BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039867
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis
thaliana GN=NERD PE=1 SV=3
Length = 1773
Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 12/241 (4%)
Query: 45 HICFKCDKAPKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE---LVLRKEEKKDV 101
H+C KC+K + C C ++C C +A F ++G+KGLC+ C+E L+ RK+++K
Sbjct: 646 HLCSKCEKTATYLCYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQQEK-- 703
Query: 102 DPNQCKNDFSDPSTKEFFFYDYWRIIKKKECLTSEEVIAASNLLKRGENYK----FASDS 157
+P Q DF+D ++ E+ F DYW +K + L+ EE+ A LK E AS++
Sbjct: 704 EPAQL--DFNDKTSWEYLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASET 761
Query: 158 DEYDIGKEKKSSKRKRPKSSKRKRPKRKQSAMKSKFKSSRKEFIGWGSKSLLEFLVSIGK 217
D G S K+ K+ R + + + S K+ E + W SK LL+ +V + +
Sbjct: 762 DYVTDGGSDSDSSPKKRKTRSRSKSGSAEKILSSGDKNLSDETMEWASKELLDLVVHMRR 821
Query: 218 DTTRKLSKQVVAIIIREYCKENNLFHPDKK-EICCDAKLQALLGRKSVEKRKLCELLTIH 276
L V ++ Y K NL P +K ++ CD++LQ L G+ V ++ LL H
Sbjct: 822 GDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSH 881
Query: 277 F 277
F
Sbjct: 882 F 882
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 7/238 (2%)
Query: 45 HICFKCDKAPKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELVLRKEEKKDVDPN 104
HIC C KA + C C ++C C+ +A++ +V+G+ GLC C++ ++ E D
Sbjct: 157 HICGTCQKASSYMCYTCTFSVCKRCIKDADYVIVRGNMGLCGTCIKPIMLIENIAQGDNE 216
Query: 105 QCKNDFSDPSTKEFFFYDYWRIIKKKECLTSEEVIAASNLLKRGENY--KFASDSDEYD- 161
K DF D + E+ F YW +K++ LT +E+ A+N K N K S +D +
Sbjct: 217 AVKVDFDDKLSWEYLFKVYWLCLKEELSLTVDELTRANNPWKEVPNTAPKVESQNDHTNN 276
Query: 162 --IGKEKKSSKRKRPKSSKRKRPKRKQSAMKSKFKSSRKEFIGWGSKSLLEFLVSIGKDT 219
+ +KR+R S P + S W +K LLEF+ +
Sbjct: 277 RALDVAVNGTKRRRTSDSP-TLPNKLDGKNPSNILKKAPGDTSWATKELLEFVSFMKNGD 335
Query: 220 TRKLSKQVVAIIIREYCKENNLFHP-DKKEICCDAKLQALLGRKSVEKRKLCELLTIH 276
T LS+ V ++ +Y K+ NL P K ++ CD L L G++ V ++ +LL H
Sbjct: 336 TSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESH 393
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 187 SAMKSKFKSSRKEFIGWGSKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHP-D 245
S+ K K + R EF+GWGS+ L+EFL S+GKDT+ +S+ V+ I +Y + L P +
Sbjct: 16 SSRKRKARPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSN 75
Query: 246 KKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENLDCSEEELLCSSENEDDDSVACKRQ 305
KK++ CD +L L G +++ + K+ +LL H+ EN D S+ + L ED+ + C
Sbjct: 76 KKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQDDSDFDFLY----EDEPQIIC--- 128
Query: 306 MHSSSKHKAQNLLAKTPQ 323
HS K + + K P+
Sbjct: 129 -HSEKIAKRTSKVVKKPR 145
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 220 TRKLSKQVVAIIIREYCKENNLFHP-DKKEICCDAKLQALLGRKSVEKRKLCELLTIHF 277
+ +L + V +I +Y KE++L +P D++EI CD K++ + G+K + + +LLT H
Sbjct: 136 SEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK-MTMFSMNKLLTKHL 193
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 235 YCKENNLFHPD-KKEICCDAKLQALLGRKSVEKRKLCELLTIHFAE 279
Y K +NL +P+ KKEI CD KL+ +LG KS ++ ++L H E
Sbjct: 151 YIKAHNLQNPNNKKEILCDEKLELILG-KSTNMFEMHKILASHMTE 195
>sp|Q3MHV9|SERC1_BOVIN Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1
Length = 453
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 CDKAPKFYCLCCPSAICGPC--LYEAEFAVVKGDKGLCDECLELVLRKEEKKDVDPNQCK 107
C AP C CCPS L A F +V G+C C+ L+ EE+ + P C+
Sbjct: 18 CGSAPCLLCRCCPSGNNSTVTRLIYALFLLV----GVCVACVMLIPGMEEQLNKIPGFCE 73
Query: 108 ND 109
N+
Sbjct: 74 NE 75
>sp|Q9C7G0|MA658_ARATH 65-kDa microtubule-associated protein 8 OS=Arabidopsis thaliana
GN=MAP65-8 PE=1 SV=2
Length = 562
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 19/171 (11%)
Query: 29 LTGLVHFSYEAYRSYLHICFKCDKAPKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDEC 88
L L+ SYE + + H+ AP +C P +I + +AE V + D+
Sbjct: 264 LWNLMDASYEDRQKFFHVIDLLSSAPS--DVCAPGSITLDIIQQAEAEVKRLDQLKASRI 321
