Query 039873
Match_columns 709
No_of_seqs 853 out of 4814
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-135 8E-140 1173.1 77.9 691 9-707 167-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-126 7E-131 1072.7 69.6 614 96-709 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.1E-87 8.8E-92 772.8 58.9 668 12-704 69-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-68 2.7E-73 605.9 60.4 502 66-575 368-915 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1E-68 2.3E-73 605.0 50.5 456 10-472 103-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1.2E-65 2.6E-70 581.6 57.6 504 27-536 367-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-30 3.2E-35 307.7 59.9 543 9-569 310-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-29 2.7E-34 299.8 60.8 543 8-569 275-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 8.6E-33 1.9E-37 229.9 7.9 106 576-699 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.1E-20 2.3E-25 224.8 58.9 513 37-568 119-739 (1157)
11 PRK11447 cellulose synthase su 99.9 7.5E-21 1.6E-25 226.1 55.6 520 33-568 31-665 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 6.4E-18 1.4E-22 192.1 57.6 533 11-569 61-706 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.6E-19 5.7E-24 180.2 37.3 449 103-565 52-515 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 3.7E-19 8E-24 179.2 30.1 417 140-569 53-485 (966)
15 PRK09782 bacteriophage N4 rece 99.8 2.9E-16 6.3E-21 178.7 52.2 516 29-571 180-742 (987)
16 PRK11788 tetratricopeptide rep 99.8 3E-18 6.4E-23 181.8 28.8 306 107-454 43-363 (389)
17 PRK11788 tetratricopeptide rep 99.8 5.1E-18 1.1E-22 180.0 30.0 288 282-576 46-354 (389)
18 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-16 3.5E-21 177.6 42.5 249 315-568 307-570 (615)
19 PRK10049 pgaA outer membrane p 99.8 8.8E-15 1.9E-19 166.7 46.7 389 144-540 24-461 (765)
20 PRK15174 Vi polysaccharide exp 99.8 2E-15 4.4E-20 168.2 40.5 350 182-540 17-386 (656)
21 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-15 1.1E-19 165.8 43.1 437 102-568 130-596 (615)
22 PRK10049 pgaA outer membrane p 99.8 5.5E-15 1.2E-19 168.4 41.7 392 169-569 14-456 (765)
23 KOG2002 TPR-containing nuclear 99.8 3.2E-14 7E-19 151.7 43.5 548 7-569 143-745 (1018)
24 PRK15174 Vi polysaccharide exp 99.7 1.5E-14 3.2E-19 161.3 39.9 345 79-431 16-380 (656)
25 PRK14574 hmsH outer membrane p 99.7 1.6E-13 3.5E-18 153.3 46.0 435 77-542 43-520 (822)
26 PRK14574 hmsH outer membrane p 99.7 3.5E-13 7.7E-18 150.6 44.7 431 109-569 44-513 (822)
27 KOG2002 TPR-containing nuclear 99.7 6.8E-13 1.5E-17 141.7 43.6 548 10-571 180-800 (1018)
28 KOG4422 Uncharacterized conser 99.7 1.4E-12 3.1E-17 126.8 36.6 417 99-535 116-590 (625)
29 KOG4422 Uncharacterized conser 99.7 1E-11 2.2E-16 121.0 40.5 420 31-500 117-587 (625)
30 KOG0495 HAT repeat protein [RN 99.6 2.4E-10 5.1E-15 117.2 44.6 461 107-582 414-891 (913)
31 KOG2003 TPR repeat-containing 99.6 2.9E-12 6.4E-17 125.2 27.1 503 28-555 160-709 (840)
32 KOG0495 HAT repeat protein [RN 99.5 2.2E-09 4.8E-14 110.3 46.3 490 36-546 382-891 (913)
33 KOG2076 RNA polymerase III tra 99.5 8.1E-10 1.7E-14 118.0 44.6 346 40-393 149-547 (895)
34 KOG4318 Bicoid mRNA stability 99.5 1.2E-10 2.7E-15 123.3 36.1 527 17-573 12-598 (1088)
35 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3E-18 138.3 10.9 255 309-568 15-276 (280)
36 PRK10747 putative protoheme IX 99.4 1.5E-10 3.3E-15 121.7 29.2 285 214-535 97-390 (398)
37 KOG2076 RNA polymerase III tra 99.4 5.2E-10 1.1E-14 119.4 31.7 350 214-579 152-522 (895)
38 KOG1915 Cell cycle control pro 99.4 2.1E-08 4.5E-13 99.6 39.5 478 80-568 85-624 (677)
39 KOG0547 Translocase of outer m 99.4 6.7E-10 1.4E-14 110.5 28.2 404 102-568 118-565 (606)
40 TIGR00540 hemY_coli hemY prote 99.4 1.1E-09 2.4E-14 115.9 32.5 290 213-534 96-398 (409)
41 KOG1126 DNA-binding cell divis 99.4 1E-10 2.2E-15 121.0 23.0 162 372-569 455-620 (638)
42 KOG2003 TPR repeat-containing 99.4 3.5E-10 7.5E-15 111.0 24.8 414 150-569 216-689 (840)
43 PRK10747 putative protoheme IX 99.4 4.4E-10 9.5E-15 118.3 27.8 275 284-568 97-389 (398)
44 PF13429 TPR_15: Tetratricopep 99.4 3.7E-12 8.1E-17 127.9 11.7 253 208-464 15-274 (280)
45 TIGR00540 hemY_coli hemY prote 99.3 6.8E-10 1.5E-14 117.5 28.4 281 181-499 95-395 (409)
46 KOG1155 Anaphase-promoting com 99.3 2E-09 4.4E-14 106.5 29.0 191 372-567 330-534 (559)
47 KOG1126 DNA-binding cell divis 99.3 8.8E-11 1.9E-15 121.5 20.4 243 317-568 334-585 (638)
48 KOG1915 Cell cycle control pro 99.3 1E-08 2.2E-13 101.7 33.1 379 184-571 87-502 (677)
49 KOG4318 Bicoid mRNA stability 99.3 9.5E-10 2.1E-14 116.7 26.1 443 96-568 22-556 (1088)
50 KOG1173 Anaphase-promoting com 99.3 2.2E-08 4.7E-13 101.9 34.6 260 303-568 245-517 (611)
51 COG2956 Predicted N-acetylgluc 99.3 3.8E-09 8.2E-14 100.0 26.8 285 214-534 48-346 (389)
52 KOG1155 Anaphase-promoting com 99.3 5.9E-08 1.3E-12 96.4 36.0 246 244-498 235-490 (559)
53 COG3071 HemY Uncharacterized e 99.3 1.2E-08 2.7E-13 99.6 30.8 293 207-534 88-389 (400)
54 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.3E-16 87.4 6.8 50 401-450 1-50 (50)
55 TIGR02521 type_IV_pilW type IV 99.2 1.8E-09 3.9E-14 105.3 22.9 198 370-568 29-231 (234)
56 PF13041 PPR_2: PPR repeat fam 99.2 1.7E-11 3.8E-16 86.3 5.8 50 199-248 1-50 (50)
57 KOG2047 mRNA splicing factor [ 99.2 1.5E-06 3.2E-11 89.9 42.8 486 30-524 102-712 (835)
58 KOG2047 mRNA splicing factor [ 99.2 5.6E-06 1.2E-10 85.8 45.1 488 67-567 101-685 (835)
59 COG2956 Predicted N-acetylgluc 99.2 2.3E-08 5.1E-13 94.7 25.5 218 112-332 48-279 (389)
60 KOG1173 Anaphase-promoting com 99.2 1.2E-07 2.6E-12 96.7 32.3 498 30-548 16-531 (611)
61 KOG1840 Kinesin light chain [C 99.2 7.2E-09 1.6E-13 108.6 23.5 230 338-567 200-477 (508)
62 KOG2376 Signal recognition par 99.1 4.4E-07 9.5E-12 93.1 34.7 433 109-566 22-517 (652)
63 KOG1174 Anaphase-promoting com 99.1 5.5E-07 1.2E-11 88.2 33.2 302 234-541 192-506 (564)
64 KOG4162 Predicted calmodulin-b 99.1 9.7E-07 2.1E-11 93.4 36.2 405 165-580 318-793 (799)
65 COG3071 HemY Uncharacterized e 99.1 3E-07 6.6E-12 90.1 28.0 290 112-436 97-394 (400)
66 KOG1840 Kinesin light chain [C 99.0 1.4E-07 3E-12 99.2 26.4 234 273-534 201-478 (508)
67 PRK12370 invasion protein regu 99.0 5.3E-08 1.1E-12 107.2 24.6 243 317-569 276-535 (553)
68 KOG3785 Uncharacterized conser 99.0 1.6E-06 3.4E-11 83.4 30.3 157 406-575 362-520 (557)
69 KOG0985 Vesicle coat protein c 99.0 6.9E-06 1.5E-10 89.0 38.0 465 71-565 609-1245(1666)
70 TIGR02521 type_IV_pilW type IV 99.0 1.7E-07 3.8E-12 91.1 23.3 198 302-535 31-232 (234)
71 PRK11189 lipoprotein NlpI; Pro 98.9 1E-07 2.3E-12 95.9 20.4 189 373-570 65-266 (296)
72 PRK12370 invasion protein regu 98.9 1.5E-07 3.3E-12 103.6 23.2 209 352-568 276-501 (553)
73 KOG4162 Predicted calmodulin-b 98.9 8.8E-06 1.9E-10 86.4 33.9 437 66-541 321-789 (799)
74 KOG0547 Translocase of outer m 98.9 1.8E-06 3.8E-11 86.7 27.1 338 207-568 121-490 (606)
75 KOG3616 Selective LIM binding 98.9 1.6E-05 3.5E-10 83.3 34.7 460 42-569 502-1024(1636)
76 KOG1129 TPR repeat-containing 98.9 6.8E-08 1.5E-12 91.5 16.0 230 306-570 227-459 (478)
77 KOG2376 Signal recognition par 98.9 2.9E-05 6.2E-10 80.1 35.3 443 34-501 16-518 (652)
78 COG3063 PilF Tfp pilus assembl 98.9 2.7E-07 5.8E-12 83.9 17.9 162 405-571 37-204 (250)
79 KOG3785 Uncharacterized conser 98.9 3E-06 6.6E-11 81.4 25.8 189 377-570 290-491 (557)
80 PRK11189 lipoprotein NlpI; Pro 98.8 8.8E-07 1.9E-11 89.3 23.4 216 317-540 41-270 (296)
81 KOG3616 Selective LIM binding 98.8 3.4E-05 7.4E-10 81.0 33.7 217 311-565 715-933 (1636)
82 KOG1156 N-terminal acetyltrans 98.8 0.00016 3.6E-09 75.5 37.8 453 33-534 11-510 (700)
83 KOG1156 N-terminal acetyltrans 98.8 7.5E-05 1.6E-09 78.0 34.9 94 477-570 374-469 (700)
84 KOG1174 Anaphase-promoting com 98.8 6.6E-05 1.4E-09 74.1 32.5 365 67-437 96-503 (564)
85 PF12569 NARP1: NMDA receptor- 98.8 4.7E-05 1E-09 81.4 34.4 255 306-565 198-516 (517)
86 KOG3617 WD40 and TPR repeat-co 98.7 5.8E-05 1.3E-09 80.5 32.9 358 66-463 724-1170(1416)
87 KOG1127 TPR repeat-containing 98.7 3E-05 6.4E-10 84.5 30.9 496 68-568 492-1103(1238)
88 KOG1129 TPR repeat-containing 98.7 7.1E-07 1.5E-11 84.8 16.6 222 274-500 226-455 (478)
89 KOG0985 Vesicle coat protein c 98.7 0.00013 2.9E-09 79.5 35.3 410 34-498 842-1303(1666)
90 PF12569 NARP1: NMDA receptor- 98.6 3E-05 6.6E-10 82.8 27.1 84 410-498 201-286 (517)
91 KOG1125 TPR repeat-containing 98.6 1.9E-06 4.1E-11 88.6 16.5 218 348-568 296-526 (579)
92 cd05804 StaR_like StaR_like; a 98.6 9.2E-05 2E-09 77.4 29.8 195 376-570 118-337 (355)
93 COG3063 PilF Tfp pilus assembl 98.6 1.1E-05 2.3E-10 73.7 19.1 190 377-568 40-235 (250)
94 PRK04841 transcriptional regul 98.6 0.0026 5.5E-08 75.7 44.8 357 178-536 349-761 (903)
95 PF04733 Coatomer_E: Coatomer 98.5 7.9E-06 1.7E-10 81.2 19.6 158 376-540 106-270 (290)
96 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 59.6 4.3 34 265-298 1-34 (34)
97 KOG3617 WD40 and TPR repeat-co 98.5 0.0005 1.1E-08 73.6 32.7 413 91-566 718-1171(1416)
98 KOG1070 rRNA processing protei 98.5 1.5E-05 3.2E-10 89.7 21.3 199 369-571 1455-1665(1710)
99 KOG4340 Uncharacterized conser 98.5 0.00012 2.6E-09 69.1 23.8 311 72-399 14-337 (459)
100 KOG0548 Molecular co-chaperone 98.5 0.0001 2.2E-09 75.6 25.2 215 342-570 229-456 (539)
101 PRK04841 transcriptional regul 98.5 0.00014 3E-09 86.4 30.9 323 247-569 385-760 (903)
102 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.3E-12 58.4 4.0 33 367-399 2-34 (34)
103 PF04733 Coatomer_E: Coatomer 98.4 2.3E-06 5E-11 85.0 12.9 149 411-568 110-264 (290)
104 cd05804 StaR_like StaR_like; a 98.4 0.00047 1E-08 72.0 30.7 90 307-398 119-212 (355)
105 KOG4340 Uncharacterized conser 98.4 2.6E-05 5.7E-10 73.5 17.9 311 239-566 13-336 (459)
106 KOG1914 mRNA cleavage and poly 98.4 0.0044 9.6E-08 63.8 37.8 419 66-491 18-527 (656)
107 KOG1128 Uncharacterized conser 98.4 1.7E-05 3.7E-10 83.8 16.9 219 268-568 395-615 (777)
108 TIGR03302 OM_YfiO outer membra 98.3 3.9E-05 8.5E-10 74.8 18.6 180 370-569 31-232 (235)
109 KOG1125 TPR repeat-containing 98.3 6.6E-05 1.4E-09 77.5 19.8 215 247-466 296-526 (579)
110 PRK10370 formate-dependent nit 98.3 3.6E-05 7.7E-10 72.2 16.7 118 451-570 52-174 (198)
111 KOG0624 dsRNA-activated protei 98.3 0.001 2.2E-08 64.4 26.0 306 206-540 43-375 (504)
112 KOG0548 Molecular co-chaperone 98.3 0.00081 1.8E-08 69.1 27.0 166 378-552 304-472 (539)
113 PLN02789 farnesyltranstransfer 98.3 0.00022 4.9E-09 71.8 22.9 175 375-553 74-268 (320)
114 PRK15359 type III secretion sy 98.3 2.3E-05 5.1E-10 69.4 13.7 122 424-551 14-137 (144)
115 KOG1127 TPR repeat-containing 98.3 0.00094 2E-08 73.3 27.9 174 389-567 800-994 (1238)
116 KOG1128 Uncharacterized conser 98.2 3.7E-05 8E-10 81.3 16.6 189 367-570 393-583 (777)
117 KOG1070 rRNA processing protei 98.2 0.00024 5.3E-09 80.3 23.3 220 233-453 1454-1686(1710)
118 TIGR03302 OM_YfiO outer membra 98.2 0.00013 2.8E-09 71.2 18.3 179 338-537 34-234 (235)
119 KOG0624 dsRNA-activated protei 98.2 0.0019 4.1E-08 62.6 24.8 306 171-500 39-367 (504)
120 TIGR00756 PPR pentatricopeptid 98.2 3.2E-06 7E-11 54.2 4.6 35 404-438 1-35 (35)
121 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.8E-11 53.7 4.3 35 303-337 1-35 (35)
122 PRK15359 type III secretion sy 98.1 3E-05 6.5E-10 68.7 11.0 98 470-569 22-121 (144)
123 PRK10370 formate-dependent nit 98.1 0.00036 7.7E-09 65.5 18.5 154 379-544 23-182 (198)
124 PRK15363 pathogenicity island 98.1 8E-05 1.7E-09 64.9 12.8 117 475-614 36-154 (157)
125 PRK15179 Vi polysaccharide bio 98.1 0.00033 7.1E-09 78.0 20.6 141 401-546 84-228 (694)
126 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3E-10 50.8 4.5 33 404-436 2-34 (34)
127 PRK14720 transcript cleavage f 98.0 0.0019 4.2E-08 72.7 23.9 165 238-431 33-197 (906)
128 COG5010 TadD Flp pilus assembl 97.9 0.00059 1.3E-08 63.9 16.3 126 442-569 70-197 (257)
129 PRK15179 Vi polysaccharide bio 97.9 0.0011 2.5E-08 73.8 21.3 143 367-513 81-229 (694)
130 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3.1E-10 50.7 3.9 34 201-234 1-34 (34)
131 COG5010 TadD Flp pilus assembl 97.9 0.00098 2.1E-08 62.5 17.0 155 376-533 70-229 (257)
132 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00059 1.3E-08 70.2 16.0 126 374-504 171-298 (395)
133 KOG2053 Mitochondrial inherita 97.8 0.087 1.9E-06 58.0 38.3 67 508-574 438-507 (932)
134 TIGR02552 LcrH_SycD type III s 97.8 0.00022 4.8E-09 62.6 11.2 95 475-569 18-114 (135)
135 PRK14720 transcript cleavage f 97.8 0.0086 1.9E-07 67.7 25.4 218 200-466 30-251 (906)
136 COG4783 Putative Zn-dependent 97.8 0.0024 5.3E-08 65.2 19.2 144 404-569 307-454 (484)
137 PLN02789 farnesyltranstransfer 97.8 0.004 8.7E-08 62.9 20.9 184 380-567 45-248 (320)
138 COG4783 Putative Zn-dependent 97.8 0.0053 1.2E-07 62.8 21.4 119 448-568 316-436 (484)
139 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8E-10 47.5 3.6 31 404-434 1-31 (31)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00072 1.6E-08 69.6 14.4 119 174-328 173-294 (395)
141 PF01535 PPR: PPR repeat; Int 97.7 4E-05 8.6E-10 47.4 3.3 31 202-232 1-31 (31)
142 KOG3081 Vesicle coat complex C 97.7 0.021 4.5E-07 53.9 21.3 144 379-559 115-260 (299)
143 KOG1914 mRNA cleavage and poly 97.6 0.12 2.7E-06 53.7 37.1 211 354-567 310-537 (656)
144 PF04840 Vps16_C: Vps16, C-ter 97.6 0.12 2.5E-06 52.3 28.5 122 376-517 181-302 (319)
145 TIGR02552 LcrH_SycD type III s 97.6 0.0025 5.5E-08 55.8 14.0 113 425-541 5-120 (135)
146 KOG2053 Mitochondrial inherita 97.5 0.22 4.8E-06 55.0 41.0 216 42-267 21-257 (932)
147 PF13414 TPR_11: TPR repeat; P 97.5 0.00027 5.8E-09 53.6 6.0 64 505-568 2-66 (69)
148 PF09976 TPR_21: Tetratricopep 97.5 0.0036 7.8E-08 55.6 13.8 84 481-565 55-143 (145)
149 cd00189 TPR Tetratricopeptide 97.5 0.0012 2.6E-08 53.1 10.0 92 477-568 3-96 (100)
150 COG3898 Uncharacterized membra 97.4 0.12 2.7E-06 51.4 23.5 240 315-568 133-391 (531)
151 KOG3081 Vesicle coat complex C 97.4 0.054 1.2E-06 51.2 20.0 111 379-492 144-259 (299)
152 KOG3060 Uncharacterized conser 97.4 0.04 8.6E-07 51.7 19.0 161 377-540 57-225 (289)
153 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0043 9.3E-08 52.8 12.2 96 446-541 10-111 (119)
154 PLN03088 SGT1, suppressor of 97.3 0.0029 6.3E-08 65.5 13.0 92 448-541 12-105 (356)
155 PF12895 Apc3: Anaphase-promot 97.3 0.00026 5.7E-09 56.1 4.1 59 506-565 25-83 (84)
156 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0029 6.3E-08 53.8 10.8 96 475-570 3-106 (119)
157 PF13432 TPR_16: Tetratricopep 97.3 0.00063 1.4E-08 50.8 5.8 58 512-569 3-60 (65)
158 PRK10153 DNA-binding transcrip 97.3 0.013 2.8E-07 63.5 17.5 62 506-568 420-481 (517)
159 PF09976 TPR_21: Tetratricopep 97.3 0.013 2.7E-07 52.1 14.8 123 406-532 15-144 (145)
160 PRK02603 photosystem I assembl 97.2 0.0094 2E-07 54.7 14.1 130 402-555 34-166 (172)
161 KOG3060 Uncharacterized conser 97.2 0.039 8.4E-07 51.7 16.8 181 385-569 25-220 (289)
162 KOG0553 TPR repeat-containing 97.2 0.0078 1.7E-07 57.8 12.7 99 447-548 90-191 (304)
163 PF05843 Suf: Suppressor of fo 97.1 0.019 4E-07 57.3 16.1 143 404-550 2-150 (280)
164 PF04840 Vps16_C: Vps16, C-ter 97.1 0.37 7.9E-06 48.7 28.8 109 273-397 179-287 (319)
165 CHL00033 ycf3 photosystem I as 97.1 0.0042 9.2E-08 56.8 10.3 94 474-567 35-140 (168)
166 PRK02603 photosystem I assembl 97.1 0.0054 1.2E-07 56.3 11.1 81 475-555 36-121 (172)
167 PF14559 TPR_19: Tetratricopep 97.0 0.00089 1.9E-08 50.4 4.2 53 517-569 2-54 (68)
168 CHL00033 ycf3 photosystem I as 97.0 0.043 9.3E-07 50.1 16.0 80 403-485 35-117 (168)
169 cd00189 TPR Tetratricopeptide 97.0 0.013 2.7E-07 46.8 11.2 88 406-497 3-91 (100)
170 PLN03088 SGT1, suppressor of 96.9 0.013 2.9E-07 60.6 13.5 103 409-516 8-113 (356)
171 KOG2280 Vacuolar assembly/sort 96.9 0.83 1.8E-05 49.7 27.7 336 128-496 425-792 (829)
172 KOG0553 TPR repeat-containing 96.9 0.0029 6.2E-08 60.7 7.6 87 482-568 89-177 (304)
173 PF13432 TPR_16: Tetratricopep 96.9 0.0036 7.8E-08 46.6 6.8 61 480-540 3-65 (65)
174 KOG2041 WD40 repeat protein [G 96.9 0.82 1.8E-05 49.2 27.0 146 379-535 930-1086(1189)
175 PF13371 TPR_9: Tetratricopept 96.9 0.0023 5E-08 48.9 5.7 57 514-570 3-59 (73)
176 PF12895 Apc3: Anaphase-promot 96.9 0.0032 7E-08 49.8 6.6 79 416-498 2-82 (84)
177 PF14938 SNAP: Soluble NSF att 96.9 0.57 1.2E-05 46.9 25.0 96 406-501 158-264 (282)
178 PRK15331 chaperone protein Sic 96.9 0.017 3.7E-07 50.9 11.3 86 483-568 46-133 (165)
179 PF10037 MRP-S27: Mitochondria 96.9 0.013 2.7E-07 60.9 12.2 82 203-284 105-186 (429)
180 PF06239 ECSIT: Evolutionarily 96.9 0.0094 2E-07 54.7 9.8 137 8-163 24-167 (228)
181 PF13431 TPR_17: Tetratricopep 96.8 0.0008 1.7E-08 42.3 2.0 33 529-561 2-34 (34)
182 KOG2796 Uncharacterized conser 96.8 0.088 1.9E-06 49.6 15.9 170 274-445 139-326 (366)
183 PF08579 RPM2: Mitochondrial r 96.8 0.011 2.4E-07 48.0 8.7 79 205-283 29-116 (120)
184 PF10037 MRP-S27: Mitochondria 96.8 0.03 6.6E-07 58.1 14.1 118 334-451 63-186 (429)
185 PF14938 SNAP: Soluble NSF att 96.7 0.73 1.6E-05 46.1 23.6 28 376-403 239-268 (282)
186 KOG1538 Uncharacterized conser 96.7 0.33 7.1E-06 51.6 20.4 10 98-107 498-507 (1081)
187 PF05843 Suf: Suppressor of fo 96.7 0.04 8.8E-07 54.9 13.9 133 304-440 3-142 (280)
188 PF08579 RPM2: Mitochondrial r 96.6 0.016 3.6E-07 47.0 8.6 81 304-384 27-116 (120)
189 PF13281 DUF4071: Domain of un 96.6 0.16 3.5E-06 51.7 17.6 157 380-539 149-338 (374)
190 KOG0550 Molecular chaperone (D 96.6 0.067 1.5E-06 53.7 14.4 263 279-569 57-350 (486)
191 COG4235 Cytochrome c biogenesi 96.6 0.052 1.1E-06 52.6 13.5 101 471-571 153-258 (287)
192 PF12688 TPR_5: Tetratrico pep 96.6 0.059 1.3E-06 45.5 12.3 91 408-498 6-99 (120)
193 KOG1130 Predicted G-alpha GTPa 96.6 0.019 4.1E-07 57.3 10.3 129 440-568 197-343 (639)
194 PF06239 ECSIT: Evolutionarily 96.5 0.03 6.5E-07 51.5 10.7 98 392-490 34-154 (228)
195 PRK15363 pathogenicity island 96.5 0.083 1.8E-06 46.4 13.0 95 377-472 40-137 (157)
196 PF13414 TPR_11: TPR repeat; P 96.5 0.0068 1.5E-07 45.7 5.7 64 474-537 3-69 (69)
197 KOG1538 Uncharacterized conser 96.5 0.37 8E-06 51.2 19.4 70 138-228 601-672 (1081)
198 COG4700 Uncharacterized protei 96.4 0.45 9.7E-06 42.6 16.8 131 434-568 85-221 (251)
199 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.012 2.6E-07 60.6 8.3 63 506-568 75-140 (453)
200 PRK10866 outer membrane biogen 96.3 0.56 1.2E-05 45.5 19.0 56 277-332 38-99 (243)
201 KOG1130 Predicted G-alpha GTPa 96.3 0.029 6.2E-07 56.0 9.7 255 210-465 26-342 (639)
202 PF14559 TPR_19: Tetratricopep 96.2 0.0056 1.2E-07 46.0 3.8 49 450-500 3-51 (68)
203 KOG2280 Vacuolar assembly/sort 96.2 2.5 5.4E-05 46.3 25.8 325 35-395 442-793 (829)
204 PRK10153 DNA-binding transcrip 96.2 0.16 3.6E-06 55.0 16.3 59 404-464 421-479 (517)
205 PF07079 DUF1347: Protein of u 96.2 1.8 3.9E-05 44.5 39.3 449 42-512 18-531 (549)
206 PRK10866 outer membrane biogen 96.2 0.35 7.5E-06 47.0 16.7 169 378-567 38-239 (243)
207 KOG2041 WD40 repeat protein [G 96.1 2.5 5.5E-05 45.7 23.2 146 309-463 930-1082(1189)
208 PF12688 TPR_5: Tetratrico pep 96.1 0.13 2.8E-06 43.4 11.6 105 208-312 8-116 (120)
209 PF13428 TPR_14: Tetratricopep 96.0 0.014 3.1E-07 39.3 4.3 42 507-548 2-43 (44)
210 KOG2796 Uncharacterized conser 95.9 0.36 7.9E-06 45.6 14.6 165 375-539 139-319 (366)
211 PF09205 DUF1955: Domain of un 95.9 0.55 1.2E-05 39.4 13.8 139 415-572 14-152 (161)
212 PF03704 BTAD: Bacterial trans 95.8 0.12 2.7E-06 45.7 11.3 62 507-568 63-124 (146)
213 PRK10803 tol-pal system protei 95.8 0.059 1.3E-06 52.8 9.8 92 477-568 146-245 (263)
214 KOG2066 Vacuolar assembly/sort 95.7 4.3 9.4E-05 44.7 23.7 76 170-248 392-467 (846)
215 PRK10803 tol-pal system protei 95.7 0.21 4.6E-06 48.9 12.8 94 414-540 154-251 (263)
216 PF12921 ATP13: Mitochondrial 95.6 0.15 3.3E-06 43.5 10.3 49 434-482 48-96 (126)
217 COG4700 Uncharacterized protei 95.6 1.3 2.7E-05 39.9 15.7 90 342-431 94-188 (251)
218 PF13371 TPR_9: Tetratricopept 95.6 0.047 1E-06 41.5 6.5 62 482-543 3-66 (73)
219 PF13424 TPR_12: Tetratricopep 95.3 0.026 5.7E-07 43.7 4.4 63 506-568 5-74 (78)
220 KOG0543 FKBP-type peptidyl-pro 95.2 0.15 3.3E-06 51.4 10.0 63 506-568 257-319 (397)
221 KOG0550 Molecular chaperone (D 94.9 5.2 0.00011 40.8 21.2 150 310-466 177-349 (486)
222 PF12921 ATP13: Mitochondrial 94.9 0.34 7.4E-06 41.3 10.1 78 438-515 2-97 (126)
223 KOG1941 Acetylcholine receptor 94.8 1.3 2.8E-05 44.0 14.7 192 374-566 45-272 (518)
224 PF13525 YfiO: Outer membrane 94.5 3.1 6.6E-05 39.2 16.8 160 380-560 13-198 (203)
225 PF04184 ST7: ST7 protein; In 94.5 1.4 3E-05 46.1 14.9 154 415-580 180-335 (539)
226 smart00299 CLH Clathrin heavy 94.3 2.3 4.9E-05 37.2 14.7 85 139-227 11-95 (140)
227 PF13424 TPR_12: Tetratricopep 94.3 0.09 2E-06 40.6 5.0 62 405-466 7-74 (78)
228 COG4235 Cytochrome c biogenesi 94.3 0.56 1.2E-05 45.7 11.2 44 288-331 210-256 (287)
229 PF07079 DUF1347: Protein of u 94.3 7.7 0.00017 40.1 34.1 71 496-567 446-522 (549)
230 PF13525 YfiO: Outer membrane 94.2 5 0.00011 37.8 17.8 47 446-492 149-196 (203)
231 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.49 1.1E-05 49.1 10.8 62 370-431 73-140 (453)
232 PF03704 BTAD: Bacterial trans 93.9 0.67 1.5E-05 41.0 10.5 67 408-475 67-137 (146)
233 COG3898 Uncharacterized membra 93.9 8.2 0.00018 39.1 26.6 283 204-499 85-388 (531)
234 smart00299 CLH Clathrin heavy 93.9 2 4.4E-05 37.5 13.4 65 440-517 71-136 (140)
235 KOG1920 IkappaB kinase complex 93.9 9.8 0.00021 44.2 21.1 152 386-565 894-1051(1265)
236 KOG4555 TPR repeat-containing 93.5 0.64 1.4E-05 39.0 8.5 90 482-571 51-146 (175)
237 COG0457 NrfG FOG: TPR repeat [ 93.5 6.9 0.00015 36.8 25.7 195 372-568 59-264 (291)
238 KOG3941 Intermediate in Toll s 93.5 0.76 1.7E-05 44.0 10.0 100 391-491 53-175 (406)
239 PF04053 Coatomer_WDAD: Coatom 93.2 2 4.4E-05 45.6 14.1 157 109-297 271-428 (443)
240 PF13281 DUF4071: Domain of un 93.2 7.3 0.00016 40.0 17.4 72 276-347 146-227 (374)
241 KOG0543 FKBP-type peptidyl-pro 93.1 3.3 7.1E-05 42.2 14.5 94 476-569 259-355 (397)
242 KOG2114 Vacuolar assembly/sort 93.0 18 0.0004 40.5 30.9 118 71-197 337-458 (933)
243 PF08631 SPO22: Meiosis protei 93.0 11 0.00023 37.6 21.5 97 340-438 87-192 (278)
244 PF00515 TPR_1: Tetratricopept 92.9 0.2 4.3E-06 31.3 3.9 32 507-538 2-33 (34)
245 KOG2114 Vacuolar assembly/sort 92.9 19 0.00041 40.4 23.2 43 413-459 715-757 (933)
246 PRK11906 transcriptional regul 92.8 5.5 0.00012 41.7 16.0 143 419-564 274-431 (458)
247 KOG3941 Intermediate in Toll s 92.7 0.66 1.4E-05 44.4 8.5 99 289-387 52-173 (406)
248 COG1729 Uncharacterized protei 92.5 0.9 1.9E-05 43.7 9.3 91 476-569 144-244 (262)
249 PF07719 TPR_2: Tetratricopept 92.4 0.33 7.2E-06 30.1 4.5 32 508-539 3-34 (34)
