---TVH---PDVNFEELARS-------TDDFN 371 (418)
Q Consensus 313 ~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~--------~~~~~~---~~~---~~~~~~~la~~-------~~g~s 371 (418)
+.+ +-|.|+. ||+.++.|+.++.++..+|+. .+...+ ... .+..+..++.. +...-
T Consensus 316 ~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~G 392 (444)
T 1g41_A 316 PSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG 392 (444)
T ss_dssp GGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCG
T ss_pred hhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCC
Confidence 444 5588988 999999999999999999983 111111 111 22234555542 34444
Q ss_pred HHHHHHHHHHHHHHHHHh------CCCCccHHHHHHHHHHHH
Q 039866 372 GAQLKAVCVEAGMLALRR------DATEVNHEDFNEGIIQVQ 407 (418)
Q Consensus 372 ~~di~~l~~~A~~~A~~~------~~~~It~~d~~~Al~~~~ 407 (418)
++.++.++..+...+..+ ....||.+++...+....
T Consensus 393 aR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 393 ARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 566666555544433222 123588998887775543
No 124
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.91 E-value=0.00034 Score=63.17 Aligned_cols=161 Identities=18% Similarity=0.183 Sum_probs=87.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc--------hhhhhhh----------cc--hHHHHHHHHHHHHhC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP--------QLVQMFI----------GD--GAKLVRDAFQLAKEK 257 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s--------~l~~~~~----------g~--~~~~~~~~~~~a~~~ 257 (418)
.+++.|+||||||+++-.+|..+ |..++.++.. .+..... |. .+..+..++ ..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----KA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----hc
Confidence 58999999999999999998876 6666555542 1111110 00 111222221 23
Q ss_pred CCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------------CCCCCh
Q 039866 258 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------------ADILDP 319 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~------------------~~~l~~ 319 (418)
.|.++++||+....... ..+......+..++. ..+-+++|+|. .+.++.
T Consensus 84 ~pdlvIVDElG~~~~~~-----~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPG-----SRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCTT-----CSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCccc-----chhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 57899999987642111 112222222333333 23447788873 245667
Q ss_pred hhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 039866 320 ALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 387 (418)
Q Consensus 320 ~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 387 (418)
.++. +.+.+..+..|+.+-+ +......-...+..-..+... |+...|..|-.-|...+.
T Consensus 151 ~~~~--~a~~v~lvD~~p~~l~----~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRELL----ERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTAA 209 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHHHH----HHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHHHH----HHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHHH
Confidence 7776 6766777777766532 222232222233333344443 677777777665666554
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.91 E-value=0.00011 Score=82.33 Aligned_cols=170 Identities=12% Similarity=0.134 Sum_probs=98.2
Q ss_pred CCccccCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh-------CCcEEEEccchh
Q 039866 163 DYNDIGGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGPQL 235 (418)
Q Consensus 163 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l-------~~~~~~i~~s~l 235 (418)
....++|.+..++.|.+.+...- ..++-+.|+|+.|+|||+||+.+++.. ...++.++.+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34568999999999999873220 233458899999999999999987752 222334443321
Q ss_pred -----hhh-------hh---------cchHHHHHHHHHHHHh--CCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHH
Q 039866 236 -----VQM-------FI---------GDGAKLVRDAFQLAKE--KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 292 (418)
Q Consensus 236 -----~~~-------~~---------g~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 292 (418)
... .. ......+...+..... ..+.+|+||+++.. . .
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------~---~---- 250 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------W---V---- 250 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------H---H----
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------H---H----
Confidence 000 00 0011112222222222 23679999999854 1 1
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCC-CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCc
Q 039866 293 LNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPH-PSEEARARILQIHSRKMTVHPDVNFEELARSTDDFN 371 (418)
Q Consensus 293 l~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s 371 (418)
+ ..+ ..+..||.||..+..... .. .....+.++. ++.++-.+++..+..............+++.+.|+.
T Consensus 251 ~---~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 251 L---KAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp H---TTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred H---Hhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 1 112 234567888876543211 11 2234577775 889998999987764333222334678888888864
Q ss_pred H
Q 039866 372 G 372 (418)
Q Consensus 372 ~ 372 (418)
-
T Consensus 322 L 322 (1249)
T 3sfz_A 322 L 322 (1249)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.90 E-value=2.3e-05 Score=67.93 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..++|+||||+||||+++.++..++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 458999999999999999999999988887665433
No 127
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.89 E-value=1.2e-05 Score=77.31 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchh--hh------hhhcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL--VQ------MFIGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l--~~------~~~g~--------------- 242 (418)
|+++...++|+||||+|||++|..++... +..+++++...- .. ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 55666679999999999999999999864 456777776542 11 00110
Q ss_pred -hH---HHHHHHHHHHHh-CCCeEEEEcCCCcccc
Q 039866 243 -GA---KLVRDAFQLAKE-KSPCIIFIDEIDAIGT 272 (418)
Q Consensus 243 -~~---~~~~~~~~~a~~-~~~~vl~iDEid~l~~ 272 (418)
.+ ..+..+...++. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122334445555 6789999999999864
No 128
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.86 E-value=2.1e-05 Score=79.32 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=36.0
Q ss_pred CCCCCcccc-CcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 160 PTEDYNDIG-GLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 160 ~~~~~~~i~-G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+.+|+++- +|..++..+...+.. ....++|.||||||||+++.+++..+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445677664 666677666665521 22379999999999999999999876
No 129
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.84 E-value=1.6e-05 Score=77.07 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=51.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchh--hhh------hhcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL--VQM------FIGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l--~~~------~~g~--------------- 242 (418)
|++++..++|+||||+|||++|..++... +..+++++.... ... ..|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 55666669999999999999999999862 456777776432 000 0010
Q ss_pred -hH---HHHHHHHHHHHh--CCCeEEEEcCCCcccc
Q 039866 243 -GA---KLVRDAFQLAKE--KSPCIIFIDEIDAIGT 272 (418)
Q Consensus 243 -~~---~~~~~~~~~a~~--~~~~vl~iDEid~l~~ 272 (418)
.+ ..+..+...++. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11 112223344555 6789999999999864
No 130
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.82 E-value=6.7e-06 Score=72.40 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=22.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i 230 (418)
-++++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999996666543 4554443
No 131
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.81 E-value=2.4e-05 Score=74.22 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=50.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh-----CCcEEEEccchhhhh----hhc------------chHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQM----FIG------------DGAKLVRDAFQL 253 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l-----~~~~~~i~~s~l~~~----~~g------------~~~~~~~~~~~~ 253 (418)
|+++. .++|+||||+|||+|+-.++... +..+++++..+-... -.| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45565 68999999999999998887654 567888886532211 011 111110112222
Q ss_pred ---HHhCCCeEEEEcCCCccccc
Q 039866 254 ---AKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 254 ---a~~~~~~vl~iDEid~l~~~ 273 (418)
++...|.+|+||=|..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 35668999999999999753
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.80 E-value=9.1e-05 Score=67.42 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|++++..++|+||||+|||+++..++... +.++++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45666679999999999999999887653 556666654
No 133
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.76 E-value=2.7e-05 Score=89.93 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=57.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhhhhh----c------------chHHHHHHHHHHHH
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI----G------------DGAKLVRDAFQLAK 255 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~~~~----g------------~~~~~~~~~~~~a~ 255 (418)
|++++.+++|+||||||||++|.+++.+. +.+.++++..+...... | ..+...+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57788889999999999999999998764 77888888765443322 1 11222333334455
Q ss_pred hCCCeEEEEcCCCcccccC
Q 039866 256 EKSPCIIFIDEIDAIGTKR 274 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~ 274 (418)
...|.+|+||++..+.+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred hCCCCEEEECCcccccccc
Confidence 6779999999999996543
No 134
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.75 E-value=6.1e-05 Score=68.28 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=42.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEccch-------hhhhhhcch-----HHHHHHHHHHHHh----CCCeE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ-------LVQMFIGDG-----AKLVRDAFQLAKE----KSPCI 261 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~-------l~~~~~g~~-----~~~~~~~~~~a~~----~~~~v 261 (418)
-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. ......+++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 47889999999999999888766 55566553221 1111 1110 0011234555544 35789
Q ss_pred EEEcCCCcc
Q 039866 262 IFIDEIDAI 270 (418)
Q Consensus 262 l~iDEid~l 270 (418)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999887
No 135
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.72 E-value=3.2e-05 Score=76.36 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccchhhh--------hhhcc---------------
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLVQ--------MFIGD--------------- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s~l~~--------~~~g~--------------- 242 (418)
|+.+...++|+||||+|||+|++.++-.. +...++++...... ..+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666679999999999999999876432 24477776543110 00110
Q ss_pred -h---HHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q 039866 243 -G---AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 273 (418)
Q Consensus 243 -~---~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 273 (418)
. ...+..+...+....|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 111223334445567899999999887653
No 136
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.71 E-value=0.00043 Score=70.92 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=56.5
Q ss_pred CeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC--CCChhhhCCCCceeEEEcCCC
Q 039866 259 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD--ILDPALMRSGRLDRKIELPHP 336 (418)
Q Consensus 259 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~--~l~~~l~r~~Rf~~~i~~~~p 336 (418)
+-+|+|||++.+.... ..++...+.++..... .-.+.+|++|.+|. .++..++. -|...|.|...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999886422 2355566667766643 34688899999887 78888887 78889999999
Q ss_pred CHHHHHHHHH
Q 039866 337 SEEARARILQ 346 (418)
Q Consensus 337 ~~~~r~~il~ 346 (418)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888877774
No 137
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=1.9e-05 Score=70.19 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=29.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++..++|.||||+||||+++.++..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 45567999999999999999999999998876543
No 138
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.68 E-value=2.5e-05 Score=70.49 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
|+++...+.|.||+|+|||++++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566679999999999999999999853
No 139
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.68 E-value=3.8e-05 Score=74.57 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------CCcEEEEccc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGP 233 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------~~~~~~i~~s 233 (418)
|+++...+.|+||||+|||+|++.++... +..+++++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 56666679999999999999999999876 2455777654
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.67 E-value=2.1e-05 Score=68.74 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+..++|+||||+|||++++.+|+.++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 456999999999999999999999998887554
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.66 E-value=8.7e-05 Score=72.14 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=45.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc-chhhh---------hhhcchHHHHHHHHHHHHhCCCeEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG-PQLVQ---------MFIGDGAKLVRDAFQLAKEKSPCIIF 263 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~-s~l~~---------~~~g~~~~~~~~~~~~a~~~~~~vl~ 263 (418)
+...++|.||+|+||||+.++++..+ +..++.+.. .++.. ..++.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 44469999999999999999998865 334443322 11110 01111111233466677778899999
Q ss_pred EcCCC
Q 039866 264 IDEID 268 (418)
Q Consensus 264 iDEid 268 (418)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99984
No 142
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.64 E-value=0.00043 Score=71.26 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=91.0
Q ss_pred cCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHH----HhCCc---EEEEccchh-----
Q 039866 168 GGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAA----QTNAT---FLKLAGPQL----- 235 (418)
Q Consensus 168 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~----~l~~~---~~~i~~s~l----- 235 (418)
+|.+..++.|.+.+... +-...+.+.|+|++|+|||+||+.+++ ..... .+.++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999887321 012345688999999999999999997 22221 223333321
Q ss_pred ---hhhh---hcch-------------HHH-HHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHh
Q 039866 236 ---VQMF---IGDG-------------AKL-VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 295 (418)
Q Consensus 236 ---~~~~---~g~~-------------~~~-~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 295 (418)
.... ++.. ... ...+........+.+|+||+++.. + .+ .+ ..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-------------~---~~-~~-~~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-------------E---TI-RW-AQ 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-------------H---HH-HH-HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-------------h---hh-cc-cc
Confidence 0000 1100 111 222223333323789999999864 1 11 11 11
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhhCCCCceeEEEcCCCCHHHHHHHHHHHhhcCCCCCC--CCHHHHHHHcCCCc
Q 039866 296 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD--VNFEELARSTDDFN 371 (418)
Q Consensus 296 ~~~~~~~~~vivI~ttn~~~~l~~~l~r~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~g~s 371 (418)
. .+..||.||...... ... . .....+.+++++.++-.+++..+......... .....++..+.|..
