Query 039868
Match_columns 346
No_of_seqs 238 out of 1486
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 2.2E-71 4.8E-76 539.7 42.5 331 12-345 49-423 (443)
2 PLN03010 polygalacturonase 100.0 3.9E-70 8.4E-75 524.2 42.9 333 12-346 43-404 (409)
3 PLN02155 polygalacturonase 100.0 3.2E-70 6.9E-75 523.8 40.9 328 12-346 24-393 (394)
4 PLN02218 polygalacturonase ADP 100.0 5.8E-70 1.3E-74 527.5 41.0 326 9-345 61-431 (431)
5 PLN03003 Probable polygalactur 100.0 5.6E-70 1.2E-74 526.1 40.1 333 11-346 19-390 (456)
6 PLN02188 polygalacturonase/gly 100.0 2.5E-67 5.5E-72 505.8 41.0 325 13-345 34-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 8.7E-51 1.9E-55 384.9 26.3 280 46-334 3-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 7.6E-38 1.6E-42 306.6 23.5 237 10-259 77-405 (542)
9 PF12708 Pectate_lyase_3: Pect 99.9 1E-21 2.2E-26 176.0 19.1 60 15-82 1-61 (225)
10 TIGR03808 RR_plus_rpt_1 twin-a 99.9 8.3E-21 1.8E-25 181.3 21.4 221 7-260 30-292 (455)
11 PLN02218 polygalacturonase ADP 99.8 7.1E-18 1.5E-22 164.2 22.7 159 150-329 216-393 (431)
12 PLN03003 Probable polygalactur 99.8 5.9E-17 1.3E-21 157.6 22.7 160 150-330 162-343 (456)
13 PLN02793 Probable polygalactur 99.8 8E-17 1.7E-21 157.6 23.5 171 134-329 189-379 (443)
14 PLN02155 polygalacturonase 99.8 8.9E-17 1.9E-21 154.9 23.0 150 151-319 170-339 (394)
15 PF00295 Glyco_hydro_28: Glyco 99.8 1.8E-16 3.9E-21 150.5 23.7 161 135-319 105-284 (326)
16 PLN03010 polygalacturonase 99.8 3E-16 6.5E-21 151.6 23.7 171 135-330 170-360 (409)
17 PLN02188 polygalacturonase/gly 99.7 2.5E-16 5.5E-21 152.4 22.9 165 133-319 166-350 (404)
18 PF03718 Glyco_hydro_49: Glyco 99.6 9.1E-14 2E-18 134.5 22.7 229 49-318 232-554 (582)
19 TIGR03805 beta_helix_1 paralle 99.6 1E-12 2.2E-17 124.0 23.4 192 35-252 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 2.7E-11 5.9E-16 119.9 17.2 130 149-290 261-398 (542)
21 COG3866 PelB Pectate lyase [Ca 98.9 1.7E-07 3.6E-12 85.4 19.6 139 76-224 77-230 (345)
22 smart00656 Amb_all Amb_all dom 98.8 3.9E-07 8.4E-12 80.0 16.0 92 131-223 40-144 (190)
23 PRK10123 wcaM putative colanic 98.6 4.6E-07 1E-11 82.0 12.5 214 5-250 24-283 (464)
24 PF12541 DUF3737: Protein of u 98.6 2.9E-07 6.3E-12 82.5 11.0 122 106-255 96-228 (277)
25 TIGR03805 beta_helix_1 paralle 98.5 3.5E-06 7.6E-11 79.7 15.5 130 108-258 32-179 (314)
26 PF13229 Beta_helix: Right han 98.4 3.4E-06 7.4E-11 70.5 11.6 110 131-260 9-121 (158)
27 PF00544 Pec_lyase_C: Pectate 98.3 2.7E-06 5.8E-11 75.3 9.2 93 131-224 46-159 (200)
28 TIGR03808 RR_plus_rpt_1 twin-a 98.3 7.6E-05 1.6E-09 72.5 18.3 165 74-251 115-337 (455)
29 PF07602 DUF1565: Protein of u 98.3 3.7E-05 8.1E-10 69.6 15.1 113 33-169 16-133 (246)
30 PLN02773 pectinesterase 98.3 0.00018 3.9E-09 67.7 20.1 195 26-253 12-213 (317)
31 PLN02480 Probable pectinestera 98.2 0.00013 2.8E-09 69.4 18.8 182 25-252 54-252 (343)
32 PLN02304 probable pectinestera 98.2 0.00029 6.4E-09 67.5 21.0 205 5-251 61-286 (379)
33 PLN02682 pectinesterase family 98.2 0.00034 7.3E-09 67.0 20.0 188 31-252 81-280 (369)
34 PF13229 Beta_helix: Right han 98.1 2.8E-05 6E-10 65.0 10.8 134 150-318 1-137 (158)
35 PF14592 Chondroitinas_B: Chon 98.1 0.00043 9.3E-09 67.1 19.5 254 31-315 3-319 (425)
36 PF12541 DUF3737: Protein of u 98.1 0.00023 5E-09 64.1 16.1 160 99-316 52-223 (277)
37 PF05048 NosD: Periplasmic cop 98.0 0.00022 4.7E-09 64.6 14.5 105 131-257 44-150 (236)
38 PLN02634 probable pectinestera 98.0 0.0014 3.1E-08 62.5 20.3 189 26-252 63-266 (359)
39 PLN02933 Probable pectinestera 98.0 0.0043 9.4E-08 62.2 24.4 185 25-252 224-420 (530)
40 PLN02708 Probable pectinestera 97.9 0.0012 2.6E-08 66.9 20.0 186 25-252 247-449 (553)
41 PF05048 NosD: Periplasmic cop 97.9 0.00025 5.5E-09 64.2 14.0 116 121-260 14-130 (236)
42 PLN02665 pectinesterase family 97.9 0.0028 6E-08 60.9 21.2 185 25-253 74-273 (366)
43 PLN02990 Probable pectinestera 97.9 0.0067 1.4E-07 61.8 24.4 187 25-253 265-463 (572)
44 PLN02432 putative pectinestera 97.9 0.0031 6.8E-08 58.8 20.2 179 25-251 17-204 (293)
45 PLN02488 probable pectinestera 97.9 0.0039 8.4E-08 61.9 21.6 186 25-253 203-400 (509)
46 PLN02301 pectinesterase/pectin 97.9 0.0024 5.2E-08 64.5 20.5 185 25-252 242-438 (548)
47 PLN02671 pectinesterase 97.9 0.0039 8.4E-08 59.6 20.8 190 25-251 65-269 (359)
48 PLN02170 probable pectinestera 97.8 0.0095 2.1E-07 59.7 24.2 187 25-253 231-428 (529)
49 PLN02176 putative pectinestera 97.8 0.0041 8.8E-08 59.1 20.6 183 25-252 45-246 (340)
50 PLN02201 probable pectinestera 97.8 0.0039 8.4E-08 62.6 21.1 186 25-252 212-408 (520)
51 PLN02506 putative pectinestera 97.8 0.0021 4.7E-08 64.7 19.3 186 25-252 238-434 (537)
52 PF01095 Pectinesterase: Pecti 97.8 0.0016 3.5E-08 61.1 17.4 185 30-252 10-202 (298)
53 PLN02916 pectinesterase family 97.8 0.0045 9.8E-08 61.7 21.2 186 25-252 193-392 (502)
54 PRK10531 acyl-CoA thioesterase 97.8 0.0047 1E-07 60.1 20.9 211 24-252 87-336 (422)
55 PF03718 Glyco_hydro_49: Glyco 97.8 0.00037 7.9E-09 68.7 13.2 123 181-316 380-513 (582)
56 PLN02745 Putative pectinestera 97.8 0.0042 9.1E-08 63.4 20.5 185 25-252 291-487 (596)
57 PLN02995 Probable pectinestera 97.7 0.0038 8.2E-08 63.1 19.6 185 25-252 229-427 (539)
58 PLN02713 Probable pectinestera 97.7 0.0039 8.5E-08 63.3 19.8 184 25-252 256-455 (566)
59 PLN02416 probable pectinestera 97.7 0.0035 7.6E-08 63.3 19.3 186 25-252 236-432 (541)
60 PLN03043 Probable pectinestera 97.7 0.006 1.3E-07 61.7 20.7 184 25-252 229-428 (538)
61 PLN02197 pectinesterase 97.7 0.0047 1E-07 62.8 20.0 182 31-252 286-480 (588)
62 PLN02313 Pectinesterase/pectin 97.7 0.0048 1E-07 63.0 20.2 186 25-253 281-478 (587)
63 PLN02484 probable pectinestera 97.7 0.0047 1E-07 63.1 20.0 187 25-252 278-475 (587)
64 PLN02468 putative pectinestera 97.7 0.015 3.3E-07 59.2 23.5 181 31-253 269-461 (565)
65 PLN02497 probable pectinestera 97.7 0.0069 1.5E-07 57.4 19.0 186 25-252 38-239 (331)
66 PLN02217 probable pectinestera 97.7 0.0045 9.7E-08 63.8 18.9 155 25-221 256-416 (670)
67 PLN02314 pectinesterase 97.6 0.007 1.5E-07 61.9 19.9 181 31-253 289-481 (586)
68 PF12218 End_N_terminal: N ter 97.6 7.3E-05 1.6E-09 51.7 3.4 41 23-68 1-41 (67)
69 PF12708 Pectate_lyase_3: Pect 97.5 0.0055 1.2E-07 54.4 16.0 45 133-177 94-141 (225)
70 COG3866 PelB Pectate lyase [Ca 97.4 0.0037 7.9E-08 57.6 13.4 97 148-252 115-229 (345)
71 PF01696 Adeno_E1B_55K: Adenov 97.4 0.014 3E-07 56.1 17.9 51 18-86 46-98 (386)
72 COG4677 PemB Pectin methyleste 97.4 0.0046 1E-07 57.4 14.1 172 30-223 92-286 (405)
73 smart00656 Amb_all Amb_all dom 97.4 0.0053 1.2E-07 53.8 13.7 93 151-252 33-144 (190)
74 PF00544 Pec_lyase_C: Pectate 97.1 0.0022 4.9E-08 56.7 8.0 92 151-252 38-158 (200)
75 COG3420 NosD Nitrous oxidase a 96.9 0.13 2.9E-06 48.2 17.8 67 125-192 123-192 (408)
76 PF03211 Pectate_lyase: Pectat 96.8 0.062 1.4E-06 47.7 14.2 128 131-284 61-194 (215)
77 PRK10123 wcaM putative colanic 96.4 0.099 2.2E-06 48.0 13.4 165 131-317 177-373 (464)
78 PF07602 DUF1565: Protein of u 92.5 4.5 9.7E-05 36.9 13.5 100 152-260 91-196 (246)
79 PLN02698 Probable pectinestera 92.0 2.6 5.7E-05 42.4 12.5 110 131-253 270-386 (497)
80 TIGR03804 para_beta_helix para 91.9 0.22 4.8E-06 32.3 3.3 40 151-191 1-40 (44)
81 PF01696 Adeno_E1B_55K: Adenov 91.7 5.4 0.00012 38.7 13.6 36 131-169 121-156 (386)
82 PLN02773 pectinesterase 90.7 8.1 0.00018 36.6 13.6 79 157-254 101-185 (317)
83 COG3420 NosD Nitrous oxidase a 88.8 6 0.00013 37.5 10.8 59 102-168 123-191 (408)
84 PLN02480 Probable pectinestera 88.2 16 0.00035 35.0 13.8 81 152-252 127-218 (343)
85 PF09251 PhageP22-tail: Salmon 87.6 8.9 0.00019 37.4 11.4 57 181-252 311-367 (549)
86 PF08480 Disaggr_assoc: Disagg 78.5 19 0.00041 31.3 8.7 41 180-225 33-78 (198)
87 PF08480 Disaggr_assoc: Disagg 76.6 42 0.0009 29.2 10.2 103 181-286 2-110 (198)
88 PLN02713 Probable pectinestera 76.5 98 0.0021 31.9 15.6 77 157-252 339-421 (566)
89 PRK10531 acyl-CoA thioesterase 74.8 58 0.0012 32.2 12.2 116 157-290 205-336 (422)
90 PLN02665 pectinesterase family 74.6 84 0.0018 30.5 13.1 79 157-254 153-242 (366)
91 PLN02506 putative pectinestera 73.2 1.2E+02 0.0025 31.2 15.0 77 157-252 318-400 (537)
92 PLN02170 probable pectinestera 72.8 1.2E+02 0.0025 31.1 16.0 77 157-252 312-394 (529)
93 PLN02916 pectinesterase family 71.8 1.2E+02 0.0026 30.8 15.7 75 158-251 277-357 (502)
94 PLN02432 putative pectinestera 69.9 98 0.0021 29.0 12.5 76 158-252 94-174 (293)
95 PLN02217 probable pectinestera 67.5 90 0.0019 32.8 12.3 75 158-251 337-417 (670)
96 PF14592 Chondroitinas_B: Chon 66.8 18 0.00039 35.6 6.8 48 149-198 184-241 (425)
97 PLN02682 pectinesterase family 65.4 1.4E+02 0.003 29.1 13.1 77 157-252 162-249 (369)
98 PLN02497 probable pectinestera 64.6 1.3E+02 0.0029 28.7 12.8 77 157-252 114-203 (331)
99 PLN02176 putative pectinestera 64.5 1.4E+02 0.003 28.7 16.4 77 157-252 121-209 (340)
100 PLN02995 Probable pectinestera 63.2 1.8E+02 0.004 29.8 15.2 76 158-252 312-393 (539)
101 TIGR03804 para_beta_helix para 63.1 13 0.00029 23.7 3.6 34 131-169 8-41 (44)
102 PF09251 PhageP22-tail: Salmon 61.3 79 0.0017 31.1 9.7 74 180-259 263-353 (549)
103 PLN02708 Probable pectinestera 60.4 2.1E+02 0.0045 29.5 13.5 76 157-251 329-410 (553)
104 PLN02304 probable pectinestera 59.3 1.8E+02 0.0039 28.4 13.1 76 158-252 162-248 (379)
105 PLN02468 putative pectinestera 59.1 2E+02 0.0044 29.6 13.0 76 157-251 344-425 (565)
106 PLN02201 probable pectinestera 58.6 1.6E+02 0.0034 30.1 11.9 132 158-317 293-441 (520)
107 PF01095 Pectinesterase: Pecti 58.0 1E+02 0.0022 28.9 10.0 133 157-317 86-235 (298)
108 smart00710 PbH1 Parallel beta- 57.2 12 0.00026 20.1 2.3 19 212-230 3-22 (26)
109 PLN02671 pectinesterase 56.7 1.9E+02 0.0042 27.9 13.2 62 172-252 177-239 (359)
110 PLN02301 pectinesterase/pectin 53.9 1.3E+02 0.0029 30.8 10.6 133 158-317 323-471 (548)
111 PLN02933 Probable pectinestera 52.4 2.8E+02 0.006 28.4 16.0 76 158-252 305-386 (530)
112 PLN02484 probable pectinestera 51.5 1.3E+02 0.0027 31.3 10.1 133 158-317 360-508 (587)
113 PLN02698 Probable pectinestera 51.2 1.2E+02 0.0026 30.7 9.7 133 158-317 270-418 (497)
114 PLN02416 probable pectinestera 49.8 2.9E+02 0.0064 28.3 12.3 77 157-252 316-398 (541)
115 PLN02634 probable pectinestera 49.4 2.5E+02 0.0055 27.1 12.6 76 158-252 149-235 (359)
116 PLN02990 Probable pectinestera 48.0 3.4E+02 0.0073 28.1 13.1 75 158-251 347-427 (572)
117 PLN03043 Probable pectinestera 47.3 3.3E+02 0.0073 27.9 16.0 76 157-251 312-393 (538)
118 PLN02314 pectinesterase 46.5 1.8E+02 0.0039 30.2 10.4 133 157-317 364-508 (586)
119 PLN02313 Pectinesterase/pectin 46.3 1.7E+02 0.0036 30.4 10.1 132 158-316 362-509 (587)
120 PLN02745 Putative pectinestera 44.2 3.9E+02 0.0085 27.8 13.4 76 157-251 371-452 (596)
121 PF10162 G8: G8 domain; Inter 42.5 1E+02 0.0022 24.7 6.5 53 48-119 11-65 (125)
122 PLN02197 pectinesterase 38.5 1.6E+02 0.0035 30.5 8.5 76 157-251 363-444 (588)
123 PLN02488 probable pectinestera 32.8 5.5E+02 0.012 26.2 14.1 76 158-252 284-365 (509)
124 COG0336 TrmD tRNA-(guanine-N1) 27.4 42 0.00092 30.2 2.0 46 15-62 35-94 (240)
125 PF14262 DUF4353: Domain of un 24.6 5.6E+02 0.012 23.6 8.9 77 108-190 97-181 (264)
126 PF05548 Peptidase_M11: Gameto 20.5 50 0.0011 31.3 1.2 56 2-68 10-65 (314)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.2e-71 Score=539.71 Aligned_cols=331 Identities=47% Similarity=0.868 Sum_probs=302.5
Q ss_pred CCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCCC
Q 039868 12 GAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPS 91 (346)
Q Consensus 12 ~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~~ 91 (346)
.++++||+||||+|||++|||+|||+||++||+ +.+|++|+||+|++|++++|.|.++|| ++++|+++|+|+++.+++
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~-~~ggg~v~vP~G~~fl~~~i~l~gpck-s~vtL~l~g~l~~~~d~~ 126 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS-SKVKTRIVIPAGYTFLVRPIDLGGPCK-AKLTLQISGTIIAPKDPD 126 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc-cCCCCEEEECCCceEEEEEEEECCccC-CCeEEEEEEEEEccCChH
Confidence 346899999999999999999999999976898 778999999999669999999988887 899999999999999999
Q ss_pred CCCCCCCcccEEEEeeeceEEEeceEEeCCCcccccc------------c------------------------------
Q 039868 92 SWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKL------------C------------------------------ 129 (346)
Q Consensus 92 ~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~------------~------------------------------ 129 (346)
+|+......||.+.+++|++|+|.|+|||+|+.||.. +
T Consensus 127 ~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~ 206 (443)
T PLN02793 127 VWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT 206 (443)
T ss_pred HccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence 9986555679999999999999999999999999942 0
Q ss_pred -CCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCC
Q 039868 130 -SDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAA 208 (346)
Q Consensus 130 -~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~ 208 (346)
.+||+|++++|.+|..++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+|||+|||++++...+
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~ 286 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWS 286 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCC
Confidence 0889999999999888899999999999999999999999999999999999999999999999999999998876678
Q ss_pred CEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCC-CCCCCCCCceeEEeEEEEeEEE
Q 039868 209 AVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPH-EQCSNETNAVKISDVSYTGIHG 287 (346)
Q Consensus 209 ~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~nI~~~ni~~ 287 (346)
.++||+|+||+|.++.+|++||+|.+++|.|+||+|+||+|+++.+||.|+++|++. ..|....+...|+||+|+||++
T Consensus 287 ~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~G 366 (443)
T PLN02793 287 EVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKG 366 (443)
T ss_pred cEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEE
Confidence 899999999999999999999999998899999999999999999999999999763 3455556778999999999999
Q ss_pred EeccCceEEEEccCCCCeecEEEEeEEEEeCCCCCCcceEEeccccccCCcccCCCCC
Q 039868 288 TSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCL 345 (346)
Q Consensus 288 ~~~~~~~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~~~~~~~~~~ 345 (346)
+.....++.+.|.++.||+||+|+||+++...++ .....|.|++|...++++||||+
T Consensus 367 t~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 367 TSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred EEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCccc
Confidence 9865668999999999999999999999987643 56789999999999988999997
No 2
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.9e-70 Score=524.24 Aligned_cols=333 Identities=49% Similarity=0.918 Sum_probs=302.9
Q ss_pred CCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCC-CCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCC
Q 039868 12 GAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSN-NPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGP 90 (346)
Q Consensus 12 ~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~-gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~ 90 (346)
+++++||+||||+|||++|||+|||+||+++|+ ..+ +++|+||+|++|++++|.|+++|++++++|+++|+|+++.++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~-~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~ 121 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCG-GEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNI 121 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHcc-CCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCCh
Confidence 568999999999999999999999999976786 422 379999999889999999999887678999999999999999
Q ss_pred CCCCCCCCcccEEEEeeeceEEEeceEEeCCCcccccc------c---------------------CCceEEEeEEEEcC
Q 039868 91 SSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKL------C---------------------SDDATLSNLHISAP 143 (346)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~------~---------------------~~nv~i~~~~I~~~ 143 (346)
.+|+......|+.+.+++|++|+|.|+|||+|+.||.. + .+||+|++++|.+|
T Consensus 122 ~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~ 201 (409)
T PLN03010 122 VAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAP 201 (409)
T ss_pred hhccCCCCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCC
Confidence 99975444568999999999999999999999999962 1 18899999999998
Q ss_pred CCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCC
Q 039868 144 ESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNAT 223 (346)
Q Consensus 144 ~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~ 223 (346)
..++|+||||+.+|++|+|+||+|.++||||++|+++.++.|+++.|..+|||+|||+++.++...++||+|+||+|.++
T Consensus 202 ~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 202 ETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred CCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence 88899999999999999999999999999999999999999999999999999999999876677899999999999999
Q ss_pred CceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCC-CCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCC
Q 039868 224 QNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPH-EQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRT 302 (346)
Q Consensus 224 ~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~ 302 (346)
.+|+|||++.+++|.|+||+|+||+|+++++||.|++.|+.. ..|..+++...|+||+|+||+++.....++.|.|.+.
T Consensus 282 ~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~ 361 (409)
T PLN03010 282 TNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAI 361 (409)
T ss_pred CcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCC
Confidence 999999999988999999999999999999999999999873 3355566888999999999999987778999999999
Q ss_pred CCeecEEEEeEEEEeCCCCCCcceEEeccccccCCcccCCCCCC
Q 039868 303 VGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK 346 (346)
Q Consensus 303 ~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~~~~~~~~~~~ 346 (346)
.||+||+|+||+++.+. ++++.+.|.|+.+...+..+||+|+|
T Consensus 362 ~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 362 THCKDVVMDDIDVTMEN-GEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred CCEeceEEEEEEEEecC-CCccceEeeCccccccCCCCCCcccc
Confidence 99999999999999876 34578999999999999999999985
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=3.2e-70 Score=523.77 Aligned_cols=328 Identities=41% Similarity=0.807 Sum_probs=298.2
Q ss_pred CCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCCC
Q 039868 12 GAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPS 91 (346)
Q Consensus 12 ~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~~ 91 (346)
.++++||+||||+|||++|||+|||+||++||+ +++|++|+||+| +|++++|.|+++|| ++++|+++|+|+++.++.
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~-~~gGg~v~vP~G-~yl~g~i~l~gpck-snv~l~l~G~l~~~~d~~ 100 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACG-SASSATVVVPTG-TFLLKVITFGGPCK-SKITFQVAGTVVAPEDYR 100 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcc-cCCCeEEEECCC-cEEEEEEEEcccCC-CCceEEEeeEEECccccc
Confidence 467999999999999999999999999976898 778999999999 99999999999888 899999999999988887
Q ss_pred CCCCCCCcccEEEEeeeceEEEeceEEeCCCccccccc----------C------------------------------C
Q 039868 92 SWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLC----------S------------------------------D 131 (346)
Q Consensus 92 ~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~----------~------------------------------~ 131 (346)
.|.. ...|+.+.+++++.|+| |+|||+|+.||.++ + +
T Consensus 101 ~~~~--~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~ 177 (394)
T PLN02155 101 TFGN--SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCT 177 (394)
T ss_pred cccc--cceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECee
Confidence 7742 23589999999999999 99999999999742 0 8
Q ss_pred ceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEe
Q 039868 132 DATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVE 211 (346)
Q Consensus 132 nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ 211 (346)
||+|++++|.+|.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+||++|||++++.+.++++
T Consensus 178 nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~ 257 (394)
T PLN02155 178 NVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVE 257 (394)
T ss_pred eEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEE
Confidence 88899999999888899999999999999999999999999999999999999999999999999999998776678999
Q ss_pred EEEEEeeEEeCCCceEEEEEecC-CCceEEeEEEEeeEEecCCccEEEEeeeCCC-CCCCCCCCceeEEeEEEEeEEEEe
Q 039868 212 EVHVKNCTLNATQNGLRIKTWQG-GSGYARKITFNDITLTDVDNPIIIDQFYCPH-EQCSNETNAVKISDVSYTGIHGTS 289 (346)
Q Consensus 212 ni~v~n~~~~~~~~gi~i~s~~~-~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~nI~~~ni~~~~ 289 (346)
||+|+||+|.++.+|++||+|.+ ++|.|+||+|+|++|+++++||.|++.|+.. ..|+...+...|+||+|+||+++.
T Consensus 258 nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~ 337 (394)
T PLN02155 258 NVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTS 337 (394)
T ss_pred EEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEe
Confidence 99999999999999999999865 6799999999999999999999999999764 335555567899999999999998
Q ss_pred ccCceEEEEccCCCCeecEEEEeEEEEeCCCCCCcceEEeccccccCCcccCCCCCC
Q 039868 290 ITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK 346 (346)
Q Consensus 290 ~~~~~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~~~~~~~~~~~ 346 (346)
....++.+.|.++.||+||+|+||+++.+. +.+..+.|+||.|...++.+|++|+.
T Consensus 338 ~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 338 ATQEAMKLVCSKSSPCTGITLQDIKLTYNK-GTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred cCCceEEEEeCCCCCEEEEEEEeeEEEecC-CCccCcEEeccEeEEcccCCcccccC
Confidence 767789999999999999999999999875 45668999999999999999999973
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=5.8e-70 Score=527.49 Aligned_cols=326 Identities=44% Similarity=0.817 Sum_probs=297.2
Q ss_pred CCCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecC
Q 039868 9 SYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPE 88 (346)
Q Consensus 9 ~~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~ 88 (346)
+.+..+++||+||||+|||++|||+|||+||++||+ +.|+++|+||+|++|++++|.|+++|+ ++++|+++|+|++++
T Consensus 61 ~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs-~~Ggg~v~vP~G~tyl~~~i~l~gp~k-s~~~l~l~g~L~~s~ 138 (431)
T PLN02218 61 SLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACS-SNGAVNLLVPKGNTYLLKSIQLTGPCK-SIRTVQIFGTLSASQ 138 (431)
T ss_pred ccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhh-cCCCcEEEECCCCeEEEeeeEecCccC-CceEEEEEEEEEeCC
Confidence 344578999999999999999999999999977898 778889999999779999999999888 899999999999999
Q ss_pred CCCCCCCCCCcccEEEEeeeceEEEec--eEEeCCCcccccc----------c-C-------------------------
Q 039868 89 GPSSWKGKDRRSWLYFVNVNGFTVNGN--GEIDGQGSQWWKL----------C-S------------------------- 130 (346)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~~ni~I~G~--G~idg~g~~~~~~----------~-~------------------------- 130 (346)
+.++|+. ...||.+.+++||+|+|. |+|||+|+.||.. . +
T Consensus 139 d~~~y~~--~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w 216 (431)
T PLN02218 139 KRSDYKD--ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI 216 (431)
T ss_pred Chhhccc--cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE
Confidence 9988864 357899999999999997 9999999999952 0 0
Q ss_pred -------CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccC
Q 039868 131 -------DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGK 203 (346)
Q Consensus 131 -------~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~ 203 (346)
+||+|+|++|.+|.+++|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..+|||+|||+++
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~ 296 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGD 296 (431)
T ss_pred EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCC
Confidence 8888889999888888999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEE
Q 039868 204 QGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYT 283 (346)
Q Consensus 204 ~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ 283 (346)
+.+.+.++||+|+||++.++.+|+|||+|++++|.|+||+|+|++|+++++||.|++.|++...|+..+....|+||+|+
T Consensus 297 ~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 297 DNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEE
Confidence 66678999999999999999999999999999999999999999999999999999999886667666678899999999
Q ss_pred eEEEEeccCceEEEEccCCCCeecEEEEeEEEEeCCCCCCcceEEeccccccCCcccCCCCC
Q 039868 284 GIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCL 345 (346)
Q Consensus 284 ni~~~~~~~~~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~~~~~~~~~~ 345 (346)
||+++.....++.+.|.++.||+||+|+||+++.. ...|+||++...|+++| .|.
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC-CCC
Confidence 99999766678999999999999999999999853 46899999999999554 884
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.6e-70 Score=526.10 Aligned_cols=333 Identities=51% Similarity=0.943 Sum_probs=298.1
Q ss_pred CCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCC
Q 039868 11 PGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGP 90 (346)
Q Consensus 11 ~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~ 90 (346)
-.++.+||++|||+|||++|||+|||+||++||+ +.++++|+||+|++|++++|.|+++|+...+++.++|+|+++..
T Consensus 19 ~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~-~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~- 96 (456)
T PLN03003 19 TSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCS-GTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK- 96 (456)
T ss_pred eeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhh-ccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-
Confidence 3567899999999999999999999999987798 77899999999977999999999988733588889999998653
Q ss_pred CCCCCCCCcccEEEEeeeceEEEeceEEeCCCccccccc----------------------------------CCceEEE
Q 039868 91 SSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLC----------------------------------SDDATLS 136 (346)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~----------------------------------~~nv~i~ 136 (346)
..|.+. ...||.+.++++++|+|.|+|||+|+.||... .+||+|+
T Consensus 97 ~~w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~ 175 (456)
T PLN03003 97 GNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTIS 175 (456)
T ss_pred ccccCC-CcceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEE
Confidence 457543 35699999999999999999999999999731 0899999
Q ss_pred eEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEE
Q 039868 137 NLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVK 216 (346)
Q Consensus 137 ~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~ 216 (346)
+++|.+|..++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+|||+|||++++++.+.++||+|+
T Consensus 176 ~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~ 255 (456)
T PLN03003 176 SLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQ 255 (456)
T ss_pred EEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEE
Confidence 99999988889999999999999999999999999999999999999999999999999999999987767889999999
Q ss_pred eeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCCCC---CCCCCCceeEEeEEEEeEEEEeccCc
Q 039868 217 NCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQ---CSNETNAVKISDVSYTGIHGTSITQD 293 (346)
Q Consensus 217 n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~i~nI~~~ni~~~~~~~~ 293 (346)
||+|.++.+|+|||+|.+++|.|+||+|+|++|+++++||.|+++|+.... |....+...|+||+|+||+++.....
T Consensus 256 n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ 335 (456)
T PLN03003 256 NCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEY 335 (456)
T ss_pred eeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccc
Confidence 999999999999999998889999999999999999999999999985321 33344678999999999999887778
Q ss_pred eEEEEccCCCCeecEEEEeEEEEeCCC--CCCcceEEeccccccCCcccCCCCCC
Q 039868 294 AIALNCSRTVGCDNIVLEHIHIASSNS--KEGTYSTCINAHGKCDDSVPSVGCLK 346 (346)
Q Consensus 294 ~~~i~~~~~~~~~ni~~~nv~v~~~~~--~~~~~~~c~nv~~~~~~~~~~~~~~~ 346 (346)
++.+.|.+..||+||+|+||.++.+.. +....+.|.||+|...++.|||+|++
T Consensus 336 ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~ 390 (456)
T PLN03003 336 GVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390 (456)
T ss_pred eEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence 899999999999999999999998732 33578999999999999999999984
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=2.5e-67 Score=505.82 Aligned_cols=325 Identities=43% Similarity=0.786 Sum_probs=290.1
Q ss_pred CccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCC-CceEEEEeeEEEecCCCC
Q 039868 13 AMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKS-SNLQVQIEGNLIAPEGPS 91 (346)
Q Consensus 13 ~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~-s~v~l~~~g~l~~~~~~~ 91 (346)
++++||+||||+|||++|||+|||+||+++|+ ..|+++|+||+| +|++++|.|+++|++ ++++| +|+++++++
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~-~~Ggg~V~vP~G-~yl~g~i~lkgpc~~~s~v~l----~L~~s~d~~ 107 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACA-STGAVTLLIPPG-TYYIGPVQFHGPCTNVSSLTF----TLKAATDLS 107 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhc-cCCCeEEEECCC-eEEEEeEEeCCCcCcceeEEE----EEEcCCCHH
Confidence 46899999999999999999999999977898 778899999999 999999999998862 45555 999999999
Q ss_pred CCCCCCCcccEEEEeeeceEEEeceEEeCCCccccccc------------------------------------------
Q 039868 92 SWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLC------------------------------------------ 129 (346)
Q Consensus 92 ~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~------------------------------------------ 129 (346)
+|+. ...|+.+..++||+|+|.|+|||+|+.||...