250 PF04053 Coatomer_WDAD: Coatom 92.2 4.9 0.00011 42.8 15.4 157 211-398 271-428 (443)
251 PRK11906 transcriptional regul 92.2 2.5 5.4E-05 44.1 12.7 117 453-569 273-401 (458)
252 COG3118 Thioredoxin domain-con 91.6 5.6 0.00012 38.8 13.5 121 447-570 143-266 (304)
253 KOG2610 Uncharacterized conser 91.4 5 0.00011 39.7 12.8 152 384-540 115-283 (491)
254 COG5107 RNA14 Pre-mRNA 3'-end 91.2 21 0.00045 37.0 29.3 81 66-149 40-123 (660)
255 COG4785 NlpI Lipoprotein NlpI, 90.9 12 0.00027 34.7 14.1 179 385-570 78-267 (297)
256 COG1729 Uncharacterized protei 90.0 3.2 6.9E-05 40.1 10.3 91 406-499 145-240 (262)
257 PF07035 Mic1: Colon cancer-as 90.0 14 0.0003 33.2 14.3 134 221-366 14-149 (167)
258 PRK15331 chaperone protein Sic 89.9 11 0.00024 33.6 12.7 85 412-500 46-131 (165)
259 PF10300 DUF3808: Protein of u 89.4 21 0.00045 38.6 17.3 115 451-568 246-375 (468)
260 PF13512 TPR_18: Tetratricopep 88.9 9.1 0.0002 33.2 11.3 56 485-540 21-81 (142)
261 PF04184 ST7: ST7 protein; In 88.9 15 0.00033 38.7 14.8 97 443-539 264-379 (539)
262 PF09205 DUF1955: Domain of un 88.9 12 0.00026 31.8 11.4 61 306-367 90-150 (161)
263 COG4105 ComL DNA uptake lipopr 88.9 23 0.00049 34.1 17.2 165 281-463 44-229 (254)
264 KOG1585 Protein required for f 88.8 22 0.00047 33.8 16.2 86 477-563 153-250 (308)
265 PF10300 DUF3808: Protein of u 88.5 6.5 0.00014 42.4 12.7 54 176-229 311-375 (468)
266 PF07035 Mic1: Colon cancer-as 88.4 19 0.0004 32.4 15.0 114 405-530 31-144 (167)
267 PRK09687 putative lyase; Provi 87.9 31 0.00066 34.3 27.4 75 370-449 204-278 (280)
268 KOG2610 Uncharacterized conser 87.6 7.2 0.00016 38.6 10.9 160 415-577 115-284 (491)
269 PF13512 TPR_18: Tetratricopep 87.5 18 0.0004 31.4 12.3 112 411-539 18-132 (142)
270 PF13176 TPR_7: Tetratricopept 87.4 1.4 3E-05 27.9 4.2 26 405-430 1-26 (36)
271 COG3947 Response regulator con 87.4 25 0.00055 34.3 14.1 56 513-568 286-341 (361)
272 COG3629 DnrI DNA-binding trans 87.1 4.1 9E-05 39.9 9.1 76 372-447 153-236 (280)
273 PF00515 TPR_1: Tetratricopept 87.0 1.4 3E-05 27.3 4.1 32 404-437 2-33 (34)
274 PF13428 TPR_14: Tetratricopep 86.9 2.1 4.5E-05 28.6 5.1 33 405-439 3-35 (44)
275 KOG1464 COP9 signalosome, subu 86.9 30 0.00066 33.2 16.5 228 285-519 41-317 (440)
276 PF13181 TPR_8: Tetratricopept 86.8 1.1 2.3E-05 27.8 3.4 31 508-538 3-33 (34)
277 PF13176 TPR_7: Tetratricopept 86.6 1.1 2.3E-05 28.4 3.4 23 509-531 2-24 (36)
278 TIGR02508 type_III_yscG type I 86.4 9.4 0.0002 30.5 8.9 86 354-443 22-107 (115)
279 KOG4555 TPR repeat-containing 86.3 2 4.3E-05 36.2 5.5 54 515-568 52-105 (175)
280 KOG4234 TPR repeat-containing 86.3 2.4 5.2E-05 38.6 6.4 87 484-570 105-198 (271)
281 COG3118 Thioredoxin domain-con 86.2 36 0.00078 33.5 15.8 139 413-554 144-286 (304)
282 COG0457 NrfG FOG: TPR repeat [ 85.8 30 0.00066 32.2 25.5 92 271-363 59-156 (291)
283 PF09613 HrpB1_HrpK: Bacterial 85.8 3 6.5E-05 36.9 6.7 54 517-570 21-74 (160)
284 KOG1258 mRNA processing protei 85.5 59 0.0013 35.3 29.4 182 371-555 296-490 (577)
285 COG5107 RNA14 Pre-mRNA 3'-end 85.5 50 0.0011 34.4 33.0 397 167-568 39-530 (660)
286 PF13170 DUF4003: Protein of u 85.3 19 0.00041 36.1 13.0 63 420-483 160-226 (297)
287 PF10345 Cohesin_load: Cohesin 85.1 72 0.0016 35.9 33.7 160 101-262 61-251 (608)
288 KOG1941 Acetylcholine receptor 85.0 46 0.001 33.6 15.4 162 304-465 85-273 (518)
289 PF13170 DUF4003: Protein of u 84.7 17 0.00036 36.5 12.3 59 319-377 160-222 (297)
290 PF02259 FAT: FAT domain; Int 84.7 51 0.0011 33.9 20.8 66 401-466 144-212 (352)
291 PF02259 FAT: FAT domain; Int 84.6 51 0.0011 33.9 18.7 65 505-569 145-213 (352)
292 PF10602 RPN7: 26S proteasome 84.2 27 0.00057 32.0 12.6 59 406-464 39-99 (177)
293 KOG4570 Uncharacterized conser 83.5 9.7 0.00021 37.4 9.5 98 366-467 58-164 (418)
294 TIGR02561 HrpB1_HrpK type III 83.5 3.9 8.4E-05 35.6 6.2 54 518-571 22-75 (153)
295 COG3629 DnrI DNA-binding trans 83.0 5.2 0.00011 39.2 7.7 61 508-568 155-215 (280)
296 KOG1920 IkappaB kinase complex 82.3 1.1E+02 0.0025 36.1 19.7 110 380-500 916-1025(1265)
297 COG4649 Uncharacterized protei 82.2 25 0.00054 31.5 10.7 26 274-299 170-195 (221)
298 PF09613 HrpB1_HrpK: Bacterial 82.1 36 0.00078 30.2 13.0 89 446-537 18-108 (160)
299 PF04097 Nic96: Nup93/Nic96; 82.0 95 0.002 35.0 23.7 86 309-399 265-354 (613)
300 KOG4570 Uncharacterized conser 81.7 9.7 0.00021 37.4 8.8 97 66-165 62-165 (418)
301 PF07719 TPR_2: Tetratricopept 81.5 3.4 7.3E-05 25.3 4.1 27 405-431 3-29 (34)
302 KOG4648 Uncharacterized conser 81.0 2.8 6E-05 41.4 5.0 112 446-564 105-219 (536)
303 PF04097 Nic96: Nup93/Nic96; 80.7 1E+02 0.0023 34.6 23.6 49 98-149 111-159 (613)
304 KOG4648 Uncharacterized conser 80.4 9.8 0.00021 37.7 8.4 46 412-459 106-152 (536)
305 PF00637 Clathrin: Region in C 79.9 1.3 2.8E-05 38.9 2.4 84 141-227 13-96 (143)
306 KOG0890 Protein kinase of the 79.3 2E+02 0.0044 37.0 29.6 278 274-570 1423-1732(2382)
307 PF10602 RPN7: 26S proteasome 79.1 14 0.00031 33.8 8.9 59 204-262 39-99 (177)
308 PF13929 mRNA_stabil: mRNA sta 78.9 58 0.0012 32.1 13.1 54 167-220 199-257 (292)
309 PF13374 TPR_10: Tetratricopep 78.5 2.9 6.2E-05 27.1 3.2 28 541-568 3-30 (42)
310 KOG0276 Vesicle coat complex C 78.2 24 0.00053 38.0 11.0 39 283-324 598-636 (794)
311 PF02284 COX5A: Cytochrome c o 77.9 17 0.00037 29.3 7.5 60 421-482 28-87 (108)
312 PF00637 Clathrin: Region in C 77.6 3.3 7.1E-05 36.3 4.2 85 36-126 13-97 (143)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 76.9 22 0.00047 28.4 7.8 60 421-482 25-84 (103)
314 KOG4279 Serine/threonine prote 76.9 54 0.0012 36.4 13.3 183 306-539 205-399 (1226)
315 PF14853 Fis1_TPR_C: Fis1 C-te 76.4 3.8 8.2E-05 28.7 3.3 31 511-541 6-36 (53)
316 PF06552 TOM20_plant: Plant sp 76.3 9.5 0.00021 34.4 6.5 46 522-567 51-100 (186)
317 KOG2066 Vacuolar assembly/sort 76.1 1.4E+02 0.0031 33.6 23.6 140 70-229 394-533 (846)
318 TIGR02508 type_III_yscG type I 76.0 32 0.00069 27.7 8.5 78 252-332 21-98 (115)
319 KOG1585 Protein required for f 75.9 76 0.0016 30.4 15.2 82 239-328 34-117 (308)
320 PF13431 TPR_17: Tetratricopep 75.8 4.2 9.2E-05 25.3 3.1 24 369-392 10-33 (34)
321 PF13374 TPR_10: Tetratricopep 75.8 6.4 0.00014 25.4 4.3 28 404-431 3-30 (42)
322 PF07721 TPR_4: Tetratricopept 75.5 3.3 7.1E-05 23.9 2.4 24 541-564 2-25 (26)
323 PRK09687 putative lyase; Provi 75.4 91 0.002 31.0 26.7 60 269-328 35-98 (280)
324 PF13181 TPR_8: Tetratricopept 74.0 5.4 0.00012 24.5 3.4 27 405-431 3-29 (34)
325 PF13762 MNE1: Mitochondrial s 73.5 43 0.00092 29.3 9.6 76 376-451 43-128 (145)
326 PF02284 COX5A: Cytochrome c o 73.4 20 0.00043 29.0 6.9 50 498-547 37-86 (108)
327 PF09477 Type_III_YscG: Bacter 72.6 51 0.0011 26.9 9.1 87 352-442 21-107 (116)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 72.5 21 0.00046 28.5 6.8 50 498-547 34-83 (103)
329 PF11207 DUF2989: Protein of u 71.8 19 0.00042 33.2 7.5 74 486-560 119-198 (203)
330 PHA02875 ankyrin repeat protei 70.7 1.5E+02 0.0032 31.4 18.4 148 278-438 72-230 (413)
331 smart00028 TPR Tetratricopepti 70.2 8.6 0.00019 22.3 3.8 29 509-537 4-32 (34)
332 PRK10941 hypothetical protein; 69.9 18 0.00038 35.6 7.5 61 509-569 184-244 (269)
333 PF11207 DUF2989: Protein of u 68.5 38 0.00083 31.4 8.7 73 420-493 123-197 (203)
334 PF13174 TPR_6: Tetratricopept 68.4 5.8 0.00013 24.0 2.6 28 542-569 2-29 (33)
335 PF13174 TPR_6: Tetratricopept 68.4 8.6 0.00019 23.2 3.4 27 512-538 6-32 (33)
336 COG4105 ComL DNA uptake lipopr 68.1 1.2E+02 0.0026 29.3 19.0 66 410-475 41-108 (254)
337 PF14853 Fis1_TPR_C: Fis1 C-te 67.3 30 0.00066 24.2 6.1 26 543-568 4-29 (53)
338 KOG0276 Vesicle coat complex C 67.0 57 0.0012 35.4 10.6 101 180-297 647-747 (794)
339 COG4649 Uncharacterized protei 65.1 1.1E+02 0.0023 27.7 14.4 121 413-534 68-195 (221)
340 PRK11619 lytic murein transgly 64.9 2.5E+02 0.0054 31.8 31.9 250 275-534 103-374 (644)
341 PF04910 Tcf25: Transcriptiona 64.9 1.1E+02 0.0023 31.8 12.4 64 505-568 99-167 (360)
342 PF09477 Type_III_YscG: Bacter 64.4 79 0.0017 25.9 8.8 79 251-332 21-99 (116)
343 PRK13342 recombination factor 64.1 1.2E+02 0.0026 32.2 13.1 100 233-350 173-278 (413)
344 PRK15180 Vi polysaccharide bio 64.0 71 0.0015 33.6 10.4 46 449-496 334-379 (831)
345 PHA02875 ankyrin repeat protei 63.4 1.4E+02 0.0029 31.7 13.5 13 325-337 184-196 (413)
346 KOG3364 Membrane protein invol 63.4 73 0.0016 27.4 8.6 48 521-568 50-99 (149)
347 COG4785 NlpI Lipoprotein NlpI, 63.2 17 0.00036 33.8 5.3 89 448-540 75-167 (297)
348 PF13929 mRNA_stabil: mRNA sta 62.4 1.7E+02 0.0036 29.0 13.5 58 267-324 198-260 (292)
349 PF13762 MNE1: Mitochondrial s 62.0 40 0.00087 29.5 7.2 79 69-148 40-128 (145)
350 KOG1258 mRNA processing protei 59.6 2.7E+02 0.0058 30.5 29.5 178 270-449 296-486 (577)
351 KOG1586 Protein required for f 59.6 1.7E+02 0.0036 28.0 13.5 19 520-538 209-227 (288)
352 PF04190 DUF410: Protein of un 59.0 1.9E+02 0.004 28.4 14.4 97 209-305 18-124 (260)
353 KOG0403 Neoplastic transformat 59.0 2.4E+02 0.0052 29.7 19.1 58 376-433 513-573 (645)
354 KOG4234 TPR repeat-containing 58.8 67 0.0015 29.7 8.2 57 481-539 141-201 (271)
355 PF13934 ELYS: Nuclear pore co 58.3 1.3E+02 0.0029 28.7 10.9 33 485-517 151-183 (226)
356 PF10579 Rapsyn_N: Rapsyn N-te 57.8 26 0.00057 26.8 4.6 47 450-496 18-65 (80)
357 KOG1498 26S proteasome regulat 57.6 2.4E+02 0.0051 29.2 16.0 194 368-590 48-262 (439)
358 KOG1586 Protein required for f 57.3 1.8E+02 0.0039 27.8 14.2 13 315-327 27-39 (288)
359 COG4455 ImpE Protein of avirul 56.8 32 0.0007 32.2 5.9 64 477-540 4-69 (273)
360 KOG1550 Extracellular protein 56.7 3.2E+02 0.0069 30.4 23.2 45 521-568 490-537 (552)
361 PF08631 SPO22: Meiosis protei 56.6 2.1E+02 0.0046 28.3 24.5 17 549-565 255-271 (278)
362 KOG0292 Vesicle coat complex C 56.5 3.7E+02 0.008 31.1 21.2 130 179-330 652-781 (1202)
363 KOG1464 COP9 signalosome, subu 56.4 1.4E+02 0.003 29.0 10.2 182 385-566 40-258 (440)
364 PRK13342 recombination factor 55.4 2.3E+02 0.0049 30.1 13.3 43 203-245 229-274 (413)
365 PRK15180 Vi polysaccharide bio 55.2 65 0.0014 33.8 8.4 127 384-515 301-434 (831)
366 PF13934 ELYS: Nuclear pore co 54.7 1.8E+02 0.0039 27.8 11.1 113 384-505 90-203 (226)
367 PF11768 DUF3312: Protein of u 54.4 1.6E+02 0.0034 32.0 11.4 24 376-399 412-435 (545)
368 PRK13800 putative oxidoreducta 54.2 4.5E+02 0.0097 31.4 26.4 255 190-466 624-880 (897)
369 PF14561 TPR_20: Tetratricopep 54.0 29 0.00063 27.5 4.7 44 526-569 8-51 (90)
370 PRK13800 putative oxidoreducta 53.8 4.5E+02 0.0098 31.3 25.1 94 268-365 786-880 (897)
371 cd08819 CARD_MDA5_2 Caspase ac 52.9 87 0.0019 24.6 6.8 66 49-119 21-86 (88)
372 PF06552 TOM20_plant: Plant sp 52.5 70 0.0015 29.1 7.3 31 420-452 52-83 (186)
373 COG2976 Uncharacterized protei 52.4 2E+02 0.0043 26.7 14.6 113 421-538 70-191 (207)
374 TIGR02561 HrpB1_HrpK type III 52.1 1.7E+02 0.0036 25.8 11.8 66 450-518 22-89 (153)
375 PF09670 Cas_Cas02710: CRISPR- 50.4 2.7E+02 0.006 29.1 12.6 53 413-466 141-197 (379)
376 PF07163 Pex26: Pex26 protein; 50.3 1.3E+02 0.0028 29.5 9.1 87 208-294 90-181 (309)
377 smart00386 HAT HAT (Half-A-TPR 50.3 27 0.00059 20.6 3.4 29 520-548 1-29 (33)
378 KOG3807 Predicted membrane pro 50.1 2.5E+02 0.0053 28.2 11.0 101 350-463 229-336 (556)
379 PF11768 DUF3312: Protein of u 49.8 1.4E+02 0.003 32.4 10.1 26 101-126 410-435 (545)
380 PF14863 Alkyl_sulf_dimr: Alky 48.7 78 0.0017 27.6 6.9 66 490-558 57-122 (141)
381 TIGR03504 FimV_Cterm FimV C-te 48.3 26 0.00055 23.5 3.0 26 544-569 3-28 (44)
382 PF07163 Pex26: Pex26 protein; 47.4 2.1E+02 0.0045 28.2 9.9 88 410-500 90-184 (309)
383 KOG2063 Vacuolar assembly/sort 47.1 5.4E+02 0.012 30.2 17.6 126 101-247 506-637 (877)
384 KOG1308 Hsp70-interacting prot 47.0 15 0.00032 36.8 2.4 114 451-567 127-242 (377)
385 PF07720 TPR_3: Tetratricopept 46.3 62 0.0013 20.5 4.4 30 509-538 4-35 (36)
386 PF10366 Vps39_1: Vacuolar sor 46.1 1.7E+02 0.0037 24.2 8.6 27 304-330 41-67 (108)
387 PF11846 DUF3366: Domain of un 45.9 82 0.0018 29.2 7.3 35 503-537 141-175 (193)
388 PF10366 Vps39_1: Vacuolar sor 45.8 1.4E+02 0.003 24.7 7.7 28 202-229 40-67 (108)
389 PF08311 Mad3_BUB1_I: Mad3/BUB 44.0 1.5E+02 0.0032 25.3 7.9 42 524-565 81-124 (126)
390 TIGR03504 FimV_Cterm FimV C-te 43.5 57 0.0012 21.8 4.1 24 409-432 5-28 (44)
391 KOG4077 Cytochrome c oxidase, 42.9 1.2E+02 0.0027 25.7 6.7 70 422-502 68-137 (149)
392 PF10579 Rapsyn_N: Rapsyn N-te 42.8 72 0.0016 24.5 5.0 47 415-461 18-66 (80)
393 KOG4642 Chaperone-dependent E3 42.7 73 0.0016 30.4 6.0 67 501-567 38-105 (284)
394 PF04910 Tcf25: Transcriptiona 42.2 4.1E+02 0.009 27.5 16.5 96 445-548 110-232 (360)
395 PF11838 ERAP1_C: ERAP1-like C 42.1 3.8E+02 0.0082 27.0 17.8 86 450-535 142-230 (324)
396 PRK12798 chemotaxis protein; R 41.5 4.4E+02 0.0096 27.7 22.2 180 385-567 125-322 (421)
397 PF14689 SPOB_a: Sensor_kinase 41.5 46 0.00099 24.2 3.8 24 407-430 27-50 (62)
398 KOG0376 Serine-threonine phosp 41.2 46 0.001 35.0 5.0 82 486-567 16-99 (476)
399 COG2976 Uncharacterized protei 41.1 3E+02 0.0065 25.6 13.5 89 244-332 97-189 (207)
400 KOG4521 Nuclear pore complex, 41.1 7E+02 0.015 30.0 14.3 107 379-493 927-1073(1480)
401 KOG4507 Uncharacterized conser 40.8 75 0.0016 34.4 6.5 102 449-551 618-721 (886)
402 PRK11619 lytic murein transgly 39.9 6.1E+02 0.013 28.8 39.6 247 315-574 254-510 (644)
403 KOG0292 Vesicle coat complex C 39.7 49 0.0011 37.5 5.2 95 416-534 606-700 (1202)
404 PF11848 DUF3368: Domain of un 39.5 1.2E+02 0.0025 20.7 5.3 33 414-446 13-45 (48)
405 PRK10564 maltose regulon perip 38.5 60 0.0013 32.1 5.1 42 405-446 259-300 (303)
406 COG1747 Uncharacterized N-term 38.1 5.5E+02 0.012 27.8 22.0 257 305-567 2-286 (711)
407 cd08819 CARD_MDA5_2 Caspase ac 38.1 2E+02 0.0043 22.7 6.8 39 384-423 48-86 (88)
408 PF11663 Toxin_YhaV: Toxin wit 36.7 42 0.00091 28.7 3.3 33 313-347 106-138 (140)
409 PF15469 Sec5: Exocyst complex 36.7 3.3E+02 0.0072 24.8 11.5 87 443-545 91-178 (182)
410 PF07575 Nucleopor_Nup85: Nup8 36.5 2.6E+02 0.0055 31.3 10.5 94 201-298 372-465 (566)
411 PF15161 Neuropep_like: Neurop 36.4 16 0.00035 25.3 0.6 16 665-681 12-27 (65)
412 PF10345 Cohesin_load: Cohesin 36.4 6.7E+02 0.015 28.3 31.6 161 67-228 58-252 (608)
413 KOG3824 Huntingtin interacting 36.1 57 0.0012 32.1 4.4 58 486-543 128-187 (472)
414 COG3947 Response regulator con 36.0 4.5E+02 0.0098 26.1 13.6 56 274-329 282-340 (361)
415 KOG3824 Huntingtin interacting 35.9 61 0.0013 31.9 4.6 51 516-566 126-176 (472)
416 PF11663 Toxin_YhaV: Toxin wit 35.8 36 0.00077 29.1 2.7 32 415-448 107-138 (140)
417 PF04034 DUF367: Domain of unk 35.2 2.5E+02 0.0054 23.9 7.5 56 475-530 67-123 (127)
418 PRK09169 hypothetical protein; 34.0 1.2E+03 0.027 30.6 43.1 464 101-566 124-692 (2316)
419 PF11848 DUF3368: Domain of un 33.5 1.3E+02 0.0028 20.5 4.8 31 213-243 14-44 (48)
420 KOG2422 Uncharacterized conser 33.3 6.4E+02 0.014 27.7 11.8 53 515-567 351-405 (665)
421 KOG3364 Membrane protein invol 33.2 2.5E+02 0.0055 24.3 7.2 32 509-540 74-105 (149)
422 PRK10564 maltose regulon perip 33.1 63 0.0014 32.0 4.3 38 204-241 260-297 (303)
423 PF12862 Apc5: Anaphase-promot 33.1 1E+02 0.0023 24.5 5.0 52 517-568 9-69 (94)
424 PF06957 COPI_C: Coatomer (COP 32.5 1.4E+02 0.003 31.5 7.0 43 497-539 289-333 (422)
425 PF08225 Antimicrobial19: Pseu 32.3 30 0.00064 18.6 1.1 14 668-681 8-21 (23)
426 KOG2297 Predicted translation 31.7 5.4E+02 0.012 25.8 13.0 198 302-528 111-343 (412)
427 PF09986 DUF2225: Uncharacteri 31.5 2.7E+02 0.0058 26.4 8.2 59 511-569 123-194 (214)
428 PF10475 DUF2450: Protein of u 31.3 4.1E+02 0.0089 26.5 10.1 53 276-330 103-155 (291)
429 PRK10941 hypothetical protein; 31.2 4.2E+02 0.0091 26.2 9.8 69 407-477 185-254 (269)
430 KOG2300 Uncharacterized conser 31.0 7E+02 0.015 26.8 17.3 212 85-296 299-552 (629)
431 COG4455 ImpE Protein of avirul 30.6 4.8E+02 0.01 24.8 12.0 121 405-538 3-137 (273)
432 cd08326 CARD_CASP9 Caspase act 30.0 1.8E+02 0.0039 22.7 5.6 62 50-118 19-80 (84)
433 PF12968 DUF3856: Domain of Un 29.6 2.8E+02 0.006 23.4 6.7 20 547-566 107-126 (144)
434 PF14689 SPOB_a: Sensor_kinase 29.5 1.2E+02 0.0027 21.9 4.4 30 437-466 22-51 (62)
435 KOG4077 Cytochrome c oxidase, 29.1 2.6E+02 0.0057 23.8 6.5 37 499-535 77-113 (149)
436 PF11846 DUF3366: Domain of un 29.0 1.9E+02 0.0041 26.7 6.9 50 450-499 120-169 (193)
437 COG4976 Predicted methyltransf 28.5 82 0.0018 29.8 4.0 60 480-539 1-62 (287)
438 KOG2758 Translation initiation 28.4 6.3E+02 0.014 25.5 14.0 164 357-534 20-195 (432)
439 COG5159 RPN6 26S proteasome re 28.2 6E+02 0.013 25.2 12.6 137 409-567 9-152 (421)
440 PF08967 DUF1884: Domain of un 27.5 67 0.0014 24.6 2.6 26 600-625 8-33 (85)
441 PRK14962 DNA polymerase III su 27.4 8.2E+02 0.018 26.5 12.1 29 313-341 254-282 (472)
442 COG2909 MalT ATP-dependent tra 26.9 1.1E+03 0.023 27.6 25.6 51 248-298 470-524 (894)
443 cd08326 CARD_CASP9 Caspase act 26.8 2.6E+02 0.0057 21.8 6.1 61 257-321 20-80 (84)
444 KOG0545 Aryl-hydrocarbon recep 26.7 3.9E+02 0.0085 25.8 8.0 53 516-568 240-292 (329)
445 COG0735 Fur Fe2+/Zn2+ uptake r 26.4 3.1E+02 0.0067 24.0 7.2 41 205-245 24-64 (145)
446 PRK11639 zinc uptake transcrip 26.1 2.7E+02 0.0058 25.2 7.0 47 204-250 28-74 (169)
447 PF00244 14-3-3: 14-3-3 protei 25.8 6E+02 0.013 24.4 12.6 162 409-571 7-200 (236)
448 PRK13341 recombination factor 25.1 1.1E+03 0.024 27.2 14.4 107 231-351 192-307 (725)
449 PF07064 RIC1: RIC1; InterPro 24.8 6.7E+02 0.014 24.6 15.5 86 175-265 158-249 (258)
450 smart00544 MA3 Domain in DAP-5 24.6 3.9E+02 0.0085 21.9 7.9 23 206-228 7-29 (113)
451 COG5108 RPO41 Mitochondrial DN 24.5 7.6E+02 0.017 27.7 10.6 25 342-366 33-57 (1117)
452 COG5108 RPO41 Mitochondrial DN 24.3 3.8E+02 0.0083 29.8 8.4 72 241-312 33-113 (1117)
453 PF04090 RNA_pol_I_TF: RNA pol 24.1 5.9E+02 0.013 23.8 9.7 116 403-535 41-168 (199)
454 PF11838 ERAP1_C: ERAP1-like C 24.0 7.4E+02 0.016 24.8 18.3 25 287-311 56-82 (324)
455 KOG2063 Vacuolar assembly/sort 23.8 1.2E+03 0.027 27.4 18.5 131 203-348 506-637 (877)
456 KOG2908 26S proteasome regulat 23.4 6E+02 0.013 25.9 9.0 51 214-264 88-143 (380)
457 PRK11639 zinc uptake transcrip 23.3 2.3E+02 0.005 25.6 6.0 62 429-492 17-78 (169)
458 KOG1524 WD40 repeat-containing 23.3 3.7E+02 0.0081 28.9 7.9 60 474-536 573-632 (737)
459 PF11817 Foie-gras_1: Foie gra 23.0 2.8E+02 0.0061 26.9 7.0 18 209-226 18-35 (247)
460 KOG2581 26S proteasome regulat 22.6 9.1E+02 0.02 25.4 14.2 90 448-538 179-279 (493)
461 PRK14700 recombination factor 22.4 4.7E+02 0.01 26.2 8.2 48 305-352 126-176 (300)
462 cd08332 CARD_CASP2 Caspase act 22.3 2.9E+02 0.0064 21.8 5.7 59 50-115 23-81 (90)
463 KOG1550 Extracellular protein 22.2 1.1E+03 0.024 26.2 21.2 222 201-433 288-539 (552)
464 PF11123 DNA_Packaging_2: DNA 22.2 3.5E+02 0.0077 20.4 5.6 58 387-465 12-72 (82)
465 smart00777 Mad3_BUB1_I Mad3/BU 21.8 3.2E+02 0.007 23.3 6.1 41 524-564 81-123 (125)
466 PF11525 CopK: Copper resistan 21.8 26 0.00057 25.6 -0.3 22 685-706 8-29 (73)
467 cd00280 TRFH Telomeric Repeat 21.7 4.1E+02 0.0089 24.4 6.9 73 490-563 85-167 (200)
468 PLN03192 Voltage-dependent pot 21.6 1.2E+03 0.027 27.4 13.1 142 247-401 533-681 (823)
469 COG0735 Fur Fe2+/Zn2+ uptake r 21.5 3.9E+02 0.0085 23.4 6.9 62 427-490 10-71 (145)
470 PRK14962 DNA polymerase III su 20.9 1.1E+03 0.024 25.6 12.6 24 213-236 255-278 (472)
471 PF14427 Pput2613-deam: Pput_2 20.8 2.8E+02 0.0061 22.7 5.1 57 637-693 46-102 (118)
472 PF12968 DUF3856: Domain of Un 20.7 5.3E+02 0.011 21.9 10.1 60 475-534 56-128 (144)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 20.5 5.3E+02 0.012 21.9 9.0 42 421-462 81-123 (126)
474 PF02847 MA3: MA3 domain; Int 20.3 1.4E+02 0.003 24.6 3.8 83 205-288 6-89 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-135 Score=1173.15 Aligned_cols=691 Identities=33% Similarity=0.600 Sum_probs=678.1
Q ss_pred ChhHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHH
Q 039873 9 SPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIAR 88 (709)
Q Consensus 9 ~p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 88 (709)
.+..|+..|.. |...|+.||..||+.++++|++.+++..+.++|..+.+.|+. +|+.++|+||.+|+++|++++|+
T Consensus 167 ~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 167 YFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE---LDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred CHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC---cccchHhHHHHHHhcCCCHHHHH
Confidence 45677888865 445699999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCC
Q 039873 89 QLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVF 168 (709)
Q Consensus 89 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (709)
++|++|++||+++||+||.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|+++|..+++.|+.|
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873 169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS 248 (709)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (709)
|..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 039873 249 LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGM 328 (709)
Q Consensus 249 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (709)
.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 039873 329 EYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNA 408 (709)
Q Consensus 329 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 408 (709)
.. ++.||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~ 559 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI 559 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHH
Confidence 85 6999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 039873 409 MICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG 488 (709)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 488 (709)
||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 489 LLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 489 ~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|++
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhhhhhhcccCHHHHHH
Q 039873 569 RKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIA 648 (709)
Q Consensus 569 ~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~ 648 (709)
+|++|+||+|||++++++|.|.+||.+||+.++||..++++..+|++.||.||+..++ ++++++|+..+++||||||+|
T Consensus 720 ~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a 798 (857)
T PLN03077 720 NGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIA 798 (857)
T ss_pred cCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877 558889999999999999999
Q ss_pred hccccCCCCCcEEEEeccccccchhHHHHHHhhhcCceEEEecCCcccccccccccCCC
Q 039873 649 YALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTD 707 (709)
Q Consensus 649 ~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~ 707 (709)