T Consensus 263 ~------~gs~ilvTTR~~~v~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEIS-NAA-S--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp H------TTCEEEEEESBGGGG-GGC-C--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred c------CCCEEEEEcCCHHHH-HHc-C--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 1 234577777743211 111 1 13357899999999999999877432211011 12445666777654
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.63 E-value=2.3e-05 Score=68.77 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
..+..++|.|+||+||||+++.++..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 4455689999999999999999999998877654
No 144
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.59 E-value=4.1e-05 Score=73.35 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=50.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---------------C----CcEEEEccchh--hhh---h---hcc-----
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------------N----ATFLKLAGPQL--VQM---F---IGD----- 242 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---------------~----~~~~~i~~s~l--~~~---~---~g~----- 242 (418)
|+++...++|+||||+|||++|..++... + .++++++...- ... + .|-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45566669999999999999999998752 2 56777775432 110 0 010
Q ss_pred -----------hH---HHHHHHHHHHHh-CCCeEEEEcCCCcccc
Q 039866 243 -----------GA---KLVRDAFQLAKE-KSPCIIFIDEIDAIGT 272 (418)
Q Consensus 243 -----------~~---~~~~~~~~~a~~-~~~~vl~iDEid~l~~ 272 (418)
.+ ..+..+...++. ..+.+|+||.+..+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 01 112234444555 6678999999998864
No 145
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.58 E-value=4.7e-05 Score=66.22 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=28.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.+..++|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 455799999999999999999999998877644
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.55 E-value=0.00017 Score=66.54 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=32.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
..|..++|.||||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345568999999999999999999999866777776654
No 147
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.51 E-value=6.3e-05 Score=77.90 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
..++|+||||||||+++.+++..+ +.+++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 468999999999999999998865 556655543
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.49 E-value=6.2e-05 Score=64.56 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876554
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=4.3e-05 Score=66.95 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
+.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455569999999999999999999987777777776554
No 150
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.49 E-value=6.1e-05 Score=65.67 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.|+||+|||++|+.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999998876543
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.47 E-value=5.4e-05 Score=66.29 Aligned_cols=32 Identities=41% Similarity=0.575 Sum_probs=26.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH-hCCcEEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ-TNATFLKL 230 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~-l~~~~~~i 230 (418)
+..++|+|+||||||++++.++.. ++.+++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 445999999999999999999998 67666543
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.46 E-value=6.6e-05 Score=64.99 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=26.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
.++|.||||+||||+++.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 153
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=8.4e-05 Score=63.95 Aligned_cols=31 Identities=35% Similarity=0.641 Sum_probs=26.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
+..+.|+||||+||||+++.++..++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3469999999999999999999999876543
No 154
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.45 E-value=0.00011 Score=68.72 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
|+++...++|+||||+|||+|++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566679999999999999999998744
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.42 E-value=0.0002 Score=71.99 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~ 232 (418)
|+.++.-++|.|+||+|||+++..++... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56777779999999999999999998754 457777664
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.39 E-value=8.1e-05 Score=63.90 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.+++|.|+|||||||+++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3699999999999999999999999988654
No 157
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.38 E-value=0.00043 Score=62.95 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=29.3
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHH----hCCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQ----TNATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~----l~~~~~~i~~ 232 (418)
|++++.-++|+|+||+|||++|..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566667999999999999999987653 2566766654
No 158
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.37 E-value=9.5e-05 Score=65.50 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=27.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
..++|.|+||+||||+|+.++..++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999999876554
No 159
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00015 Score=68.38 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=30.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
.|..++|.||||+||||+++.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34458999999999999999999988656677776444
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.35 E-value=9.1e-05 Score=64.99 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=28.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
++..++|.|+||+||||+++.+++.++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4456999999999999999999999988765443
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.35 E-value=0.00071 Score=68.63 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=50.9
Q ss_pred eEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC--CCChhhhCCCCceeEEEcCCCC
Q 039866 260 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD--ILDPALMRSGRLDRKIELPHPS 337 (418)
Q Consensus 260 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~--~l~~~l~r~~Rf~~~i~~~~p~ 337 (418)
-+|+|||+..+.... ..++...+..+..... ...+.+|++|.++. .++..++. -|...|.|...+
T Consensus 299 ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gR----a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-------GKKVEELIARLAQKAR----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp EEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCG----GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred EEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhh----hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 489999998775311 1233444444444432 23567788888876 68887877 788888999999
Q ss_pred HHHHHHHHHH
Q 039866 338 EEARARILQI 347 (418)
Q Consensus 338 ~~~r~~il~~ 347 (418)
..+...++..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 8888887753
No 162
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.34 E-value=0.00029 Score=70.16 Aligned_cols=73 Identities=22% Similarity=0.189 Sum_probs=50.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh----------h---------hh-cchHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----------M---------FI-GDGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~----------~---------~~-g~~~~~~~~~~~~a 254 (418)
+|..+++.||+|+||||++..+|..+ +..+..+++..+.. . .. .+........+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35568999999999999999999876 56666666543211 0 01 12334445667777
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999988655
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.34 E-value=0.00011 Score=67.82 Aligned_cols=32 Identities=38% Similarity=0.426 Sum_probs=28.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
.++|.||||||||++|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999988877664
No 164
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.34 E-value=0.0011 Score=58.45 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEE---ccc------hhhhhhhc-------------c-----hHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKL---AGP------QLVQMFIG-------------D-----GAKLVRD 249 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i---~~s------~l~~~~~g-------------~-----~~~~~~~ 249 (418)
..+++|+++|.|||++|-.+|-.. |..+..+ .+. .+...+ + . .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 469999999999999999998765 6666655 221 233332 1 0 0122233
Q ss_pred HHHHHH----hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhCCC
Q 039866 250 AFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSG 325 (418)
Q Consensus 250 ~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~l~~~l~r~~ 325 (418)
.+..++ ...+.+|+|||+.....-. -.. ...+++++.. ...+.-||.|+|.+ ++.++.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g-------~l~-~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e-- 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYD-------YLP-LEEVISALNA-----RPGHQTVIITGRGC---HRDILD-- 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTT-------SSC-HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCC-------CCC-HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--
Confidence 344333 3557899999996532111 001 1234555542 23456688898864 456655
Q ss_pred CceeEEEc
Q 039866 326 RLDRKIEL 333 (418)
Q Consensus 326 Rf~~~i~~ 333 (418)
.-|.+-++
T Consensus 170 ~AD~VTem 177 (196)
T 1g5t_A 170 LADTVSEL 177 (196)
T ss_dssp HCSEEEEC
T ss_pred hCcceeee
Confidence 55554444
No 165
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.34 E-value=0.00014 Score=64.36 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
+..++|.||+|+||||+++.++..++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 456999999999999999999999987766533
No 166
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.34 E-value=0.0001 Score=66.32 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=28.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
++..++|.|+||+||||+++.++..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345689999999999999999999998766544
No 167
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.33 E-value=0.00023 Score=81.38 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH---hCCcEEEEccch-----hhhh-----------hhcchHHHHHHHHHHHHhC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ---TNATFLKLAGPQ-----LVQM-----------FIGDGAKLVRDAFQLAKEK 257 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~---l~~~~~~i~~s~-----l~~~-----------~~g~~~~~~~~~~~~a~~~ 257 (418)
+..+.+.+|||+|||||++|-.++.+ .+.....++... +..+ .....+..+..+...++..
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~ 1508 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1508 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcC
Confidence 33344999999999999999888654 377777887642 2111 2334567777788888999
Q ss_pred CCeEEEEcCCCcccccCCCCCCCC--CHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeC
Q 039866 258 SPCIIFIDEIDAIGTKRFDSEVSG--DREVQ-RTMLELLNQLDGFSSDDRIKVIAATN 312 (418)
Q Consensus 258 ~~~vl~iDEid~l~~~~~~~~~~~--~~~~~-~~l~~ll~~~~~~~~~~~vivI~ttn 312 (418)
.+++|++|-+..|.+...-.+.-+ +...+ +.+.+.|..+.+.-...++.+|++..
