Query 039867
Match_columns 332
No_of_seqs 176 out of 522
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v32_A AT5G08430, hypothetical 100.0 2.9E-33 1E-37 230.1 9.4 94 193-286 5-99 (101)
2 1v31_A Hypothetical protein RA 99.9 2.1E-23 7.3E-28 168.5 6.0 73 203-281 13-86 (93)
3 1uhr_A SWI/SNF related, matrix 99.9 2.4E-23 8.3E-28 168.3 4.8 73 203-281 13-86 (93)
4 4gne_A Histone-lysine N-methyl 99.7 1.9E-17 6.3E-22 137.3 3.6 72 13-85 27-98 (107)
5 2ysm_A Myeloid/lymphoid or mix 98.4 1.6E-07 5.6E-12 76.4 3.1 74 14-90 23-103 (111)
6 3v43_A Histone acetyltransfera 98.2 3.5E-07 1.2E-11 75.1 1.0 69 20-89 31-110 (112)
7 2kwj_A Zinc finger protein DPF 98.2 3.7E-07 1.3E-11 75.3 1.0 80 13-95 23-112 (114)
8 3c6w_A P28ING5, inhibitor of g 97.1 0.00017 5.8E-09 53.3 1.5 31 13-43 22-53 (59)
9 2vnf_A ING 4, P29ING4, inhibit 97.0 0.00022 7.6E-09 52.7 1.5 31 13-43 23-54 (60)
10 2yql_A PHD finger protein 21A; 97.0 0.00021 7.2E-09 51.8 1.3 29 14-44 22-52 (56)
11 2puy_A PHD finger protein 21A; 96.9 0.00024 8.4E-09 52.1 1.5 29 14-44 18-48 (60)
12 1xwh_A Autoimmune regulator; P 96.9 0.00024 8E-09 53.3 1.3 28 14-43 21-50 (66)
13 2g6q_A Inhibitor of growth pro 96.9 0.00029 9.8E-09 52.7 1.5 31 13-43 24-55 (62)
14 1wen_A Inhibitor of growth fam 96.9 0.00033 1.1E-08 53.6 1.8 31 13-43 29-60 (71)
15 2e6r_A Jumonji/ARID domain-con 96.8 0.00019 6.7E-09 57.3 0.3 41 12-54 30-72 (92)
16 1mm2_A MI2-beta; PHD, zinc fin 96.8 0.00038 1.3E-08 51.5 1.8 29 14-44 22-52 (61)
17 3dac_M MDM4 protein; MDMX, MDM 96.8 0.0019 6.6E-08 55.0 6.4 75 205-280 28-107 (130)
18 1f62_A Transcription factor WS 96.8 0.00032 1.1E-08 49.6 0.9 30 13-44 15-46 (51)
19 2l5u_A Chromodomain-helicase-D 96.7 0.00042 1.4E-08 51.2 0.9 28 14-43 24-53 (61)
20 1weu_A Inhibitor of growth fam 96.6 0.00067 2.3E-08 54.6 2.0 31 13-43 49-80 (91)
21 3fea_A MDM4 protein; HDMX, HDM 96.6 0.0033 1.1E-07 51.6 5.9 74 205-279 19-97 (100)
22 1fp0_A KAP-1 corepressor; PHD 96.5 0.0008 2.7E-08 53.9 1.7 29 14-44 38-68 (88)
23 2jmi_A Protein YNG1, ING1 homo 96.4 0.00099 3.4E-08 53.5 1.9 31 13-43 39-70 (90)
24 2ku3_A Bromodomain-containing 96.4 0.00062 2.1E-08 52.2 0.5 31 12-44 32-62 (71)
25 3asl_A E3 ubiquitin-protein li 96.3 0.0013 4.4E-08 50.1 1.8 32 11-44 31-65 (70)
26 2ysm_A Myeloid/lymphoid or mix 96.3 0.0013 4.5E-08 53.2 1.7 38 13-54 69-108 (111)
27 2l43_A N-teminal domain from h 96.2 0.001 3.6E-08 52.7 0.8 31 12-44 41-71 (88)
28 2e6s_A E3 ubiquitin-protein li 96.2 0.0017 5.8E-08 50.4 1.7 32 11-44 39-73 (77)
29 2lri_C Autoimmune regulator; Z 95.9 0.002 6.7E-08 48.7 1.0 29 14-44 25-55 (66)
30 1z1m_A Ubiquitin-protein ligas 95.9 0.01 3.5E-07 50.0 5.2 73 205-278 31-105 (119)
31 1ycq_A MDM2, MDM2; anti-oncoge 95.9 0.016 5.4E-07 48.1 6.3 71 205-276 15-87 (107)
32 3shb_A E3 ubiquitin-protein li 95.7 0.0037 1.3E-07 48.6 1.7 30 13-44 41-73 (77)
33 2z5s_M MDM4 protein, zebrafish 95.6 0.019 6.6E-07 49.3 6.1 76 205-281 27-107 (140)
34 2kwj_A Zinc finger protein DPF 95.6 0.0034 1.2E-07 51.4 1.2 30 12-43 72-103 (114)
35 2yt5_A Metal-response element- 95.6 0.0036 1.2E-07 46.2 1.2 32 11-44 21-57 (66)
36 1x4i_A Inhibitor of growth pro 95.5 0.0035 1.2E-07 47.7 0.9 32 12-43 18-50 (70)
37 3o36_A Transcription intermedi 95.4 0.005 1.7E-07 53.7 1.8 29 14-44 17-47 (184)
38 3v43_A Histone acetyltransfera 95.3 0.0063 2.2E-07 49.6 1.8 31 12-44 76-108 (112)
39 2ro1_A Transcription intermedi 95.2 0.0062 2.1E-07 54.0 1.7 30 13-44 14-45 (189)
40 3u5n_A E3 ubiquitin-protein li 95.2 0.0065 2.2E-07 54.1 1.8 36 13-52 19-56 (207)
41 2k16_A Transcription initiatio 95.1 0.0056 1.9E-07 46.3 0.9 29 13-43 33-63 (75)
42 1wev_A Riken cDNA 1110020M19; 94.6 0.011 3.8E-07 46.6 1.6 33 11-45 31-69 (88)
43 2axi_A Ubiquitin-protein ligas 94.6 0.036 1.2E-06 46.4 4.7 71 205-276 15-87 (115)
44 3shb_A E3 ubiquitin-protein li 93.5 0.026 8.9E-07 43.8 1.6 54 37-90 19-76 (77)
45 2lbm_A Transcriptional regulat 93.2 0.012 4.2E-07 50.7 -0.7 28 14-43 76-112 (142)
46 2e6s_A E3 ubiquitin-protein li 92.8 0.041 1.4E-06 42.6 1.9 61 26-89 10-75 (77)
47 3ask_A E3 ubiquitin-protein li 92.1 0.064 2.2E-06 49.5 2.5 54 36-90 166-224 (226)
48 2e6r_A Jumonji/ARID domain-con 92.0 0.081 2.8E-06 42.0 2.6 57 35-92 6-67 (92)
49 3asl_A E3 ubiquitin-protein li 91.8 0.048 1.7E-06 41.3 1.0 53 37-90 11-68 (70)
50 1fp0_A KAP-1 corepressor; PHD 91.3 0.056 1.9E-06 43.2 1.0 60 37-97 17-78 (88)
51 2puy_A PHD finger protein 21A; 91.1 0.12 4E-06 37.6 2.5 48 45-93 6-54 (60)
52 1xwh_A Autoimmune regulator; P 90.5 0.11 3.8E-06 38.5 2.0 45 45-90 9-54 (66)
53 2lv9_A Histone-lysine N-methyl 90.5 0.091 3.1E-06 42.0 1.6 30 12-43 41-71 (98)
54 2yql_A PHD finger protein 21A; 90.4 0.11 3.7E-06 37.3 1.8 45 45-90 10-55 (56)
55 1mm2_A MI2-beta; PHD, zinc fin 90.4 0.15 5.2E-06 37.4 2.6 46 45-91 10-56 (61)
56 1wev_A Riken cDNA 1110020M19; 90.3 0.085 2.9E-06 41.5 1.2 55 45-99 17-80 (88)
57 3o36_A Transcription intermedi 89.3 0.12 4.1E-06 44.9 1.5 46 45-91 5-51 (184)
58 2lri_C Autoimmune regulator; Z 88.8 0.12 4.1E-06 38.8 1.0 45 45-90 13-58 (66)
59 2l5u_A Chromodomain-helicase-D 88.8 0.14 4.7E-06 37.6 1.3 45 45-90 12-57 (61)
60 2ro1_A Transcription intermedi 88.5 0.2 6.8E-06 44.2 2.3 46 45-91 3-49 (189)
61 2l43_A N-teminal domain from h 88.2 0.17 5.8E-06 39.8 1.5 44 45-91 26-75 (88)
62 3u5n_A E3 ubiquitin-protein li 87.4 0.17 5.7E-06 45.0 1.1 46 45-91 8-54 (207)
63 3ql9_A Transcriptional regulat 86.9 0.094 3.2E-06 44.6 -0.7 27 15-43 71-106 (129)
64 1f62_A Transcription factor WS 86.8 0.18 6.2E-06 35.2 0.8 44 46-90 2-49 (51)
65 1wew_A DNA-binding family prot 86.7 0.17 5.9E-06 38.6 0.8 32 12-43 29-67 (78)
66 2ku3_A Bromodomain-containing 86.4 0.23 7.9E-06 37.8 1.3 43 45-90 17-65 (71)
67 2ri7_A Nucleosome-remodeling f 86.2 0.086 2.9E-06 45.2 -1.4 30 12-43 22-54 (174)
68 1we9_A PHD finger family prote 85.5 0.23 7.8E-06 36.2 0.9 32 10-43 19-53 (64)
69 2rsd_A E3 SUMO-protein ligase 85.4 0.28 9.6E-06 36.5 1.3 32 12-43 23-60 (68)
70 2kgg_A Histone demethylase jar 84.5 0.15 5.3E-06 36.1 -0.5 34 10-44 15-50 (52)
71 2lbm_A Transcriptional regulat 84.2 0.24 8.3E-06 42.6 0.6 46 44-89 63-115 (142)
72 2vpb_A Hpygo1, pygopus homolog 84.0 0.21 7.3E-06 37.3 0.1 34 9-43 20-61 (65)
73 2xb1_A Pygopus homolog 2, B-ce 83.7 0.32 1.1E-05 39.4 1.1 33 10-43 16-56 (105)
74 1vfy_A Phosphatidylinositol-3- 83.5 0.45 1.5E-05 35.9 1.7 57 38-95 6-70 (73)
75 3o70_A PHD finger protein 13; 82.1 0.43 1.5E-05 35.8 1.1 30 12-43 32-62 (68)
76 3o7a_A PHD finger protein 13 v 81.9 0.33 1.1E-05 34.3 0.4 30 12-43 17-47 (52)
77 3ql9_A Transcriptional regulat 81.5 0.33 1.1E-05 41.2 0.3 28 45-72 58-86 (129)
78 2yt5_A Metal-response element- 81.0 0.48 1.6E-05 34.6 1.0 47 44-90 6-60 (66)
79 1wem_A Death associated transc 80.1 0.2 6.9E-06 37.8 -1.3 30 12-43 29-65 (76)
80 1wee_A PHD finger family prote 79.3 0.61 2.1E-05 34.9 1.1 30 12-43 30-61 (72)
81 3zyq_A Hepatocyte growth facto 78.4 0.72 2.5E-05 41.6 1.5 55 37-92 158-220 (226)
82 3kqi_A GRC5, PHD finger protei 77.2 0.5 1.7E-05 35.7 0.1 31 11-43 23-56 (75)
83 4gne_A Histone-lysine N-methyl 76.6 0.98 3.3E-05 37.0 1.7 43 44-89 15-60 (107)
84 1dvp_A HRS, hepatocyte growth 75.4 0.98 3.3E-05 40.3 1.5 54 38-92 156-217 (220)
85 1wep_A PHF8; structural genomi 75.4 0.28 9.6E-06 37.4 -1.8 32 10-43 24-58 (79)
86 2k16_A Transcription initiatio 70.6 1.3 4.4E-05 33.1 0.9 45 46-91 20-68 (75)
87 1z2q_A LM5-1; membrane protein 69.1 1.7 5.7E-05 33.5 1.3 57 36-92 11-77 (84)
88 1joc_A EEA1, early endosomal a 68.7 1.3 4.5E-05 36.7 0.7 54 38-91 61-122 (125)
89 2yw8_A RUN and FYVE domain-con 66.8 1.6 5.3E-05 33.6 0.7 56 38-93 11-74 (82)
90 2jrp_A Putative cytoplasmic pr 64.8 2 6.7E-05 33.9 0.9 43 44-92 18-61 (81)
91 3t7l_A Zinc finger FYVE domain 64.7 2.2 7.4E-05 33.4 1.2 60 38-97 12-79 (90)
92 3a1b_A DNA (cytosine-5)-methyl 63.9 1.5 5.1E-05 38.5 0.1 28 44-71 79-109 (159)
93 2do5_A Splicing factor 3B subu 62.2 24 0.00081 25.8 6.2 44 197-242 5-48 (58)
94 2jne_A Hypothetical protein YF 61.3 2.1 7.2E-05 35.1 0.5 30 63-92 61-91 (101)
95 2zet_C Melanophilin; complex, 60.6 3.6 0.00012 35.5 1.9 49 43-95 67-121 (153)
96 1x4u_A Zinc finger, FYVE domai 60.4 2.5 8.6E-05 32.5 0.8 49 45-93 15-77 (84)
97 2ri7_A Nucleosome-remodeling f 58.1 1.1 3.8E-05 38.2 -1.7 44 49-92 12-60 (174)
98 1wfk_A Zinc finger, FYVE domai 57.3 3.4 0.00011 32.3 1.1 51 45-95 10-67 (88)
99 1y02_A CARP2, FYVE-ring finger 56.6 4.6 0.00016 33.6 1.8 43 45-92 20-67 (120)
100 2pv0_B DNA (cytosine-5)-methyl 54.8 3 0.0001 41.2 0.5 29 44-72 93-124 (386)
101 1wil_A KIAA1045 protein; ring 53.2 2.8 9.7E-05 33.6 0.0 57 44-100 15-85 (89)
102 3mpx_A FYVE, rhogef and PH dom 53.1 2.8 9.7E-05 39.9 0.0 55 38-92 367-430 (434)
103 2jun_A Midline-1; B-BOX, TRIM, 52.6 2.7 9.3E-05 32.3 -0.2 28 45-72 4-35 (101)
104 1we9_A PHD finger family prote 48.5 5.5 0.00019 28.7 1.0 44 47-90 9-57 (64)
105 2kwl_A ACP, acyl carrier prote 48.3 30 0.001 25.1 5.1 57 223-281 5-61 (84)
106 1wen_A Inhibitor of growth fam 48.2 6.2 0.00021 29.7 1.2 42 45-90 17-64 (71)
107 1zbd_B Rabphilin-3A; G protein 47.8 5.9 0.0002 33.4 1.1 51 43-94 54-110 (134)
108 2fc7_A ZZZ3 protein; structure 47.1 8 0.00027 30.0 1.7 29 44-72 21-57 (82)
109 1wil_A KIAA1045 protein; ring 46.3 4.8 0.00016 32.3 0.3 32 10-43 26-71 (89)
110 1wig_A KIAA1808 protein; LIM d 46.2 14 0.00048 26.8 2.9 36 58-96 31-67 (73)
111 2lq6_A Bromodomain-containing 45.2 4.7 0.00016 31.5 0.1 19 12-30 30-48 (87)
112 2rgt_A Fusion of LIM/homeobox 44.4 13 0.00043 31.3 2.7 73 21-95 25-129 (169)
113 1tot_A CREB-binding protein; z 43.6 3.8 0.00013 29.3 -0.6 28 45-72 7-37 (52)
114 2e5r_A Dystrobrevin alpha; ZZ 43.3 6.3 0.00022 29.1 0.6 28 45-72 12-44 (63)
115 2vnf_A ING 4, P29ING4, inhibit 42.7 5.4 0.00018 28.9 0.1 42 45-90 11-58 (60)
116 2yqq_A Zinc finger HIT domain- 42.4 8.1 0.00028 28.4 1.0 27 41-67 9-35 (56)
117 2dip_A Zinc finger SWIM domain 41.5 7.2 0.00025 31.3 0.7 29 45-73 32-65 (98)
118 2ebv_A Nuclear pore complex pr 38.2 20 0.00067 26.4 2.5 30 31-62 23-52 (57)
119 2ffw_A Midline-1; B-BOX, ring 37.0 6 0.0002 30.0 -0.5 28 45-72 31-62 (78)
120 1f80_D Acyl carrier protein; t 36.9 23 0.00079 25.4 2.8 58 222-281 2-59 (81)
121 4bbq_A Lysine-specific demethy 36.7 13 0.00043 29.6 1.4 26 19-44 79-110 (117)
122 2ebr_A Nuclear pore complex pr 36.3 24 0.00083 24.9 2.7 30 31-62 3-32 (47)
123 3pur_A Lysine-specific demethy 36.1 9.1 0.00031 39.3 0.6 34 9-44 54-90 (528)
124 3vk6_A E3 ubiquitin-protein li 35.1 4.7 0.00016 33.0 -1.4 51 45-99 2-54 (101)
125 2d8v_A Zinc finger FYVE domain 34.1 9 0.00031 29.3 0.1 26 47-72 11-37 (67)
126 1weo_A Cellulose synthase, cat 33.8 12 0.00042 30.1 0.9 46 43-92 15-68 (93)
127 3kv5_D JMJC domain-containing 33.5 6.6 0.00023 39.5 -0.9 32 10-43 49-83 (488)
128 2jmi_A Protein YNG1, ING1 homo 32.1 17 0.0006 28.7 1.5 44 45-92 27-77 (90)
129 2ej4_A Zinc finger protein ZIC 30.9 32 0.0011 24.7 2.7 34 20-53 30-71 (95)
130 2eqe_A Tumor necrosis factor, 30.3 14 0.00049 26.3 0.7 22 68-89 17-39 (48)
131 2iyb_E Testin, TESS, TES; LIM 29.2 27 0.00091 24.6 2.0 24 66-90 38-62 (65)
132 2cnr_A FAS, ACP, acyl carrier 29.0 96 0.0033 21.9 5.1 57 223-281 3-59 (82)
133 1dv5_A APO-DCP, APO-D-alanyl c 28.8 44 0.0015 24.4 3.2 56 224-281 1-56 (80)
134 2lol_A ACP, acyl carrier prote 28.4 99 0.0034 21.9 5.0 57 223-281 2-58 (81)