||||+|+||.||||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 799 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-126 Score=1072.74 Aligned_cols=614 Identities=33% Similarity=0.617 Sum_probs=605.7
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH
Q 039873 96 QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNA 175 (709)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (709)
.++..+|+++|.+|.+.|++++|+++|+.|....++.||..||+.++.+|++.++++.|.++|..|++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45778999999999999999999999999983345889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873 176 LVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 255 (709)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 039873 256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRP 335 (709)
Q Consensus 256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 335 (709)
.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 039873 336 NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSH 415 (709)
Q Consensus 336 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 415 (709)
|..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK 495 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (709)
+|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCC
Q 039873 496 FMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEP 575 (709)
Q Consensus 496 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 575 (709)
+|++++++|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhhhhhhcccCHHHHHHhccccCC
Q 039873 576 GSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETP 655 (709)
Q Consensus 576 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 655 (709)
|+||+++++.+|.|.+||..||+.++||+.+.++..+|++.||.||+.+++|++++++|+..+++||||||+|||||+++
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccccccchhHHHHHHhhhcCceEEEecCCcccccccccccCCCCC
Q 039873 656 PTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709 (709)
Q Consensus 656 ~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~~~ 709 (709)
||.||||+||||||+|||+|+||||++++|||||||.+|||||++|+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-87 Score=772.81 Aligned_cols=668 Identities=25% Similarity=0.356 Sum_probs=596.6
Q ss_pred HHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHH
Q 039873 12 AATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLF 91 (709)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f 91 (709)
.|...+. .|...|+.|+..+|..++++|.+.+.+..|.++|..+.+.+.. +++.++|+|+++|+++|+++.|+++|
T Consensus 69 ~A~~l~~-~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 69 QALKLLE-SMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS---LGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred HHHHHHH-HHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHhCCChHHHHHHH
Confidence 4444443 3556788999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchh
Q 039873 92 DNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKY 171 (709)
Q Consensus 92 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 171 (709)
++|++||+++||++|.+|++.|++++|+++|++|. ..|+.||.+||+.++++|+..++++.++++|..+++.|+.||..
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 039873 172 VRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKD 251 (709)
Q Consensus 172 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 251 (709)
++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 039873 252 LKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYE 331 (709)
Q Consensus 252 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (709)
++.|.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 039873 332 AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMIC 411 (709)
Q Consensus 332 g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 411 (709)
|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (709)
+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|+++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999986 5999999999999999999999999999999987 699999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC-CCCchhHHHHHHHhhhcCCchhHHHHHHHHH-hC
Q 039873 492 EAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD-PNDVGTYILLSNMYAKEKRWDGVSKIRKLMK-VR 569 (709)
Q Consensus 492 ~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~ 569 (709)
+|.++|+.+ .||.++|++||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|. +.
T Consensus 542 ~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 542 YAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999999998 7999999999999999999999999999999865 3467899999999999999999999999999 57
Q ss_pred CCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhhhhhhcccCHHHH-HH
Q 039873 570 KVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLA-IA 648 (709)
Q Consensus 570 ~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la-~~ 648 (709)
|+.|+... +.- .+......++ +++..+.+++++++||..+|..-+..+..++.+- -.|+.| ..
T Consensus 620 gi~P~~~~-y~~-------lv~~l~r~G~-------~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l 683 (857)
T PLN03077 620 SITPNLKH-YAC-------VVDLLGRAGK-------LTEAYNFINKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHI 683 (857)
T ss_pred CCCCchHH-HHH-------HHHHHHhCCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence 88665421 100 0011111222 3444445556689999888765555443322110 011222 23
Q ss_pred hccccCCCCCcEEEEeccccccchhHHHHHHhhhcCceEE-------EecCCccccccccccc
Q 039873 649 YALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDII-------VRDTNRFHRFQDGCCS 704 (709)
Q Consensus 649 ~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~-------~~d~~~~h~f~~g~cs 704 (709)
+.+.+..++..+.+.+-+...|+..++.+....|..+.+- |--.+..|-|..|--|
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 4555665666655556677889999999999887666321 1224678888776544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-68 Score=605.92 Aligned_cols=502 Identities=18% Similarity=0.215 Sum_probs=467.2
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcch-----HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVS-----YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSI 140 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ 140 (709)
++...+..++..|+++|++++|+++|++|++++... ++.++.+|.+.|..++|+.+|+.|. . ||..||+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-N----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-C----CCHHHHHH
Confidence 678889999999999999999999999999876654 4566777999999999999999997 3 99999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcccHHHHHHHHHhCCC
Q 039873 141 VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP----GYDVFEYNSVLNGLIENEC 216 (709)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 216 (709)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 039873 217 FRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLK--SDIEPDVFINSAMISMYGKCGKFSNAKKVF 294 (709)
Q Consensus 217 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 294 (709)
+++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 678999999999999999999999999999
Q ss_pred HhccC----CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 039873 295 EGLET----RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE 370 (709)
Q Consensus 295 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 370 (709)
++|.+ ++.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99986 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 69999999999999999999999999999999999999999999999
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLS----KAG-------------------LLDEAEKFMRST--- 500 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~--- 500 (709)
+|++.|++++|.++|..|.+ .|+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999977 599999999999998743 333 236788888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCC
Q 039873 501 PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILH-MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEP 575 (709)
Q Consensus 501 ~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 575 (709)
++.||..+|++++.++.+.+..+.+..+++.+.. -.+++..+|.+|++.+.+. .++|..++++|...|+.|+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 7889999999999877788888888888887654 3466788999999988432 36899999999999998775
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-68 Score=604.98 Aligned_cols=456 Identities=21% Similarity=0.318 Sum_probs=436.8
Q ss_pred hhHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHH
Q 039873 10 PQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQ 89 (709)
Q Consensus 10 p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 89 (709)
+..|+..|.++....+..||..+|+.++.+|++.++++.+.++|..+.+.|+. ||+.++|.|+++|+++|+++.|++
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE---PDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHhcCCCHHHHHH
Confidence 45666777666555568899999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc
Q 039873 90 LFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC 169 (709)
Q Consensus 90 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 169 (709)
+|++|++||+++||++|.+|++.|++++|+++|++|. +.|+.||..||+.++.+|++.|+.+.++++|..+.+.|+.+|
T Consensus 180 lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 039873 170 KYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASL 249 (709)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (709)
..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 039873 250 KDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGME 329 (709)
Q Consensus 250 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (709)
|++++|.++|+.|.+.|+.||..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHH-hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC-CCChhhHH
Q 039873 330 YEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEK-SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR-YRDIITWN 407 (709)
Q Consensus 330 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~ 407 (709)
+.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|. .||..+|+
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 999999999999999999999999999999999986 6999999999999999999999999999999997 68999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP 472 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 472 (709)
+|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 999999999999999999999875 5665 56899999999999999999999999866 47753
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-65 Score=581.57 Aligned_cols=504 Identities=12% Similarity=0.162 Sum_probs=475.8
Q ss_pred CCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHH
Q 039873 27 PPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLM 106 (709)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 106 (709)
.++...|..++..|.+.|++..|.++++.|.+.|.. +++...++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv--~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL--DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456678999999999999999999999999999853 178889999999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 039873 107 TWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV 186 (709)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (709)
.+|++.|++++|+++|+.|. +.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC----CCcccHHHHHHHHHhCCCccHHHHHHHHHHh--CCCCCChhhHHHHHHHHhcCCCcHHHHHHHH
Q 039873 187 EMAKRLLDLLPG----YDVFEYNSVLNGLIENECFRGGVEVLGKMVS--GSVRWDSVTYVNAFGLSASLKDLKLGLQVHS 260 (709)
Q Consensus 187 ~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 260 (709)
++|.++|+.|.. ||.++||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999954 7999999999999999999999999999986 6899999999999999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 039873 261 QMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET----RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN 336 (709)
Q Consensus 261 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 336 (709)
.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+ ||.++|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999985 6999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHH
Q 039873 337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICG 412 (709)
Q Consensus 337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~ 412 (709)
..+|++++.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+|+++|.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 5899999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHHHHHHHHhhC
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH----L-------------------GLVQEGFYYLNHLMKQIG 469 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~ 469 (709)
|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+ .|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AG 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CC
Confidence 99999999999999999999999999999999876542 1 124679999999987 59
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873 470 IVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP---VKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD 536 (709)
Q Consensus 470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 536 (709)
+.||..+|+.++..+.+.+..+.+.++++.|+ ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998875 456789999999998433 368999999999876
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-30 Score=307.67 Aligned_cols=543 Identities=12% Similarity=0.026 Sum_probs=285.0
Q ss_pred ChhHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHH
Q 039873 9 SPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIAR 88 (709)
Q Consensus 9 ~p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 88 (709)
+...|...+....... +.+...+..+...+...|+++.|...+..+..... .+...++.+...|.+.|++++|.
T Consensus 310 ~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 310 NLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP----DDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred CHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555432 22333444555555666667777666666665443 25556666666666777777777
Q ss_pred HHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhC
Q 039873 89 QLFDNMRQ--R-NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSG 165 (709)
Q Consensus 89 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (709)
+.|+++.+ | +...|..+...+...|++++|++.|+.+. .... .+......++..+.+.|+++.|..++..+.+..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA-QLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-hhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 76666543 2 33445555556666666666666666654 2211 112233344445555566666666655555432
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHH
Q 039873 166 LVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNA 242 (709)
Q Consensus 166 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 242 (709)
+.+..++..+...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.+. .+..++..+
T Consensus 462 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 462 -PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred -CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 23445555555666666666666666655432 2333455555555555666666666665554321 233445555
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHh
Q 039873 243 FGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFE 319 (709)
Q Consensus 243 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 319 (709)
...+...|+.++|..++..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555555555555555555443 33444555555555555555555555555542 23455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873 320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 399 (709)
+|+..|+++.+.. +.+...+..+...+...|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555432 1223344445555555555555555555555432 3334455555555555555555555555554
Q ss_pred C---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHH
Q 039873 400 Y---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEH 476 (709)
Q Consensus 400 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 476 (709)
. .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 2 23344555555555555555555555555552 333344444555555555555555555555432 2233445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 554 (709)
+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ .+|+..++++++..|+++..+..++.+|...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 555555555555555555555433 111 234455555555555555 44555555555555555555555555555555
Q ss_pred CchhHHHHHHHHHhC
Q 039873 555 RWDGVSKIRKLMKVR 569 (709)
Q Consensus 555 ~~~~a~~~~~~m~~~ 569 (709)
++++|.++++++.+.
T Consensus 852 ~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 852 EADRALPLLRKAVNI 866 (899)
T ss_pred CHHHHHHHHHHHHhh
Confidence 555555555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-29 Score=299.80 Aligned_cols=543 Identities=11% Similarity=-0.008 Sum_probs=445.4
Q ss_pred CChhHHhhhchHHhhhCCCCCC-cchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHH
Q 039873 8 TSPQAATRCAPFLFKQNRAPPS-VEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISI 86 (709)
Q Consensus 8 ~~p~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~ 86 (709)
.+++.|...+....... |+ ...+..+...+...|+++.|...+..+++..+. +......+...+.+.|++++
T Consensus 275 ~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 275 KNYEDARETLQDALKSA---PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN----SHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred cCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHCCCHHH
Confidence 46778888887766543 22 223334444566789999999999998887543 66777888889999999999
Q ss_pred HHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 039873 87 ARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFK 163 (709)
Q Consensus 87 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (709)
|...++.+.. .+...|+.+...+.+.|++++|++.|+++. ... +.+...+..+...+...|+.+.|...+..+.+
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT-ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999988764 355678888899999999999999999986 322 23556677777788889999999999999888
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHH
Q 039873 164 SGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYV 240 (709)
Q Consensus 164 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 240 (709)
.... .......++..|.+.|++++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+... .+...+.
T Consensus 426 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 503 (899)
T TIGR02917 426 LDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAA 503 (899)
T ss_pred hCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHH
Confidence 7532 345566788899999999999999988764 3667899999999999999999999999887532 2345677
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCC
Q 039873 241 NAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEY 317 (709)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 317 (709)
.+...+...|++++|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|+
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 78888889999999999999998875 56778889999999999999999999998754 356778888999999999
Q ss_pred HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873 318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD 397 (709)
Q Consensus 318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 397 (709)
+++|+++++++.... +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998643 4456778888899999999999999999998765 55677788899999999999999999998
Q ss_pred cCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh
Q 039873 398 MRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL 474 (709)
Q Consensus 398 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 474 (709)
+.+ .+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|..+... .|+.
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 736 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSS 736 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCc
Confidence 763 457789999999999999999999999998864 456677888888889999999999999998653 4666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
..+..++.++.+.|++++|.+.++++ ... .+..++..+...|...|+.++|.+.++++++..|+++..+..++.+|..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 78888999999999999999987754 222 3577888888899999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 039873 553 EKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~~ 569 (709)
.|+ .+|..+++++.+.
T Consensus 817 ~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 817 LKD-PRALEYAEKALKL 832 (899)
T ss_pred cCc-HHHHHHHHHHHhh
Confidence 999 8899999988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.98 E-value=8.6e-33 Score=229.90 Aligned_cols=106 Identities=61% Similarity=1.034 Sum_probs=97.2
Q ss_pred ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhh--------hhhhcccCHHHHH
Q 039873 576 GSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQK--------EDYLNHHSEKLAI 647 (709)
Q Consensus 576 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 647 (709)
|+||+++ |.|++||.+||+. ++..++...||.|+.....|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899976 9999999999987 466677888999999999998887766 4588999999999
Q ss_pred HhccccCCCCCcEEEEecc-ccccchhHHHHHHhhhcCceEEEecCCcccccc
Q 039873 648 AYALMETPPTAPILVIKNL-RMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQ 699 (709)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~l-~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~ 699 (709)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.1e-20 Score=224.81 Aligned_cols=513 Identities=11% Similarity=-0.005 Sum_probs=358.0
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhH-HHHHHHHHHccCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhC
Q 039873 37 LKHSADSKDLKLGKVIHAHLIITTESSRNENVVL-TNSLVNLYAKCNQISIARQLFDNMRQ--R-NVVSYSSLMTWYLHN 112 (709)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 112 (709)
...+...|++++|.+.+..+++.... +... ...+.......|+.++|++.|+++.+ | +...+..+...+...
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~----~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPP----ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCC----ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 34567788899999988888875433 2221 11112222345888999999988875 3 344677777888888
Q ss_pred CChhHHHHHHHHhhhCCCC------------------C--------------CChhhH---------------------H
Q 039873 113 GFLLETLKLFKNMVSGDNL------------------E--------------PNEYIF---------------------S 139 (709)
Q Consensus 113 g~~~~A~~~~~~m~~~~g~------------------~--------------p~~~t~---------------------~ 139 (709)
|++++|+..|+++. .... . |+...+ .