T Consensus 108 ~y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~ 185 (404)
T PLN02188 108 RYGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVE 185 (404)
T ss_pred HCCC--ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEc
Confidence 9974 34688888899999999999999999999510
Q ss_pred CCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCC
Q 039868 130 SDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAA 209 (346)
Q Consensus 130 ~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~ 209 (346)
.+||+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+|||+|||.+++...+.
T Consensus 186 ~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~ 265 (404)
T PLN02188 186 CRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGD 265 (404)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCc
Confidence 08888999999988888999999999999999999999999999999999999999999999999999999887766788
Q ss_pred EeEEEEEeeEEeCCCceEEEEEecC--CCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCC-CCCCceeEEeEEEEeEE
Q 039868 210 VEEVHVKNCTLNATQNGLRIKTWQG--GSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCS-NETNAVKISDVSYTGIH 286 (346)
Q Consensus 210 ~~ni~v~n~~~~~~~~gi~i~s~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~i~nI~~~ni~ 286 (346)
++||+|+||+|.++.+|++||+|.+ +.|.++||+|+|++|+++++||.|++.|+....|. ..+....|+||+|+||+
T Consensus 266 V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~ 345 (404)
T PLN02188 266 VTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIR 345 (404)
T ss_pred EEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEE
Confidence 9999999999999999999999975 34899999999999999999999999998754443 23456799999999999
Q ss_pred EEeccCceEEEEccCCCCeecEEEEeEEEEeCCCCCCcceEEeccccccCCcccCCCCC
Q 039868 287 GTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCL 345 (346)
Q Consensus 287 ~~~~~~~~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~~~~~~~~~~ 345 (346)
++.....++.+.|.++.||+||+|+||+++.+.+.....+.|+||++...|..+||+|.
T Consensus 346 gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 346 GTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 99876778999999999999999999999987544456799999999999999999994
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=8.7e-51 Score=384.93 Aligned_cols=280 Identities=40% Similarity=0.715 Sum_probs=238.5
Q ss_pred CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCCCCCCCCCCcccEEEEeeeceEEEeceEEeCCCccc
Q 039868 46 TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQW 125 (346)
Q Consensus 46 ~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~ 125 (346)
+.++++|+||+| +|+++++.|++.+. .++++.++|++.++.....|+ ...||.+.+++|+.|+|.|+|||+|+.|
T Consensus 3 ~~~~~~v~vP~g-~~~~~~~~l~~~l~-~~~~~~l~G~~~~~~~~~~~~---~~~~i~~~~~~ni~i~G~G~IDG~G~~w 77 (326)
T PF00295_consen 3 SIGGGTVVVPAG-TYLLGPLFLKSTLH-SDVGLTLDGTINFSYDNWEGP---NSALIYAENAENITITGKGTIDGNGQAW 77 (326)
T ss_dssp EEEEESEEESTS-TEEEEETSEETECE-TTCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--GGGT
T ss_pred CCcCCEEEECCC-CeEEceeEEEcccC-CCeEEEEEEEEEeCCCcccCC---ccEEEEEEceEEEEecCCceEcCchhhh
Confidence 445679999999 99999999986444 688999999999875444443 2678999999999999999999999999
Q ss_pred cccc---------C--------------------------------CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEe
Q 039868 126 WKLC---------S--------------------------------DDATLSNLHISAPESSPNTDGIDISASQNIHILN 164 (346)
Q Consensus 126 ~~~~---------~--------------------------------~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n 164 (346)
|... + +||+|++++|.++...+|+||||+.+|+||+|+|
T Consensus 78 ~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n 157 (326)
T PF00295_consen 78 WDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIEN 157 (326)
T ss_dssp CSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEES
T ss_pred hccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEE
Confidence 9721 0 7888888888887777999999999999999999
Q ss_pred eEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEE
Q 039868 165 SNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITF 244 (346)
Q Consensus 165 ~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~ 244 (346)
|+|.++||||++|+++.||+|+||+|..+||++|||++..+....++||+|+||+|.++.+|++||++++++|.|+||+|
T Consensus 158 ~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f 237 (326)
T PF00295_consen 158 CFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITF 237 (326)
T ss_dssp EEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEE
T ss_pred eecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEE
Confidence 99999999999999888999999999999999999998544345699999999999999999999999988999999999
Q ss_pred EeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCCCCeecEEEEeEEEEeCCCCCCc
Q 039868 245 NDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGT 324 (346)
Q Consensus 245 ~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~ 324 (346)
|||+|+++.+||.|++.|.+...+..++....|+||+|+||+++.....++.+.|.+..||+||+|+||+++. + ..
T Consensus 238 ~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g---~~ 313 (326)
T PF00295_consen 238 ENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G---KK 313 (326)
T ss_dssp EEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---BS
T ss_pred EEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---Cc
Confidence 9999999999999999998754444445667999999999999987667899999999999999999999997 2 56
Q ss_pred ceEEeccccc
Q 039868 325 YSTCINAHGK 334 (346)
Q Consensus 325 ~~~c~nv~~~ 334 (346)
.+.|+|++..
T Consensus 314 ~~~c~nv~~~ 323 (326)
T PF00295_consen 314 PAQCKNVPSG 323 (326)
T ss_dssp ESEEBSCCTT
T ss_pred CeEEECCCCC
Confidence 7999999864
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.6e-38 Score=306.62 Aligned_cols=237 Identities=33% Similarity=0.581 Sum_probs=197.9
Q ss_pred CCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEE-e-eEEEec
Q 039868 10 YPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQI-E-GNLIAP 87 (346)
Q Consensus 10 ~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~-~-g~l~~~ 87 (346)
.+..+.++|++|||+|||.+|+++|||+|| ++|+ +++|++|+||+| +|+.++|.|| |+++|++ + ++|+++
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca-~a~Gg~V~lPaG-tylsg~l~LK-----S~~~L~l~egatl~~~ 148 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAI-DACA-SAGGGTVLLPAG-TYLSGPLFLK-----SNVTLHLAEGATLLAS 148 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHH-Hhhh-hhcCceEEECCc-eeEeeeEEEe-----cccEEEecCCceeeCC
Confidence 346679999999999999999999999999 6888 789999999999 9999999999 9999999 4 499999
Q ss_pred CCCCCCCC---------C-------CCc-------------ccEEEEeeeceE-EEeceEEeCCC----cccccc-----
Q 039868 88 EGPSSWKG---------K-------DRR-------------SWLYFVNVNGFT-VNGNGEIDGQG----SQWWKL----- 128 (346)
Q Consensus 88 ~~~~~~~~---------~-------~~~-------------~~i~~~~~~ni~-I~G~G~idg~g----~~~~~~----- 128 (346)
.++.+|+. . ... .++.....+|.. |.|.++++|++ ..||..
T Consensus 149 ~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~ 228 (542)
T COG5434 149 SNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVE 228 (542)
T ss_pred CChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchh
Confidence 99999983 0 011 122223335555 88888998864 115521
Q ss_pred --------c--------C-----------------------CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec
Q 039868 129 --------C--------S-----------------------DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT 169 (346)
Q Consensus 129 --------~--------~-----------------------~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~ 169 (346)
+ . +|++++|++|.+.... |+|||++.+|+||+|++|+|.+
T Consensus 229 ~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdt 307 (542)
T COG5434 229 TRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDT 307 (542)
T ss_pred hcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEec
Confidence 0 0 5666666666665433 9999999999999999999999
Q ss_pred CCceEEeCCC-----------ceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCc
Q 039868 170 GDDCIAINTG-----------SSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSG 237 (346)
Q Consensus 170 gdD~i~i~~g-----------s~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g 237 (346)
+||||++|++ ++||+|+||+|..+|| +.+|||+ .++++||++|||.|.++.+|||||+..+++|
T Consensus 308 gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~~~~d~GLRikt~~~~gG 383 (542)
T COG5434 308 GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVMDNTDRGLRIKTNDGRGG 383 (542)
T ss_pred CCceEEeecccCCcccccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeeeccCcceeeeeeecccce
Confidence 9999999996 6999999999999998 8899997 7899999999999999999999999999999
Q ss_pred eEEeEEEEeeEEecCCccEEEE
Q 039868 238 YARKITFNDITLTDVDNPIIID 259 (346)
Q Consensus 238 ~v~nI~~~ni~~~~~~~~i~i~ 259 (346)
.++||+|+++++.++..+..|.
T Consensus 384 ~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 384 GVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eEEEEEEecccccCcccceeee
Confidence 9999999999999987655554
No 9
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=1e-21 Score=175.97 Aligned_cols=60 Identities=32% Similarity=0.501 Sum_probs=47.4
Q ss_pred cEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEee-eeeecCCCCCCceEEEEee
Q 039868 15 PYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQ-PTSFQGPCKSSNLQVQIEG 82 (346)
Q Consensus 15 ~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~-~l~l~~~~~~s~v~l~~~g 82 (346)
.+||+||||++||++|||+|||+||+ +.. ..++++|||||| +|+++ +|.++ ++++|+++|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~-~~~-~~~g~~v~~P~G-~Y~i~~~l~~~-----s~v~l~G~g 61 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAID-AAA-AAGGGVVYFPPG-TYRISGTLIIP-----SNVTLRGAG 61 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHH-HHC-STTSEEEEE-SE-EEEESS-EEE------TTEEEEESS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhh-hcc-cCCCeEEEEcCc-EEEEeCCeEcC-----CCeEEEccC
Confidence 47999999999999999999999994 333 457999999999 99996 59998 899999964
No 10
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.87 E-value=8.3e-21 Score=181.25 Aligned_cols=221 Identities=19% Similarity=0.242 Sum_probs=160.5
Q ss_pred ccCCCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEe--eE-
Q 039868 7 SRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIE--GN- 83 (346)
Q Consensus 7 ~~~~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~--g~- 83 (346)
+|.+| .+.+|+++|||++||.+|+|+|||+||++ |+ . ++++|.+|+| +|+.++|.|+ ++++|.++ ++
T Consensus 30 ~p~~p-~r~~dv~~fGa~~dG~td~T~ALQaAIda-Aa-~-gG~tV~Lp~G-~Y~~G~L~L~-----spltL~G~~gAt~ 99 (455)
T TIGR03808 30 APLTS-TLGRDATQYGVRPNSPDDQTRALQRAIDE-AA-R-AQTPLALPPG-VYRTGPLRLP-----SGAQLIGVRGATR 99 (455)
T ss_pred cCCCC-ccCCCHHHcCcCCCCcchHHHHHHHHHHH-hh-c-CCCEEEECCC-ceecccEEEC-----CCcEEEecCCcEE
Confidence 34444 55699999999999999999999999964 43 3 5679999999 9999999999 89999986 22
Q ss_pred EEecCCCCCCCCCCCcccEEEEeeeceEEEeceEEeCCCcccccc-------cCCceEEEeEEEEcCCCCCCCCeeeecC
Q 039868 84 LIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKL-------CSDDATLSNLHISAPESSPNTDGIDISA 156 (346)
Q Consensus 84 l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~-------~~~nv~i~~~~I~~~~~~~~~DGI~i~~ 156 (346)
+.... ...++....+++|+|+|. +|++.|..|... ..++++|++++|..+ ...||.+..
T Consensus 100 ~vIdG---------~~~lIiai~A~nVTIsGL-tIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs----g~FGI~L~~ 165 (455)
T TIGR03808 100 LVFTG---------GPSLLSSEGADGIGLSGL-TLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS----GGNGIWLET 165 (455)
T ss_pred EEEcC---------CceEEEEecCCCeEEEee-EEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC----CcceEEEEc
Confidence 11111 134666777899999998 999998654331 138999999999973 136888988
Q ss_pred cccEEEEeeEEec-CCceEEeCCCceeEEEEeeEEcCC--ceeEEecc------------------------cCCCC---
Q 039868 157 SQNIHILNSNIAT-GDDCIAINTGSSQINVTGLTCGPG--HGISIGSL------------------------GKQGE--- 206 (346)
Q Consensus 157 s~nv~I~n~~i~~-gdD~i~i~~gs~nv~I~n~~~~~~--~gi~igs~------------------------~~~~~--- 206 (346)
|+ ..|.+.+|.. .+..|.+.. +++.+|+++++... +||.|-.. ++++.
T Consensus 166 ~~-~~I~~N~I~g~~~~~I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~ 243 (455)
T TIGR03808 166 VS-GDISGNTITQIAVTAIVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAIN 243 (455)
T ss_pred Cc-ceEecceEeccccceEEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEE
Confidence 88 6666666654 555666655 77888888888754 34554322 11111
Q ss_pred CCCEeEEEEEeeEEeCCC-ceEEEEEecCCCceEEeEEEEeeEEecCCc-cEEEEe
Q 039868 207 AAAVEEVHVKNCTLNATQ-NGLRIKTWQGGSGYARKITFNDITLTDVDN-PIIIDQ 260 (346)
Q Consensus 207 ~~~~~ni~v~n~~~~~~~-~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~-~i~i~~ 260 (346)
--...+++|+++++.++. .|+++.+ .+|+.|++.+++++++ +++...
T Consensus 244 ~~~a~~v~V~gN~I~~~r~dgI~~ns-------ss~~~i~~N~~~~~R~~alhymf 292 (455)
T TIGR03808 244 AFRAGNVIVRGNRIRNCDYSAVRGNS-------ASNIQITGNSVSDVREVALYSEF 292 (455)
T ss_pred EEccCCeEEECCEEeccccceEEEEc-------ccCcEEECcEeeeeeeeEEEEEE
Confidence 123467888888888887 8888866 3678888888888887 777654
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.80 E-value=7.1e-18 Score=164.22 Aligned_cols=159 Identities=21% Similarity=0.349 Sum_probs=126.1
Q ss_pred CeeeecCcccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCC
Q 039868 150 DGIDISASQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNAT 223 (346)
Q Consensus 150 DGI~i~~s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~ 223 (346)
..+++..|+||+|++++|.+ .-|+|.+.+ |+||+|+||++..++. |+|+| +.+||+|+||++..
T Consensus 216 w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~- 285 (431)
T PLN02218 216 IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP- 285 (431)
T ss_pred EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-
Confidence 45888899999999999986 348999987 8999999999998865 99976 35899999999975
Q ss_pred CceEEEEEecCC--CceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEc-c
Q 039868 224 QNGLRIKTWQGG--SGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNC-S 300 (346)
Q Consensus 224 ~~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~-~ 300 (346)
.+|+.|.|.... .+.|+||+++|+++.+..++++|+++ ....+.++||+|+||++.... .++.+.. +
T Consensus 286 GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~---------~Gg~G~v~nI~f~ni~m~~V~-~pI~Idq~Y 355 (431)
T PLN02218 286 GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTY---------QGGSGTASNIIFQNIQMENVK-NPIIIDQDY 355 (431)
T ss_pred CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeec---------CCCCeEEEEEEEEeEEEEccc-ccEEEEeec
Confidence 469999997432 37899999999999999999999985 234679999999999999864 4565542 1
Q ss_pred C----------CCCeecEEEEeEEEEeCCCCCCcceEEe
Q 039868 301 R----------TVGCDNIVLEHIHIASSNSKEGTYSTCI 329 (346)
Q Consensus 301 ~----------~~~~~ni~~~nv~v~~~~~~~~~~~~c~ 329 (346)
. ...++||+|+||+.+.+.. ....+.|+
T Consensus 356 ~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~-~ai~l~cs 393 (431)
T PLN02218 356 CDKSKCTSQQSAVQVKNVVYRNISGTSASD-VAITFNCS 393 (431)
T ss_pred cCCCCCCCCCCCeEEEEEEEEeEEEEecCC-cEEEEEEC
Confidence 1 1238999999999987642 23344454
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.77 E-value=5.9e-17 Score=157.60 Aligned_cols=160 Identities=16% Similarity=0.253 Sum_probs=125.7
Q ss_pred CeeeecCcccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCc-eeEEecccCCCCCCCEeEEEEEeeEEeCC
Q 039868 150 DGIDISASQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGH-GISIGSLGKQGEAAAVEEVHVKNCTLNAT 223 (346)
Q Consensus 150 DGI~i~~s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~-gi~igs~~~~~~~~~~~ni~v~n~~~~~~ 223 (346)
-.+++..|++|+|++++|.+. -|+|.+.+ |+||+|+||++..++ .|+|++ +.+||+|+||++...
T Consensus 162 w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~G 232 (456)
T PLN03003 162 AHIHISECNYVTISSLRINAPESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGPG 232 (456)
T ss_pred EEEEEeccccEEEEEEEEeCCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEECC
Confidence 347888899999999999862 48899977 899999999999885 499976 358999999999764
Q ss_pred CceEEEEEecCC--CceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEcc-
Q 039868 224 QNGLRIKTWQGG--SGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCS- 300 (346)
Q Consensus 224 ~~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~- 300 (346)
+||.|.|.... .+.|+||+++|+++.+..++++|+++. ...+.++||+|+||++.... .++.+...
T Consensus 233 -HGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~---------Gg~G~v~nItf~nI~m~nV~-~pI~Idq~Y 301 (456)
T PLN03003 233 -HGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQ---------GGSGYARMITFNGITLDNVE-NPIIIDQFY 301 (456)
T ss_pred -CCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeC---------CCCeEEEEEEEEeEEecCcc-ceEEEEccc
Confidence 69999997432 267999999999999999999999862 24568999999999998765 46666321
Q ss_pred -------------CCCCeecEEEEeEEEEeCCCCCCcceEEec
Q 039868 301 -------------RTVGCDNIVLEHIHIASSNSKEGTYSTCIN 330 (346)
Q Consensus 301 -------------~~~~~~ni~~~nv~v~~~~~~~~~~~~c~n 330 (346)
....++||+|+||+.+.... ....+.|+.
T Consensus 302 ~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~-~ai~l~Cs~ 343 (456)
T PLN03003 302 NGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSE-YGVDFRCSE 343 (456)
T ss_pred CCCCCCCcccCCCCCcEEEeEEEEeEEEEeCcc-ceEEEEeCC
Confidence 01358999999999886542 234455543
No 13
>PLN02793 Probable polygalacturonase
Probab=99.77 E-value=8e-17 Score=157.56 Aligned_cols=171 Identities=19% Similarity=0.303 Sum_probs=130.8
Q ss_pred EEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCC
Q 039868 134 TLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEA 207 (346)
Q Consensus 134 ~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~ 207 (346)
+|++++++++. ...+++..|+||+|++++|.+ .-|+|.+.+ |+||+|+||++..+++ |+|++.
T Consensus 189 ~v~gitl~nSp----~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIaik~~------ 257 (443)
T PLN02793 189 RVENLNVIDSQ----QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCISIVGN------ 257 (443)
T ss_pred EEECeEEEcCC----CeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEEecCC------
Confidence 34555565532 334888899999999999986 248999987 8999999999998864 999752
Q ss_pred CCEeEEEEEeeEEeCCCceEEEEEecC--CCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeE
Q 039868 208 AAVEEVHVKNCTLNATQNGLRIKTWQG--GSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGI 285 (346)
Q Consensus 208 ~~~~ni~v~n~~~~~~~~gi~i~s~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni 285 (346)
.+||+|+||++... +||.|.|... ..+.|+||+++|+++.+..++++|+++. ...+.++||+|+||
T Consensus 258 --s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~---------g~~G~v~nItf~ni 325 (443)
T PLN02793 258 --SSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ---------GGSGNASKITFQNI 325 (443)
T ss_pred --cCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC---------CCCEEEEEEEEEeE
Confidence 58999999999765 5899999743 2377999999999999999999999862 24568999999999
Q ss_pred EEEeccCceEEEEc---cCC---------CCeecEEEEeEEEEeCCCCCCcceEEe
Q 039868 286 HGTSITQDAIALNC---SRT---------VGCDNIVLEHIHIASSNSKEGTYSTCI 329 (346)
Q Consensus 286 ~~~~~~~~~~~i~~---~~~---------~~~~ni~~~nv~v~~~~~~~~~~~~c~ 329 (346)
++.... .++.+.. ... ..++||+|+||+.+.... ....+.|+
T Consensus 326 ~m~nv~-~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~-~ai~l~cs 379 (443)
T PLN02793 326 FMENVS-NPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATE-EAIKFACS 379 (443)
T ss_pred EEecCC-ceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEccc-ccEEEEeC
Confidence 998875 4565543 111 248999999999887531 23344443
No 14
>PLN02155 polygalacturonase
Probab=99.77 E-value=8.9e-17 Score=154.90 Aligned_cols=150 Identities=14% Similarity=0.243 Sum_probs=118.7
Q ss_pred eeeecCcccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCc-eeEEecccCCCCCCCEeEEEEEeeEEeCCC
Q 039868 151 GIDISASQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGH-GISIGSLGKQGEAAAVEEVHVKNCTLNATQ 224 (346)
Q Consensus 151 GI~i~~s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~-gi~igs~~~~~~~~~~~ni~v~n~~~~~~~ 224 (346)
-+++..|+||+|++++|.+. -|+|.+.+ |+||+|+||++..++ .|+|++ +.+||+|+||++.. .
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~-G 239 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGP-G 239 (394)
T ss_pred EEEEECeeeEEEEEEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEEC-C
Confidence 35666788888888888752 27888876 899999999999885 599975 35899999999986 4
Q ss_pred ceEEEEEecC--CCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEc-c-
Q 039868 225 NGLRIKTWQG--GSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNC-S- 300 (346)
Q Consensus 225 ~gi~i~s~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~-~- 300 (346)
+|+.|+|... ..+.|+||+++|+++.+..++++|+++.+ ...+.++||+|+||++.... .++.+.. +
T Consensus 240 hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~--------~~gG~v~nI~f~ni~m~~v~-~pI~i~q~Y~ 310 (394)
T PLN02155 240 HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR--------PSTGFVRNVFFQDLVMKNVE-NPIIIDQNYC 310 (394)
T ss_pred ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC--------CCCEEEEEEEEEeEEEcCcc-ccEEEEeccc
Confidence 6999999732 25889999999999999999999998522 24678999999999999764 4565531 1
Q ss_pred C----------CCCeecEEEEeEEEEeCC
Q 039868 301 R----------TVGCDNIVLEHIHIASSN 319 (346)
Q Consensus 301 ~----------~~~~~ni~~~nv~v~~~~ 319 (346)
+ ...++||+|+||+.+...
T Consensus 311 ~~~~~~~~~~s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 311 PTHEGCPNEYSGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred CCCCCCcCCCCCeEEEEEEEEeeEEEecC
Confidence 1 124899999999998764
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.76 E-value=1.8e-16 Score=150.47 Aligned_cols=161 Identities=24% Similarity=0.344 Sum_probs=126.6
Q ss_pred EEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCC
Q 039868 135 LSNLHISAPESSPNTDGIDISASQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAA 208 (346)
Q Consensus 135 i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~ 208 (346)
|+++++.++. ...+++..|+||+|++++|.+. .|+|.+.+ |+||+|+||++..++. |++++.
T Consensus 105 i~~i~~~nsp----~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iaiks~------- 172 (326)
T PF00295_consen 105 IEGITIRNSP----FWHIHINDCDNVTISNITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAIKSG------- 172 (326)
T ss_dssp EESEEEES-S----SESEEEESEEEEEEESEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEESSE-------
T ss_pred EEeeEecCCC----eeEEEEEccCCeEEcceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCccccccc-------
Confidence 4455566532 2348888999999999999852 48999986 9999999999998865 999774
Q ss_pred CEeEEEEEeeEEeCCCceEEEEEecCCC--ceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEE
Q 039868 209 AVEEVHVKNCTLNATQNGLRIKTWQGGS--GYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIH 286 (346)
Q Consensus 209 ~~~ni~v~n~~~~~~~~gi~i~s~~~~~--g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~ 286 (346)
..||+|+||++... +|+.|.+....+ ..|+||+|+|+++.+..++++|++.. ...+.++||+|+||+
T Consensus 173 -~~ni~v~n~~~~~g-hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~---------~~~G~v~nI~f~ni~ 241 (326)
T PF00295_consen 173 -SGNILVENCTCSGG-HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP---------GGGGYVSNITFENIT 241 (326)
T ss_dssp -ECEEEEESEEEESS-SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET---------TTSEEEEEEEEEEEE
T ss_pred -ccceEEEeEEEecc-ccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec---------ccceEEeceEEEEEE
Confidence 23999999999864 589999974432 36999999999999999999999852 356799999999999
Q ss_pred EEeccCceEEEEcc---------C--CCCeecEEEEeEEEEeCC
Q 039868 287 GTSITQDAIALNCS---------R--TVGCDNIVLEHIHIASSN 319 (346)
Q Consensus 287 ~~~~~~~~~~i~~~---------~--~~~~~ni~~~nv~v~~~~ 319 (346)
+.... .++.+... + ...++||+|+||+.+...
T Consensus 242 ~~~v~-~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 242 MENVK-YPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EEEES-EEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred ecCCc-eEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc
Confidence 99876 66666421 1 235999999999999876
No 16
>PLN03010 polygalacturonase
Probab=99.75 E-value=3e-16 Score=151.64 Aligned_cols=171 Identities=16% Similarity=0.236 Sum_probs=128.3
Q ss_pred EEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCc-eeEEecccCCCCCC
Q 039868 135 LSNLHISAPESSPNTDGIDISASQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGH-GISIGSLGKQGEAA 208 (346)
Q Consensus 135 i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~-gi~igs~~~~~~~~ 208 (346)
|++++++++. .-.+++..|++|+|++++|.+ .-|+|.+.+ |+||+|+||++..++ .|+|++.
T Consensus 170 v~gitl~nsp----~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg------- 237 (409)
T PLN03010 170 INGITSIDSP----KNHISIKTCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIAINSG------- 237 (409)
T ss_pred EeeeEEEcCC----ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEEecCC-------
Confidence 4445555532 334788889999999999975 247888876 899999999999885 5999873
Q ss_pred CEeEEEEEeeEEeCCCceEEEEEecCCC--ceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEE
Q 039868 209 AVEEVHVKNCTLNATQNGLRIKTWQGGS--GYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIH 286 (346)
Q Consensus 209 ~~~ni~v~n~~~~~~~~gi~i~s~~~~~--g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~ 286 (346)
..++.|+++.+... +|+.|++....+ ..|+||+|+|+++.+..++++|+++. ...+.++||+|+||+
T Consensus 238 -s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~---------G~~G~v~nItf~nI~ 306 (409)
T PLN03010 238 -SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQ---------GGQGYARNISFENIT 306 (409)
T ss_pred -CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEec---------CCCEEEEEeEEEeEE
Confidence 24677777777654 599999974322 56999999999999999999999862 245789999999999
Q ss_pred EEeccCceEEEEc-c--C---------CCCeecEEEEeEEEEeCCCCCCcceEEec
Q 039868 287 GTSITQDAIALNC-S--R---------TVGCDNIVLEHIHIASSNSKEGTYSTCIN 330 (346)
Q Consensus 287 ~~~~~~~~~~i~~-~--~---------~~~~~ni~~~nv~v~~~~~~~~~~~~c~n 330 (346)
+.... .++.+.. + . ...++||+|+|++.+... .....+.|+.
T Consensus 307 m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~-~~~i~l~Cs~ 360 (409)
T PLN03010 307 LINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSN-ENAITLKCSA 360 (409)
T ss_pred EecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCC-CccEEEEeCC
Confidence 99864 4666632 1 1 124799999999998764 2355666643
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.75 E-value=2.5e-16 Score=152.37 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=130.1
Q ss_pred eEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCc-eeEEecccCCCC
Q 039868 133 ATLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGH-GISIGSLGKQGE 206 (346)
Q Consensus 133 v~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~-gi~igs~~~~~~ 206 (346)
+.|++++++++. ...+++..|++|+|++++|.+ .-|+|.+.+ |+||+|+||++..++ .|+|++.
T Consensus 166 v~i~gitl~nSp----~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIaiksg----- 235 (404)
T PLN02188 166 TVVRGITSVNSK----FFHIALVECRNFKGSGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCISIGQG----- 235 (404)
T ss_pred EEEeCeEEEcCC----CeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEEEccC-----
Confidence 456677777743 345889999999999999986 348899987 899999999999885 5999763
Q ss_pred CCCEeEEEEEeeEEeCCCceEEEEEecC--CCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEe
Q 039868 207 AAAVEEVHVKNCTLNATQNGLRIKTWQG--GSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTG 284 (346)
Q Consensus 207 ~~~~~ni~v~n~~~~~~~~gi~i~s~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~n 284 (346)
.+||+|+|+++... +|+.|.|... ..+.|+||+++|+++.+..++++|+++.+. .+.+.++||+|+|
T Consensus 236 ---~~nI~I~n~~c~~g-hGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~-------~~~G~v~nI~f~n 304 (404)
T PLN02188 236 ---NSQVTITRIRCGPG-HGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS-------PGKSAATNMTFEN 304 (404)
T ss_pred ---CccEEEEEEEEcCC-CcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC-------CCceEEEEEEEEe
Confidence 36999999999654 6999988632 236799999999999999999999986321 2356899999999
Q ss_pred EEEEeccCceEEEEc-c-----------CCCCeecEEEEeEEEEeCC
Q 039868 285 IHGTSITQDAIALNC-S-----------RTVGCDNIVLEHIHIASSN 319 (346)
Q Consensus 285 i~~~~~~~~~~~i~~-~-----------~~~~~~ni~~~nv~v~~~~ 319 (346)
|++.... .++.+.- + ....++||+|+||+.+...
T Consensus 305 i~m~~v~-~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 305 IVMNNVT-NPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred EEecCcc-ceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 9998764 4665542 1 1234899999999998753
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.62 E-value=9.1e-14 Score=134.48 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=128.0
Q ss_pred CCEEEecCCCEEEeee---eeecCCCCCCc-eEEEEe--eEEEecCCCCCCCCCCCcccEEEEeeeceEEEeceEEeCCC
Q 039868 49 NPTLQVPQGKTFLLQP---TSFQGPCKSSN-LQVQIE--GNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQG 122 (346)
Q Consensus 49 gg~V~iP~G~ty~i~~---l~l~~~~~~s~-v~l~~~--g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g 122 (346)
..+|||+|| +|.++. +.|+ ++ -+++++ +..++ .+......+|+.|.|.|+|.|.-
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L~-----sn~~~VYlApGAyVkG-------------Af~~~~~~~nv~i~G~GVLSGe~ 292 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRLP-----SNTKWVYLAPGAYVKG-------------AFEYTDTQQNVKITGRGVLSGEQ 292 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE------TT--EEEE-TTEEEES--------------EEE---SSEEEEESSSEEE-TT
T ss_pred cceEEeCCc-eEEeCCCccEEEC-----CCccEEEEcCCcEEEE-------------EEEEccCCceEEEEeeEEEcCcc
Confidence 469999999 999974 8887 55 366664 34443 23334578999999999998764
Q ss_pred ccc-------------------------ccc---cCCceEEEeEEEEcCCC--------------------------CCC
Q 039868 123 SQW-------------------------WKL---CSDDATLSNLHISAPES--------------------------SPN 148 (346)
Q Consensus 123 ~~~-------------------------~~~---~~~nv~i~~~~I~~~~~--------------------------~~~ 148 (346)
..| |.. ..+++.+++++|.+|.. -.+
T Consensus 293 Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~q 372 (582)
T PF03718_consen 293 YVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQ 372 (582)
T ss_dssp S-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT
T ss_pred eeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEEec
Confidence 322 110 02677888888887531 368
Q ss_pred CCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-e--eEEecccCCCCCCCEeEEEEEeeEEeCC--
Q 039868 149 TDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGH-G--ISIGSLGKQGEAAAVEEVHVKNCTLNAT-- 223 (346)
Q Consensus 149 ~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~-g--i~igs~~~~~~~~~~~ni~v~n~~~~~~-- 223 (346)
+|||.+. ++-+|+||++++.||+|-+.. .++.|+||++|..+ | +.+|.. ...++||+|+|+.+...
