BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039871
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/260 (51%), Positives = 174/260 (66%), Gaps = 6/260 (2%)
Query: 89 DKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGCSS 148
D+I LPGQP + F+ Y+GY+TVD AGR+LFY E+PE++ PLVLWLNGGPGCSS
Sbjct: 9 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 149 FGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAGDN 208
GA ELG FRV G L NEY WN VANV+FL+SPAGVGFSY+NT+SD +GDN
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 209 STAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINLKG 268
TA DSY FL W ERFP YK RDF+I GESYAGHYVP+L+ + + +INLKG
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 183
Query: 269 VAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-ENSTEQCDKFLSQSSD 327
+GNG+++D D G +F+W+H ++SD++Y+ + C S + + CD ++
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 243
Query: 328 EIGDIFGYNIYAPFCNGTGT 347
E G+I Y++Y P CN T +
Sbjct: 244 EQGNIDMYSLYTPVCNITSS 263
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 172/256 (67%), Gaps = 6/256 (2%)
Query: 89 DKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGCSS 148
D+I LPGQP + F+ Y+GY+TVD AGR+LFY E+PE++ PLVLWLNGGPGCSS
Sbjct: 4 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 149 FGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAGDN 208
GA ELG FRV G L NEY WN VANV+FL+SPAGVGFSY+NT+SD +GDN
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 209 STAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINLKG 268
TA DSY FL W ERFP YK RDF+I GESYAGHYVP+L+ + + +INLKG
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 178
Query: 269 VAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-ENSTEQCDKFLSQSSD 327
+GNG+++D D G +F+W+H ++SD++Y+ + C S + + CD ++
Sbjct: 179 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 238
Query: 328 EIGDIFGYNIYAPFCN 343
E G+I Y++Y P CN
Sbjct: 239 EQGNIDMYSLYTPVCN 254
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 172/256 (67%), Gaps = 6/256 (2%)
Query: 89 DKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGCSS 148
D+I LPGQP + F+ Y+GY+TVD AGR+LFY E+PE++ PLVLWLNGGPGCSS
Sbjct: 5 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 149 FGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAGDN 208
GA ELG FRV G L NEY WN VANV+FL+SPAGVGFSY+NT+SD +GDN
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 209 STAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINLKG 268
TA DSY FL W ERFP YK RDF+I GESYAGHYVP+L+ + + +INLKG
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 179
Query: 269 VAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-ENSTEQCDKFLSQSSD 327
+GNG+++D D G +F+W+H ++SD++Y+ + C S + + CD ++
Sbjct: 180 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 239
Query: 328 EIGDIFGYNIYAPFCN 343
E G+I Y++Y P CN
Sbjct: 240 EQGNIDMYSLYTPVCN 255
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 172/256 (67%), Gaps = 6/256 (2%)
Query: 89 DKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGCSS 148
D+I LPGQP + F+ Y+GY+TVD AGR+LFY E+PE++ PLVLWLNGGPGCSS
Sbjct: 9 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 149 FGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAGDN 208
GA ELG FRV G L NEY WN VANV+FL+SPAGVGFSY+NT+SD +GDN
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 209 STAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINLKG 268
TA DSY FL W ERFP YK RDF+I GESYAGHYVP+L+ + + +INLKG
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 183
Query: 269 VAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-ENSTEQCDKFLSQSSD 327
+GNG+++D D G +F+W+H ++SD++Y+ + C S + + CD ++
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 243
Query: 328 EIGDIFGYNIYAPFCN 343
E G+I Y++Y P CN