T Consensus 1509 ~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1509 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp CCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 999999999999988753221111 11222 33445555444333334566666554
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.33 E-value=0.00013 Score=62.73 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.++|.|+||+|||++++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999876643
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.32 E-value=0.00033 Score=64.84 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCceeecCCCCcHHHHHHHHHHH---hCCcEEEEccchhh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ---TNATFLKLAGPQLV 236 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~---l~~~~~~i~~s~l~ 236 (418)
..++|.|+||+||||+|+.++.. .+.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 35899999999999999999998 67787766665543
No 170
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.0001 Score=63.00 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.++|.||||+||||+|+.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888876654
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=9.1e-05 Score=64.79 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=26.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
..++|.|+||+||||+|+.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999876643
No 172
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.31 E-value=0.00091 Score=66.49 Aligned_cols=196 Identities=13% Similarity=0.157 Sum_probs=96.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh----------hhh---------c-chHHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----------MFI---------G-DGAKLVRDAFQLAK 255 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~----------~~~---------g-~~~~~~~~~~~~a~ 255 (418)
|..+++.||+|+||||++..+|..+ +..+..+++..+.. ... + ............+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4568999999999999999999876 56666665432210 000 0 11222334555565
Q ss_pred hCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC-CC--hhhhCCCCceeEEE
Q 039866 256 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI-LD--PALMRSGRLDRKIE 332 (418)
Q Consensus 256 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~~-l~--~~l~r~~Rf~~~i~ 332 (418)
...+.+++||....+... .+......+..+..... ...++++..+..... .+ ..+.....+ ..+.
T Consensus 177 ~~~~DvvIIDTaGr~~~~-------~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gVI 244 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG-------EETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAYDLASRFHQASPI-GSVI 244 (433)
T ss_dssp TTTCSEEEEEECCCSSSC-------CTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEEE
T ss_pred hcCCCEEEEECCCCcccc-------CCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHHHHHHHHhcccCC-cEEE
Confidence 567889999988654200 12233344444444432 234445544432221 11 112110011 2334
Q ss_pred cCCCCHH----HHHHHHHHHhhcC-------CCC--CCCCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---------C
Q 039866 333 LPHPSEE----ARARILQIHSRKM-------TVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR---------D 390 (418)
Q Consensus 333 ~~~p~~~----~r~~il~~~~~~~-------~~~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~---------~ 390 (418)
+.-.|.. ....+....-..+ .+. ...+...++.+.-|+ +|+..++..|...-... .
T Consensus 245 lTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~k~~ 322 (433)
T 3kl4_A 245 ITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKMEDVM 322 (433)
T ss_dssp EECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC--------------
T ss_pred EecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444432 2233333211110 111 123456666655443 37777776654322111 1
Q ss_pred CC--CccHHHHHHHHHHHHH
Q 039866 391 AT--EVNHEDFNEGIIQVQA 408 (418)
Q Consensus 391 ~~--~It~~d~~~Al~~~~~ 408 (418)
.. ..|.+||...++.+..
T Consensus 323 ~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 323 EGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp -----CCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 22 6899999999888764
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.30 E-value=0.00015 Score=67.41 Aligned_cols=72 Identities=26% Similarity=0.456 Sum_probs=43.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccc-hhh---------hhhhcchHHHHHHHHHHHHhCCCeEE
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGP-QLV---------QMFIGDGAKLVRDAFQLAKEKSPCII 262 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s-~l~---------~~~~g~~~~~~~~~~~~a~~~~~~vl 262 (418)
.+...++|.||+|+||||++++++... ...++....+ ++. ...+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 455569999999999999999999865 2333322211 110 00011111123445555555678999
Q ss_pred EEcCCC
Q 039866 263 FIDEID 268 (418)
Q Consensus 263 ~iDEid 268 (418)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.30 E-value=0.00039 Score=69.64 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=31.0
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~ 232 (418)
|+.++.-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 66777779999999999999999998754 457777665
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.29 E-value=0.0001 Score=66.72 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.+..++|.||||+||||+++.++..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 445699999999999999999999998766544
No 176
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.26 E-value=0.00067 Score=61.92 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=27.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
.++++||+|+|||.++.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999998887666666543
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.00026 Score=62.43 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.1
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.24 E-value=0.00011 Score=64.00 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
..++|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999886
No 179
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00014 Score=64.03 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
+..++|.|+||+||||+|+.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 44699999999999999999999998665443
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.23 E-value=0.00065 Score=64.83 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|+.++.-++|.|+||+|||++|..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56777779999999999999999998764 456766664
No 181
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.23 E-value=0.00017 Score=61.70 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
.++|.|+||+|||++++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999877643
No 182
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.23 E-value=0.00015 Score=64.89 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.0
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
++|.||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998776655
No 183
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00018 Score=62.64 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=25.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
..++|.||||+||||+++.+++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 35899999999999999999999886554
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.22 E-value=0.00017 Score=65.12 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
+.++.++|.||||+||+|.|+.|++.++.+ .++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 455568899999999999999999998765 4555555543
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.22 E-value=0.00016 Score=64.67 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=26.0
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
++|.||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998776654
No 186
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00012 Score=65.86 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=26.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
.+..++|.||||+||||+++.++..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4457999999999999999999999987554
No 187
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.22 E-value=0.00013 Score=65.69 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
..++|.|+||+||||+++.++..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999998776654
No 188
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00014 Score=66.72 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
+|..++|.||||+||||+|+.+++.++.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 555799999999999999999999988766544
No 189
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.21 E-value=0.00012 Score=63.43 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=23.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
+..++|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 345889999999999999999999998876
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.20 E-value=0.00017 Score=62.99 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
..++|.|+||+||||+++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4589999999999999999999998766544
No 191
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.20 E-value=0.00019 Score=65.31 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
+..++|.|+||+||||+|+.|+..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34589999999999999999999998766554
No 192
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.19 E-value=0.00062 Score=64.69 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=46.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh-------hh-------------hcchHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ-------MF-------------IGDGAKLVRDAFQL 253 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~-------~~-------------~g~~~~~~~~~~~~ 253 (418)
.++..++|.||+|+||||++..+|..+ +..+..+++..+.. .+ .++........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345568999999999999999999876 55566555432211 01 01112222234445
Q ss_pred HHhCCCeEEEEcCCCc
Q 039866 254 AKEKSPCIIFIDEIDA 269 (418)
Q Consensus 254 a~~~~~~vl~iDEid~ 269 (418)
+....|.+++||+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5567788999998864
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00018 Score=61.98 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=26.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
+..++|.||+|+||||+++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458999999999999999999988765543
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.18 E-value=0.00022 Score=63.15 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
++..+.|.||+|+||||+++.++..++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4556889999999999999999999876443
No 195
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00013 Score=63.01 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=24.4
Q ss_pred CceeecCCCCcHHHHHHHHHH-HhCCcEEEEccc
Q 039866 201 GVLLYGPPGTGKTLMARACAA-QTNATFLKLAGP 233 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~-~l~~~~~~i~~s 233 (418)
.++|.||||+||||+|+.++. .++ +..++..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d 35 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPG--FYNINRD 35 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT--EEEECHH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCC--cEEecHH
Confidence 488999999999999999998 444 4444443
No 196
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.16 E-value=0.00017 Score=63.81 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.|+||+||||+++.+++.++.+++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 4889999999999999999999987655443
No 197
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00019 Score=70.26 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=44.5
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccc-hhh-hh---hh-----cchHHHHHHHHHHHHhCCCeE
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGP-QLV-QM---FI-----GDGAKLVRDAFQLAKEKSPCI 261 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s-~l~-~~---~~-----g~~~~~~~~~~~~a~~~~~~v 261 (418)
+.++..++|.||+|+||||++++++... ...++.+..+ ++. .. ++ |.....+...+..+-...|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 3455569999999999999999999865 2344333321 110 00 01 111112234455555668999
Q ss_pred EEEcCCC
Q 039866 262 IFIDEID 268 (418)
Q Consensus 262 l~iDEid 268 (418)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999984
No 198
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.09 E-value=0.00031 Score=62.82 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=27.9
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
++|.||||+||+|.|+.|++.++.+. ++..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 78999999999999999999998765 45555543
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.09 E-value=0.00031 Score=60.87 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
++..+.|.|++|+||||+++.++..+ +.+++.++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 34458899999999999999999987 8888887754
No 200
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.07 E-value=0.00013 Score=70.53 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=25.9
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
+++|.||||+|||++++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999998877744
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.06 E-value=0.00027 Score=61.61 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC---CcEEEEccchh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQL 235 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s~l 235 (418)
.++|.||||+||||+++.+++.++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 378999999999999999999875 33555554433
No 202
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.05 E-value=0.00033 Score=62.04 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=29.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
.++..+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345568899999999999999999987 544445654433
No 203
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.03 E-value=0.0003 Score=62.95 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=26.0
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
++|.||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998776554
No 204
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.01 E-value=0.0015 Score=60.79 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||+++++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455568899999999999999999754
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.99 E-value=0.00049 Score=60.05 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=26.9
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLA 231 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~ 231 (418)
+.|.|+||+||||+++.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88887665
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.97 E-value=0.00042 Score=61.12 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=28.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-CCcEEEEcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAG 232 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~ 232 (418)
+..+.|.|++|+||||+++.+++.+ +.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4468999999999999999999998 567776553
No 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.97 E-value=0.0037 Score=68.23 Aligned_cols=43 Identities=30% Similarity=0.345 Sum_probs=34.9
Q ss_pred cCcHHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 168 GGLEKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 168 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+|.+..+..|.+.+... .+.+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 79999999998877321 23456899999999999999999863
No 208
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.96 E-value=0.00046 Score=60.75 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=25.3
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
+.|.|++|+||||+++.+++.++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999887654
No 209
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.95 E-value=0.00043 Score=66.09 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=29.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
..++|+||+|||||++++.+|+.++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 358999999999999999999999988887764
No 210
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.95 E-value=0.00052 Score=61.69 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
..+.|.||+|+||||+++.++..++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35889999999999999999999887654
No 211
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.95 E-value=0.00041 Score=62.63 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=25.2
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
++|.||||+||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998655443
No 212
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.94 E-value=0.00038 Score=64.16 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
...+.|.||+|+||||+++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999998776543
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.93 E-value=0.00039 Score=61.48 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=25.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.+.|.||+|+||||+++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 876665443
No 214
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.90 E-value=0.0028 Score=64.79 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh----hhh----------h-----h-------c--ch
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL----VQM----------F-----I-------G--DG 243 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l----~~~----------~-----~-------g--~~ 243 (418)
++.+...++|.||+|+|||+|++.++... +.+++++...+- ... + . . ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45666679999999999999999998765 444545443211 100 0 0 0 12
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q 039866 244 AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 314 (418)
Q Consensus 244 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~ 314 (418)
....+.+...+....|.+|+||=+..+... .. ..+....+..++..+.. .++.+|+++...