135 3kv4_A PHD finger protein 8; e 28.3 4.8 0.00016 40.2 -2.9 32 10-43 17-51 (447)
136 1x6a_A LIMK-2, LIM domain kina 25.9 67 0.0023 23.2 3.7 34 58-93 41-75 (81)
137 3rsn_A SET1/ASH2 histone methy 25.5 31 0.0011 30.6 2.1 22 11-34 18-39 (177)
138 1x4s_A Protein FON, zinc finge 25.5 13 0.00045 27.6 -0.3 29 43-71 10-43 (59)
139 1weu_A Inhibitor of growth fam 24.9 50 0.0017 26.0 3.0 42 45-90 37-84 (91)
140 1x3o_A Acyl carrier protein; s 24.6 58 0.002 22.9 3.1 57 223-281 1-57 (80)
141 2dnw_A Acyl carrier protein; A 24.5 69 0.0024 24.2 3.7 60 220-281 8-67 (99)
142 2lv2_A Insulinoma-associated p 23.8 20 0.00069 27.1 0.5 22 44-65 28-66 (85)
143 1bor_A Transcription factor PM 22.2 44 0.0015 22.9 2.0 40 45-92 7-47 (56)
144 2d8z_A Four and A half LIM dom 22.2 62 0.0021 22.6 2.8 25 66-91 37-61 (70)
145 1vd4_A Transcription initiatio 21.8 37 0.0013 23.1 1.5 9 56-64 40-48 (62)
146 3gj8_B Nuclear pore complex pr 21.6 31 0.001 26.9 1.1 30 32-63 58-87 (92)
147 1wg2_A Zinc finger (AN1-like) 21.6 34 0.0012 25.8 1.3 27 45-72 16-45 (64)
148 3lqh_A Histone-lysine N-methyl 21.3 11 0.00038 33.2 -1.6 20 13-34 21-40 (183)
149 1z60_A TFIIH basal transcripti 20.9 19 0.00066 26.5 -0.1 23 47-69 18-44 (59)
150 2l4b_A Acyl carrier protein; i 20.8 32 0.0011 25.3 1.0 58 223-281 4-63 (88)
151 2fk4_A Protein E6; zinc bindin 20.8 25 0.00085 26.9 0.4 36 56-91 25-66 (75)
152 2jq3_A Apolipoprotein C-III; A 20.5 40 0.0014 26.3 1.5 14 119-132 49-62 (79)
153 1wfh_A Zinc finger (AN1-like) 20.4 37 0.0013 25.6 1.3 27 45-72 16-45 (64)
No 1
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=100.00 E-value=2.9e-33 Score=230.11 Aligned_cols=94 Identities=37% Similarity=0.703 Sum_probs=89.3
Q ss_pred cccCcccccccCcHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-CccccchhhhhhhCCceechHhHHH
Q 039867 193 FKSSRKEFIGWGSKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCDAKLQALLGRKSVEKRKLCE 271 (332)
Q Consensus 193 ~k~k~~~~~~w~S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCDekLk~LFgk~~V~~~~m~k 271 (332)
..+|+.+|+||+|++|++||++||.++++++||++|+++||+|||+||||||.+ |.|+||++|++|||+++|+||+|++
T Consensus 5 ~~~~~~~~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~k 84 (101)
T 1v32_A 5 SSGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYD 84 (101)
T ss_dssp CCSSCCSSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHH
T ss_pred CCCCcceecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHH
Confidence 456789999999999999999999998899999999999999999999999999 9999999999999999999999999
Q ss_pred HHHhcccCCCCchhh
Q 039867 272 LLTIHFAENLDCSEE 286 (332)
Q Consensus 272 LL~~H~~~n~e~s~d 286 (332)
+|++||.++.|++++
T Consensus 85 lL~~Hl~~~~e~~~~ 99 (101)
T 1v32_A 85 LLEKHYKENQDSGPS 99 (101)
T ss_dssp HHHHHSCSCCCCCSS
T ss_pred HHHHHcCcccccCCC
Confidence 999999999877654
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.88 E-value=2.1e-23 Score=168.48 Aligned_cols=73 Identities=21% Similarity=0.375 Sum_probs=68.7
Q ss_pred cCcHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-CccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 203 WGSKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 203 w~S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
-+|++|++| +|..+ +||++|++.||+|||+||||||.+ |.|+||++|+.|||+++|.|++|+++|++||....
T Consensus 13 ~lS~~La~~---lG~~~---~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1v31_A 13 KLSTALMDV---LGIEV---ETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPP 86 (93)
T ss_dssp ECCHHHHHH---SCCSE---ECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCC
T ss_pred ccCHHHHHH---HCCCc---cCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 469999999 78764 999999999999999999999999 99999999999999999999999999999998654
No 3
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.87 E-value=2.4e-23 Score=168.26 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=68.6
Q ss_pred cCcHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-CccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 203 WGSKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 203 w~S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
-+|++|++| +|.. ++||++|++.||+|||+||||||.+ |.|+||++|+.|||+++|+|++|+++|++||....
T Consensus 13 ~lS~~La~~---lG~~---~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 13 KLDPRLARL---LGIH---TQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp EECTTHHHH---TCCS---EEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred CcCHHHHHH---HCCC---ccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 369999999 7876 4999999999999999999999999 99999999999999999999999999999998654
No 4
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.67 E-value=1.9e-17 Score=137.27 Aligned_cols=72 Identities=19% Similarity=0.375 Sum_probs=66.7
Q ss_pred ecccCCCCCchhhhhcccCCCCCCCCCeeecCccccccCCCCccceecCCCCCccccccCceeEEeeCCcccc
Q 039867 13 KFNMSSYNSLYAFRMKLTGLVHFSYEAYRSYLHICFKCDKAPKFYCLCCPSAICGPCLYEAEFAVVKGDKGLC 85 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~~~~~~s~~~W~C~wH~C~~C~k~s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC 85 (332)
-+-||+++||++||+.|+++...|.|.|.||+|.|.+|++++.++|..||+|||.+|+.++.|.....+. +|
T Consensus 27 ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sfC~~c~~g~l~~~~~~~~-~c 98 (107)
T 4gne_A 27 LVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFCKDHEKGALVPSALEGR-LC 98 (107)
T ss_dssp EEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCCEECSSSSCEECTTTCTTSCEECTTTTC-EE
T ss_pred EeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCCCCCcCcCCCCcchhhhccCCcceecCCCCc-ee
Confidence 4579999999999999999999999999999999999999999999999999999999999999966555 44
No 5
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.36 E-value=1.6e-07 Score=76.37 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=60.3
Q ss_pred cccCCCCCchhhhhcccCCCCCC--CCCeeecCc-cccccCCCC----ccceecCCCCCccccccCceeEEeeCCcccch
Q 039867 14 FNMSSYNSLYAFRMKLTGLVHFS--YEAYRSYLH-ICFKCDKAP----KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCD 86 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~~~~~s--~~~W~C~wH-~C~~C~k~s----~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~ 86 (332)
+.|+ .|+++||+.|++....+ .+.|.|+.- .|.+|++.. ...|..|+.+|+..|+....- .|..+.-||.
T Consensus 23 l~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~ 99 (111)
T 2ysm_A 23 FFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCK 99 (111)
T ss_dssp EECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCS-SCCSSCCCCH
T ss_pred eECC--CCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccc-cCCCCCcCCc
Confidence 4675 89999999999996654 689999997 699999886 577999999999999996432 2345678999
Q ss_pred hhhh
Q 039867 87 ECLE 90 (332)
Q Consensus 87 ~C~~ 90 (332)
.|..
T Consensus 100 ~C~~ 103 (111)
T 2ysm_A 100 NCRI 103 (111)
T ss_dssp HHHC
T ss_pred CCcC
Confidence 8864
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.16 E-value=3.5e-07 Score=75.06 Aligned_cols=69 Identities=10% Similarity=0.198 Sum_probs=55.8
Q ss_pred CCchhhhhcccCCC-----CCCCCCeeecCc-cccccCCC-----CccceecCCCCCccccccCceeEEeeCCcccchhh
Q 039867 20 NSLYAFRMKLTGLV-----HFSYEAYRSYLH-ICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDEC 88 (332)
Q Consensus 20 ~C~KayH~~C~~~~-----~~s~~~W~C~wH-~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C 88 (332)
+|+.+||+.|+++. ..+.+.|.|+.. .|.+|+.. ....|..|+.+|+..|+...... +..+.-||..|
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~-~P~~~W~C~~C 109 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR-MPKGMWICQIC 109 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS-CCSSCCCCTTT
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCC-CCCCCeECCCC
Confidence 49999999999873 234789999999 89999975 46679999999999999865443 35557889888
Q ss_pred h
Q 039867 89 L 89 (332)
Q Consensus 89 ~ 89 (332)
.
T Consensus 110 ~ 110 (112)
T 3v43_A 110 R 110 (112)
T ss_dssp S
T ss_pred C
Confidence 5
No 7
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.16 E-value=3.7e-07 Score=75.26 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=63.2
Q ss_pred ecccCCCCCchhhhhcccCCC-----CCCCCCeeecCc-cccccCCC----CccceecCCCCCccccccCceeEEeeCCc
Q 039867 13 KFNMSSYNSLYAFRMKLTGLV-----HFSYEAYRSYLH-ICFKCDKA----PKFYCLCCPSAICGPCLYEAEFAVVKGDK 82 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~~~~-----~~s~~~W~C~wH-~C~~C~k~----s~~~C~~CP~S~Ck~C~~~a~f~~vr~~k 82 (332)
-+-|+ .|+++||+.|++.. ..+.+.|.|+.- .|.+|++. ....|..|+.+|+..|+.... ..|..+.
T Consensus 23 Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl-~~~P~g~ 99 (114)
T 2kwj_A 23 LVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPV-AEPPEGS 99 (114)
T ss_dssp CEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCC-SSCCSSC
T ss_pred CeEeC--CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCc-cCCCCCC
Confidence 35677 69999999999985 345689999987 79999874 567799999999999999643 2345678
Q ss_pred ccchhhhhhhhhh
Q 039867 83 GLCDECLELVLRK 95 (332)
Q Consensus 83 GfC~~C~~~~~lI 95 (332)
-||..|....--+
T Consensus 100 W~C~~C~~~~~~k 112 (114)
T 2kwj_A 100 WSCHLCWELLKEK 112 (114)
T ss_dssp CCCHHHHHHHHHT
T ss_pred eECccccchhhcc
Confidence 8999998765433
No 8
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.06 E-value=0.00017 Score=53.34 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=28.0
Q ss_pred ecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 13 KFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
-.-||.-+|+ ..||+.|+|++..|.++|.||
T Consensus 22 mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 22 MIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp EEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred eeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 4579999999 699999999999999999887
No 9
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=96.97 E-value=0.00022 Score=52.73 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=28.0
Q ss_pred ecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 13 KFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
-.-||.-+|+ ..||+.|+|++..|.++|.||
T Consensus 23 mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~ 54 (60)
T 2vnf_A 23 MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 54 (60)
T ss_dssp EEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred EEEeCCCCCCCceEehhcCCCCcCCCCCEECc
Confidence 4579999999 799999999999899999987
No 10
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.00021 Score=51.80 Aligned_cols=29 Identities=3% Similarity=-0.011 Sum_probs=24.8
Q ss_pred cccCCCCCchhhhhcccC--CCCCCCCCeeecC
Q 039867 14 FNMSSYNSLYAFRMKLTG--LVHFSYEAYRSYL 44 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~w 44 (332)
+-|| .|+++||+.|++ +...|.+.|.|+.
T Consensus 22 l~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~ 52 (56)
T 2yql_A 22 LMCD--TCSRVYHLDCLDPPLKTIPKGMWICPR 52 (56)
T ss_dssp EECS--SSSCEECSSSSSSCCCSCCCSSCCCHH
T ss_pred EEcC--CCCcceECccCCCCcCCCCCCceEChh
Confidence 4688 899999999999 6777889999863
No 11
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.95 E-value=0.00024 Score=52.07 Aligned_cols=29 Identities=3% Similarity=-0.011 Sum_probs=25.3
Q ss_pred cccCCCCCchhhhhcccC--CCCCCCCCeeecC
Q 039867 14 FNMSSYNSLYAFRMKLTG--LVHFSYEAYRSYL 44 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~w 44 (332)
.-|| .|+++||+.|++ +...|.+.|.|+.