Sbjct: 244 EQGNIDMYSLYTPVCN 259
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 248 bits (632), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 168/264 (63%), Gaps = 7/264 (2%)
Query: 82 QTGSMEQDKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNP-LVLWL 140
Q E D+I LPGQPNG+ F Y GYVT+D GRAL+Y+F E+ LVLWL
Sbjct: 1 QLQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWL 60
Query: 141 NGGPGCSSFGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTS 200
NGGPGCSS G GAM ELG FRV+++G++L NEYAWN AN++F ESPAGVGFSYSNT+S
Sbjct: 61 NGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 201 DYDHAGDNSTAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVAN 260
D GD+ A D+YTFLV W ERFP Y R+F+I GES GH++PQL+ + + N
Sbjct: 121 DLS-MGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRN--N 175
Query: 261 QTIINLKGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-ENSTEQCD 319
IN +G+ + +G+ ND D G + +W H LISDE+ C TS + T +C
Sbjct: 176 SPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECT 235
Query: 320 KFLSQSSDEIGDIFGYNIYAPFCN 343
+ +++ E G+I Y IY P C+
Sbjct: 236 EVWNKALAEQGNINPYTIYTPTCD 259
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 226/456 (49%), Gaps = 59/456 (12%)
Query: 87 EQDKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGC 146
+QD+I LPG F QY+GY+ + + L Y+FVES ++ +P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 147 SSFGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAG 206
SS +G +TE GPF V DG TL N Y+WN +ANV++LESPAGVGFSYS+ +
Sbjct: 61 SSL-DGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 117
Query: 207 DNSTAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINL 266
D A ++ L ++ FP+YKN F+TGESYAG Y+P LA ++ +NL
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNL 171
Query: 267 KGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-----ENSTEQCDKF 321
+G+A+GNG+ + ++ V F + H L+ + + + T+C + +N +C
Sbjct: 172 QGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTN 231
Query: 322 LSQSSDEIGD--IFGYNIYAPFCNGTGTQ-------------GN---------------- 350
L + + +G+ + YN+YAP G + GN
Sbjct: 232 LQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALL 291
Query: 351 PSGSVNEFD-PCSRDY-VNTYLNSPQVQTALHV--NPTKWSSCSAIGWTDSPPTVLPL-- 404
SG D PC+ +TYLN+P V+ AL++ +W C+ + +
Sbjct: 292 RSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNS 351
Query: 405 --IKDLMANGIRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYI----NANXXXX 458
+K L + ++ +Y+GD+D + + SLN ++ PW + +
Sbjct: 352 QYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAG 411
Query: 459 XXXXXXXLTFVTVRGAGHFVPSYQPKRALVMIASFL 494
+ F+T++GAGH VP+ +P A M + FL
Sbjct: 412 FVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 447
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 153/266 (57%), Gaps = 18/266 (6%)
Query: 87 EQDKINALPGQPNGIGFNQYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGC 146
+QD+I LPG F QY+GY+ + L Y+FVES ++ +P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 147 SSFGNGAMTELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAG 206
SS +G +TE GPF V DG TL N Y+WN +ANV++LESPAGVGFSYS+ +
Sbjct: 63 SSL-DGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 119
Query: 207 DNSTAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINL 266
D A ++ L ++ FP+YKN F+TGESYAG Y+P LA ++ +NL
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ------DPSMNL 173
Query: 267 KGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTS-----ENSTEQCDKF 321
+G+A+GNG+ + ++ V F + H L+ + + + T+C + +N +C
Sbjct: 174 QGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTN 233
Query: 322 LSQSSDEIGD--IFGYNIYAPFCNGT 345
L + + +G+ + YN+YAP G
Sbjct: 234 LQEVARIVGNSGLNIYNLYAPCAGGV 259
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 193/434 (44%), Gaps = 70/434 (16%)
