BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039868
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 26/204 (12%)
Query: 119 DGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINT 178
DG G WK I P ++ NTDGID +S+NI I SNIATGDD +AI
Sbjct: 181 DGDGFTAWKTT----------IKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA 230
Query: 179 GSSQINVTGLTC-----GPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQ 233
+ ++ G GHG+SIGS E V V V + +N T NGLRIK+ +
Sbjct: 231 YKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDK 285
Query: 234 GGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD 293
+G + ++++ + +V PI+ID Y E +N SD+++ + TS T+
Sbjct: 286 SAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEG----SNVPDWSDITFKDV--TSETKG 339
Query: 294 AIALNCSRTVGCDNIVLEHIHIAS 317
+ LN + ++++ + S
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKLTS 363
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 3/142 (2%)
Query: 148 NTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEA 207
NTDG DIS S ++I + + DDCIAIN+G S I+ TG TC GHG+SIGS+G + +
Sbjct: 152 NTDGFDISESTGVYISGATVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGR-DD 209
Query: 208 AAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDV-DNPIIIDQFYCPHE 266
V+ V + + T++ + NG+RIKT +G +IT+++I L+ + D I+I+Q Y
Sbjct: 210 NTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGS 269
Query: 267 QCSNETNAVKISDVSYTGIHGT 288
+ + I+DV+ G+ GT
Sbjct: 270 PTGTPSTGIPITDVTVDGVTGT 291
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 148 NTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEA 207
NTD D+ +S ++I +N+ DDC+AIN+G + I TG TC GHG+SIGS+G + +
Sbjct: 153 NTDAFDVGSSTGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGGHGLSIGSVGGRSD- 210
Query: 208 AAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDN-PIIIDQFYCPHE 266
V+ V + N + + NG+RIKT G +G +T++ ITL+++ I+I+Q Y
Sbjct: 211 NTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGS 270
Query: 267 QCSNETNAVKISDVSYTGIHGT 288
TN V I+ ++ + I G+
Sbjct: 271 PTGTPTNGVPITGLTLSKITGS 292
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 11/216 (5%)
Query: 82 GNLIAPEGPSSWKGK----DRRSWLYXXXXXXXXXXXXXEIDGQGSQWWKLCSDDATLSN 137
G+LI +G W GK ++ + I + + ++D T ++
Sbjct: 104 GHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQANDITFTD 163
Query: 138 LHISAPESSP----NTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPG 193
+ I+ + NTD D+ S ++I+ + DDC+A+N+G I TG TC G
Sbjct: 164 VTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGG 222
Query: 194 HGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDV- 252
HG+SIGS+G + V+ V +++ T++ ++N +RIKT G +G +IT+++I ++ +
Sbjct: 223 HGLSIGSVGDRSNNV-VKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGIS 281
Query: 253 DNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGT 288
D ++I Q Y + TN V I DV + G+
Sbjct: 282 DYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGS 317
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 148 NTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEA 207
NTDG DIS+S ++ + N+++ DDC+A+ +G + I V+ + C GHG+SIGS+G + +
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGKSD- 222
Query: 208 AAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDN-PIIIDQFYCPHE 266
V+ V + + +QNG RIK+ G +G +T+ +I LT++ + + Q Y
Sbjct: 223 NVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGG 282
Query: 267 QCSNETNAVKISDVSYTGIHGT 288
TN VKIS++ + + GT
Sbjct: 283 PTGKPTNGVKISNIKFIKVTGT 304
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 130 SDDATLSNLHISAPESSPN----TDGIDISASQNIHILNSNIATGDDCIAINTGSSQINV 185
SD TL ++ I + N TD DI S + I + + DDC+A+N+G I
Sbjct: 135 SDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYF 193
Query: 186 TGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFN 245
+G C GHG+SIGS+G + + V+ V + T+ + NG+RIKT +G +T+
Sbjct: 194 SGGYCSGGHGLSIGSVGGRSD-NTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYK 252
Query: 246 DITLTDVDN-PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDA-IALNC 299
DITLT + I++ Q Y + S T V I+D +HG+ ++ I ++C
Sbjct: 253 DITLTSIAKYGIVVQQNY--GDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISC 306
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 128 LCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTG 187
L D T+ + NTDG D+SA+ N+ I N + DDCIAIN G + I
Sbjct: 131 LTLDGITVDDFAGDTKNLGHNTDGFDVSAN-NVTIQNCIVKNQDDCIAINDG-NNIRFEN 188