T Consensus 195 g~~~eAl~~l~~~~-~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 195 GRRDEGFAVLEQMA-KSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred CCHHHHHHHHHHHh-hCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 99999999888875 2210 0 110000 0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-----ccHHHH-------
Q 039873 140 IVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDV-----FEYNSV------- 207 (709)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~~~~~l------- 207 (709)
.....+...|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+.+. ..|..+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 11123445677777777777777764 23566677777777788888888877776543211 122222
Q ss_pred -----HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873 208 -----LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG 282 (709)
Q Consensus 208 -----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 282 (709)
...+.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 2345677788888888887776532 234455666677777788888888887777654 334555666666664
Q ss_pred hcCChHHHHHHHHhccCCC------------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhc
Q 039873 283 KCGKFSNAKKVFEGLETRN------------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAG 349 (709)
Q Consensus 283 ~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~ 349 (709)
.++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 356777777777665321 123444566777889999999999998874 454 3455667778889
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC----Ch---------hhHHHHHHHHHHc
Q 039873 350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR----DI---------ITWNAMICGYSHH 416 (709)
Q Consensus 350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~---------~~~~~li~~~~~~ 416 (709)
.|+.++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999988754 344555555566677889999999999887632 11 1123456678889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
|+.++|+++++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++.+|...|++++|++.
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999872 2445556777888899999999999999998763 233467889999999999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc------hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 497 MRSTP-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV------GTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 497 ~~~~~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++... ..|+ ...+..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|.+.++....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98653 3454 66677788888999999999999999998776543 3566778999999999999999998864
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=7.5e-21 Score=226.12 Aligned_cols=520 Identities=11% Similarity=0.047 Sum_probs=281.3
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC--CCcch-H-------
Q 039873 33 TLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ--RNVVS-Y------- 102 (709)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~-~------- 102 (709)
.....+.+-..++.+.|.+.+..+....+. |+.+...+...+.+.|+.++|.+.+++..+ |+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~----~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN----NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 444556666788888888888887776543 677788888888888999999888888764 33221 1
Q ss_pred ---------HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhh-HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhH
Q 039873 103 ---------SSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYI-FSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYV 172 (709)
Q Consensus 103 ---------~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 172 (709)
-.+...+.+.|++++|+..|+... . +-+|+... ...........++.++|...++.+++.. +.+...
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l-~-~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLF-N-GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc-c-CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence 222335778888999999888886 2 23333221 1111122234578888888888888875 335667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCc------ccH-----------------HHHHHHHHhCCCccHHHHHHHHHHh
Q 039873 173 RNALVELYTKCLDVEMAKRLLDLLPGYDV------FEY-----------------NSVLNGLIENECFRGGVEVLGKMVS 229 (709)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~ 229 (709)
...+...+...|+.++|...|+++..... ..| ...+..+-.....+.|...+.++..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 77888888888888888888887643211 011 0000000011111222233322222
Q ss_pred CCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC---Hhh
Q 039873 230 GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RN---VVL 304 (709)
Q Consensus 230 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~---~~~ 304 (709)
....|+... .....++...|++++|...++..++.. +.+..++..|...|.+.|+.++|+..|++..+ |+ ...
T Consensus 264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 111121111 111223334455555555555555432 23444455555555555555555555554432 11 111
Q ss_pred HHHH------------HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh
Q 039873 305 WTAM------------VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHL 372 (709)
Q Consensus 305 ~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 372 (709)
|..+ ...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+.
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~ 419 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNT 419 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 2111 123344555555555555554431 1122233334444455555555555555554432 2222
Q ss_pred hHHh------------------------------------------HHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHH
Q 039873 373 IVGN------------------------------------------ALINMYAKGGNIEAANKVFSDMRY--R-DIITWN 407 (709)
Q Consensus 373 ~~~~------------------------------------------~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~ 407 (709)
..+. .+...|...|++++|.+.|++..+ | +...+.
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2233 334445555666666666665542 2 333455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh---------HHH
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL---------EHY 477 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~ 477 (709)
.+...|.+.|++++|...|+++.+. .|+ ...+..+...+...++.++|...++.+... ...++. ..+
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHH
Confidence 5555666666666666666665542 232 222222223344555666666655543210 111110 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCch
Q 039873 478 TCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWD 557 (709)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 557 (709)
..+.+.+...|+.++|.++++..+ ++...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|+++
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 234455666777777777776433 334555667777777888888888888888888888788888888888888888
Q ss_pred hHHHHHHHHHh
Q 039873 558 GVSKIRKLMKV 568 (709)
Q Consensus 558 ~a~~~~~~m~~ 568 (709)
+|.+.++...+
T Consensus 655 eA~~~l~~ll~ 665 (1157)
T PRK11447 655 AARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHhc
Confidence 88888876654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=6.4e-18 Score=192.10 Aligned_cols=533 Identities=9% Similarity=-0.045 Sum_probs=341.7
Q ss_pred hHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHH
Q 039873 11 QAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQL 90 (709)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 90 (709)
+.|+..+.......+ -+...+..|.+.+...|+.++|.......++..+. |...+..+.. .++.++|..+
T Consensus 61 ~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~----n~~~~~~La~----i~~~~kA~~~ 130 (987)
T PRK09782 61 ATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG----DARLERSLAA----IPVEVKSVTT 130 (987)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc----cHHHHHHHHH----hccChhHHHH
Confidence 344444444444321 12344555555666666666666666666554322 4444443311 1556666666
Q ss_pred HhcCCC--CC-cchHHHHHHH--------HHhCCChhHHHHHHHHhhhCCCCCCChhhHHHH-HHHHhcCCCchHHHHHH
Q 039873 91 FDNMRQ--RN-VVSYSSLMTW--------YLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIV-LSSCSRSGRGAEGRQCH 158 (709)
Q Consensus 91 f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~ 158 (709)
++++.. |+ ...+..+... |.+.+...++++ .. .....|+..+.... .+.+...++++.+..++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 666542 22 2222222222 444433333333 22 22234445545555 77788888888899999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCC-CCh
Q 039873 159 GYVFKSGLVFCKYVRNALVELYTK-CLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVR-WDS 236 (709)
Q Consensus 159 ~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~ 236 (709)
..+.+.+.. +......|-.+|.. .++ +.|..+++.....|...+..+...|.+.|+.++|..+++++...-.. |+.
T Consensus 206 ~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 988888743 34446666667777 466 88888877655568888999999999999999999999988653222 322
Q ss_pred hhHHHH------------------------------HHHHhcCCCcHHHHHHH---------------------------
Q 039873 237 VTYVNA------------------------------FGLSASLKDLKLGLQVH--------------------------- 259 (709)
Q Consensus 237 ~t~~~l------------------------------l~~~~~~~~~~~a~~~~--------------------------- 259 (709)
.++.-+ +..+.+.++++.+.++.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 222222 22223333333333321
Q ss_pred --HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC-C-----CHhhHHHHHHHHHHcCC---HhHHHHH----
Q 039873 260 --SQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET-R-----NVVLWTAMVAACFQNEY---FEEALNL---- 324 (709)
Q Consensus 260 --~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~---- 324 (709)
..+.+.. +-+....--+.-...+.|+.++|.++|++.-. + +...-+-++..|.+++. ..++..+
T Consensus 364 ~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 364 LARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 1111110 11222222333344567888888888887654 1 23344466777777665 3333333
Q ss_pred --------HH----------HHHh-CCCCCC---ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873 325 --------FC----------GMEY-EAIRPN---EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY 382 (709)
Q Consensus 325 --------~~----------~m~~-~g~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 382 (709)
.. .... .+..|+ ...+..+..++.. +..++|...+....... |+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHH
Confidence 11 1111 112233 3334444444444 78888888777776653 4544444445555
Q ss_pred HhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHH
Q 039873 383 AKGGNIEAANKVFSDMRY--RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFY 459 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~ 459 (709)
...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+.......|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 789999999999997763 455567778888999999999999999998853 5443 33344445556799999999
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
.++...+ ..|+...+..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.++|+..++++++.+|
T Consensus 598 ~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999865 4577888999999999999999999998754 45666 67778888899999999999999999999999
Q ss_pred CCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 538 NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+++..+..++.+|...|++++|...+++..+.
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998764
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-19 Score=180.20 Aligned_cols=449 Identities=12% Similarity=0.039 Sum_probs=353.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039873 103 SSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTK 182 (709)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 182 (709)
..|..-..+.|++.+|.+.-...- .. -+.+..+...+-..+.+..+++...+--...++.. ..-..+|+.+.+.+-.
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~-~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVG-QE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhh-cc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 344455667889988887655443 11 11222222223333444445554444333333332 2345678889999999
Q ss_pred cCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhH-HHHHHHHhcCCCcHHHHHH
Q 039873 183 CLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTY-VNAFGLSASLKDLKLGLQV 258 (709)
Q Consensus 183 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~ 258 (709)
.|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+.. +.+-......|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998765 3567899999999999999999999999876 46765543 3333444567899999998
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 039873 259 HSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRN---VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRP 335 (709)
Q Consensus 259 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 335 (709)
+-..++.. +.-..+|+.|...+-..|++..|+.-|++...-| ...|-.|...|...+.+++|+..|.+.... .|
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 88888764 3345688999999999999999999999987644 467888889999999999999999887754 56
Q ss_pred Cc-cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHH
Q 039873 336 NE-FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMIC 411 (709)
Q Consensus 336 d~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 411 (709)
+. +.+..+...|...|.++.|...+++.++.. +.-...|+.|.+++-..|++.+|.+.|.+... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 54 567777777889999999999999998864 44567899999999999999999999998763 3 4568899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCC
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGL 489 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 489 (709)
.|...|..++|..+|....+ +.|.- ..++.|...+-+.|++++|+..+++.+ .+.|+ ...|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999988 77874 478899999999999999999999874 57787 5689999999999999
Q ss_pred HHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873 490 LDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 490 ~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 565 (709)
.++|...+. .+.+.|. ....+.|.+.+...|+..+|++.++..++++|+.+.+|..++..+.-..+|.+--+.+++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 999999876 4567777 778899999999999999999999999999999999999999888877788774433333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=3.7e-19 Score=179.17 Aligned_cols=417 Identities=12% Similarity=0.105 Sum_probs=333.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCC
Q 039873 140 IVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENEC 216 (709)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 216 (709)
.+..-..+.|++++|++--..+-+.. +.+....-.+-..|.++.+.+....--..... .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888877544443332 12222222233556666666544332222222 234578889999999999
Q ss_pred ccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCChHHHHHHH
Q 039873 217 FRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF-INSAMISMYGKCGKFSNAKKVF 294 (709)
Q Consensus 217 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~ 294 (709)
.++|+.+++.|++. +|+ ...|..+..++...|+.+.|.+.+.+.++. .|+.. +.+.+....-..|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999985 554 558999999999999999999999998876 45543 4445566666789999999999
Q ss_pred HhccCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc-cchHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 039873 295 EGLETRN---VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNE-FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE 370 (709)
Q Consensus 295 ~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 370 (709)
.+..+.+ .+.|+.|...+-.+|+...|+.-|++... +.|+. ..|..+-..+...+.++.|...+..+.... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 8866533 47899999999999999999999999875 35653 457777778888888888888887776643 44
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMRY--RD-IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH-VTFVGVLS 446 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~ 446 (709)
...++..|...|-..|.++-|.+.|++..+ |+ ...||.|..++-..|++.+|...|.+... +.|+. .+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 567788888899999999999999999874 44 46999999999999999999999999988 67774 48899999
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCch
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYG 523 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~ 523 (709)
.+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|...+++ +.++|+ ..+++.+...|...|+..
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999874 45666 45788999999999999999999874 577888 788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.|.+.+.+++.++|.-+.++..|+.+|-.+|+..+|+.-++....-
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988763
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=2.9e-16 Score=178.68 Aligned_cols=516 Identities=9% Similarity=-0.035 Sum_probs=366.8
Q ss_pred CcchHHHH-HHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc-cCChHHHHHHHhcCCCCCcchHHHHH
Q 039873 29 SVEDTLKL-LKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAK-CNQISIARQLFDNMRQRNVVSYSSLM 106 (709)
Q Consensus 29 ~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li 106 (709)
++.+.... .+.+...++++.+..++..+.+.+.. +......|-.+|.. .++ +.|..++....+.|...+..+.
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl----~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala 254 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL----SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYA 254 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHH
Confidence 34444444 77788888999999999999888754 45556667777877 466 8888887765556788888999
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCch-HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcC
Q 039873 107 TWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGA-EGRQCHGYVFKSGLVFC-KYVRNALVELYTKCL 184 (709)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g 184 (709)
..|.+.|+.++|..+++++....--.|+..++..++. +.+... .+..-+.. + +.++ ....-.++..+.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~ 327 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEG 327 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988622222366665555543 333322 11111111 0 1111 123344578899999
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHH--HHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHH
Q 039873 185 DVEMAKRLLDLLPGYDVFEYNSVLNG--LIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQM 262 (709)
Q Consensus 185 ~~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 262 (709)
.++.|+++.+. ...+.. ..+.. ....+...++...++.|.+... -+......+--.....|+.++|.+++...
T Consensus 328 ~~~~~~~~~~~-~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~ 402 (987)
T PRK09782 328 QYDAAQKLLAT-LPANEM---LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQR 402 (987)
T ss_pred HHHHHHHHhcC-CCcchH---HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 99988887552 222332 22222 2234667777777777766421 13333333333456788999999999988
Q ss_pred HHc-C-CCCchHHHHHHHHHHHhcCC---hHHHHHH-------------------------HHhccC---C--CHhhHHH
Q 039873 263 LKS-D-IEPDVFINSAMISMYGKCGK---FSNAKKV-------------------------FEGLET---R--NVVLWTA 307 (709)
Q Consensus 263 ~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------~~~m~~---~--~~~~~~~ 307 (709)
... + -..+....+-|+..|.+.+. ..++..+ +..... . +...|..
T Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~ 482 (987)
T PRK09782 403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR 482 (987)
T ss_pred cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence 763 1 22345566688888888876 2333222 111111 2 5667788
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873 308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387 (709)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 387 (709)
+..++.. ++.++|+..|.+.... .|+......+..++...|+++.|...+..+... +|+...+..+...+.+.|+
T Consensus 483 LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 483 LAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence 8877776 8899999988887764 366554444445556899999999999987654 4444556677888999999
Q ss_pred HHHHHHHHhhcCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873 388 IEAANKVFSDMRYRDIITWNAM---ICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464 (709)
Q Consensus 388 ~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 464 (709)
.++|...|++..+.+...++.. ...+...|++++|+..|++..+ +.|+...+..+..++.+.|++++|...++..
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998875443333333 3334455999999999999998 5788888999999999999999999999998
Q ss_pred HHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 465 MKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 465 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
.. ..| +...++.+...+...|++++|++.+++. ...|+ ...+..+..++...|++++|+..++++++++|++..
T Consensus 636 L~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 636 LE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 65 344 4567888889999999999999998854 44565 788999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 542 TYILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 542 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
+.....++.....+++.+.+-+++.-..++
T Consensus 713 i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 713 ITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999988887765544
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=3e-18 Score=181.80 Aligned_cols=306 Identities=12% Similarity=0.078 Sum_probs=178.2
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 039873 107 TWYLHNGFLLETLKLFKNMVSGDNLEP-NEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC---KYVRNALVELYTK 182 (709)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~ 182 (709)
..+...|++++|+..|.++. .. .| +..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEML-KV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHhcCChHHHHHHHHHHH-hc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776 32 23 344566666666677777777777766665432211 1344555555555
Q ss_pred cCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHH
Q 039873 183 CLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVH 259 (709)
Q Consensus 183 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 259 (709)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 5555555555555543 2334455555555555555555555555544322211100
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 039873 260 SQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN 336 (709)
Q Consensus 260 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 336 (709)
....+..+...|.+.|++++|...|+++.+ .+...+..+...|.+.|++++|+++|+++...+....
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 011233455556666666666666666543 2344566666667777777777777777665422111
Q ss_pred ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHH
Q 039873 337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDIITWNAMICGYS 414 (709)
Q Consensus 337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~ 414 (709)
..++..+..++...|++++|...+..+.+.. |+..++..++..|.+.|++++|..+|+++. .|+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 2345555666666666666666666665542 444455667777777788888888777655 367777777776665
Q ss_pred H---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccH
Q 039873 415 H---HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLV 454 (709)
Q Consensus 415 ~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 454 (709)
. +|+.++++.+|++|.+.+++|+.. ..|.+.|..
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 4 457778888888888777666655 346666544
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=5.1e-18 Score=180.01 Aligned_cols=288 Identities=13% Similarity=0.036 Sum_probs=181.3
Q ss_pred HhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---ccchHHHHHHHhccCChhH
Q 039873 282 GKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN---EFTFAVMLNSAAGLSALRH 355 (709)
Q Consensus 282 ~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~ 355 (709)
...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444555555555554421 233444455555555555555555555544321111 1233444444555555555
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC--------hhhHHHHHHHHHHcCChHHHHHHHH
Q 039873 356 GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRD--------IITWNAMICGYSHHGLGREALTLFQ 427 (709)
Q Consensus 356 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~ 427 (709)
|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554432 3344556666666666666666666666654211 1134556667777788888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 039873 428 NMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG--LEHYTCIVGLLSKAGLLDEAEKFMRST-PVK 503 (709)
Q Consensus 428 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 503 (709)
++.+. .|+ ..++..+...+.+.|++++|.++++.+.+. .|+ ...++.++.+|.+.|++++|.+.++++ ...
T Consensus 205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87763 343 446666667777888888888888877653 233 345677888888888888888887754 335
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh---cCCchhHHHHHHHHHhCCCccCCc
Q 039873 504 WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK---EKRWDGVSKIRKLMKVRKVKKEPG 576 (709)
Q Consensus 504 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 576 (709)
|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..+++.|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6766667778888888888999998888888888764 56666665543 558889999999998888888885
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.6e-16 Score=177.57 Aligned_cols=249 Identities=12% Similarity=0.007 Sum_probs=190.1
Q ss_pred cCCHhHHHHHHHHHHhCC-CCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH
Q 039873 315 NEYFEEALNLFCGMEYEA-IRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN 392 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~g-~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 392 (709)
.+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888877654 2333 2345555556667788888888888877653 334556777888888889999999
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Q 039873 393 KVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI 468 (709)
Q Consensus 393 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 468 (709)
..|++..+ .+...|..+...|...|++++|+..|++... +.|+ ...+..+...+.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 98887653 3567888888899999999999999999888 4564 456777778888899999999999988653
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCH-H-------HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 469 GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWDV-V-------AWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
.+.+...++.+..+|...|++++|.+.|++ ..+.|+. . .++..+..+...|++++|+++++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 233466888899999999999999998875 3333431 1 12222223445699999999999999999999
Q ss_pred chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 540 VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...+..++.+|...|++++|.+.+++..+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88999999999999999999999999875
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=8.8e-15 Score=166.68 Aligned_cols=389 Identities=11% Similarity=-0.003 Sum_probs=202.6
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhCCCccHH
Q 039873 144 SCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP---GYDVFEYNSVLNGLIENECFRGG 220 (709)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 220 (709)
.....|+.++|.+++....... ..+...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3344455555555554444321 2233345555555555555555555555532 22344455566666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 039873 221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR 300 (709)
Q Consensus 221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 300 (709)
+..+++..+. .|+...+..+..++...|+.++|...++.+++.. +.+..++..+..++.+.|..+.|...++....
T Consensus 103 ~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 103 LVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 6666666654 2322225555556666677777777776666653 33455555666677777777777777776654
Q ss_pred CHh--------hHHHHHHHH-----HHcCCH---hHHHHHHHHHHhC-CCCCCcc-chHH----HHHHHhccCChhHHHH
Q 039873 301 NVV--------LWTAMVAAC-----FQNEYF---EEALNLFCGMEYE-AIRPNEF-TFAV----MLNSAAGLSALRHGDL 358 (709)
Q Consensus 301 ~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~pd~~-t~~~----ll~~~~~~~~~~~a~~ 358 (709)
++. ....++..+ ...+++ ++|++.++.+.+. ...|+.. .+.. .+.++...++.++|..
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 211 111111111 112223 6677777777643 2223221 1111 1233345566666776
Q ss_pred HHHHHHHhCCC-CChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873 359 LHAHIEKSGFK-EHLIVGNALINMYAKGGNIEAANKVFSDMRYRD-------IITWNAMICGYSHHGLGREALTLFQNML 430 (709)
Q Consensus 359 i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (709)
.++.+.+.+-+ |+ .....+...|...|++++|...|+++...+ ...+..+..++.+.|++++|+++++++.
T Consensus 259 ~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 66666665421 11 111224556666677777777666654221 1234445556666677777777776666
Q ss_pred HCC-----------CCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 431 AAE-----------ERPNH---VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 431 ~~g-----------~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
... -.|+. ..+..+...+...|++++|.+.++.+... .+.+...+..+..++.+.|++++|++.
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 531 01221 12233444555556666666666665442 222344555566666666666666666
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 497 MRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 497 ~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
+++. ...|| ...+..+.......|++++|+.+++++++..|+++
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 5532 23444 34444444455555666666666666666666554
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2e-15 Score=168.23 Aligned_cols=350 Identities=12% Similarity=-0.011 Sum_probs=269.7
Q ss_pred hcCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873 182 KCLDVEMAKRLLDLLPGY------DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 182 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 255 (709)
+..+++.-.-+|..-++. +......++..+.+.|++++|+.+++..+.....+.. .+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 444555555555554442 2334455677888999999999999999886544433 344444566679999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873 256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA 332 (709)
Q Consensus 256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 332 (709)
.+.++.+++.. +.+...+..+...|.+.|+.++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998875 55677888889999999999999999998764 356788889999999999999999999887643
Q ss_pred CCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHH
Q 039873 333 IRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAM 409 (709)
Q Consensus 333 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~l 409 (709)
|+.......+..+...|++++|...+..+.+..-.++......+...+.+.|+.++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333322222344778899999999999887764334444555667788999999999999998763 356788889
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHH
Q 039873 410 ICGYSHHGLGRE----ALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGL 483 (709)
Q Consensus 410 i~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 483 (709)
...|.+.|++++ |+..|++..+ +.|+ ...+..+...+...|++++|...++...+. .|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 8999999988 4565 457888888999999999999999998763 344 4567778899
Q ss_pred HHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 484 LSKAGLLDEAEKFMRSTP-VKWDVVAWH-TLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~-~~pd~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
|.+.|++++|.+.++++. ..|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999988652 456654443 345678899999999999999999998753
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=4.9e-15 Score=165.77 Aligned_cols=437 Identities=9% Similarity=-0.045 Sum_probs=295.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039873 102 YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYT 181 (709)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (709)
+...-..+.+.|++++|+..|++.. . ..|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al-~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-E--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4455667888899999999999877 2 56777888888888889999999999999888864 234567788888999
Q ss_pred hcCChHHHHHHHhhCCCCC---cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873 182 KCLDVEMAKRLLDLLPGYD---VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQV 258 (709)
Q Consensus 182 ~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 258 (709)
..|++++|..-|......+ ......++.-+.. ..+........+.. .++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999988776543211 1111111111111 12222222222221 111111111111 1111111111111
Q ss_pred HHHHHHcCCCCchHHHHHHHHHH------HhcCChHHHHHHHHhccCC------CHhhHHHHHHHHHHcCCHhHHHHHHH
Q 039873 259 HSQMLKSDIEPDVFINSAMISMY------GKCGKFSNAKKVFEGLETR------NVVLWTAMVAACFQNEYFEEALNLFC 326 (709)
Q Consensus 259 ~~~~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (709)
+....+ ..++ ....++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|+
T Consensus 280 ~~~~~~--~~~~--~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 280 LEDSNE--LDEE--TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhcccc--cccc--cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111 1111 111111111 2346788999999887642 34678888888999999999999999
Q ss_pred HHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CC
Q 039873 327 GMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RD 402 (709)
Q Consensus 327 ~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~ 402 (709)
+..+. .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 98864 454 3467777778889999999999999998875 55678889999999999999999999998763 35
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-------
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL------- 474 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------- 474 (709)
...|..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...|+..... .|+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccH
Confidence 667888899999999999999999999874 454 668888888999999999999999998652 3321
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 475 -EHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 475 -~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
..++.....+...|++++|.+++++ +.+.|+ ...+..+...+...|++++|...++++.++.+.....+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~-------- 579 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV-------- 579 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------
Confidence 1122233344557999999999876 345565 56788899999999999999999999999876543322
Q ss_pred hcCCchhHHHHHHHHHh
Q 039873 552 KEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 552 ~~g~~~~a~~~~~~m~~ 568 (709)
....|.++.++..+..+
T Consensus 580 ~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 580 QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22345566666555443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=5.5e-15 Score=168.36 Aligned_cols=392 Identities=8% Similarity=-0.017 Sum_probs=296.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-hhhHHHHHH
Q 039873 169 CKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWD-SVTYVNAFG 244 (709)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 244 (709)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|+++|++..+. .|+ ......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344445556677889999999999998764 24445899999999999999999999998875 444 455667777
Q ss_pred HHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHH
Q 039873 245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEA 321 (709)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 321 (709)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ .+...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8889999999999999999874 55566 88899999999999999999999875 3566777788888899999999
Q ss_pred HHHHHHHHhCCCCCCcc------chHHHHHHHh-----ccCCh---hHHHHHHHHHHHh-CCCCChh-HH-hH---HHhH
Q 039873 322 LNLFCGMEYEAIRPNEF------TFAVMLNSAA-----GLSAL---RHGDLLHAHIEKS-GFKEHLI-VG-NA---LINM 381 (709)
Q Consensus 322 ~~~~~~m~~~g~~pd~~------t~~~ll~~~~-----~~~~~---~~a~~i~~~~~~~-g~~~~~~-~~-~~---li~~ 381 (709)
++.+++... .|+.. .....+.... ..+.+ +.|.+.++.+.+. .-.|+.. .+ .. .+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999876653 33310 1111222211 11223 6677777777754 2223221 11 11 1234
Q ss_pred HHhcCCHHHHHHHHhhcCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccc
Q 039873 382 YAKGGNIEAANKVFSDMRYRD---II-TWNAMICGYSHHGLGREALTLFQNMLAAEERPN-----HVTFVGVLSACGHLG 452 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g 452 (709)
+...|++++|...|+++.+.+ +. .-..+...|...|++++|+..|+++... .|. ......+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcc
Confidence 457799999999999988532 11 1122567899999999999999998764 332 234566677889999
Q ss_pred cHHHHHHHHHHHHHhhC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 039873 453 LVQEGFYYLNHLMKQIG----------IVPG---LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASR 517 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~ 517 (709)
++++|.++++.+..... -.|+ ...+..+..++...|++++|++.++++ ...|+ ...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999876321 1123 234567888999999999999999864 23344 788899999999
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
..|+++.|++.++++++++|++...+..++..+...|+|++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999764
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.2e-14 Score=151.66 Aligned_cols=548 Identities=13% Similarity=0.028 Sum_probs=381.6
Q ss_pred CCChhHHhhhchHHhhhCCCCCCcchHHHHHHHhc--CCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCCh
Q 039873 7 PTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSA--DSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQI 84 (709)
Q Consensus 7 ~~~p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~ 84 (709)
+.+.+.|...|....+++ +++. ...|.++|. ..+++..+..++..++...+..+ +|+.+. +-..+.++|+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIg--ig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIG--IGHCFWKLGMS 215 (1018)
T ss_pred CccHHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccch--hhhHHHhccch
Confidence 344566777777777654 2333 333445544 67899999999999877654411 455443 33567799999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHH------hCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHH
Q 039873 85 SIARQLFDNMRQRNVVSYSSLMTWYL------HNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCH 158 (709)
Q Consensus 85 ~~A~~~f~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 158 (709)
+.|+..|.+..+-|...-++++.... ....+..++.++...-...+ -|+...+.|-.-+.-.+++..+..+.