T Consensus 373 tDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 373 TDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp ----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---
T ss_pred cCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeee
Confidence 9999887 677889999999999996654 59999999999653 3 777754 46699999999999875
Q ss_pred -------CceEEEEEecC---C-------CceEEeEEEEeeEEecCC-ccEEEEeeeCCCCCCCCCCCceeEEeEEEEeE
Q 039868 224 -------QNGLRIKTWQG---G-------SGYARKITFNDITLTDVD-NPIIIDQFYCPHEQCSNETNAVKISDVSYTGI 285 (346)
Q Consensus 224 -------~~gi~i~s~~~---~-------~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni 285 (346)
..+|.-.+... . .-.|++++|+|++++..- ..++|... ...+|+.++|+
T Consensus 444 ~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl-------------qn~~nl~ikN~ 510 (582)
T PF03718_consen 444 IWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL-------------QNYDNLVIKNV 510 (582)
T ss_dssp SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S-------------EEEEEEEEEEE
T ss_pred ecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec-------------CCCcceEEEEe
Confidence 23444433222 0 136899999999999854 45666532 23444445554
Q ss_pred EEE-----eccCceEEEEcc------CCCCeecEEEEeEEEEeC
Q 039868 286 HGT-----SITQDAIALNCS------RTVGCDNIVLEHIHIASS 318 (346)
Q Consensus 286 ~~~-----~~~~~~~~i~~~------~~~~~~ni~~~nv~v~~~ 318 (346)
.+. ........+... ......+|.|+|.+|-+.
T Consensus 511 ~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 511 HFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp EECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ecccccCcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 443 111111122111 123478999999988653
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.56 E-value=1e-12 Score=124.05 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=134.1
Q ss_pred HHHHHHHhcCCCCCCCEEEecCCCEEEe-eeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCcccEEEEeeec
Q 039868 35 FIKAWNAVCGDTSNNPTLQVPQGKTFLL-QPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRRSWLYFVNVNG 109 (346)
Q Consensus 35 iq~Ai~~a~~~~~~gg~V~iP~G~ty~i-~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~~~i~~~~~~n 109 (346)
||+|++ +++ .|.+|+||+| +|.+ ++|.+.. ++++|.+.| + |.+..... ...-+.. .+++
T Consensus 1 iQ~Ai~-~A~---~GDtI~l~~G-~Y~~~~~l~I~~----~~Iti~G~g~~~tvid~~~~~~------~~~~i~v-~a~~ 64 (314)
T TIGR03805 1 LQEALI-AAQ---PGDTIVLPEG-VFQFDRTLSLDA----DGVTIRGAGMDETILDFSGQVG------GAEGLLV-TSDD 64 (314)
T ss_pred CHhHHh-hCC---CCCEEEECCC-EEEcceeEEEeC----CCeEEEecCCCccEEecccCCC------CCceEEE-EeCC
Confidence 699995 443 4889999999 9998 6788852 689999865 3 43322110 1223333 4688
Q ss_pred eEEEeceEEeCCCcccccccCCceEEEeEEEEcCCC---CCCCCeeeecCcccEEEEeeEEecC-CceEEeCCCceeEEE
Q 039868 110 FTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPES---SPNTDGIDISASQNIHILNSNIATG-DDCIAINTGSSQINV 185 (346)
Q Consensus 110 i~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~---~~~~DGI~i~~s~nv~I~n~~i~~g-dD~i~i~~gs~nv~I 185 (346)
|+|++..+.+..+...+....++++|+++++.-... ....+||.+..|++++|++|+++.. |.+|.++. +++++|
T Consensus 65 VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v 143 (314)
T TIGR03805 65 VTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVV 143 (314)
T ss_pred eEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEE
Confidence 999887443332332222223899999999974221 1347899999999999999999974 55898876 899999
Q ss_pred EeeEEcCC-ceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCC-ceEEeEEEEeeEEecC
Q 039868 186 TGLTCGPG-HGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGS-GYARKITFNDITLTDV 252 (346)
Q Consensus 186 ~n~~~~~~-~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~-g~v~nI~~~ni~~~~~ 252 (346)
+||+++.. .||.+.. ..++.|+++++.+...|+.+-..++.. -..+++++++.++.+.
T Consensus 144 ~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 144 RNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 99999865 5788743 257899999999888899886544321 2346788888777654
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=2.7e-11 Score=119.94 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=107.1
Q ss_pred CCeeeecCcccEEEEeeEEecCC----ceEEeCCCceeEEEEeeEEcCCce-eEEecccCCC---CCCCEeEEEEEeeEE
Q 039868 149 TDGIDISASQNIHILNSNIATGD----DCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQG---EAAAVEEVHVKNCTL 220 (346)
Q Consensus 149 ~DGI~i~~s~nv~I~n~~i~~gd----D~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~---~~~~~~ni~v~n~~~ 220 (346)
-.++|+..|+|++++|.+|.+.+ |++.+.+ |+||+|++|+|..++. |+++|...-. -.+..++|+|+||+|
T Consensus 261 ~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~ 339 (542)
T COG5434 261 LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYF 339 (542)
T ss_pred cEEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceEEeecccCCcccccccccccEEEeccee
Confidence 36788899999999999998754 4888877 9999999999998754 8988743211 145679999999999
Q ss_pred eCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEec
Q 039868 221 NATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSI 290 (346)
Q Consensus 221 ~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 290 (346)
...+.++.+.++ .+|.|+||++||+.|.+..++++|++... .++.++||+|+++.+...
T Consensus 340 ~~ghG~~v~Gse--~~ggv~ni~ved~~~~~~d~GLRikt~~~---------~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 340 SSGHGGLVLGSE--MGGGVQNITVEDCVMDNTDRGLRIKTNDG---------RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred cccccceEeeee--cCCceeEEEEEeeeeccCcceeeeeeecc---------cceeEEEEEEecccccCc
Confidence 988888888885 45899999999999999999999998632 347899999999988754
No 21
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.7e-07 Score=85.37 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=106.0
Q ss_pred eEEEEeeEEEecCCCCCCCCCCCcccEEEEeeeceEEEece---EEeCCCcccccccCCceEEEeEEEEcCCC-CCCCCe
Q 039868 76 LQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNG---EIDGQGSQWWKLCSDDATLSNLHISAPES-SPNTDG 151 (346)
Q Consensus 76 v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G---~idg~g~~~~~~~~~nv~i~~~~I~~~~~-~~~~DG 151 (346)
+.|.+.|+|.++. +. ...+.+..+.|.+|.|.| ++.|-|...|+. +||.|+|++|..... .++-|+
T Consensus 77 ~ii~v~Gti~~s~-ps-------~~k~~iki~sNkTivG~g~~a~~~g~gl~i~~a--~NVIirNltf~~~~~~d~~~D~ 146 (345)
T COG3866 77 VIIVVKGTITAST-PS-------DKKITIKIGSNKTIVGSGADATLVGGGLKIRDA--GNVIIRNLTFEGFYQGDPNYDA 146 (345)
T ss_pred EEEEEcceEeccC-CC-------CceEEEeeccccEEEeeccccEEEeceEEEEeC--CcEEEEeeEEEeeccCCCCCCc
Confidence 4667788888763 11 113777888999999985 666666666764 999999999997542 134599
Q ss_pred eee-cCcccEEEEeeEEec---------CCceEEeCCCceeEEEEeeEEcCCc-eeEEecccCCCCCCCEeEEEEEeeEE
Q 039868 152 IDI-SASQNIHILNSNIAT---------GDDCIAINTGSSQINVTGLTCGPGH-GISIGSLGKQGEAAAVEEVHVKNCTL 220 (346)
Q Consensus 152 I~i-~~s~nv~I~n~~i~~---------gdD~i~i~~gs~nv~I~n~~~~~~~-gi~igs~~~~~~~~~~~ni~v~n~~~ 220 (346)
|.+ ..++|++|++|++.. +|..+.++.++..|+|++|+|.... ++-+|+........+-.+|++++|.|
T Consensus 147 Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF 226 (345)
T COG3866 147 ISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF 226 (345)
T ss_pred EEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc
Confidence 999 689999999999975 4666889988999999999998654 57777654322246678999999999
Q ss_pred eCCC
Q 039868 221 NATQ 224 (346)
Q Consensus 221 ~~~~ 224 (346)
.+..
T Consensus 227 kn~~ 230 (345)
T COG3866 227 KNLY 230 (345)
T ss_pred cccc
Confidence 9864
No 22
>smart00656 Amb_all Amb_all domain.
Probab=98.78 E-value=3.9e-07 Score=79.96 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=72.5
Q ss_pred CceEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEcCCc-eeE
Q 039868 131 DDATLSNLHISAPESS--PNTDGIDISASQNIHILNSNIATG----------DDCIAINTGSSQINVTGLTCGPGH-GIS 197 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~--~~~DGI~i~~s~nv~I~n~~i~~g----------dD~i~i~~gs~nv~I~n~~~~~~~-gi~ 197 (346)
+||.|++++|+.+... .+.|+|.+.++++|.|++|++..+ |..+.++.++.+|+|++|+|...+ +.-
T Consensus 40 ~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~l 119 (190)
T smart00656 40 SNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVML 119 (190)
T ss_pred ceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEE
Confidence 7999999999985432 467999999999999999999976 556788888999999999997543 577
Q ss_pred EecccCCCCCCCEeEEEEEeeEEeCC
Q 039868 198 IGSLGKQGEAAAVEEVHVKNCTLNAT 223 (346)
Q Consensus 198 igs~~~~~~~~~~~ni~v~n~~~~~~ 223 (346)
+|+..... .....+|++.++.+.+.
T Consensus 120 iG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 120 LGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EccCCCcc-ccccceEEEECcEEcCc
Confidence 77642211 22356899999999775
No 23
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.64 E-value=4.6e-07 Score=82.00 Aligned_cols=214 Identities=23% Similarity=0.314 Sum_probs=126.2
Q ss_pred cCccCCCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEE-e-eeeeecCCCCCCceEEEEee
Q 039868 5 GWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFL-L-QPTSFQGPCKSSNLQVQIEG 82 (346)
Q Consensus 5 ~~~~~~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~-i-~~l~l~~~~~~s~v~l~~~g 82 (346)
-++++.|+...+||.||-+ .|=-++|.+|+. .+.+|++|+|-+-. + ..+.++ .+-||.+.|
T Consensus 24 p~~ra~~~~~~vni~dy~~-----~dwiasfkqaf~-------e~qtvvvpagl~cenint~ifip-----~gktl~v~g 86 (464)
T PRK10123 24 PFARALPARQSVNINDYNP-----HDWIASFKQAFS-------EGQTVVVPAGLVCDNINTGIFIP-----PGKTLHILG 86 (464)
T ss_pred HhhhhcCCCceeehhhcCc-----ccHHHHHHHHhc-------cCcEEEecCccEecccccceEeC-----CCCeEEEEE
Confidence 4678889999999999964 355789999994 26799999992211 1 246666 677888887
Q ss_pred EEEecCCCCCCCCCCCcccEEEEee----------ec---------eEEEeceEEeCCC---ccccccc----CCceEEE
Q 039868 83 NLIAPEGPSSWKGKDRRSWLYFVNV----------NG---------FTVNGNGEIDGQG---SQWWKLC----SDDATLS 136 (346)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~i~~~~~----------~n---------i~I~G~G~idg~g---~~~~~~~----~~nv~i~ 136 (346)
.|++.. +.+++.-++| .| ..|.|. .+.|=| +.|...+ .+|++|+
T Consensus 87 ~l~gng---------rgrfvlqdg~qv~ge~~g~~hnitldvrgsdc~ikgi-amsgfgpvtqiyiggk~prvmrnl~id 156 (464)
T PRK10123 87 SLRGNG---------RGRFVLQDGSQVTGEEGGSMHNITLDVRGSDCTIKGL-AMSGFGPVTQIYIGGKNKRVMRNLTID 156 (464)
T ss_pred EeecCC---------ceeEEEecCCEeecCCCceeeeEEEeeccCceEEeee-eecccCceeEEEEcCCCchhhhccEEc
Confidence 776532 1222222221 22 333331 111111 1122211 2899999
Q ss_pred eEEEEcCCCCCCCCeeeecCcccEEEEeeEEec-CCceE----EeCCCceeEEEEeeE-----EcCC---ceeEEecccC
Q 039868 137 NLHISAPESSPNTDGIDISASQNIHILNSNIAT-GDDCI----AINTGSSQINVTGLT-----CGPG---HGISIGSLGK 203 (346)
Q Consensus 137 ~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~-gdD~i----~i~~gs~nv~I~n~~-----~~~~---~gi~igs~~~ 203 (346)
++++....++--..|+|-.- ..++|.||+|.. ..|+| ++. -++++|++-. |.++ .||.||-.|.
T Consensus 157 ~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnvain--dr~ilisdhvie~inctngkinwgigiglags 233 (464)
T PRK10123 157 NLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVAIN--DRDILISDHVIERINCTNGKINWGIGIGLAGS 233 (464)
T ss_pred cEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEEec--ccceeeehheheeecccCCcccceeeeeeccc
Confidence 99998755433334454332 567888999875 33444 332 3566665543 3333 4677764442
Q ss_pred -----CCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEe
Q 039868 204 -----QGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLT 250 (346)
Q Consensus 204 -----~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~ 250 (346)
+++.+.++|..+.|++-.++..-+-+. .+..-.++||.-+||+-+
T Consensus 234 tydn~ype~q~vknfvvanitgs~crqlvhve--ngkhfvirnvkaknitpd 283 (464)
T PRK10123 234 TYDNNYPEDQAVKNFVVANITGSDCRQLIHVE--NGKHFVIRNIKAKNITPD 283 (464)
T ss_pred cccCCCchhhhhhhEEEEeccCcChhheEEec--CCcEEEEEeeeccccCCC
Confidence 345678888888888876665444332 233345777777777643
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.64 E-value=2.9e-07 Score=82.48 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=73.6
Q ss_pred eeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCC-----CCCeee------ecCcccEEEEeeEEecCCceE
Q 039868 106 NVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSP-----NTDGID------ISASQNIHILNSNIATGDDCI 174 (346)
Q Consensus 106 ~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~-----~~DGI~------i~~s~nv~I~n~~i~~gdD~i 174 (346)
.+++++++.. .|.-....+|.| ++|+|+|+++....-.. .-|++. +++|+||.|+|+++.+.| +
T Consensus 96 ~~~~i~L~nv-~~~~A~Et~W~c--~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD-A- 170 (277)
T PF12541_consen 96 ECSNITLENV-DIPDADETLWNC--RGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD-A- 170 (277)
T ss_pred cccCcEEEee-EeCCCcccCEEe--CCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc-c-
Confidence 3556666653 343334567777 77777777774321111 123333 334777788877777655 2
Q ss_pred EeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCc
Q 039868 175 AINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDN 254 (346)
Q Consensus 175 ~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~ 254 (346)
... |+||+|.|+.+.+- =++.- .+|+++.||++.+.+ |+ -+++|++++|++|.++.-
T Consensus 171 -FWn-~eNVtVyDS~i~GE-YLgW~----------SkNltliNC~I~g~Q-pL---------CY~~~L~l~nC~~~~tdl 227 (277)
T PF12541_consen 171 -FWN-CENVTVYDSVINGE-YLGWN----------SKNLTLINCTIEGTQ-PL---------CYCDNLVLENCTMIDTDL 227 (277)
T ss_pred -ccc-CCceEEEcceEeee-EEEEE----------cCCeEEEEeEEeccC-cc---------EeecceEEeCcEeeccee
Confidence 333 77888887776321 12222 368888888887655 33 467888899998886654
Q ss_pred c
Q 039868 255 P 255 (346)
Q Consensus 255 ~ 255 (346)
+
T Consensus 228 a 228 (277)
T PF12541_consen 228 A 228 (277)
T ss_pred e
Confidence 3
No 25
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.52 E-value=3.5e-06 Score=79.69 Aligned_cols=130 Identities=24% Similarity=0.342 Sum_probs=95.7
Q ss_pred eceEEEece----EEeCCCccc----ccccCCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEe--------cCC
Q 039868 108 NGFTVNGNG----EIDGQGSQW----WKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIA--------TGD 171 (346)
Q Consensus 108 ~ni~I~G~G----~idg~g~~~----~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~--------~gd 171 (346)
++|+|+|.| +|++.++.. .....++|+|++++|... ..+||.+..|++++|+++++. ++.
T Consensus 32 ~~Iti~G~g~~~tvid~~~~~~~~~~i~v~a~~VtI~~ltI~~~----~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~ 107 (314)
T TIGR03805 32 DGVTIRGAGMDETILDFSGQVGGAEGLLVTSDDVTLSDLAVENT----KGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGA 107 (314)
T ss_pred CCeEEEecCCCccEEecccCCCCCceEEEEeCCeEEEeeEEEcC----CCCeEEEeCCCCEEEEeeEEEeccCccccCCc
Confidence 567777754 355544310 111238999999999873 457999999999999999996 456
Q ss_pred ceEEeCCCceeEEEEeeEEcCCc--eeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEE
Q 039868 172 DCIAINTGSSQINVTGLTCGPGH--GISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITL 249 (346)
Q Consensus 172 D~i~i~~gs~nv~I~n~~~~~~~--gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~ 249 (346)
++|.+.. |++++|++|++.+.. ||.++. .++++|+||++.+...||.+... .++.+++.++
T Consensus 108 ~GI~~~~-s~~v~I~~n~i~g~~d~GIyv~~---------s~~~~v~nN~~~~n~~GI~i~~S-------~~~~v~~N~~ 170 (314)
T TIGR03805 108 YGIYPVE-STNVLVEDSYVRGASDAGIYVGQ---------SQNIVVRNNVAEENVAGIEIENS-------QNADVYNNIA 170 (314)
T ss_pred ceEEEec-cCCEEEECCEEECCCcccEEECC---------CCCeEEECCEEccCcceEEEEec-------CCcEEECCEE
Confidence 7888876 899999999998653 677743 37899999999998889988642 3456666666
Q ss_pred ecCCccEEE
Q 039868 250 TDVDNPIII 258 (346)
Q Consensus 250 ~~~~~~i~i 258 (346)
.+...++.+
T Consensus 171 ~~N~~Gi~v 179 (314)
T TIGR03805 171 TNNTGGILV 179 (314)
T ss_pred eccceeEEE
Confidence 655556665
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.42 E-value=3.4e-06 Score=70.52 Aligned_cols=110 Identities=24% Similarity=0.396 Sum_probs=73.3
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-eeEEecccCCCCCCC
Q 039868 131 DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGH-GISIGSLGKQGEAAA 209 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~-gi~igs~~~~~~~~~ 209 (346)
.+++|++++|.. ...+||.+..+..++|++|+|..+..++.+.. ..++++++|++.... ++.+. .
T Consensus 9 ~~~~i~~~~i~~----~~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~~---------~ 74 (158)
T PF13229_consen 9 SNVTIRNCTISN----NGGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYVS---------G 74 (158)
T ss_dssp EC-EEESEEEES----SSSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEECC---------S
T ss_pred cCeEEeeeEEEe----CCCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEEE---------e
Confidence 568888999987 35678999888888999999988777787776 478899999887654 44442 3
Q ss_pred EeEEEEEeeEEeCCCc-eEEEEEecCCCceEEeEEEEeeEEecCC-ccEEEEe
Q 039868 210 VEEVHVKNCTLNATQN-GLRIKTWQGGSGYARKITFNDITLTDVD-NPIIIDQ 260 (346)
Q Consensus 210 ~~ni~v~n~~~~~~~~-gi~i~s~~~~~g~v~nI~~~ni~~~~~~-~~i~i~~ 260 (346)
..+++|++|++.+... ||.+.. ...+++++++++.+.. .++.+..
T Consensus 75 ~~~~~i~~~~i~~~~~~gi~~~~------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 75 SSNITIENNRIENNGDYGIYISN------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp -CS-EEES-EEECSSS-SCE-TC------EECS-EEES-EEECCTTSSCEEEE
T ss_pred cCCceecCcEEEcCCCccEEEec------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 4678888888888765 777742 2456888888888766 6676654
No 27
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.33 E-value=2.7e-06 Score=75.31 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=65.9
Q ss_pred CceEEEeEEEEcC-----------CCCCCCCeeeecCcccEEEEeeEEecC---------CceEEeCCCceeEEEEeeEE
Q 039868 131 DDATLSNLHISAP-----------ESSPNTDGIDISASQNIHILNSNIATG---------DDCIAINTGSSQINVTGLTC 190 (346)
Q Consensus 131 ~nv~i~~~~I~~~-----------~~~~~~DGI~i~~s~nv~I~n~~i~~g---------dD~i~i~~gs~nv~I~n~~~ 190 (346)
+||.|+|++|+.. ......|+|.+..++||.|++|++..+ |..+.++.++.+|+|++|.|
T Consensus 46 ~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f 125 (200)
T PF00544_consen 46 SNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIF 125 (200)
T ss_dssp EEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EE
T ss_pred CeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhc
Confidence 7888888888861 123568999999999999999999865 56688888899999999999
Q ss_pred cCCc-eeEEecccCCCCCCCEeEEEEEeeEEeCCC
Q 039868 191 GPGH-GISIGSLGKQGEAAAVEEVHVKNCTLNATQ 224 (346)
Q Consensus 191 ~~~~-gi~igs~~~~~~~~~~~ni~v~n~~~~~~~ 224 (346)
.+.+ +..+|+........+ .+|++..+.+.++.
T Consensus 126 ~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~~ 159 (200)
T PF00544_consen 126 DNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANTN 159 (200)
T ss_dssp EEEEETCEESSCTTCGGGTT-EEEEEES-EEEEEE
T ss_pred cccccccccCCCCCccccCC-ceEEEEeEEECchh
Confidence 8643 466776422222444 99999999997653
No 28
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.28 E-value=7.6e-05 Score=72.47 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=105.1
Q ss_pred CceEEEEeeEEEecCCCCCCCCCCCcccEEEEeeeceEEEeceEEeCCC-cccccccC----------------------
Q 039868 74 SNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQG-SQWWKLCS---------------------- 130 (346)
Q Consensus 74 s~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g-~~~~~~~~---------------------- 130 (346)
++++|.+- +|..+.. +|.. ....|++.++++++|++. +|.+++ ...|-...
T Consensus 115 ~nVTIsGL-tIdGsG~--dl~~--rdAgI~v~~a~~v~Iedn-~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S 188 (455)
T TIGR03808 115 DGIGLSGL-TLDGGGI--PLPQ--RRGLIHCQGGRDVRITDC-EITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDA 188 (455)
T ss_pred CCeEEEee-EEEeCCC--cccC--CCCEEEEccCCceEEEee-EEEcCCcceEEEEcCcceEecceEeccccceEEEecc
Confidence 55666555 5554332 2221 355788888889999885 565553 33332211
Q ss_pred CceEEEeEEEEcCCC--------------------------------CCCCCeeeecCcccEEEEeeEEecCC-ceEEeC
Q 039868 131 DDATLSNLHISAPES--------------------------------SPNTDGIDISASQNIHILNSNIATGD-DCIAIN 177 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~--------------------------------~~~~DGI~i~~s~nv~I~n~~i~~gd-D~i~i~ 177 (346)
++++|++-+|....+ ...++||++..+.+++|++.+|+..+ |+|-..
T Consensus 189 ~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~n 268 (455)
T TIGR03808 189 LGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGN 268 (455)
T ss_pred CCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEE
Confidence 355555555544322 34577888888888888888888888 888887
Q ss_pred CCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCC--ceEEeEEEEeeEEec
Q 039868 178 TGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGS--GYARKITFNDITLTD 251 (346)
Q Consensus 178 ~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~--g~v~nI~~~ni~~~~ 251 (346)
+ ++|+.|++++|.+-.=+++-++- ..+--.|+|+++.+...|+.+-.+.+++ ..++.-.++|++-+.
T Consensus 269 s-ss~~~i~~N~~~~~R~~alhymf------s~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 269 S-ASNIQITGNSVSDVREVALYSEF------AFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred c-ccCcEEECcEeeeeeeeEEEEEE------eCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCC
Confidence 7 77888888888743222332221 1121467788888888888888775544 667777788887664
No 29
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.27 E-value=3.7e-05 Score=69.62 Aligned_cols=113 Identities=23% Similarity=0.280 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCCCCEEEecCCCEEEee-----eeeecCCCCCCceEEEEeeEEEecCCCCCCCCCCCcccEEEEee
Q 039868 33 QAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQ-----PTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNV 107 (346)
Q Consensus 33 ~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~-----~l~l~~~~~~s~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~ 107 (346)
.-|++|++. ++ .|.+|++-|| +|.-. ||.++ +.++|.++..-+... ..+...+-
T Consensus 16 ~Ti~~A~~~-a~---~g~~i~l~~G-tY~~~~ge~fPi~i~-----~gVtl~G~~~~kG~~-----------~il~~g~~ 74 (246)
T PF07602_consen 16 KTITKALQA-AQ---PGDTIQLAPG-TYSEATGETFPIIIK-----PGVTLIGNESNKGQI-----------DILITGGG 74 (246)
T ss_pred HHHHHHHHh-CC---CCCEEEECCc-eeccccCCcccEEec-----CCeEEeecccCCCcc-----------eEEecCCc
Confidence 359999954 33 4889999999 99873 57787 789998854221110 00000000
Q ss_pred eceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec
Q 039868 108 NGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT 169 (346)
Q Consensus 108 ~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~ 169 (346)
..+.|.|.+. +-.++...-....+..|++++|.++.. .-.-||.+.++ +.+|+||+|..
T Consensus 75 ~~~~I~g~~~-~~~~qn~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~ 133 (246)
T PF07602_consen 75 TGPTISGGGP-DLSGQNVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTN 133 (246)
T ss_pred eEEeEeccCc-cccceeEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEEC
Confidence 1112222210 000000000001677888888888621 13345666654 66666666654
No 30
>PLN02773 pectinesterase
Probab=98.26 E-value=0.00018 Score=67.73 Aligned_cols=195 Identities=12% Similarity=0.139 Sum_probs=112.6
Q ss_pred CCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEEecCCCCCCCCCCCccc
Q 039868 26 NGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLIAPEGPSSWKGKDRRSW 101 (346)
Q Consensus 26 dg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~~~~~~~~~~~~~~~~~ 101 (346)
||.. |=.-||+||+ +++. ....-+|+|.+| +|. ..|.++.. + .+++|.+++ ++..-.+...-...
T Consensus 12 dGsG-df~TIq~Aid-a~P~~~~~~~~I~Ik~G-~Y~-E~V~I~~~-k-~~itl~G~~~~~TiI~~~~~a~~~~~----- 80 (317)
T PLN02773 12 DGSG-DYCTVQDAID-AVPLCNRCRTVIRVAPG-VYR-QPVYVPKT-K-NLITLAGLSPEATVLTWNNTATKIDH----- 80 (317)
T ss_pred CCCC-CccCHHHHHh-hchhcCCceEEEEEeCc-eEE-EEEEECcC-C-ccEEEEeCCCCceEEEccCccccccc-----
Confidence 4433 3678999995 5541 112357999999 998 66666421 1 579998864 33221111100000
Q ss_pred EEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCC--CCeeeecCcccEEEEeeEEecCCceEEeCCC
Q 039868 102 LYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPN--TDGIDISASQNIHILNSNIATGDDCIAINTG 179 (346)
Q Consensus 102 i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~--~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~g 179 (346)
.. .. ...|.|+... ..++.. .+++.++|++|.|...... .-.+.+. +..+.+.+|.|....|-+-.+.
T Consensus 81 ---~~-~~-~~~g~gT~~S--aTv~v~-a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~- 150 (317)
T PLN02773 81 ---HQ-AS-RVIGTGTFGC--GTVIVE-GEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHY- 150 (317)
T ss_pred ---cc-cc-cccCcCccCc--eEEEEE-CCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCC-
Confidence 00 00 0011111100 111111 1889999999999643222 2334444 5899999999999888877764
Q ss_pred ceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCC-ceEEeEEEEeeEEecCC
Q 039868 180 SSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGS-GYARKITFNDITLTDVD 253 (346)
Q Consensus 180 s~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~-g~v~nI~~~ni~~~~~~ 253 (346)
..-+++||++.+.-.+-+|+ -...|++|++.....| .|....... ..-....|.||++....
T Consensus 151 -gr~yf~~c~IeG~VDFIFG~----------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 151 -GKQYLRDCYIEGSVDFIFGN----------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -CCEEEEeeEEeecccEEeec----------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 36889999998777776765 2579999999765444 232221111 12235789999998643
No 31
>PLN02480 Probable pectinesterase
Probab=98.24 E-value=0.00013 Score=69.44 Aligned_cols=182 Identities=12% Similarity=0.121 Sum_probs=110.0
Q ss_pred CCCCcchHHHHHHHHHHhcCCC--CCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGDT--SNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~~--~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~~~~~~~~~~~~~~~ 99 (346)
.||. .|=.-||+||+ +++ . ...-+|+|.+| +|. ..|.++-. | .+++|.+++ ++..-.+... .
T Consensus 54 ~~G~-g~f~TIQ~AId-aap-~~~~~~~~I~Ik~G-vY~-E~V~I~~~-k-p~ItL~G~g~~~TvI~~~~~~~------~ 120 (343)
T PLN02480 54 INGK-GDFTSVQSAID-AVP-VGNSEWIIVHLRKG-VYR-EKVHIPEN-K-PFIFMRGNGKGRTSIVWSQSSS------D 120 (343)
T ss_pred CCCC-CCcccHHHHHh-hCc-cCCCceEEEEEcCc-EEE-EEEEECCC-C-ceEEEEecCCCCeEEEcccccc------C
Confidence 3453 46788999995 444 2 11225889999 998 77777411 1 578888765 2221111000 0
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC-----CCCCeeee-cCcccEEEEeeEEecCCce
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS-----PNTDGIDI-SASQNIHILNSNIATGDDC 173 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~-----~~~DGI~i-~~s~nv~I~n~~i~~gdD~ 173 (346)
. . ...-++|.+ .+++++|++|.|.... ....++-+ ..++++.+++|.|....|-
T Consensus 121 ~---~-~saTvtV~a----------------~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT 180 (343)
T PLN02480 121 N---A-ASATFTVEA----------------PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT 180 (343)
T ss_pred C---C-CceEEEEEC----------------CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce
Confidence 0 0 111233333 7889999999986321 12345555 3579999999999998887
Q ss_pred EEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc------eEEEEEecCCCceEEeEEEEee
Q 039868 174 IAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN------GLRIKTWQGGSGYARKITFNDI 247 (346)
Q Consensus 174 i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~------gi~i~s~~~~~g~v~nI~~~ni 247 (346)
+-... ..-+++||++.+.-.+=+|. -...|++|++..... | .|.........-....|.||
T Consensus 181 Ly~~~--gR~yf~~C~IeG~VDFIFG~----------g~a~fe~C~i~s~~~~~~~~~G-~ITA~~r~~~~~~GfvF~~C 247 (343)
T PLN02480 181 LFDYK--GRHYYHSCYIQGSIDFIFGR----------GRSIFHNCEIFVIADRRVKIYG-SITAHNRESEDNSGFVFIKG 247 (343)
T ss_pred eEeCC--CCEEEEeCEEEeeeeEEccc----------eeEEEEccEEEEecCCCCCCce-EEEcCCCCCCCCCEEEEECC
Confidence 65543 36788999998766666654 367899999875321 2 23332211123345788999
Q ss_pred EEecC
Q 039868 248 TLTDV 252 (346)
Q Consensus 248 ~~~~~ 252 (346)
++...