Query: 105 QYAGYVTV-----DAQAGRALFYYFVESPENSST----NPLVLWLNGGPGCSSFGNGAMT 155
+AG++ + D Q L Y+F + N S PL++WLNGGPGCSS +GA+
Sbjct: 29 MHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSM-DGALV 87
Query: 156 ELGPFRVNSDGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSD-------YDHAGDN 208
E GPFRVNSDGK L+ NE +W + +++F++ P G GFS + +D ++
Sbjct: 88 ESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLED 146
Query: 209 STAADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVA--NQTIINL 266
T FL N+ + FP+ R ++GESYAG Y+P A+ I++HNK + + +L
Sbjct: 147 VTKH-FMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205
Query: 267 KGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTSENSTEQCDKFLSQSS 326
K + IGNG ++ T + F LI + + H N+ E C ++ +S
Sbjct: 206 KALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHL------TNAHENCQNLINSAS 259
Query: 327 DEIGDIFGY-------NIYAPFCNGTGTQGN---------------PSGSVNEFDPCSRD 364
+ F Y N+ + + +G PS +N P
Sbjct: 260 TDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNW--PKDIS 317
Query: 365 YVNTYLNSPQVQTALHVNPTK---WSSCS-AIGWTDSPPTVLP---LIKDLMANGIRVWI 417
+V+ + ++P V +LH++ K W C+ ++G S P P L+ L+ +GI + +
Sbjct: 318 FVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVL 377
Query: 418 YSGDIDGVVPITSTRYSISSLN------LPIKTPWYPWYINANXXXXXXXXX------XX 465
++GD D + +I +L + W +
Sbjct: 378 FNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRN 437
Query: 466 LTFVTVRGAGHFVP 479
LTFV+V A H VP
Sbjct: 438 LTFVSVYNASHMVP 451
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 95/154 (61%), Gaps = 9/154 (5%)
Query: 358 FDPCSRDYVNTYLNSPQVQTALHVNPT-----KWSSCSAI---GWTDSPPTVLPLIKDLM 409
+DPC+ Y Y N VQ ALH N T W++CS W D+P ++LP+ ++L+
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 410 ANGIRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYINANXXXXXXXXXXXLTFV 469
A G+R+W++SGD D VVP+T+TRYSI +L LP T WYPWY + LT V
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY-DDQEVGGWSQVYKGLTLV 122
Query: 470 TVRGAGHFVPSYQPKRALVMIASFLQGILPPSES 503
+VRGAGH VP ++P++ALV+ FLQG P ++
Sbjct: 123 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQT 156
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 9/153 (5%)
Query: 358 FDPCSRDYVNTYLNSPQVQTALHVNPT-----KWSSCSAI---GWTDSPPTVLPLIKDLM 409
+DPC+ Y Y N VQ ALH N T W++CS W D+P ++LP+ ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 410 ANGIRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYINANXXXXXXXXXXXLTFV 469
A G+R+W++SGD D VVP+T+TRYSI +L LP T WYPWY + LT V
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY-DDQEVGGWSQVYKGLTLV 120
Query: 470 TVRGAGHFVPSYQPKRALVMIASFLQGILPPSE 502
+VRGAGH VP ++P++ALV+ FLQG P +
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 92/147 (62%), Gaps = 9/147 (6%)
Query: 358 FDPCSRDYVNTYLNSPQVQTALHVNPT-----KWSSCSAI---GWTDSPPTVLPLIKDLM 409
+DPC+ Y Y N VQ ALH N T W++CS W D+P ++LP+ ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 410 ANGIRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYINANXXXXXXXXXXXLTFV 469
A G+R+W++SGD D VVP+T+TRYSI +L LP T WYPWY + LT V
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY-DDQEVGGWSQVYKGLTLV 120
Query: 470 TVRGAGHFVPSYQPKRALVMIASFLQG 496
+VRGAGH VP ++P++ALV+ FLQG
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQG 147
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 92/147 (62%), Gaps = 9/147 (6%)
Query: 358 FDPCSRDYVNTYLNSPQVQTALHVNPT-----KWSSCSAI---GWTDSPPTVLPLIKDLM 409
+DPC+ Y Y N VQ ALH N T W++CS W D+P ++LP+ ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 410 ANGIRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYINANXXXXXXXXXXXLTFV 469
A G+R+W++SGD D VVP+T+TRYSI +L LP T WYPWY + LT V
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWY-DDQEVGGWSQVYKGLTLV 120