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 99999999998766655555543321 22345567777666542222 35667788888888999999999999
Q ss_pred HHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--C--cccHHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 039873 159 GYVFKSGLVFC--KYVRNALVELYTKCLDVEMAKRLLDLLPGY--D--VFEYNSVLNGLIENECFRGGVEVLGKMVSGSV 232 (709)
Q Consensus 159 ~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 232 (709)
..+++.-.... ...|--+..+|-..|+++.|...|-..... | +..+--+...|.+.|+.+.+...|+...+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-- 371 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-- 371 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--
Confidence 88887653211 234666778999999999999999765542 2 445667889999999999999999999875
Q ss_pred CCC-hhhHHHHHHHHhcCC----CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh------HHHHHHHHh-ccCC
Q 039873 233 RWD-SVTYVNAFGLSASLK----DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKF------SNAKKVFEG-LETR 300 (709)
Q Consensus 233 ~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~------~~A~~~~~~-m~~~ 300 (709)
.|| ..|...+...|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+ ..|..++.. +...
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 444 446666666666664 4556666666666553 56777888887777655433 333333322 2234
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCcc-----ch-HHHHHHHhccCChhHHHHHHHHHHHhCCCCC
Q 039873 301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYE---AIRPNEF-----TF-AVMLNSAAGLSALRHGDLLHAHIEKSGFKEH 371 (709)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~-----t~-~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 371 (709)
.+...|.+..-+...|++++|...|.+.... ...+|.. |. -.+....-..++.+.|.+++..+++.. +.-
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~Y 529 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGY 529 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chh
Confidence 6678899999999999999999999988654 2334442 11 223334456678999999999998864 222
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPNHVTFVGVLSA 447 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a 447 (709)
+..|-.|..+--..+...+|...+..+. ..|+..|.-+...|.....+..|.+-|+.....- ..+|..+..+|.+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 2223333323333456778888888766 4577788888888888888888888777665432 34677777777775
Q ss_pred Hhc------------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 039873 448 CGH------------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLL 513 (709)
Q Consensus 448 ~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll 513 (709)
|.. .+..++|++.|.++.+ ..+.+...-|-+.-.++..|++.+|..+|.+.. ...+..+|-.+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 532 3456788888887765 344566777888888999999999999998652 122456788899
Q ss_pred HHHHhcCCchHHHHHHHHHHhcC--CCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 514 NASRVHQNYGFGRRIAEYILHMD--PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
..|...|++..|+++|+..++.. -+++.....|+.++.+.|+|.+|.+........
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999987643 456778889999999999999999988777654
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=1.5e-14 Score=161.34 Aligned_cols=345 Identities=10% Similarity=-0.039 Sum_probs=220.7
Q ss_pred HccCChHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCch
Q 039873 79 AKCNQISIARQLFDNMRQR------NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGA 152 (709)
Q Consensus 79 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~ 152 (709)
.|..+++.---.|..-++. +..-.-.++..+.+.|++++|+.+++... ..... +...+..++.++...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l-~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV-LTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH-HhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3556666666666655531 12223345667788888889988888876 33222 3444555556666788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHh
Q 039873 153 EGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVS 229 (709)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 229 (709)
.|...++.+++.. +.+...+..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|...++++..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 8888888888774 23455677777788888888888888877654 3455677778888888888888888887765
Q ss_pred CCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHH
Q 039873 230 GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWT 306 (709)
Q Consensus 230 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~ 306 (709)
....+.. .+.. +..+...|++++|...++.+++....++......+...+.+.|+.++|...|++... .+...+.
T Consensus 173 ~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4322222 2222 234566778888887777776654333344445556677777777777777777653 2456667
Q ss_pred HHHHHHHHcCCHhH----HHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873 307 AMVAACFQNEYFEE----ALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM 381 (709)
Q Consensus 307 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 381 (709)
.+...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++.+.+.. +.+..+...+...
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 77777777777765 67777776653 343 3455556666666777777777777666653 3344555566666
Q ss_pred HHhcCCHHHHHHHHhhcC--CCChhh-HHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 382 YAKGGNIEAANKVFSDMR--YRDIIT-WNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
|.+.|++++|...|+++. .|+... +..+..++...|+.++|++.|++..+
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777776655 233222 23344556666777777777776665
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.6e-13 Score=153.31 Aligned_cols=435 Identities=9% Similarity=0.023 Sum_probs=267.5
Q ss_pred HHHccCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhH---HHHHHHHhcCCC
Q 039873 77 LYAKCNQISIARQLFDNMRQ--RNVV-SYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIF---SIVLSSCSRSGR 150 (709)
Q Consensus 77 ~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~---~~ll~~~~~~~~ 150 (709)
...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCC
Confidence 45677888888888877764 3321 23367777777788888888877764 3322222 222345666677
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh--CCCccHHHHHHHHHH
Q 039873 151 GAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIE--NECFRGGVEVLGKMV 228 (709)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 228 (709)
++.|.++++.+++.... +..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888877776533 345555667777777777777777777766444333333334443 344444777777776
Q ss_pred hCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHH
Q 039873 229 SGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTA 307 (709)
Q Consensus 229 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 307 (709)
+. .|+ ...+.....+..+.|-...|.++... .|+.++-...... +.+.|.+..+.-..++
T Consensus 197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~------ 257 (822)
T PRK14574 197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPT------ 257 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccc------
Confidence 64 233 33445555566666665555544433 1222111111100 0011111111100000
Q ss_pred HHHHHHHcCC---HhHHHHHHHHHHh-CCCCCCccc-h----HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHH
Q 039873 308 MVAACFQNEY---FEEALNLFCGMEY-EAIRPNEFT-F----AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNAL 378 (709)
Q Consensus 308 li~~~~~~g~---~~~A~~~~~~m~~-~g~~pd~~t-~----~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 378 (709)
-...++ .+.|+.-++.+.. .+-.|.... | .-.+-++...++..++...++.+...+.+....+-.++
T Consensus 258 ----~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 258 ----RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000111 2344555555443 222232222 1 12344666777788888888888877766666777788
Q ss_pred HhHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCC
Q 039873 379 INMYAKGGNIEAANKVFSDMRYR---------DIITWNAMICGYSHHGLGREALTLFQNMLAAE-------------ERP 436 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p 436 (709)
.++|...+++++|..+|..+... +......|.-+|...+++++|..+++++...- ..|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 88888888888888888876431 22334667888888888888888888887731 112
Q ss_pred CHHH-HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 039873 437 NHVT-FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLL 513 (709)
Q Consensus 437 d~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll 513 (709)
|-.. +..+...+...|++.+|.+.++.+... -+-|......+.+++...|++.+|++.++.. .+.|+ ..+.....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 3332 334456678889999999999998653 3456778889999999999999999998754 34566 55566677
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873 514 NASRVHQNYGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 542 (709)
.+....+++++|..+.+.+.+..|++..+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 77788899999999999999999988643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=3.5e-13 Score=150.60 Aligned_cols=431 Identities=9% Similarity=-0.010 Sum_probs=273.7
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 039873 109 YLHNGFLLETLKLFKNMVSGDNLEPNE--YIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV 186 (709)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (709)
..+.|+++.|++.|++..+ ..|+. ..+ .++..+...|+.++|..+++..+.. -........++...|...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 4567777777777777652 33443 123 5566666667777777776666611 111222233334566666777
Q ss_pred HHHHHHHhhCCCC---CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039873 187 EMAKRLLDLLPGY---DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQML 263 (709)
Q Consensus 187 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (709)
++|..+|+++.+. |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 7777777766542 3344555666666777777777777776553 3444444333333333444444666666666
Q ss_pred HcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH
Q 039873 264 KSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR-NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV 342 (709)
Q Consensus 264 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 342 (709)
+.. +.+...+..++....+.|-...|.++..+-+.- +...+.-+ +.+.|.+.. +.+..++..
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~v----r~a~~~~~~---- 259 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQV----RMAVLPTRS---- 259 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHH----hhccccccc----
Confidence 664 445566666666666667666666666554421 11111100 011111111 111111110
Q ss_pred HHHHHhccCC---hhHHHHHHHHHHHh-CC-CCChhHH-h---HHHhHHHhcCCHHHHHHHHhhcCCCC----hhhHHHH
Q 039873 343 MLNSAAGLSA---LRHGDLLHAHIEKS-GF-KEHLIVG-N---ALINMYAKGGNIEAANKVFSDMRYRD----IITWNAM 409 (709)
Q Consensus 343 ll~~~~~~~~---~~~a~~i~~~~~~~-g~-~~~~~~~-~---~li~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~l 409 (709)
...+ .+.+..-++.+... +- ++....+ . -.+-++.+.|++.++.+.|+.+.... ..+--++
T Consensus 260 ------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 ------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0112 23344444444431 21 2222222 2 23446778999999999999998432 2355678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC----------CCC-
Q 039873 410 ICGYSHHGLGREALTLFQNMLAAE-----ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI----------VPG- 473 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p~- 473 (709)
.++|...+++++|+.+|+++.... ..++......|.-|+...+++++|..+++.+.+.... .|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 899999999999999999997643 1223334578889999999999999999998763220 122
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 474 --LEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 474 --~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
...+..++..+.-.|++.+|++.++++- ..| |...+..+...+...|++..|++.++.+..++|++..+...++..
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 2345567888999999999999998762 234 588889999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHhC
Q 039873 550 YAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 550 ~~~~g~~~~a~~~~~~m~~~ 569 (709)
+...|+|.+|.++.+...+.
T Consensus 494 al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhh
Confidence 99999999999988777543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6.8e-13 Score=141.74 Aligned_cols=548 Identities=13% Similarity=0.031 Sum_probs=363.7
Q ss_pred hhHHhhhchHHhhhC-CCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccC---ChH
Q 039873 10 PQAATRCAPFLFKQN-RAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCN---QIS 85 (709)
Q Consensus 10 p~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g---~~~ 85 (709)
.-.|+.+|....... ...||+..- .-..+.+.++.+.|+.-|..+++..+. ++.++-.|--+-.... .+.
T Consensus 180 Y~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~----~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 180 YRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPT----CVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred HHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChh----hHHHHHHHHHHHHHccchHHHH
Confidence 345566665544433 345555331 113335678888888888888875432 2222222222222222 334
Q ss_pred HHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CChhhHHHHHHHHhcCCCchHHHHHHHHH
Q 039873 86 IARQLFDNMR---QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLE-PNEYIFSIVLSSCSRSGRGAEGRQCHGYV 161 (709)
Q Consensus 86 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (709)
.+..++...- ..|++..|.|-+-|.-.|++..++.+...+....-.. .-...|-.+.+++-..|+++.|...+...
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444444332 2577888889999999999999999988886211111 12345778888899999999999999888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCC----CccHHHHHHHHHHhCCCCC
Q 039873 162 FKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY---DVFEYNSVLNGLIENE----CFRGGVEVLGKMVSGSVRW 234 (709)
Q Consensus 162 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p 234 (709)
.+.....-+..+-.|..+|.+.|+++.|...|+.+... +..+.-.+...|+..+ ..+.|..++.+..+.- .-
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 77643322344556789999999999999999987653 3344445555566554 3456666666665542 23
Q ss_pred ChhhHHHHHHHHhcCCCcHHHHHHHHH----HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CH-
Q 039873 235 DSVTYVNAFGLSASLKDLKLGLQVHSQ----MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR-------NV- 302 (709)
Q Consensus 235 ~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~- 302 (709)
|...|..+-..+-. ++......++.. +...+-.+...+.|.+...+...|+++.|...|++.... |.
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 45566666555544 333333544443 345566678889999999999999999999999876432 22
Q ss_pred -----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccch-HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHh
Q 039873 303 -----VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTF-AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGN 376 (709)
Q Consensus 303 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 376 (709)
.+--.+...+-..++++.|.+.|..+.+. .|.-++- .-++......+...+|...+..+...+ ..++.+.+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 12223455566678899999999998875 3554332 222222233466777888887777654 55667777
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHH------------HcCChHHHHHHHHHHHHCCCCCCHH
Q 039873 377 ALINMYAKGGNIEAANKVFSDMR-----YRDIITWNAMICGYS------------HHGLGREALTLFQNMLAAEERPNHV 439 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~g~~pd~~ 439 (709)
.+.+.|.+...+..|.+-|..+. .+|..+.-+|.+.|. ..+..++|+++|.+.++.. +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 77778888888888888665544 235555555555443 2345788999999888742 34667
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PVKWDVVAWHTLLNA 515 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~pd~~~~~~ll~~ 515 (709)
.-+.+.-.++..|.+.+|..+|.+..+... -...+|-.+...|..+|++-.|+++|+.. .-+.+..+.+.|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 777888888899999999999999876432 33447888889999999999999987632 224468888888899
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH-------------------hhhcCCchhHHHHHHHHHhCCC
Q 039873 516 SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM-------------------YAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 516 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-------------------~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
+...|.+.+|.+....+....|.|+..-..++-. ....+..++|.++|..|...+-
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998887655544432 3334567788899999987544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.4e-12 Score=126.77 Aligned_cols=417 Identities=12% Similarity=0.114 Sum_probs=272.9
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHh--cCCCchHHH-HHHHHHHHhCCCCchhHHHH
Q 039873 99 VVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCS--RSGRGAEGR-QCHGYVFKSGLVFCKYVRNA 175 (709)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~ 175 (709)
+++=|.|+. ...+|...++.-+|+.|+ ..|+..+...-..++...+ ...++--++ +.|-.|.+.|-+ +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 345566554 455678888999999999 7888777766555554432 333333221 223334343322 22222
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873 176 LVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 255 (709)
|.|.+.+ -+|+. ..+...++..||.|+++--..+.|.+++++-.....+.+..+|+.++.+.+- ..+
T Consensus 191 ------K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3455433 44444 4456789999999999999999999999999999899999999999987643 345
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHH----Hhcc----CCCHhhHHHHHHHHHHcCCHhH-HHHHHH
Q 039873 256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVF----EGLE----TRNVVLWTAMVAACFQNEYFEE-ALNLFC 326 (709)
Q Consensus 256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 326 (709)
+++..+|+...+.||..|+|+++.+.++.|+++.|++-+ .+|. +|...+|.-+|.-+.+.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 889999999999999999999999999999998876655 4444 4788999999999999888755 455555
Q ss_pred HHHh----CCCCC----CccchHHHHHHHhccCChhHHHHHHHHHHHhC----CCCC---hhHHhHHHhHHHhcCCHHHH
Q 039873 327 GMEY----EAIRP----NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG----FKEH---LIVGNALINMYAKGGNIEAA 391 (709)
Q Consensus 327 ~m~~----~g~~p----d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A 391 (709)
++.. ..++| |..-|.+.+..|.+..+.+.|.++++...... +.++ .+-|..+....++...++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 22333 44567888999999999999999998876421 2232 23345677788888888888
Q ss_pred HHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---------------
Q 039873 392 NKVFSDMRY----RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG--------------- 452 (709)
Q Consensus 392 ~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g--------------- 452 (709)
...|+.|.. |+..+-.-++.+....|+++-.-+++..|+..|..-+...-.-++.-.++..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 899988863 5666666777788888888888888888877764444333333333333222
Q ss_pred -----cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcC
Q 039873 453 -----LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWDVVAWHTLLNASRVHQ 520 (709)
Q Consensus 453 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd~~~~~~ll~~~~~~g 520 (709)
++.++.+.-..-++ .........++..-++.|.|+.++|.+++.-. +..|..-..--|+.+-.+.+
T Consensus 498 ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 11111111111011 22223345667777777788888777775422 22233322333444445555
Q ss_pred CchHHHHHHHHHHhc
Q 039873 521 NYGFGRRIAEYILHM 535 (709)
Q Consensus 521 ~~~~a~~~~~~~~~~ 535 (709)
+...|..+++-+...
T Consensus 576 spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAF 590 (625)
T ss_pred CHHHHHHHHHHHHHc
Confidence 555555555555443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1e-11 Score=121.00 Aligned_cols=420 Identities=13% Similarity=0.081 Sum_probs=236.4
Q ss_pred chHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH---ccCChHHHHHHHhcCCC-----------
Q 039873 31 EDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYA---KCNQISIARQLFDNMRQ----------- 96 (709)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~---~~g~~~~A~~~f~~~~~----------- 96 (709)
.+=++|++.. ..+.+..+--+++.|.+.|.+ .+..+.-.|+..-+ ...-+-.-++-|-.|..
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~---vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVD---VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCC---CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 3556666654 457788888899999988877 66666555554322 22211112233333331
Q ss_pred ------------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 039873 97 ------------RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS 164 (709)
Q Consensus 97 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (709)
++..++..||+++++-...+.|.++|.+-. ....+.+..+||.+|.+.+ +..++.+..+|+..
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQ 267 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHh
Confidence 233456666666666666666666666666 5555666666666665543 22335666666666
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039873 165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFG 244 (709)
Q Consensus 165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 244 (709)
...||.+|+|+++...++.|.++.|++. |++++.+|++.|+.|...+|..++.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik 320 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIK 320 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHH
Confidence 6666666666666666666666655543 4556666777777777777766666
Q ss_pred HHhcCCCcHH-HHHHHHHHHH----cCCCC----chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----------CHhh
Q 039873 245 LSASLKDLKL-GLQVHSQMLK----SDIEP----DVFINSAMISMYGKCGKFSNAKKVFEGLETR-----------NVVL 304 (709)
Q Consensus 245 ~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~ 304 (709)
.+.+.++..+ +..+..++.. ..+.| |..-+..-++.+.+..+.+-|.++-.-+... ...-
T Consensus 321 ~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fY 400 (625)
T KOG4422|consen 321 NFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFY 400 (625)
T ss_pred HhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHH
Confidence 6666655533 3333333322 11222 3334445555555666666666655444321 1233
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873 305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384 (709)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 384 (709)
|..+....++....+.-+..|..|.-.-+-|+..+...++++....+.++...+++..++..|.........-+...+++
T Consensus 401 yr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 401 YRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 55566677777788888888888887777888888888888888888888888888888877644333332222222222
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 385 GGNIEAANKVFSDMRYRDIITWNAMICGYSHH--GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
.. ..|+...-..+-...++. .-.+.....-.+|.+....|. ..+.++.-+.+.|..++|.+++.
T Consensus 481 ~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 481 DK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred CC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHH
Confidence 21 012211111111111110 001111122234444333333 34444445667777777777777
Q ss_pred HHHHhhCCCCChHHHHH---HHHHHHhcCCHHHHHHHHHhC
Q 039873 463 HLMKQIGIVPGLEHYTC---IVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~ 500 (709)
...++..-.|.....++ +++.-.+......|...++-+
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 76554444444444453 344445666677777766544
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=2.4e-10 Score=117.23 Aligned_cols=461 Identities=10% Similarity=0.040 Sum_probs=331.8
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHH----HhCCCCchhHHHHHHHHHHh
Q 039873 107 TWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVF----KSGLVFCKYVRNALVELYTK 182 (709)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~ 182 (709)
.+|.+-.-++.|..+++..+ ..++.+...|.+..+.=-..|+.+....+.+.-+ ..|+..+..-|-.=...+-+
T Consensus 414 lAlarLetYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34555566777777777775 4566677777776666666777776666655433 35666666666555555666
Q ss_pred cCChHHHHHHHhhCCC-----C-CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCCcHHH
Q 039873 183 CLDVEMAKRLLDLLPG-----Y-DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW-DSVTYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 183 ~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a 255 (709)
.|..-....+...... . --.+|+.-...|.+.+.++-|..+|...++. -| +...|......=-..|..+.-
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666555555544322 1 2246777778888888888888888777663 33 333455555444566777777
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873 256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA 332 (709)
Q Consensus 256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 332 (709)
..++..++..- +.....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-..+.++++|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 77887777663 44455666666677778888888888887654 24567888888888888889999888887763
Q ss_pred CCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHH
Q 039873 333 IRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAM 409 (709)
Q Consensus 333 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~l 409 (709)
.|+...|.--+..---++..++|.++++..++. ++.-...|-.+.+.|-+.++++.|.+.|..-.+ | .+..|-.|
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 455555554444455567888888888888775 355567788888888888888888888876553 4 34578777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873 410 ICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL 489 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 489 (709)
...=-+.|..-+|..+|++.+..+ +-|...|...+..-.+.|+.++|.....++.++ .+.+-..|.--|.+..+.++
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCccc
Confidence 777778888888999998888754 446678888888888889999998888887763 45556678888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 490 LDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 490 ~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
-..+...+++.. .|+.+.-++...+-....++.|.+.|+++.+.+|++..++.-+...+...|.-++-.++++.....
T Consensus 803 kTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 803 KTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred chHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 777777777764 456666666677778889999999999999999999999999999999999999999999887653
Q ss_pred CCccCCceeEEEE
Q 039873 570 KVKKEPGSSWTEI 582 (709)
Q Consensus 570 ~~~~~~~~s~~~~ 582 (709)
.|.-|..|..+
T Consensus 881 --EP~hG~~W~av 891 (913)
T KOG0495|consen 881 --EPTHGELWQAV 891 (913)
T ss_pred --CCCCCcHHHHH
Confidence 34455667644
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.9e-12 Score=125.23 Aligned_cols=503 Identities=11% Similarity=0.049 Sum_probs=313.3
Q ss_pred CCcchHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC----CCc
Q 039873 28 PSVEDTLKLLKHSADSKDLKLGKVIHAHLIIT----TESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ----RNV 99 (709)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~ 99 (709)
....-|-..|.-....|+-+.+.--|+.-... .++ .+..+...|..-|.......+|+..++-+.+ ||.
T Consensus 160 n~~~~~k~aldkakdagrker~lvk~req~~~~e~inld---ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~na 236 (840)
T KOG2003|consen 160 NECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLD---LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNA 236 (840)
T ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhcccc---chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCC
Confidence 34445666666666667666666555543322 223 3444555566677777777888888776654 222
Q ss_pred chH-HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhh----HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHH
Q 039873 100 VSY-SSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYI----FSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRN 174 (709)
Q Consensus 100 ~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (709)
-.. -.+-..+.+...+..|+++|+-.. ..-...+..+ .+.+--.+.+.|+++.|..-|+...+. .|+..+.-
T Consensus 237 g~lkmnigni~~kkr~fskaikfyrmal-dqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~ 313 (840)
T KOG2003|consen 237 GILKMNIGNIHFKKREFSKAIKFYRMAL-DQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAAL 313 (840)
T ss_pred ceeeeeecceeeehhhHHHHHHHHHHHH-hhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhh
Confidence 111 112334567777888888887655 2211122222 333333456778888888888887776 46666666
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC----------------CCcccHHHHH-----HHHHhCC--CccHHHHHHHHHHhCC
Q 039873 175 ALVELYTKCLDVEMAKRLLDLLPG----------------YDVFEYNSVL-----NGLIENE--CFRGGVEVLGKMVSGS 231 (709)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~~~~----------------~~~~~~~~li-----~~~~~~g--~~~~A~~l~~~m~~~g 231 (709)
.|+-.|.--|+-+...+.|.+|.. |+....|.-| .-.-+.. +.++++-.-.++..--
T Consensus 314 nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv 393 (840)
T KOG2003|consen 314 NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV 393 (840)
T ss_pred hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc
Confidence 666666677888888888877642 2222222222 1111111 1122222222222222
Q ss_pred CCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHH----
Q 039873 232 VRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTA---- 307 (709)
Q Consensus 232 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---- 307 (709)
+.||-. .--..| .+.+..-.-..+..+.. -.-..-|.+.|+++.|.++++-...+|..+-++
T Consensus 394 i~~~fa---~g~dwc---------le~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~n 459 (840)
T KOG2003|consen 394 IAPDFA---AGCDWC---------LESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANN 459 (840)
T ss_pred cccchh---cccHHH---------HHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhh
Confidence 233211 000111 11111110000111111 112335779999999999988887765433222
Q ss_pred HH-HHHHHc-CCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc
Q 039873 308 MV-AACFQN-EYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG 385 (709)
Q Consensus 308 li-~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 385 (709)
|- --|.+- .++..|...-+...... +-|....+.--+.....|+++.|.+.+.+++...-......|| +.-.|-+.
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~ 537 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEAL 537 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHh
Confidence 22 223333 34566666555444221 1111111111122345689999999999998766444444444 34457789
Q ss_pred CCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 386 GNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 386 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
|++++|++.|-++. ..++...-.+.+.|....++.+|++++.+.... ++.|...+..+...|-+.|+-.+|.+.+-
T Consensus 538 ~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 99999999998765 467777778889999999999999999877663 44467788888899999999999999876
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCchHHHHHHHHHHhcCCCCc
Q 039873 463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNAS-RVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
.--+ -++-+.++..-|..-|....-+++|..+|++. -++|+.+-|..++..| ++.|++..|.++++.....-|.|.
T Consensus 617 dsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 617 DSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred hccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 6422 34557888888889999999999999999865 4689999999999876 678999999999999999999999
Q ss_pred hhHHHHHHHhhhcCC
Q 039873 541 GTYILLSNMYAKEKR 555 (709)
Q Consensus 541 ~~~~~l~~~~~~~g~ 555 (709)
...-.|+.++...|.