T Consensus 248 ~i~g~ 252 (343)
T PLN02480 248 KVYGI 252 (343)
T ss_pred EEccc
Confidence 98753
No 32
>PLN02304 probable pectinesterase
Probab=98.23 E-value=0.00029 Score=67.50 Aligned_cols=205 Identities=12% Similarity=0.151 Sum_probs=119.1
Q ss_pred cCccCCCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee-
Q 039868 5 GWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG- 82 (346)
Q Consensus 5 ~~~~~~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g- 82 (346)
-|||-+|++..--....=...||.. |=.-||+||+ +.+. +...-+|+|.+| +|. ..|.++.. | .+++|.++|
T Consensus 61 ~~~~~~~~~~~~~~~~i~Va~dGsG-df~TIQ~AId-avP~~~~~r~vI~Ik~G-vY~-EkV~Ip~~-K-~~Itl~G~g~ 134 (379)
T PLN02304 61 DFPPDFPPPDTNTTSILCVDPNGCC-NFTTVQSAVD-AVGNFSQKRNVIWINSG-IYY-EKVTVPKT-K-PNITFQGQGF 134 (379)
T ss_pred cCCCCCCchhhccceEEEECCCCCC-CccCHHHHHh-hCcccCCCcEEEEEeCe-EeE-EEEEECCC-C-CcEEEEecCC
Confidence 5677666444222233344456643 3678999995 5541 223457999999 997 55655311 1 789999875
Q ss_pred --E-EEecCCCCCCCCCCCcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC-----CCCCeeee
Q 039868 83 --N-LIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS-----PNTDGIDI 154 (346)
Q Consensus 83 --~-l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~-----~~~DGI~i 154 (346)
+ |......... .. .+ ...-+.+.+ +++..+|++|.|.... .....+-+
T Consensus 135 ~~TiIt~~~~a~~~----~g---T~-~SaTv~v~a----------------~~F~a~nITf~Nta~~~~~g~~~~QAVAL 190 (379)
T PLN02304 135 DSTAIAWNDTAKSA----NG---TF-YSASVQVFA----------------SNFIAKNISFMNVAPIPKPGDVGAQAVAI 190 (379)
T ss_pred CCcEEEccCcccCC----CC---cc-ceEEEEEEC----------------CCeEEEeeEEEecCCCCCCCCCCccEEEE
Confidence 2 2221100000 00 00 011133333 7888999999986421 12223333
Q ss_pred c-CcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCce-------
Q 039868 155 S-ASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNG------- 226 (346)
Q Consensus 155 ~-~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~g------- 226 (346)
. .+..+.+.+|.|....|-+-... ..-+++||++.+.-.+-+|. -...|++|.+....+.
T Consensus 191 ~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~----------g~A~Fe~C~I~s~~~~~~~g~~~ 258 (379)
T PLN02304 191 RIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGD----------ARSLYENCRLISMANPVPPGSKS 258 (379)
T ss_pred EecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEecc----------ceEEEEccEEEEecCCccccccc
Confidence 2 36899999999999888776554 35789999998776776765 2568899988753211
Q ss_pred --EEEEEecC-CCceEEeEEEEeeEEec
Q 039868 227 --LRIKTWQG-GSGYARKITFNDITLTD 251 (346)
Q Consensus 227 --i~i~s~~~-~~g~v~nI~~~ni~~~~ 251 (346)
=.|..... ....-....|.||++..
T Consensus 259 ~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 259 INGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred CceEEEecCCCCCCCCceEEEECCEEcc
Confidence 12332211 11233456799999875
No 33
>PLN02682 pectinesterase family protein
Probab=98.17 E-value=0.00034 Score=67.01 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEEecCCCCCCCCCCCcccEEEEe
Q 039868 31 DSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLIAPEGPSSWKGKDRRSWLYFVN 106 (346)
Q Consensus 31 dT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~~~~~~~~~~~~~~~~~i~~~~ 106 (346)
|=.-||+||+ +++. ....-+|+|.|| +|. ..|.++.. | .+++|.+++ ++..-.+...-....+..+=.+.
T Consensus 81 df~TIQ~AId-avP~~~~~r~vI~Ik~G-~Y~-EkV~Ip~~-k-~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~- 154 (369)
T PLN02682 81 DFTTIQAAID-SLPVINLVRVVIKVNAG-TYR-EKVNIPPL-K-AYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYG- 154 (369)
T ss_pred CccCHHHHHh-hccccCCceEEEEEeCc-eee-EEEEEecc-C-ceEEEEecCCCccEEEeccccCccCCCCCcccccc-
Confidence 4668999995 5541 223458999999 997 55665311 1 689999875 22210111000000000000000
Q ss_pred eeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC-----CCCCeeeec-CcccEEEEeeEEecCCceEEeCCCc
Q 039868 107 VNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS-----PNTDGIDIS-ASQNIHILNSNIATGDDCIAINTGS 180 (346)
Q Consensus 107 ~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~-----~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~gs 180 (346)
..-+.+.+ .++.++|++|.|.... .....+-+. ..+.+.+.+|.|....|-+-.+.
T Consensus 155 SAT~~v~a----------------~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~-- 216 (369)
T PLN02682 155 SATFAVNS----------------PYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL-- 216 (369)
T ss_pred ceEEEEEC----------------CCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--
Confidence 11122222 7889999999986421 112233332 36999999999999888776654
Q ss_pred eeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc-eEEEEEecCCC-ceEEeEEEEeeEEecC
Q 039868 181 SQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN-GLRIKTWQGGS-GYARKITFNDITLTDV 252 (346)
Q Consensus 181 ~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~-gi~i~s~~~~~-g~v~nI~~~ni~~~~~ 252 (346)
..-+++||++.+.-.+-+|. -...|++|++....+ .-.|....... ..-....|.||++...
T Consensus 217 gRqyf~~C~IeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 217 GRHYFKDCYIEGSVDFIFGN----------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred CCEEEEeeEEcccccEEecC----------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 36789999998776766664 367899999974321 11233221111 2235678999999764
No 34
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.13 E-value=2.8e-05 Score=64.96 Aligned_cols=134 Identities=25% Similarity=0.356 Sum_probs=82.1
Q ss_pred CeeeecCcccEEEEeeEEec-CCceEEeCCCceeEEEEeeEEcC-CceeEEecccCCCCCCCEeEEEEEeeEEeCCCceE
Q 039868 150 DGIDISASQNIHILNSNIAT-GDDCIAINTGSSQINVTGLTCGP-GHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGL 227 (346)
Q Consensus 150 DGI~i~~s~nv~I~n~~i~~-gdD~i~i~~gs~nv~I~n~~~~~-~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi 227 (346)
+||.+..+.+++|++|+|.. +.++|.+.. +..++|+||++.. ..|+.+... .++++++|++.+...++
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~-~~~~~i~n~~i~~~~~gi~~~~~---------~~~~i~~~~~~~~~~~i 70 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVSG-SSNITIENCTISNGGYGIYVSGG---------SNVTISNNTISDNGSGI 70 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE-S-SCESEEES-EEESSTTSEEEECC---------ES-EEES-EEES-SEEE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEEc-CCCeEEECeEEECCCcEEEEecC---------CCeEEECeEEEEccceE
Confidence 58999999999999999997 788999877 5678999999987 356777432 78899999999887566
Q ss_pred EEEEecCCCceEEeEEEEeeEEecCCc-cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCCCCee
Q 039868 228 RIKTWQGGSGYARKITFNDITLTDVDN-PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCD 306 (346)
Q Consensus 228 ~i~s~~~~~g~v~nI~~~ni~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ 306 (346)
.+. .-.+++++++++.+... +|.+.. .-++++|++.++......++.+.... -.
T Consensus 71 ~~~-------~~~~~~i~~~~i~~~~~~gi~~~~---------------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~ 125 (158)
T PF13229_consen 71 YVS-------GSSNITIENNRIENNGDYGIYISN---------------SSSNVTIENNTIHNNGGSGIYLEGGS---SP 125 (158)
T ss_dssp ECC-------S-CS-EEES-EEECSSS-SCE-TC---------------EECS-EEES-EEECCTTSSCEEEECC-----
T ss_pred EEE-------ecCCceecCcEEEcCCCccEEEec---------------cCCCEEEEeEEEEeCcceeEEEECCC---CC
Confidence 553 23567788888877655 666542 13345555555554444555665432 12
Q ss_pred cEEEEeEEEEeC
Q 039868 307 NIVLEHIHIASS 318 (346)
Q Consensus 307 ni~~~nv~v~~~ 318 (346)
+++|++.++...
T Consensus 126 ~~~i~~n~i~~~ 137 (158)
T PF13229_consen 126 NVTIENNTISNN 137 (158)
T ss_dssp S-EEECEEEECE
T ss_pred eEEEEEEEEEeC
Confidence 455666666543
No 35
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.11 E-value=0.00043 Score=67.13 Aligned_cols=254 Identities=13% Similarity=0.181 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCC-CCCCceEEEEe----eEEEecCCCCCCCCCCCcccEEEE
Q 039868 31 DSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGP-CKSSNLQVQIE----GNLIAPEGPSSWKGKDRRSWLYFV 105 (346)
Q Consensus 31 dT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~-~~~s~v~l~~~----g~l~~~~~~~~~~~~~~~~~i~~~ 105 (346)
+.++||+||+.|. +|.+|+++.| +|.-..|.+++. .+...++|..+ .+|.+ ...+.+.
T Consensus 3 s~~~lq~Ai~~a~----pGD~I~L~~G-ty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G------------~s~l~i~ 65 (425)
T PF14592_consen 3 SVAELQSAIDNAK----PGDTIVLADG-TYKDVEIVFKGSGTAAKPITLRAENPGKVVITG------------ESNLRIS 65 (425)
T ss_dssp SHHHHHHHHHH------TT-EEEE-SE-EEET-EEEE-S--BTTB-EEEEESSTTSEEEEE------------S-EEEE-
T ss_pred CHHHHHHHHHhCC----CCCEEEECCc-eeecceEEEEecccCCCCEEEEecCCCeEEEec------------ceeEEEE
Confidence 5689999996443 4899999999 998545665531 01134666553 12221 1123333
Q ss_pred eeeceEEEeceEE-eCCCc--ccccc-------cCCceEEEeEEEEcCCCCCCC--Ceeee----cCcccEEEEeeEEec
Q 039868 106 NVNGFTVNGNGEI-DGQGS--QWWKL-------CSDDATLSNLHISAPESSPNT--DGIDI----SASQNIHILNSNIAT 169 (346)
Q Consensus 106 ~~~ni~I~G~G~i-dg~g~--~~~~~-------~~~nv~i~~~~I~~~~~~~~~--DGI~i----~~s~nv~I~n~~i~~ 169 (346)
+ +.++|+|. ++ +|... .+-.. ...+.++.++.|..-.. +.. +...+ ...++-+|++|.|..
T Consensus 66 G-~yl~v~GL-~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~g 142 (425)
T PF14592_consen 66 G-SYLVVSGL-KFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQG 142 (425)
T ss_dssp S-SSEEEES--EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE-
T ss_pred e-eeEEEeCe-EEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeec
Confidence 2 44555553 22 22110 11110 12677888888885211 111 11222 235888999999975
Q ss_pred C---CceEEeC--C-C----ceeEEEEeeEEcC-----Cc---eeEEecccCCCCCCCEeEEEEEeeEEeCCCc---eEE
Q 039868 170 G---DDCIAIN--T-G----SSQINVTGLTCGP-----GH---GISIGSLGKQGEAAAVEEVHVKNCTLNATQN---GLR 228 (346)
Q Consensus 170 g---dD~i~i~--~-g----s~nv~I~n~~~~~-----~~---gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~---gi~ 228 (346)
. .--+.+. . + ..+-+|.+++|.. +. .|+||... ....-.+.+|+++.|..+.. -|+
T Consensus 143 K~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EIIS 219 (425)
T PF14592_consen 143 KTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEIIS 219 (425)
T ss_dssp --SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEEEE
T ss_pred cccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeEEE
Confidence 2 2234433 1 1 2355788888862 22 28887542 12334777888888877652 466
Q ss_pred EEEecCCCceEEeEEEEeeEEecCCccEEEEee----------eCCCCC--CC---CCCCceeEEeEEEEeEEEEeccCc
Q 039868 229 IKTWQGGSGYARKITFNDITLTDVDNPIIIDQF----------YCPHEQ--CS---NETNAVKISDVSYTGIHGTSITQD 293 (346)
Q Consensus 229 i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~----------~~~~~~--~~---~~~~~~~i~nI~~~ni~~~~~~~~ 293 (346)
+||. ... |++.++.+++-.+.+.-. .+.... ++ --+..-.|.|=.|++++++.-...
T Consensus 220 vKS~---~N~-----ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~ 291 (425)
T PF14592_consen 220 VKSS---DNT-----IRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGA 291 (425)
T ss_dssp EESB---T-E-----EES-EEES-SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTS
T ss_pred eecC---Cce-----EeccEEEeccceEEEecCCCceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecc
Confidence 6663 233 444444433333322210 001000 00 012344788888888887653332
Q ss_pred eEEEEccCCC------CeecEEEEeEEE
Q 039868 294 AIALNCSRTV------GCDNIVLEHIHI 315 (346)
Q Consensus 294 ~~~i~~~~~~------~~~ni~~~nv~v 315 (346)
...+.+.+.. .++++.+.+-++
T Consensus 292 ~~v~ng~p~s~ln~y~qv~nv~I~~NT~ 319 (425)
T PF14592_consen 292 LAVMNGVPNSPLNRYDQVKNVLIANNTF 319 (425)
T ss_dssp EE-EEE--BSTTSTT---BSEEEES-EE
T ss_pred eeeccCCCCCCcccccccceeEEecceE
Confidence 2335665433 256666655443
No 36
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.09 E-value=0.00023 Score=64.11 Aligned_cols=160 Identities=18% Similarity=0.322 Sum_probs=87.4
Q ss_pred cccEEEEeeeceEEEeceEEeC--CCcccccccCCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEe
Q 039868 99 RSWLYFVNVNGFTVNGNGEIDG--QGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAI 176 (346)
Q Consensus 99 ~~~i~~~~~~ni~I~G~G~idg--~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i 176 (346)
.||.+ ++++.|+.. ++.- +...|+. +|+.|+|..|.+|.. +-.|+++.++||.|.+.+..++-
T Consensus 52 YP~Wh---~~~~~i~~~-~f~~~aRa~iWYs---~~i~m~d~~i~apK~--------fR~~~~i~L~nv~~~~A~Et~W~ 116 (277)
T PF12541_consen 52 YPLWH---SDNIKIENC-YFTEMARAAIWYS---NNITMKDSVIQAPKM--------FRECSNITLENVDIPDADETLWN 116 (277)
T ss_pred CceEE---ECCeEEEee-EEeecceeeeeEe---CCEEEEeeeccCchH--------hhcccCcEEEeeEeCCCcccCEE
Confidence 44444 466777763 3432 2344555 788888888887642 23466777777777554433222
Q ss_pred CCCceeEEEEeeEEcCCceeEEec----------ccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEe
Q 039868 177 NTGSSQINVTGLTCGPGHGISIGS----------LGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFND 246 (346)
Q Consensus 177 ~~gs~nv~I~n~~~~~~~gi~igs----------~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~n 246 (346)
|++|.++|+.+. +.=+.+.| .|.+ ..++++||.|+|+++..-+ ++ |. .+|||+.|
T Consensus 117 ---c~~i~l~nv~~~-gdYf~m~s~ni~id~l~~~GnY-~Fq~~kNvei~ns~l~sKD-AF----Wn-----~eNVtVyD 181 (277)
T PF12541_consen 117 ---CRGIKLKNVQAN-GDYFFMNSENIYIDNLVLDGNY-SFQYCKNVEIHNSKLDSKD-AF----WN-----CENVTVYD 181 (277)
T ss_pred ---eCCeEEEeEEEe-ceEeeeeccceEEeceEEeCCE-EeeceeeEEEEccEEeccc-cc----cc-----CCceEEEc
Confidence 566666666652 21122211 1111 2466677777777765322 22 22 35666666
Q ss_pred eEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCCCCeecEEEEeEEEE
Q 039868 247 ITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIA 316 (346)
Q Consensus 247 i~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~~~nv~v~ 316 (346)
..+.+ .| -+-.=+||+|-|.++.+. ++-.+ ++|++++|.++.
T Consensus 182 S~i~G---------EY----------LgW~SkNltliNC~I~g~-QpLCY--------~~~L~l~nC~~~ 223 (277)
T PF12541_consen 182 SVING---------EY----------LGWNSKNLTLINCTIEGT-QPLCY--------CDNLVLENCTMI 223 (277)
T ss_pred ceEee---------eE----------EEEEcCCeEEEEeEEecc-CccEe--------ecceEEeCcEee
Confidence 65542 11 122457888888888753 22222 367888888877
No 37
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.99 E-value=0.00022 Score=64.60 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=74.7
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-ceeEEecccCCCCCCC
Q 039868 131 DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPG-HGISIGSLGKQGEAAA 209 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~-~gi~igs~~~~~~~~~ 209 (346)
.+++|++.+|.. +..||++..|++++|+++.+.....+|.+.. +.+.+|+++++... .||.+..
T Consensus 44 ~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s~~~~I~~N~i~~n~~GI~l~~--------- 108 (236)
T PF05048_consen 44 DNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG-SSNNTISNNTISNNGYGIYLYG--------- 108 (236)
T ss_pred CCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-CCCcEEECCEecCCCceEEEee---------
Confidence 778888888876 2578888888888888888887667888776 44558888888743 4676632
Q ss_pred EeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecC-CccEE
Q 039868 210 VEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDV-DNPII 257 (346)
Q Consensus 210 ~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~-~~~i~ 257 (346)
..+.+|+++++.+...||.+... .+.++++.++.+. ..+|.
T Consensus 109 s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 109 SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 23467888888877778877552 4556666666665 66776
No 38
>PLN02634 probable pectinesterase
Probab=97.98 E-value=0.0014 Score=62.46 Aligned_cols=189 Identities=14% Similarity=0.189 Sum_probs=108.7
Q ss_pred CCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEE-ecCCCCCCCCCCCcc
Q 039868 26 NGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLI-APEGPSSWKGKDRRS 100 (346)
Q Consensus 26 dg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~-~~~~~~~~~~~~~~~ 100 (346)
||.. |=.-||+||+ +++. +...-+|+|-|| +|. ..|.++.. | .+++|.++| |+. ....... ....+.+
T Consensus 63 dGsG-df~TIQaAId-a~P~~~~~r~vI~Ik~G-vY~-EkV~Ip~~-k-~~ItL~G~g~~~TiIt~~~~a~~-~~~~g~~ 135 (359)
T PLN02634 63 NGHG-DFRSVQDAVD-SVPKNNTMSVTIKINAG-FYR-EKVVVPAT-K-PYITFQGAGRDVTAIEWHDRASD-RGANGQQ 135 (359)
T ss_pred CCCC-CccCHHHHHh-hCcccCCccEEEEEeCc-eEE-EEEEEcCC-C-CeEEEEecCCCceEEEecccccc-cCCCCcc
Confidence 4432 4678999995 5541 223457999999 987 45555311 1 689999875 322 2111000 0000001
Q ss_pred cEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC-----C--CCCeeeecCcccEEEEeeEEecCCce
Q 039868 101 WLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS-----P--NTDGIDISASQNIHILNSNIATGDDC 173 (346)
Q Consensus 101 ~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~-----~--~~DGI~i~~s~nv~I~n~~i~~gdD~ 173 (346)
+-.+ +..-+.+.+ +++..+|++|.|.... . ..-.+.+. ++...+.+|.|....|-
T Consensus 136 ~~T~-~SaTv~V~a----------------~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~QDT 197 (359)
T PLN02634 136 LRTY-QTASVTVYA----------------NYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQDT 197 (359)
T ss_pred cccc-cceEEEEEC----------------CCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEecccce
Confidence 1011 111122222 6788888999886421 1 12234444 58899999999998887
Q ss_pred EEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCce-EEEEEecCCC--ceEEeEEEEeeEEe
Q 039868 174 IAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNG-LRIKTWQGGS--GYARKITFNDITLT 250 (346)
Q Consensus 174 i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~g-i~i~s~~~~~--g~v~nI~~~ni~~~ 250 (346)
+.... ..-+++||++.+.-.+-+|. -...|+||++...... -.|... ++. ..-....|.||++.
T Consensus 198 L~~~~--gR~yf~~CyIeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~g~ITA~-~R~~~~~~~GfvF~~C~vt 264 (359)
T PLN02634 198 LCDDA--GRHYFKECYIEGSIDFIFGN----------GRSMYKDCELHSIASRFGSIAAH-GRTCPEEKTGFAFVGCRVT 264 (359)
T ss_pred eeeCC--CCEEEEeeEEcccccEEcCC----------ceEEEeccEEEEecCCCcEEEeC-CCCCCCCCcEEEEEcCEEc
Confidence 76554 36889999998776666664 2567899998754221 123222 221 23356789999997
Q ss_pred cC
Q 039868 251 DV 252 (346)
Q Consensus 251 ~~ 252 (346)
..
T Consensus 265 g~ 266 (359)
T PLN02634 265 GT 266 (359)
T ss_pred CC
Confidence 63
No 39
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.97 E-value=0.0043 Score=62.25 Aligned_cols=185 Identities=10% Similarity=0.172 Sum_probs=112.0
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +++. ....-+|+|-+| +|. ..|.++-. | .+++|.++| | |.......+
T Consensus 224 ~dGs-G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~~itl~G~g~~~TiIt~~~~~~d------- 290 (530)
T PLN02933 224 IDGT-GNFTTINEAVS-AAPNSSETRFIIYIKGG-EYF-ENVELPKK-K-TMIMFIGDGIGKTVIKANRSRID------- 290 (530)
T ss_pred CCCC-CCccCHHHHHH-hchhcCCCcEEEEEcCc-eEE-EEEEecCC-C-ceEEEEEcCCCCcEEEeCCccCC-------
Confidence 3443 34668999995 5541 223468999999 998 66666421 2 688888875 2 222111000
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+-.+ +..-+.+.| +++..+|++|.|.........+-+. .+..+.+.+|.|....|-+-..+
T Consensus 291 g~~T~-~SaT~~v~a----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~ 353 (530)
T PLN02933 291 GWSTF-QTATVGVKG----------------KGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS 353 (530)
T ss_pred CCccc-cceEEEEEC----------------CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC
Confidence 00000 011122333 7889999999986543333444443 36899999999999888776655
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
+ .-++++|++.+.-.+=+|. -...|+||.+.-.. ..-.|... ++. ..-..+.|.||++...
T Consensus 354 ~--Rqyy~~C~IeGtVDFIFG~----------a~avFq~C~i~~~~~~~~~~~~iTAq-~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 354 A--KQFYRECDIYGTIDFIFGN----------AAVVFQNCSLYARKPNPNHKIAFTAQ-SRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred C--ceEEEeeEEecccceeccC----------ceEEEeccEEEEeccCCCCceEEEec-CCCCCCCCceEEEEeeEEecC
Confidence 3 4589999998776766665 25688889886421 11233332 221 2335688999999764
No 40
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.94 E-value=0.0012 Score=66.87 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=113.8
Q ss_pred CCCCcchHHHHHHHHHHhcCC--CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EE-EecCCCCCCCCCCC
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD--TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NL-IAPEGPSSWKGKDR 98 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~--~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l-~~~~~~~~~~~~~~ 98 (346)
.||. -|=.-||+||+ +.+. ....-+|+|.+| +|. ..|.++-. | .+++|.++| |+ ...... ...
T Consensus 247 ~dGs-g~f~TIq~Av~-a~p~~~~~~r~vI~vk~G-vY~-E~V~i~~~-k-~~v~l~G~g~~~TiIt~~~~~-~~~---- 315 (553)
T PLN02708 247 KDGN-CCYKTVQEAVN-AAPDNNGDRKFVIRIKEG-VYE-ETVRVPLE-K-KNVVFLGDGMGKTVITGSLNV-GQP---- 315 (553)
T ss_pred CCCC-CCccCHHHHHH-hhhhccCCccEEEEEeCc-eEE-eeeeecCC-C-ccEEEEecCCCceEEEecCcc-CCC----
Confidence 3453 24677999995 4541 123459999999 998 44554311 2 699999876 22 221111 000
Q ss_pred cccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeC
Q 039868 99 RSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAIN 177 (346)
Q Consensus 99 ~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~ 177 (346)
.+-.+ ..--+.+.| +++..+|++|.|.........+-+. .++.+.+.+|.|....|-+-.+
T Consensus 316 -g~~T~-~saT~~v~~----------------~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~ 377 (553)
T PLN02708 316 -GISTY-NTATVGVLG----------------DGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAH 377 (553)
T ss_pred -CcCcc-ceEEEEEEc----------------CCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeC
Confidence 00001 011133333 7889999999997543333444443 4689999999999988877766
Q ss_pred CCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC--------ceEEEEEecCCC--ceEEeEEEEee
Q 039868 178 TGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ--------NGLRIKTWQGGS--GYARKITFNDI 247 (346)
Q Consensus 178 ~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~--------~gi~i~s~~~~~--g~v~nI~~~ni 247 (346)
+ ..-++++|++.+.-.+=+|. -.+.|+||++.-.. ..-.|... ++. ..-..+.|.||
T Consensus 378 ~--~rq~y~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~C 444 (553)
T PLN02708 378 S--LRQFYKSCRIQGNVDFIFGN----------SAAVFQDCAILIAPRQLKPEKGENNAVTAH-GRTDPAQSTGFVFQNC 444 (553)
T ss_pred C--CceEEEeeEEeecCCEEecC----------ceEEEEccEEEEeccccCCCCCCceEEEeC-CCCCCCCCceEEEEcc
Confidence 5 34578999998877777765 37899999997321 11233222 221 33457889999
Q ss_pred EEecC
Q 039868 248 TLTDV 252 (346)
Q Consensus 248 ~~~~~ 252 (346)
++...
T Consensus 445 ~it~~ 449 (553)
T PLN02708 445 LINGT 449 (553)
T ss_pred EEecC
Confidence 99764
No 41
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.94 E-value=0.00025 Score=64.16 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=89.4
Q ss_pred CCcccccccCCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-ceeEEe
Q 039868 121 QGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPG-HGISIG 199 (346)
Q Consensus 121 ~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~-~gi~ig 199 (346)
.|...|.. ++..|++.++.. ..+||.+..+.+++|+++++.....+|.+.. +++++|+++++... .||.+.
T Consensus 14 ~Gi~l~~~--~~~~i~~n~i~~-----~~~gi~~~~s~~~~I~~n~i~~~~~GI~~~~-s~~~~i~~n~i~~n~~Gi~l~ 85 (236)
T PF05048_consen 14 NGIYLWNS--SNNSIENNTISN-----SRDGIYVENSDNNTISNNTISNNRYGIHLMG-SSNNTIENNTISNNGYGIYLM 85 (236)
T ss_pred CcEEEEeC--CCCEEEcCEEEe-----CCCEEEEEEcCCeEEEeeEEECCCeEEEEEc-cCCCEEEeEEEEccCCCEEEE
Confidence 33334444 677788888875 4688988999999999999999888898876 78899999999854 788884
Q ss_pred cccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEe
Q 039868 200 SLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQ 260 (346)
Q Consensus 200 s~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~ 260 (346)
.. .+.+|+++++.+...||.+... .+.++++.++.+...+|++..
T Consensus 86 ~s---------~~~~I~~N~i~~n~~GI~l~~s-------~~~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 86 GS---------SNNTISNNTISNNGYGIYLYGS-------SNNTISNNTISNNGYGIYLSS 130 (236)
T ss_pred cC---------CCcEEECCEecCCCceEEEeeC-------CceEEECcEEeCCCEEEEEEe
Confidence 32 2449999999988888877542 336678888887788888864
No 42
>PLN02665 pectinesterase family protein
Probab=97.92 E-value=0.0028 Score=60.86 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=109.5
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee----EEEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG----NLIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g----~l~~~~~~~~~~~~~~~ 99 (346)
.||.. |=..||+||+ +.+. ....-+|+|.+| +|. ..|.++-. | .+++|.+++ +|........+.
T Consensus 74 ~dG~G-df~TIq~AId-aiP~~~~~r~vI~Ik~G-vY~-EkV~Ip~~-k-p~Itl~G~~~~~tiIt~~~~a~~~g----- 142 (366)
T PLN02665 74 KDGSG-DFKTITDAIK-SIPAGNTQRVIIDIGPG-EYN-EKITIDRS-K-PFVTLYGSPGAMPTLTFDGTAAKYG----- 142 (366)
T ss_pred CCCCC-CccCHHHHHh-hCcccCCceEEEEEeCc-EEE-EEEEecCC-C-CEEEEEecCCCCCEEEECCccCCCC-----
Confidence 34532 4678999995 5541 122357889999 998 55655311 1 688888864 222211110000
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC-------CCCCeeeecCcccEEEEeeEEecCCc
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS-------PNTDGIDISASQNIHILNSNIATGDD 172 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~-------~~~DGI~i~~s~nv~I~n~~i~~gdD 172 (346)
.+. .--+.+.+ +++..+|++|.|.... ...-.+.+. .+...+.||.|....|
T Consensus 143 ---T~~-SaTv~v~a----------------~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QD 201 (366)
T PLN02665 143 ---TVY-SATLIVES----------------DYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQD 201 (366)
T ss_pred ---Ccc-eEEEEEEC----------------CCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccc
Confidence 000 11122222 7889999999986421 122334444 5889999999999888
Q ss_pred eEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCce--EEEEEecCCC-ceEEeEEEEeeEE
Q 039868 173 CIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNG--LRIKTWQGGS-GYARKITFNDITL 249 (346)
Q Consensus 173 ~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~g--i~i~s~~~~~-g~v~nI~~~ni~~ 249 (346)
-+.... ..-++++|++.+.-.+=+|. -...|++|++.....+ -.|....... ..-....|.||++
T Consensus 202 TL~~~~--gr~yf~~CyIeG~VDFIFG~----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~i 269 (366)
T PLN02665 202 TLCDDK--GRHFFKDCYIEGTVDFIFGS----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKV 269 (366)
T ss_pred eeEeCC--CCEEEEeeEEeeccceeccc----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEE
Confidence 776554 36789999998776666654 2558888888754433 2333221111 2234567999999
Q ss_pred ecCC
Q 039868 250 TDVD 253 (346)
Q Consensus 250 ~~~~ 253 (346)
....
T Consensus 270 tg~~ 273 (366)
T PLN02665 270 TGTG 273 (366)
T ss_pred ecCC
Confidence 8754
No 43
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.89 E-value=0.0067 Score=61.76 Aligned_cols=187 Identities=12% Similarity=0.180 Sum_probs=113.6
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|-.-||+||+ +++. +...-+|+|.+| +|. ..+.++.. | .+++|.++| + |........ .
T Consensus 265 ~dGs-G~f~TIq~Av~-a~p~~~~~r~vI~Ik~G-vY~-E~V~i~~~-k-~~i~l~G~g~~~TiIt~~~~~~~------g 332 (572)
T PLN02990 265 QDGS-GQYKTINEALN-AVPKANQKPFVIYIKQG-VYN-EKVDVTKK-M-THVTFIGDGPTKTKITGSLNFYI------G 332 (572)
T ss_pred CCCC-CCCcCHHHHHh-hCcccCCceEEEEEeCc-eeE-EEEEecCC-C-CcEEEEecCCCceEEEeccccCC------C
Confidence 4553 34667999995 5541 223458999999 998 45555421 2 689999876 2 222211100 0
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+=.+ ..--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.++
T Consensus 333 ~~~T~-~saT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~ 395 (572)
T PLN02990 333 KVKTY-LTATVAING----------------DHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS 395 (572)
T ss_pred Cccce-eeeEEEEEc----------------CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC
Confidence 00011 111233333 7889999999986543333444443 46899999999999888766654
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+-+|. -...|+||++.-.. ..-.|... ++. ..-..+.|.||++...
T Consensus 396 --~Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 396 --HRQFFRDCTVSGTVDFIFGD----------AKVVLQNCNIVVRKPMKGQSCMITAQ-GRSDVRESTGLVLQNCHITGE 462 (572)
T ss_pred --CcEEEEeeEEecccceEccC----------ceEEEEccEEEEecCCCCCceEEEeC-CCCCCCCCceEEEEeeEEecC
Confidence 35688999998776666664 35788999986421 11334332 221 2345688999999865
Q ss_pred C
Q 039868 253 D 253 (346)
Q Consensus 253 ~ 253 (346)
.