T Consensus 18 l~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~ 48 (60)
T 2puy_A 18 LMCD--TCSRVYHLDCLDPPLKTIPKGMWICPR 48 (60)
T ss_dssp EECS--SSSCEECGGGSSSCCSSCCCSCCCCHH
T ss_pred EEcC--CCCcCEECCcCCCCcCCCCCCceEChh
Confidence 5688 899999999999 6777889999985
No 12
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.92 E-value=0.00024 Score=53.25 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.0
Q ss_pred cccCCCCCchhhhhcccC--CCCCCCCCeeec
Q 039867 14 FNMSSYNSLYAFRMKLTG--LVHFSYEAYRSY 43 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~ 43 (332)
+-|| .|+++||+.|++ +...|.+.|.|+
T Consensus 21 l~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~ 50 (66)
T 1xwh_A 21 ICCD--GCPRAFHLACLSPPLREIPSGTWRCS 50 (66)
T ss_dssp EECS--SCCCEECTTTSSSCCSSCCSSCCCCH
T ss_pred EEcC--CCChhhcccccCCCcCcCCCCCeECc
Confidence 4688 699999999999 677778999886
No 13
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=96.89 E-value=0.00029 Score=52.65 Aligned_cols=31 Identities=6% Similarity=-0.072 Sum_probs=28.2
Q ss_pred ecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 13 KFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
-.-||.-+|+ ..||+.|+|++..|.++|.||
T Consensus 24 MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp 55 (62)
T 2g6q_A 24 MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCP 55 (62)
T ss_dssp EEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred eeeeeCCCCCcccEecccCCcCcCCCCCEECc
Confidence 4579999999 999999999998889999987
No 14
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=96.87 E-value=0.00033 Score=53.60 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=27.9
Q ss_pred ecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 13 KFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
-+-||.-+|+ ..||+.|++++..|.++|.||
T Consensus 29 MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp 60 (71)
T 1wen_A 29 MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 60 (71)
T ss_dssp EECCSCSSCSCCCEETTTTTCSSCCSSCCCCT
T ss_pred EeEeeCCCCCCccEecccCCcCcCCCCCEECC
Confidence 4579999999 799999999999889999987
No 15
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.00019 Score=57.26 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=33.0
Q ss_pred eecccCCCCCchhhhhcccC--CCCCCCCCeeecCccccccCCCC
Q 039867 12 IKFNMSSYNSLYAFRMKLTG--LVHFSYEAYRSYLHICFKCDKAP 54 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~wH~C~~C~k~s 54 (332)
.-+-|| .|+++||+.|++ +...|.+.|.||...-..|+++.
T Consensus 30 ~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~~~~ 72 (92)
T 2e6r_A 30 KLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPP 72 (92)
T ss_dssp GCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHSCCS
T ss_pred CEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcCccccCCc
Confidence 456798 699999999999 67778899999877666666553
No 16
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.84 E-value=0.00038 Score=51.50 Aligned_cols=29 Identities=3% Similarity=0.028 Sum_probs=24.5
Q ss_pred cccCCCCCchhhhhcccC--CCCCCCCCeeecC
Q 039867 14 FNMSSYNSLYAFRMKLTG--LVHFSYEAYRSYL 44 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~w 44 (332)
+-|| .|+++||+.|++ +...|.+.|.|+.
T Consensus 22 l~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~ 52 (61)
T 1mm2_A 22 LCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPR 52 (61)
T ss_dssp BCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTT
T ss_pred EEcC--CCCHHHcccccCCCcCcCCCCccCChh
Confidence 5688 599999999999 6777789998864
No 17
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.84 E-value=0.0019 Score=55.03 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-Ccccc-chhhhhhhCCceechHh---HHHHHHhcccC
Q 039867 205 SKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICC-DAKLQALLGRKSVEKRK---LCELLTIHFAE 279 (332)
Q Consensus 205 S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiC-DekLk~LFgk~~V~~~~---m~kLL~~H~~~ 279 (332)
-++|..+|.+.|.. ...+++.+|.-.+-+||-.+.|.||.+ ..|.| ++.|-.|||.+++.+-+ +..+|.+++..
T Consensus 28 k~~lL~iLq~aGA~-~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 28 RAPLLQILKVAGAQ-EEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp CHHHHHHHHHTTCC-CSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheec
Confidence 46899999988875 367999999999999999999999999 99999 46788999999999998 99999999885
Q ss_pred C
Q 039867 280 N 280 (332)
Q Consensus 280 n 280 (332)
-
T Consensus 107 ~ 107 (130)
T 3dac_M 107 L 107 (130)
T ss_dssp C
T ss_pred c
Confidence 3
No 18
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.77 E-value=0.00032 Score=49.58 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=24.7
Q ss_pred ecccCCCCCchhhhhccc--CCCCCCCCCeeecC
Q 039867 13 KFNMSSYNSLYAFRMKLT--GLVHFSYEAYRSYL 44 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~--~~~~~s~~~W~C~w 44 (332)
-.-|| .|+++||+.|+ ++...|.+.|.|+.
T Consensus 15 ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~ 46 (51)
T 1f62_A 15 LILCD--ECNKAFHLFCLRPALYEVPDGEWQCPA 46 (51)
T ss_dssp CEECT--TTCCEECHHHHCTTCCSCCSSCCSCTT
T ss_pred EEECC--CCChhhCcccCCCCcCCCCCCcEECcC
Confidence 45688 79999999999 56777889998863
No 19
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.65 E-value=0.00042 Score=51.24 Aligned_cols=28 Identities=7% Similarity=-0.074 Sum_probs=24.0
Q ss_pred cccCCCCCchhhhhcccCC--CCCCCCCeeec
Q 039867 14 FNMSSYNSLYAFRMKLTGL--VHFSYEAYRSY 43 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~~--~~~s~~~W~C~ 43 (332)
.-|| .|+++||+.|++. ...|.+.|.|+
T Consensus 24 l~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~ 53 (61)
T 2l5u_A 24 ILCD--TCPRAYHMVCLDPDMEKAPEGKWSCP 53 (61)
T ss_dssp EECS--SSSCEEEHHHHCTTCCSCCCSSCCCT
T ss_pred EECC--CCChhhhhhccCCCCCCCCCCceECc
Confidence 4588 7999999999998 55678999886
No 20
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.63 E-value=0.00067 Score=54.57 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=28.0
Q ss_pred ecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 13 KFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
-+-||.-+|+ ..||+.|++++..+.++|.||
T Consensus 49 MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp 80 (91)
T 1weu_A 49 MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 80 (91)
T ss_dssp CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCT
T ss_pred EeEecCCCCCCCCEecccCCcCcCCCCCEECc
Confidence 4579999999 799999999999889999987
No 21
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.61 E-value=0.0033 Score=51.58 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=64.9
Q ss_pred cHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-Cccccc-hhhhhhhCCceechH---hHHHHHHhcccC
Q 039867 205 SKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCD-AKLQALLGRKSVEKR---KLCELLTIHFAE 279 (332)
Q Consensus 205 S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCD-ekLk~LFgk~~V~~~---~m~kLL~~H~~~ 279 (332)
-++|..+|.+.|+. ....++.+|...+-+||-.+.|.||.+ ..|.|. +-|-.|||.+++.+- .+...|.+|+..
T Consensus 19 k~~lL~iLq~aGA~-~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 19 KLPLLKILHAAGAQ-GEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp CHHHHHHHHHTTCC-SSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 46899999998875 367999999999999999999999999 999994 567799999999988 788889888764
No 22
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.52 E-value=0.0008 Score=53.93 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=24.9
Q ss_pred cccCCCCCchhhhhccc--CCCCCCCCCeeecC
Q 039867 14 FNMSSYNSLYAFRMKLT--GLVHFSYEAYRSYL 44 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~--~~~~~s~~~W~C~w 44 (332)
+-|| .|++|||+.|+ .+...|.|.|.|+.
T Consensus 38 L~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~ 68 (88)
T 1fp0_A 38 VMCN--QCEFCFHLDCHLPALQDVPGEEWSCSL 68 (88)
T ss_dssp EECT--TSSCEECTTSSSTTCCCCCSSSCCCCS
T ss_pred EECC--CCCCceecccCCCCCCCCcCCCcCCcc
Confidence 4588 89999999999 77778899999874
No 23
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=96.44 E-value=0.00099 Score=53.47 Aligned_cols=31 Identities=10% Similarity=-0.028 Sum_probs=28.2
Q ss_pred ecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 13 KFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
-+-||.-+|+ ..||+.|+|++..+.+.|.||
T Consensus 39 MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp 70 (90)
T 2jmi_A 39 MVACDNPACPFEWFHYGCVGLKQAPKGKWYCS 70 (90)
T ss_dssp EECCCSSSCSCSCEETTTSSCSSCTTSCCCSS
T ss_pred EEEecCCCCccccCcCccCCCCcCCCCCccCC
Confidence 4679999999 799999999999999999987
No 24
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.43 E-value=0.00062 Score=52.15 Aligned_cols=31 Identities=6% Similarity=-0.054 Sum_probs=26.8
Q ss_pred eecccCCCCCchhhhhcccCCCCCCCCCeeecC
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHFSYEAYRSYL 44 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~s~~~W~C~w 44 (332)
--+-|| .|+.+||+.|++....|.|.|.|+.
T Consensus 32 ~ll~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~ 62 (71)
T 2ku3_A 32 VILFCD--MCNLAVHQECYGVPYIPEGQWLCRH 62 (71)
T ss_dssp CEEECS--SSCCEEEHHHHTCSSCCSSCCCCHH
T ss_pred CEEECC--CCCCccccccCCCCcCCCCCcCCcc
Confidence 345688 8999999999999888899999874
No 25
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.34 E-value=0.0013 Score=50.09 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=26.3
Q ss_pred ceecccCCCCCchhhhhcccC--CCCCCCC-CeeecC
Q 039867 11 HIKFNMSSYNSLYAFRMKLTG--LVHFSYE-AYRSYL 44 (332)
Q Consensus 11 ~~~~~cd~~~C~KayH~~C~~--~~~~s~~-~W~C~w 44 (332)
.--+-|| .|+++||+.|++ +...|.| .|.|+.
T Consensus 31 ~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 65 (70)
T 3asl_A 31 DKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPE 65 (70)
T ss_dssp GGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTT
T ss_pred CCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcC
Confidence 3446788 799999999999 7777778 999875
No 26
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.28 E-value=0.0013 Score=53.20 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=31.0
Q ss_pred ecccCCCCCchhhhhcccC--CCCCCCCCeeecCccccccCCCC
Q 039867 13 KFNMSSYNSLYAFRMKLTG--LVHFSYEAYRSYLHICFKCDKAP 54 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~wH~C~~C~k~s 54 (332)
-+-|| .|+++||+.|++ +...|.+.|.|+ .|..|...+
T Consensus 69 ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~--~C~~c~~g~ 108 (111)
T 2ysm_A 69 MLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCK--NCRICISGP 108 (111)
T ss_dssp EEECS--SSCCEEEGGGSSSCCSSCCSSCCCCH--HHHCCSCSC
T ss_pred eeECC--CCCcHHhHHhcCCccccCCCCCcCCc--CCcCcCCCC
Confidence 46677 799999999998 566678999998 788876544
No 27
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.21 E-value=0.001 Score=52.68 Aligned_cols=31 Identities=6% Similarity=-0.054 Sum_probs=26.8
Q ss_pred eecccCCCCCchhhhhcccCCCCCCCCCeeecC
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHFSYEAYRSYL 44 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~s~~~W~C~w 44 (332)
--+-|| .|+.+||+.|++....|.|.|.|+.
T Consensus 41 ~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~ 71 (88)
T 2l43_A 41 VILFCD--MCNLAVHQECYGVPYIPEGQWLCRH 71 (88)
T ss_dssp EEEECS--SSCCCCCHHHHTCSSCCSSCCCCHH
T ss_pred CEEECC--CCCchhhcccCCCCccCCCceECcc
Confidence 445688 7999999999999888899999974
No 28
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.16 E-value=0.0017 Score=50.43 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=26.2
Q ss_pred ceecccCCCCCchhhhhcccC--CCCCCCC-CeeecC
Q 039867 11 HIKFNMSSYNSLYAFRMKLTG--LVHFSYE-AYRSYL 44 (332)
Q Consensus 11 ~~~~~cd~~~C~KayH~~C~~--~~~~s~~-~W~C~w 44 (332)
.--+-|| .|+++||+.|++ +...|.| .|.||.
T Consensus 39 ~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 39 NMQLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp TTEEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred CCEEEcC--CCCccccccccCCCccCCCCCCCcCCcC
Confidence 3455688 899999999999 6777778 999874
No 29
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.92 E-value=0.002 Score=48.69 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=23.7
Q ss_pred cccCCCCCchhhhhcccC--CCCCCCCCeeecC
Q 039867 14 FNMSSYNSLYAFRMKLTG--LVHFSYEAYRSYL 44 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~w 44 (332)
+-|| .|+++||+.|++ +...|.+.|.|+.
T Consensus 25 l~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~ 55 (66)
T 2lri_C 25 LRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRS 55 (66)
T ss_dssp EECS--SSCCEECHHHHCTTTCCCCSSSCCCTT
T ss_pred EECC--CCCCceecccCCCccCcCCCCCEECcc
Confidence 4587 599999999995 5677789998864
No 30
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=95.87 E-value=0.01 Score=50.02 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=61.3
Q ss_pred cHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-Cccccc-hhhhhhhCCceechHhHHHHHHhccc
Q 039867 205 SKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCD-AKLQALLGRKSVEKRKLCELLTIHFA 278 (332)
Q Consensus 205 S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCD-ekLk~LFgk~~V~~~~m~kLL~~H~~ 278 (332)
.++|..||...|..- ...+.-+|+-.+-+||=.+.|.||.+ +.|.|. +.|-.|||..++.+-+-..+...|..
T Consensus 31 k~~LLkiLq~aGA~~-~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~ 105 (119)
T 1z1m_A 31 KPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYR 105 (119)
T ss_dssp STTSHHHHHHHTCCC-SCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSC
T ss_pred cHHHHHHHHHhcccc-ceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 457888898888753 67999999999999999999999999 999995 55689999999998876666665544
No 31
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.87 E-value=0.016 Score=48.08 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-Cccccc-hhhhhhhCCceechHhHHHHHHhc
Q 039867 205 SKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCD-AKLQALLGRKSVEKRKLCELLTIH 276 (332)
Q Consensus 205 S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCD-ekLk~LFgk~~V~~~~m~kLL~~H 276 (332)
.++|..+|..+|..- ...+.-+|+-.|-+||-.+.|.||.+ ..|.|. +.|-.|||..++++-+-..+...|
T Consensus 15 k~~LLklL~~~GA~~-~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 87 (107)
T 1ycq_A 15 TPLLLSLLKSAGAQK-ETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMI 87 (107)
T ss_dssp CHHHHHHHHHTTCCC-SCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHH
T ss_pred cHHHHHHHHHhcccc-ceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 568999999888753 67999999999999999999999999 999995 556899999999988766444443
No 32
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=95.66 E-value=0.0037 Score=48.63 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=24.8
Q ss_pred ecccCCCCCchhhhhcccC--CCCCCCCC-eeecC
Q 039867 13 KFNMSSYNSLYAFRMKLTG--LVHFSYEA-YRSYL 44 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~~--~~~~s~~~-W~C~w 44 (332)
-+-|| .|++|||+.|++ +...|.+. |.|+.
T Consensus 41 ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~ 73 (77)
T 3shb_A 41 QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPE 73 (77)
T ss_dssp EEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTT
T ss_pred eeEeC--CCCCccCcccCCCcccCCCCCCceECcC
Confidence 45688 699999999999 67777777 99974
No 33
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.63 E-value=0.019 Score=49.33 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-Cccccc-hhhhhhhCCceechHhH---HHHHHhcccC
Q 039867 205 SKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCD-AKLQALLGRKSVEKRKL---CELLTIHFAE 279 (332)
Q Consensus 205 S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCD-ekLk~LFgk~~V~~~~m---~kLL~~H~~~ 279 (332)
-++|..||...|.. ...++.-+|+-.|-+||-.+.|.||.+ ..|.|. +.|-.|||..++.+-+. .++|.+-++.
T Consensus 27 k~~LLkiLq~aGA~-~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~NLv~ 105 (140)
T 2z5s_M 27 RAPLLQILKVAGAQ-EEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRNLVI 105 (140)
T ss_dssp CHHHHHHHHHTTCC-CSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhCcc-cceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhccc
Confidence 36899999988874 457999999999999999999999999 999995 55689999999988764 4666666654
Q ss_pred CC
Q 039867 280 NL 281 (332)
Q Consensus 280 n~ 281 (332)
-.