Query: 470 TVRGAGHFVPSYQPKRALVMIASFLQG 496
+VRGAGH VP ++P++ALV+ FLQG
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQG 147
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 184/423 (43%), Gaps = 52/423 (12%)
Query: 105 QYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGCSSFGNGAMTELGPFRVNS 164
QY GY+ V+ + + F++ ES + + +P++LWLNGGPGCSS G ELGP +
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSL-TGLFFELGPSSIGP 73
Query: 165 DGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAGDNSTAA--DSYTFLVNWL 222
D K + N Y+WN+ A VIFL+ P VGFSYS ++ N+ AA D Y FL +
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS-----GVSNTVAAGKDVYNFLELFF 127
Query: 223 ERFPQYKNR--DFFITGESYAGHYVPQLADTIVSHNKVANQTIINLKGVAIGNGVLNDPT 280
++FP+Y N+ DF I GESYAGHY+P A I+SH NL V IGNG L DP
Sbjct: 128 DQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNG-LTDPL 182
Query: 281 DEWGAVDFYWSHALISDESYKGIHTYCDFTSENSTEQCDKFLSQSSDEIGDIFGYNIYAP 340
++ ++Y A + + E+S E+C + D ++
Sbjct: 183 TQY---NYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDS-QSVWSCVPATI 238
Query: 341 FCNGTGTQGNPSGSVNEFD------------PCSRDYVNTYLNSPQVQTALHVNPTKWSS 388
+CN N +D P +D ++ YLN V+ A+ + S
Sbjct: 239 YCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQD-IDDYLNQDYVKEAVGAEVDHYES 297
Query: 389 CS---------AIGWTDSPPTVLPLIKDLMANGIRVWIYSGDIDGVVPITSTRYSISSLN 439
C+ A W T + DL+ + + +Y+GD D + + L
Sbjct: 298 CNFDINRNFLFAGDWMKPYHTA---VTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLP 354
Query: 440 LPIKTPWYPWYIN------ANXXXXXXXXXXXLTFVTVRGAGHFVPSYQPKRALVMIASF 493
+ + + T++ V GH VP P+ AL M+ +
Sbjct: 355 WKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEW 414
Query: 494 LQG 496
+ G
Sbjct: 415 IHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 119/423 (28%), Positives = 182/423 (43%), Gaps = 52/423 (12%)
Query: 105 QYAGYVTVDAQAGRALFYYFVESPENSSTNPLVLWLNGGPGCSSFGNGAMTELGPFRVNS 164
QY GY+ V+ + + F++ ES + + +P++LWLNGGPGCSS G LGP +
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSL-TGLFFALGPSSIGP 73
Query: 165 DGKTLFQNEYAWNNVANVIFLESPAGVGFSYSNTTSDYDHAGDNSTAA--DSYTFLVNWL 222
D K + N Y+WN+ A VIFL+ P VGFSYS ++ N+ AA D Y FL +
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS-----GVSNTVAAGKDVYNFLELFF 127
Query: 223 ERFPQYKNR--DFFITGESYAGHYVPQLADTIVSHNKVANQTIINLKGVAIGNGVLNDPT 280
++FP+Y N+ DF I G SYAGHY+P A I+SH NL V IGNG L DP
Sbjct: 128 DQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSH----KDRNFNLTSVLIGNG-LTDPL 182
Query: 281 DEWGAVDFYWSHALISDESYKGIHTYCDFTSENSTEQCDKFLSQSSDEIGDIFGYNIYAP 340
++ ++Y A + + E+S E+C + D ++
Sbjct: 183 TQY---NYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDS-QSVWSCVPATI 238
Query: 341 FCNGTGTQGNPSGSVNEFD------------PCSRDYVNTYLNSPQVQTALHVNPTKWSS 388
+CN N +D P +D ++ YLN V+ A+ + S
Sbjct: 239 YCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQD-IDDYLNQDYVKEAVGAEVDHYES 297
Query: 389 CS---------AIGWTDSPPTVLPLIKDLMANGIRVWIYSGDIDGVVPITSTRYSISSLN 439
C+ A W T + DL+ + + +Y+GD D + + L
Sbjct: 298 CNFDINRNFLFAGDWMKPYHTA---VTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLP 354
Query: 440 LPIKTPWYPWYIN------ANXXXXXXXXXXXLTFVTVRGAGHFVPSYQPKRALVMIASF 493
+ + + T++ V GH VP P+ AL M+ +
Sbjct: 355 WKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEW 414
Query: 494 LQG 496
+ G
Sbjct: 415 IHG 417
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 10/155 (6%)
Query: 358 FDPCSRDYVNTYLNSPQVQTALHVNPT-----KWSSCSAI---GWTDSPPTVLPLIKDLM 409
+DPC+ YLN P+VQTALH N + W+ CS W + +LP+ ++L+
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 410 ANGIRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYINANXXXXX--XXXXXXLT 467
G+RVW+YSGD D VVP++STR S+++L LP+KT WYPWY+ LT
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 468 FVTVRGAGHFVPSYQPKRALVMIASFLQGILPPSE 502