T Consensus 463 ~ 463 (572)
T PLN02990 463 P 463 (572)
T ss_pred c
Confidence 3
No 44
>PLN02432 putative pectinesterase
Probab=97.88 E-value=0.0031 Score=58.78 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=108.0
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||.. |=.-||+||+ +++. ....-+|+|.+| +|. ..|.++-. + .+++|.+++ + |..... +
T Consensus 17 ~~Gsg-~f~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~-E~V~ip~~-k-~~itl~G~~~~~TvI~~~~~---~------ 81 (293)
T PLN02432 17 QSGKG-DFRKIQDAID-AVPSNNSQLVFIWVKPG-IYR-EKVVVPAD-K-PFITLSGTQASNTIITWNDG---G------ 81 (293)
T ss_pred CCCCC-CccCHHHHHh-hccccCCceEEEEEeCc-eeE-EEEEEecc-C-ceEEEEEcCCCCeEEEecCC---c------
Confidence 34533 4678999995 5541 222457999999 995 45555311 1 688888864 2 211100 0
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
. .+ ...-+.+.+ .++.++|++|.|... .....+-+. ..+.+.+.+|.|....|-+-.+.
T Consensus 82 ~--~~-~saT~~v~a----------------~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~ 141 (293)
T PLN02432 82 D--IF-ESPTLSVLA----------------SDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT 141 (293)
T ss_pred c--cc-cceEEEEEC----------------CCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC
Confidence 0 00 011122222 788999999998643 222333332 35899999999999888776654
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC--ceEEEEEecCC-CceEEeEEEEeeEEec
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ--NGLRIKTWQGG-SGYARKITFNDITLTD 251 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~--~gi~i~s~~~~-~g~v~nI~~~ni~~~~ 251 (346)
..-+++||++.+.-.+-+|+ -...|++|++.... .| .|...... ...-....|.|+++..
T Consensus 142 --gr~yf~~c~I~G~VDFIFG~----------g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 142 --GRHYYRNCYIEGATDFICGN----------AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred --CCEEEEeCEEEecccEEecC----------ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcc
Confidence 35789999998776766665 25788999986421 13 33332111 1223467899999985
No 45
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0039 Score=61.95 Aligned_cols=186 Identities=11% Similarity=0.119 Sum_probs=114.3
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EE-EecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NL-IAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l-~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +++. +...-+|+|.+| +|. ..|.++.. | .+++|.++| ++ .......+ ..
T Consensus 203 ~dGs-G~f~TIq~AI~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~nItliGdg~~~TiIt~n~~~~~-----g~ 271 (509)
T PLN02488 203 KDGS-GKYNTVNAAIA-AAPEHSRKRFVIYIKTG-VYD-EIVRIGST-K-PNLTLIGDGQDSTIITGNLSASN-----GK 271 (509)
T ss_pred CCCC-CCccCHHHHHH-hchhcCCCcEEEEEeCC-eeE-EEEEecCC-C-ccEEEEecCCCceEEEEcccccC-----CC
Confidence 4553 34667999995 5541 223468999999 997 45555311 1 689999875 22 22111100 00
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
. .+. .--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.++
T Consensus 272 ~--T~~-SATv~v~g----------------~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~ 332 (509)
T PLN02488 272 R--TFY-TATVASNG----------------DGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR 332 (509)
T ss_pred C--cee-eEEEEEEc----------------CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC
Confidence 0 111 11133333 7788999999986543334445543 46899999999999888776654
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+-+|. -.+.|+||++.... ..-.|... ++. ..-..+.|.||++...
T Consensus 333 --~RqyyrdC~I~GtVDFIFG~----------a~avFq~C~I~sr~~~~~~~~~ITAq-~R~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 333 --DRQFYRECFITGTVDFICGN----------AAAVFQFCQIVARQPMMGQSNVITAQ-SRESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred --CCEEEEeeEEeeccceEecc----------eEEEEEccEEEEecCCCCCCEEEEeC-CCCCCCCCcEEEEEeeEEecC
Confidence 35789999998776766665 36789999997432 11234333 221 2345688999999865
Q ss_pred C
Q 039868 253 D 253 (346)
Q Consensus 253 ~ 253 (346)
.
T Consensus 400 ~ 400 (509)
T PLN02488 400 S 400 (509)
T ss_pred C
Confidence 4
No 46
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0024 Score=64.49 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=111.3
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +++. ....-+|+|-+| +|. ..|.++-. | .+++|.++| + |.......+ +.
T Consensus 242 ~dGs-G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~-E~V~i~~~-k-~~i~l~G~g~~~TiIt~~~~~~d-----g~ 310 (548)
T PLN02301 242 KDGS-GKYKTVKEAVA-SAPDNSKTRYVIYVKKG-TYK-ENVEIGKK-K-KNLMLVGDGMDSTIITGSLNVID-----GS 310 (548)
T ss_pred CCCC-CCcccHHHHHH-hhhhcCCceEEEEEeCc-eee-EEEEecCC-C-ceEEEEecCCCCcEEEeCCccCC-----CC
Confidence 4553 24678999995 4541 222358999999 997 45555311 1 689998876 2 222111100 00
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
. .+. .--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.++
T Consensus 311 ~--T~~-SaT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~ 371 (548)
T PLN02301 311 T--TFR-SATVAAVG----------------DGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS 371 (548)
T ss_pred C--cee-eEEEEEEC----------------CceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC
Confidence 0 011 11133333 7888999999986543333444443 35899999999999888777665
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc----eEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN----GLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~----gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+=+|. -...|+||++.-... .-.|... ++. ..-..+.|.||++...
T Consensus 372 --~Rqyy~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTAq-gr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 372 --LRQFYRDSYITGTVDFIFGN----------AAVVFQNCKIVARKPMAGQKNMVTAQ-GRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred --CcEEEEeeEEEeccceeccc----------ceeEEeccEEEEecCCCCCCceEEec-CCCCCCCCCEEEEEeeEEecC
Confidence 34589999998776666664 367888888864321 1123222 221 3345788999998764
No 47
>PLN02671 pectinesterase
Probab=97.86 E-value=0.0039 Score=59.63 Aligned_cols=190 Identities=11% Similarity=0.117 Sum_probs=108.7
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee-----E-EEecCCCCCCCCCC
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG-----N-LIAPEGPSSWKGKD 97 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g-----~-l~~~~~~~~~~~~~ 97 (346)
.||.. |=.-||+||+ +++. ....-+|+|-|| +|. ..|.++.. | .+++|.+++ + |.......... ..
T Consensus 65 ~dGsG-df~TIQ~AId-avP~~~~~~~~I~Ik~G-vY~-EkV~I~~~-k-~~Itl~G~g~~~~~TvIt~~~~a~~~~-~~ 137 (359)
T PLN02671 65 KNGGG-DSLTVQGAVD-MVPDYNSQRVKIYILPG-IYR-EKVLVPKS-K-PYISFIGNESRAGDTVISWNDKASDLD-SN 137 (359)
T ss_pred CCCCC-CccCHHHHHH-hchhcCCccEEEEEeCc-eEE-EEEEECCC-C-CeEEEEecCCCCCCEEEEcCCcccccc-cC
Confidence 45533 4678999995 5541 223458999999 997 55655311 1 688888864 2 22211110000 00
Q ss_pred CcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCC----CC--CCCeeeecCcccEEEEeeEEecCC
Q 039868 98 RRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPES----SP--NTDGIDISASQNIHILNSNIATGD 171 (346)
Q Consensus 98 ~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~----~~--~~DGI~i~~s~nv~I~n~~i~~gd 171 (346)
+..+-.+.. --+.+.+ +++..+|++|.|... .. .+-.+.+. .+.+.+.+|.|....
T Consensus 138 g~~~gT~~S-aTv~v~a----------------~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~Q 199 (359)
T PLN02671 138 GFELGTYRT-ASVTIES----------------DYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQ 199 (359)
T ss_pred Cccccceee-EEEEEEC----------------CceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccc
Confidence 001111111 1133333 778888888888631 11 22334444 589999999999988
Q ss_pred ceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc-eEEEEEecC-CCceEEeEEEEeeEE
Q 039868 172 DCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN-GLRIKTWQG-GSGYARKITFNDITL 249 (346)
Q Consensus 172 D~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~-gi~i~s~~~-~~g~v~nI~~~ni~~ 249 (346)
|-+-... ..-+++||++.+.-.+=+|. -...|++|++..... .-.|..... ....-....|.|+++
T Consensus 200 DTLy~~~--gR~yf~~CyIeG~VDFIFG~----------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~i 267 (359)
T PLN02671 200 DTLLDET--GSHYFYQCYIQGSVDFIFGN----------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVI 267 (359)
T ss_pred cccEeCC--CcEEEEecEEEEeccEEecc----------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEE
Confidence 8775554 35789999998776666654 257889999875321 113332211 112234678999998
Q ss_pred ec
Q 039868 250 TD 251 (346)
Q Consensus 250 ~~ 251 (346)
..
T Consensus 268 tg 269 (359)
T PLN02671 268 NG 269 (359)
T ss_pred cc
Confidence 75
No 48
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.85 E-value=0.0095 Score=59.73 Aligned_cols=187 Identities=10% Similarity=0.197 Sum_probs=112.8
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EE-EecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NL-IAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l-~~~~~~~~~~~~~~~ 99 (346)
.||. -|-.-||+||+++... ....-+|+|.+| +|. ..+.++.. | .+++|.++| |+ ....... .
T Consensus 231 ~dGs-G~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~nItl~G~g~~~TiIt~~~~~~-------~ 298 (529)
T PLN02170 231 ADGS-GTHKTIGEALLSTSLESGGGRTVIYLKAG-TYH-ENLNIPTK-Q-KNVMLVGDGKGKTVIVGSRSNR-------G 298 (529)
T ss_pred CCCC-CchhhHHHHHHhcccccCCceEEEEEeCC-eeE-EEEecCCC-C-ceEEEEEcCCCCeEEEeCCcCC-------C
Confidence 4553 3467899999643321 223568999999 997 55555421 2 689998875 22 2211000 0
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+=.+ +.--+.+.| +++..+|++|.|.........+-+. .++...+.+|.|....|-+-.++
T Consensus 299 g~~T~-~SaTv~v~~----------------~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~ 361 (529)
T PLN02170 299 GWTTY-QTATVAAMG----------------DGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS 361 (529)
T ss_pred CCccc-cceEEEEEc----------------CCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC
Confidence 00001 011133333 7889999999997543233333332 35889999999999888777665
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc---eEEEEEecCCC--ceEEeEEEEeeEEecCC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN---GLRIKTWQGGS--GYARKITFNDITLTDVD 253 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~---gi~i~s~~~~~--g~v~nI~~~ni~~~~~~ 253 (346)
..-++++|++.+.-.+=+|. -...|+||++..... .-.|... ++. ..-..+.|.||++....
T Consensus 362 --~Rqyy~~C~I~GtVDFIFG~----------a~avFq~C~I~~~~~~~~~g~ITAq-~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 362 --KRQFYRETDITGTVDFIFGN----------SAVVFQSCNIAARKPSGDRNYVTAQ-GRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred --CCEEEEeeEEccccceeccc----------ceEEEeccEEEEecCCCCceEEEec-CCCCCCCCceEEEEeeEEecCC
Confidence 34578999998776666664 367888998865321 2334332 211 33456889999997643
No 49
>PLN02176 putative pectinesterase
Probab=97.84 E-value=0.0041 Score=59.15 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=107.7
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEEecCCCCCCCCCCCcc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLIAPEGPSSWKGKDRRS 100 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~~~~~~~~~~~~~~~~ 100 (346)
.||.. |=.-||+||+ +++. ....-+|+|.+| +|. ..|.++.. | .+++|.+++ ++..-.+.. .
T Consensus 45 ~dGsG-df~TIq~AId-avP~~~~~~~~I~Ik~G-vY~-EkV~Ip~~-k-~~vtl~G~g~~~TiIt~~~~~-~------- 110 (340)
T PLN02176 45 PNDAR-YFKTVQSAID-SIPLQNQNWIRILIQNG-IYR-EKVTIPKE-K-GYIYMQGKGIEKTIIAYGDHQ-A------- 110 (340)
T ss_pred CCCCC-CccCHHHHHh-hchhcCCceEEEEECCc-EEE-EEEEECCC-C-ccEEEEEcCCCceEEEEeCCc-c-------
Confidence 45533 4678999995 5541 112347899999 997 55655411 1 689999875 222101100 0
Q ss_pred cEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC------CCCCeeeec-CcccEEEEeeEEecCCce
Q 039868 101 WLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS------PNTDGIDIS-ASQNIHILNSNIATGDDC 173 (346)
Q Consensus 101 ~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~------~~~DGI~i~-~s~nv~I~n~~i~~gdD~ 173 (346)
.....-+.+.+ .++..+|++|.|.... .....+-+. ..+...+.+|.|....|-
T Consensus 111 ---t~~saT~~v~a----------------~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDT 171 (340)
T PLN02176 111 ---TDTSATFTSYA----------------SNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDT 171 (340)
T ss_pred ---cccceEEEEEC----------------CCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccce
Confidence 00001122222 7888999999986421 112233332 358999999999998887
Q ss_pred EEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC-------ceEEEEEecCCC-ceEEeEEEE
Q 039868 174 IAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ-------NGLRIKTWQGGS-GYARKITFN 245 (346)
Q Consensus 174 i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~-------~gi~i~s~~~~~-g~v~nI~~~ 245 (346)
+-... ..-++++|++.+.-.+-+|. -...|+||++.... ..-.|....... ..-....|.
T Consensus 172 Ly~~~--gRqyf~~CyIeG~VDFIFG~----------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~ 239 (340)
T PLN02176 172 LFDGK--GRHYYKRCVISGGIDFIFGY----------AQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFK 239 (340)
T ss_pred eEeCC--cCEEEEecEEEecccEEecC----------ceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEE
Confidence 76654 46889999998776666654 25789999987421 011232221111 223467899
Q ss_pred eeEEecC
Q 039868 246 DITLTDV 252 (346)
Q Consensus 246 ni~~~~~ 252 (346)
||++...
T Consensus 240 ~C~itg~ 246 (340)
T PLN02176 240 DCTVTGV 246 (340)
T ss_pred CCEEccC
Confidence 9998763
No 50
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0039 Score=62.58 Aligned_cols=186 Identities=11% Similarity=0.172 Sum_probs=113.0
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +++. ....-+|+|.+| +|. ..+.++.. | .+++|.++| | |.......+
T Consensus 212 ~dGs-G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~~i~l~G~g~~~TiIt~~~~~~~------- 278 (520)
T PLN02201 212 ADGT-GNFTTIMDAVL-AAPDYSTKRYVIYIKKG-VYL-ENVEIKKK-K-WNIMMVGDGIDATVITGNRSFID------- 278 (520)
T ss_pred CCCC-CCccCHHHHHH-hchhcCCCcEEEEEeCc-eeE-EEEEecCC-C-ceEEEEecCCCCcEEEeCCccCC-------
Confidence 4553 34678999995 5541 223468999999 997 45555421 1 689998875 2 222111000
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+-.+ +..-+.+.| +++..+|++|.|.........+-+. .++...+.+|.|....|-+-.+.
T Consensus 279 g~~T~-~SAT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~ 341 (520)
T PLN02201 279 GWTTF-RSATFAVSG----------------RGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT 341 (520)
T ss_pred CCccc-ceEEEEEEC----------------CCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC
Confidence 00011 111233333 7888999999997543333444443 35899999999999888877665
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQG-GSGYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~-~~g~v~nI~~~ni~~~~~ 252 (346)
+ .-++++|++.+.-.+=+|. -...|+||++.... ..-.|..... ....-..+.|.||++...
T Consensus 342 ~--Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 342 M--RQFYRECRITGTVDFIFGD----------ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred C--CEEEEeeEEeecccEEecC----------ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 2 4577999998776766765 36789999886421 1123333211 113345688999998753
No 51
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0021 Score=64.74 Aligned_cols=186 Identities=11% Similarity=0.162 Sum_probs=109.7
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EE-EecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NL-IAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l-~~~~~~~~~~~~~~~ 99 (346)
.||.. |=.-||+||+ +.+. +...-+|+|.+| +|.=. +.++.. | .+++|.++| ++ ....... .
T Consensus 238 ~dGsG-~f~TIq~Av~-a~p~~~~~r~vI~Vk~G-vY~E~-V~I~~~-k-~~i~l~G~g~~~tiIt~~~~~~-------~ 304 (537)
T PLN02506 238 LDGSG-HYRTITEAIN-EAPNHSNRRYIIYVKKG-VYKEN-IDMKKK-K-TNIMLVGDGIGQTVVTGNRNFM-------Q 304 (537)
T ss_pred CCCCC-CccCHHHHHH-hchhcCCCcEEEEEeCC-eeeEE-EeccCC-C-ceEEEEEcCCCCeEEEeCcccc-------C
Confidence 35532 4668999995 5541 223468999999 99743 333211 1 688888875 22 2111000 0
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+-.+. .--+.+.| +++..+|++|.|.........+-+. .+.++.+.+|.|....|-+-.++
T Consensus 305 g~~T~~-saT~~v~~----------------~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~ 367 (537)
T PLN02506 305 GWTTFR-TATVAVSG----------------RGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS 367 (537)
T ss_pred CCCccc-ceEEEEEc----------------CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC
Confidence 000000 01122222 7889999999997543333344443 36899999999999888776655
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc----eEEEEEecCCC-ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN----GLRIKTWQGGS-GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~----gi~i~s~~~~~-g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+-+|. -...|+||++..... .-.|....... ..-..+.|.|+++...
T Consensus 368 --~rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 368 --LRQFYRECEIYGTIDFIFGN----------GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred --CceEEEeeEEecccceEccC----------ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 34689999998776766665 357888999874321 12333321111 2335678999988753
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.81 E-value=0.0016 Score=61.09 Aligned_cols=185 Identities=16% Similarity=0.214 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHhcCCC-CCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCCCCCCCCCCcccEEEEeee
Q 039868 30 DDSQAFIKAWNAVCGDT-SNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVN 108 (346)
Q Consensus 30 ddT~Aiq~Ai~~a~~~~-~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ 108 (346)
-|=.-||+||+ +++.. ...-+|+|.|| +|. ..|.++.. | .+++|.+++. + ...|... .
T Consensus 10 gdf~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~-E~V~i~~~-k-~~v~l~G~~~-------~-------~tiI~~~--~ 68 (298)
T PF01095_consen 10 GDFTTIQAAID-AAPDNNTSRYTIFIKPG-TYR-EKVTIPRS-K-PNVTLIGEGR-------D-------KTIITGN--D 68 (298)
T ss_dssp SSBSSHHHHHH-HS-SSSSS-EEEEE-SE-EEE---EEE-ST-S-TTEEEEES-T-------T-------TEEEEE----
T ss_pred CCccCHHHHHH-hchhcCCceEEEEEeCe-eEc-cccEeccc-c-ceEEEEecCC-------C-------ceEEEEe--c
Confidence 34667999995 45412 12358999999 997 45666521 1 5888888641 0 0011110 0
Q ss_pred ceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEE
Q 039868 109 GFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS--PNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVT 186 (346)
Q Consensus 109 ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~--~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~ 186 (346)
+. ..+.++.. ...++. ..+++.++|++|.|.... ..+-.+.+. ++++.+.+|.|....|-+-.+. ...+++
T Consensus 69 ~~-~~~~~t~~--saT~~v-~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~~ 141 (298)
T PF01095_consen 69 NA-ADGGGTFR--SATFSV-NADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYFK 141 (298)
T ss_dssp -T-TTB-HCGG--C-SEEE--STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEE
T ss_pred cc-cccccccc--cccccc-cccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEEE
Confidence 00 00101110 011111 128999999999985422 223345544 4889999999999888877765 367899
Q ss_pred eeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEeeEEecC
Q 039868 187 GLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQG-GSGYARKITFNDITLTDV 252 (346)
Q Consensus 187 n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~-~~g~v~nI~~~ni~~~~~ 252 (346)
||++.+.-.+=+|+. ...|++|++.... ....|..... ....-....|.||++...
T Consensus 142 ~c~IeG~vDFIfG~~----------~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 142 NCYIEGNVDFIFGNG----------TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp S-EEEESEEEEEESS----------EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred eeEEEecCcEEECCe----------eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 999988777777752 5679999997432 1234433211 113345678999999864
No 53
>PLN02916 pectinesterase family protein
Probab=97.81 E-value=0.0045 Score=61.67 Aligned_cols=186 Identities=11% Similarity=0.139 Sum_probs=112.4
Q ss_pred CCCCcchHHHHHHHHHHhcCC----CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EE-EecCCCCCCCCC
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD----TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NL-IAPEGPSSWKGK 96 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~----~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l-~~~~~~~~~~~~ 96 (346)
.||. -|=.-||+||+ +++. ....-+|+|.|| +|. ..+.++.. | .+++|.++| |+ .......+
T Consensus 193 ~dGs-G~f~TIq~AI~-a~P~~~~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~~i~l~G~g~~~TiIt~~~~~~~---- 262 (502)
T PLN02916 193 RDGS-GTHRTINQALA-ALSRMGKSRTNRVIIYVKAG-VYN-EKVEIDRH-M-KNVMFVGDGMDKTIITNNRNVPD---- 262 (502)
T ss_pred CCCC-CCccCHHHHHH-hcccccCCCCceEEEEEeCc-eee-EEEEecCC-C-ceEEEEecCCCCcEEEeCCccCC----
Confidence 3453 34567999995 4441 122458999999 998 55555421 1 689998876 22 22111000
Q ss_pred CCcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEE
Q 039868 97 DRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIA 175 (346)
Q Consensus 97 ~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~ 175 (346)
+.. .+. .--+.+.| +++..+|++|.|.........+-+. .++...+.+|.|....|-+-
T Consensus 263 -g~~--T~~-SAT~~v~~----------------~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy 322 (502)
T PLN02916 263 -GST--TYS-SATFGVSG----------------DGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLF 322 (502)
T ss_pred -CCc--cee-eEEEEEEC----------------CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeE
Confidence 000 011 11133333 7888999999986543333444443 45899999999999888877
Q ss_pred eCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEeeEEe
Q 039868 176 INTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQG-GSGYARKITFNDITLT 250 (346)
Q Consensus 176 i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~-~~g~v~nI~~~ni~~~ 250 (346)
.+++ .-++++|++.+.-.+=+|. -...|+||.+.-.. ..-.|..... ....-..+.|.||++.
T Consensus 323 ~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it 390 (502)
T PLN02916 323 VHSL--RQFYRDCHIYGTIDFIFGD----------AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVR 390 (502)
T ss_pred eCCC--CEEEEecEEecccceeccC----------ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEe
Confidence 6653 4688999998776666664 36788899886421 1223433211 1133457889999997
Q ss_pred cC
Q 039868 251 DV 252 (346)
Q Consensus 251 ~~ 252 (346)
..
T Consensus 391 ~~ 392 (502)
T PLN02916 391 AS 392 (502)
T ss_pred cC
Confidence 64
No 54
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.81 E-value=0.0047 Score=60.12 Aligned_cols=211 Identities=13% Similarity=0.184 Sum_probs=117.3
Q ss_pred cCCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee-----E-EEecC----CCCC
Q 039868 24 VGNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG-----N-LIAPE----GPSS 92 (346)
Q Consensus 24 ~gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g-----~-l~~~~----~~~~ 92 (346)
.+||.. |=.-||+||+++... ....-+|+|-+| +|. ..|.++.. | .+++|.++| + |.... .++.
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~-EkV~Ip~~-k-p~ItL~G~G~~~~~TvIt~~~~~~~~~~~ 161 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQ-GTVYVPAA-A-PPITLYGTGEKPIDVKIGLALDGEMSPAD 161 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCc-eeE-EEEEeCCC-C-ceEEEEecCCCCCceEEEecCcccccccc
Confidence 466643 466899999644431 112457899999 997 55666421 1 689999854 3 33221 0111
Q ss_pred CCCC---------CCcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCC----CCCCeeeec-Ccc
Q 039868 93 WKGK---------DRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESS----PNTDGIDIS-ASQ 158 (346)
Q Consensus 93 ~~~~---------~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~----~~~DGI~i~-~s~ 158 (346)
|... ..+.|+.++.+.+-.-.+.|+.. ...+|.. .+++.++|++|.|.... .....+-+. ..+
T Consensus 162 ~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~--SATv~v~-ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GD 238 (422)
T PRK10531 162 WRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLC--SAVFWSQ-NNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGD 238 (422)
T ss_pred ccccccccccccccccccccccccccccCCCcCcee--eEEEEEE-CCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCC
Confidence 1100 01234444433111000011111 1122222 28999999999996431 112233332 358
Q ss_pred cEEEEeeEEecCCceEEeCCC----------ceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc---
Q 039868 159 NIHILNSNIATGDDCIAINTG----------SSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN--- 225 (346)
Q Consensus 159 nv~I~n~~i~~gdD~i~i~~g----------s~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~--- 225 (346)
.+.+.+|.|....|-+-..+. ...-++++|++.+.-.+-+|. -...|+||++.....
T Consensus 239 ra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~----------g~AvFenC~I~s~~~~~~ 308 (422)
T PRK10531 239 KVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGR----------GAVVFDNTEFRVVNSRTQ 308 (422)
T ss_pred cEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccC----------ceEEEEcCEEEEecCCCC
Confidence 999999999988887765320 125889999998776666664 267889998865321
Q ss_pred -eEEEEEecCCCceEEeEEEEeeEEecC
Q 039868 226 -GLRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 226 -gi~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
.-.|.........-....|.||++...
T Consensus 309 ~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 309 QEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred CceEEEecCCCCCCCCEEEEECCEEecC
Confidence 123322211113345678999999874
No 55
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.81 E-value=0.00037 Score=68.70 Aligned_cols=123 Identities=14% Similarity=0.265 Sum_probs=69.5
Q ss_pred eeEEEEeeEEcCC-ceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCC------
Q 039868 181 SQINVTGLTCGPG-HGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVD------ 253 (346)
Q Consensus 181 ~nv~I~n~~~~~~-~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~------ 253 (346)
++-+|+||.++.. +.|.+ ..+++.++||+++...+|--|. +......++||+|+|+.+-..+
T Consensus 380 ~nS~i~dcF~h~nDD~iKl----------YhS~v~v~~~ViWk~~Ngpiiq-~GW~pr~isnv~veni~IIh~r~~~~~~ 448 (582)
T PF03718_consen 380 PNSTIRDCFIHVNDDAIKL----------YHSNVSVSNTVIWKNENGPIIQ-WGWTPRNISNVSVENIDIIHNRWIWHNN 448 (582)
T ss_dssp TT-EEEEEEEEESS-SEE------------STTEEEEEEEEEE-SSS-SEE---CS---EEEEEEEEEEEEE---SSGGC
T ss_pred CCCeeeeeEEEecCchhhe----------eecCcceeeeEEEecCCCCeEE-eeccccccCceEEeeeEEEeeeeecccC
Confidence 3456667766643 33544 2368899999999877765553 2233467999999999986552
Q ss_pred ---ccEEEE-eeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCCCCeecEEEEeEEEE
Q 039868 254 ---NPIIID-QFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIA 316 (346)
Q Consensus 254 ---~~i~i~-~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~~~nv~v~ 316 (346)
.+|.-. ..|.+-.......+..+|++++|+|+++.......+.|. |-...+|+.++|+.+.
T Consensus 449 ~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 449 YVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp TTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred CCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeecc
Confidence 223322 234221111233455689999999999886544445554 4455677888888887
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0042 Score=63.43 Aligned_cols=185 Identities=11% Similarity=0.122 Sum_probs=111.6
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +++. ....-+|+|.+| +|. ..|.++.. | .+++|.++| | |.......+
T Consensus 291 ~dGs-G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~~i~l~G~g~~~TiIt~~~~~~~------- 357 (596)
T PLN02745 291 KDGS-GNFTTISDALA-AMPAKYEGRYVIYVKQG-IYD-ETVTVDKK-M-VNVTMYGDGSQKTIVTGNKNFAD------- 357 (596)
T ss_pred CCCC-CCcccHHHHHH-hccccCCceEEEEEeCC-eeE-EEEEEcCC-C-ceEEEEecCCCceEEEECCcccC-------
Confidence 3443 24678999995 5541 223458999999 998 44555321 1 689999875 2 222111100
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+-.+. .--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.+.
T Consensus 358 g~~T~~-saT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~ 420 (596)
T PLN02745 358 GVRTFR-TATFVALG----------------EGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT 420 (596)
T ss_pred CCccee-eEEEEEEc----------------CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC
Confidence 000111 11233333 7888999999986532233334443 36899999999999888766554
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+=+|. -...|+||++.-.. ..-.|... ++. ..-..+.|.||++...
T Consensus 421 --~Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 421 --HRQFYRSCVITGTIDFIFGD----------AAAIFQNCLIFVRKPLPNQQNTVTAQ-GRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred --CcEEEEeeEEEeeccEEecc----------eeEEEEecEEEEecCCCCCCceEEec-CCCCCCCCceEEEEeeEEecC
Confidence 35789999998776666654 36788899886421 11233332 221 3345788999999864
No 57
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.74 E-value=0.0038 Score=63.06 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=111.6
Q ss_pred CCCCcchHHHHHHHHHHhcCC---CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEE-ecCCCCCCCCCC
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD---TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLI-APEGPSSWKGKD 97 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~---~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~-~~~~~~~~~~~~ 97 (346)
.||. -|=.-||+||+ +++. ....-+|+|.+| +|.= .|.++.. | .+++|.++| |+. ..... .
T Consensus 229 ~dGs-G~f~TIq~Ai~-a~p~~~~~~~r~vI~Ik~G-~Y~E-~V~i~~~-k-~~i~l~G~g~~~TvIt~~~~~---~--- 296 (539)
T PLN02995 229 KDGS-GHFNTVQAAID-VAGRRKVTSGRFVIYVKRG-IYQE-NINVRLN-N-DDIMLVGDGMRSTIITGGRSV---K--- 296 (539)
T ss_pred CCCC-CCccCHHHHHH-hcccccCCCceEEEEEeCC-EeEE-EEEecCC-C-CcEEEEEcCCCCeEEEeCCcc---C---
Confidence 4553 34678999995 4431 123468999999 9974 4444311 2 699999976 322 21100 0
Q ss_pred CcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEe
Q 039868 98 RRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAI 176 (346)
Q Consensus 98 ~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i 176 (346)
..+-.+ +..-+.|.| .++..+|++|.|.........+-+. .++...+.+|.|....|-+-.
T Consensus 297 -~~~~T~-~SaT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~ 358 (539)
T PLN02995 297 -GGYTTY-NSATAGIEG----------------LHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV 358 (539)
T ss_pred -CCCccc-ceEEEEEEC----------------CCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhcc
Confidence 000011 111233444 7888999999986543333444443 358999999999998887666
Q ss_pred CCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc----eEEEEEecCCC--ceEEeEEEEeeEEe
Q 039868 177 NTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN----GLRIKTWQGGS--GYARKITFNDITLT 250 (346)
Q Consensus 177 ~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~----gi~i~s~~~~~--g~v~nI~~~ni~~~ 250 (346)
++ ..-++++|++.+.-.+=+|. -...|+||++..... .-.|... ++. ..-..+.|.||++.
T Consensus 359 ~~--~Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~ 425 (539)
T PLN02995 359 HS--QRQFYRECYIYGTVDFIFGN----------AAAVFQNCIILPRRPLKGQANVITAQ-GRADPFQNTGISIHNSRIL 425 (539)
T ss_pred CC--CceEEEeeEEeeccceEecc----------cceEEeccEEEEecCCCCCcceEecC-CCCCCCCCceEEEEeeEEe
Confidence 54 34589999998776666664 356888888864321 1233332 221 33467889999988
Q ss_pred cC
Q 039868 251 DV 252 (346)
Q Consensus 251 ~~ 252 (346)
..