T Consensus 106 ~~ 107 (140)
T 2z5s_M 106 LN 107 (140)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 34
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=95.57 E-value=0.0034 Score=51.44 Aligned_cols=30 Identities=3% Similarity=-0.050 Sum_probs=25.8
Q ss_pred eecccCCCCCchhhhhcccC--CCCCCCCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTG--LVHFSYEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~--~~~~s~~~W~C~ 43 (332)
.-+-|| .|+++||+.|++ +...|.|.|.|+
T Consensus 72 ~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~ 103 (114)
T 2kwj_A 72 QLLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCH 103 (114)
T ss_dssp TEEECS--SSCCEEETTTSSSCCSSCCSSCCCCH
T ss_pred ceEEcC--CCCccccccccCCCccCCCCCCeECc
Confidence 346788 799999999999 677788999998
No 35
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=95.56 E-value=0.0036 Score=46.19 Aligned_cols=32 Identities=6% Similarity=-0.214 Sum_probs=25.6
Q ss_pred ceecccCCCCCchhhhhcccCCCC-----CCCCCeeecC
Q 039867 11 HIKFNMSSYNSLYAFRMKLTGLVH-----FSYEAYRSYL 44 (332)
Q Consensus 11 ~~~~~cd~~~C~KayH~~C~~~~~-----~s~~~W~C~w 44 (332)
.--+-|| .|+++||+.|++... +|.+.|.|+.
T Consensus 21 ~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~ 57 (66)
T 2yt5_A 21 NEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQ 57 (66)
T ss_dssp BCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHH
T ss_pred CCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCC
Confidence 4556788 899999999999744 2789999863
No 36
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.0035 Score=47.73 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=28.3
Q ss_pred eecccCCCCCc-hhhhhcccCCCCCCCCCeeec
Q 039867 12 IKFNMSSYNSL-YAFRMKLTGLVHFSYEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~-KayH~~C~~~~~~s~~~W~C~ 43 (332)
.-+.||.-+|| ..||+.|+++...+.+.|.||
T Consensus 18 ~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp 50 (70)
T 1x4i_A 18 EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCP 50 (70)
T ss_dssp SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCH
T ss_pred CEeEeCCCCCCccCCcccccccCcCCCCCEECC
Confidence 45679999997 699999999998889999986
No 37
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=95.40 E-value=0.005 Score=53.73 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=23.7
Q ss_pred cccCCCCCchhhhhccc--CCCCCCCCCeeecC
Q 039867 14 FNMSSYNSLYAFRMKLT--GLVHFSYEAYRSYL 44 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~--~~~~~s~~~W~C~w 44 (332)
+-||. |+++||+.|+ .+...|.|.|.||.
T Consensus 17 l~Cd~--C~~~~H~~C~~p~l~~~p~~~W~C~~ 47 (184)
T 3o36_A 17 LCCEK--CPKVFHLSCHVPTLTNFPSGEWICTF 47 (184)
T ss_dssp EECSS--SSCEECTTTSSSCCSSCCSSCCCCTT
T ss_pred eecCC--CCcccCccccCCCCCCCCCCCEECcc
Confidence 46885 9999999999 45666789999973
No 38
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=95.26 E-value=0.0063 Score=49.59 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=25.3
Q ss_pred eecccCCCCCchhhhhccc--CCCCCCCCCeeecC
Q 039867 12 IKFNMSSYNSLYAFRMKLT--GLVHFSYEAYRSYL 44 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~--~~~~~s~~~W~C~w 44 (332)
--+-||. |+++||+.|+ .+...|.+.|.|+.
T Consensus 76 ~ll~Cd~--C~~~yH~~Cl~p~l~~~P~~~W~C~~ 108 (112)
T 3v43_A 76 NMLFCDS--CDRGFHMECCDPPLTRMPKGMWICQI 108 (112)
T ss_dssp CCEECTT--TCCEECGGGCSSCCSSCCSSCCCCTT
T ss_pred ceEEcCC--CCCeeecccCCCCCCCCCCCCeECCC
Confidence 3456776 9999999999 56778889999874
No 39
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=95.19 E-value=0.0062 Score=53.96 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=24.1
Q ss_pred ecccCCCCCchhhhhccc--CCCCCCCCCeeecC
Q 039867 13 KFNMSSYNSLYAFRMKLT--GLVHFSYEAYRSYL 44 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~--~~~~~s~~~W~C~w 44 (332)
-.-|| .|+++||+.|+ ++...|.|.|.|+.
T Consensus 14 ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~ 45 (189)
T 2ro1_A 14 LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSL 45 (189)
T ss_dssp CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTT
T ss_pred eeECC--CCCchhccccCCCCcccCCCCCCCCcC
Confidence 34588 69999999999 56777889998754
No 40
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=95.16 E-value=0.0065 Score=54.13 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.0
Q ss_pred ecccCCCCCchhhhhccc--CCCCCCCCCeeecCccccccCC
Q 039867 13 KFNMSSYNSLYAFRMKLT--GLVHFSYEAYRSYLHICFKCDK 52 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~--~~~~~s~~~W~C~wH~C~~C~k 52 (332)
-.-||. |+++||+.|+ ++...|.|.|.||. |..-++
T Consensus 19 ll~Cd~--C~~~~H~~Cl~p~l~~~p~~~W~C~~--C~~~~~ 56 (207)
T 3u5n_A 19 LLCCEK--CPKVFHLTCHVPTLLSFPSGDWICTF--CRDIGK 56 (207)
T ss_dssp EEECSS--SSCEECTTTSSSCCSSCCSSCCCCTT--TSCSSS
T ss_pred eEEcCC--CCCccCCccCCCCCCCCCCCCEEeCc--eeCccc
Confidence 356886 9999999999 55667889999983 444433
No 41
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.08 E-value=0.0056 Score=46.32 Aligned_cols=29 Identities=3% Similarity=-0.050 Sum_probs=23.7
Q ss_pred ecccCCCCCchhhhhcccCCCCCC--CCCeeec
Q 039867 13 KFNMSSYNSLYAFRMKLTGLVHFS--YEAYRSY 43 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~~~~~~s--~~~W~C~ 43 (332)
-+-|| .|...||+.|+++...+ .+.|.||
T Consensus 33 mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 33 MIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp EEECS--SSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred EEEcC--CCCcccccccCCCCccCCCCCCEECh
Confidence 46799 59999999999996654 4789886
No 42
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.64 E-value=0.011 Score=46.62 Aligned_cols=33 Identities=0% Similarity=-0.213 Sum_probs=26.4
Q ss_pred ceecccCCCCCchhhhhcccCCCC------CCCCCeeecCc
Q 039867 11 HIKFNMSSYNSLYAFRMKLTGLVH------FSYEAYRSYLH 45 (332)
Q Consensus 11 ~~~~~cd~~~C~KayH~~C~~~~~------~s~~~W~C~wH 45 (332)
..-+-|| .|+.|||+.|++-.+ .+.+.|.|+..
T Consensus 31 ~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C 69 (88)
T 1wev_A 31 NQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69 (88)
T ss_dssp CCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHH
T ss_pred CceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccc
Confidence 4456799 499999999999754 57899998753
No 43
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=94.61 E-value=0.036 Score=46.42 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=59.8
Q ss_pred cHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCCCCCC-Cccccc-hhhhhhhCCceechHhHHHHHHhc
Q 039867 205 SKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLFHPDK-KEICCD-AKLQALLGRKSVEKRKLCELLTIH 276 (332)
Q Consensus 205 S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLqDP~~-r~IiCD-ekLk~LFgk~~V~~~~m~kLL~~H 276 (332)
.++|..+|..+|..- ...+.-+|+-.+-+||-.+.|.||.+ ..|.|. +.|-.|||.+++.+-+-..+...+
T Consensus 15 k~~LLklLq~~GA~~-~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 87 (115)
T 2axi_A 15 KPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI 87 (115)
T ss_dssp CHHHHHHHHHTTCCC-SCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHH
T ss_pred cHHHHHHHHHhcccc-ceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 578999999888753 67999999999999999999999999 999995 556899999999887655444443
No 44
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=93.50 E-value=0.026 Score=43.79 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=42.8
Q ss_pred CCCeeecCccccccCCCC----ccceecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 37 YEAYRSYLHICFKCDKAP----KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 37 ~~~W~C~wH~C~~C~k~s----~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
++.|.|+.=.|.+|++.. ...|..|+.+|+..|+.........+..-||..|.+
T Consensus 19 ~~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 19 DVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 488999999999999874 566999999999999997655443444488988853
No 45
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=93.18 E-value=0.012 Score=50.69 Aligned_cols=28 Identities=14% Similarity=-0.070 Sum_probs=22.5
Q ss_pred cccCCCCCchhhhhcccCCCC---------CCCCCeeec
Q 039867 14 FNMSSYNSLYAFRMKLTGLVH---------FSYEAYRSY 43 (332)
Q Consensus 14 ~~cd~~~C~KayH~~C~~~~~---------~s~~~W~C~ 43 (332)
+-|| .||++||+.|+...+ .+.+.|.|+
T Consensus 76 lcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~ 112 (142)
T 2lbm_A 76 ICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCY 112 (142)
T ss_dssp EECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCT
T ss_pred EeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEee
Confidence 4577 899999999998533 478999975
No 46
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.83 E-value=0.041 Score=42.56 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=43.8
Q ss_pred hhcccCCCCCCCCCeeecCccccccCC----CCccceecCCCCCccccccCceeEEeeCC-cccchhhh
Q 039867 26 RMKLTGLVHFSYEAYRSYLHICFKCDK----APKFYCLCCPSAICGPCLYEAEFAVVKGD-KGLCDECL 89 (332)
Q Consensus 26 H~~C~~~~~~s~~~W~C~wH~C~~C~k----~s~~~C~~CP~S~Ck~C~~~a~f~~vr~~-kGfC~~C~ 89 (332)
++.|..-.. ...|.|.--.|.+|++ .....|..|+.+|+..|+....-. |..+ .=||..|.
T Consensus 10 ~~~c~~C~~--~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 10 DTECDLCGG--DPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDK-VPEEEYWYCPSCK 75 (77)
T ss_dssp CCCCTTTCS--CSSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSS-CCCSSCCCCTTTC
T ss_pred CccChhhcC--CCCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccC-CCCCCCcCCcCcc
Confidence 344444333 3689999999999995 346669999999999999964322 3333 67999885
No 47
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=92.15 E-value=0.064 Score=49.48 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=39.7
Q ss_pred CCCCeeecCccccccCC----CCccceecCCCCCccccccCceeEEeeCC-cccchhhhh
Q 039867 36 SYEAYRSYLHICFKCDK----APKFYCLCCPSAICGPCLYEAEFAVVKGD-KGLCDECLE 90 (332)
Q Consensus 36 s~~~W~C~wH~C~~C~k----~s~~~C~~CP~S~Ck~C~~~a~f~~vr~~-kGfC~~C~~ 90 (332)
..+.|.|.--.|.+|++ .....|..|+.+|+..|+....- .+..+ .=||..|..
T Consensus 166 ~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~-~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 166 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRN 224 (226)
T ss_dssp TCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCC-SCCSSSCCCCGGGC-
T ss_pred CCcCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcc-cCCCCCCCCCcCCcC
Confidence 45689999999999996 35667999999999999996432 23344 679999964
No 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.00 E-value=0.081 Score=41.99 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=44.9
Q ss_pred CCCCCeeecCc-cccccCCCC----ccceecCCCCCccccccCceeEEeeCCcccchhhhhhh
Q 039867 35 FSYEAYRSYLH-ICFKCDKAP----KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELV 92 (332)
Q Consensus 35 ~s~~~W~C~wH-~C~~C~k~s----~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~ 92 (332)
+....|.|.-. .|.+|+... ...|..|+.+|+..|+....- .|..+.-||..|..-.
T Consensus 6 ~~~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 6 SGHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHHHHH
T ss_pred CCCchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCcCcc
Confidence 34567888876 699999886 666999999999999986433 3456789999997653
No 49
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=91.75 E-value=0.048 Score=41.28 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=40.6
Q ss_pred CCCeeecCccccccCCC----CccceecCCCCCccccccCceeEEeeCC-cccchhhhh
Q 039867 37 YEAYRSYLHICFKCDKA----PKFYCLCCPSAICGPCLYEAEFAVVKGD-KGLCDECLE 90 (332)
Q Consensus 37 ~~~W~C~wH~C~~C~k~----s~~~C~~CP~S~Ck~C~~~a~f~~vr~~-kGfC~~C~~ 90 (332)
...|.|+.=.|.+|++. ....|..|+.+|+..|+....- .|..+ .=||..|..
T Consensus 11 ~~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 11 DVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRN 68 (70)
T ss_dssp CTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCS-SCCSSSCCCCTTTSC
T ss_pred CCCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcC-CCCCCCCcCCcCccC
Confidence 46899998899999963 4556999999999999996432 23333 679998863
No 50
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.33 E-value=0.056 Score=43.18 Aligned_cols=60 Identities=27% Similarity=0.309 Sum_probs=42.6
Q ss_pred CCCeeecC-ccccccCCCCcc-ceecCCCCCccccccCceeEEeeCCcccchhhhhhhhhhcc
Q 039867 37 YEAYRSYL-HICFKCDKAPKF-YCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELVLRKEE 97 (332)
Q Consensus 37 ~~~W~C~w-H~C~~C~k~s~~-~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~~lIE~ 97 (332)
...|.... -.|.+|++.... .|..||.+|...|+....- .|..+.-+|..|...--+-|.
T Consensus 17 ~~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~-~~P~g~W~C~~C~~~~~~ke~ 78 (88)
T 1fp0_A 17 EFGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLPDLKEE 78 (88)
T ss_dssp CCCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCC-CCCSSSCCCCSCCCCCSSCCS
T ss_pred cccccCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCC-CCcCCCcCCccccCCCccchh
Confidence 33444332 379999877644 4999999999999987543 446678999999876444443
No 51
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.12 E-value=0.12 Score=37.58 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=36.7
Q ss_pred ccccccCCCCccc-eecCCCCCccccccCceeEEeeCCcccchhhhhhhh
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELVL 93 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~~ 93 (332)
-.|.+|++..... |..||.+|+..|+....- .+..+.-||..|..-..
T Consensus 6 ~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCCSSCEECSSSSCEECGGGSSSCCS-SCCCSCCCCHHHHHHHH
T ss_pred CCCcCCCCCCcEEEcCCCCcCEECCcCCCCcC-CCCCCceEChhccChhh
Confidence 3689998776544 999999999999996432 34567899999977544
No 52
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.51 E-value=0.11 Score=38.53 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=34.4
Q ss_pred ccccccCCCCccc-eecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
..|.+|+...... |..||.+|+..|+....- .|..+.-||..|..
T Consensus 9 ~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~-~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 9 DECAVCRDGGELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSBSSSSCCSSCEECSSCCCEECTTTSSSCCS-SCCSSCCCCHHHHH
T ss_pred CCCccCCCCCCEEEcCCCChhhcccccCCCcC-cCCCCCeECccccC
Confidence 4688998766444 999999999999995322 33557889999964
No 53
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.49 E-value=0.091 Score=42.02 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=21.8
Q ss_pred eecccCCCCCchhhhhcccCCCCC-CCCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHF-SYEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~-s~~~W~C~ 43 (332)
.-+-|| .|...||+.|+++... ..+.|.||
T Consensus 41 ~mi~Cd--~C~~w~H~~C~~~~~~~~p~~w~C~ 71 (98)
T 2lv9_A 41 YMICCD--KCSVWQHIDCMGIDRQHIPDTYLCE 71 (98)
T ss_dssp CEEEBT--TTCBEEETTTTTCCTTSCCSSBCCT
T ss_pred cEEEcC--CCCCcCcCcCCCCCccCCCCCEECC
Confidence 456798 4999999999999533 23566654
No 54
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.45 E-value=0.11 Score=37.34 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=34.0
Q ss_pred ccccccCCCCccc-eecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
..|.+|++..... |..||.+|+..|+....- .+..+.-||..|.+
T Consensus 10 ~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~-~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCSSCCEECSSSSCEECSSSSSSCCC-SCCCSSCCCHHHHC
T ss_pred CCCccCCCCCeEEEcCCCCcceECccCCCCcC-CCCCCceEChhhhC
Confidence 3589998776544 999999999999996322 24557889998853
No 55
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.43 E-value=0.15 Score=37.37 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=34.8
Q ss_pred ccccccCCCCcc-ceecCCCCCccccccCceeEEeeCCcccchhhhhh
Q 039867 45 HICFKCDKAPKF-YCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 45 H~C~~C~k~s~~-~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
-.|.+|+..... .|..|+.+|+..|+.... ..|..+.-+|..|..-
T Consensus 10 ~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl-~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDGGELLCCDTCPSSYHIHCLNPPL-PEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCCSSCBCCSSSCCCBCSSSSSSCC-SSCCSSCCCCTTTTTT
T ss_pred CcCCCCCCCCCEEEcCCCCHHHcccccCCCc-CcCCCCccCChhhcCc
Confidence 358999876544 499999999999999643 2345678899999653
No 56
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.25 E-value=0.085 Score=41.48 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=42.8
Q ss_pred ccccccCCC------CccceecCCCCCccccccCceeE---EeeCCcccchhhhhhhhhhcccc
Q 039867 45 HICFKCDKA------PKFYCLCCPSAICGPCLYEAEFA---VVKGDKGLCDECLELVLRKEEKK 99 (332)
Q Consensus 45 H~C~~C~k~------s~~~C~~CP~S~Ck~C~~~a~f~---~vr~~kGfC~~C~~~~~lIE~~~ 99 (332)
-.|.+|++. ...+|..|+.+|+..|+....-. .|..+.-||..|......++...