+VTVRGAGH VP ++P +A ++ FL+G P+E
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPAE 158
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 360 PCSRDYV-NTYLNSPQVQTALHV--NPTKWSSCSAIGWTDSPPTVLPL----IKDLMANG 412
PC+ +TYLN+P V+ AL++ +W C+ + + +K L +
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQK 63
Query: 413 IRVWIYSGDIDGVVPITSTRYSISSLNLPIKTPWYPWYI----NANXXXXXXXXXXXLTF 468
++ +Y+GD+D + + SLN ++ PW + + + F
Sbjct: 64 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAF 123
Query: 469 VTVRGAGHFVPSYQPKRALVMIASFL 494
+T++GAGH VP+ +P A M + FL
Sbjct: 124 LTIKGAGHMVPTDKPLAAFTMFSRFL 149
>pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase
pdb|1MRO|D Chain D, Methyl-Coenzyme M Reductase
Length = 548
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 45 SRSKNSPAALPRSFKKIINFNARKEYSPAVRSSIYQPQTGSMEQDKINALPGQPNGIGFN 104
+R +N P +P + I ++R Y VR S+ TG+M D+I G+GF
Sbjct: 271 ARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFT 330
Query: 105 QYA 107
QYA
Sbjct: 331 QYA 333
>pdb|1HBM|A Chain A, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|D Chain D, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase
pdb|1HBN|D Chain D, Methyl-Coenzyme M Reductase
pdb|1HBO|A Chain A, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|D Chain D, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBU|A Chain A, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|D Chain D, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|3M1V|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M1V|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
Length = 549
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 45 SRSKNSPAALPRSFKKIINFNARKEYSPAVRSSIYQPQTGSMEQDKINALPGQPNGIGFN 104
+R +N P +P + I ++R Y VR S+ TG+M D+I G+GF
Sbjct: 271 ARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFT 330
Query: 105 QYA 107
QYA
Sbjct: 331 QYA 333
>pdb|3POT|A Chain A, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
pdb|3POT|D Chain D, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
Length = 550
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 45 SRSKNSPAALPRSFKKIINFNARKEYSPAVRSSIYQPQTGSMEQDKINALPGQPNGIGFN 104
+R +N P +P + I ++R Y VR S+ TG+M D+I G+GF
Sbjct: 272 ARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFT 331
Query: 105 QYA 107
QYA
Sbjct: 332 QYA 334
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 31/138 (22%)
Query: 208 NST-AADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINL 266
NST + D T L +++ R P+++ ++ITGES D + K N ++
Sbjct: 446 NSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDAL----KAKNFEVL-- 499
Query: 267 KGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTSENSTEQCDKFLSQSS 326
L DP DE+ A + ++G T D T + E+ D+ ++
Sbjct: 500 --------FLTDPIDEY---------AFTQLKEFEG-KTLVDITKDFELEETDEEKAERE 541
Query: 327 DEIGDIFGYNIYAPFCNG 344
EI + Y P
Sbjct: 542 KEIKE------YEPLTKA 553
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 31/138 (22%)
Query: 208 NST-AADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINL 266
NST + D T L +++ R P+++ ++ITGES D + K N ++
Sbjct: 174 NSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDAL----KAKNFEVL-- 227
Query: 267 KGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTSENSTEQCDKFLSQSS 326
L DP DE+ A + ++G T D T + E+ D+ ++
Sbjct: 228 --------FLTDPIDEY---------AFTQLKEFEG-KTLVDITKDFELEETDEEKAERE 269
Query: 327 DEIGDIFGYNIYAPFCNG 344
EI + Y P
Sbjct: 270 KEIKE------YEPLTKA 281
>pdb|1HK7|A Chain A, Middle Domain Of Hsp90
pdb|1HK7|B Chain B, Middle Domain Of Hsp90
Length = 288
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 25/125 (20%)
Query: 208 NST-AADSYTFLVNWLERFPQYKNRDFFITGESYAGHYVPQLADTIVSHNKVANQTIINL 266