T Consensus 426 ~~ 427 (539)
T PLN02995 426 PA 427 (539)
T ss_pred cC
Confidence 64
No 58
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.74 E-value=0.0039 Score=63.31 Aligned_cols=184 Identities=13% Similarity=0.167 Sum_probs=109.9
Q ss_pred CCCCcchHHHHHHHHHHhcCCCC-----CCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCC
Q 039868 25 GNGVTDDSQAFIKAWNAVCGDTS-----NNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKG 95 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~~~-----~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~ 95 (346)
.||. -|=.-||+||+ +++ .. ..-+|+|.+| +|. ..|.++.. | .+++|.++| | |.......+
T Consensus 256 ~dGs-G~f~TIq~Av~-a~p-~~~~~~~~~~vI~Ik~G-~Y~-E~V~i~~~-k-~~i~l~G~g~~~TiIt~~~~~~~--- 325 (566)
T PLN02713 256 QNGT-GNFTTINDAVA-AAP-NNTDGSNGYFVIYVTAG-VYE-EYVSIPKN-K-KYLMMIGDGINQTVITGNRSVVD--- 325 (566)
T ss_pred CCCC-CCCCCHHHHHH-hhh-cccCCCCceEEEEEcCc-EEE-EEEEecCC-C-ceEEEEecCCCCcEEEcCCcccC---
Confidence 4553 34667999995 554 21 2247999999 997 45555311 1 689998876 2 221111000
Q ss_pred CCCcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceE
Q 039868 96 KDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCI 174 (346)
Q Consensus 96 ~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i 174 (346)
.+-.+. ..-+.+.| +++..+|++|.|.........+-+. .++...+.+|.|....|-+
T Consensus 326 ----g~~T~~-SaT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTL 384 (566)
T PLN02713 326 ----GWTTFN-SATFAVVG----------------QNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTL 384 (566)
T ss_pred ----CCcccc-ceeEEEEC----------------CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcce
Confidence 000000 11122222 7889999999996543333444443 4588999999999988877
Q ss_pred EeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCCC--ceEEeEEEEeeE
Q 039868 175 AINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGGS--GYARKITFNDIT 248 (346)
Q Consensus 175 ~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~~--g~v~nI~~~ni~ 248 (346)
-.++ ..-++++|++.+.-.+=+|. -.+.|+||.+.... ..-.|... ++. ..-..+.|.||+
T Consensus 385 y~~~--~Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~c~ 451 (566)
T PLN02713 385 YTHS--LRQFYRECDIYGTVDFIFGN----------AAVVFQNCNLYPRLPMQGQFNTITAQ-GRTDPNQNTGTSIQNCT 451 (566)
T ss_pred EECC--CCEEEEeeEEecccceeccc----------ceEEEeccEEEEecCCCCCcceeeec-CCCCCCCCCEEEEEcCE
Confidence 7665 34689999998776666654 36788888886421 11123222 211 234567889998
Q ss_pred EecC
Q 039868 249 LTDV 252 (346)
Q Consensus 249 ~~~~ 252 (346)
+...
T Consensus 452 i~~~ 455 (566)
T PLN02713 452 IKAA 455 (566)
T ss_pred EecC
Confidence 8754
No 59
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0035 Score=63.32 Aligned_cols=186 Identities=12% Similarity=0.204 Sum_probs=110.8
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---EEEecCCCCCCCCCCCcc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---NLIAPEGPSSWKGKDRRS 100 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~l~~~~~~~~~~~~~~~~ 100 (346)
.||. -|=.-||+||+ +++. ....-+|+|.+| +|. ..|.++-. | .+++|.++| ++..-... . . ..
T Consensus 236 ~dGs-G~f~TIq~Ai~-a~p~~~~~r~vI~Ik~G-vY~-E~V~i~~~-k-~~i~l~G~g~~~TiIt~~~~-~-~----~g 303 (541)
T PLN02416 236 ADGT-GNFSTITDAIN-FAPNNSNDRIIIYVREG-VYE-ENVEIPIY-K-TNIVLIGDGSDVTFITGNRS-V-V----DG 303 (541)
T ss_pred CCCC-CCccCHHHHHH-hhhhcCCceEEEEEeCc-eeE-EEEecCCC-C-ccEEEEecCCCceEEeCCCc-c-C----CC
Confidence 3443 24667999995 5541 222357899999 996 45555311 1 689999876 33211100 0 0 00
Q ss_pred cEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCCC
Q 039868 101 WLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINTG 179 (346)
Q Consensus 101 ~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~g 179 (346)
+-.+. .--+.+.| +++..+|++|.|.........+-+. .++.+.+.+|.|....|-+-.++
T Consensus 304 ~~T~~-saT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~- 365 (541)
T PLN02416 304 WTTFR-SATLAVSG----------------EGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS- 365 (541)
T ss_pred CCccc-eEEEEEEC----------------CCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC-
Confidence 00111 11133333 7889999999987543333444443 35899999999999888766654
Q ss_pred ceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc--e--EEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 180 SSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN--G--LRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 180 s~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~--g--i~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+=+|. -...|+||++..... + -.|... ++. ..-..+.|.||++...
T Consensus 366 -~Rqyy~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 366 -FRQFYRECDIYGTIDYIFGN----------AAVVFQACNIVSKMPMPGQFTVITAQ-SRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred -CceEEEeeEEeeccceeecc----------ceEEEeccEEEEecCCCCCceEEECC-CCCCCCCCCEEEEEeeEEecC
Confidence 35689999998776666665 367888898864321 1 233222 211 2345788999998754
No 60
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.72 E-value=0.006 Score=61.67 Aligned_cols=184 Identities=11% Similarity=0.165 Sum_probs=111.2
Q ss_pred CCCCcchHHHHHHHHHHhcCCCC-----CCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee----EEEecCCCCCCCC
Q 039868 25 GNGVTDDSQAFIKAWNAVCGDTS-----NNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG----NLIAPEGPSSWKG 95 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~~~-----~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g----~l~~~~~~~~~~~ 95 (346)
.||. -|=.-||+||+ +++ .. +.-+|||.+| +|. ..|.++.. | .+++|.++| +|.......+
T Consensus 229 ~dGs-G~f~TI~~Av~-a~p-~~~~~~~~r~vI~vk~G-~Y~-E~V~i~~~-k-~~i~l~G~g~~~tiIt~~~~~~d--- 298 (538)
T PLN03043 229 PYGT-DNFTTITDAIA-AAP-NNSKPEDGYFVIYAREG-YYE-EYVVVPKN-K-KNIMLIGDGINKTIITGNHSVVD--- 298 (538)
T ss_pred CCCC-CCCcCHHHHHH-hcc-ccCCCCcceEEEEEcCe-eeE-EEEEeCCC-C-CcEEEEecCCCCeEEEeCCccCC---
Confidence 4553 34678999994 554 21 1248999999 997 45555311 1 689998876 2222110000
Q ss_pred CCCcccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceE
Q 039868 96 KDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCI 174 (346)
Q Consensus 96 ~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i 174 (346)
.+-.+. .--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+
T Consensus 299 ----g~~T~~-saT~~v~~----------------~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTL 357 (538)
T PLN03043 299 ----GWTTFN-SSTFAVSG----------------ERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTL 357 (538)
T ss_pred ----CCcccc-ceEEEEEC----------------CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCccc
Confidence 000000 01122222 7889999999996543334445443 4588999999999988877
Q ss_pred EeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCCC--ceEEeEEEEeeE
Q 039868 175 AINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGGS--GYARKITFNDIT 248 (346)
Q Consensus 175 ~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~~--g~v~nI~~~ni~ 248 (346)
-.++ ..-+++||++.+.-.+=+|. -.+.|+||++.--. ..-.|... ++. ..-..+.|.||+
T Consensus 358 y~~~--~rq~y~~c~I~GtVDFIFG~----------a~avfq~c~i~~r~~~~~~~~~iTA~-~r~~~~~~tG~~~~~c~ 424 (538)
T PLN03043 358 YVHS--LRQFYRECDIYGTVDFIFGN----------AAAIFQNCNLYARKPMANQKNAFTAQ-GRTDPNQNTGISIINCT 424 (538)
T ss_pred ccCC--CcEEEEeeEEeeccceEeec----------ceeeeeccEEEEecCCCCCCceEEec-CCCCCCCCceEEEEecE
Confidence 6655 35689999998776766764 36788899886421 11223222 211 233568899999
Q ss_pred EecC
Q 039868 249 LTDV 252 (346)
Q Consensus 249 ~~~~ 252 (346)
+...
T Consensus 425 i~~~ 428 (538)
T PLN03043 425 IEAA 428 (538)
T ss_pred EecC
Confidence 8764
No 61
>PLN02197 pectinesterase
Probab=97.71 E-value=0.0047 Score=62.85 Aligned_cols=182 Identities=10% Similarity=0.153 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCcccEEEE
Q 039868 31 DSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRRSWLYFV 105 (346)
Q Consensus 31 dT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~~~i~~~ 105 (346)
|=.-||+||+ +.+. ....-+|+|-+| +|. ..+.++.. | .+++|.++| | |.......... ..-.+.
T Consensus 286 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k-~ni~l~G~g~~~TiIt~~~~~~~~~-----g~~T~~ 355 (588)
T PLN02197 286 QFKTISQAVM-ACPDKNPGRCIIHIKAG-IYN-EQVTIPKK-K-NNIFMFGDGARKTVISYNRSVKLSP-----GTTTSL 355 (588)
T ss_pred CcCCHHHHHH-hccccCCceEEEEEeCc-eEE-EEEEccCC-C-ceEEEEEcCCCCeEEEeccccccCC-----CCcccc
Confidence 4667999995 5541 223357999999 997 45555421 1 689998875 2 22211110000 000010
Q ss_pred eeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCCCceeEE
Q 039868 106 NVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINTGSSQIN 184 (346)
Q Consensus 106 ~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~gs~nv~ 184 (346)
.--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.+++ .-+
T Consensus 356 -SaT~~v~~----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqy 416 (588)
T PLN02197 356 -SGTVQVES----------------EGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQF 416 (588)
T ss_pred -eeEEEEEC----------------CcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEE
Confidence 11133333 7888999999996543233444443 369999999999998888776653 458
Q ss_pred EEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC--ce--EEEEEecCCC---ceEEeEEEEeeEEecC
Q 039868 185 VTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ--NG--LRIKTWQGGS---GYARKITFNDITLTDV 252 (346)
Q Consensus 185 I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~--~g--i~i~s~~~~~---g~v~nI~~~ni~~~~~ 252 (346)
+++|++.+.-.+=+|. -...|+||++.-.. .+ -.|.. +++. ..-..+.|.||++...
T Consensus 417 y~~C~I~GtVDFIFG~----------a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 417 YRNIVVSGTVDFIFGK----------SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred EEeeEEEecccccccc----------eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecC
Confidence 9999998776666654 24788899886321 11 23322 2221 2345688999999764
No 62
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0048 Score=63.03 Aligned_cols=186 Identities=10% Similarity=0.180 Sum_probs=112.6
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +.+. +...-+|+|.+| +|. ..+.++.. | .+++|.++| | |.......+ +.
T Consensus 281 ~dGs-G~f~TI~~Av~-a~p~~~~~r~vI~ik~G-vY~-E~V~i~~~-k-~ni~l~Gdg~~~TiIt~~~~~~~-----g~ 349 (587)
T PLN02313 281 ADGS-GDFTTVAAAVA-AAPEKSNKRFVIHIKAG-VYR-ENVEVTKK-K-KNIMFLGDGRGKTIITGSRNVVD-----GS 349 (587)
T ss_pred CCCC-CCCccHHHHHH-hccccCCceEEEEEeCc-eeE-EEEEeCCC-C-CeEEEEecCCCccEEEeCCcccC-----CC
Confidence 3453 24678999995 5541 223459999999 997 34444311 1 688888876 2 222111100 00
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
. .+.. --+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.++
T Consensus 350 ~--t~~s-at~~v~~----------------~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~ 410 (587)
T PLN02313 350 T--TFHS-ATVAAVG----------------ERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS 410 (587)
T ss_pred C--ceee-EEEEEEC----------------CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC
Confidence 0 1111 1133333 7889999999997543333444443 46899999999999888776665
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc----eEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN----GLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~----gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+-+|. -.+.|+||++.-... .-.|... ++. ..-..+.|.||++...
T Consensus 411 --~rq~y~~c~I~GtvDFIFG~----------a~avfq~c~i~~r~~~~~~~~~iTAq-gr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 411 --NRQFFVKCHITGTVDFIFGN----------AAAVLQDCDINARRPNSGQKNMVTAQ-GRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred --CcEEEEeeEEeeccceeccc----------eeEEEEccEEEEecCCCCCcceEEec-CCCCCCCCceEEEEecEEecC
Confidence 34589999998776666654 367899999874311 1233332 221 3345788999999764
Q ss_pred C
Q 039868 253 D 253 (346)
Q Consensus 253 ~ 253 (346)
.
T Consensus 478 ~ 478 (587)
T PLN02313 478 S 478 (587)
T ss_pred C
Confidence 3
No 63
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0047 Score=63.06 Aligned_cols=187 Identities=12% Similarity=0.162 Sum_probs=113.0
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||.. |=.-||+||+ +++. ....-+|+|.+| +|.=..|.++-. | .+++|.++| + |.......+
T Consensus 278 ~dGsG-~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~-k-~ni~l~G~g~~~TiIt~~~~~~~------- 345 (587)
T PLN02484 278 KDGNG-TFKTISEAIK-KAPEHSSRRTIIYVKAG-RYEENNLKVGRK-K-TNLMFIGDGKGKTVITGGKSIFD------- 345 (587)
T ss_pred CCCCC-CcccHHHHHH-hccccCCCcEEEEEeCC-EEEEEEEEECCC-C-ceEEEEecCCCCeEEecCCcccC-------
Confidence 35533 3667999995 5541 223468999999 997533555311 2 689998875 3 322211100
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
.+=.+. .--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.++
T Consensus 346 ~~~t~~-saT~~v~~----------------~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~ 408 (587)
T PLN02484 346 NLTTFH-TASFAATG----------------AGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS 408 (587)
T ss_pred CCcccc-eEEEEEEc----------------CCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC
Confidence 000111 11244444 7888999999986543233344443 35899999999999888776654
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEeeEEecC
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQG-GSGYARKITFNDITLTDV 252 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~-~~g~v~nI~~~ni~~~~~ 252 (346)
..-++++|++.+.-.+=+|. -...|+||++.-.. ..-.|..... ....-..+.|.||++...
T Consensus 409 --~Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 409 --NRQFFRECDIYGTVDFIFGN----------AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred --CcEEEEecEEEeccceeccc----------ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 35688999998776666654 36788899886421 1123333211 113345788999999754
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.015 Score=59.15 Aligned_cols=181 Identities=10% Similarity=0.146 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCcccEEEE
Q 039868 31 DSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRRSWLYFV 105 (346)
Q Consensus 31 dT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~~~i~~~ 105 (346)
|=.-||+||+ +++. ....-+|+|.+| +|. ..+.++-. | .+++|.++| + |....+..+ +.+ .+.
T Consensus 269 ~f~tI~~Av~-a~p~~~~~~~vI~ik~G-vY~-E~V~i~~~-k-~~i~~~G~g~~~tiIt~~~~~~d-----g~~--t~~ 336 (565)
T PLN02468 269 KYKTISEALK-DVPEKSEKRTIIYVKKG-VYF-ENVRVEKK-K-WNVVMVGDGMSKTIVSGSLNFVD-----GTP--TFS 336 (565)
T ss_pred CccCHHHHHH-hchhcCCCcEEEEEeCC-ceE-EEEEecCC-C-CeEEEEecCCCCCEEEeCCccCC-----CCC--ccc
Confidence 3568999995 4441 223569999999 997 45555311 1 688888876 2 222111100 000 000
Q ss_pred eeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCCCceeEE
Q 039868 106 NVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINTGSSQIN 184 (346)
Q Consensus 106 ~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~gs~nv~ 184 (346)
.--+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.++ ..-+
T Consensus 337 -saT~~v~~----------------~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~ 397 (565)
T PLN02468 337 -TATFAVFG----------------KGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQF 397 (565)
T ss_pred -eeeeeEEC----------------CCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceE
Confidence 01133333 7889999999986543333444443 46899999999999888776655 3457
Q ss_pred EEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCC--CceEEeEEEEeeEEecCC
Q 039868 185 VTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGG--SGYARKITFNDITLTDVD 253 (346)
Q Consensus 185 I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~ 253 (346)
+++|++.+.-.+=+|. -.+.|+||.+.-.. ..-.|... ++ ...-..+.|.||++....
T Consensus 398 y~~C~I~GtvDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 398 YRECNIYGTVDFIFGN----------SAVVFQNCNILPRRPMKGQQNTITAQ-GRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred EEeeEEecccceeecc----------ceEEEeccEEEEecCCCCCCceEEec-CCCCCCCCceEEEEccEEecCC
Confidence 9999998776766765 36789999986421 11233332 22 133456889999998643
No 65
>PLN02497 probable pectinesterase
Probab=97.66 E-value=0.0069 Score=57.38 Aligned_cols=186 Identities=10% Similarity=0.097 Sum_probs=107.2
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCCCCCCCCCCcccEE
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLY 103 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~~~~~~~~~~~~i~ 103 (346)
.||.. |=.-||+||+ +++. +...-+|+|-+| +|. ..|.++.. | .+++|.+++.= ...|.
T Consensus 38 ~dGsG-df~TIq~AId-avP~~~~~~~~I~Ik~G-~Y~-EkV~Ip~~-k-~~itl~G~g~~--------------~tiIt 97 (331)
T PLN02497 38 QSGHG-NFTTIQSAID-SVPSNNKHWFCINVKAG-LYR-EKVKIPYD-K-PFIVLVGAGKR--------------RTRIE 97 (331)
T ss_pred CCCCC-CccCHHHHHh-hccccCCceEEEEEeCc-EEE-EEEEecCC-C-CcEEEEecCCC--------------CceEE
Confidence 35533 4678999995 5541 112346999999 996 45555311 1 68998887510 00111
Q ss_pred EEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCC-------CCCeeeec-CcccEEEEeeEEecCCceEE
Q 039868 104 FVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSP-------NTDGIDIS-ASQNIHILNSNIATGDDCIA 175 (346)
Q Consensus 104 ~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~-------~~DGI~i~-~s~nv~I~n~~i~~gdD~i~ 175 (346)
+.+.. .-.+..++. . ...++.++|++|.|....+ ....+-+. ..+...+.+|.|....|-+-
T Consensus 98 ~~~~~--~t~~SaT~~-------v-~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy 167 (331)
T PLN02497 98 WDDHD--STAQSPTFS-------T-LADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW 167 (331)
T ss_pred Eeccc--cccCceEEE-------E-ecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccccee
Confidence 11100 000111111 1 1178899999999864311 11233332 35899999999999888775
Q ss_pred eCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCc------eEEEEEecC-CCceEEeEEEEeeE
Q 039868 176 INTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN------GLRIKTWQG-GSGYARKITFNDIT 248 (346)
Q Consensus 176 i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~------gi~i~s~~~-~~g~v~nI~~~ni~ 248 (346)
... ..-+++||++.+.-.+=+|. -...|+||++..... .-.|..... ....-....|.|++
T Consensus 168 ~~~--gRqyf~~C~IeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~ 235 (331)
T PLN02497 168 DSD--GRHYFKRCTIQGAVDFIFGS----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCL 235 (331)
T ss_pred eCC--CcEEEEeCEEEecccEEccC----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccE
Confidence 544 35789999998776666654 257889999874221 123332211 11233467899999
Q ss_pred EecC
Q 039868 249 LTDV 252 (346)
Q Consensus 249 ~~~~ 252 (346)
+...
T Consensus 236 itg~ 239 (331)
T PLN02497 236 VYGT 239 (331)
T ss_pred EccC
Confidence 8763
No 66
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0045 Score=63.76 Aligned_cols=155 Identities=13% Similarity=0.174 Sum_probs=86.8
Q ss_pred CCCCcchHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee---E-EEecCCCCCCCCCCCc
Q 039868 25 GNGVTDDSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG---N-LIAPEGPSSWKGKDRR 99 (346)
Q Consensus 25 gdg~tddT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g---~-l~~~~~~~~~~~~~~~ 99 (346)
.||. -|=.-||+||+ +++. ....-+|+|-+| +|.= .|.++-. | .+++|.++| + |..... +.. +
T Consensus 256 ~dGs-G~f~TIq~Av~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k-~~i~l~Gdg~~~TiIt~~~~---~~d--g- 323 (670)
T PLN02217 256 QDGS-GQYKTINEALN-FVPKKKNTTFVVHIKAG-IYKE-YVQVNRS-M-THLVFIGDGPDKTVISGSKS---YKD--G- 323 (670)
T ss_pred CCCC-CCccCHHHHHH-hccccCCceEEEEEeCC-ceEE-EEEEcCC-C-CcEEEEecCCCCeEEEcCCc---cCC--C-
Confidence 3453 24678999995 5541 223458999999 9963 4554311 1 688888875 2 322211 100 0
Q ss_pred ccEEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCC
Q 039868 100 SWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINT 178 (346)
Q Consensus 100 ~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~ 178 (346)
+-.+. .--+.|.| +++..+|++|.|.........+-+. .++...+.+|.|....|-+-.++
T Consensus 324 -~~T~~-SAT~~v~g----------------~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~ 385 (670)
T PLN02217 324 -ITTYK-TATVAIVG----------------DHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS 385 (670)
T ss_pred -CCccc-eEEEEEEC----------------CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC
Confidence 00111 11233333 6788888888886543333344443 35888888888887777665544
Q ss_pred CceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEe
Q 039868 179 GSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLN 221 (346)
Q Consensus 179 gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~ 221 (346)
..-++++|++.+.-.+-+|. -...|+||++.
T Consensus 386 --~Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~I~ 416 (670)
T PLN02217 386 --HRQFYRDCTISGTIDFLFGD----------AAAVFQNCTLL 416 (670)
T ss_pred --CcEEEEeCEEEEeccEEecC----------ceEEEEccEEE
Confidence 24567777776554444443 23456666654
No 67
>PLN02314 pectinesterase
Probab=97.63 E-value=0.007 Score=61.87 Aligned_cols=181 Identities=12% Similarity=0.157 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhcCC-CCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEee----EEEecCCCCCCCCCCCcccEEEE
Q 039868 31 DSQAFIKAWNAVCGD-TSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG----NLIAPEGPSSWKGKDRRSWLYFV 105 (346)
Q Consensus 31 dT~Aiq~Ai~~a~~~-~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g----~l~~~~~~~~~~~~~~~~~i~~~ 105 (346)
|-.-||+||+ +++. ....-+|+|.+| +|. ..+.++-. | .+++|.++| +|.......+ +.. .+
T Consensus 289 ~f~TI~~Av~-a~p~~~~~r~vI~ik~G-~Y~-E~V~i~~~-k-~~i~l~G~g~~~tiIt~~~~~~~-----g~~--t~- 355 (586)
T PLN02314 289 DVKTINEAVA-SIPKKSKSRFVIYVKEG-TYV-ENVLLDKS-K-WNVMIYGDGKDKTIISGSLNFVD-----GTP--TF- 355 (586)
T ss_pred CccCHHHHHh-hccccCCceEEEEEcCc-eEE-EEEEecCC-C-ceEEEEecCCCCcEEEecCCcCC-----CCC--cc-
Confidence 4567999995 5541 223458999999 997 45555311 1 689998876 2222211100 000 01
Q ss_pred eeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCCCceeEE
Q 039868 106 NVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINTGSSQIN 184 (346)
Q Consensus 106 ~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~gs~nv~ 184 (346)
...-+.+.| +++..+|++|.|.........+-+. .+....+.+|.|....|-+-.+++ .-+
T Consensus 356 ~saT~~v~~----------------~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~ 417 (586)
T PLN02314 356 STATFAAAG----------------KGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQF 417 (586)
T ss_pred ceEEEEEEc----------------CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEE
Confidence 111233333 7888999999986543333344443 458899999999998887766653 458
Q ss_pred EEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCC----ceEEEEEecCC--CceEEeEEEEeeEEecCC
Q 039868 185 VTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQ----NGLRIKTWQGG--SGYARKITFNDITLTDVD 253 (346)
Q Consensus 185 I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~ 253 (346)
+++|++.+.-.+=+|. -...|+||.+.-.. ..-.|... ++ ...-..+.|.||++....
T Consensus 418 y~~C~I~GtvDFIFG~----------a~avf~~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 418 YRDCDITGTIDFIFGN----------AAVVFQNCNIQPRQPLPNQFNTITAQ-GKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred EEeeEEEeccceeccC----------ceeeeeccEEEEecCCCCCCceEecC-CCCCCCCCCEEEEEeeEEecCC
Confidence 8999998776666664 36788889886421 11233322 22 134456789999987654
No 68
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.59 E-value=7.3e-05 Score=51.74 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=24.9
Q ss_pred ccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeec
Q 039868 23 AVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQ 68 (346)
Q Consensus 23 A~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~ 68 (346)
|+|||++|||+||.+|+ ++.. .+.++=-.|.||.+++|.-.
T Consensus 1 A~GDGvtdDt~A~~a~l-~a~~----~g~~IDg~GlTykVs~lPd~ 41 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAAL-EASP----VGRKIDGAGLTYKVSSLPDI 41 (67)
T ss_dssp ---CCCCE-HHHHHHHH-HHS-----TTS-EE-TT-EEEESS---G
T ss_pred CCCccccCcHHHHHHHH-hccC----CCeEEecCCceEEEeeCccH
Confidence 78999999999999999 4433 56666678889999876543
No 69
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.54 E-value=0.0055 Score=54.36 Aligned_cols=45 Identities=38% Similarity=0.562 Sum_probs=31.1
Q ss_pred eEEEeEEEEcCCCCCC--CCeeeecCcccEEEEeeEEec-CCceEEeC
Q 039868 133 ATLSNLHISAPESSPN--TDGIDISASQNIHILNSNIAT-GDDCIAIN 177 (346)
Q Consensus 133 v~i~~~~I~~~~~~~~--~DGI~i~~s~nv~I~n~~i~~-gdD~i~i~ 177 (346)
+.|+|++|..+..... ..|+++..+++++|+||++.+ +.+++.+.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 3488888887654332 467888888888999988876 45566554
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0037 Score=57.57 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCeeeecCcccEEEEeeEEecC------CceEEeCCCceeEEEEeeEEcCC---------ce-eEEecccCCCCCCCEe
Q 039868 148 NTDGIDISASQNIHILNSNIATG------DDCIAINTGSSQINVTGLTCGPG---------HG-ISIGSLGKQGEAAAVE 211 (346)
Q Consensus 148 ~~DGI~i~~s~nv~I~n~~i~~g------dD~i~i~~gs~nv~I~n~~~~~~---------~g-i~igs~~~~~~~~~~~ 211 (346)
..-|+.+...+||.|+|++|..- +|+|.|..+++||.|.+|+|..+ +| +.| .....
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Di--------k~~An 186 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDI--------KKDAN 186 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEe--------ccCCc
Confidence 35578888789999999999852 48999976689999999999752 23 444 34568
Q ss_pred EEEEEeeEEeCCCceEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 212 EVHVKNCTLNATQNGLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 212 ni~v~n~~~~~~~~gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
.|+|++|.|.+....+-+.+..... ..-.+|||.++.+++.
T Consensus 187 yITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 187 YITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 9999999999998888776643211 4456788888888775
No 71
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.44 E-value=0.014 Score=56.07 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=35.5
Q ss_pred EeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEe-eeeeecCCCCCCceEEEEee-EEEe
Q 039868 18 VMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLL-QPTSFQGPCKSSNLQVQIEG-NLIA 86 (346)
Q Consensus 18 V~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i-~~l~l~~~~~~s~v~l~~~g-~l~~ 86 (346)
|+.|=+.++. -+.+||+ . -.+|.+-||.+|.+ .++.++ +..+|.+.| +++.
T Consensus 46 vkt~~~~P~e------Dle~~I~-~------haKVaL~Pg~~Y~i~~~V~I~-----~~cYIiGnGA~V~v 98 (386)
T PF01696_consen 46 VKTYWMEPGE------DLEEAIR-Q------HAKVALRPGAVYVIRKPVNIR-----SCCYIIGNGATVRV 98 (386)
T ss_pred EEEEEcCCCc------CHHHHHH-h------cCEEEeCCCCEEEEeeeEEec-----ceEEEECCCEEEEE
Confidence 5556555544 3566773 2 34788888889999 589998 788998864 5554
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0046 Score=57.36 Aligned_cols=172 Identities=13% Similarity=0.159 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHhcCCCCC--CCEEEecCCCEEEeeeeeecCCCCCCceEEEEee------EEEecCCCCCCCCCCCccc
Q 039868 30 DDSQAFIKAWNAVCGDTSN--NPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEG------NLIAPEGPSSWKGKDRRSW 101 (346)
Q Consensus 30 ddT~Aiq~Ai~~a~~~~~~--gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g------~l~~~~~~~~~~~~~~~~~ 101 (346)
++-.-||+|+++|.. ..+ ...+.+-+| .|. +.|.++-. +..++|++++ +|-+..... +. .+.+
T Consensus 92 ~~f~TIQaAvdaA~~-~~~~kr~yI~vk~G-vY~-e~v~Vp~~--~~~ITLyGed~~~~~tvIg~n~aag--p~--np~~ 162 (405)
T COG4677 92 VTFTTIQAAVDAAII-KRTNKRQYIAVKAG-VYQ-ETVYVPAA--PGGITLYGEDEKPIDTVIGLNLAAG--PG--NPAG 162 (405)
T ss_pred cchHHHHHHHhhhcc-cCCCceEEEEEccc-eec-eeEEecCC--CCceeEEecCCCCcceEEEEecCCC--CC--Cccc
Confidence 566789999976655 323 456667799 886 44554421 1348888853 232222111 10 1223
Q ss_pred EEEEeeeceEEEeceEEeCCCcccccccCCceEEEeEEEEcCCC----CCCCCeeeec-CcccEEEEeeEEecCCceEEe
Q 039868 102 LYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPES----SPNTDGIDIS-ASQNIHILNSNIATGDDCIAI 176 (346)
Q Consensus 102 i~~~~~~ni~I~G~G~idg~g~~~~~~~~~nv~i~~~~I~~~~~----~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i 176 (346)
..+..|..-+..-.|++ ....+|... .++..+|++|++... ..+.-.+-+. ....+.++||.+....|-+-+
T Consensus 163 ~m~n~c~ss~~~tigt~--~Sat~~v~~-ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv 239 (405)
T COG4677 163 YMYNSCQSSRSATIGTL--CSATFWVQN-NDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFV 239 (405)
T ss_pred eeecccccchhhhhhhh--hhhhheeec-CCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEe
Confidence 33433321111111222 124456544 788888888887432 1122223332 357888999999877776666
Q ss_pred CCC----------ceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCC
Q 039868 177 NTG----------SSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNAT 223 (346)
Q Consensus 177 ~~g----------s~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~ 223 (346)
+.. .-.-+++||++.+.-.+-+||- -+.|.+|.|.-.
T Consensus 240 ~~~~~~~~~~tn~~~R~yftNsyI~GdvDfIfGsg----------taVFd~c~i~~~ 286 (405)
T COG4677 240 GNSGVQNRLETNRQPRTYFTNSYIEGDVDFIFGSG----------TAVFDNCEIQVV 286 (405)
T ss_pred cCCCCccccccCcchhhheecceecccceEEeccc----------eEEeccceEEEe
Confidence 553 1134678888876666666663 457777777643
No 73
>smart00656 Amb_all Amb_all domain.
Probab=97.40 E-value=0.0053 Score=53.83 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=67.0
Q ss_pred eeeecCcccEEEEeeEEecC-------CceEEeCCCceeEEEEeeEEcCC----------ce-eEEecccCCCCCCCEeE
Q 039868 151 GIDISASQNIHILNSNIATG-------DDCIAINTGSSQINVTGLTCGPG----------HG-ISIGSLGKQGEAAAVEE 212 (346)
Q Consensus 151 GI~i~~s~nv~I~n~~i~~g-------dD~i~i~~gs~nv~I~n~~~~~~----------~g-i~igs~~~~~~~~~~~n 212 (346)
||.+..++||.|+|.+|+.. .|+|.+.. +++|.|..|++..+ ++ +.+ .....+
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~-~~~VwIDHct~s~~~~~~~~~~~~D~~~di--------~~~s~~ 103 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG-SSNVWIDHVSLSGCTVTGFGDDTYDGLIDI--------KNGSTY 103 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeC-CCeEEEEccEeEcceeccCCCCCCCccEEE--------Cccccc
Confidence 35566678999999999853 47898854 89999999999865 22 223 235689
Q ss_pred EEEEeeEEeCCCceEEEEEecCCC-ceEEeEEEEeeEEecC
Q 039868 213 VHVKNCTLNATQNGLRIKTWQGGS-GYARKITFNDITLTDV 252 (346)
Q Consensus 213 i~v~n~~~~~~~~gi~i~s~~~~~-g~v~nI~~~ni~~~~~ 252 (346)
|++++|.|.+...+.-+....... ....+|+|.++.+.++
T Consensus 104 vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 104 VTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 999999999888787776532211 2245788888777654
No 74
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.09 E-value=0.0022 Score=56.67 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=60.6
Q ss_pred eeeec-CcccEEEEeeEEec----------------CCceEEeCCCceeEEEEeeEEcCC---------ce-eEEecccC
Q 039868 151 GIDIS-ASQNIHILNSNIAT----------------GDDCIAINTGSSQINVTGLTCGPG---------HG-ISIGSLGK 203 (346)
Q Consensus 151 GI~i~-~s~nv~I~n~~i~~----------------gdD~i~i~~gs~nv~I~n~~~~~~---------~g-i~igs~~~ 203 (346)
|+.+. .++||.|+|.+|+. ..|++.+.. ++||.|.+|++..+ +| +.+.