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~ 80 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKN 80 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcccc
Confidence 469999866 46779999999999999976543 46778899999988765555443
No 57
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.34 E-value=0.12 Score=44.91 Aligned_cols=46 Identities=20% Similarity=0.488 Sum_probs=35.9
Q ss_pred ccccccCCCCccc-eecCCCCCccccccCceeEEeeCCcccchhhhhh
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
..|.+|++++... |..||.+|+..|+....- .+..+.-+|..|...
T Consensus 5 ~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~-~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 5 DWCAVCQNGGELLCCEKCPKVFHLSCHVPTLT-NFPSGEWICTFCRDL 51 (184)
T ss_dssp SSCTTTCCCSSCEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCS
T ss_pred CccccCCCCCeeeecCCCCcccCccccCCCCC-CCCCCCEECccccCc
Confidence 4599998776554 999999999999986443 335667999999865
No 58
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.84 E-value=0.12 Score=38.80 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=34.6
Q ss_pred ccccccCCCCccc-eecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
-.|.+|++..... |..|+.+|+..|+....- .|..+.-||..|..
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~-~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT-SRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEECHHHHCTTTC-CCCSSSCCCTTTTT
T ss_pred CCcCCCCCCCeEEECCCCCCceecccCCCccC-cCCCCCEECccccC
Confidence 3599998776544 999999999999985433 34567789999953
No 59
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.79 E-value=0.14 Score=37.59 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=35.3
Q ss_pred ccccccCCCCccc-eecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
-.|.+|+...... |..||.+|+..|+.... ..+..+.-+|..|.+
T Consensus 12 ~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l-~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 12 DYCEVCQQGGEIILCDTCPRAYHMVCLDPDM-EKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCTTTSCCSSEEECSSSSCEEEHHHHCTTC-CSCCCSSCCCTTGGG
T ss_pred CCCccCCCCCcEEECCCCChhhhhhccCCCC-CCCCCCceECccccc
Confidence 4689998776544 99999999999999742 234567899999965
No 60
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=88.46 E-value=0.2 Score=44.23 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=36.2
Q ss_pred ccccccCCCCcc-ceecCCCCCccccccCceeEEeeCCcccchhhhhh
Q 039867 45 HICFKCDKAPKF-YCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 45 H~C~~C~k~s~~-~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
..|.+|++++.. .|..||.+|+..|+....- .+..+.-+|..|...
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS-SCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcc-cCCCCCCCCcCccCC
Confidence 469999877644 4999999999999986433 345677899999865
No 61
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.22 E-value=0.17 Score=39.84 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=36.5
Q ss_pred ccccccCCC------CccceecCCCCCccccccCceeEEeeCCcccchhhhhh
Q 039867 45 HICFKCDKA------PKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 45 H~C~~C~k~------s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
..|.+|+.. ....|..|+.+|...|+.-.. |..+.-||..|..-
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 568999987 466699999999999999753 56789999999754
No 62
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.36 E-value=0.17 Score=44.96 Aligned_cols=46 Identities=17% Similarity=0.503 Sum_probs=35.7
Q ss_pred ccccccCCCCcc-ceecCCCCCccccccCceeEEeeCCcccchhhhhh
Q 039867 45 HICFKCDKAPKF-YCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 45 H~C~~C~k~s~~-~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
..|.+|++++.. .|..||.+|+..|+....- .+..+.-+|..|...
T Consensus 8 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCEEEEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCceEEcCCCCCccCCccCCCCCC-CCCCCCEEeCceeCc
Confidence 459999988654 4999999999999985432 345677899999864
No 63
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=86.93 E-value=0.094 Score=44.55 Aligned_cols=27 Identities=15% Similarity=-0.078 Sum_probs=21.2
Q ss_pred ccCCCCCchhhhhcccCCC---------CCCCCCeeec
Q 039867 15 NMSSYNSLYAFRMKLTGLV---------HFSYEAYRSY 43 (332)
Q Consensus 15 ~cd~~~C~KayH~~C~~~~---------~~s~~~W~C~ 43 (332)
-|| .||+|||..|+... ..+.+.|.|+
T Consensus 71 cCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~ 106 (129)
T 3ql9_A 71 CCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCY 106 (129)
T ss_dssp ECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCT
T ss_pred ecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcC
Confidence 466 89999999998742 3478999885
No 64
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.76 E-value=0.18 Score=35.19 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=33.9
Q ss_pred cccccCCCC----ccceecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 46 ICFKCDKAP----KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 46 ~C~~C~k~s----~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
.|.+|++.. ...|..|+.+|+..|+.... ..|..+.-||..|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l-~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL-YEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC-CSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCc-CCCCCCcEECcCccc
Confidence 488998765 56699999999999998532 234556889999864
No 65
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.71 E-value=0.17 Score=38.65 Aligned_cols=32 Identities=6% Similarity=-0.139 Sum_probs=25.8
Q ss_pred eecccCCCCCchhhhhcccCCCCCCC-------CCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHFSY-------EAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~s~-------~~W~C~ 43 (332)
.-+.||...|..-||..|+|++..+. .+|.|+
T Consensus 29 ~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 29 SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 45679988999999999999977653 577775
No 66
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.45 E-value=0.23 Score=37.75 Aligned_cols=43 Identities=23% Similarity=0.579 Sum_probs=35.3
Q ss_pred ccccccCCC------CccceecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKA------PKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~------s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
-.|.+|++. ....|..|+.+|...|+.-.. |..+.-||..|..
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 358999876 466699999999999999753 5667899999964
No 67
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=86.15 E-value=0.086 Score=45.20 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=23.3
Q ss_pred eecccCCCCCchhhhhcccCCCCC---CCCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHF---SYEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~---s~~~W~C~ 43 (332)
--.-|| .|+..||..|+|+... ..+.|.||
T Consensus 22 ~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~ 54 (174)
T 2ri7_A 22 FYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCP 54 (174)
T ss_dssp CEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCH
T ss_pred CEeECC--CCCchhChhhcCCchhhccCccCeecC
Confidence 356799 7999999999999543 35778775
No 68
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.53 E-value=0.23 Score=36.18 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=24.4
Q ss_pred cceecccCCCCCchhhhhcccCCCCCC---CCCeeec
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGLVHFS---YEAYRSY 43 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~~~~s---~~~W~C~ 43 (332)
...-+.|| .|..=||..|+|++..+ .+.|+|+
T Consensus 19 ~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 53 (64)
T 1we9_A 19 DEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCP 53 (64)
T ss_dssp SSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCH
T ss_pred CCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECC
Confidence 44567899 79999999999997654 3566664
No 69
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=85.38 E-value=0.28 Score=36.52 Aligned_cols=32 Identities=0% Similarity=-0.193 Sum_probs=24.9
Q ss_pred eecccCCCCCchhhhhcccCCCCCCC------CCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHFSY------EAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~s~------~~W~C~ 43 (332)
.-+.||...|..-||..|+|+...+. ++|.||
T Consensus 23 ~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 23 SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 35679988899999999999966553 357764
No 70
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.50 E-value=0.15 Score=36.09 Aligned_cols=34 Identities=12% Similarity=-0.082 Sum_probs=26.9
Q ss_pred cceecccCCCCCchhhhhcccCCCCCC--CCCeeecC
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGLVHFS--YEAYRSYL 44 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~~~~s--~~~W~C~w 44 (332)
.+.-..||. .|..=||..|+|++..+ .++|.||.
T Consensus 15 ~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~ 50 (52)
T 2kgg_A 15 KVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICIN 50 (52)
T ss_dssp TCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSC
T ss_pred CCcEEEeCC-CCCccCcccccCCCccccCCCCEECCC
Confidence 455667998 99999999999996553 37888874
No 71
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.23 E-value=0.24 Score=42.60 Aligned_cols=46 Identities=20% Similarity=0.527 Sum_probs=33.0
Q ss_pred CccccccCCCCccc-eecCCCCCccccccCce----eEE--eeCCcccchhhh
Q 039867 44 LHICFKCDKAPKFY-CLCCPSAICGPCLYEAE----FAV--VKGDKGLCDECL 89 (332)
Q Consensus 44 wH~C~~C~k~s~~~-C~~CP~S~Ck~C~~~a~----f~~--vr~~kGfC~~C~ 89 (332)
-.+|.+|+...... |..||.+||..|+.... ... +..+.-.|..|.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 46899998887555 89999999999998422 222 234566777774
No 72
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.98 E-value=0.21 Score=37.31 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=27.2
Q ss_pred ccceecccCCCCCchhhhhcccCCCC--------CCCCCeeec
Q 039867 9 PQHIKFNMSSYNSLYAFRMKLTGLVH--------FSYEAYRSY 43 (332)
Q Consensus 9 ~~~~~~~cd~~~C~KayH~~C~~~~~--------~s~~~W~C~ 43 (332)
|...-..||. .|.+=||..|+|++. .+.+.|.||
T Consensus 20 ~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~ 61 (65)
T 2vpb_A 20 DDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCD 61 (65)
T ss_dssp TTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCH
T ss_pred CCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECc
Confidence 3445567995 999999999999965 466799996
No 73
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=83.71 E-value=0.32 Score=39.37 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=26.0
Q ss_pred cceecccCCCCCchhhhhcccCCCC--------CCCCCeeec
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGLVH--------FSYEAYRSY 43 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~~~--------~s~~~W~C~ 43 (332)
..--..|| -.|..=||..|+|++. .+.+.|.||
T Consensus 16 ~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 16 DQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp TSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred CCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 33455688 5899999999999975 566889886
No 74
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.47 E-value=0.45 Score=35.88 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=39.0
Q ss_pred CCeeecCccccccCCC-----CccceecCCCCCccccccCceeEEee---CCcccchhhhhhhhhh
Q 039867 38 EAYRSYLHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVK---GDKGLCDECLELVLRK 95 (332)
Q Consensus 38 ~~W~C~wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr---~~kGfC~~C~~~~~lI 95 (332)
..|. |-..|.+|++. ...+|..|...||..|.....-.+-. ...-.|..|...+-.|
T Consensus 6 p~W~-~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 6 ADWI-DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp -CCC-CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHH
T ss_pred CcCc-cCCcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHHH
Confidence 4566 45789999886 45679999999999998753222111 1246799998876544
No 75
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=82.05 E-value=0.43 Score=35.84 Aligned_cols=30 Identities=3% Similarity=-0.075 Sum_probs=22.7
Q ss_pred eecccCCCCCchhhhhcccCCCCC-CCCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHF-SYEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~-s~~~W~C~ 43 (332)
.-+.||. |..-||..|+|+... ..+.|.|+
T Consensus 32 ~MIqCd~--C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 32 PMIECNE--CHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp CEEECTT--TCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CEEECCC--CCccccccccCcCcccCCCcEECC
Confidence 4567996 999999999999663 34566654
No 76
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=81.86 E-value=0.33 Score=34.30 Aligned_cols=30 Identities=3% Similarity=-0.054 Sum_probs=22.8
Q ss_pred eecccCCCCCchhhhhcccCCCCCC-CCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHFS-YEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~s-~~~W~C~ 43 (332)
.-+.||. |..-||..|+|+...+ .+.|.||
T Consensus 17 ~MI~Cd~--C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 17 PMIECNE--CHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp CEEECTT--TCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CEEEcCC--CCccccccccCCCcccCCCcEECc
Confidence 5567995 9999999999996642 4666664
No 77
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=81.53 E-value=0.33 Score=41.18 Aligned_cols=28 Identities=25% Similarity=0.745 Sum_probs=23.9
Q ss_pred ccccccCCCCccc-eecCCCCCccccccC
Q 039867 45 HICFKCDKAPKFY-CLCCPSAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~k~s~~~-C~~CP~S~Ck~C~~~ 72 (332)
.+|.+|+.+.... |..||.+||..|+..
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~ 86 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNAFCKKCILR 86 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCEEEHHHHHH
T ss_pred CcCeecCCCCeeEecCCCchhhhHHHhCC
Confidence 4699998887655 899999999999984
No 78
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.95 E-value=0.48 Score=34.58 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=35.5
Q ss_pred CccccccCCC------CccceecCCCCCccccccCceeEE-e-eCCcccchhhhh
Q 039867 44 LHICFKCDKA------PKFYCLCCPSAICGPCLYEAEFAV-V-KGDKGLCDECLE 90 (332)
Q Consensus 44 wH~C~~C~k~------s~~~C~~CP~S~Ck~C~~~a~f~~-v-r~~kGfC~~C~~ 90 (332)
-..|.+|+.. ....|..|+.+|+..|+....-.. + ..+.-||..|..