Query: 188 LTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQ-GGSGYARKITFND 246
C GHGISIGS+ V V +K T+ + G+RIK + S +T++
Sbjct: 189 NQCSGGHGISIGSI---ATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDA 245
Query: 247 ITLTDVDN-PIIIDQFYCPHEQCSNETNAVKISDVSYTG 284
T++ + ++I Q Y + N SDV++TG
Sbjct: 246 NTISGIAKYGVLISQSY--PDDVGNPGTGAPFSDVNFTG 282
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 148 NTDGIDISASQNIHILNSNIATGDDCIAINTGS-----SQINVTGL-----TCGPGHG-I 196
N DGI+ SQN+ + N+ TGDDCI G+ Q + G GHG I
Sbjct: 379 NGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAI 438
Query: 197 SIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPI 256
GS A +E++ +N + T GLR K+ G AR +TF + + D+ +
Sbjct: 439 VTGS----HTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVTFRNNAMRDLAKQV 494
Query: 257 II 258
++
Sbjct: 495 MV 496
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 150 DGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAA 209
DGID+ S NI + + + D+C+ + + ++ I V + C G ++GSLG +
Sbjct: 177 DGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD--- 232
Query: 210 VEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCS 269
V ++ +N ++ IK+ GGSG + + + ID ++ +
Sbjct: 233 VTDIVYRNVYTWSSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA 291
Query: 270 NETNAVKISDVS---YTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYS 326
+ V++++++ + G T+ I + CS T C ++ LE I I + + Y
Sbjct: 292 GD--GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELY- 348
Query: 327 TCINAHGK 334
C +A+G
Sbjct: 349 LCRSAYGS 356
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 128 LCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGS----SQI 183
+ S++ + N+ IS+ + PN DGID + + + I TGDD + I +G +I
Sbjct: 219 VLSENVIIRNIEISS--TGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRI 276
Query: 184 NVTG----------LTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQ 233
V ++ G+ IGS + V V +N + LR+KT
Sbjct: 277 GVPSEYILVRDNLVISQASHGGLVIGS----EMSGGVRNVVARNNVYMNVERALRLKTNS 332
Query: 234 GGSGYARKITFNDITLTDVDNPII 257
GY I F D +V +I
Sbjct: 333 RRGGYMENIFFIDNVAVNVSEEVI 356
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 17 NVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNL 76
N+++FGA G+G TD S++F +A + L VP+G FL P + SN+
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELS--KQGGGRLIVPEG-VFLTGPIHLK-----SNI 80
Query: 77 QVQIEGNLIAPEGPSSW 93
++ ++G + P +
Sbjct: 81 ELHVKGTIKFIPDPERY 97
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 18 VMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQ 77
V +FGA GN +DDS A +A NA+ N TL +P G L G SN+
Sbjct: 25 VDDFGANGNDTSDDSNALQRAINAIS-RKPNGGTLLIPNGTYHFL------GIQMKSNVH 77
Query: 78 VQIEGNLIAPEGPSSWKGKDRRSWLY 103
+++E ++I +W G + L+
Sbjct: 78 IRVESDVII---KPTWNGDGKNHRLF 100
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 18 VMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQ 77
V +FGA GN +DDS A +A NA+ N TL +P G L G SN+
Sbjct: 26 VDDFGANGNDTSDDSNALQRAINAIS-RKPNGGTLLIPNGTYHFL------GIQMKSNVH 78
Query: 78 VQIEGNLIAPEGPSSWKGKDRRSWLY 103
+++E ++I +W G + L+
Sbjct: 79 IRVESDVII---KPTWNGDGKNHRLF 101
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 14 MPYNVMNFGAVGNGVTDD 31
M YNV +FGA+G+GV+DD
Sbjct: 1 MDYNVKDFGALGDGVSDD 18
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From
Phanerochaete Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From
Phanerochaete Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From
Phanerochaete Chrysosporium (Lam55a) Gluconolactone
Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From
Phanerochaete Chrysosporium (Lam55a) Gluconolactone
Complex
Length = 758
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 11 PGAMPY--NVMNFGAVGNGVTDDSQAFIKAWNA------VCGDTSNNPTL 52
PG P NV N+GA G+G TDD+ A A NA C T+ P L
Sbjct: 43 PGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPAL 92
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 18 VMNFGAVGNGVTDDSQAFIKA 38
V +GA G+GVTDD +AF KA
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKA 45
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 18 VMNFGAVGNGVTDDSQAFIKA 38
V +GA G+GVTDD +AF KA
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKA 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,044,785
Number of Sequences: 62578
Number of extensions: 454616
Number of successful extensions: 662
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 24
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)