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~-~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~---- 112 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDN-SSNVWIDHCSFSWGNFECNSDSSDGLIDIK---- 112 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEES-TEEEEEES-EEEETTS-GGGSSSSSSEEEE----
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEe-cccEEEeccEEeccccccccccCCceEEEE----
Confidence 56665 78999999999987 458899985 78999999999754 33 4542
Q ss_pred CCCCCCEeEEEEEeeEEeCCCceEEEEEecCCC--ceEEeEEEEeeEEecC
Q 039868 204 QGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGS--GYARKITFNDITLTDV 252 (346)
Q Consensus 204 ~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~--g~v~nI~~~ni~~~~~ 252 (346)
....+|+|++|.|.+...+.-+....... .. .+|||-.+.+.++
T Consensus 113 ----~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 113 ----KGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp ----SSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred ----eCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 34589999999998876555554431111 12 7777777776654
No 75
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.13 Score=48.21 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred cccccCCceEEEeEEEEcCCC---CCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcC
Q 039868 125 WWKLCSDDATLSNLHISAPES---SPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGP 192 (346)
Q Consensus 125 ~~~~~~~nv~i~~~~I~~~~~---~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~ 192 (346)
.|-....++.|++.+|..-.+ ..-+.||.+.+++++.|....|.-+.|||-.+. |++-.|+++.++.
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~ 192 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRD 192 (408)
T ss_pred EEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhh
Confidence 344434788888888886433 245789999999999999999999999998876 6667777776653
No 76
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=96.77 E-value=0.062 Score=47.66 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=79.4
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec-CCceEEeCCCceeEEEEeeEEcCCce--eEEecccCCCCC
Q 039868 131 DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT-GDDCIAINTGSSQINVTGLTCGPGHG--ISIGSLGKQGEA 207 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~-gdD~i~i~~gs~nv~I~n~~~~~~~g--i~igs~~~~~~~ 207 (346)
...+|+|+.|-. +..||||..+ +.+|+|++... +.|+++++..+..++|.+.-..++.. |..-.
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------- 127 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------- 127 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S-------
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecC-------
Confidence 455677777754 4679999997 78999999986 89999999865578888877665544 44422
Q ss_pred CCEeEEEEEeeEEeCCCceEEEEEecC---CCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEe
Q 039868 208 AAVEEVHVKNCTLNATQNGLRIKTWQG---GSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTG 284 (346)
Q Consensus 208 ~~~~ni~v~n~~~~~~~~gi~i~s~~~---~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~n 284 (346)
--.++|+|-+..+. |--..+... ..+.-|+|.+++........-+.|...|.+ ..+|++++++.
T Consensus 128 --~Gtv~I~nF~a~d~--GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD---------~ati~~~~~~~ 194 (215)
T PF03211_consen 128 --GGTVTIKNFYAEDF--GKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD---------TATISNSCIKG 194 (215)
T ss_dssp --SEEEEEEEEEEEEE--EEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT---------TEEEEEEEEEE
T ss_pred --ceeEEEEeEEEcCC--CEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC---------eEEEEEEEecC
Confidence 13677888665543 333334321 113456777777665443333445555443 55788887776
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=96.42 E-value=0.099 Score=48.03 Aligned_cols=165 Identities=16% Similarity=0.276 Sum_probs=77.5
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeec---CcccEEEEeeEEe-----cCCc----eEEeCC-----------CceeEEEEe
Q 039868 131 DDATLSNLHISAPESSPNTDGIDIS---ASQNIHILNSNIA-----TGDD----CIAINT-----------GSSQINVTG 187 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~---~s~nv~I~n~~i~-----~gdD----~i~i~~-----------gs~nv~I~n 187 (346)
..+.|.++++.. ..+|.|.+. .-+++.|.+-.|. +|.- +|-+-. ..+|..+-|
T Consensus 177 dgaritn~rfs~----lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvan 252 (464)
T PRK10123 177 IGANITNCKFSD----LQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVAN 252 (464)
T ss_pred ccceeecccccc----ccCceEEEEEEecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEe
Confidence 344444444443 457777764 3467777665553 2211 111111 036777777
Q ss_pred eEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCc-eE---EEEEecCCCceEEeEEEEeeEEecCCc-cE---EE
Q 039868 188 LTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQN-GL---RIKTWQGGSGYARKITFNDITLTDVDN-PI---II 258 (346)
Q Consensus 188 ~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~-gi---~i~s~~~~~g~v~nI~~~ni~~~~~~~-~i---~i 258 (346)
.+=.+++- +-+.. | ...-++||.-+|++=.-+.. || .+..+. ..|..++||.|.+..- -| .|
T Consensus 253 itgs~crqlvhven-g---khfvirnvkaknitpdfskkagidnatvaiyg-----cdnfvidni~mvnsagmligygvi 323 (464)
T PRK10123 253 ITGSDCRQLIHVEN-G---KHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-----CDNFVIDNIEMINSAGMLIGYGVI 323 (464)
T ss_pred ccCcChhheEEecC-C---cEEEEEeeeccccCCCchhhcCCCcceEEEEc-----ccceEEeccccccccccEEEeeee
Confidence 66444433 34421 1 13446666666665432211 21 121221 3577888888877542 11 13
Q ss_pred EeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCCCCeecEEEEeEEEEe
Q 039868 259 DQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIAS 317 (346)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~~~nv~v~~ 317 (346)
+..|-+ -+....+.||.++|-+.... -..+.+.. ...-+=+.+.|+.+..
T Consensus 324 kg~yls------ipqnfkln~i~ldn~~l~yk-lrgiqiss--gnatsfvaitn~~mkr 373 (464)
T PRK10123 324 KGKYLS------IPQNFKLNNIQLDNTHLAYK-LRGIQISA--GNAVSFVALTNIEMKR 373 (464)
T ss_pred eccEec------ccccceeceEeeccccccee-eeeeEecc--CCcceEEEEeeeehhh
Confidence 333333 12344677777777665432 22445542 2222334444554443
No 78
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=92.49 E-value=4.5 Score=36.89 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=67.3
Q ss_pred eeecCcccEEEEeeEEecCCc----eEEeCCCceeEEEEeeEEcCC--ceeEEecccCCCCCCCEeEEEEEeeEEeCCCc
Q 039868 152 IDISASQNIHILNSNIATGDD----CIAINTGSSQINVTGLTCGPG--HGISIGSLGKQGEAAAVEEVHVKNCTLNATQN 225 (346)
Q Consensus 152 I~i~~s~nv~I~n~~i~~gdD----~i~i~~gs~nv~I~n~~~~~~--~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~ 225 (346)
+.+....+.+|+..+|.+... +|++.+ .+.+|+||+|.+. +||.+-... ....+.+++|+++.+.....
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ies--s~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~ 165 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIES--SSPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKT 165 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEec--CCcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCc
Confidence 444455777888888887642 677865 3999999999864 577763221 03567888899999998888
Q ss_pred eEEEEEecCCCceEEeEEEEeeEEecCCccEEEEe
Q 039868 226 GLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQ 260 (346)
Q Consensus 226 gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~ 260 (346)
|+.+..... + +.+ .++|..+++...+|.+..
T Consensus 166 Gi~i~~~~~--~-~~n-~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 166 GISISDNAA--P-VEN-KIENNIIENNNIGIVAIG 196 (246)
T ss_pred CeEEEcccC--C-ccc-eeeccEEEeCCcCeEeec
Confidence 998865432 2 333 346666666555776553
No 79
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=92.00 E-value=2.6 Score=42.44 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=73.2
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCC
Q 039868 131 DDATLSNLHISAPESSPNTDGIDIS-ASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAA 209 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~-~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~ 209 (346)
+++..+|++|.|.........+-+. .+....+.+|.|....|-+-.+.+ .-++++|++.+.-.+-+|.
T Consensus 270 ~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~--------- 338 (497)
T PLN02698 270 DGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN--------- 338 (497)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc---------
Confidence 8999999999996543232334432 358999999999998887766652 4588999998776666664
Q ss_pred EeEEEEEeeEEeCCCc--e--EEEEEecCCC--ceEEeEEEEeeEEecCC
Q 039868 210 VEEVHVKNCTLNATQN--G--LRIKTWQGGS--GYARKITFNDITLTDVD 253 (346)
Q Consensus 210 ~~ni~v~n~~~~~~~~--g--i~i~s~~~~~--g~v~nI~~~ni~~~~~~ 253 (346)
-...|+||++..... + -.|... ++. ..-..+.|.|+++....
T Consensus 339 -a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 -AAAVFQNCYLFLRRPHGKSYNVILAN-GRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -cceeecccEEEEecCCCCCceEEEec-CCCCCCCCceEEEEeeEEecCC
Confidence 256888898864211 1 123222 211 23456889999987643
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.93 E-value=0.22 Score=32.30 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=28.4
Q ss_pred eeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEc
Q 039868 151 GIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCG 191 (346)
Q Consensus 151 GI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~ 191 (346)
||.+..|.+.+|+++++....++|.+.. +.+-+|+++++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEE
Confidence 5777777777788888877666887766 556666666654
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.68 E-value=5.4 Score=38.66 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=17.1
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec
Q 039868 131 DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT 169 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~ 169 (346)
.+|++.|+.+.... ...|+-+.+..++++.+|.|.+
T Consensus 121 ~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~g 156 (386)
T PF01696_consen 121 EGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFG 156 (386)
T ss_pred eeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEec
Confidence 44555555555421 1234444444555555555544
No 82
>PLN02773 pectinesterase
Probab=90.66 E-value=8.1 Score=36.64 Aligned_cols=79 Identities=5% Similarity=0.063 Sum_probs=54.0
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
++++..+|++|.|. ..++++....+.+.+.||.|.+..+ +-... ..-.|+||++.+.-.-|. .
T Consensus 101 a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~----------gr~yf~~c~IeG~VDFIF-G 169 (317)
T PLN02773 101 GEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY----------GKQYLRDCYIEGSVDFIF-G 169 (317)
T ss_pred CCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC----------CCEEEEeeEEeecccEEe-e
Confidence 47888888888763 3577887778899999999876544 44321 246899999988754442 1
Q ss_pred EecCCCceEEeEEEEeeEEecCCc
Q 039868 231 TWQGGSGYARKITFNDITLTDVDN 254 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~~~ 254 (346)
. -...|++|++.....
T Consensus 170 ~--------g~a~Fe~c~i~s~~~ 185 (317)
T PLN02773 170 N--------STALLEHCHIHCKSA 185 (317)
T ss_pred c--------cEEEEEeeEEEEccC
Confidence 1 235789998876543
No 83
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=88.77 E-value=6 Score=37.53 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=31.1
Q ss_pred EEEEeeeceEEEeceEEeC----------CCcccccccCCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEe
Q 039868 102 LYFVNVNGFTVNGNGEIDG----------QGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIA 168 (346)
Q Consensus 102 i~~~~~~ni~I~G~G~idg----------~g~~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~ 168 (346)
|.+.+..++.|+|. +|.| +|-..|.. +.+.|.+-+|. ...|||-.+.|++-.+++..++
T Consensus 123 i~l~~s~d~~i~~n-~i~G~~~~r~~~rGnGI~vyNa--~~a~V~~ndis-----y~rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 123 IYLHGSADVRIEGN-TIQGLADLRVAERGNGIYVYNA--PGALVVGNDIS-----YGRDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred EEEeccCceEEEee-EEeeccccchhhccCceEEEcC--CCcEEEcCccc-----cccceEEEcccccceecccchh
Confidence 44555566666664 3432 33344554 45555544443 3456666666666666555554
No 84
>PLN02480 Probable pectinesterase
Probab=88.21 E-value=16 Score=35.00 Aligned_cols=81 Identities=10% Similarity=0.168 Sum_probs=53.6
Q ss_pred eeecCcccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEE
Q 039868 152 IDISASQNIHILNSNIATG----------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTL 220 (346)
Q Consensus 152 I~i~~s~nv~I~n~~i~~g----------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~ 220 (346)
+.+.+ .+++++|++|+|. +-++++....+.+.++||.|.+..+ +-.. . ..-.|+||++
T Consensus 127 vtV~a-~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~-~---------gR~yf~~C~I 195 (343)
T PLN02480 127 FTVEA-PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY-K---------GRHYYHSCYI 195 (343)
T ss_pred EEEEC-CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC-C---------CCEEEEeCEE
Confidence 44443 7888888888874 3577776667899999999976554 3221 1 2458899999
Q ss_pred eCCCceEEEEEecCCCceEEeEEEEeeEEecC
Q 039868 221 NATQNGLRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 221 ~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
.+.-.-| + |. -...|+||++...
T Consensus 196 eG~VDFI-F----G~----g~a~fe~C~i~s~ 218 (343)
T PLN02480 196 QGSIDFI-F----GR----GRSIFHNCEIFVI 218 (343)
T ss_pred EeeeeEE-c----cc----eeEEEEccEEEEe
Confidence 8865433 1 11 2346888888754
No 85
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.56 E-value=8.9 Score=37.43 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=30.8
Q ss_pred eeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecC
Q 039868 181 SQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 181 ~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
.|=.|+|....++.|+-++-.| ..+.++||++++|. ..|+.++.+. -+|.||++-.+
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~~~~--------~~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIRGTN--------KVFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEECCS---------EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEeecC--------CceeeeEEEec
Confidence 3556777777777776665444 24667777777764 3466666542 25666666544
No 86
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=78.51 E-value=19 Score=31.26 Aligned_cols=41 Identities=7% Similarity=0.091 Sum_probs=24.2
Q ss_pred ceeEEEEeeEEcCC---cee--EEecccCCCCCCCEeEEEEEeeEEeCCCc
Q 039868 180 SSQINVTGLTCGPG---HGI--SIGSLGKQGEAAAVEEVHVKNCTLNATQN 225 (346)
Q Consensus 180 s~nv~I~n~~~~~~---~gi--~igs~~~~~~~~~~~ni~v~n~~~~~~~~ 225 (346)
.+||.|.++.|... ..+ .-|-. ..+..|.+|||++|.+...
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv-----~sGF~ntlIENNVfDG~y~ 78 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIV-----TSGFYNTLIENNVFDGVYH 78 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEE-----eccccccEEEeeeeccccc
Confidence 45777777777642 111 11111 3456788888888887754
No 87
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=76.57 E-value=42 Score=29.19 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=59.0
Q ss_pred eeEEEEeeEEcCC--ceeEE-ecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCC--CceEEeEEEEeeEEecCCcc
Q 039868 181 SQINVTGLTCGPG--HGISI-GSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGG--SGYARKITFNDITLTDVDNP 255 (346)
Q Consensus 181 ~nv~I~n~~~~~~--~gi~i-gs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~~~ 255 (346)
.+|.|-|+++++. -||-| |..+.+ +....+||+|+++.|..++.--.+. |.++ .....|..+||..++.+-.+
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~y-sk~~a~nVhIhhN~fY~tGtn~~~~-wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSY-SKDSAKNVHIHHNIFYDTGTNPNID-WVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCC-CccccccEEEECcEeecCCcCCCCc-eeeeEEeccccccEEEeeeecccccc
Confidence 4788888888865 45554 443322 3456679999999999876422221 1110 02346778899999888665
Q ss_pred EEEEeeeCCCCCCCC-CCCceeEEeEEEEeEE
Q 039868 256 IIIDQFYCPHEQCSN-ETNAVKISDVSYTGIH 286 (346)
Q Consensus 256 i~i~~~~~~~~~~~~-~~~~~~i~nI~~~ni~ 286 (346)
..+.+.... ...|. ..-...+||-.|.|-.
T Consensus 80 ai~~~y~~~-~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDY-DLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEeccc-ccCCCCCceEEEEEcceEeeee
Confidence 444433211 11111 1223467777777765
No 88
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=76.51 E-value=98 Score=31.94 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.+++..+|++|.|. ..++++....+...+.+|.|.+..+ +-..+ ..-.|+||+|.++-.-|+ +
T Consensus 339 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G 407 (566)
T PLN02713 339 GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS----------LRQFYRECDIYGTVDFIF-G 407 (566)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC----------CCEEEEeeEEecccceec-c
Confidence 37788888888872 4578888878899999999976554 44432 134899999988754331 1
Q ss_pred EecCCCceEEeEEEEeeEEecC
Q 039868 231 TWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
. -...|+||.+...
T Consensus 408 ~--------a~avfq~C~i~~~ 421 (566)
T PLN02713 408 N--------AAVVFQNCNLYPR 421 (566)
T ss_pred c--------ceEEEeccEEEEe
Confidence 1 2356888888643
No 89
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=74.80 E-value=58 Score=32.19 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=67.0
Q ss_pred cccEEEEeeEEecC---------CceEEeCCCceeEEEEeeEEcCCce-eEEecccC-C-CCCCCEeEEEEEeeEEeCCC
Q 039868 157 SQNIHILNSNIATG---------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGK-Q-GEAAAVEEVHVKNCTLNATQ 224 (346)
Q Consensus 157 s~nv~I~n~~i~~g---------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~-~-~~~~~~~ni~v~n~~~~~~~ 224 (346)
+++++.+|++|.|. ..++++....+.+.+.+|.|.+... +-.++.+. . ........-.|+||+|.+.-
T Consensus 205 ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~V 284 (422)
T PRK10531 205 NNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDV 284 (422)
T ss_pred CCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecc
Confidence 47778888888763 2467777767899999999986554 54432110 0 00112335789999998875
Q ss_pred ceEEEEEecCCCceEEeEEEEeeEEecCCc----cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEec
Q 039868 225 NGLRIKTWQGGSGYARKITFNDITLTDVDN----PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSI 290 (346)
Q Consensus 225 ~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 290 (346)
.-|+ |. -...|+||++..... .-.|... .. ....-..+.|.|.+++..
T Consensus 285 DFIF-----G~----g~AvFenC~I~s~~~~~~~~g~ITA~-~t--------~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 285 DFVF-----GR----GAVVFDNTEFRVVNSRTQQEAYVFAP-AT--------LPNIYYGFLAINSRFNAS 336 (422)
T ss_pred cEEc-----cC----ceEEEEcCEEEEecCCCCCceEEEec-CC--------CCCCCCEEEEECCEEecC
Confidence 4331 11 135688888876432 2233321 00 111234677888877764
No 90
>PLN02665 pectinesterase family protein
Probab=74.62 E-value=84 Score=30.49 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=50.8
Q ss_pred cccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCc
Q 039868 157 SQNIHILNSNIATG----------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQN 225 (346)
Q Consensus 157 s~nv~I~n~~i~~g----------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~ 225 (346)
+++++.+|++|+|. ..++++....+...+.||.|.+.++ +-.. . -.-.|+||++.++-.
T Consensus 153 a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~-~---------gr~yf~~CyIeG~VD 222 (366)
T PLN02665 153 SDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD-K---------GRHFFKDCYIEGTVD 222 (366)
T ss_pred CCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeC-C---------CCEEEEeeEEeeccc
Confidence 46677777777662 2467777667889999999986655 3321 1 245899999988754
Q ss_pred eEEEEEecCCCceEEeEEEEeeEEecCCc
Q 039868 226 GLRIKTWQGGSGYARKITFNDITLTDVDN 254 (346)
Q Consensus 226 gi~i~s~~~~~g~v~nI~~~ni~~~~~~~ 254 (346)
-|. +. -...|++|++.....
T Consensus 223 FIF-G~--------g~a~fe~C~i~s~~~ 242 (366)
T PLN02665 223 FIF-GS--------GKSLYLNTELHVVGD 242 (366)
T ss_pred eec-cc--------cceeeEccEEEEecC
Confidence 331 11 134688888876543
No 91
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=73.15 E-value=1.2e+02 Score=31.19 Aligned_cols=77 Identities=8% Similarity=0.080 Sum_probs=51.8
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.+++..+|+.|.|. ..++++....+.+.+.||.|.+..+ +-..+ ..-.++||++.++-.-| ++
T Consensus 318 ~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~----------~rqyy~~C~I~GtVDFI-FG 386 (537)
T PLN02506 318 GRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS----------LRQFYRECEIYGTIDFI-FG 386 (537)
T ss_pred cCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC----------CceEEEeeEEecccceE-cc
Confidence 46777777887763 4678888778899999999876544 33322 13489999998875433 11
Q ss_pred EecCCCceEEeEEEEeeEEecC
Q 039868 231 TWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
. -...|+||++...
T Consensus 387 ~--------a~avfq~C~i~~r 400 (537)
T PLN02506 387 N--------GAAVLQNCKIYTR 400 (537)
T ss_pred C--------ceeEEeccEEEEc
Confidence 1 2356888888753
No 92
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=72.84 E-value=1.2e+02 Score=31.07 Aligned_cols=77 Identities=9% Similarity=0.134 Sum_probs=50.6
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
..++..+|++|.|. ..++++....+...+.||.|.+..+ +-..+ ..-.++||++.++-.-|. +
T Consensus 312 ~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G 380 (529)
T PLN02170 312 GDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS----------KRQFYRETDITGTVDFIF-G 380 (529)
T ss_pred cCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC----------CCEEEEeeEEccccceec-c
Confidence 36677777777752 4578887778899999999976544 43322 134789999988754331 1
Q ss_pred EecCCCceEEeEEEEeeEEecC
Q 039868 231 TWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
. -...|+||++...
T Consensus 381 ~--------a~avFq~C~I~~~ 394 (529)
T PLN02170 381 N--------SAVVFQSCNIAAR 394 (529)
T ss_pred c--------ceEEEeccEEEEe
Confidence 1 2356888888653
No 93
>PLN02916 pectinesterase family protein
Probab=71.82 E-value=1.2e+02 Score=30.78 Aligned_cols=75 Identities=8% Similarity=0.092 Sum_probs=49.5
Q ss_pred ccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
.++..+|++|.|. ..++++....+...+.+|.|.+..+ +-..+ ..-.|+||+|.++-.-|+ +.
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G~ 345 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS----------LRQFYRDCHIYGTIDFIF-GD 345 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC----------CCEEEEecEEecccceec-cC
Confidence 5667777777652 4578887778889999999876544 44432 134889999988754331 11
Q ss_pred ecCCCceEEeEEEEeeEEec
Q 039868 232 WQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~ 251 (346)
-...|+||++..
T Consensus 346 --------a~avFq~C~I~~ 357 (502)
T PLN02916 346 --------AAVVFQNCDIFV 357 (502)
T ss_pred --------ceEEEecCEEEE
Confidence 235688888864
No 94
>PLN02432 putative pectinesterase
Probab=69.93 E-value=98 Score=29.05 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=50.0
Q ss_pred ccEEEEeeEEecC----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEe
Q 039868 158 QNIHILNSNIATG----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTW 232 (346)
Q Consensus 158 ~nv~I~n~~i~~g----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~ 232 (346)
.++..+|++|.|. ..++++....+...+.||.|.+..+ +-... ..-.|+||.+.++-.-|.
T Consensus 94 ~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~----------gr~yf~~c~I~G~VDFIF---- 159 (293)
T PLN02432 94 SDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT----------GRHYYRNCYIEGATDFIC---- 159 (293)
T ss_pred CCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECC----------CCEEEEeCEEEecccEEe----
Confidence 6677777777762 4577777777899999999876544 33211 145899999988754332
Q ss_pred cCCCceEEeEEEEeeEEecC
Q 039868 233 QGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 233 ~~~~g~v~nI~~~ni~~~~~ 252 (346)
|. -...|++|++...
T Consensus 160 -G~----g~a~Fe~c~i~s~ 174 (293)
T PLN02432 160 -GN----AASLFEKCHLHSL 174 (293)
T ss_pred -cC----ceEEEEeeEEEEe
Confidence 11 1256888888643
No 95
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=67.48 E-value=90 Score=32.84 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=48.6
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
.+++.+|+.|+| +..++++....+...+.||.|.+..+ +-..+ ..-.|+||++.++-.-|+
T Consensus 337 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF--- 403 (670)
T PLN02217 337 DHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS----------HRQFYRDCTISGTIDFLF--- 403 (670)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC----------CcEEEEeCEEEEeccEEe---
Confidence 567777777775 24678888778889999998875444 33322 234888899987654331
Q ss_pred ecCCCceEEeEEEEeeEEec
Q 039868 232 WQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~ 251 (346)
|. -...|+||++..
T Consensus 404 --G~----a~avfq~C~I~~ 417 (670)
T PLN02217 404 --GD----AAAVFQNCTLLV 417 (670)
T ss_pred --cC----ceEEEEccEEEE
Confidence 11 134677777764
No 96
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=66.83 E-value=18 Score=35.61 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=24.7
Q ss_pred CCeeeecC------cccEEEEeeEEecCC---ceEEeCCCceeEEEEeeEEcCCce-eEE
Q 039868 149 TDGIDISA------SQNIHILNSNIATGD---DCIAINTGSSQINVTGLTCGPGHG-ISI 198 (346)
Q Consensus 149 ~DGI~i~~------s~nv~I~n~~i~~gd---D~i~i~~gs~nv~I~n~~~~~~~g-i~i 198 (346)
...|.+.. ..+.+|++..|...| .-|++|| .+-+|++++|..+.| +.+
T Consensus 184 gEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvKS--~~N~ir~Ntf~es~G~ltl 241 (425)
T PF14592_consen 184 GETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVKS--SDNTIRNNTFRESQGSLTL 241 (425)
T ss_dssp --SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEES--BT-EEES-EEES-SSEEEE
T ss_pred ceeEEEecccccccccceeeecchhhhcCCceeEEEeec--CCceEeccEEEeccceEEE
Confidence 34466643 368889998887643 4688887 355677788877655 544
No 97
>PLN02682 pectinesterase family protein
Probab=65.41 E-value=1.4e+02 Score=29.06 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=50.2
Q ss_pred cccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCc
Q 039868 157 SQNIHILNSNIATG----------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQN 225 (346)
Q Consensus 157 s~nv~I~n~~i~~g----------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~ 225 (346)
..+++.+|++|.|. ..++++....+...+.||.|.+..+ +-.. ...-.|+||++.++-.
T Consensus 162 a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~----------~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 162 SPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH----------LGRHYFKDCYIEGSVD 231 (369)
T ss_pred CCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC----------CCCEEEEeeEEccccc
Confidence 35677777777762 2367877778899999999876544 3321 1245899999988754
Q ss_pred eEEEEEecCCCceEEeEEEEeeEEecC
Q 039868 226 GLRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 226 gi~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
-|. |. -...|++|++...
T Consensus 232 FIF-----G~----g~a~Fe~C~I~s~ 249 (369)
T PLN02682 232 FIF-----GN----GLSLYEGCHLHAI 249 (369)
T ss_pred EEe-----cC----ceEEEEccEEEEe
Confidence 331 11 2356888888753
No 98
>PLN02497 probable pectinesterase
Probab=64.63 E-value=1.3e+02 Score=28.67 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=49.3
Q ss_pred cccEEEEeeEEecCC------------ceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCC
Q 039868 157 SQNIHILNSNIATGD------------DCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNAT 223 (346)
Q Consensus 157 s~nv~I~n~~i~~gd------------D~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~ 223 (346)
+.++..+|++|.|.. .++++....+...+.||.|.+..+ +-..+ ..-.|+||++.++
T Consensus 114 a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~----------gRqyf~~C~IeG~ 183 (331)
T PLN02497 114 ADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD----------GRHYFKRCTIQGA 183 (331)
T ss_pred cCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC----------CcEEEEeCEEEec
Confidence 356777777776531 367777777899999999976544 32211 2458899999887
Q ss_pred CceEEEEEecCCCceEEeEEEEeeEEecC
Q 039868 224 QNGLRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 224 ~~gi~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
-.-|. |. -...|+||++...
T Consensus 184 VDFIF-----G~----g~a~Fe~C~I~s~ 203 (331)
T PLN02497 184 VDFIF-----GS----GQSIYESCVIQVL 203 (331)
T ss_pred ccEEc-----cC----ceEEEEccEEEEe
Confidence 54331 11 1346888888753
No 99
>PLN02176 putative pectinesterase
Probab=64.53 E-value=1.4e+02 Score=28.73 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred cccEEEEeeEEecC-----------CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCC
Q 039868 157 SQNIHILNSNIATG-----------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQ 224 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~ 224 (346)
+.++..+|++|.|. ..++++....+...+.||.|.+..+ +-..+ ..-.++||++.++-
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~----------gRqyf~~CyIeG~V 190 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK----------GRHYYKRCVISGGI 190 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC----------cCEEEEecEEEecc
Confidence 46677777777653 2467777667889999999876544 33321 24588999998875
Q ss_pred ceEEEEEecCCCceEEeEEEEeeEEecC
Q 039868 225 NGLRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 225 ~gi~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
.-|. |. -...|+||++...
T Consensus 191 DFIF-----G~----a~a~Fe~C~I~s~ 209 (340)
T PLN02176 191 DFIF-----GY----AQSIFEGCTLKLT 209 (340)
T ss_pred cEEe-----cC----ceEEEeccEEEEe
Confidence 4432 11 1356888888743
No 100
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=63.17 E-value=1.8e+02 Score=29.76 Aligned_cols=76 Identities=8% Similarity=0.072 Sum_probs=49.3
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
.+.+.+|++|.| +..++++....+...+.||.|.+..+ +-..+ ..-.++||++.++-.-|+ +.
T Consensus 312 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G~ 380 (539)
T PLN02995 312 LHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS----------QRQFYRECYIYGTVDFIF-GN 380 (539)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC----------CceEEEeeEEeeccceEe-cc
Confidence 566677777765 24678888878899999999875544 33221 134899999988754331 11
Q ss_pred ecCCCceEEeEEEEeeEEecC
Q 039868 232 WQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~ 252 (346)
-...|+||++...
T Consensus 381 --------a~avf~~C~i~~~ 393 (539)
T PLN02995 381 --------AAAVFQNCIILPR 393 (539)
T ss_pred --------cceEEeccEEEEe
Confidence 1346888887653
No 101
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=63.09 E-value=13 Score=23.68 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=26.8
Q ss_pred CceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEec
Q 039868 131 DDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIAT 169 (346)
Q Consensus 131 ~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~ 169 (346)
.+.+|++-+|.. +.+||++..|.+-+|++.++..
T Consensus 8 ~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 8 SNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 455577777775 5679999999999999988864
No 102
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=61.25 E-value=79 Score=31.15 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=37.6
Q ss_pred ceeEEEEeeEEcCC--ceeEEecccC------CC---------CCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeE
Q 039868 180 SSQINVTGLTCGPG--HGISIGSLGK------QG---------EAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKI 242 (346)
Q Consensus 180 s~nv~I~n~~~~~~--~gi~igs~~~------~~---------~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI 242 (346)
+-|..++++..-.. +|+.+++... +. -.+--.|=.|+|+...++. |+.+. +.+.+++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~l-GVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSL-GVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-S-SESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccc-eeeee-ecCCCceEeeE
Confidence 35778888875433 5777776532 11 0123356677788777765 55443 34677999999
Q ss_pred EEEeeEEecCCccEEEE
Q 039868 243 TFNDITLTDVDNPIIID 259 (346)
Q Consensus 243 ~~~ni~~~~~~~~i~i~ 259 (346)
+.+++. ..++++.