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 3579999875 355699999999999999743221 2 567889999965
No 79
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.11 E-value=0.2 Score=37.84 Aligned_cols=30 Identities=13% Similarity=0.011 Sum_probs=24.3
Q ss_pred eecccCCCCCchhhhhcccCCCCCC-------CCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHFS-------YEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~s-------~~~W~C~ 43 (332)
.-+.|| .|..-||..|+|++..+ .+.|+|+
T Consensus 29 ~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 29 FMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp CEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 456799 59999999999996543 5788886
No 80
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.28 E-value=0.61 Score=34.92 Aligned_cols=30 Identities=3% Similarity=-0.018 Sum_probs=23.2
Q ss_pred eecccCCCCCchhhhhcccCCCCC--CCCCeeec
Q 039867 12 IKFNMSSYNSLYAFRMKLTGLVHF--SYEAYRSY 43 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~~~~~~--s~~~W~C~ 43 (332)
.-+.|| .|..-||..|+++... ..+.|.|+
T Consensus 30 ~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 30 RMLACD--GCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp CEEECS--SSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred cEEECC--CCCCccCCeeeccCccccCCCcEECC
Confidence 467899 5999999999999653 34667665
No 81
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=78.40 E-value=0.72 Score=41.62 Aligned_cols=55 Identities=20% Similarity=0.515 Sum_probs=39.9
Q ss_pred CCCeeecCccccccCCC-----CccceecCCCCCccccccCceeEEe---eCCcccchhhhhhh
Q 039867 37 YEAYRSYLHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVV---KGDKGLCDECLELV 92 (332)
Q Consensus 37 ~~~W~C~wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~v---r~~kGfC~~C~~~~ 92 (332)
...|. +-..|..|+.. ...+|+.|+..||..|.......+- ....-.|..|+..+
T Consensus 158 ~p~W~-~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 158 APDWV-DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCCCC-CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred ccccc-cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 34687 66799999876 4677999999999999986433221 11245899998864
No 82
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=77.21 E-value=0.5 Score=35.70 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=24.1
Q ss_pred ceecccCCCCCchhhhhcccCCCCCCC---CCeeec
Q 039867 11 HIKFNMSSYNSLYAFRMKLTGLVHFSY---EAYRSY 43 (332)
Q Consensus 11 ~~~~~cd~~~C~KayH~~C~~~~~~s~---~~W~C~ 43 (332)
..-+.|| .|..-||..|+|++..+. +.|.|+
T Consensus 23 ~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 23 RFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp SCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCEEEcC--CCCCCEecccccccccccCCCCEEECC
Confidence 3567899 499999999999976543 567775
No 83
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=76.57 E-value=0.98 Score=36.98 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=30.9
Q ss_pred CccccccCCCCccc-ee--cCCCCCccccccCceeEEeeCCcccchhhh
Q 039867 44 LHICFKCDKAPKFY-CL--CCPSAICGPCLYEAEFAVVKGDKGLCDECL 89 (332)
Q Consensus 44 wH~C~~C~k~s~~~-C~--~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~ 89 (332)
-.+|++|+..+... |. .||.+|+..|+. ...+..+.-+|..|+
T Consensus 15 ~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~---L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGDGGELVMCDKKDCPKAYHLLCLN---LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCCCSEEEECCSTTCCCEECTGGGT---CSSCCSSCCCCGGGB
T ss_pred CCCCCcCCCCCcEeEECCCCCCcccccccCc---CCcCCCCCEECCCCC
Confidence 45699998776554 88 799999999997 334455666676653
No 84
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.43 E-value=0.98 Score=40.25 Aligned_cols=54 Identities=20% Similarity=0.525 Sum_probs=39.3
Q ss_pred CCeeecCccccccCCC-----CccceecCCCCCccccccCceeEEee---CCcccchhhhhhh
Q 039867 38 EAYRSYLHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVK---GDKGLCDECLELV 92 (332)
Q Consensus 38 ~~W~C~wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr---~~kGfC~~C~~~~ 92 (332)
..|. +-..|..|++. ...+|+.|...||..|.....-.+-. ...-.|..|...+
T Consensus 156 ~~W~-~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l 217 (220)
T 1dvp_A 156 PNWA-DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAAL 217 (220)
T ss_dssp CCCC-CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred ccCC-CCCccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHH
Confidence 4687 66899999885 56789999999999998864322211 1235899998764
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.35 E-value=0.28 Score=37.44 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=23.8
Q ss_pred cceecccCCCCCchhhhhcccCCCCCC---CCCeeec
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGLVHFS---YEAYRSY 43 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~~~~s---~~~W~C~ 43 (332)
...-+.|| .|..-||..|++++..+ .+.|.|+
T Consensus 24 ~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 24 NHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCceEEcC--CCCCcEEeeecCcccccccCCCeEECC
Confidence 44567899 59999999999996543 3566664
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=70.56 E-value=1.3 Score=33.10 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=33.1
Q ss_pred cccccCCC--C--ccceecCCCCCccccccCceeEEeeCCcccchhhhhh
Q 039867 46 ICFKCDKA--P--KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 46 ~C~~C~k~--s--~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
+|.+|+++ . ...|..|+..|+..|+.-..-. +....-+|..|..-
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~-~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP-PEEMQWFCPKCANK 68 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC-CSSSCCCCTTTHHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC-CCCCCEEChhccCc
Confidence 47788876 2 3349999999999999864432 23468899999764
No 87
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=69.06 E-value=1.7 Score=33.54 Aligned_cols=57 Identities=19% Similarity=0.476 Sum_probs=39.7
Q ss_pred CCCCeee--cCccccccCCC-----CccceecCCCCCccccccCceeEEee---CCcccchhhhhhh
Q 039867 36 SYEAYRS--YLHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVK---GDKGLCDECLELV 92 (332)
Q Consensus 36 s~~~W~C--~wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr---~~kGfC~~C~~~~ 92 (332)
+...|.= .-..|..|++. ...+|..|...||..|.......+.. ...-.|..|...+
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 3457763 34578899886 45779999999999999874332211 1245899998864
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.67 E-value=1.3 Score=36.72 Aligned_cols=54 Identities=20% Similarity=0.575 Sum_probs=36.4
Q ss_pred CCeeec--CccccccCCC-----CccceecCCCCCccccccCceeEE-eeCCcccchhhhhh
Q 039867 38 EAYRSY--LHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAV-VKGDKGLCDECLEL 91 (332)
Q Consensus 38 ~~W~C~--wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~-vr~~kGfC~~C~~~ 91 (332)
..|.=. -..|.+|++. ...+|..|...||..|......++ .....-.|..|...
T Consensus 61 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~ 122 (125)
T 1joc_A 61 RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 122 (125)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHH
T ss_pred CccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHH
Confidence 356532 3478899885 456799999999999987632211 12235689999865
No 89
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=66.84 E-value=1.6 Score=33.56 Aligned_cols=56 Identities=25% Similarity=0.499 Sum_probs=35.5
Q ss_pred CCeeecC--ccccccCCC-----CccceecCCCCCccccccCceeEE-eeCCcccchhhhhhhh
Q 039867 38 EAYRSYL--HICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAV-VKGDKGLCDECLELVL 93 (332)
Q Consensus 38 ~~W~C~w--H~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~-vr~~kGfC~~C~~~~~ 93 (332)
..|.=.. ..|.+|++. ...+|..|...||..|.....-.+ .....-.|..|..++.
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred CccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 3565332 368899885 456799999999999988632111 1234568999988653
No 90
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.78 E-value=2 Score=33.91 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=25.2
Q ss_pred CccccccCCCCccceecCCCCCccccccCceeEEe-eCCcccchhhhhhh
Q 039867 44 LHICFKCDKAPKFYCLCCPSAICGPCLYEAEFAVV-KGDKGLCDECLELV 92 (332)
Q Consensus 44 wH~C~~C~k~s~~~C~~CP~S~Ck~C~~~a~f~~v-r~~kGfC~~C~~~~ 92 (332)
-++|..|++. .=+.|||++|-...+--.- ...-.||++|..||
T Consensus 18 ~~~C~~C~~~------~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 18 TAHCETCAKD------FSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp EEECTTTCCE------EEEEEECSSSCSCCCEEEETTEEEECCTTTTCCC
T ss_pred ceECcccccc------CCCcccCcchhhHHHHHHhcCCcCeeeccCCCEe
Confidence 4557777764 1234566666655443221 11268999999985
No 91
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.67 E-value=2.2 Score=33.41 Aligned_cols=60 Identities=17% Similarity=0.443 Sum_probs=40.2
Q ss_pred CCeee--cCccccccCCC-----CccceecCCCCCccccccCceeEEee-CCcccchhhhhhhhhhcc
Q 039867 38 EAYRS--YLHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVK-GDKGLCDECLELVLRKEE 97 (332)
Q Consensus 38 ~~W~C--~wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr-~~kGfC~~C~~~~~lIE~ 97 (332)
..|.= .-..|.+|++. ...+|..|...||..|.......+.. ...-.|..|+..+.-+..
T Consensus 12 p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 12 PTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKAQA 79 (90)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHHC-
T ss_pred CcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHHhh
Confidence 34652 23468899875 46779999999999999864432211 124689999987655443
No 92
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=63.90 E-value=1.5 Score=38.53 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=23.3
Q ss_pred CccccccCCCC-cccee--cCCCCCcccccc
Q 039867 44 LHICFKCDKAP-KFYCL--CCPSAICGPCLY 71 (332)
Q Consensus 44 wH~C~~C~k~s-~~~C~--~CP~S~Ck~C~~ 71 (332)
..+|.+|+.+. +++|. .||.+||..|++
T Consensus 79 ~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~ 109 (159)
T 3a1b_A 79 QSYCTICCGGREVLMCGNNNCCRCFCVECVD 109 (159)
T ss_dssp BSSCTTTSCCSEEEECSSTTTCCEEEHHHHH
T ss_pred cceeeEecCCCeEEeeCCCCCCCchhHHHHH
Confidence 56899997765 66688 799999999996
No 93
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.23 E-value=24 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=37.1
Q ss_pred cccccccCcHHHHHHHHHhCCCcCccCCHHHHHHHHHHHHHHcCCC
Q 039867 197 RKEFIGWGSKSLLEFLVSIGKDTTRKLSKQVVAIIIREYCKENNLF 242 (332)
Q Consensus 197 ~~~~~~w~S~eL~eFL~~iG~d~t~~lSR~dVvk~lW~YIK~nnLq 242 (332)
..-|-.|.-+||+.=|+-||..- .-+|.|++..|-.|..+-+.-
T Consensus 5 ~~~ygaW~~~ELQaKLaE~GAPi--~g~REElvdRLk~Y~~QtGi~ 48 (58)
T 2do5_A 5 SSGYGAWAAQELQAKLAEIGAPI--QGNREELVERLQSYTRQTGIV 48 (58)
T ss_dssp CCCSCSSCHHHHHHHHHHHTCCC--CSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCcccccCHHHHHHHHHhCCcc--cccHHHHHHHHHHHhhcccee
Confidence 34567799999999999999874 357999999999999988764
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.33 E-value=2.1 Score=35.06 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCccccccCceeEEeeC-Ccccchhhhhhh
Q 039867 63 SAICGPCLYEAEFAVVKG-DKGLCDECLELV 92 (332)
Q Consensus 63 ~S~Ck~C~~~a~f~~vr~-~kGfC~~C~~~~ 92 (332)
-++|++|-..-+.-..=| .-.||.+|+.||
T Consensus 61 ~a~CPdC~q~LevLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 61 KALCPDCHQPLQVLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp EEECTTTCSBCEEEEETTEEEEEETTTTEEE
T ss_pred cccCcchhhHHHHHHHhcCcchhhccCCcee
Confidence 477889988766555433 578999999985
No 95
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.56 E-value=3.6 Score=35.52 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=39.3
Q ss_pred cCccccccCCC------CccceecCCCCCccccccCceeEEeeCCcccchhhhhhhhhh
Q 039867 43 YLHICFKCDKA------PKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELVLRK 95 (332)
Q Consensus 43 ~wH~C~~C~k~------s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~~lI 95 (332)
+-++|..|+++ +...|..|...+|..|-. |.. ....-+|.-|++...+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~---~~~-~~~~W~C~vC~k~rel~ 121 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH---AHP-EEQGWLCDPCHLARVVK 121 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE---CCS-SSSSCEEHHHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc---ccC-CCCcEeeHHHHHHHHHH
Confidence 57999999996 555699999999999982 333 56789999999986543
No 96
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.38 E-value=2.5 Score=32.46 Aligned_cols=49 Identities=16% Similarity=0.362 Sum_probs=34.1
Q ss_pred ccccccCCC-----CccceecCCCCCccccccCceeEEee---------CCcccchhhhhhhh
Q 039867 45 HICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVK---------GDKGLCDECLELVL 93 (332)
Q Consensus 45 H~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr---------~~kGfC~~C~~~~~ 93 (332)
..|..|+.. ...+|+.|...||..|.....-.+.. ...-.|..|..++.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~ 77 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLS 77 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHH
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHh
Confidence 468888876 45679999999999998753221111 22458999998754
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.12 E-value=1.1 Score=38.15 Aligned_cols=44 Identities=25% Similarity=0.495 Sum_probs=30.1
Q ss_pred ccCCC---Cccc--eecCCCCCccccccCceeEEeeCCcccchhhhhhh
Q 039867 49 KCDKA---PKFY--CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELV 92 (332)
Q Consensus 49 ~C~k~---s~~~--C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~ 92 (332)
+|+++ ..+| |..|+..|+..|++-..-..-....-+|..|...-
T Consensus 12 ~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 12 ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 66654 3333 99999999999997433222124678999998753
No 98
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.33 E-value=3.4 Score=32.33 Aligned_cols=51 Identities=22% Similarity=0.625 Sum_probs=35.1
Q ss_pred ccccccCCC-----CccceecCCCCCccccccCceeEEee--CCcccchhhhhhhhhh
Q 039867 45 HICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVK--GDKGLCDECLELVLRK 95 (332)
Q Consensus 45 H~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr--~~kGfC~~C~~~~~lI 95 (332)
..|..|+.. ...+|..|...||..|.....-++-. ...-.|..|...+...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 357888775 45679999999999998763222211 1246899999876543
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=56.64 E-value=4.6 Score=33.62 Aligned_cols=43 Identities=26% Similarity=0.532 Sum_probs=31.9
Q ss_pred ccccccCCC-----CccceecCCCCCccccccCceeEEeeCCcccchhhhhhh
Q 039867 45 HICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELV 92 (332)
Q Consensus 45 H~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~ 92 (332)
..|..|+.. ...+|+.|...||..|.....- ..-.|..|+.+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-----~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-----GPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-----CceECHHHHHHH
Confidence 478888886 4567999999999999886321 155799998863
No 100
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=54.83 E-value=3 Score=41.17 Aligned_cols=29 Identities=21% Similarity=0.498 Sum_probs=23.8
Q ss_pred CccccccCCCC-cccee--cCCCCCccccccC
Q 039867 44 LHICFKCDKAP-KFYCL--CCPSAICGPCLYE 72 (332)
Q Consensus 44 wH~C~~C~k~s-~~~C~--~CP~S~Ck~C~~~ 72 (332)
..+|.+|+.+. .+.|. .|+.+||+.|++-
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHH
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHH
Confidence 45888887665 66698 9999999999974
No 101
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=53.17 E-value=2.8 Score=33.57 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=40.8
Q ss_pred CccccccC---CCCccceecCCCCCccccccCceeEEe-----------eCCcccchhhhhhhhhhccccC
Q 039867 44 LHICFKCD---KAPKFYCLCCPSAICGPCLYEAEFAVV-----------KGDKGLCDECLELVLRKEEKKD 100 (332)
Q Consensus 44 wH~C~~C~---k~s~~~C~~CP~S~Ck~C~~~a~f~~v-----------r~~kGfC~~C~~~~~lIE~~~~ 100 (332)
-..|.+|+ ...+|-|+.|+..|+-.|+...-+..- -...--|-.|-+|-+|+...+-
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLtEeE~ 85 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEESG 85 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSCCCCC
T ss_pred CcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcchhhc
Confidence 34788997 557888999999999999987422221 2235678899888777765543
No 102
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.08 E-value=2.8 Score=39.89 Aligned_cols=55 Identities=16% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCeee--cCccccccCCC-----CccceecCCCCCccccccCceeEEeeC--Ccccchhhhhhh
Q 039867 38 EAYRS--YLHICFKCDKA-----PKFYCLCCPSAICGPCLYEAEFAVVKG--DKGLCDECLELV 92 (332)
Q Consensus 38 ~~W~C--~wH~C~~C~k~-----s~~~C~~CP~S~Ck~C~~~a~f~~vr~--~kGfC~~C~~~~ 92 (332)
..|.= .-..|..|+.. ...+|..|+..||..|.....-.+..+ ..-.|..|+..+
T Consensus 367 p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 367 PTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35652 24678999875 457799999999999997633222112 246899998754
No 103
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=52.60 E-value=2.7 Score=32.31 Aligned_cols=28 Identities=29% Similarity=0.772 Sum_probs=23.9
Q ss_pred ccccccCC----CCccceecCCCCCccccccC
Q 039867 45 HICFKCDK----APKFYCLCCPSAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~k----~s~~~C~~CP~S~Ck~C~~~ 72 (332)
-.|++|.. ++..+|..|-.+||..|+..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 36899974 57888999999999999985
No 104
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.54 E-value=5.5 Score=28.65 Aligned_cols=44 Identities=20% Similarity=0.485 Sum_probs=29.9
Q ss_pred ccccCCCC---ccc--eecCCCCCccccccCceeEEeeCCcccchhhhh
Q 039867 47 CFKCDKAP---KFY--CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 47 C~~C~k~s---~~~--C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
|.+|+++. .+| |..|..-|+..|+.-..-..-....-+|..|..
T Consensus 9 C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 34777763 445 999999999999985432221235788998865
No 105
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=48.27 E-value=30 Score=25.08 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 223 LSKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 223 lSR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
|+|.+|...|.+.|.+.--.+| ..|-.|..|..-+|-+++...++...|+.+|--..
T Consensus 5 m~~~~i~~~l~~~i~~~l~~~~--~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 5 MDNDEIFSKVRSIISEQLDKKE--DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp STHHHHHHHHHHHHHHHHCCCG--GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCT
T ss_pred CCHHHHHHHHHHHHHHHhCCCc--ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 8999999999999987532222 56788999977899999999999999999997655
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=48.24 E-value=6.2 Score=29.70 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=29.8
Q ss_pred ccccccCCCC---ccceec--CC-CCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKAP---KFYCLC--CP-SAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~s---~~~C~~--CP-~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
.+| +|++.. ...|.. || ..|+..|+.= ..+..++-||..|..