Query: 89 LELVLRKEEKKDVDPNQCKNDFSDPSTK-----------EFFFYDYWRIIKKKECLTSEE 137
EL ++K+ K+++ + PST+ E D + +K EE
Sbjct: 322 KELFIKKQ--KELEDTCNMSHMETPSTEMGNITNLVDSGEVDHVDLLAAMDEKIARAKEE 379
Query: 138 VIAASNLLKRGENYKFASDS----DEYDIGKEKKSSKRKRPKSSKRKRPKR 184
+ ++++ + + ASD +EYD + + S R ++ +R R
Sbjct: 380 AASRKGIIEKVDRWMLASDEERWLEEYDQDENRYSVSRNAHRNLRRAERAR 430
>sp|Q7TNK0|SERC1_RAT Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1
Length = 453
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 CDKAPKFYCLCCPSAICGPC--LYEAEFAVVKGDKGLCDECLELVLRKEEKKDVDPNQCK 107
C AP C CCPS L A F +V G+C C+ L+ EE+ + P C+
Sbjct: 18 CGSAPCLLCRCCPSGNNSTVTRLIYALFLLV----GVCVACVMLIPGMEEQLNKIPGFCE 73
Query: 108 ND 109
N+
Sbjct: 74 NE 75
>sp|Q5R419|SERC1_PONAB Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1
Length = 453
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 CDKAPKFYCLCCPSAICGPC--LYEAEFAVVKGDKGLCDECLELVLRKEEKKDVDPNQCK 107
C AP C CCPS L A F +V G+C C+ L+ EE+ + P C+
Sbjct: 18 CGSAPCLLCRCCPSGNNSTVTRLIYALFLLV----GVCVACVMLIPGMEEQLNKIPGFCE 73
Query: 108 ND 109
N+
Sbjct: 74 NE 75
>sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1
Length = 453
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 CDKAPKFYCLCCPSAICGPC--LYEAEFAVVKGDKGLCDECLELVLRKEEKKDVDPNQCK 107
C AP C CCPS L A F +V G+C C+ L+ EE+ + P C+
Sbjct: 18 CGSAPCLLCRCCPSGNNSTVTRLIYALFLLV----GVCVACVMLIPGMEEQLNKIPGFCE 73
Query: 108 ND 109
N+
Sbjct: 74 NE 75
>sp|Q9NRX5|SERC1_HUMAN Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1
Length = 453
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 CDKAPKFYCLCCPSAICGPC--LYEAEFAVVKGDKGLCDECLELVLRKEEKKDVDPNQCK 107
C AP C CCPS L A F +V G+C C+ L+ EE+ + P C+
Sbjct: 18 CGSAPCLLCRCCPSGNNSTVTRLIYALFLLV----GVCVACVMLIPGMEEQLNKIPGFCE 73
Query: 108 ND 109
N+
Sbjct: 74 NE 75
>sp|B2VI65|METE_ERWT9 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=metE PE=3 SV=1
Length = 757
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 263 SVEKRKLCELLTIHFAENLD-CSEEELLCSSENEDDD------SVACKRQMHSSSKHKA- 314
SVE R L E + FA L CSE LL S+ N +D S + + HS+ H A
Sbjct: 334 SVETR-LDEEVKSWFAFALQKCSELALLSSALNNNDPASLEAWSAPIRSRKHSTRVHNAA 392
Query: 315 --QNLLAKTPQEQMRKN 329
Q L A +PQ+ +RKN
Sbjct: 393 VGQRLAAISPQDSLRKN 409
>sp|B8CRF6|CLPX_SHEPW ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=clpX PE=3 SV=1
Length = 423
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 35/129 (27%)
Query: 49 KCDKAPKFYCLCCPSA-------ICGPCLYEAEFAVVKGDKGLCDECLEL---VLRKEEK 98
K D YC C + I GP +Y +CDEC+EL ++R EE
Sbjct: 5 KGDGGKLLYCSFCGKSQHEVRKLIAGPSVY------------VCDECVELCNDIIR-EEI 51
Query: 99 KDVDPNQCKNDFSDPSTKEFFFYDYWRII---KKKECLTSEEVIAASNLLKRGENYKFAS 155
K++ P Q ++ P DY +I K K+ L+ +A N KR +N AS
Sbjct: 52 KEISPKQDQDKLPTPHELRAHLDDY--VIGQDKAKKVLS----VAVYNHYKRLKN---AS 102
Query: 156 DSDEYDIGK 164
D ++GK
Sbjct: 103 PKDGVELGK 111
>sp|P27964|VL1_HPVME Major capsid protein L1 OS=Human papillomavirus type ME180 GN=L1
PE=3 SV=1
Length = 505
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 152 KFASDSDEYDIGKE--KKSSKRKRPKSSKRKRPKRKQSAMKSKFKSSR 197
KF+S+ D++ +G++ ++ R+RP RKRP +A SK K R
Sbjct: 455 KFSSELDQFPLGRKFLLQAGVRRRPTIGPRKRPATATTASTSKHKRKR 502
>sp|P36741|VL1_HPV45 Major capsid protein L1 OS=Human papillomavirus type 45 GN=L1 PE=3
SV=1
Length = 539
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 152 KFASDSDEYDIGKE--KKSSKRKRPKSSKRKRP 182
KF+SD D+Y +G++ ++ R+RP RKRP
Sbjct: 484 KFSSDLDQYPLGRKFLVQAGLRRRPTIGPRKRP 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,830,294
Number of Sequences: 539616
Number of extensions: 4890876
Number of successful extensions: 22764
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 21946
Number of HSP's gapped (non-prelim): 663
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)