T Consensus 341 ~~~d~~----g~G~~~~ 353 (549)
T PF09251_consen 341 TVQDCA----GAGIFIR 353 (549)
T ss_dssp EEES-S----SESEEEE
T ss_pred Eeeccc----CCceEEe
Confidence 888764 3455554
No 103
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=60.37 E-value=2.1e+02 Score=29.47 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=51.4
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.+++..+|++|.|. ..++++...++.+.+.||.|.+..+ +-..+ ..-.++||+|.++-.-|+
T Consensus 329 ~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~rq~y~~C~I~GtVDFIF-- 396 (553)
T PLN02708 329 GDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS----------LRQFYKSCRIQGNVDFIF-- 396 (553)
T ss_pred cCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC----------CceEEEeeEEeecCCEEe--
Confidence 36777888888762 4578888778899999999876544 43322 134789999988754331
Q ss_pred EecCCCceEEeEEEEeeEEec
Q 039868 231 TWQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~ 251 (346)
|. -...|+||++.-
T Consensus 397 ---G~----a~avfq~c~i~~ 410 (553)
T PLN02708 397 ---GN----SAAVFQDCAILI 410 (553)
T ss_pred ---cC----ceEEEEccEEEE
Confidence 11 245788888863
No 104
>PLN02304 probable pectinesterase
Probab=59.30 E-value=1.8e+02 Score=28.37 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=47.0
Q ss_pred ccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCce
Q 039868 158 QNIHILNSNIATG----------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNG 226 (346)
Q Consensus 158 ~nv~I~n~~i~~g----------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~g 226 (346)
+++..+|++|.|. ..++++....+...+.||.|.+... +-... -.-.|+||++.++-.-
T Consensus 162 ~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~----------gR~Yf~~CyIeG~VDF 231 (379)
T PLN02304 162 SNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR----------GRHYFKDCYIQGSIDF 231 (379)
T ss_pred CCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC----------CCEEEEeeEEcccccE
Confidence 5556666666542 2477777777889999998876544 33211 1357899999886543
Q ss_pred EEEEEecCCCceEEeEEEEeeEEecC
Q 039868 227 LRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 227 i~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
| + |. -...|+||++...
T Consensus 232 I-F----G~----g~A~Fe~C~I~s~ 248 (379)
T PLN02304 232 I-F----GD----ARSLYENCRLISM 248 (379)
T ss_pred E-e----cc----ceEEEEccEEEEe
Confidence 3 1 11 1236888887754
No 105
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=59.09 E-value=2e+02 Score=29.65 Aligned_cols=76 Identities=7% Similarity=0.116 Sum_probs=49.5
Q ss_pred cccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.++++.+|+.|.| ++.++++....+...+.||.|.+... +-..+ ..-.++||++.++-.-|+ +
T Consensus 344 ~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~----------~rq~y~~C~I~GtvDFIF-G 412 (565)
T PLN02468 344 GKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA----------QRQFYRECNIYGTVDFIF-G 412 (565)
T ss_pred CCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC----------CceEEEeeEEecccceee-c
Confidence 3677778888875 24578887777889999998865443 33322 134688999988754331 1
Q ss_pred EecCCCceEEeEEEEeeEEec
Q 039868 231 TWQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~ 251 (346)
. -...|+||.+..
T Consensus 413 ~--------a~avfq~c~i~~ 425 (565)
T PLN02468 413 N--------SAVVFQNCNILP 425 (565)
T ss_pred c--------ceEEEeccEEEE
Confidence 1 235688888864
No 106
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=58.58 E-value=1.6e+02 Score=30.08 Aligned_cols=132 Identities=8% Similarity=-0.005 Sum_probs=73.4
Q ss_pred ccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
++...+|+.|.|. ..++++....+...+.||.|.+..+ +-..+ ..-.++||++.++-.-|+
T Consensus 293 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF--- 359 (520)
T PLN02201 293 RGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT----------MRQFYRECRITGTVDFIF--- 359 (520)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC----------CCEEEEeeEEeecccEEe---
Confidence 5666777777652 3567777767788888888875544 33322 123778888887654331
Q ss_pred ecCCCceEEeEEEEeeEEecCCc----cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccC-------ceEEEEcc
Q 039868 232 WQGGSGYARKITFNDITLTDVDN----PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQ-------DAIALNCS 300 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~-------~~~~i~~~ 300 (346)
|. -...|+||++..... .-.|...-+. +...-..+.|.|.+++.... ..++ -|.
T Consensus 360 --G~----a~avf~~C~i~~~~~~~~~~~~iTAq~r~--------~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~y-LGR 424 (520)
T PLN02201 360 --GD----ATAVFQNCQILAKKGLPNQKNTITAQGRK--------DPNQPTGFSIQFSNISADTDLLPYLNTTATY-LGR 424 (520)
T ss_pred --cC----ceEEEEccEEEEecCCCCCCceEEecCCC--------CCCCCcEEEEEeeEEecCccccccccccceE-eec
Confidence 11 235688888765321 1223221000 11123467788888765321 1222 355
Q ss_pred CCCCeecEEEEeEEEEe
Q 039868 301 RTVGCDNIVLEHIHIAS 317 (346)
Q Consensus 301 ~~~~~~ni~~~nv~v~~ 317 (346)
|=.+-..+.|-+..+..
T Consensus 425 PW~~ysrvv~~~t~l~~ 441 (520)
T PLN02201 425 PWKLYSRTVFMQNYMSD 441 (520)
T ss_pred CCCCCceEEEEecCcCC
Confidence 55566777787776654
No 107
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=58.01 E-value=1e+02 Score=28.91 Aligned_cols=133 Identities=9% Similarity=0.065 Sum_probs=64.4
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.++++++|++|.|. ..++++....+.+.+.||.|.+... +-..+ ....|+||++.+.-.-|
T Consensus 86 a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QDTL~~~~----------~r~y~~~c~IeG~vDFI--- 152 (298)
T PF01095_consen 86 ADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQDTLYANG----------GRQYFKNCYIEGNVDFI--- 152 (298)
T ss_dssp STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT-EEE-S----------SEEEEES-EEEESEEEE---
T ss_pred ccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccceeeecc----------ceeEEEeeEEEecCcEE---
Confidence 47788888888762 2345555556788999999976544 44321 25689999998865433
Q ss_pred EecCCCceEEeEEEEeeEEecCC----ccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccC-------ceEEEEc
Q 039868 231 TWQGGSGYARKITFNDITLTDVD----NPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQ-------DAIALNC 299 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~-------~~~~i~~ 299 (346)
+.. + ...|+|+++.... ....|...-.. +...-..+.|.|.+++.... ...+ .|
T Consensus 153 -fG~--~---~a~f~~c~i~~~~~~~~~~~~ItA~~r~--------~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~y-LG 217 (298)
T PF01095_consen 153 -FGN--G---TAVFENCTIHSRRPGGGQGGYITAQGRT--------SPSQKSGFVFDNCTITGDSGVSPSYSDGSVY-LG 217 (298)
T ss_dssp -EES--S---EEEEES-EEEE--SSTSSTEEEEEE-----------CTTSS-EEEEES-EEEESTTTCGGCCCSTEE-EE
T ss_pred -ECC--e---eEEeeeeEEEEeccccccceeEEeCCcc--------ccCCCeEEEEEEeEEecCccccccccceeEE-ec
Confidence 111 1 2357888776432 12344432111 01123467888888876422 1223 33
Q ss_pred cCCCCeecEEEEeEEEEe
Q 039868 300 SRTVGCDNIVLEHIHIAS 317 (346)
Q Consensus 300 ~~~~~~~ni~~~nv~v~~ 317 (346)
.|=.+-..+.|-|..+..
T Consensus 218 RpW~~~s~vvf~~t~m~~ 235 (298)
T PF01095_consen 218 RPWGPYSRVVFINTYMDD 235 (298)
T ss_dssp --SSEETEEEEES-EE-T
T ss_pred CcccceeeEEEEccccCC
Confidence 444444456666666653
No 108
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=57.17 E-value=12 Score=20.09 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=10.8
Q ss_pred EEEEEeeEEeCCCc-eEEEE
Q 039868 212 EVHVKNCTLNATQN-GLRIK 230 (346)
Q Consensus 212 ni~v~n~~~~~~~~-gi~i~ 230 (346)
+++|++|++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45666666665544 55554
No 109
>PLN02671 pectinesterase
Probab=56.66 E-value=1.9e+02 Score=27.93 Aligned_cols=62 Identities=6% Similarity=0.074 Sum_probs=39.4
Q ss_pred ceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEe
Q 039868 172 DCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLT 250 (346)
Q Consensus 172 D~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~ 250 (346)
.++++....+.+.+.||.|.+..+ +-.. . -.-.|+||++.++-.-|. .. -...|+||++.
T Consensus 177 QAVALrv~gDra~f~~c~f~G~QDTLy~~-~---------gR~yf~~CyIeG~VDFIF-G~--------g~A~Fe~C~I~ 237 (359)
T PLN02671 177 QAVALRISGDKAFFYKVRVLGAQDTLLDE-T---------GSHYFYQCYIQGSVDFIF-GN--------AKSLYQDCVIQ 237 (359)
T ss_pred cEEEEEEcCccEEEEcceEeccccccEeC-C---------CcEEEEecEEEEeccEEe-cc--------eeEEEeccEEE
Confidence 467776667889999998876554 3221 1 134888999988654332 11 13568888887
Q ss_pred cC
Q 039868 251 DV 252 (346)
Q Consensus 251 ~~ 252 (346)
..
T Consensus 238 s~ 239 (359)
T PLN02671 238 ST 239 (359)
T ss_pred Ee
Confidence 54
No 110
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=53.95 E-value=1.3e+02 Score=30.85 Aligned_cols=133 Identities=6% Similarity=-0.015 Sum_probs=75.0
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
+++..+|+.|+| ++.++++...++...+.||.|.+..+ +-..+ ..-.++||++.++-.-|+ +.
T Consensus 323 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G~ 391 (548)
T PLN02301 323 DGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS----------LRQFYRDSYITGTVDFIF-GN 391 (548)
T ss_pred CceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC----------CcEEEEeeEEEeccceec-cc
Confidence 666777777765 24678887777888899998875544 43322 124888899887654331 11
Q ss_pred ecCCCceEEeEEEEeeEEecCCc----cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCc------eEEEEccC
Q 039868 232 WQGGSGYARKITFNDITLTDVDN----PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD------AIALNCSR 301 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~------~~~i~~~~ 301 (346)
-...|+||++..... .-.|...-+. ....-..+.|.|.+++..... .-..-|.|
T Consensus 392 --------a~avfq~c~i~~~~~~~~~~~~iTAqgr~--------~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRP 455 (548)
T PLN02301 392 --------AAVVFQNCKIVARKPMAGQKNMVTAQGRT--------DPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRP 455 (548)
T ss_pred --------ceeEEeccEEEEecCCCCCCceEEecCCC--------CCCCCCEEEEEeeEEecCccccccccccceeeecC
Confidence 235688888864321 1122221000 111234788888888754210 01234555
Q ss_pred CCCeecEEEEeEEEEe
Q 039868 302 TVGCDNIVLEHIHIAS 317 (346)
Q Consensus 302 ~~~~~ni~~~nv~v~~ 317 (346)
=.+-..+.|-+-.+..
T Consensus 456 W~~ysr~V~~~s~l~~ 471 (548)
T PLN02301 456 WKEYSRTVVMQSYIDD 471 (548)
T ss_pred CCCCceEEEEecccCC
Confidence 5556667777766653
No 111
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=52.37 E-value=2.8e+02 Score=28.42 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=50.2
Q ss_pred ccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
+++..+|++|.|. ..++++....+...+.+|.|.+..+ +-..+ ..-.|+||+|.++-.-| +
T Consensus 305 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~IeGtVDFI-F-- 371 (530)
T PLN02933 305 KGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS----------AKQFYRECDIYGTIDFI-F-- 371 (530)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC----------CceEEEeeEEeccccee-c--
Confidence 6677777777752 4678888878899999999976544 33322 12489999998875433 1
Q ss_pred ecCCCceEEeEEEEeeEEecC
Q 039868 232 WQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~ 252 (346)
|. -...|+||.+...
T Consensus 372 --G~----a~avFq~C~i~~~ 386 (530)
T PLN02933 372 --GN----AAVVFQNCSLYAR 386 (530)
T ss_pred --cC----ceEEEeccEEEEe
Confidence 11 1246888887643
No 112
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=51.48 E-value=1.3e+02 Score=31.28 Aligned_cols=133 Identities=7% Similarity=0.013 Sum_probs=73.3
Q ss_pred ccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
++.+.+|++|.|. ..++++....+...+.||.|.+..+ +-..+ ..-.|+||++.++-.-|+ +.
T Consensus 360 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G~ 428 (587)
T PLN02484 360 AGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS----------NRQFFRECDIYGTVDFIF-GN 428 (587)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC----------CcEEEEecEEEeccceec-cc
Confidence 5666666666652 4567777777788888888865444 33321 133788888887643331 11
Q ss_pred ecCCCceEEeEEEEeeEEecCC----ccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCc-----eE-EEEccC
Q 039868 232 WQGGSGYARKITFNDITLTDVD----NPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD-----AI-ALNCSR 301 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~-----~~-~i~~~~ 301 (346)
-...|+||++.... ..-.|...-+. ....-..+.|.|.+++..... .. ..-|.|
T Consensus 429 --------a~avfq~C~i~~~~~~~~~~~~ITAq~r~--------~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRP 492 (587)
T PLN02484 429 --------AAVVLQNCSIYARKPMAQQKNTITAQNRK--------DPNQNTGISIHACRILAASDLAASKGSFPTYLGRP 492 (587)
T ss_pred --------ceeEEeccEEEEecCCCCCceEEEecCCC--------CCCCCcEEEEEeeEEecCCccccccCccceeccCC
Confidence 23468888886432 11223321110 111234788888888753210 11 234555
Q ss_pred CCCeecEEEEeEEEEe
Q 039868 302 TVGCDNIVLEHIHIAS 317 (346)
Q Consensus 302 ~~~~~ni~~~nv~v~~ 317 (346)
=.+-..+.|-+-.+..
T Consensus 493 W~~ysrvV~~~s~i~~ 508 (587)
T PLN02484 493 WKLYSRTVYMMSYMGD 508 (587)
T ss_pred CCCCceEEEEecccCC
Confidence 5556677777766654
No 113
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=51.24 E-value=1.2e+02 Score=30.74 Aligned_cols=133 Identities=9% Similarity=0.007 Sum_probs=77.2
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
++...+|++|+| ++.++++....+...+.||.|.+..+ +-..+. .-.|+||+|.++-.-|+ +.
T Consensus 270 ~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~----------rqyy~~C~I~G~vDFIF-G~ 338 (497)
T PLN02698 270 DGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL----------RQFYRECDIYGTIDFIF-GN 338 (497)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC----------cEEEEeeEEEeccceEe-cc
Confidence 566777777765 24678888878899999999876544 443321 23888999988654432 11
Q ss_pred ecCCCceEEeEEEEeeEEecCCc----cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCc-e-----EEEEccC
Q 039868 232 WQGGSGYARKITFNDITLTDVDN----PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD-A-----IALNCSR 301 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~-~-----~~i~~~~ 301 (346)
-...|+||++..... .-.|...-+. ....-..+.|.|.+++..... + -..-|.|
T Consensus 339 --------a~avf~~C~i~~~~~~~~~~~~iTAq~r~--------~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRP 402 (497)
T PLN02698 339 --------AAAVFQNCYLFLRRPHGKSYNVILANGRS--------DPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRP 402 (497)
T ss_pred --------cceeecccEEEEecCCCCCceEEEecCCC--------CCCCCceEEEEeeEEecCCcccccccccceeccCC
Confidence 124688888864321 0122221010 011224788888888754321 1 1234555
Q ss_pred CCCeecEEEEeEEEEe
Q 039868 302 TVGCDNIVLEHIHIAS 317 (346)
Q Consensus 302 ~~~~~ni~~~nv~v~~ 317 (346)
=.+-..+.|-+-.+..
T Consensus 403 W~~ysr~vf~~s~l~~ 418 (497)
T PLN02698 403 WKKYSRAIVMESYIDD 418 (497)
T ss_pred CCCCceEEEEecccCC
Confidence 5556677777776654
No 114
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=49.82 E-value=2.9e+02 Score=28.34 Aligned_cols=77 Identities=9% Similarity=0.155 Sum_probs=49.9
Q ss_pred cccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
..++..+|+.|.| ++.++++....+.+.+.+|.|.+..+ +-..+ ..-.++||+|.++-.-|. +
T Consensus 316 ~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G 384 (541)
T PLN02416 316 GEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS----------FRQFYRECDIYGTIDYIF-G 384 (541)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC----------CceEEEeeEEeeccceee-c
Confidence 3677777777775 24678887777889999998875544 33322 234888999988654331 1
Q ss_pred EecCCCceEEeEEEEeeEEecC
Q 039868 231 TWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
. -...|+||++...
T Consensus 385 ~--------a~avfq~c~i~~~ 398 (541)
T PLN02416 385 N--------AAVVFQACNIVSK 398 (541)
T ss_pred c--------ceEEEeccEEEEe
Confidence 1 2356888887653
No 115
>PLN02634 probable pectinesterase
Probab=49.37 E-value=2.5e+02 Score=27.13 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=47.3
Q ss_pred ccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCce
Q 039868 158 QNIHILNSNIATG----------DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNG 226 (346)
Q Consensus 158 ~nv~I~n~~i~~g----------dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~g 226 (346)
.++..+|++|.|. ..++++....+...+.+|.|.+..+ +-... ..-.|+||++.++-.-
T Consensus 149 ~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~----------gR~yf~~CyIeG~VDF 218 (359)
T PLN02634 149 NYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA----------GRHYFKECYIEGSIDF 218 (359)
T ss_pred CCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC----------CCEEEEeeEEcccccE
Confidence 4556666666542 2467777667889999999876544 33211 2458899999886543
Q ss_pred EEEEEecCCCceEEeEEEEeeEEecC
Q 039868 227 LRIKTWQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 227 i~i~s~~~~~g~v~nI~~~ni~~~~~ 252 (346)
|. |. -...|+||++...
T Consensus 219 IF-----G~----g~a~Fe~C~I~s~ 235 (359)
T PLN02634 219 IF-----GN----GRSMYKDCELHSI 235 (359)
T ss_pred Ec-----CC----ceEEEeccEEEEe
Confidence 31 11 1235888888754
No 116
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=48.04 E-value=3.4e+02 Score=28.13 Aligned_cols=75 Identities=11% Similarity=0.191 Sum_probs=48.2
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
++...+|++|.| +..++++....+...+.||.|.+..+ +-..+ ..-.|+||++.++-.-|+ +.
T Consensus 347 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFIF-G~ 415 (572)
T PLN02990 347 DHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS----------HRQFFRDCTVSGTVDFIF-GD 415 (572)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC----------CcEEEEeeEEecccceEc-cC
Confidence 566777777765 24578877777888889998875544 33322 134788899988754331 11
Q ss_pred ecCCCceEEeEEEEeeEEec
Q 039868 232 WQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~ 251 (346)
-...|+||++..
T Consensus 416 --------a~avf~~C~i~~ 427 (572)
T PLN02990 416 --------AKVVLQNCNIVV 427 (572)
T ss_pred --------ceEEEEccEEEE
Confidence 135688888864
No 117
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=47.33 E-value=3.3e+02 Score=27.91 Aligned_cols=76 Identities=8% Similarity=0.123 Sum_probs=52.1
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.+++..+|+.|+|. +.++++....+...+.||.|.+..+ +-..+ ..-.++||+|.++-.-|+ +
T Consensus 312 ~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~----------~rq~y~~c~I~GtVDFIF-G 380 (538)
T PLN03043 312 GERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS----------LRQFYRECDIYGTVDFIF-G 380 (538)
T ss_pred CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC----------CcEEEEeeEEeeccceEe-e
Confidence 37788888888862 4678888778889999999976544 44332 134889999988754331 1
Q ss_pred EecCCCceEEeEEEEeeEEec
Q 039868 231 TWQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~ 251 (346)
. -...|+||++..
T Consensus 381 ~--------a~avfq~c~i~~ 393 (538)
T PLN03043 381 N--------AAAIFQNCNLYA 393 (538)
T ss_pred c--------ceeeeeccEEEE
Confidence 1 235688888864
No 118
>PLN02314 pectinesterase
Probab=46.54 E-value=1.8e+02 Score=30.17 Aligned_cols=133 Identities=10% Similarity=0.068 Sum_probs=74.2
Q ss_pred cccEEEEeeEEecC-----CceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIATG-----DDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~g-----dD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.++...+|+.|.|. ..++++..+.+...+.||.|.+.++ +-..+ ..-.++||++.++-.-|+
T Consensus 364 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~rq~y~~C~I~GtvDFIF-- 431 (586)
T PLN02314 364 GKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS----------NRQFYRDCDITGTIDFIF-- 431 (586)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC----------CCEEEEeeEEEeccceec--
Confidence 36667777777652 4577877777888888888875544 33322 124788888887654331
Q ss_pred EecCCCceEEeEEEEeeEEecCCc----cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCc--eEEEEccCCCC
Q 039868 231 TWQGGSGYARKITFNDITLTDVDN----PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD--AIALNCSRTVG 304 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~--~~~i~~~~~~~ 304 (346)
|. -...|+||.+..... .-.|... .+ .....-..+.|.|.+++..... ..+ -|.|=.+
T Consensus 432 ---G~----a~avf~~c~i~~~~~~~~~~~~iTA~--~r------~~~~~~~G~vf~~c~i~~~~~~~~~~y-LGRpW~~ 495 (586)
T PLN02314 432 ---GN----AAVVFQNCNIQPRQPLPNQFNTITAQ--GK------KDPNQNTGISIQRCTISAFGNLTAPTY-LGRPWKD 495 (586)
T ss_pred ---cC----ceeeeeccEEEEecCCCCCCceEecC--CC------CCCCCCCEEEEEeeEEecCCccccccc-ccCCCCC
Confidence 11 235688888864321 0122221 00 0111234678888888764321 222 3444444
Q ss_pred eecEEEEeEEEEe
Q 039868 305 CDNIVLEHIHIAS 317 (346)
Q Consensus 305 ~~ni~~~nv~v~~ 317 (346)
-..+.|-+-.+..
T Consensus 496 ysr~v~~~s~i~~ 508 (586)
T PLN02314 496 FSTTVIMQSYIGS 508 (586)
T ss_pred CceEEEEecccCC
Confidence 5566777766654
No 119
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=46.28 E-value=1.7e+02 Score=30.40 Aligned_cols=132 Identities=7% Similarity=0.024 Sum_probs=70.7
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
+++..+|+.|.| ++.++++....+...+.||.|.+..+ +-..+ ..-.++||++.++-.-|+ +.
T Consensus 362 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~----------~rq~y~~c~I~GtvDFIF-G~ 430 (587)
T PLN02313 362 ERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS----------NRQFFVKCHITGTVDFIF-GN 430 (587)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC----------CcEEEEeeEEeeccceec-cc
Confidence 566666777765 24577777777888888888865443 33322 123788888887654332 11
Q ss_pred ecCCCceEEeEEEEeeEEecCCc----cEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCc-----eE-EEEccC
Q 039868 232 WQGGSGYARKITFNDITLTDVDN----PIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD-----AI-ALNCSR 301 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~-----~~-~i~~~~ 301 (346)
-...|+||++..... .-.|...-+. ....-..+.|.|.+++..... .. ..-|.|
T Consensus 431 --------a~avfq~c~i~~r~~~~~~~~~iTAqgr~--------~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRP 494 (587)
T PLN02313 431 --------AAAVLQDCDINARRPNSGQKNMVTAQGRS--------DPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRP 494 (587)
T ss_pred --------eeEEEEccEEEEecCCCCCcceEEecCCC--------CCCCCceEEEEecEEecCCccccccccchhhccCC
Confidence 235688888864321 0122221000 111234678888887753321 00 123444
Q ss_pred CCCeecEEEEeEEEE
Q 039868 302 TVGCDNIVLEHIHIA 316 (346)
Q Consensus 302 ~~~~~ni~~~nv~v~ 316 (346)
=.+-..+.|-+-.+.
T Consensus 495 W~~ysr~v~~~s~i~ 509 (587)
T PLN02313 495 WKEYSRTVIMQSDIS 509 (587)
T ss_pred CCCCccEEEEecccC
Confidence 444555666665554
No 120
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=44.19 E-value=3.9e+02 Score=27.81 Aligned_cols=76 Identities=8% Similarity=0.096 Sum_probs=50.1
Q ss_pred cccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
.+++..+|+.|.| +..++++....+...+.||.|.+..+ +-..+ ..-.|+||++.++-.-| ++
T Consensus 371 ~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFI-FG 439 (596)
T PLN02745 371 GEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT----------HRQFYRSCVITGTIDFI-FG 439 (596)
T ss_pred cCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC----------CcEEEEeeEEEeeccEE-ec
Confidence 3677777777776 24578887778899999999875544 33211 23588999998875433 11
Q ss_pred EecCCCceEEeEEEEeeEEec
Q 039868 231 TWQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~ 251 (346)
. -...|+||++..
T Consensus 440 ~--------a~avf~~C~i~~ 452 (596)
T PLN02745 440 D--------AAAIFQNCLIFV 452 (596)
T ss_pred c--------eeEEEEecEEEE
Confidence 1 235688888864
No 121
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=42.54 E-value=1e+02 Score=24.74 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCEEEecCCCEEEee-e-eeecCCCCCCceEEEEeeEEEecCCCCCCCCCCCcccEEEEeeeceEEEeceEEe
Q 039868 48 NNPTLQVPQGKTFLLQ-P-TSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEID 119 (346)
Q Consensus 48 ~gg~V~iP~G~ty~i~-~-l~l~~~~~~s~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~id 119 (346)
.+..|+||+|++.++. + -.| -.|.++|+|.+.++.. +.+ .++.|.|+|.|.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~l--------~~l~I~G~L~f~~~~~----------~~L-~a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPKL--------GSLIIGGTLIFDDDRD----------ITL-RAEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCChhe--------eEEEEEEEEEEccCCC----------CEE-EEEEEEECCCCeEE
Confidence 4789999999655553 2 222 2344499999876521 222 24678888854443
No 122
>PLN02197 pectinesterase
Probab=38.54 E-value=1.6e+02 Score=30.49 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=47.5
Q ss_pred cccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEE
Q 039868 157 SQNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIK 230 (346)
Q Consensus 157 s~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~ 230 (346)
..+...+|++|.| ++.++++....+...+.+|.|.+..+ +-..+ ..-.|+||++.++-.-|+
T Consensus 363 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~----------~Rqyy~~C~I~GtVDFIF-- 430 (588)
T PLN02197 363 SEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN----------GRQFYRNIVVSGTVDFIF-- 430 (588)
T ss_pred CCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC----------CCEEEEeeEEEecccccc--
Confidence 3667777777765 34678887777888888888875544 33322 123788888887643321
Q ss_pred EecCCCceEEeEEEEeeEEec
Q 039868 231 TWQGGSGYARKITFNDITLTD 251 (346)
Q Consensus 231 s~~~~~g~v~nI~~~ni~~~~ 251 (346)
|. ....|+||++..
T Consensus 431 ---G~----a~avfq~C~i~~ 444 (588)
T PLN02197 431 ---GK----SATVIQNSLIVV 444 (588)
T ss_pred ---cc----eeeeeecCEEEE
Confidence 11 125688887753
No 123
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=32.82 E-value=5.5e+02 Score=26.17 Aligned_cols=76 Identities=5% Similarity=0.033 Sum_probs=49.7
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCce-eEEecccCCCCCCCEeEEEEEeeEEeCCCceEEEEE
Q 039868 158 QNIHILNSNIAT-----GDDCIAINTGSSQINVTGLTCGPGHG-ISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKT 231 (346)
Q Consensus 158 ~nv~I~n~~i~~-----gdD~i~i~~gs~nv~I~n~~~~~~~g-i~igs~~~~~~~~~~~ni~v~n~~~~~~~~gi~i~s 231 (346)
.+...+|++|+| ...++++...++...+.+|.|.+..+ +-..+ ..-.++||++.++-.-|+ +.
T Consensus 284 ~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~----------~RqyyrdC~I~GtVDFIF-G~ 352 (509)
T PLN02488 284 DGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR----------DRQFYRECFITGTVDFIC-GN 352 (509)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC----------CCEEEEeeEEeeccceEe-cc
Confidence 556666666665 24678888878889999998876544 33322 134888899988754332 11
Q ss_pred ecCCCceEEeEEEEeeEEecC
Q 039868 232 WQGGSGYARKITFNDITLTDV 252 (346)
Q Consensus 232 ~~~~~g~v~nI~~~ni~~~~~ 252 (346)
-...|+||++...
T Consensus 353 --------a~avFq~C~I~sr 365 (509)
T PLN02488 353 --------AAAVFQFCQIVAR 365 (509)
T ss_pred --------eEEEEEccEEEEe
Confidence 2456888888753
No 124
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.37 E-value=42 Score=30.17 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=28.8
Q ss_pred cEEEeeccccCCCCcchH------------HHHHHHHHHhcCCCCCCCEEEe--cCCCEEEe
Q 039868 15 PYNVMNFGAVGNGVTDDS------------QAFIKAWNAVCGDTSNNPTLQV--PQGKTFLL 62 (346)
Q Consensus 15 ~~nV~dfGA~gdg~tddT------------~Aiq~Ai~~a~~~~~~gg~V~i--P~G~ty~i 62 (346)
.+|++||...--...||+ +-|-+||+++++ .. ...|++ |.|+.|.-
T Consensus 35 ~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~-~~-~~~vi~lsP~G~~f~Q 94 (240)
T COG0336 35 VVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKA-AK-KAKVILLSPQGKPFTQ 94 (240)
T ss_pred eecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHh-cc-CCeEEEECCCCCccCH
Confidence 556667766555555664 568999966554 32 445555 78966654
No 125
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=24.58 E-value=5.6e+02 Score=23.63 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=37.3
Q ss_pred eceEEEeceEEeCCCc--ccccccCCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEE--ecCCceEEeCCC----
Q 039868 108 NGFTVNGNGEIDGQGS--QWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNI--ATGDDCIAINTG---- 179 (346)
Q Consensus 108 ~ni~I~G~G~idg~g~--~~~~~~~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i--~~gdD~i~i~~g---- 179 (346)
.+++|.|.|+|.-.+. .-... +.+++|.+=+|.-. ...|||+-. +.|+|.+=.+ ..++|+|-....
T Consensus 97 ~dLti~G~GtL~V~g~~~~GI~s-~d~L~I~~Gti~V~---a~~dGi~g~--d~v~I~gGti~i~a~~DGI~s~n~~d~~ 170 (264)
T PF14262_consen 97 GDLTINGSGTLTVTGNYKHGIHS-KDDLVITGGTITVT---AADDGIKGK--DSVTINGGTITITAGGDGIKSDNDEDES 170 (264)
T ss_pred CCEEEcceEEEEEEecccCcEEe-CCeEEEEecEEEEE---Ecccceecc--eEEEEeCCEEEEEeCCCcccccCccccc
Confidence 5677777776653332 11111 15666665444431 134555433 4566666544 346666543310
Q ss_pred ceeEEEEeeEE
Q 039868 180 SSQINVTGLTC 190 (346)
Q Consensus 180 s~nv~I~n~~~ 190 (346)
.-+|+|..=++
T Consensus 171 ~G~v~I~GGti 181 (264)
T PF14262_consen 171 KGYVTINGGTI 181 (264)
T ss_pred eeEEEEeCCEE
Confidence 13555555443
No 126
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=20.53 E-value=50 Score=31.30 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=37.2
Q ss_pred ccccCccCCCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeec
Q 039868 2 ATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQ 68 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~ 68 (346)
..|||+|+.-++.+-++- ||..+++ +.-+|+-+ ..|+ -|.+.|++- .+++.++.++
T Consensus 10 s~CG~~~~~t~~~vr~~~-~~~~~~~----~~~l~~y~-~~CS----yGk~~l~~~-n~~V~~V~vP 65 (314)
T PF05548_consen 10 SFCGYPPSLTAEQVRSLF-FGPNGDG----TGGLANYY-NTCS----YGKLRLNPE-NFRVVDVDVP 65 (314)
T ss_pred cccCCCCCCCHHHHHHHH-hCCCCCC----CccHHHHH-hhCC----CCceecccc-ceEEEEeecc
Confidence 469997776655444443 7755554 45699999 6897 456667666 7777666665
Done!