T Consensus 695 dclkflvri~~dlgl 709 (840)
T KOG2003|consen 695 DCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhccccc
Confidence 999999999988885
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=2.2e-09 Score=110.29 Aligned_cols=490 Identities=11% Similarity=0.054 Sum_probs=375.3
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhC
Q 039873 36 LLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHN 112 (709)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 112 (709)
|-++.......+.|+.++..+++.=+ .+.. |.-+|++...++.|.+++++..+ .+...|-+-...--.+
T Consensus 382 LWKaAVelE~~~darilL~rAveccp----~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 382 LWKAAVELEEPEDARILLERAVECCP----QSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEAN 453 (913)
T ss_pred HHHHHHhccChHHHHHHHHHHHHhcc----chHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhc
Confidence 33444455555666766666666422 2333 33466777788899999887764 4667787766666778
Q ss_pred CChhHHHHHHHH----hhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCh
Q 039873 113 GFLLETLKLFKN----MVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC--KYVRNALVELYTKCLDV 186 (709)
Q Consensus 113 g~~~~A~~~~~~----m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~ 186 (709)
|+.+...++..+ +. ..|+..+...|..=..+|-..|..-.+..+...++..|++.. ..+|+.-...+.+.+.+
T Consensus 454 gn~~mv~kii~rgl~~L~-~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~ 532 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQ-ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI 532 (913)
T ss_pred CCHHHHHHHHHHHHHHHh-hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH
Confidence 888877777644 44 689999999999999999999999999999999999887543 46888888999999999
Q ss_pred HHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039873 187 EMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQML 263 (709)
Q Consensus 187 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (709)
+-|+.+|....+ .+...|...+..=-..|..++-..+|++.+..-. -....+.......-..|++..|+.++.++.
T Consensus 533 ~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999987654 3666788777777778999999999999987622 233344445555667799999999999998
Q ss_pred HcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-ch
Q 039873 264 KSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-TF 340 (709)
Q Consensus 264 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~ 340 (709)
+.. +.+..+|-+-+..-.....++.|+.+|.+... ++...|.--+..---.+..++|++++++.++. -|+.. .|
T Consensus 612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~ 688 (913)
T KOG0495|consen 612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLW 688 (913)
T ss_pred HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHH
Confidence 876 45788999999999999999999999998764 45666766666666678899999999888764 56654 45
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcC
Q 039873 341 AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHG 417 (709)
Q Consensus 341 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 417 (709)
..+.+.+-+.++++.|+..|..=.+. ++..+..|-.|...--+.|.+-.|..+|++..- .|...|-..|..-.+.|
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 55556677778888888777654443 356677888999999999999999999998763 46789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873 418 LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFM 497 (709)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (709)
..+.|..+..+..+. ++.+...|.--|....+.+.-..... +++ ..+-|..+.-++..++....+++.|++.|
T Consensus 768 n~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D----ALk--kce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID----ALK--KCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred CHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH----HHH--hccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988875 45555667666666666555333322 233 34556677888889999999999999998
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 498 RST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 498 ~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
.+. ...|| ..+|--+..-+.+||.-+.-.+++.+....+|.....+...
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 754 45566 78899899999999999999999999999999765555444
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=8.1e-10 Score=117.98 Aligned_cols=346 Identities=12% Similarity=0.095 Sum_probs=243.4
Q ss_pred hcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChh
Q 039873 40 SADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMR---QRNVVSYSSLMTWYLHNGFLL 116 (709)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 116 (709)
....|+++.|..++..+++..+ .+...|-.|...|-..|+.+++...+-..- ..|..-|-.+-....+.|+++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3345999999999999998765 478889999999999999999987664433 346677888888888899999
Q ss_pred HHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHH----HHHHHhcCChHHHHHH
Q 039873 117 ETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNAL----VELYTKCLDVEMAKRL 192 (709)
Q Consensus 117 ~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~ 192 (709)
+|.-.|.+..+ . -+++...+---...|-+.|+...|..-+.++.......|..-...+ +..|...++-+.|.+.
T Consensus 225 qA~~cy~rAI~-~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQ-A-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHh-c-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998872 2 1233333333455677889999999999988887654443333333 4556666777888888
Q ss_pred HhhCCC--C---CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----------------------hhhH----HH
Q 039873 193 LDLLPG--Y---DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWD----------------------SVTY----VN 241 (709)
Q Consensus 193 f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------~~t~----~~ 241 (709)
++.... . +...+|.++..|.+...++.|......+......+| ...| .-
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 877654 2 344688899999999999999998888876222222 1111 12
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCHhhHHHHHHHHHHc
Q 039873 242 AFGLSASLKDLKLGLQVHSQMLKSD--IEPDVFINSAMISMYGKCGKFSNAKKVFEGLET----RNVVLWTAMVAACFQN 315 (709)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~ 315 (709)
+.-++......+....+...+.+.. ...+...+.-+.++|...|++.+|.++|..+.. .+...|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2233445556666666666666666 344566788888888899999999998888865 3567888888888889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcc-chHHHHHHHhccCChhHHHHHHHHHH--------HhCCCCChhHHhHHHhHHHhcC
Q 039873 316 EYFEEALNLFCGMEYEAIRPNEF-TFAVMLNSAAGLSALRHGDLLHAHIE--------KSGFKEHLIVGNALINMYAKGG 386 (709)
Q Consensus 316 g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g 386 (709)
|.+++|++.|.+.+.. .|+.. .-.++-..+.+.|+.++|.+.+..+. ..+..|+..+.-...+.|.+.|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999988888764 34432 23344455677888888888887743 2344556666666777777888
Q ss_pred CHHHHHH
Q 039873 387 NIEAANK 393 (709)
Q Consensus 387 ~~~~A~~ 393 (709)
+.++=..
T Consensus 541 k~E~fi~ 547 (895)
T KOG2076|consen 541 KREEFIN 547 (895)
T ss_pred hHHHHHH
Confidence 7766433
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1.2e-10 Score=123.25 Aligned_cols=527 Identities=11% Similarity=0.024 Sum_probs=304.4
Q ss_pred chHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC
Q 039873 17 APFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ 96 (709)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~ 96 (709)
|...++..|+.|+..||.+++..|+..|+.+.|. ++..|.-.... .+..+++.++......++.+.+. +
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp---v~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP---VREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc---ccchhHHHHHhcccccccccCCC-------C
Confidence 5566778899999999999999999999999998 99998887776 78888999999888888877765 6
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHH-hhh------CCCCCCChhhHHHHHHHHhcCC-Cc------hHHHHHHHHHH
Q 039873 97 RNVVSYSSLMTWYLHNGFLLETLKLFKN-MVS------GDNLEPNEYIFSIVLSSCSRSG-RG------AEGRQCHGYVF 162 (709)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~------~~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~ 162 (709)
|-..+|+.|+.+|.+.|+... ++..++ |.+ ..|+---..-|-..+.+|...- +. .--+.+++..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999998754 222222 210 1222211222222222221110 00 01122333344
Q ss_pred HhCCCCchhHHHH----HHHHHH-hcCChHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCh
Q 039873 163 KSGLVFCKYVRNA----LVELYT-KCLDVEMAKRLLDLLPG-YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDS 236 (709)
Q Consensus 163 ~~g~~~~~~~~~~----li~~y~-~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 236 (709)
+.+....+..++. .+.-.. -...+++-........+ ++..++.+++..-.-+|+.+.|..++.+|.+.|+..+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 4331111111111 111111 11233444444444444 78999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcC
Q 039873 237 VTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNE 316 (709)
Q Consensus 237 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 316 (709)
+-|..++-+ .++......+..-|...|+.|+..|+.--+-.+.+.|....+....+.-.--....+..+..|...+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 988888765 78888888999999999999999999888777777655333222211100001122333333311111
Q ss_pred C-----HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873 317 Y-----FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA 391 (709)
Q Consensus 317 ~-----~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 391 (709)
+ ..-....+++..-.|+......|. +..-....|.-+..+++-+.+..- .....+.-+++|. +.+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~~-----~~l 386 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAFG-----ALL 386 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHHH-----HHH
Confidence 1 122222333333334333332222 222223356666666666665421 1111111222221 234
Q ss_pred HHHHhhcCCCChh-hHHHHHHHHHH---cCChHHHHHHHHHH------------HHC----CCCC-------CHHHHHHH
Q 039873 392 NKVFSDMRYRDII-TWNAMICGYSH---HGLGREALTLFQNM------------LAA----EERP-------NHVTFVGV 444 (709)
Q Consensus 392 ~~~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~~----g~~p-------d~~t~~~l 444 (709)
.+.|.++..+... .++ .-.+... .....+..++.... ... -+.| -...-+.+
T Consensus 387 rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 4555555443222 111 1111111 11111111111111 100 0111 11123344
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 039873 445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV-----KWDVVAWHTLLNASRVH 519 (709)
Q Consensus 445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~pd~~~~~~ll~~~~~~ 519 (709)
+..|.+.-+..++...-+.. +..-+. ..|..||+.+....++++|..+.++... .-|..-+..+.+...++
T Consensus 466 ~l~l~se~n~lK~l~~~eky-e~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKY-EDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 45555555555555433332 211222 4789999999999999999999877641 22344566777888888
Q ss_pred CCchHHHHHHHHHHh---cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCcc
Q 039873 520 QNYGFGRRIAEYILH---MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKK 573 (709)
Q Consensus 520 g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 573 (709)
+....+..+.+.+.+ ..|.-..+..-+.+..+..|+.+.-.+.++-+..-|+.-
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888887765 234445667788888899999999999999998888754
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.4e-13 Score=138.26 Aligned_cols=255 Identities=16% Similarity=0.133 Sum_probs=108.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH-HHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873 309 VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV-MLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387 (709)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 387 (709)
...+.+.|++++|++++++-......|+...|-. +...+...++.+.|.+.++.+...+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 3445556666666666644333322333333333 2233444566666666666666554 2245556666666 57788
Q ss_pred HHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873 388 IEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464 (709)
Q Consensus 388 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 464 (709)
+++|.+++...- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877653 3566677888888888999999999998877533 3446667777778888899999999999988
Q ss_pred HHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 465 MKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 465 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
.+. .|+ ......++..+...|+.+++.++++... ...|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 764 454 6678888999999999998777765431 1345678899999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 542 TYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 542 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
....+++++...|+.++|.+++++...
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887643
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.5e-10 Score=121.73 Aligned_cols=285 Identities=12% Similarity=0.017 Sum_probs=178.8
Q ss_pred CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCChHHHH
Q 039873 214 NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF--INSAMISMYGKCGKFSNAK 291 (709)
Q Consensus 214 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 291 (709)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+. .|+.. ........+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666654432111 222333344456778888888888887764 34432 2224466788888888888
Q ss_pred HHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 039873 292 KVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF 368 (709)
Q Consensus 292 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 368 (709)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 88888764 35667778888888889999999999888876543221 1110000
Q ss_pred CCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039873 369 KEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVL 445 (709)
Q Consensus 369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 445 (709)
.++..++....+..+.+...++++.++ ..++.....+...+...|+.++|.+++++..+ ..||.... ++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HH
Confidence 011111222222234455555555554 24566677777777777778888777777766 24444211 22
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchH
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~ 524 (709)
.+....++.+++.+..+...+++ +-|.....++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 33334577777777777776532 233446677777788888888888877743 456777777777778888888888
Q ss_pred HHHHHHHHHhc
Q 039873 525 GRRIAEYILHM 535 (709)
Q Consensus 525 a~~~~~~~~~~ 535 (709)
|.+.+++.+.+
T Consensus 380 A~~~~~~~l~~ 390 (398)
T PRK10747 380 AAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhh
Confidence 88888877664
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.41 E-value=5.2e-10 Score=119.42 Aligned_cols=350 Identities=11% Similarity=0.115 Sum_probs=198.9
Q ss_pred CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 039873 214 NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKV 293 (709)
Q Consensus 214 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 293 (709)
.|+.++|..++.+..+... -+...|-++...+-..|+.+.+...+-.+--.. +.|...|..+.+...+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3777777777777666432 244566667777777777666665543333222 44556666677777777777777777
Q ss_pred HHhccCCCHhhHHH---HHHHHHHcCCHhHHHHHHHHHHhCCCCCCc----cchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873 294 FEGLETRNVVLWTA---MVAACFQNEYFEEALNLFCGMEYEAIRPNE----FTFAVMLNSAAGLSALRHGDLLHAHIEKS 366 (709)
Q Consensus 294 ~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 366 (709)
|.+..+.++.-|-. -+..|-+.|+...|++.|.++.+...+.|. .+...++..+...++-+.|.+++......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 77665533322322 245566667777777777776654221111 11122233333333334444444433331
Q ss_pred -CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHH--HCCCCCCHH
Q 039873 367 -GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY----RDIITWNAMICGYSHHGLGREALTLFQNML--AAEERPNHV 439 (709)
Q Consensus 367 -g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~pd~~ 439 (709)
+-..+...++.++.+|.+...++.|......+.. +|..-|.+- ..++ .-+.-.. ..++.++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCccch
Confidence 1122333344444444444444444443333321 111111000 0000 0000000 011223322
Q ss_pred HHHHHHHHHhc--cccHHHHHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHH
Q 039873 440 TFVGVLSACGH--LGLVQEGFYYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK---WDVVAWHTL 512 (709)
Q Consensus 440 t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---pd~~~~~~l 512 (709)
.+ .+.-+..+ .+...+++..| ... .. ..-+...|.-+.++|...|++.+|+++|..+-.. .+...|--+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~--l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHF--LVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHH--HHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 21 11112223 33333443333 222 34 3334678899999999999999999998865322 247899999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeE
Q 039873 513 LNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSW 579 (709)
Q Consensus 513 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 579 (709)
...+...|.+++|.+.+++++...|++..+-..|+.+|...|+.++|.+.+..|..-+-+..+++.|
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999987544434455555
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.1e-08 Score=99.57 Aligned_cols=478 Identities=11% Similarity=0.041 Sum_probs=332.9
Q ss_pred ccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHH
Q 039873 80 KCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQ 156 (709)
Q Consensus 80 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (709)
..+++..|+.+|++... +++..|-.-+..-.++.....|..+|+... ..=...|..-|. -+-.=-..|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv-t~lPRVdqlWyK-Y~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV-TILPRVDQLWYK-YIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH-HhcchHHHHHHH-HHHHHHHhcccHHHHH
Confidence 45677788888887764 566777777777778888888888888765 211112332222 2222335678888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC--CCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 039873 157 CHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLL--PGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW 234 (709)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 234 (709)
+|..-.+- .|+...|++.|+.=.+-..++.|+.++++. ..|++.+|--...-=-++|+...|..+|....+. -.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 88877654 788888888888888888889998888874 4578888888777777888888888888877652 12
Q ss_pred ChhhHHHHHHHH----hcCCCcHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCh---HHHHHH-----HHhccCC
Q 039873 235 DSVTYVNAFGLS----ASLKDLKLGLQVHSQMLKSDIEPD--VFINSAMISMYGKCGKF---SNAKKV-----FEGLETR 300 (709)
Q Consensus 235 ~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~---~~A~~~-----~~~m~~~ 300 (709)
|...-..++.++ .....++.|.-++...+..- +.+ ...|..++..=-+-|+. ++++-- ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 223223333333 35567888888888888763 333 44555555554555654 444322 2233333
Q ss_pred ---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-------chHH---HHHHHhccCChhHHHHHHHHHHHhC
Q 039873 301 ---NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-------TFAV---MLNSAAGLSALRHGDLLHAHIEKSG 367 (709)
Q Consensus 301 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~---ll~~~~~~~~~~~a~~i~~~~~~~g 367 (709)
|-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.- .+-.=....+.+.++++++..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 4466777777777789999999999998854 555221 1111 111113567899999999999883
Q ss_pred CCCChhHHhHHHhHHH----hcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 039873 368 FKEHLIVGNALINMYA----KGGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVT 440 (709)
Q Consensus 368 ~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t 440 (709)
++...+++.-+=-+|+ ++.++..|.+++.... .|-..++...|..=.+.+.++....+|++.++- .| |..+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHH
Confidence 4556666666655565 5789999999998766 477778888888888999999999999999994 45 6678
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH--
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNASR-- 517 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~~-- 517 (709)
|.....--...|+.+.|..+|..++.+-.+......|.+.|+-=..+|.++.|..+++.+ ...+..-+|-++..--.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccc
Confidence 888777778899999999999998876555555678889999999999999999998865 22345568877765322
Q ss_pred ---hcC-----------CchHHHHHHHHHHhc----CCCC--chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 518 ---VHQ-----------NYGFGRRIAEYILHM----DPND--VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 518 ---~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+.+ +...|..+|+.+... +|.. ....-.+.++=...|...+...+-+.|++
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 333 567788899887653 3321 22333455566677888888888888875
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=6.7e-10 Score=110.48 Aligned_cols=404 Identities=12% Similarity=0.007 Sum_probs=221.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHH
Q 039873 102 YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPN-EYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC-KYVRNALVEL 179 (709)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 179 (709)
+-..-+-|.++|.+++|++.|.+... ..|| +.-|...-.+|...|+++...+--...++. .|+ +-.+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 33345567889999999999999873 6788 666777777778889999888766666554 444 3345555677
Q ss_pred HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHH---------HHh--CCCCCChhhHHHHHHHHhc
Q 039873 180 YTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGK---------MVS--GSVRWDSVTYVNAFGLSAS 248 (709)
Q Consensus 180 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~--~g~~p~~~t~~~ll~~~~~ 248 (709)
+-..|++++|+.= +|-.++..++-.+.-.--+.+++.+ |.+ ..+-|+.....+.+..+-.
T Consensus 193 ~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 7778888777531 2223333333222222222222222 111 1233444444444433321
Q ss_pred CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CChHHHHHHHHhcc-------CCC---------HhhHHHHHHH
Q 039873 249 LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC-GKFSNAKKVFEGLE-------TRN---------VVLWTAMVAA 311 (709)
Q Consensus 249 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~-------~~~---------~~~~~~li~~ 311 (709)
.-.. .+...+-..|...-..+=..|... ..+..|...+.+-. ..+ ..+.+....-
T Consensus 264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 1000 000000001111111111111111 01222222222110 001 0111111111
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873 312 CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA 391 (709)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 391 (709)
+.-.|+..+|.+.|+.. ++....+ ...|--+..+|....+.++-
T Consensus 336 ~fL~g~~~~a~~d~~~~-----------------------------------I~l~~~~-~~lyI~~a~~y~d~~~~~~~ 379 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAA-----------------------------------IKLDPAF-NSLYIKRAAAYADENQSEKM 379 (606)
T ss_pred hhhcCCchhhhhhHHHH-----------------------------------HhcCccc-chHHHHHHHHHhhhhccHHH
Confidence 22234444444444444 4432111 11133334455555555555
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873 392 NKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQ 467 (709)
Q Consensus 392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 467 (709)
...|++..+ .|..+|.--...+.-.+++++|..=|++.+. +.|+ ...|..+-.+..+.+.++++...|+...++
T Consensus 380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555442 2333444444444445567777777777766 5564 446766666777778888888888887664
Q ss_pred hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC---------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 468 IGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD---------VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
++..+++|+-....+...++++.|.+.|+. +.++|+ +.+-.+++- .+-.+++..|+.+++++++++|
T Consensus 458 --FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 458 --FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred --CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCc
Confidence 444556778888888888888888888763 344444 122222222 2234899999999999999999
Q ss_pred CCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 538 NDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.....|..|+.+-...|+.++|.++|+....
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9989999999999999999999999987653
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.1e-09 Score=115.87 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=180.2
Q ss_pred hCCCccHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH
Q 039873 213 ENECFRGGVEVLGKMVSGSVRWDSV-TYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAK 291 (709)
Q Consensus 213 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 291 (709)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+..-.+...+.-.....+...|+.+.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 478888888888877664 34433 334445666777888888888888776532222334455577778888888888
Q ss_pred HHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 039873 292 KVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF 368 (709)
Q Consensus 292 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 368 (709)
..++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+.. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 88887764 25566777788888888888888888888876532211 1110000
Q ss_pred CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 039873 369 KEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTF---V 442 (709)
Q Consensus 369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~---~ 442 (709)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+.+++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112234445555555553 47778888888888899999999998888884 4554321 1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhc
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR---STPVKWDVVAWHTLLNASRVH 519 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~pd~~~~~~ll~~~~~~ 519 (709)
.........++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+ .....||...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 11112233466677777777765543333332455567777777777777777777 334456666666666677777
Q ss_pred CCchHHHHHHHHHHh
Q 039873 520 QNYGFGRRIAEYILH 534 (709)
Q Consensus 520 g~~~~a~~~~~~~~~ 534 (709)
|+.++|.+++++.+.
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776544
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1e-10 Score=120.99 Aligned_cols=162 Identities=14% Similarity=0.027 Sum_probs=94.6
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWN---AMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA 447 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 447 (709)
.++|+.+..=+....++|.|...|+.....|..-|| -+...|.+.++++.|+-.|++..+ +.| |.+....+...
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRI 532 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHH
Confidence 344444444455555666666666665544443333 344555666666666666666555 344 23344444444
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRR 527 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~ 527 (709)
+-+.|..++|+++++.+.. +.|. |+..---.+..+...+++++|.+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~---ld~k-------------------------------n~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIH---LDPK-------------------------------NPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred HHHhhhhhHHHHHHHHHHh---cCCC-------------------------------CchhHHHHHHHHHhhcchHHHHH
Confidence 4455555555555554432 1111 22222223333445677888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 528 IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.++++.++-|++...|..++.+|-+.|+.+.|..-|.-|.+-
T Consensus 579 ~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 579 ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 888888888888888888888888888888888877777653
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.5e-10 Score=110.97 Aligned_cols=414 Identities=12% Similarity=0.059 Sum_probs=248.5
Q ss_pred CchHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhC----CCCC----cccHHHHHHHHHhCCCccHH
Q 039873 150 RGAEGRQCHGYVFKSGLVFCKYVR-NALVELYTKCLDVEMAKRLLDLL----PGYD----VFEYNSVLNGLIENECFRGG 220 (709)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~----~~~~----~~~~~~li~~~~~~g~~~~A 220 (709)
...+|...++.+++...-|+.-.. -.+-+.|.+...+..|.+.++.. +.-+ +...|.+--.+++.|+++.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 344555555555555444443221 11223455555666666655432 2211 11233333456677777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC------------CchHHHHHHH-----HHHHh
Q 039873 221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE------------PDVFINSAMI-----SMYGK 283 (709)
Q Consensus 221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~li-----~~y~~ 283 (709)
+.-|+...+. .|+-.+-..++-++...|+-+..++.|..|+..... |+....|--| .-.-+
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 7777766553 566665545555555667777777777776654322 2222222211 11111
Q ss_pred cC--ChHHHH----HHHHhccCCCHh---hHH------------------HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 039873 284 CG--KFSNAK----KVFEGLETRNVV---LWT------------------AMVAACFQNEYFEEALNLFCGMEYEAIRPN 336 (709)
Q Consensus 284 ~g--~~~~A~----~~~~~m~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 336 (709)
.. +.++++ ++..-+..++-. -|. .-..-|.++|+++.|+++++-..+..-+.-
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 11 111111 111111122210 011 112357899999999999988765432221
Q ss_pred c--cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHH---H
Q 039873 337 E--FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMI---C 411 (709)
Q Consensus 337 ~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~ 411 (709)
. .+-.+++.-.....++-.|.++-+.++... .-+....+.-.+.-...|++++|.+.|++....|...-.+|. .
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 1 122223333333456777777766665432 122222222223334579999999999999887776555543 3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (709)
.+-..|+.++|++.|-++..- +..+...+..+.+.|-...+..+|++++.+... -++.|+.+.+-|.++|-+.|+-.
T Consensus 533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchh
Confidence 467789999999999888663 344556777888888889999999999877632 44556788999999999999999
Q ss_pred HHHHH-HHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 492 EAEKF-MRSTPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 492 ~A~~~-~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+|.+. +++...-| +..+..-|..-|....-.+.++..|+++.-+.|+...--..+...+-+.|++..|..+++....+
T Consensus 610 qafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 610 QAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99987 44443323 44455546666666777899999999999999976544445556667899999999999998764
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=4.4e-10 Score=118.30 Aligned_cols=275 Identities=12% Similarity=0.031 Sum_probs=200.9
Q ss_pred cCChHHHHHHHHhccCC--C-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH--HHHHHHhccCChhHHHH
Q 039873 284 CGKFSNAKKVFEGLETR--N-VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA--VMLNSAAGLSALRHGDL 358 (709)
Q Consensus 284 ~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~ 358 (709)
.|+++.|++.+....+. + ...+-.......+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777766543 2 233333334447888888888888888753 45554333 22456677888888888
Q ss_pred HHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHHH
Q 039873 359 LHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI-----------ITWNAMICGYSHHGLGREALTLFQ 427 (709)
Q Consensus 359 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 427 (709)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888776 66778888899999999999999999888874321 133444444444555666667777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-
Q 039873 428 NMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD- 505 (709)
Q Consensus 428 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd- 505 (709)
.+-.. .+.+......+..++...|+.++|...++...+ ..|+.... ++......|+.+++.+..++. ...||
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 345677888889999999999999999988765 34554222 223333559999999988754 23455
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+..+.++...|...+++++|.+.|+++++.+|++ ..|..|..++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667788889999999999999999999999975 6788999999999999999999987653
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=3.7e-12 Score=127.92 Aligned_cols=253 Identities=16% Similarity=0.126 Sum_probs=78.8
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHH-HHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 039873 208 LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNA-FGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK 286 (709)
Q Consensus 208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 286 (709)
...+.+.|++++|++++.+-......|+...|..+ ...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 44455566666666666544333223444433332 233344566666666666666554 2244455555555 56667
Q ss_pred hHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCccchHHHHHHHhccCChhHHHHHHHHH
Q 039873 287 FSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA-IRPNEFTFAVMLNSAAGLSALRHGDLLHAHI 363 (709)
Q Consensus 287 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 363 (709)
.++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+.+...|..+...+.+.|+.+.|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666655432 345556666666777777777777777665422 2334444555555556666666666666666
Q ss_pred HHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873 364 EKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT 440 (709)
Q Consensus 364 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 440 (709)
++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|++++|+..|++..... +.|..+
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 6654 3345566666666666666666555555443 2455566666667777777777777777766531 234555
Q ss_pred HHHHHHHHhccccHHHHHHHHHHH
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHL 464 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~ 464 (709)
...+..++...|..++|.++....