T Consensus 17 ~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl---~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 17 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---TTKPRGKWFCPRCSQ 64 (71)
T ss_dssp CCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC---SSCCSSCCCCTTTSS
T ss_pred CEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc---CcCCCCCEECCCCCc
Confidence 456 587742 233888 99 6999999983 334457899999954
No 107
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.81 E-value=5.9 Score=33.41 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=37.5
Q ss_pred cCccccccCCCC------ccceecCCCCCccccccCceeEEeeCCcccchhhhhhhhh
Q 039867 43 YLHICFKCDKAP------KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELVLR 94 (332)
Q Consensus 43 ~wH~C~~C~k~s------~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~~l 94 (332)
+-++|..|+++= ...|..|...+|..|-...-... +...-+|.-|.+..-+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~-~~~~W~C~vC~k~rel 110 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR-PHPVWLCKICLEQREV 110 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS-SSCCEEEHHHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCC-CccceechhhHHHHHH
Confidence 468999998763 33699999999999976432111 4457899999987544
No 108
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=47.07 E-value=8 Score=30.00 Aligned_cols=29 Identities=24% Similarity=0.638 Sum_probs=23.4
Q ss_pred CccccccCCC----CccceecCCC----CCccccccC
Q 039867 44 LHICFKCDKA----PKFYCLCCPS----AICGPCLYE 72 (332)
Q Consensus 44 wH~C~~C~k~----s~~~C~~CP~----S~Ck~C~~~ 72 (332)
...|+.|+.. ..|.|..||. -+|..|...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhC
Confidence 4489999974 4688999995 799999875
No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=46.33 E-value=4.8 Score=32.28 Aligned_cols=32 Identities=6% Similarity=-0.062 Sum_probs=22.4
Q ss_pred cceecccCCCCCchhhhhcccCC--------------CCCCCCCeeec
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGL--------------VHFSYEAYRSY 43 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~--------------~~~s~~~W~C~ 43 (332)
.-++|-| +.|+++||..||.- ...+..-|.|+
T Consensus 26 ~~~l~pC--RvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~ 71 (89)
T 1wil_A 26 AESLFPC--RVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCH 71 (89)
T ss_dssp SSCCSSC--SSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCT
T ss_pred ccceecc--ccccccccHhhcccccccccHHHHHHHHccCCCCCcccc
Confidence 3456666 57999999999643 23356778874
No 110
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.24 E-value=14 Score=26.81 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=23.3
Q ss_pred eecCCCCCcccccc-CceeEEeeCCcccchhhhhhhhhhc
Q 039867 58 CLCCPSAICGPCLY-EAEFAVVKGDKGLCDECLELVLRKE 96 (332)
Q Consensus 58 C~~CP~S~Ck~C~~-~a~f~~vr~~kGfC~~C~~~~~lIE 96 (332)
|..|. .|..-+. +..|.. ++++.+|..|..-+..-+
T Consensus 31 CF~C~--~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 31 CALCV--RCGQMFAEGEEMYL-QGSSIWHPACRQAARTED 67 (73)
T ss_dssp TSCCS--SSCCCCCSSCCCEE-ETTEEECTTHHHHTSSSS
T ss_pred cCEeC--CCCCCCCCCCeeEe-eCCEEEChHHChHhhccc
Confidence 44443 2555566 445554 889999999997665533
No 111
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=45.21 E-value=4.7 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=17.2
Q ss_pred eecccCCCCCchhhhhccc
Q 039867 12 IKFNMSSYNSLYAFRMKLT 30 (332)
Q Consensus 12 ~~~~cd~~~C~KayH~~C~ 30 (332)
..+.|..++|..+||+.|-
T Consensus 30 AciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 30 ASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CEEECSCTTTCCEEEHHHH
T ss_pred EeEecCCCCCCCcCcHHHH
Confidence 5688999999999999993
No 112
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=44.37 E-value=13 Score=31.29 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=46.6
Q ss_pred CchhhhhcccCC----------CCCCCCCeeecCc-------cccccCCCC--------------ccceecCCCCCcccc
Q 039867 21 SLYAFRMKLTGL----------VHFSYEAYRSYLH-------ICFKCDKAP--------------KFYCLCCPSAICGPC 69 (332)
Q Consensus 21 C~KayH~~C~~~----------~~~s~~~W~C~wH-------~C~~C~k~s--------------~~~C~~CP~S~Ck~C 69 (332)
-.+.||+.|..- ...-+|+-.|.-| .|..|+++- +-.|..|.. |..-
T Consensus 25 ~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~--C~~~ 102 (169)
T 2rgt_A 25 LDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVV--CKRQ 102 (169)
T ss_dssp SSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTT--TCCB
T ss_pred CCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCC--CCCC
Confidence 356788877433 1223567777655 488887742 112566654 6655
Q ss_pred cc-CceeEEeeCCcccchhhhhhhhhh
Q 039867 70 LY-EAEFAVVKGDKGLCDECLELVLRK 95 (332)
Q Consensus 70 ~~-~a~f~~vr~~kGfC~~C~~~~~lI 95 (332)
+. +..|..+..++.+|..|...++.-
T Consensus 103 L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 103 LATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp CCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred CCCCCceEEccCCeEECHHHHHHHhhc
Confidence 65 567777678899999999877654
No 113
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=43.64 E-value=3.8 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.723 Sum_probs=21.6
Q ss_pred ccccccCCC--CccceecCC-CCCccccccC
Q 039867 45 HICFKCDKA--PKFYCLCCP-SAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~k~--s~~~C~~CP-~S~Ck~C~~~ 72 (332)
..|+.|++. ..|+|..|| +.+|..|...
T Consensus 7 ~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 7 YTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp EEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 468888765 568899999 6789888764
No 114
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.32 E-value=6.3 Score=29.08 Aligned_cols=28 Identities=21% Similarity=0.744 Sum_probs=22.5
Q ss_pred ccccccCCC----CccceecCC-CCCccccccC
Q 039867 45 HICFKCDKA----PKFYCLCCP-SAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~k~----s~~~C~~CP-~S~Ck~C~~~ 72 (332)
..|+.|+.. ..|.|..|| +-+|..|...
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 579999876 468899999 6788888764
No 115
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.69 E-value=5.4 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.470 Sum_probs=29.2
Q ss_pred ccccccCCCC---ccceec--CC-CCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKAP---KFYCLC--CP-SAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~s---~~~C~~--CP-~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
.+| +|++++ ...|.. || ..|+..|+. ...+..++-+|..|.+
T Consensus 11 ~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg---l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC---CCcCCCCCEECcCccC
Confidence 345 677632 233888 88 689999998 3334557899999864
No 116
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.42 E-value=8.1 Score=28.37 Aligned_cols=27 Identities=26% Similarity=0.782 Sum_probs=22.3
Q ss_pred eecCccccccCCCCccceecCCCCCcc
Q 039867 41 RSYLHICFKCDKAPKFYCLCCPSAICG 67 (332)
Q Consensus 41 ~C~wH~C~~C~k~s~~~C~~CP~S~Ck 67 (332)
..+-..|.+|+..+.|.|..|-.-||-
T Consensus 9 ~~~~~~C~vC~~~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 9 KCSTVVCVICLEKPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCCCTTTCSCCSEECTTTCCEESS
T ss_pred CCCCCccCcCcCCCeeeCCCCCCCeeC
Confidence 345568999999999999999887774
No 117
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=41.52 E-value=7.2 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=23.2
Q ss_pred ccccccCCC----CccceecCC-CCCccccccCc
Q 039867 45 HICFKCDKA----PKFYCLCCP-SAICGPCLYEA 73 (332)
Q Consensus 45 H~C~~C~k~----s~~~C~~CP-~S~Ck~C~~~a 73 (332)
..|+.|+.. ..|.|..|| +-+|..|....
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 569999974 468899999 77899997753
No 118
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.25 E-value=20 Score=26.44 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCCCCCCCeeecCccccccCCCCccceecCC
Q 039867 31 GLVHFSYEAYRSYLHICFKCDKAPKFYCLCCP 62 (332)
Q Consensus 31 ~~~~~s~~~W~C~wH~C~~C~k~s~~~C~~CP 62 (332)
++++++.+.|.|+ .|.+-.++....|..|-
T Consensus 23 ~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACe 52 (57)
T 2ebv_A 23 DKFKRPIGSWECS--VCCVSNNAEDNKCVSCM 52 (57)
T ss_dssp SCCCCCSSSCCCS--SSCCCCCSSCSBCSSSC
T ss_pred HhcCCCCCeeeCC--eeEccCccCCceeeEcC
Confidence 4488899999996 68888899999998885
No 119
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=36.98 E-value=6 Score=29.99 Aligned_cols=28 Identities=29% Similarity=0.772 Sum_probs=22.7
Q ss_pred ccccccC----CCCccceecCCCCCccccccC
Q 039867 45 HICFKCD----KAPKFYCLCCPSAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~----k~s~~~C~~CP~S~Ck~C~~~ 72 (332)
-.|+.|. ..+.-.|..|-.|||..|+..
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3588884 357788999999999999873
No 120
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=36.92 E-value=23 Score=25.41 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 222 KLSKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 222 ~lSR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
+|++.++...|.++|.+.--.+| ..|-.|..|..-+|-+++...++...|+.+|--..
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~--~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i 59 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE--ADVKLEASFKEDLGADXLDVVELVMELEDEFDMEI 59 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS--SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH--HhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCcc
Confidence 47888999999999887632222 46778888877899999999999999999997655
No 121
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=36.66 E-value=13 Score=29.57 Aligned_cols=26 Identities=0% Similarity=-0.331 Sum_probs=19.0
Q ss_pred CCCchhhhhcccCCCC------CCCCCeeecC
Q 039867 19 YNSLYAFRMKLTGLVH------FSYEAYRSYL 44 (332)
Q Consensus 19 ~~C~KayH~~C~~~~~------~s~~~W~C~w 44 (332)
-.|...||..|+++.. ...+.|.||.
T Consensus 79 ~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~ 110 (117)
T 4bbq_A 79 CICNEIVHPGCLQMDGEGLLNEELPNCWECPK 110 (117)
T ss_dssp TTTCCEECGGGCCSCCCCEECSSSSSEEECTT
T ss_pred eecCCeEECCCCCCCccccccccCCCCeECCC
Confidence 4699999999999742 2245688863
No 122
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.27 E-value=24 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCCCCCCCCeeecCccccccCCCCccceecCC
Q 039867 31 GLVHFSYEAYRSYLHICFKCDKAPKFYCLCCP 62 (332)
Q Consensus 31 ~~~~~s~~~W~C~wH~C~~C~k~s~~~C~~CP 62 (332)
..++++.+.|.|+ .|.+=..+....|..|-
T Consensus 3 ~~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~ 32 (47)
T 2ebr_A 3 SGSSGPEGSWDCE--LCLVQNKADSTKCLACE 32 (47)
T ss_dssp SSCSSCCSSCCCS--SSCCCCCSSCSBCSSSC
T ss_pred ccccCCCCeeECC--eeecCCcCCcceecCcC
Confidence 4578889999996 57777888888888884
No 123
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=36.15 E-value=9.1 Score=39.25 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=26.2
Q ss_pred ccceecccCCCCCchhhhhcccCCCCCC---CCCeeecC
Q 039867 9 PQHIKFNMSSYNSLYAFRMKLTGLVHFS---YEAYRSYL 44 (332)
Q Consensus 9 ~~~~~~~cd~~~C~KayH~~C~~~~~~s---~~~W~C~w 44 (332)
|...-..|| .|..=||..|+|++... .++|.||.
T Consensus 54 ~~~~mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 54 NDFQWIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp STTSEEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred cCCCEEECC--CCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 334456799 69999999999996643 47888876
No 124
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=35.08 E-value=4.7 Score=33.02 Aligned_cols=51 Identities=31% Similarity=0.613 Sum_probs=34.5
Q ss_pred ccccccCCCCccc--eecCCCCCccccccCceeEEeeCCcccchhhhhhhhhhcccc
Q 039867 45 HICFKCDKAPKFY--CLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELVLRKEEKK 99 (332)
Q Consensus 45 H~C~~C~k~s~~~--C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~~lIE~~~ 99 (332)
|+|+.|+.+-... -.-|-.+||.+|..... .++...|..|...|.-||...
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~----~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHE----KKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHH----HTTCCBCTTTCCBCSEEEEEE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHH----hccCCCCcCcCCeeeeeEEec
Confidence 8999999996443 56677778887774310 234456777777777777643
No 125
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=34.09 E-value=9 Score=29.26 Aligned_cols=26 Identities=27% Similarity=0.858 Sum_probs=21.1
Q ss_pred ccccCCCCccceecC-CCCCccccccC
Q 039867 47 CFKCDKAPKFYCLCC-PSAICGPCLYE 72 (332)
Q Consensus 47 C~~C~k~s~~~C~~C-P~S~Ck~C~~~ 72 (332)
|-||...|.++|.-| .--||.+|..+
T Consensus 11 C~ICneDAtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 11 CCICNEDATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CTTTCSCCCEEETTTTSEEECSSHHHH
T ss_pred eEEeCCCCeEEecCCCCceehHHHHHH
Confidence 779999999999988 46677777764
No 126
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=33.79 E-value=12 Score=30.14 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=31.9
Q ss_pred cCccccccCCC--------CccceecCCCCCccccccCceeEEeeCCcccchhhhhhh
Q 039867 43 YLHICFKCDKA--------PKFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELV 92 (332)
Q Consensus 43 ~wH~C~~C~k~--------s~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~ 92 (332)
.-.+|-+||.. ...-|..|.+.+|+.|+.- -. +.+.-.|..|..-.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY---Er-keG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY---ER-REGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH---HH-HTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH---HH-hccCccccccCCcc
Confidence 44789999877 3344999999999999862 11 44455666665443
No 127
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.46 E-value=6.6 Score=39.55 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=24.5
Q ss_pred cceecccCCCCCchhhhhcccCCCCCCC---CCeeec
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGLVHFSY---EAYRSY 43 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~~~~s~---~~W~C~ 43 (332)
...-..|| .|..=||..|+|+...+. +.|.|+
T Consensus 49 ~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 83 (488)
T 3kv5_D 49 NRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCP 83 (488)
T ss_dssp TSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCH
T ss_pred CCCeEEcc--CCCCceeeeecCcCcccccCCCEEECC
Confidence 44567899 499999999999976653 567665
No 128
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.07 E-value=17 Score=28.68 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=29.9
Q ss_pred ccccccCCCC---ccceec--CC-CCCccccccCceeEEeeCCcccchh-hhhhh
Q 039867 45 HICFKCDKAP---KFYCLC--CP-SAICGPCLYEAEFAVVKGDKGLCDE-CLELV 92 (332)
Q Consensus 45 H~C~~C~k~s---~~~C~~--CP-~S~Ck~C~~~a~f~~vr~~kGfC~~-C~~~~ 92 (332)
.+| +|++++ ...|.. || ..|+..|+.= ..+..+.-||.. |.++.
T Consensus 27 ~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl---~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 27 VYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGL---KQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp CCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSC---SSCTTSCCCSSHHHHHHH
T ss_pred cEE-EeCCCCCCCEEEecCCCCccccCcCccCCC---CcCCCCCccCChhhcchh
Confidence 345 677642 233877 77 6899999983 233457899999 98643
No 129
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.90 E-value=32 Score=24.67 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=20.7
Q ss_pred CCchhh--------hhcccCCCCCCCCCeeecCccccccCCC
Q 039867 20 NSLYAF--------RMKLTGLVHFSYEAYRSYLHICFKCDKA 53 (332)
Q Consensus 20 ~C~Kay--------H~~C~~~~~~s~~~W~C~wH~C~~C~k~ 53 (332)
.|.|+| |..-.-....+.....|.|+.|..|++.