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-----~~-~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-----VS-NNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-----SC-HHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-----CC-hHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 233455666777788999999955444221 00 12255566666665532 123445555443
No 215
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.89 E-value=0.00066 Score=59.42 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.9
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLA 231 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~ 231 (418)
+.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999998 88887654
No 216
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.89 E-value=0.00043 Score=59.76 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.2
Q ss_pred CCCCceeecCCCCcHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~laka 218 (418)
++.-+.|.||+|+||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445589999999999999994
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.86 E-value=0.00064 Score=60.33 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
.++..++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999874
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.84 E-value=0.0022 Score=59.89 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||+++++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568899999999999999998854
No 219
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.00064 Score=61.90 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=26.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
+..+.|.||||+|||++++.++..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468999999999999999999999876543
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00062 Score=60.15 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 238 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~~ 238 (418)
.+.|+|++||||||+++.++..+|.+++ ++..+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~ 49 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHE 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHH
Confidence 3789999999999999999999887765 44444443
No 221
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.80 E-value=0.014 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.5
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999988877643
No 222
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.79 E-value=0.0043 Score=62.05 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|+.++.-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 66777779999999999999999998765 667777764
No 223
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.79 E-value=0.0021 Score=66.89 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999988876654
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.00055 Score=65.80 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=46.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccc-hhh----hh---hhcchHHHHHHHHHHHHhCCCeEEEEcCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGP-QLV----QM---FIGDGAKLVRDAFQLAKEKSPCIIFIDEI 267 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s-~l~----~~---~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 267 (418)
+...++|.||+|+||||++++++.... ...+.++.. ++. .. ++.......+..+..+....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 455799999999999999999998763 334555432 111 01 11001112334566666778999999998
Q ss_pred Cc
Q 039866 268 DA 269 (418)
Q Consensus 268 d~ 269 (418)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.78 E-value=0.00076 Score=59.55 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=27.1
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.+.|.|++|+|||++++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999997776543
No 226
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.00082 Score=59.46 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=23.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
..++|.|+||+||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358899999999999999999998763
No 227
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.78 E-value=0.0034 Score=67.26 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=34.8
Q ss_pred CCCCCccccCcHHHHHHHHHHhhccccch--HHHHhcCCCCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 160 PTEDYNDIGGLEKQIQELIEAIVLPMTHK--ERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 160 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~--~~~~~~g~~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+...|+++.-.....+.+...-..|.... ..... +.....+++.||+|+|||+++..+...
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44567777544555555544433342211 11111 123346999999999999977777544
No 228
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.77 E-value=0.00076 Score=61.70 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=26.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
.+..+.|.||+|+||||+++.+++.++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3457999999999999999999999876543
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.77 E-value=0.0037 Score=58.98 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGP 233 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s 233 (418)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45568999999999999999999765 4466666653
No 230
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.76 E-value=0.0003 Score=62.51 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNA 225 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~ 225 (418)
.+..++|.|+||+||||+++.+++.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998753
No 231
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.76 E-value=0.00065 Score=60.20 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
.+.|.||+|+||||+++.++. +|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 478999999999999999988 777665
No 232
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.76 E-value=0.036 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=19.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+.+++.+|+|+|||..+-..+-.
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHH
Confidence 357999999999999877655544
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.76 E-value=0.0009 Score=58.27 Aligned_cols=37 Identities=32% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccch
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 234 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~ 234 (418)
++..++|.|+||+||||+++.++..+ +.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 34458899999999999999999987 44455565443
No 234
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.76 E-value=0.003 Score=61.25 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||+++++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455568899999999999999999854
No 235
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.75 E-value=0.00082 Score=61.79 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCc--------EEEEccchhhh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNAT--------FLKLAGPQLVQ 237 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~--------~~~i~~s~l~~ 237 (418)
+..|.|.|++|+||||+|+.++..++.+ ++.+++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3458899999999999999999998876 34667666654
No 236
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.74 E-value=0.00047 Score=66.10 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
..++|.||+|||||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3589999999999999999999998887776643
No 237
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.0028 Score=55.85 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=40.1
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc---h-----hhhhhhcch-----HHHHHHHHHHHHhCCCeEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP---Q-----LVQMFIGDG-----AKLVRDAFQLAKEKSPCIIFI 264 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s---~-----l~~~~~g~~-----~~~~~~~~~~a~~~~~~vl~i 264 (418)
-.+++||+|+|||+.+-.++..+ +..++.+... . +.+. .|.. ......+++.+.. .+.+|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 47889999999999988888765 5555555311 0 1111 1100 0001234444432 3579999
Q ss_pred cCCCcc
Q 039866 265 DEIDAI 270 (418)
Q Consensus 265 DEid~l 270 (418)
||+..+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999987
No 238
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.73 E-value=0.0056 Score=56.47 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999999854
No 239
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.72 E-value=0.0026 Score=64.68 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=30.6
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~ 232 (418)
|+.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56666669999999999999999998865 456777664
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.00075 Score=58.65 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998763
No 241
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.72 E-value=0.0045 Score=67.15 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
++..++|+||.|+||||+.|.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 344589999999999999999875
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.71 E-value=0.00035 Score=62.18 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
.+..++|.|+||+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355689999999999999999999864
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.71 E-value=0.0012 Score=58.04 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=23.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
+.++|.||+|+|||+|++.+.......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 458999999999999999998876433
No 244
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.70 E-value=0.0024 Score=62.32 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+...+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 445568899999999999999999854
No 245
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.70 E-value=0.0097 Score=52.21 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCCceeecCCCCcHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~laka 218 (418)
.+++++.+|+|+|||..+-.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 35799999999999987433
No 246
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.69 E-value=0.00067 Score=59.67 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=27.8
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
+..+.|.|++|+|||++++.++.. +.+++ +...+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 345889999999999999999998 76655 4444443
No 247
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.67 E-value=0.001 Score=61.24 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
+..+.|.||+|+||||+++.+++.++..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 345889999999999999999999987654
No 248
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.67 E-value=0.0049 Score=62.95 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCCCCCceeecCCCCcHHHHHHHH--HHHh--CCcEEEEccchhhh------hhhcc-----------------------
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARAC--AAQT--NATFLKLAGPQLVQ------MFIGD----------------------- 242 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakal--a~~l--~~~~~~i~~s~l~~------~~~g~----------------------- 242 (418)
++++..++|.||+|+|||+|++.+ +... +...++++..+... ..+|.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 356667999999999999999994 4432 34455555432100 00000
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q 039866 243 -------GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 315 (418)
Q Consensus 243 -------~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~vivI~ttn~~~ 315 (418)
................|.+|+|||+-.+.+. ..-++.....+..++..+.. .++.+|++|+..+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~ 186 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIE 186 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCC
Confidence 0112233344455567889999999776432 11144556667777766532 1234566666554
Q ss_pred C
Q 039866 316 I 316 (418)
Q Consensus 316 ~ 316 (418)
.
T Consensus 187 ~ 187 (525)
T 1tf7_A 187 E 187 (525)
T ss_dssp S
T ss_pred C
Confidence 4
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.67 E-value=0.00072 Score=59.68 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 455568999999999999999999876
No 250
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.66 E-value=0.00081 Score=63.65 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=28.8
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
+.-++|.||+|+|||+||..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3458899999999999999999999877776654
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.61 E-value=0.00085 Score=59.79 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445588999999999999999999864
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.61 E-value=0.0028 Score=56.04 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=28.0
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
++..+.|.||+|+||||+++.++..+ +.+++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34458899999999999999999876 5566655443
No 253
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.61 E-value=0.0013 Score=58.87 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=26.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
..+.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999998776543
No 254
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.60 E-value=0.00064 Score=60.33 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=24.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh-CCcEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT-NATFLK 229 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l-~~~~~~ 229 (418)
+..+.|.||+|+||||+++.++..+ +..++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3347899999999999999999977 444433
No 255
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.59 E-value=0.00096 Score=59.69 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=25.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
..+.|.|++|+||||+++.++. ++.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3588999999999999999998 77665543
No 256
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.59 E-value=0.0031 Score=62.77 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
++..++|.|++|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999876 4566666654
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.58 E-value=0.0034 Score=59.50 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=27.0
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
-++|.||+|+|||+++..+|..++..++..+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 47899999999999999999998776665543
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.57 E-value=0.0011 Score=58.55 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=22.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++..+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999998763
No 259
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.56 E-value=0.012 Score=59.14 Aligned_cols=74 Identities=30% Similarity=0.428 Sum_probs=44.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhh--------h----c-chHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF--------I----G-DGAKLVRDAFQL 253 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~--------~----g-~~~~~~~~~~~~ 253 (418)
.++..++|.||+|+||||+++.|+..+ +..+....+..+. ..+ + + .....+...+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 344458899999999999999999876 3444443332211 011 1 0 112223334444
Q ss_pred HHhCCCeEEEEcCCCcc
Q 039866 254 AKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 254 a~~~~~~vl~iDEid~l 270 (418)
+......+++||-+..+
T Consensus 371 a~~~~~DvVLIDTaGrl 387 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRL 387 (503)
T ss_dssp HHHTTCSEEEECCCCSC
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 44455679999888765
No 260
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0011 Score=59.18 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC----CcEEEEccchh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQL 235 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~----~~~~~i~~s~l 235 (418)
.++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3455688999999999999999999764 55777775433
No 261
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.0078 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.0
Q ss_pred CCCceeecCCCCcHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala 220 (418)
+..+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999998776654
No 262
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.53 E-value=0.0015 Score=59.32 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.3
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
++..+.|.|++|+|||++++.++..++.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44558899999999999999999999876653
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.50 E-value=0.0013 Score=63.28 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.++|.||+|+|||++|+.+|..++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 5889999999999999999999986665544