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 666666666677777766665554
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=6.8e-10 Score=117.54 Aligned_cols=281 Identities=8% Similarity=-0.006 Sum_probs=190.6
Q ss_pred HhcCChHHHHHHHhhCCCC--Cc-ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCCcHHH
Q 039873 181 TKCLDVEMAKRLLDLLPGY--DV-FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSV--TYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 181 ~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 255 (709)
...|+++.|++.+.+..+. +. ..+-.....+.+.|+++.|.+.|.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3679999999999887653 22 223344567778899999999999987653 4543 333346777889999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCC---HhhHHHH----HHHHHHcCCHhHHHHHHHHH
Q 039873 256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRN---VVLWTAM----VAACFQNEYFEEALNLFCGM 328 (709)
Q Consensus 256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~l----i~~~~~~g~~~~A~~~~~~m 328 (709)
.+.++.+.+.. +.+..+...+..+|.+.|++++|.+.++.+.+.. ...+..+ ..++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 6677889999999999999999999999987542 2222111 11112112222222222222
Q ss_pred HhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhh-
Q 039873 329 EYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDIIT- 405 (709)
Q Consensus 329 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~- 405 (709)
.... | + ..+.+...+..+...+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~~--p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 2110 1 0 0123566666777777778888888887777654 33221
Q ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873 406 --WNAMICGYSHHGLGREALTLFQNMLAAEERPNHV---TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI 480 (709)
Q Consensus 406 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 480 (709)
+..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... ....|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 122222333456778888888887763 55544 455777888999999999999985322 4567888888899
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 039873 481 VGLLSKAGLLDEAEKFMRS 499 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~ 499 (709)
...+.+.|+.++|.+++++
T Consensus 377 a~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999998875
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-09 Score=106.46 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=145.1
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA 447 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 447 (709)
+.+...+.+-|+-.++.++|...|++..+ +-...|+.|..-|....+...|++-+++..+ +.| |...|-++..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 45566677778888888888888887764 3346888888888888888899999998888 445 67788889999
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCchH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRSTPV--KWDVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~ 524 (709)
|.-.+...-|+-+|++..+ ..| |...|.+|.+.|.+.+++++|.+.|...-. ..+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9888888888888888743 444 577888999999999999999988875421 2345778888888888889999
Q ss_pred HHHHHHHHHh-------cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 525 GRRIAEYILH-------MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 525 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
|.+.+++-++ .+|.-..+-.-|..-+.+.+++++|...-....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9988888776 223222333456777788888888887665553
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=8.8e-11 Score=121.46 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=186.4
Q ss_pred CHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhC--CCCChhHHhHHHhHHHhcCCHHH-HHH
Q 039873 317 YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG--FKEHLIVGNALINMYAKGGNIEA-ANK 393 (709)
Q Consensus 317 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~ 393 (709)
+.++|+.+|...... +.-.......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467888888884432 22233455667778888888888888888887643 12355666666544332211111 222
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC
Q 039873 394 VFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP 472 (709)
Q Consensus 394 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 472 (709)
+.+ +....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.. +..
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~ 484 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV 484 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence 222 2234678999999999999999999999999988 677 5678888888888889999999999875 345
Q ss_pred ChHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 473 GLEHYTC---IVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 473 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
+..+|++ |.-.|.|.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|+++++++..++|.|+-.-+.-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5567776 456789999999999999854 56675 566666777888999999999999999999999999999999
Q ss_pred HHhhhcCCchhHHHHHHHHHh
Q 039873 548 NMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 548 ~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999986
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1e-08 Score=101.74 Aligned_cols=379 Identities=10% Similarity=0.045 Sum_probs=208.8
Q ss_pred CChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHH
Q 039873 184 LDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHS 260 (709)
Q Consensus 184 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 260 (709)
+++..|+.+|++... ++...|---+..=.++.+...|..++++.+..=...|..-| --+..=-..|++..|+++|+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHHH
Confidence 344455555554433 34444555555555555555555555555443222222211 11112223466666666666
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc--cCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc
Q 039873 261 QMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL--ETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF 338 (709)
Q Consensus 261 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 338 (709)
.-.+. .|+...|++.|+.=.+-..++.|+.++++. ..|++.+|--...-=.++|....|..+|....+. -.|..
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHH
Confidence 55543 566666666666666666666666666663 3466666666555555666666666666655442 11222
Q ss_pred chHHHHHHH----hccCChhHHHHHHHHHHHhCCCCC--hhHHhHHHhHHHhcCCHHHHHHH--------HhhcCCC---
Q 039873 339 TFAVMLNSA----AGLSALRHGDLLHAHIEKSGFKEH--LIVGNALINMYAKGGNIEAANKV--------FSDMRYR--- 401 (709)
Q Consensus 339 t~~~ll~~~----~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~--------f~~~~~~--- 401 (709)
.-..+..++ .....++.|+-++..++..= +.+ ...|..+...--+-|+.....++ ++.+...
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 222223333 23445666666666666542 222 33444444444444543333222 2222222
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccccHHHHHHHHHHHHHhhCCC
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-------TFVGVLSAC---GHLGLVQEGFYYLNHLMKQIGIV 471 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~ 471 (709)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++..++ -++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcC
Confidence 4456666666666677777777777777664 455211 121111122 345667777777777654 233
Q ss_pred CChHHHHHHHHHH----HhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 472 PGLEHYTCIVGLL----SKAGLLDEAEKFMR-STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 472 p~~~~~~~li~~~----~~~g~~~~A~~~~~-~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
....++.-+--+| .|+.++..|.+++. .+|.-|..-++...|..-.+.++++....++++.++..|.+..++.-.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 3344554444444 36677777777765 446567777777777777777777777777777777777777777777
Q ss_pred HHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 547 SNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 547 ~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
+..=...|+++.|+.+|....+...
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 7777777777777777777766543
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=9.5e-10 Score=116.73 Aligned_cols=443 Identities=13% Similarity=0.063 Sum_probs=226.4
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH
Q 039873 96 QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNA 175 (709)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (709)
.||.+||..+|.-||..|+.+.|- +|..|+ -...+.+...|+.++.+....++.+.++ .|-..+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 477788888888888888888777 888887 6667777888888888888777777665 567778888
Q ss_pred HHHHHHhcCChHH---HHHHHhhCCC---------------------C-CcccHHHHHHHHHhCCCccHHHHHHHHHHhC
Q 039873 176 LVELYTKCLDVEM---AKRLLDLLPG---------------------Y-DVFEYNSVLNGLIENECFRGGVEVLGKMVSG 230 (709)
Q Consensus 176 li~~y~~~g~~~~---A~~~f~~~~~---------------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 230 (709)
|...|.+.||+.. .++.++.+.. | -...-...|.-.+-.|-++.+++++..|...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 8888888888654 1221111100 0 0000112223333344444444444444221
Q ss_pred CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCH----hhHH
Q 039873 231 SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV----VLWT 306 (709)
Q Consensus 231 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~ 306 (709)
.- +. ++..+++-+..... -.+++.......--.++..++.++++.-.-.|+++.|..++.+|.++.. .-+-
T Consensus 169 a~--~~-p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AW--NA-PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc--cc-hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 10 00 11112333332222 1222222222211136666666666666666666666666666665421 1122
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCC----hhHHhHHHhHH
Q 039873 307 AMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEH----LIVGNALINMY 382 (709)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~y 382 (709)
.++-| .++...+..+++-|.+.|+.|+..|+..-+..|.+.|....+.. |.+.+ ..++..+..+.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhhHHHHHHHhccc
Confidence 23222 55555666666666666666666666666655555443222211 11111 11222222211
Q ss_pred HhcCCHHH--HHHHHhhcC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHH-HHHHHHHHHhc
Q 039873 383 AKGGNIEA--ANKVFSDMR-------YRDIITWNAMICGYSHHGLGREALTLFQNMLAA--EERPNHV-TFVGVLSACGH 450 (709)
Q Consensus 383 ~~~g~~~~--A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~-t~~~ll~a~~~ 450 (709)
.....++. +.-+....+ +....+|... .-...+|+.++..++-..|..- .+.|+.+ .|..++.-|-+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 11111111 011111111 1122344333 3334478888888888877542 1334322 45444443322
Q ss_pred cc----------------------cHHHHHHHHHHHHHh---------------hCCCC-------ChHHHHHHHHHHHh
Q 039873 451 LG----------------------LVQEGFYYLNHLMKQ---------------IGIVP-------GLEHYTCIVGLLSK 486 (709)
Q Consensus 451 ~g----------------------~~~~a~~~~~~~~~~---------------~~~~p-------~~~~~~~li~~~~~ 486 (709)
.- +..+..+......+. ....| -...-+.++..+.+
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 11 011111111100000 00011 01123344445555
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC---CCchhHHHHHHHhhhcCCchhHHHHH
Q 039873 487 AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP---NDVGTYILLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 487 ~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~ 563 (709)
.-+..+++...++..-.-=...|..||.-|..|...+.|....+++...+. -+..-+..+.+.+.+.+...++..+.
T Consensus 472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 555555554332221000125678899999999999999999888776542 14457889999999999999999999
Q ss_pred HHHHh
Q 039873 564 KLMKV 568 (709)
Q Consensus 564 ~~m~~ 568 (709)
++|.+
T Consensus 552 ~e~ks 556 (1088)
T KOG4318|consen 552 YEDKS 556 (1088)
T ss_pred hhhhH
Confidence 99987
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.2e-08 Score=101.91 Aligned_cols=260 Identities=13% Similarity=0.058 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873 303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY 382 (709)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 382 (709)
...-.-..-+...+++.+..+++....+.. ++....+..-|..+...|+...-..+-..+++. .+....+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 333344455677899999999999988642 445555555666777888777666666666665 366778899998889
Q ss_pred HhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 039873 383 AKGGNIEAANKVFSDMRYRDI---ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY 459 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 459 (709)
.-.|+..+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999998774433 58999999999999999999999887763 22233344455667888999999999
Q ss_pred HHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--C---CCC----HHHHHHHHHHHHhcCCchHHHHHH
Q 039873 460 YLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRSTP--V---KWD----VVAWHTLLNASRVHQNYGFGRRIA 529 (709)
Q Consensus 460 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~ 529 (709)
+|.++. ++.|+ +.+.+-+.-+.-..+.+.+|..+|+..- + .+. ..+|+.|..+|++.+.+++|+..+
T Consensus 402 Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 402 FFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999874 56554 5567777777778899999999987431 1 111 345777888999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 530 EYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 530 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++.+.+.|.++.+|.+++-+|...|+++.|...|.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3.8e-09 Score=99.97 Aligned_cols=285 Identities=12% Similarity=0.089 Sum_probs=179.1
Q ss_pred CCCccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCChHH
Q 039873 214 NECFRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD---VFINSAMISMYGKCGKFSN 289 (709)
Q Consensus 214 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~ 289 (709)
+.++++|+++|-+|.+. .|. ..+-.++.+.+.+.|..+.|.++|..+.++.--+. ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 57899999999999874 222 23446777888999999999999999987632221 2345567788999999999
Q ss_pred HHHHHHhccCCCH---hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873 290 AKKVFEGLETRNV---VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS 366 (709)
Q Consensus 290 A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 366 (709)
|+.+|..+.+.+. ....-|+..|-+..+|++|++.-+++...+-.+..+ -|.-
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eIAq-------------------- 181 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EIAQ-------------------- 181 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HHHH--------------------
Confidence 9999999887444 455667899999999999999999888765444332 1111
Q ss_pred CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 039873 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR---DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVG 443 (709)
Q Consensus 367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 443 (709)
.|.-|...+....+.+.|..++.+..+. .+..--.+...+...|+++.|.+.++...+++..--..+...
T Consensus 182 -------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 182 -------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1122223333344555566666555432 222333344556666777777777777766432222335556
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh---c
Q 039873 444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF-MRSTPVKWDVVAWHTLLNASRV---H 519 (709)
Q Consensus 444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~pd~~~~~~ll~~~~~---~ 519 (709)
+..+|.+.|+.+++..++..+++. .++...-..|.+.-....-.++|... .+.+.-+|+...+.-|+..-.. .
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 666777777777777777766542 33333444455544444455555554 3445556777777777765433 2
Q ss_pred CCchHHHHHHHHHHh
Q 039873 520 QNYGFGRRIAEYILH 534 (709)
Q Consensus 520 g~~~~a~~~~~~~~~ 534 (709)
|.......+...|..
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 334444445555543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.9e-08 Score=96.37 Aligned_cols=246 Identities=15% Similarity=0.148 Sum_probs=123.5
Q ss_pred HHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC------CHhhHHHHHHHHHHcCC
Q 039873 244 GLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR------NVVLWTAMVAACFQNEY 317 (709)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~ 317 (709)
.++......+++.+-.......|++.+...-+-...++-...++++|+.+|+++... |..+|+.++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 344444455555555566666665555555444444455555666666666665542 233444333 222221
Q ss_pred HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873 318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD 397 (709)
Q Consensus 318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 397 (709)
.. +.++.+-...--+--..|...+.+-|+-.++-++|..+|+.+++.+ +....+++.+..-|....+...|.+.++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1111111110011122344444555555555555666665555554 33445555555555555555555555554
Q ss_pred cC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC
Q 039873 398 MR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG 473 (709)
Q Consensus 398 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 473 (709)
.. .+|-..|-.|..+|.-.+.+.=|+-.|++... ++| |...|..+...|.+.++.++|+..|..... .-..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccc
Confidence 44 23455555566666665555556666665555 344 344555555555666666666666555543 11223
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~ 498 (709)
...+..|.++|-+.++.++|...|.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455555566666666666555543
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=1.2e-08 Score=99.64 Aligned_cols=293 Identities=12% Similarity=0.053 Sum_probs=212.9
Q ss_pred HHHHHHh--CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 039873 207 VLNGLIE--NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC 284 (709)
Q Consensus 207 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 284 (709)
+..|..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.++-+..-.++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444444 689999999999977766554 3456777788889999999999999998875577888888899999999
Q ss_pred CChHHHHHHHHhcc---CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHH
Q 039873 285 GKFSNAKKVFEGLE---TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA 361 (709)
Q Consensus 285 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~ 361 (709)
|+.+.|..-.+++. .++..........|.+.|++.+...++.+|.+.|+--|+.. .++-
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~le- 228 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARLE- 228 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHHH-
Confidence 99999988877754 46788899999999999999999999999999886544321 1110
Q ss_pred HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873 362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH 438 (709)
Q Consensus 362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 438 (709)
..+++.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+-
T Consensus 229 ----------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 229 ----------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred ----------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 1122333333333333344444555555 235666667777788888888888888888887777772
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHH
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWDVVAWHTLLNASR 517 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd~~~~~~ll~~~~ 517 (709)
. .+-.+.+.++.+.-.+..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+ .....|+...|+-+..++.
T Consensus 299 ~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 299 C----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred H----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 2 23356677777777777777777666666 467778888888888888888877 3456778888888888888
Q ss_pred hcCCchHHHHHHHHHHh
Q 039873 518 VHQNYGFGRRIAEYILH 534 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~ 534 (709)
+.|+.+.|.+..++.+.
T Consensus 373 ~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 373 QLGEPEEAEQVRREALL 389 (400)
T ss_pred HcCChHHHHHHHHHHHH
Confidence 88888888888777664
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.1e-11 Score=87.42 Aligned_cols=50 Identities=30% Similarity=0.523 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039873 401 RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH 450 (709)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 450 (709)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.8e-09 Score=105.27 Aligned_cols=198 Identities=13% Similarity=0.062 Sum_probs=163.3
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
.....+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3356677788899999999999999997653 346688888999999999999999999998853 334567777888
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~ 524 (709)
.+...|++++|.+.+...............+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998763222334557778889999999999999998754 23343 6678888889999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888999999999999999999887754
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.7e-11 Score=86.33 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873 199 YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS 248 (709)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (709)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=1.5e-06 Score=89.93 Aligned_cols=486 Identities=12% Similarity=0.129 Sum_probs=309.8
Q ss_pred cchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 039873 30 VEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWY 109 (709)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 109 (709)
+..+..-+.....++++..-+..|+.++..=+.. ....+|...+...-..|-++-+.+++++..+-+...-+--|.-+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt--qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT--QHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH--hhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567777777788899999999998888653211 45567888888888889999999999988876666678888889
Q ss_pred HhCCChhHHHHHHHHhhhCCC------CCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC----CCchhHHHHHHHH
Q 039873 110 LHNGFLLETLKLFKNMVSGDN------LEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL----VFCKYVRNALVEL 179 (709)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~ 179 (709)
+..++.++|.+.+.... ... -+-+...|.-+-...++..+.-....+ +.+++.|+ +.-...|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vl-n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVL-NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhc-CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHH
Confidence 99999999999888876 221 123444566665555555443333322 22334443 2235689999999
Q ss_pred HHhcCChHHHHHHHhhCCCC--CcccHHHHHHHHHhC----------------CCc------cHHHHHHHHHHhCCC---
Q 039873 180 YTKCLDVEMAKRLLDLLPGY--DVFEYNSVLNGLIEN----------------ECF------RGGVEVLGKMVSGSV--- 232 (709)
Q Consensus 180 y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~----------------g~~------~~A~~l~~~m~~~g~--- 232 (709)
|.+.|.++.|..+|++.... .+.-++.+-+.|++- |+. +-.+.-|+.+...+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999999875432 222344444444321 211 122333343333211
Q ss_pred -------CC-ChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCC------chHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873 233 -------RW-DSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEP------DVFINSAMISMYGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 233 -------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 298 (709)
.| +..+|..-+. ...|+..+-...+.++++.- .| -...|..+...|-..|+++.|+.+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 01 1122222222 23466777778888887752 22 23468889999999999999999999976
Q ss_pred CC---C----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC-----------CCC------CccchHHHHHHHhccCChh
Q 039873 299 TR---N----VVLWTAMVAACFQNEYFEEALNLFCGMEYEA-----------IRP------NEFTFAVMLNSAAGLSALR 354 (709)
Q Consensus 299 ~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p------d~~t~~~ll~~~~~~~~~~ 354 (709)
+- . ...|......=.+..+++.|+++.++....- .++ +...|+..+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 52 2 2456666677778888999999887764211 111 1234555566666778999
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCCh-hhHHHHHHHHHH---cCChHHHHHHH
Q 039873 355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR----YRDI-ITWNAMICGYSH---HGLGREALTLF 426 (709)
Q Consensus 355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~~ 426 (709)
..+.+++.+++..+.....+.| ....+-....++++.+++++-. -|++ ..||+.+.-+.+ ..+.+.|..+|
T Consensus 495 stk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999887654333333 3334556777899999999755 3555 378887766554 23689999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH--hccccHHHHHHHHHHHHH--------------------hhCCCCChHHHHH-----
Q 039873 427 QNMLAAEERPNHVTFVGVLSAC--GHLGLVQEGFYYLNHLMK--------------------QIGIVPGLEHYTC----- 479 (709)
Q Consensus 427 ~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~--------------------~~~~~p~~~~~~~----- 479 (709)
++..+ |.+|...-+.-|+-|- -.-|....|..+++.+.. .+|+......|.-
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 99998 7778765444444331 233666666666665422 2344433333322
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCchH
Q 039873 480 -----------IVGLLSKAGLLDEAEKFMRST-P-VKW--DVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 480 -----------li~~~~~~g~~~~A~~~~~~~-~-~~p--d~~~~~~ll~~~~~~g~~~~ 524 (709)
..++=.+.|.++.|+.++.-- . ..| +...|.+.=.--.+|||-+.
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 223445668888888886522 1 123 47778877777788888433
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=5.6e-06 Score=85.83 Aligned_cols=488 Identities=13% Similarity=0.114 Sum_probs=317.1
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHH
Q 039873 67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQ-----RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIV 141 (709)
Q Consensus 67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l 141 (709)
-+.+|-.-+....++|++..-++.|++... .....|...|.-....+-++-++.+|++..+ +.| ..-.--
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P--~~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAP--EAREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCH--HHHHHH
Confidence 467888889999999999999999987642 2345699999888889999999999999872 344 335666
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCChH---HHHHHHhhCCCC--C--cccHHHHH
Q 039873 142 LSSCSRSGRGAEGRQCHGYVFKSG------LVFCKYVRNALVELYTKCLDVE---MAKRLLDLLPGY--D--VFEYNSVL 208 (709)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li 208 (709)
+.-++..+++++|.+.+..++... ...+...|.-+.+..++.-+.- ....++..+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777888999999999888876432 2556778888888877664432 345566666553 3 35799999
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----------------C------CcHHHHHHHHHHHHcC
Q 039873 209 NGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASL----------------K------DLKLGLQVHSQMLKSD 266 (709)
Q Consensus 209 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~g 266 (709)
+-|++.|.+++|.++|++-...-. ...-|+.+.++|+.- + +++....-++.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 999999999999999999766422 233344444444321 1 1223333444444322
Q ss_pred -----------CCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---------CCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 039873 267 -----------IEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---------RNVVLWTAMVAACFQNEYFEEALNLFC 326 (709)
Q Consensus 267 -----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (709)
-+.++..|..-+..| .|+..+-..+|.+... +-...|..+..-|-.+|+.+.|..+|+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 122333444444333 4566666677766542 123579999999999999999999999
Q ss_pred HHHhCCCCCC---ccchHHHHHHHhccCChhHHHHHHHHHHHh-----------CCCC------ChhHHhHHHhHHHhcC
Q 039873 327 GMEYEAIRPN---EFTFAVMLNSAAGLSALRHGDLLHAHIEKS-----------GFKE------HLIVGNALINMYAKGG 386 (709)
Q Consensus 327 ~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~li~~y~~~g 386 (709)
+..+...+-- ..+|..-...=.+..+++.|..+.+.+... +.++ +..+|..+++.--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9876433211 123333333344566788888877766431 1122 3446666777777899
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---ccccHHHHHH
Q 039873 387 NIEAANKVFSDMRYRDIITWNAMI---CGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACG---HLGLVQEGFY 459 (709)
Q Consensus 387 ~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~---~~g~~~~a~~ 459 (709)
-++....+++++.+--+.|=..++ ..+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+. ....++.|+.
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999998853332222222 23456677889999998765542345543 5555555433 2347899999
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHH----HhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCchHHHHHHHH
Q 039873 460 YLNHLMKQIGIVPGLEHYTCIVGLL----SKAGLLDEAEKFMRSTP--VKWD--VVAWHTLLNASRVHQNYGFGRRIAEY 531 (709)
Q Consensus 460 ~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~ 531 (709)
+|++..+ |.+|. +...+--+| -+.|....|++++++.. +++. ...||..|.--+..=-+.....++++
T Consensus 572 LFEqaL~--~Cpp~--~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 572 LFEQALD--GCPPE--HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHh--cCCHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 9999976 55554 333333334 35688999999998653 3333 55677777633332224456677777
Q ss_pred HHhcCCCCchhH--HHHHHHhhhcCCchhHHHHHHHHH
Q 039873 532 ILHMDPNDVGTY--ILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 532 ~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
+++.-|++-.-- .-.+++=.+.|..+.|+.++.--.
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 777766543222 234566667777777777776543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.3e-08 Score=94.73 Aligned_cols=218 Identities=13% Similarity=0.043 Sum_probs=158.9
Q ss_pred CCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHH
Q 039873 112 NGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVF---CKYVRNALVELYTKCLDVEM 188 (709)
Q Consensus 112 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~ 188 (709)
+..+++|+++|-+|. + +-+-+..+-.++-+.+.+.|..+.|..+|+.+.++.--+ .....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l-~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEML-Q-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHH-h-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 456788888888886 2 222233444556667777888888888888877653111 12234456677888999999
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCcHHHHHHHHH
Q 039873 189 AKRLLDLLPGYDV---FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSV----TYVNAFGLSASLKDLKLGLQVHSQ 261 (709)
Q Consensus 189 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 261 (709)
|+.+|..+.+... .....|+..|-+..+|++|++.-+++.+.+-.+..+ .|.-+........+++.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998876433 345668899999999999999999998876665533 345555555667788888888888
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873 262 MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV----VLWTAMVAACFQNEYFEEALNLFCGMEYEA 332 (709)
Q Consensus 262 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 332 (709)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|. .....|..+|.+.|+.++....+.++.+..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88765 44556666777888888999999999888887665 346667788888898888888888887654
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-07 Score=96.67 Aligned_cols=498 Identities=10% Similarity=-0.004 Sum_probs=299.0
Q ss_pred cchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHh--cCCCCCcchHHHHHH
Q 039873 30 VEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFD--NMRQRNVVSYSSLMT 107 (709)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~ 107 (709)
..-+..+++-+....++..|.-+-+.+...+.+ |+ ----+..+|.-.|..+.|-.+.. .+.+.|..+......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d---p~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTND---PA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC---hH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 344566666666666777777776666665533 33 33335666777777777766654 345678888888888
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 039873 108 WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVE 187 (709)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 187 (709)
.+.+...+++|+.++..-. +.-+.+.|-..=. +..-..+.+...+..-.+.++ .-.--..|......+
T Consensus 91 ~l~~lk~~~~al~vl~~~~----~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGH----VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHhcccc----hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHH
Confidence 8899999999998887221 1111111110000 000001111100000000100 000012233344555
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHhCC-CccHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHc
Q 039873 188 MAKRLLDLLPGYDVFEYNSVLNGLIENE-CFRGGVEVLGKMVSG-SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKS 265 (709)
Q Consensus 188 ~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (709)
+|+..|.+..-.|+..+.++...-...= -..+-.++|..+.-. -.+-+......+.........-+.....-.+..-.
T Consensus 159 ~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 159 EARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 6666555544444444433322111100 011112222211000 01112222222222110000000000000001112
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCH---hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH
Q 039873 266 DIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV---VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV 342 (709)
Q Consensus 266 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 342 (709)
+...+..+.....+-+-..+++.+..++++.+.+.|+ ..+..-|.++...|+..+-..+=.+|.+. .+-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 3355666677777788888999999999999887544 45555678899999988888888888865 2345688988
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 039873 343 MLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLG 419 (709)
Q Consensus 343 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 419 (709)
+.--|...|...+|++.+......+ +.-...|-.+...|+-.|.-+.|...+....+ .....+--+..-|.+.+..