T Consensus 30 ~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~ 71 (95)
T 2ej4_A 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS 71 (95)
T ss_dssp CCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCC
T ss_pred ccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcc
Confidence 577776 4332122223345567889999888876
No 130
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=30.27 E-value=14 Score=26.31 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=17.2
Q ss_pred cccc-CceeEEeeCCcccchhhh
Q 039867 68 PCLY-EAEFAVVKGDKGLCDECL 89 (332)
Q Consensus 68 ~C~~-~a~f~~vr~~kGfC~~C~ 89 (332)
.|.+ +..|.-..+|+|||..|.
T Consensus 17 kCRk~GC~fFGTpen~GFCTlCf 39 (48)
T 2eqe_A 17 KCRKAGCVYFGTPENKGFCTLCF 39 (48)
T ss_dssp BCSSTTCCSBCCTTTTTCCHHHH
T ss_pred hhhhcCCCcccCcccCceeeeeh
Confidence 3443 567888899999999995
No 131
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=29.24 E-value=27 Score=24.59 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=17.5
Q ss_pred ccccccCceeEEeeCCcccc-hhhhh
Q 039867 66 CGPCLYEAEFAVVKGDKGLC-DECLE 90 (332)
Q Consensus 66 Ck~C~~~a~f~~vr~~kGfC-~~C~~ 90 (332)
|..-+.+..|.. +.++.+| ..|.+
T Consensus 38 C~~~L~~~~f~~-~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 38 CSKCLIGQKFMP-VEGMVFCSVECKK 62 (65)
T ss_dssp TCCBCTTSCCEE-ETTEEESSHHHHH
T ss_pred CCCcCCCCceEE-ECCEEecCHHHhh
Confidence 555556667776 7889999 88875
No 132
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=29.04 E-value=96 Score=21.88 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 223 LSKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 223 lSR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
|+|.++...|.++|.+.-=.+| ..|-.|..|..-+|-+++...++...|+.+|--..
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~--~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i 59 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV--EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKI 59 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT--TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH--HHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCC
Confidence 7899999999999987532222 45667888866688999999999999999997655
No 133
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=28.78 E-value=44 Score=24.39 Aligned_cols=56 Identities=11% Similarity=-0.057 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 224 SKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 224 SR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
++.++...|.++|.+.--.+| ..|-.|..|..+.+-+++.+.++.-.|+.+|--..
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~--~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i 56 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD--VKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDA 56 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS--TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCc--ccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcC
Confidence 456788888899887652222 45778888887756999999999999999997665
No 134
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=28.37 E-value=99 Score=21.89 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 223 LSKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 223 lSR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
|+|.++...|.+.|.+.-=.+| ..|-.|..|..-+|-+++...++...|+.+|--..
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~--~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK--AIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT--TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh--hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCC
Confidence 7889999999999887532222 45778888877799999999999999999996555
No 135
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=28.31 E-value=4.8 Score=40.23 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=24.5
Q ss_pred cceecccCCCCCchhhhhcccCCCCCC---CCCeeec
Q 039867 10 QHIKFNMSSYNSLYAFRMKLTGLVHFS---YEAYRSY 43 (332)
Q Consensus 10 ~~~~~~cd~~~C~KayH~~C~~~~~~s---~~~W~C~ 43 (332)
...-..|| .|.-=||..|+|+...+ .+.|.||
T Consensus 17 ~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~ 51 (447)
T 3kv4_A 17 TRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCP 51 (447)
T ss_dssp TSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCH
T ss_pred CCCeEEcC--CCCcccccccCCcCcccccCCCEEECC
Confidence 35567899 69999999999996543 3667765
No 136
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.93 E-value=67 Score=23.18 Aligned_cols=34 Identities=26% Similarity=0.644 Sum_probs=23.7
Q ss_pred eecCCCCCcccccc-CceeEEeeCCcccchhhhhhhh
Q 039867 58 CLCCPSAICGPCLY-EAEFAVVKGDKGLCDECLELVL 93 (332)
Q Consensus 58 C~~CP~S~Ck~C~~-~a~f~~vr~~kGfC~~C~~~~~ 93 (332)
|..|.. |..-+. +..|..++.++.+|..|..-.+
T Consensus 41 CF~C~~--C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 41 CFACMS--CKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp SCBCTT--TCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred cCCccC--CCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 666654 666675 3556656888999999986544
No 137
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=25.49 E-value=31 Score=30.55 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=17.1
Q ss_pred ceecccCCCCCchhhhhcccCCCC
Q 039867 11 HIKFNMSSYNSLYAFRMKLTGLVH 34 (332)
Q Consensus 11 ~~~~~cd~~~C~KayH~~C~~~~~ 34 (332)
..-+.|++ |.+-||..|+....
T Consensus 18 ~~mLqC~~--C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 18 EVELQCGI--CTKWFTADTFGIDT 39 (177)
T ss_dssp SCEEECTT--TCCEEEGGGGTCCC
T ss_pred ceeEeecc--ccceecHHHhcccc
Confidence 44567877 99999999998543
No 138
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=25.46 E-value=13 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.604 Sum_probs=22.4
Q ss_pred cCccccccC----CCCccceecCCCCCcc-cccc
Q 039867 43 YLHICFKCD----KAPKFYCLCCPSAICG-PCLY 71 (332)
Q Consensus 43 ~wH~C~~C~----k~s~~~C~~CP~S~Ck-~C~~ 71 (332)
|...|.+|+ ..++|.|..|-.-||- .|.+
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k 43 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYR 43 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCEESSHHHHH
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCCccChHHHH
Confidence 346899998 4689999999988885 5554
No 139
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.92 E-value=50 Score=26.04 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=29.1
Q ss_pred ccccccCCC---Cccceec--CC-CCCccccccCceeEEeeCCcccchhhhh
Q 039867 45 HICFKCDKA---PKFYCLC--CP-SAICGPCLYEAEFAVVKGDKGLCDECLE 90 (332)
Q Consensus 45 H~C~~C~k~---s~~~C~~--CP-~S~Ck~C~~~a~f~~vr~~kGfC~~C~~ 90 (332)
.+| +|++. -...|.. || ..|+..|+.= ..+..++-+|..|..
T Consensus 37 ~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl---~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 37 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---TTKPRGKWFCPRCSQ 84 (91)
T ss_dssp BCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC---SSCCCSSCCCTTTCC
T ss_pred cEE-ECCCCCCCCEeEecCCCCCCCCEecccCCc---CcCCCCCEECcCccC
Confidence 345 67663 2333988 99 6899999983 223457899999964
No 140
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=24.61 E-value=58 Score=22.92 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 223 LSKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 223 lSR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
|+|.++...|.++|.+.-=.+| ..|-.|..|..-+|-+++...++...|+.+|--..
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~--~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i 57 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP--EKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEI 57 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG--GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH--HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCc
Confidence 5788888888888876521122 45667888867789999999999999999986554
No 141
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.49 E-value=69 Score=24.22 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=47.0
Q ss_pred CccCCHHHHHHHHHHHHHHcCCCCCCCCccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 220 TRKLSKQVVAIIIREYCKENNLFHPDKKEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 220 t~~lSR~dVvk~lW~YIK~nnLqDP~~r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
+..|++.+|...|.+.|.+.=-.+| ..|-.|..|..-+|-+++...+|.-.|+.+|--..
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~~~~--~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i 67 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDKIDP--EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEI 67 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTSCT--TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCH--hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 4469999999999999988632223 45667777755589999999999999999996554
No 142
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.77 E-value=20 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.907 Sum_probs=15.2
Q ss_pred CccccccCCC-----------------CccceecCCCCC
Q 039867 44 LHICFKCDKA-----------------PKFYCLCCPSAI 65 (332)
Q Consensus 44 wH~C~~C~k~-----------------s~~~C~~CP~S~ 65 (332)
.|.|.+|++. ..|.|..|+.+|
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 4788888765 246677777665
No 143
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.19 E-value=44 Score=22.88 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=25.4
Q ss_pred ccccccCCCC-ccceecCCCCCccccccCceeEEeeCCcccchhhhhhh
Q 039867 45 HICFKCDKAP-KFYCLCCPSAICGPCLYEAEFAVVKGDKGLCDECLELV 92 (332)
Q Consensus 45 H~C~~C~k~s-~~~C~~CP~S~Ck~C~~~a~f~~vr~~kGfC~~C~~~~ 92 (332)
..|.+|...- .-.-.-|..+||..|+.. ....|..|...+
T Consensus 7 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------SGMQCPICQAPW 47 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------SSSSCSSCCSSS
T ss_pred CCceEeCCccCCeEEcCCCCcccHHHHcc--------CCCCCCcCCcEe
Confidence 3466775442 112356888999999877 245677776554
No 144
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=62 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=17.6
Q ss_pred ccccccCceeEEeeCCcccchhhhhh
Q 039867 66 CGPCLYEAEFAVVKGDKGLCDECLEL 91 (332)
Q Consensus 66 Ck~C~~~a~f~~vr~~kGfC~~C~~~ 91 (332)
|..=+.+..|.. +.++.+|..|..-
T Consensus 37 C~~~L~~~~~~~-~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 37 CRKQLSGQRFTA-RDDFAYCLNCFCD 61 (70)
T ss_dssp SCCBCTTSCCEE-SSSSEECHHHHHH
T ss_pred CCCcCCcCceEe-eCCeEECHHHHHH
Confidence 555555666765 7888999998754
No 145
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.76 E-value=37 Score=23.08 Aligned_cols=9 Identities=33% Similarity=0.980 Sum_probs=4.1
Q ss_pred cceecCCCC
Q 039867 56 FYCLCCPSA 64 (332)
Q Consensus 56 ~~C~~CP~S 64 (332)
|.|..|+.+
T Consensus 40 ~~C~~C~k~ 48 (62)
T 1vd4_A 40 FRCTFCHTE 48 (62)
T ss_dssp EBCSSSCCB
T ss_pred EECCCCCCc
Confidence 444444443
No 146
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=21.65 E-value=31 Score=26.93 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCCCCCCCeeecCccccccCCCCccceecCCC
Q 039867 32 LVHFSYEAYRSYLHICFKCDKAPKFYCLCCPS 63 (332)
Q Consensus 32 ~~~~s~~~W~C~wH~C~~C~k~s~~~C~~CP~ 63 (332)
.+.+..+.|+|+ .|.+=..++...|..|-.
T Consensus 58 ~f~~~~g~W~C~--~C~~~N~a~~~~C~~C~~ 87 (92)
T 3gj8_B 58 KFKKPEGSWDCE--VCLVQNKADSTKCIACES 87 (92)
T ss_dssp ------CCEECT--TTCCEECSSCSBCTTTCC
T ss_pred ccCCCCCcccCC--cCCcCChhhcccccccCC
Confidence 366678999998 888888889988988853
No 147
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.58 E-value=34 Score=25.78 Aligned_cols=27 Identities=41% Similarity=0.994 Sum_probs=21.2
Q ss_pred ccccccCCCC---ccceecCCCCCccccccC
Q 039867 45 HICFKCDKAP---KFYCLCCPSAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~k~s---~~~C~~CP~S~Ck~C~~~ 72 (332)
-.|+.|++.- .|.| .|..-||..|...
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~ 45 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKC-KCGSTFCGSHRYP 45 (64)
T ss_dssp CSCTTTCCCCTTSCEEC-TTSCEECSSSCSS
T ss_pred CcChhhCCcccccCeEe-ecCCEecccCCCc
Confidence 3577999862 3679 7999999999864
No 148
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.31 E-value=11 Score=33.21 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=16.6
Q ss_pred ecccCCCCCchhhhhcccCCCC
Q 039867 13 KFNMSSYNSLYAFRMKLTGLVH 34 (332)
Q Consensus 13 ~~~cd~~~C~KayH~~C~~~~~ 34 (332)
-..|| .|-.=||..|+|++.
T Consensus 21 MIqCd--~C~~W~H~~Cvgi~~ 40 (183)
T 3lqh_A 21 MMQCG--KCDRWVHSKCENLSD 40 (183)
T ss_dssp EEECT--TTCCEEEGGGSSCCH
T ss_pred eEECC--CCCcccchhccccCH
Confidence 35788 899999999999853
No 149
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.92 E-value=19 Score=26.50 Aligned_cols=23 Identities=26% Similarity=1.005 Sum_probs=17.9
Q ss_pred ccccCCCC----ccceecCCCCCcccc
Q 039867 47 CFKCDKAP----KFYCLCCPSAICGPC 69 (332)
Q Consensus 47 C~~C~k~s----~~~C~~CP~S~Ck~C 69 (332)
|+.|++.- .|.|..|-+.||-+|
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dC 44 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDC 44 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHH
T ss_pred ccccCcccCCCccEECCccCcCcccch
Confidence 78786653 478888989998887
No 150
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=20.78 E-value=32 Score=25.34 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHcC-CCCCCC-CccccchhhhhhhCCceechHhHHHHHHhcccCCC
Q 039867 223 LSKQVVAIIIREYCKENN-LFHPDK-KEICCDAKLQALLGRKSVEKRKLCELLTIHFAENL 281 (332)
Q Consensus 223 lSR~dVvk~lW~YIK~nn-LqDP~~-r~IiCDekLk~LFgk~~V~~~~m~kLL~~H~~~n~ 281 (332)
|+|.+|...|.++|.+.- +.+ -. ..|-.|..|..-+|-+++.+.++.-.|+.+|--..
T Consensus 4 m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i 63 (88)
T 2l4b_A 4 MVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEI 63 (88)
T ss_dssp SSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCc
Confidence 889999999999998752 211 12 56778888877789999999999999999997665
No 151
>2fk4_A Protein E6; zinc binding domain, oncoprotein, metal binding protein; NMR {Human papillomavirus type 16} SCOP: g.90.1.1 PDB: 2ljz_A
Probab=20.76 E-value=25 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.510 Sum_probs=27.5
Q ss_pred cceecCCCCCccc-----cccCceeEEeeCC-cccchhhhhh
Q 039867 56 FYCLCCPSAICGP-----CLYEAEFAVVKGD-KGLCDECLEL 91 (332)
Q Consensus 56 ~~C~~CP~S~Ck~-----C~~~a~f~~vr~~-kGfC~~C~~~ 91 (332)
-+|+.|-+-++.. +..+..|-.|++. +|.|.+|.+.
T Consensus 25 IRC~~C~k~L~~~EK~~~~~~~~~Fh~VRg~WRG~C~~C~~~ 66 (75)
T 2fk4_A 25 IRCINCQKPLSPEEKQRHLDKKQRFHNIRGRWTGRCMSCSRS 66 (75)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHCSCEEEETTEEESHHHHHSCC
T ss_pred EEhHHcCCcCCHHHHHHHHHCCCCEEEECCeEEEECcccCCc
Confidence 3577777776653 4557899999987 9999999754
No 152
>2jq3_A Apolipoprotein C-III; APOCIII, structure, dynamics, receptor, lipid binding protein; NMR {Homo sapiens}
Probab=20.50 E-value=40 Score=26.28 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=12.2
Q ss_pred hHHHHHHHHhhhcC
Q 039867 119 FFYDYWRIIKKKEC 132 (332)
Q Consensus 119 LFK~YW~~iK~ke~ 132 (332)
-.|+||.-+|+|++
T Consensus 49 SLkdYWSt~~gKfs 62 (79)
T 2jq3_A 49 SLKDYWSTVKDKFS 62 (79)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhh
Confidence 36999999999986
No 153
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.43 E-value=37 Score=25.60 Aligned_cols=27 Identities=33% Similarity=0.848 Sum_probs=21.0
Q ss_pred ccccccCCCC---ccceecCCCCCccccccC
Q 039867 45 HICFKCDKAP---KFYCLCCPSAICGPCLYE 72 (332)
Q Consensus 45 H~C~~C~k~s---~~~C~~CP~S~Ck~C~~~ 72 (332)
-.|+.|++.- .|.| .|..-||..|...
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy~ 45 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMC-RCGTTFCGSHRYP 45 (64)
T ss_dssp CCCTTTCCCCCTTCEEC-SSSCEECTTTCST
T ss_pred CcChhhCCccCccCEEe-ecCCEeccccCCc
Confidence 3577999862 3669 6999999999874
Done!