No 264
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.49 E-value=0.0054 Score=58.11 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+++...+.|.||+|+|||||++.++...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3566679999999999999999998854
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.49 E-value=0.0013 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445588999999999999999998853
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.49 E-value=0.0018 Score=65.85 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccch-hhh---hh--------hcchHHHHHHHHHHHHhCCCeEEE
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQ-LVQ---MF--------IGDGAKLVRDAFQLAKEKSPCIIF 263 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s~-l~~---~~--------~g~~~~~~~~~~~~a~~~~~~vl~ 263 (418)
.+.+++|.||+|+||||++++++..+. ...+.+.... +.. .+ ++........+...+.+..|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 455799999999999999999998773 3455554332 210 00 011111223344455567889999
Q ss_pred EcCCC
Q 039866 264 IDEID 268 (418)
Q Consensus 264 iDEid 268 (418)
+.|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99984
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.48 E-value=0.0017 Score=56.61 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
.++|.||+|+||||+++.++...+. .+.++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d 35 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGD 35 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEccc
Confidence 3789999999999999999986543 2344443
No 268
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.42 E-value=0.0019 Score=56.83 Aligned_cols=68 Identities=25% Similarity=0.210 Sum_probs=40.5
Q ss_pred CceeecCCCCcHH-HHHHHHHHHh--CCcEEEEccc---hhhhhhh---cc-----hHHHHHHHHHHHHhCCCeEEEEcC
Q 039866 201 GVLLYGPPGTGKT-LMARACAAQT--NATFLKLAGP---QLVQMFI---GD-----GAKLVRDAFQLAKEKSPCIIFIDE 266 (418)
Q Consensus 201 ~vLl~Gp~GtGKT-~lakala~~l--~~~~~~i~~s---~l~~~~~---g~-----~~~~~~~~~~~a~~~~~~vl~iDE 266 (418)
-.++|||.|+||| .|.+++.+.. +..++.+... .+....+ |. .......++...+ ...+|+|||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 3789999999999 8999988754 5667776533 1111100 10 0000112233222 346999999
Q ss_pred CCcc
Q 039866 267 IDAI 270 (418)
Q Consensus 267 id~l 270 (418)
+.-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9987
No 269
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.42 E-value=0.0012 Score=61.75 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 235 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l 235 (418)
.|.|.|++|+||||+|+.++ .++.+++ ++..+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 48899999999999999999 5776654 44444
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.41 E-value=0.0016 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.0
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 271
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.39 E-value=0.029 Score=49.85 Aligned_cols=18 Identities=39% Similarity=0.342 Sum_probs=15.6
Q ss_pred CCCceeecCCCCcHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMA 216 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~la 216 (418)
.+++++.+|+|+|||..+
T Consensus 51 ~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 457999999999999873
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.37 E-value=0.0019 Score=58.07 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||+|+|||||++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3456678999999999999999999976
No 273
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.33 E-value=0.0013 Score=58.16 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=26.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
+.+++|.||||+|||++|..++.... .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 34699999999999999999998865 5554443
No 274
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.33 E-value=0.0015 Score=64.09 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.-++|.||+|+|||+++..+|..++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 34789999999999999999999987766554
No 275
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.32 E-value=0.0011 Score=62.42 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHh-CCcEEEEccchh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQL 235 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l-~~~~~~i~~s~l 235 (418)
.++|.|+||+||||+++.++..+ +.. .++...+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~ 37 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDY 37 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHH
Confidence 48999999999999999999964 544 4444333
No 276
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.31 E-value=0.0059 Score=58.28 Aligned_cols=36 Identities=28% Similarity=0.180 Sum_probs=28.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
.++..++|.||+|+||||++..+|..+ +..++.+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455568999999999999999999876 566666655
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.31 E-value=0.0014 Score=58.37 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++..+.|.||+|+|||||++.++..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444588999999999999999999874
No 278
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.30 E-value=0.015 Score=52.40 Aligned_cols=19 Identities=42% Similarity=0.382 Sum_probs=16.0
Q ss_pred CCCceeecCCCCcHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lak 217 (418)
.+++++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4679999999999998643
No 279
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.033 Score=54.72 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEEE
Q 039866 22 DDIIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQLPYLVGNIVE 78 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
+.++++.+++++++..++.++.++++++.+++.+-+++-..+.+++.-=.++.++..
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP 69 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRP 69 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 334555566666666666666666666666666666666666666543333333333
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.27 E-value=0.0015 Score=58.00 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++..+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344588999999999999999999876
No 281
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.26 E-value=0.014 Score=63.49 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.2
Q ss_pred CCceeecCCCCcHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~ 221 (418)
..++|+||.|+||||+.|.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999954
No 282
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=96.25 E-value=0.023 Score=55.94 Aligned_cols=45 Identities=13% Similarity=0.004 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039866 24 IIRASRLLDNEIRVLKEELQRTNLELDSYKEKVKENQEKIKLNKQ 68 (418)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (418)
++++.+++++++..++.++..+++++.++..+-+++...+.+++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555555566666666666666655555555555555555554
No 283
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.25 E-value=0.003 Score=59.29 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLA 231 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~ 231 (418)
|+.++.-++|.||||+|||++++.++..+ +.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 55677779999999999999999998865 33565554
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.24 E-value=0.003 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++.+.|.||+|+|||+|++.++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999998764
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.21 E-value=0.0022 Score=54.70 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||.|+|||||++.++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455568899999999999999999986
No 286
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.20 E-value=0.0014 Score=65.07 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.2
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
+.-++|+|+||+||||+|+.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 445889999999999999999998875543
No 287
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.20 E-value=0.0028 Score=56.23 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=26.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFL 228 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~ 228 (418)
.|.|.||+|||||++++.+|+.++.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4889999999999999999999999987
No 288
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.18 E-value=0.0044 Score=65.00 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=21.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~ 231 (418)
-.||.||||||||+++-.+...+ +..++.+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 47999999999998766554433 44444444
No 289
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.17 E-value=0.011 Score=52.69 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=23.5
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLA 231 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~ 231 (418)
.+++||.|+|||+.+-.++... +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888887755 56666654
No 290
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.15 E-value=0.0066 Score=58.14 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999999876
No 291
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.14 E-value=0.0092 Score=59.05 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=40.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEccc-hhhh-----hhhcc-hHHHHHHHHHHHHhCCCeEEEEcCCC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGP-QLVQ-----MFIGD-GAKLVRDAFQLAKEKSPCIIFIDEID 268 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s-~l~~-----~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid 268 (418)
...++|.||+|+||||++++++..+. ..++.+.-+ ++.. ..++. ..-.....+..+-...|.++++.|+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 33589999999999999999999873 334443321 1110 00010 00011223334444578899998863
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.13 E-value=0.0026 Score=60.21 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHhCCcE
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATF 227 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l~~~~ 227 (418)
.++++..+.|+||+|+|||||++.|+..+...+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456777799999999999999999999874443
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.13 E-value=0.037 Score=52.01 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=45.4
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhh--------h----c-chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF--------I----G-DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~--------~----g-~~~~~~~~~~~~a 254 (418)
++..+.+.|++|+|||+++..+|..+ +..+..+++.-.. ..+ + + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34457888999999999999999865 5566666542110 000 0 0 1112234455666
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
....+.+|+||+.-.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5456789999997554
No 294
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.12 E-value=0.029 Score=49.07 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=16.0
Q ss_pred CCCceeecCCCCcHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lak 217 (418)
.+++++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3579999999999997554
No 295
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.11 E-value=0.0094 Score=60.76 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 236 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~ 236 (418)
..++|.|.||+|||++|+.+++.+ +.....++..++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 358899999999999999999988 4445556655443
No 296
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.10 E-value=0.0027 Score=56.39 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
.++..+.|.||+|+||||++++++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4555688999999999999999999874
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.09 E-value=0.0028 Score=57.11 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
+++..+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4555688999999999999999998764
No 298
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.07 E-value=0.015 Score=57.91 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=48.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh----CCcEEEEccchhhhh-------h---------h-c---chHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM-------F---------I-G---DGAKLVRDAFQL 253 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~s~l~~~-------~---------~-g---~~~~~~~~~~~~ 253 (418)
+++.+++.|++|+||||++-.+|..+ +..+..+++.-+... + . + .........+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999765 667777776532110 0 0 0 112223455666
Q ss_pred HHhCCCeEEEEcCCCcc
Q 039866 254 AKEKSPCIIFIDEIDAI 270 (418)
Q Consensus 254 a~~~~~~vl~iDEid~l 270 (418)
+....+.+++||=...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 66556789999986544
No 299
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.029 Score=59.32 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=19.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala 220 (418)
....++++.||+|+|||+.+-...
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHHHH
Confidence 456789999999999999985443
No 300
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.03 E-value=0.015 Score=51.94 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.4
Q ss_pred CCCceeecCCCCcHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~laka 218 (418)
.+++++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 45799999999999986543
No 301
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.03 E-value=0.021 Score=59.30 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=24.2
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+||||+++.++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4566679999999999999999999854
No 302
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.94 E-value=0.0031 Score=57.55 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
.++.-+-|.||+|+||||+++.++..++..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344458899999999999999999987643
No 303
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.94 E-value=0.0095 Score=56.18 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=46.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh-------hh---------hc----chHHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ-------MF---------IG----DGAKLVRDAFQLAK 255 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~-------~~---------~g----~~~~~~~~~~~~a~ 255 (418)
+..+++.|++|+|||+++..+|..+ +..+..+++.-... .+ .+ ............++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4458889999999999999999876 56666666532110 00 01 12222345566666
Q ss_pred hCCCeEEEEcCCCcc
Q 039866 256 EKSPCIIFIDEIDAI 270 (418)
Q Consensus 256 ~~~~~vl~iDEid~l 270 (418)
...+.+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 566789999986554
No 304
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.93 E-value=0.0035 Score=54.56 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=28.1
Q ss_pred ceeecCCCCcHHHHHHHHHHHhCCcEEEEccch
Q 039866 202 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 234 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~ 234 (418)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77888887654
No 305
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.93 E-value=0.011 Score=52.63 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.0
Q ss_pred CCceeecCCCCcHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~laka 218 (418)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
No 306
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.92 E-value=0.0046 Score=56.01 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=27.9
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccchhhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 237 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s~l~~ 237 (418)
.+-|.||||+||||+|+.++..++.+++ +..+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 3678999999999999999999987765 4444443
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0042 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999999876
No 308
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.89 E-value=0.021 Score=56.50 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=45.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhh-------hhh---h-------c---chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF---I-------G---DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~-------~~~---~-------g---~~~~~~~~~~~~a 254 (418)
++..+++.||+|+||||++..+|..+ +..+..+++.-.. ..+ . + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45568889999999999999999876 5566666653111 000 0 1 1122224556666
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
+...+.+++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5566779999876544
No 309
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.87 E-value=0.013 Score=60.58 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+||||+++.++...