NST + D T L +++ R P+++ ++ITGES D + K N ++
Sbjct: 174 NSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDAL----KAKNFEVL-- 227
Query: 267 KGVAIGNGVLNDPTDEWGAVDFYWSHALISDESYKGIHTYCDFTSENSTEQCDKFLSQSS 326
L DP DE+ A + ++G T D T + E+ D+ ++
Sbjct: 228 --------FLTDPIDEY---------AFTQLKEFEG-KTLVDITKDFELEETDEEKAERE 269
Query: 327 DEIGD 331
EI +
Sbjct: 270 KEIKE 274
>pdb|3SQG|A Chain A, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|D Chain D, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|G Chain G, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 579
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 43 SRSRSKNSPAALPRSFKKIINFNARKEYSPA------VRSSIYQPQTGSMEQDKINALPG 96
R+RS N P +P + NA SPA +R+ + +M D++
Sbjct: 284 KRARSHNEPGGMP------LGINADSTRSPALFPNDPIRAELESIAVAAMVYDQLXFGTY 337
Query: 97 QPNGIGFNQYAGYVTVD 113
G+GF QYA D
Sbjct: 338 MSGGVGFTQYASATYTD 354
>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
Rsmh From E.Coli
Length = 347
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 30 HQLADNAIKRLIKSRSRSKNSPAALPRSFKKIINFNARK 68
H L D +KR ++ SR PA LP + +++ R+
Sbjct: 276 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 314
>pdb|1E6V|A Chain A, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|D Chain D, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 553
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%)
Query: 24 FSEANDHQLADNAIKRLIKSRSRSKNSPAALPRSFKKIINFNARKEYSPAVRSSIYQPQT 83
F+ A+ H N + L R+R +N P +P RK + ++
Sbjct: 254 FAFASKHAEVINMGEMLPARRARGENEPGGVPFGVLADCVQTMRKYPDDPAKVALEVIAA 313
Query: 84 GSMEQDKINALPGQPNGIGFNQYAGYVTVD 113
G+M D+I G+GF QYA V D
Sbjct: 314 GAMLYDQIWLGSYMSGGVGFTQYATAVYPD 343
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 60 KIINFNARKEYSPAVRSSIYQPQTGSMEQDK------INALPGQPNGIGFNQYAGYVTVD 113
++I F +E P R I P +ME D I + GQ + I + ++ G V +
Sbjct: 191 RVIEFITLEENKPT-RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 249
Query: 114 AQAGRALFYYFVESPENSSTNPLVLWLN 141
YY VE+P N + L+ LN
Sbjct: 250 DDPVLGEDYYSVENPANKRRSTLITVLN 277
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 60 KIINFNARKEYSPAVRSSIYQPQTGSMEQDK------INALPGQPNGIGFNQYAGYVTVD 113
++I F +E P R I P +ME D I + GQ + I + ++ G V +
Sbjct: 194 RVIEFITLEENKPT-RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 114 AQAGRALFYYFVESPENSSTNPLVLWLN 141
YY VE+P N + L+ LN
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLN 280
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 60 KIINFNARKEYSPAVRSSIYQPQTGSMEQDK------INALPGQPNGIGFNQYAGYVTVD 113
++I F +E P R I P +ME D I + GQ + I + ++ G V +
Sbjct: 194 RVIEFITLEENKPT-RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 114 AQAGRALFYYFVESPENSSTNPLVLWLN 141
YY VE+P N + L+ LN
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLN 280
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 60 KIINFNARKEYSPAVRSSIYQPQTGSMEQDK------INALPGQPNGIGFNQYAGYVTVD 113
++I F +E P R I P +ME D I + GQ + I + ++ G V +
Sbjct: 196 RVIEFITLEENKPT-RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 254
Query: 114 AQAGRALFYYFVESPENSSTNPLVLWLN 141
YY VE+P N + L+ LN
Sbjct: 255 DDPVLGEDYYSVENPANKRRSTLITVLN 282
>pdb|2QQH|A Chain A, Structure Of C8a-Macpf Reveals Mechanism Of Membrane
Attack In Complement Immune Defense
Length = 334
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 309 FTSENSTEQCDKFLSQSSDEIGDIFGYNIYAPFCNGTGTQGNPSGSV 355
F D+ + QS E+ D + Y +YA F N GT SGS+
Sbjct: 171 FKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSM 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,567,831
Number of Sequences: 62578
Number of extensions: 709855
Number of successful extensions: 1585
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 44
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)