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3566678999999999999999998864
No 310
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.87 E-value=0.042 Score=56.75 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+||||+++.++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566679999999999999999999854
No 311
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.84 E-value=0.015 Score=65.96 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+||||+++.+.+..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566679999999999999999999865
No 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.83 E-value=0.01 Score=60.19 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=44.8
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchhhh-------h--------hhc-----chHHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ-------M--------FIG-----DGAKLVRDAFQLA 254 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l~~-------~--------~~g-----~~~~~~~~~~~~a 254 (418)
++..++|.|+||+||||++..+|..+ +..+..+++..+.. . +.+ +........+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999766 56666666521100 0 000 1112223445555
Q ss_pred HhCCCeEEEEcCCCcc
Q 039866 255 KEKSPCIIFIDEIDAI 270 (418)
Q Consensus 255 ~~~~~~vl~iDEid~l 270 (418)
....+.+++||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5456679999987655
No 313
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.82 E-value=0.028 Score=53.55 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.7
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999987655544
No 314
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0072 Score=58.54 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 455568999999999999999999876
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.81 E-value=0.002 Score=57.13 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.3
Q ss_pred ceeecCCCCcHHHHHHHHHHHhC
Q 039866 202 VLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l~ 224 (418)
+.|.||+|+||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 316
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.81 E-value=0.0021 Score=58.00 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=17.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHH-HHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACA-AQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala-~~l 223 (418)
.++.-+.|.||+|+||||+++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345558899999999999999999 765
No 317
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.78 E-value=0.038 Score=59.18 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..++|+||.|+||||+.|.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999864
No 318
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.74 E-value=0.0054 Score=63.66 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
+..++|.|+||+||||+|+++++.+ +.+++.++..
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 3458999999999999999999998 8899888754
No 319
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.73 E-value=0.031 Score=55.47 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCceeecCCCCcHHHHH-HHHH
Q 039866 200 KGVLLYGPPGTGKTLMA-RACA 220 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~la-kala 220 (418)
+.+|+.||+|+|||..+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999986 4444
No 320
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.73 E-value=0.037 Score=50.40 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.2
Q ss_pred CCCceeecCCCCcHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lak 217 (418)
.+.+++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4679999999999998654
No 321
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.71 E-value=0.0034 Score=59.02 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=25.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC---CcEEEEccchhh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLV 236 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~s~l~ 236 (418)
-+.|.||+|+||||+|+.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 488999999999999999999765 445566665554
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.70 E-value=0.005 Score=55.74 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC--CcEEEE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN--ATFLKL 230 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i 230 (418)
+.-+.|.||||+||||+++.++..++ ..++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 33488999999999999999999986 455443
No 323
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.68 E-value=0.029 Score=58.04 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+||||+++.++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3566679999999999999999998854
No 324
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.67 E-value=0.011 Score=55.56 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
++.-+.|.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344588999999999999999999874
No 325
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.63 E-value=0.0066 Score=54.78 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLK 229 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~ 229 (418)
.+.|.|++|||||++++.+|..++.+|+-
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47899999999999999999999998754
No 326
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.021 Score=58.47 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred ceeecCCCCcHHHHHHHHHHHh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l 223 (418)
+-|.||+|+|||||++.++..+
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998753
No 327
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.59 E-value=0.033 Score=58.98 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=17.3
Q ss_pred CCCCceeecCCCCcHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lak 217 (418)
...++++.||+|+|||+.+-
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35679999999999999884
No 328
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.027 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++..+-|.||+|+|||||.+.++..+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44458899999999999999999754
No 329
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.54 E-value=0.032 Score=54.15 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.1
Q ss_pred CCceeecCCCCcHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala 220 (418)
+++++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 569999999999998665444
No 330
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.52 E-value=0.0091 Score=57.32 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=31.1
Q ss_pred CCCCCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 195 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 195 g~~~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
|+.++.-++|.|+||+|||++|..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56777779999999999999999998864 667666654
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.52 E-value=0.016 Score=55.24 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
.-+.|.||+|+||||+++.++..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478999999999999999999874
No 332
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.46 E-value=0.0075 Score=52.21 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.8
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
...+.|.||+|+|||++++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999998875
No 333
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.43 E-value=0.031 Score=52.65 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 232 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~ 232 (418)
+++++.+|+|+|||..+-..+-..+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 579999999999999877666665655555544
No 334
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.41 E-value=0.032 Score=63.20 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.3
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++|+..+-|+||+|+||||+++.+.+..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4566779999999999999999998854
No 335
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.41 E-value=0.0067 Score=57.67 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 344458899999999999999999976
No 336
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.38 E-value=0.18 Score=50.95 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh--------CCcEEEEcc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT--------NATFLKLAG 232 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l--------~~~~~~i~~ 232 (418)
+++++.+|+|+|||..+-..+-.. +..++.+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 479999999999998876665443 445555544
No 337
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.34 E-value=0.08 Score=51.50 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCCceeecCCCCcHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMA 216 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~la 216 (418)
.+.+++.+|+|+|||..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 467999999999999743
No 338
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.34 E-value=0.0054 Score=55.77 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455668999999999999999999754
No 339
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.34 E-value=0.0078 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34558899999999999999999876
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.32 E-value=0.033 Score=53.79 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLA 231 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~ 231 (418)
...+.|.|+||+|||+++..++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3458999999999999999998875 44444443
No 341
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.32 E-value=0.26 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=18.3
Q ss_pred CCCceeecCCCCcHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~ 221 (418)
.+++++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999987654444
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.30 E-value=0.012 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
+..+.|.||+|+||||+++.++..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34488999999999999999999765
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.28 E-value=0.015 Score=50.04 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=24.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~ 231 (418)
.+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 58899999999999999999876 34444443
No 344
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.25 E-value=0.049 Score=50.02 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCceeecCCCCcHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~laka 218 (418)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999987543
No 345
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.23 E-value=0.0062 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456668999999999999999999864
No 346
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.20 E-value=0.033 Score=55.89 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.4
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC---CcEEEEcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG 232 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~---~~~~~i~~ 232 (418)
+..++|.|.||+|||++++.+++.++ .+...++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 34589999999999999999999874 34444443
No 347
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.20 E-value=0.0067 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..++||.|+||+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457999999999999999999885
No 348
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.19 E-value=0.047 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.3
Q ss_pred CCCCceeecCCCCcHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala 220 (418)
.++++++.+|+|+|||..+-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34789999999999998765443
No 349
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.17 E-value=0.064 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.4
Q ss_pred CCCceeecCCCCcHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARA 218 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~laka 218 (418)
.+++++.+|+|+|||..+-.
T Consensus 66 g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHHH
Confidence 35799999999999987543
No 350
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.17 E-value=0.0053 Score=55.42 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999999854
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.15 E-value=0.007 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455668899999999999999998864
No 352
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.14 E-value=0.049 Score=57.97 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..++|+||+|+||||+.|.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 34789999999999999999864
No 353
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.10 E-value=0.0091 Score=61.58 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhC----CcEEEEccchh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQL 235 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~----~~~~~i~~s~l 235 (418)
..++|.|+||+||||+|+++++.++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3488999999999999999999885 77888875443
No 354
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.08 E-value=0.019 Score=56.99 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=18.9
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
-.++.|+||||||++...++..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 4789999999999999888753
No 355
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.08 E-value=0.04 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||||+|||||.++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344458899999999999999999765
No 356
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.06 E-value=0.13 Score=46.39 Aligned_cols=66 Identities=23% Similarity=0.147 Sum_probs=35.3
Q ss_pred ceeecCCCCcHHHHHHHHHHHh---CCcEEEEccc-------hhhhhhhcch-----HHHHHHHHHHHHhCCCeEEEEcC
Q 039866 202 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGP-------QLVQMFIGDG-----AKLVRDAFQLAKEKSPCIIFIDE 266 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s-------~l~~~~~g~~-----~~~~~~~~~~a~~~~~~vl~iDE 266 (418)
.+++||.|+|||+.+-..+... +..++.+... .+.++. |.. -.....+++.+ ..+.+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 7789999999997666655543 4455544421 011110 000 00001233344 3467999999
Q ss_pred CCcc
Q 039866 267 IDAI 270 (418)
Q Consensus 267 id~l 270 (418)
+..+
T Consensus 99 aQF~ 102 (234)
T 2orv_A 99 GQFF 102 (234)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9987
No 357
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.04 E-value=0.00025 Score=71.34 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred CCCCeEEEEEeCCCCCCChhhhCCCCcee--EEEcCCC--CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHcCCCcHHHHH
Q 039866 301 SDDRIKVIAATNRADILDPALMRSGRLDR--KIELPHP--SEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLK 376 (418)
Q Consensus 301 ~~~~vivI~ttn~~~~l~~~l~r~~Rf~~--~i~~~~p--~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 376 (418)
....++|++|||.++.++++++|+|||+. .+.+|.| +.++|.+|++.+.. .++..++..+.| |+|+.
T Consensus 187 ~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~ 257 (456)
T 2c9o_A 187 AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDIL 257 (456)
T ss_dssp TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC------------
T ss_pred CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHH
Confidence 33345556899999999999999999998 4556666 44677777654442 257788888888 89999
Q ss_pred HHHHH
Q 039866 377 AVCVE 381 (418)
Q Consensus 377 ~l~~~ 381 (418)
++|..
T Consensus 258 ~l~~~ 262 (456)
T 2c9o_A 258 SMMGQ 262 (456)
T ss_dssp -----
T ss_pred HHHhh
Confidence 99854
No 358
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.04 E-value=0.088 Score=51.27 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..++|.||+|+|||++++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345569999999999999999998864
No 359
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.03 E-value=0.0077 Score=55.71 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||+++++...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999999864
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.03 E-value=0.011 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
-.+|+||+|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998764
No 361
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.01 E-value=0.0089 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+ ..+.|.||+|+|||||++.++...
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 678899999999999999999864
No 362
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.95 E-value=0.01 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++..+.|.||+|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45556889999999999999999985
No 363
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.051 Score=60.39 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
..++|+.||+|+|||..+-..+... +...+.+..
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 4579999999999999876554433 444454443
No 364
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.93 E-value=0.047 Score=60.03 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred CCceeecCCCCcHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala 220 (418)
..++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 458899999999999999994
No 365
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.92 E-value=0.0085 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456668999999999999999998754
No 366
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.90 E-value=0.04 Score=50.06 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.4
Q ss_pred CCceeecCCCCcHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lak 217 (418)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998644
No 367
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.89 E-value=0.0075 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568999999999999999999853
No 368
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.89 E-value=0.037 Score=60.22 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.8
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
.++..+.|.||+|+|||||++.++.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555689999999999999999984
No 369
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.88 E-value=0.0079 Score=61.70 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhC----CcEEEEccchhh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQLV 236 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~----~~~~~i~~s~l~ 236 (418)
++..+.|.|++|+||||++++++..++ ..+..++...+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 444588999999999999999999884 345567766553
No 370
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.88 E-value=0.009 Score=55.31 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 455568899999999999999999864
No 371
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.86 E-value=0.02 Score=59.66 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999888776643
No 372
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.85 E-value=0.009 Score=55.54 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455668899999999999999998854
No 373
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.85 E-value=0.11 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.5
Q ss_pred CCCceeecCCCCcHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACA 220 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala 220 (418)
.+++++.+|+|+|||..+-..+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHH
Confidence 3579999999999997665443
No 374
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.83 E-value=0.0094 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++..+.|.||+|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45556889999999999999999985
No 375
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.82 E-value=0.0079 Score=55.47 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999998854
No 376
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.81 E-value=0.008 Score=55.09 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999998854
No 377
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.79 E-value=0.0083 Score=54.29 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999999864
No 378
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.77 E-value=0.042 Score=54.86 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=27.8
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 233 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~~s 233 (418)
.+++.||+|+|||.++-.++...+.+++.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888887777666554
No 379
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.76 E-value=0.014 Score=52.87 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=22.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHhC
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
-+.|.|++|+||||+++.+++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999984
No 380
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.76 E-value=0.0099 Score=55.09 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999998854
No 381
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.028 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+...+++.|++|+|||+++.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34469999999999999999998753
No 382
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.74 E-value=0.0085 Score=54.62 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999854
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.73 E-value=0.0093 Score=57.87 Aligned_cols=73 Identities=14% Similarity=0.258 Sum_probs=44.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhC--CcEEEEccc-hhh----hh---hhc-c-------hHHHHHHHHHHHHhCC
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGP-QLV----QM---FIG-D-------GAKLVRDAFQLAKEKS 258 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~--~~~~~i~~s-~l~----~~---~~g-~-------~~~~~~~~~~~a~~~~ 258 (418)
.+...++|.||+|+||||++++++.... ...+.++.. ++. .. ++. . ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 4566899999999999999999998763 334444421 111 00 111 0 1111344555565667
Q ss_pred CeEEEEcCCCc
Q 039866 259 PCIIFIDEIDA 269 (418)
Q Consensus 259 ~~vl~iDEid~ 269 (418)
|.+++++|+..
T Consensus 253 pd~~l~~e~r~ 263 (361)
T 2gza_A 253 PTRILLAELRG 263 (361)
T ss_dssp CSEEEESCCCS
T ss_pred CCEEEEcCchH
Confidence 88999999753
No 384
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.73 E-value=0.023 Score=50.72 Aligned_cols=30 Identities=27% Similarity=0.218 Sum_probs=24.4
Q ss_pred CceeecCCCCcHHHHHHHHHHHh---CCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT---NATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l---~~~~~~i 230 (418)
-+.|.||+|+||||+++.++..+ +.+++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 47889999999999999999987 3455444
No 385
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.72 E-value=0.011 Score=57.18 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+...+.|.||+|+|||||.++++...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 445568899999999999999999854
No 386
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.71 E-value=0.011 Score=52.72 Aligned_cols=24 Identities=46% Similarity=0.541 Sum_probs=21.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+..+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999875
No 387
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.71 E-value=0.28 Score=49.57 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=23.9
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh--------CCcEEEEcc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT--------NATFLKLAG 232 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l--------~~~~~~i~~ 232 (418)
+++++.+|+|+|||..+-..+... +..++.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 469999999999998876665443 445555544
No 388
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.70 E-value=0.068 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+++++.+|+|+|||.++-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 468999999999999988777654
No 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.70 E-value=0.009 Score=54.83 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999998865
No 390
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.67 E-value=0.018 Score=51.34 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=25.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEEc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 231 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i~ 231 (418)
.+-|+|..|||||++++.++. +|.+++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 488999999999999999998 888766443
No 391
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.64 E-value=0.17 Score=45.13 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=20.4
Q ss_pred ceeecCCCCcHHH-HHHHHHHHh--CCcEEEEc
Q 039866 202 VLLYGPPGTGKTL-MARACAAQT--NATFLKLA 231 (418)
Q Consensus 202 vLl~Gp~GtGKT~-lakala~~l--~~~~~~i~ 231 (418)
.+++||.|+|||+ +.+.+.+.. +..++.+.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 6789999999999 556654433 45554443
No 392
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.62 E-value=0.027 Score=50.43 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=24.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCcE
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNATF 227 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~~ 227 (418)
+.-+.|.|++|+||||+++.+++.++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 34588899999999999999999997643
No 393
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.59 E-value=0.11 Score=48.67 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.4
Q ss_pred CCCCceeecCCCCcHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMA 216 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~la 216 (418)
+++++++.+|+|||||...
T Consensus 130 ~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 130 PPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp SCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 4578999999999999764
No 394
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.59 E-value=0.034 Score=58.69 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=22.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHH-HHh--CCcEEEEc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACA-AQT--NATFLKLA 231 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala-~~l--~~~~~~i~ 231 (418)
...++++.||+|+|||+.+-... +.+ +...+.+.
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 35689999999999999885433 222 44444444
No 395
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.014 Score=56.64 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+...+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 445558899999999999999999854
No 396
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.57 E-value=0.038 Score=49.90 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=15.9
Q ss_pred CCCceeecCCCCcHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lak 217 (418)
.+++++.+|+|+|||..+-
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3579999999999998643
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.56 E-value=0.0065 Score=56.00 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhC
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTN 224 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~ 224 (418)
+.-|.|.|++|+||||+++.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34588999999999999999999983
No 398
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.56 E-value=0.01 Score=54.65 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999999864
No 399
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.55 E-value=0.014 Score=56.55 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 445568899999999999999999854
No 400
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.54 E-value=0.01 Score=55.42 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||++.++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999999854
No 401
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.51 E-value=0.014 Score=56.69 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+...+.|.||+|+|||||.+.++...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455568899999999999999999854
No 402
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.50 E-value=0.05 Score=54.36 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+..++|+||+|+|||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3458999999999999999887754
No 403
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.50 E-value=0.11 Score=58.58 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
++++..+.|.||+|+||||+++.++...
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566679999999999999999998865
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.50 E-value=0.064 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+..+.|.|+||+|||++++.++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999998764
No 405
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.48 E-value=0.13 Score=49.45 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCceeecCCCCcHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lak 217 (418)
+++++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998743
No 406
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.48 E-value=0.082 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.9
Q ss_pred CCCceeecCCCCcHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARAC 219 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakal 219 (418)
.+.+++.+|+|+|||..+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 456999999999999875443
No 407
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.46 E-value=0.018 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999885
No 408
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.46 E-value=0.034 Score=54.35 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45579999999999999999998764 556666654
No 409
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.45 E-value=0.013 Score=56.72 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+...+.|.||+|+|||||.+.++...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568899999999999999999854
No 410
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.45 E-value=0.012 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.0
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||.+.++...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455568899999999999999999854
No 411
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.42 E-value=0.024 Score=57.43 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=23.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNA 225 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~ 225 (418)
..++|.|++|+||||+++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999974
No 412
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.41 E-value=0.018 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 413
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.41 E-value=0.12 Score=50.75 Aligned_cols=32 Identities=38% Similarity=0.432 Sum_probs=25.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 232 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l----~~~~~~i~~ 232 (418)
++++.+|+|+|||..+-.++... +..++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999998886654 555655554
No 414
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.011 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+.|.||+|+||||+++.++..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 415
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.39 E-value=0.02 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
...++|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998854
No 416
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.36 E-value=0.021 Score=55.39 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
...+.|.||+|+|||||++.++......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999987544
No 417
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.29 E-value=0.082 Score=54.11 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=29.0
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh---CCcEEEEccchh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 235 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~s~l 235 (418)
..++|+|++|+||||+|+.++..+ +.++..++...+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 458899999999999999999976 456777776544
No 418
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.26 E-value=0.015 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+...+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 345568899999999999999999854
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.26 E-value=0.019 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=18.5
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.-+.|.||+|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347888999999999999999987
No 420
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.23 E-value=0.034 Score=59.64 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.2
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999888776643
No 421
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.21 E-value=0.023 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 422
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.21 E-value=0.019 Score=53.28 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
.+.|.||+|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 423
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.13 E-value=0.015 Score=54.55 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||+|+|||||++.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455568899999999999999999864
No 424
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.12 E-value=0.2 Score=49.46 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.9
Q ss_pred CCCCceeecCCCCcHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMA 216 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~la 216 (418)
..+.+++.+|+|+|||...
T Consensus 92 ~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 92 SGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEECCCCCCchHHH
Confidence 3467999999999999843
No 425
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.09 E-value=0.23 Score=53.04 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 232 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l---~~~~~~i~~ 232 (418)
.+.++|+.||+|+|||..+-..+-.. +...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34689999999999999886654433 555555554
No 426
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.06 E-value=0.025 Score=47.22 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.06 E-value=0.013 Score=56.72 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=22.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
.++..+.|.||+|+|||||.+.++...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999999854
No 428
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.026 Score=56.53 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.++..+.|.||+|+|||||+|.++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3566679999999999999999999864
No 429
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.05 E-value=0.29 Score=49.88 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCCceeecCCCCcHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lak 217 (418)
.+.+++.+|+|+|||..+-
T Consensus 111 ~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 4579999999999998533
No 430
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.04 E-value=0.019 Score=56.23 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+...+.|.||+|+|||||.++++..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45566899999999999999999974
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.99 E-value=0.026 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+.-+.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999999977
No 432
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.94 E-value=0.026 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.5
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~ 221 (418)
.+.|.|++|+|||+|.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999986
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.93 E-value=0.027 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-.+|+||.|+|||++..|++-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998655
No 434
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.93 E-value=0.028 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.0
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 435
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.92 E-value=0.018 Score=53.20 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=21.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+..+.|.||+|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999764
No 436
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.89 E-value=0.022 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.4
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~ 221 (418)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 437
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.84 E-value=0.027 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.1
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 438
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.80 E-value=0.12 Score=51.65 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=16.7
Q ss_pred CCCCceeecCCCCcHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lak 217 (418)
+++.+++.||+|+|||..+-
T Consensus 130 ~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp SCCEEEEECCSSSSHHHHHH
T ss_pred CCCcEEEEcCCCCchhHHHH
Confidence 35679999999999998743
No 439
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.76 E-value=0.031 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.0
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 440
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.76 E-value=0.031 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..+++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 441
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.73 E-value=0.032 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.3
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 442
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.71 E-value=0.029 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
...+++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999763
No 443
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.69 E-value=0.031 Score=47.08 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=19.8
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++|.|++|+|||+|++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999753
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.69 E-value=0.046 Score=54.35 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCC
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNA 225 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~ 225 (418)
+...+.|.||+|+|||+|++.++.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4445889999999999999999998753
No 445
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.68 E-value=0.026 Score=49.16 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
...++|.|++|+|||+|++++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 345999999999999999999764
No 446
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.67 E-value=0.033 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 447
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.66 E-value=0.4 Score=49.18 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCCceeecCCCCcHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMAR 217 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lak 217 (418)
.+.+++.+|+|+|||..+-
T Consensus 60 ~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHH
Confidence 4569999999999998533
No 448
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.66 E-value=0.034 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 449
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.63 E-value=0.027 Score=50.72 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.3
Q ss_pred CceeecCCCCcHHHHHHHHHHHhCCcEEEE
Q 039866 201 GVLLYGPPGTGKTLMARACAAQTNATFLKL 230 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l~~~~~~i 230 (418)
-+.|.||.|+||||+++.++.. +..+...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4789999999999999999987 4444443
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.61 E-value=0.032 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCceeecCCCCcHHHHHHHHHHHhCC
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQTNA 225 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l~~ 225 (418)
.-+.|.|++|+|||++++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34778899999999999999997644
No 451
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.61 E-value=0.27 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.3
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+++++.+|+|+|||..+-..+..
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999987766653
No 452
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.60 E-value=0.036 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.9
Q ss_pred CCCCceeecCCCCcHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
.+..+++.|++|+|||+|++++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344699999999999999999976
No 453
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=93.60 E-value=0.61 Score=49.87 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh--------CCcEEEEcc
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT--------NATFLKLAG 232 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l--------~~~~~~i~~ 232 (418)
+++++.+|+|+|||..+-..+... +..++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999999877666543 455555544
No 454
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.60 E-value=0.035 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..+++.|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999874
No 455
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.59 E-value=0.04 Score=53.06 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCCCceeecCCCCcHHHHHHHHHHHhCCc
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAAQTNAT 226 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~~l~~~ 226 (418)
++..+.|.||+|+|||+|++.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44468999999999999999999987543
No 456
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.58 E-value=0.1 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..|+|.|+||+|||+|+.++...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999999763
No 457
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.58 E-value=0.032 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 458
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.052 Score=58.25 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=17.6
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~ 221 (418)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999998776654
No 459
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.47 E-value=0.037 Score=46.08 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.1
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 460
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.46 E-value=0.2 Score=50.01 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCCCceeecCCCCcHHHH-HHHHHHHh---CCcEEEEcc
Q 039866 198 PPKGVLLYGPPGTGKTLM-ARACAAQT---NATFLKLAG 232 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~l-akala~~l---~~~~~~i~~ 232 (418)
..+.+++.||+|+|||+. +-.+...+ +...+.+..
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~P 58 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAP 58 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECc
Confidence 345799999999999986 33333322 444444443
No 461
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.46 E-value=0.037 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.7
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.46 E-value=0.036 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.1
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-+.|.|++|+||||.++.+++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999987
No 463
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.45 E-value=0.038 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.1
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 464
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.45 E-value=0.035 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~ 221 (418)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999999963
No 465
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.43 E-value=0.035 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++|.|++|+|||+|+++++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 466
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.38 E-value=0.068 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l 223 (418)
..+.|.|+||+|||||.++++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 348899999999999999999754
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.038 Score=46.23 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.5
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~ 221 (418)
.+++.|++|+|||+|++++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 468
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.33 E-value=0.032 Score=55.14 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.5
Q ss_pred CCCCC--ceeecCCCCcHHHHHHHHHHH
Q 039866 197 RPPKG--VLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 197 ~~~~~--vLl~Gp~GtGKT~lakala~~ 222 (418)
.++.. +.|.||+|+|||||+++++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44445 789999999999999999875
No 469
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.32 E-value=0.19 Score=49.89 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=16.6
Q ss_pred CCCCceeecCCCCcHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMA 216 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~la 216 (418)
..+.+++.||+|+|||..+
T Consensus 7 ~g~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp TTCEEEECCCTTSSTTTTH
T ss_pred CCCCEEEEcCCCCCHHHHH
Confidence 4567999999999999975
No 470
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.30 E-value=0.04 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++|.|++|+|||+|++++...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 471
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.29 E-value=0.033 Score=46.46 Aligned_cols=21 Identities=48% Similarity=0.806 Sum_probs=18.9
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~ 221 (418)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999864
No 472
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.25 E-value=0.042 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++|.|++|+|||+|++++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 473
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.25 E-value=0.019 Score=50.31 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=21.8
Q ss_pred CCCCCCceeecCCCCcHHHHHHHHHHH
Q 039866 196 VRPPKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 196 ~~~~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
+.+...+.|.|++|+|||+|.++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344455999999999999999998653
No 474
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.24 E-value=0.019 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred ceeecCCCCcHHHHHHHHHHHh
Q 039866 202 VLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 202 vLl~Gp~GtGKT~lakala~~l 223 (418)
+.|.||+|+|||+++++++..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6789999999999999999876
No 475
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.22 E-value=0.14 Score=57.95 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
+++..+-|.||+|+||||+++.++...
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 444558899999999999999999843
No 476
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.21 E-value=0.04 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.0
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.20 E-value=0.043 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.3
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 478
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.18 E-value=0.031 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..+.|.|+||+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 479
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.18 E-value=0.042 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.8
Q ss_pred CCceeecCCCCcHHHHHHHHHHHh
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~l 223 (418)
..++|.|++|+|||+++..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 480
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.18 E-value=0.038 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.8
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999753
No 481
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.17 E-value=0.14 Score=47.41 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhccccchHHHHhcCCCCCCCceeecC-CCCcHHHHHHHHHHHh---CCcEEEEccc
Q 039866 171 EKQIQELIEAIVLPMTHKERFQKLGVRPPKGVLLYGP-PGTGKTLMARACAAQT---NATFLKLAGP 233 (418)
Q Consensus 171 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp-~GtGKT~lakala~~l---~~~~~~i~~s 233 (418)
.++++.|+..+..... + .+++.++++|+ +|+|||++|-.+|..+ |..++.|++.
T Consensus 63 ~Ea~r~lrt~l~~~~~--------~-~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANP--------D-SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp HHHHHHHHHHHHHSST--------T-CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhhcc--------C-CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4566666666632211 1 34556888876 8999999999998876 7788888874
No 482
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.16 E-value=0.04 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 483
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.15 E-value=0.041 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.3
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 484
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.14 E-value=0.23 Score=49.38 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.7
Q ss_pred CceeecCCCCcHHH
Q 039866 201 GVLLYGPPGTGKTL 214 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~ 214 (418)
.+++.||+|+|||+
T Consensus 21 ~~lv~a~TGsGKT~ 34 (451)
T 2jlq_A 21 LTIMDLHPGAGKTK 34 (451)
T ss_dssp EEEECCCTTSSCCT
T ss_pred eEEEECCCCCCHhh
Confidence 46999999999998
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.13 E-value=0.046 Score=47.07 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.8
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
...+++.|++|+|||+|++++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999753
No 486
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.12 E-value=0.11 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=16.8
Q ss_pred CCCceeecCCCCcHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARAC 219 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakal 219 (418)
.+++++.+|+|+|||..+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999954444
No 487
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.11 E-value=0.045 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.++|.|++|+|||+|++++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999874
No 488
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.11 E-value=0.045 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 489
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.07 E-value=0.039 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
...+++.|++|+|||++++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999873
No 490
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.05 E-value=0.047 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
-.+++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 491
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.05 E-value=0.048 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 492
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.01 E-value=0.044 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.2
Q ss_pred CceeecCCCCcHHHHHHHHHHH
Q 039866 201 GVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~ 222 (418)
.+++.|++|+|||+|++++...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 493
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.99 E-value=0.043 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred CCceeecCCCCcHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~ 221 (418)
..+++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999965
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.99 E-value=0.046 Score=51.71 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457999999999999999999875
No 495
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.99 E-value=0.048 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred CCceeecCCCCcHHHHHHHHHHH
Q 039866 200 KGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 200 ~~vLl~Gp~GtGKT~lakala~~ 222 (418)
..++|.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999999874
No 496
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.98 E-value=0.064 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred CCCceeecCCCCcHHHHHHHHHHHh
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~l 223 (418)
...+.|.||+|+|||||+++++ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3457899999999999999999 54
No 497
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.93 E-value=0.042 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCCCceeecCCCCcHHHHHHHHHH
Q 039866 198 PPKGVLLYGPPGTGKTLMARACAA 221 (418)
Q Consensus 198 ~~~~vLl~Gp~GtGKT~lakala~ 221 (418)
+...+++.|++|+|||+|++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 344599999999999999999864
No 498
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.92 E-value=0.075 Score=46.92 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred CCCCCceeecCCCCcHHHHHHHHHHHhCC-cEEEEccchhhh
Q 039866 197 RPPKGVLLYGPPGTGKTLMARACAAQTNA-TFLKLAGPQLVQ 237 (418)
Q Consensus 197 ~~~~~vLl~Gp~GtGKT~lakala~~l~~-~~~~i~~s~l~~ 237 (418)
.|..-++|+|.||+||+++|+.+...++. .+..+.+++-+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 35566999999999999999999887753 355566665443
No 499
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.92 E-value=0.17 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCCceeecCCCCcHHHHHHHHHHH
Q 039866 199 PKGVLLYGPPGTGKTLMARACAAQ 222 (418)
Q Consensus 199 ~~~vLl~Gp~GtGKT~lakala~~ 222 (418)
...+++.|++|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 500
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.89 E-value=0.073 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.6
Q ss_pred CceeecCCCCcHHHHHHHHHHHh
Q 039866 201 GVLLYGPPGTGKTLMARACAAQT 223 (418)
Q Consensus 201 ~vLl~Gp~GtGKT~lakala~~l 223 (418)
-++|.||.|+||||+++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
Done!