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999998887654 33455677888889999999988887765442 1111222244457788899
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhC-CC----CChHHHHHHHHHHHhcCCHHHH
Q 039873 420 REALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG-IV----PGLEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~----p~~~~~~~li~~~~~~g~~~~A 493 (709)
+-|.+.|.+... +-|+ +..++-+.-..-+.+.+.+|..+|+....... +. ....+++.|..+|.+++++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999877 6664 55666665555667899999999998763111 11 1345688999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 494 EKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 494 ~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
+..+++. ... .|..++.++.-.+...|+++.|.+.|.+++.+.|+|..+-..|..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999853 233 468888889889999999999999999999999998655555443
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=7.2e-09 Score=108.64 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=167.2
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHHHh-----CC-CCChh-HHhHHHhHHHhcCCHHHHHHHHhhcCC----------
Q 039873 338 FTFAVMLNSAAGLSALRHGDLLHAHIEKS-----GF-KEHLI-VGNALINMYAKGGNIEAANKVFSDMRY---------- 400 (709)
Q Consensus 338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~---------- 400 (709)
.|...+...|...|+++.|.+.++..++. |. .+... ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777766653 21 12221 224466788888999988888887751
Q ss_pred C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhhCC--
Q 039873 401 R-DIITWNAMICGYSHHGLGREALTLFQNMLA-----AEERPNHV--TFVGVLSACGHLGLVQEGFYYLNHLMKQIGI-- 470 (709)
Q Consensus 401 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-- 470 (709)
| -..+++.|...|.+.|++++|..++++..+ .|..+..+ -++.+...|...+.+++|..+++...+.+.-
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 124777788889999999888888777653 23233222 4566677789999999999999988775542
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-
Q 039873 471 VPG----LEHYTCIVGLLSKAGLLDEAEKFMRST-------PV--KWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHM- 535 (709)
Q Consensus 471 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 535 (709)
.++ ..+++.|...|-+.|++++|++++++. .. .+. ...++.|..+|.+.++++.|.++|.....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999998743 11 122 456677888999999999999999886553
Q ss_pred ---CCC---CchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 536 ---DPN---DVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 536 ---~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
+|+ -..+|..|+-.|...|++++|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444 45678899999999999999999998876
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.4e-07 Score=93.07 Aligned_cols=433 Identities=14% Similarity=0.131 Sum_probs=239.9
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--hcC
Q 039873 109 YLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNA--LVELYT--KCL 184 (709)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~g 184 (709)
+.+.+++++|+..-.++. . +.+-|...+..=+-+..+.+.++.|..+. ...+. ..+++. +=.+|+ +.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil-~-~~pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKIL-S-IVPDDEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHHHHHHHH-h-cCCCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhhHHHHHHHHHcc
Confidence 444556666666666654 2 22334444555555555556666555322 12211 011111 123443 677
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039873 185 DVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQML 263 (709)
Q Consensus 185 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (709)
..++|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-... +. ..+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHH
Confidence 888888888855555554555566778888999999999999877654321 11222222221110 11 0112
Q ss_pred HcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHhc--------cCCC-----Hh-----hHHHHHHHHHHcCCHhHHHH
Q 039873 264 KSDIEPD--VFINSAMISMYGKCGKFSNAKKVFEGL--------ETRN-----VV-----LWTAMVAACFQNEYFEEALN 323 (709)
Q Consensus 264 ~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~ 323 (709)
.....|+ -..+-.....+...|++.+|+++++.. .+.| .. .---|.-.+...|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 2222221 112222344567788999998888776 2111 11 11223446678899999999
Q ss_pred HHHHHHhCCCCCCccchHHHHH---HHhccCChhH--HHHHHH-----------HHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873 324 LFCGMEYEAIRPNEFTFAVMLN---SAAGLSALRH--GDLLHA-----------HIEKSGFKEHLIVGNALINMYAKGGN 387 (709)
Q Consensus 324 ~~~~m~~~g~~pd~~t~~~ll~---~~~~~~~~~~--a~~i~~-----------~~~~~g~~~~~~~~~~li~~y~~~g~ 387 (709)
++...++.. .+|........+ +.....++-. ....++ ......-.....--+.++.+|. +.
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 999988764 445433222221 2222222111 011111 0010000112222345565554 45
Q ss_pred HHHHHHHHhhcCCCC-hhhHHHHH-HHHH-HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHH
Q 039873 388 IEAANKVFSDMRYRD-IITWNAMI-CGYS-HHGLGREALTLFQNMLAAEERPNH--VTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 388 ~~~A~~~f~~~~~~~-~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
.+.+.++-...+..- ...+.+++ .++. +...+.+|.+++...-+. .|+. +.....+.-....|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 667777777766422 22333333 3332 223577888888877663 4544 344444555678899999999998
Q ss_pred --------HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCchHH
Q 039873 463 --------HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS--------TPVKWD-VVAWHTLLNASRVHQNYGFG 525 (709)
Q Consensus 463 --------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~pd-~~~~~~ll~~~~~~g~~~~a 525 (709)
...+ .+..|. +..+++.+|.+.++-+.|..++.+ +.-++. ...|.-+..--.++|+.++|
T Consensus 401 ~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4322 344454 667788999988887666666442 222222 33444444455678999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
..+++++.+.+|++..+.+.++.+|++.. .+.|..+-+.+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 99999999999999999999999998764 45555554433
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.5e-07 Score=88.23 Aligned_cols=302 Identities=11% Similarity=-0.063 Sum_probs=206.9
Q ss_pred CChhhHHHHHHHHh--cCCCcHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHH--
Q 039873 234 WDSVTYVNAFGLSA--SLKDLKLGLQVHSQMLK-SDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAM-- 308 (709)
Q Consensus 234 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l-- 308 (709)
|+..+....+.+++ ..++-..+.+.+-.+.+ .-++.|+....++...|...|+.++|+..|++...-|+.+..+|
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 33334444444433 33444444454444443 34677888999999999999999999999998776555443333
Q ss_pred -HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873 309 -VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387 (709)
Q Consensus 309 -i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 387 (709)
.--+.+.|+++....+...+.... +-....|..-+...-..++++.|..+-+..++.+ +.+...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 334567888888888777776431 1122223223333445667777777777777654 3334444444456667899
Q ss_pred HHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cccHHHHHHHHH
Q 039873 388 IEAANKVFSDMR--Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVL-SACGH-LGLVQEGFYYLN 462 (709)
Q Consensus 388 ~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~ 462 (709)
.++|.--|+... . -+..+|.-|+..|...|+..+|.-+-+..... ++.+..++..+. ..|.. ...-++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 999999998765 3 47889999999999999999999887776553 344555555442 33322 233477888887
Q ss_pred HHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 463 HLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 463 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
+. ..+.|+ ....+.+...+.+.|+.+++..++++. ...||...-+.|...++..+.+.+|.+.|..++.++|++-
T Consensus 429 k~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 75 355676 456677888899999999999998753 4568888889999999999999999999999999999874
Q ss_pred h
Q 039873 541 G 541 (709)
Q Consensus 541 ~ 541 (709)
.
T Consensus 506 ~ 506 (564)
T KOG1174|consen 506 R 506 (564)
T ss_pred H
Confidence 3
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=9.7e-07 Score=93.40 Aligned_cols=405 Identities=12% Similarity=0.042 Sum_probs=257.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhh-HH
Q 039873 165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVT-YV 240 (709)
Q Consensus 165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 240 (709)
.+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-......|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4566888999999999999999999999998654 2445799999999999999999999988766544455444 44
Q ss_pred HHHHHHh-cCCCcHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhcC-----------ChHHHHHHHHhccC-----
Q 039873 241 NAFGLSA-SLKDLKLGLQVHSQMLKS--DI--EPDVFINSAMISMYGKCG-----------KFSNAKKVFEGLET----- 299 (709)
Q Consensus 241 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~~~~m~~----- 299 (709)
..-..|. +.+..+++..+-..++.. +. ......+-.+.-+|...- ...++...+++..+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 456777777666666652 11 122334444444443221 12345555555533
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh-CCCCChhHHhHH
Q 039873 300 RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS-GFKEHLIVGNAL 378 (709)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~l 378 (709)
+++..|- .--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... |. |-.....-
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 2333332 3346677788999999988887755666777777777778888888888888776642 21 10000011
Q ss_pred HhHHHhcCCHHHHHHHH-------h-------------------hcC-----CCChh-hHHHHHHHHHHcCChHHHHHHH
Q 039873 379 INMYAKGGNIEAANKVF-------S-------------------DMR-----YRDII-TWNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f-------~-------------------~~~-----~~~~~-~~~~li~~~~~~g~~~~A~~~~ 426 (709)
+..-..-++.++|.... + .+. ..|.. ++.-+ .+... -+.+.+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhccccc
Confidence 11111234444443322 2 111 01111 22221 11111 1111110000
Q ss_pred HHHHHCCCCC--CH------HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873 427 QNMLAAEERP--NH------VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFM 497 (709)
Q Consensus 427 ~~m~~~g~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 497 (709)
. |...-+.| +. ..|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 11111222 21 123445566788888899987777764 3333 3556777778889999999999987
Q ss_pred H-hCCCCCC-HHHHHHHHHHHHhcCCchHHHH--HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCcc
Q 039873 498 R-STPVKWD-VVAWHTLLNASRVHQNYGFGRR--IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKK 573 (709)
Q Consensus 498 ~-~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 573 (709)
. ...+.|| +.+..++...+.+.|+...|.. +...+++++|.++..|..|+.++.+.|+.++|.+.|....+-.- .
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S 786 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-S 786 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-C
Confidence 6 5567787 7778888889999999888888 99999999999999999999999999999999999999876432 2
Q ss_pred CCceeEE
Q 039873 574 EPGSSWT 580 (709)
Q Consensus 574 ~~~~s~~ 580 (709)
.|..+|.
T Consensus 787 ~PV~pFs 793 (799)
T KOG4162|consen 787 NPVLPFS 793 (799)
T ss_pred CCccccc
Confidence 3434444
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=3e-07 Score=90.12 Aligned_cols=290 Identities=11% Similarity=0.029 Sum_probs=181.5
Q ss_pred CCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 039873 112 NGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKR 191 (709)
Q Consensus 112 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (709)
.|++..|.++..+-. +.+-.| ...|.....+.-..|+.+.+-+++.++-+..-+++..+.-+........|+.+.|+.
T Consensus 97 eG~~~qAEkl~~rna-e~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNA-EHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhh-hcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 477888888777755 444333 334555556666777788887777777776445666666666777777777777766
Q ss_pred HHhhC---CCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC
Q 039873 192 LLDLL---PGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE 268 (709)
Q Consensus 192 ~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 268 (709)
-.++. ..++..........|.+.|++.+...++.+|.+.|.--|+.. .++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 66543 335666677777777777777777777777777665433220 000
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873 269 PDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345 (709)
Q Consensus 269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 345 (709)
...+++.+++-....+..+.-...+++.+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -..+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHH
Confidence 112344444433333344444445555553 2455555666777777788888887777777666665 12223
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHH
Q 039873 346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREAL 423 (709)
Q Consensus 346 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 423 (709)
.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 3455555555555544444332 3444677778888888888888888888654 467778888888888888888888
Q ss_pred HHHHHHHHCCCCC
Q 039873 424 TLFQNMLAAEERP 436 (709)
Q Consensus 424 ~~~~~m~~~g~~p 436 (709)
+.+++....-.+|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 8877765433333
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=1.4e-07 Score=99.20 Aligned_cols=234 Identities=13% Similarity=0.132 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccC----------CCHh-hHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCc-
Q 039873 273 INSAMISMYGKCGKFSNAKKVFEGLET----------RNVV-LWTAMVAACFQNEYFEEALNLFCGMEYE---AIRPNE- 337 (709)
Q Consensus 273 ~~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~- 337 (709)
+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... ..-++.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 333355555555555555555544321 1111 2233455666666666666666666431 112222
Q ss_pred ---cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh---cCCCChh-hHHHHH
Q 039873 338 ---FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD---MRYRDII-TWNAMI 410 (709)
Q Consensus 338 ---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~-~~~~li 410 (709)
.|+..|-.+|.+.|++++|+...+.+.+. +++ ...+.+. ..+.++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHHH
Confidence 23444445566677777666665554431 111 0011111 223333
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhh----C-CCCC-hHHH
Q 039873 411 CGYSHHGLGREALTLFQNMLAA---EERPNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQI----G-IVPG-LEHY 477 (709)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~ 477 (709)
..+...+++++|..++++..+. -..++. .+++.+...+-+.|.+++|.++|+++++.. | ..+. ..++
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 4444445555555544443321 122222 356666666777777777777777665532 1 1111 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873 478 TCIVGLLSKAGLLDEAEKFMRST--------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
+-|...|.+.+++++|.++|.+. +-.|+ ..+|..|...|...|+++.|+++.+++..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66777777777777777665432 12355 67888999999999999999999998874
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=5.3e-08 Score=107.24 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=172.1
Q ss_pred CHhHHHHHHHHHHhCCCCCCcc-chHHHHHHHh---------ccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC
Q 039873 317 YFEEALNLFCGMEYEAIRPNEF-TFAVMLNSAA---------GLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG 386 (709)
Q Consensus 317 ~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 386 (709)
..++|+++|++..+. .|+.. .+..+..++. ..++.++|...++.+++.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356788888887754 45443 2333322222 2345788888888888875 556778888888999999
Q ss_pred CHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHH
Q 039873 387 NIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 387 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
++++|...|++..+ | +...|..+...|...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 3 456788899999999999999999999998 456543 33334445666899999999999
Q ss_pred HHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 463 HLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 463 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
.+.+. ..| +...+..+...|...|++++|.+.+++. +..|+ ...++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 87653 234 3445777888999999999999998875 23344 444555666667777 47888788777643222
Q ss_pred chhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 540 VGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+..+..+...|+-.|+-+.+..+ +++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22233366778888888877777 777654
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.6e-06 Score=83.36 Aligned_cols=157 Identities=11% Similarity=0.044 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH-HHHHHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT-CIVGLL 484 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~ 484 (709)
-.+|.+.+.-..++++.+-++.....- +..|..--..+..|.+..|.+.+|.++|-.+.. -.+ .+..+|. .|...|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHH
Confidence 344555555555667777666666554 233333333466788888999999998876522 122 3444554 456788
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873 485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLL-NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 563 (709)
.++|.++-|+++|-++....+..+.-.+| .-|.+.+.+--|-++|..+..++|. +..| .|+-.-...+|
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW---------eGKRGACaG~f 508 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW---------EGKRGACAGLF 508 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------CCccchHHHHH
Confidence 99999999999988876444555554444 4788888888888999998888874 2222 34445555666
Q ss_pred HHHHhCCCccCC
Q 039873 564 KLMKVRKVKKEP 575 (709)
Q Consensus 564 ~~m~~~~~~~~~ 575 (709)
..+..+.-++.|
T Consensus 509 ~~l~~~~~~~~p 520 (557)
T KOG3785|consen 509 RQLANHKTDPIP 520 (557)
T ss_pred HHHHcCCCCCCc
Confidence 666554444444
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=6.9e-06 Score=88.99 Aligned_cols=465 Identities=14% Similarity=0.137 Sum_probs=270.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCC--CCcchHHHH-----HHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 039873 71 TNSLVNLYAKCNQISIARQLFDNMRQ--RNVVSYSSL-----MTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLS 143 (709)
Q Consensus 71 ~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~ 143 (709)
+..+.+.+.|.|-...|++.|..+.. |.++ .+.+ +..|.-.-.++++++.++.|. ..+++.|..+...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml-~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAML-SANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence 45566777888888888888877653 2222 1221 234555557888899999998 7777777766655555
Q ss_pred HHhcCCCchHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--------------
Q 039873 144 SCSRSGRGAEGRQCHGYVFK-----------SGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG-------------- 198 (709)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------------- 198 (709)
-|...--.+...++|+.... ..+..|+.+.-..|.+-++.|++.+.+++.++-..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 55443333333444443322 12456777778889999999999998888765321
Q ss_pred -----------------CCcccH------HHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-----------hhhHHHHHH
Q 039873 199 -----------------YDVFEY------NSVLNGLIENECFRGGVEVLGKMVSGSVRWD-----------SVTYVNAFG 244 (709)
Q Consensus 199 -----------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~ 244 (709)
+|.+.| --.|..|++.=++...-.+...++.....-| .+...-+..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 011111 1234555555444443333333332111100 011122333
Q ss_pred HHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH------------------------------------
Q 039873 245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFS------------------------------------ 288 (709)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~------------------------------------ 288 (709)
-+-+.+++..-...++..+..| ..|..++|+|...|...++-.
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 4445556666666777777777 557778888877665433211
Q ss_pred ----------------HHHHHHHhcc-----------------------------CCCHhhHHHHHHHHHHcCCHhHHHH
Q 039873 289 ----------------NAKKVFEGLE-----------------------------TRNVVLWTAMVAACFQNEYFEEALN 323 (709)
Q Consensus 289 ----------------~A~~~~~~m~-----------------------------~~~~~~~~~li~~~~~~g~~~~A~~ 323 (709)
.|+-+.+++. ..|+..-+.-+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 1111111110 0123333444566667777777778
Q ss_pred HHHHHHhCCCCCCc-cch-HHHHHHHhccCChhHHHHHHHHHHHhC-----------------------CCCChhHHhHH
Q 039873 324 LFCGMEYEAIRPNE-FTF-AVMLNSAAGLSALRHGDLLHAHIEKSG-----------------------FKEHLIVGNAL 378 (709)
Q Consensus 324 ~~~~m~~~g~~pd~-~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~g-----------------------~~~~~~~~~~l 378 (709)
+++++.-..-..+. ... +.++-...+ .+.....++.+.+-..+ +..+....+.|
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 88777632211110 111 111111111 11111111111111111 11122222222
Q ss_pred HhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873 379 INMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF 458 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 458 (709)
|+ ..+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.
T Consensus 1085 ie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 21 2234444444444433 3357999999999999999999887542 35678999999999999999999
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 459 YYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 459 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
.++....+ ..-+|.+ -+.||-+|++.+++.|-++++. -||..-......-|...|.++-|+-++..
T Consensus 1154 ~yL~MaRk-k~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1154 KYLLMARK-KVREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred HHHHHHHH-hhcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence 99887655 4667764 4679999999999999988874 36777778888889999999998888765
Q ss_pred CchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873 539 DVGTYILLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 565 (709)
.+.|..|+..+...|.+.-|...-++
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567777777777777766654443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=1.7e-07 Score=91.11 Aligned_cols=198 Identities=10% Similarity=0.045 Sum_probs=102.3
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873 302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN 380 (709)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 380 (709)
...+..+...|...|++++|.+.|++..+.. |+ ...+..+...+...|+++.|...+....+.. +.+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~------- 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD------- 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH-------
Confidence 4567777888888888888888888876542 32 2334444444555555555555555554433 22233
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHH
Q 039873 381 MYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFY 459 (709)
Q Consensus 381 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 459 (709)
.+..+...+...|++++|.+.|++.......| +...+..+...+...|++++|..
T Consensus 101 ------------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 101 ------------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred ------------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444455555555555555554422111 12233344444555555555555
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
.+....+. .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.+.|....+.+.+.
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55554432 1112334555555555566666665555432 11 123444444555555566666666665555443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=1e-07 Score=95.93 Aligned_cols=189 Identities=14% Similarity=0.035 Sum_probs=113.4
Q ss_pred hHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 039873 373 IVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSAC 448 (709)
Q Consensus 373 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~ 448 (709)
..+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3455566667777777777777776542 3456777777777777777777777777776 4554 44666666667
Q ss_pred hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-P-VKWDVVAWHTLLNASRVHQNYGFGR 526 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~pd~~~~~~ll~~~~~~g~~~~a~ 526 (709)
...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. . ..|+ .|.. .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~-~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW-NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH-HHHHHHccCCCHH-
Confidence 7777777777777776543 343221122222334556777777777532 1 1222 2321 1122234554443
Q ss_pred HHHHHHH-------hcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 527 RIAEYIL-------HMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 527 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
+.++.+. ++.|..+.+|..++.+|.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 3345556678888888888888888888888776543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=98.92 E-value=1.5e-07 Score=103.60 Aligned_cols=209 Identities=11% Similarity=-0.026 Sum_probs=160.6
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHH---------hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYA---------KGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLG 419 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 419 (709)
++++|.+.++.+++.. +.+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578889999888764 334555666655544 23458899999998764 3667888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 039873 420 REALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAEKFM 497 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 497 (709)
++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+.+. .|+. ..+..+...+...|++++|.+.+
T Consensus 355 ~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998 4565 457777888899999999999999998654 4442 22333445577789999999998
Q ss_pred HhCC--CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 498 RSTP--VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 498 ~~~~--~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++.- ..|+ +..+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7652 1354 5556777778889999999999999998888887777778888888888 588887877765
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=8.8e-06 Score=86.40 Aligned_cols=437 Identities=14% Similarity=0.054 Sum_probs=263.0
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-ChhhHHHH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEP-NEYIFSIV 141 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~l 141 (709)
.++.+|..|.-++..+|+++.+-+.|++... .....|+.+-..|...|....|+.+++.-. ...-.| |...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~-~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL-KKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc-ccccCCCcchHHHHH
Confidence 5788999999999999999999999987653 345579999889999999889999988765 222224 44444444
Q ss_pred HHHHh-cCCCchHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 039873 142 LSSCS-RSGRGAEGRQCHGYVFKSG--L--VFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENEC 216 (709)
Q Consensus 142 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 216 (709)
-+.|. +.+..++|..+-..++... . ......+-.+--+|+.. .....+|.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~--------------A~~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ--------------ARQANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH--------------hhcCCChHH------HHHH
Confidence 45554 4466777766666665521 0 01111122222222110 011111111 1112
Q ss_pred ccHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 039873 217 FRGGVEVLGKMVSG-SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFE 295 (709)
Q Consensus 217 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 295 (709)
..++++.+++.++. +-.|+..-|.++- ++..++++.|.+...+.++.+-..+...|..|.-.+.-.+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 35677777777653 3345444444443 55677888898888888888667788888888888888888999988887
Q ss_pred hccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCccchHHHHHHHhccCChhHHHHHHHHHH--HhCC
Q 039873 296 GLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYE--AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE--KSGF 368 (709)
Q Consensus 296 ~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~g~ 368 (709)
...+. |.+....-|..-..-++.++|+.....+... ...+-..+.. .|.. .+....+. ....
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~---~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKL---LRLKAGLHLALSQP 606 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhh---hhhhcccccCcccc
Confidence 75532 2221112222233356777777766666431 0000000000 0000 00100000 0000
Q ss_pred CCChhHHhHHHhHHH---hcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H
Q 039873 369 KEHLIVGNALINMYA---KGGNIEAANKVFSDMRYRD------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-H 438 (709)
Q Consensus 369 ~~~~~~~~~li~~y~---~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~ 438 (709)
.....++..+..... +.-..+..+..+...+.|+ ...|......+.+.+..++|...+.+... +.|- .
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~ 684 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSA 684 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhH
Confidence 111122222211111 1111111222222222333 23566777888889999999988888876 4443 3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHH--HHH-hCCCCCC-HHHHHHHH
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEK--FMR-STPVKWD-VVAWHTLL 513 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~-~~~~~pd-~~~~~~ll 513 (709)
..|......+...|..++|.+.|... .-+.|+ +....++..++.+.|+..-|.. ++. ...+.|+ ...|-.|.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 45555555667788999999999876 356665 5678899999999998777766 654 3455564 88999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 514 NASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
..+.+.|+.+.|-+.|..+.++++.+|.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999876653
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.8e-06 Score=86.70 Aligned_cols=338 Identities=13% Similarity=0.018 Sum_probs=203.8
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhc
Q 039873 207 VLNGLIENECFRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD-VFINSAMISMYGKC 284 (709)
Q Consensus 207 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~ 284 (709)
.-+-|.++|.+++|++.|.+..+ ..|| ++.|...-.+|...|+++++.+--...++. .|+ +..+..-..++-+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 34567788888888888888876 4677 666777777778888888887777666654 333 44555566677777
Q ss_pred CChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHH--------HHHHh-C--CCCCCccchHHHHHHHhccCCh
Q 039873 285 GKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLF--------CGMEY-E--AIRPNEFTFAVMLNSAAGLSAL 353 (709)
Q Consensus 285 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~--g~~pd~~t~~~ll~~~~~~~~~ 353 (709)
|++++|..= +|-..+..+|..+.-.--+.+++ ++-.. . .+-|......+....+...-..
T Consensus 197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 777776532 12222223322222222222222 22122 1 1234433333333332110000
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc-CCHHHHHHHHhhc-------CCCC---------hhhHHHHHHHHHHc
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKG-GNIEAANKVFSDM-------RYRD---------IITWNAMICGYSHH 416 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~-------~~~~---------~~~~~~li~~~~~~ 416 (709)
.+...+-+.|...-..+=..|... ..+..|...+.+- ...+ ..+.+.-..-+.-.
T Consensus 268 --------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 268 --------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred --------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 000000001111111111111110 1222333222211 1111 11222222234556
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
|+.-.|.+-|+..+.....++.. |.-+..+|....+.++.+..|+...+-..- +..+|-.-..++.-.+++++|..=
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHHH
Confidence 88899999999998854333332 777777889999999999999988653233 345777777888888999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 497 MRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 497 ~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
|++. .+.|+ ...+-.+.-+..+.+.+++++..|+...+.-|.-+..|+..+.++..++++++|.+.++...+
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 8854 45565 566666666666777999999999999999999999999999999999999999999998876
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.6e-05 Score=83.34 Aligned_cols=460 Identities=13% Similarity=0.097 Sum_probs=235.2
Q ss_pred CCCCchhHHHHHHHHHHh-------cCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 039873 42 DSKDLKLGKVIHAHLIIT-------TESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGF 114 (709)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 114 (709)
..|++..++.+|+...-. |-+ ..+.+-..+++.++. .++.+|..+|-+-. + -..-|..|....+
T Consensus 502 ai~dvak~r~lhd~~eiadeas~~~ggd--gt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhk 572 (1636)
T KOG3616|consen 502 AIGDVAKARFLHDILEIADEASIEIGGD--GTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHK 572 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhCCC--CchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHh
Confidence 345555666666543211 111 023333344444444 35777877775421 1 2234566666677
Q ss_pred hhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 039873 115 LLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLD 194 (709)
Q Consensus 115 ~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 194 (709)
+++|+.+-+.. |.+.-...-.+.+.++...|+-+.|-++ ..+.--..+-|..|.+.|....|.+...
T Consensus 573 wde~i~lae~~----~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~ 639 (1636)
T KOG3616|consen 573 WDEAIALAEAK----GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAAL 639 (1636)
T ss_pred HHHHHHHHHhc----CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhc
Confidence 88888775532 2222222234445566666665555432 1122223456889999999888877653
Q ss_pred h--CCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchH
Q 039873 195 L--LPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF 272 (709)
Q Consensus 195 ~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 272 (709)
. ....|......+..++++..-+++|=++|+++.. +...+..+.+-..+.+|.++-+.. ++..++
T Consensus 640 n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv 706 (1636)
T KOG3616|consen 640 NDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVV 706 (1636)
T ss_pred CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHh
Confidence 2 2224555566666777777777777777777643 222333333333334444333221 111111
Q ss_pred HH-HHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC
Q 039873 273 IN-SAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS 351 (709)
Q Consensus 273 ~~-~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 351 (709)
.. ..-..-+...|+++.|..-|-+... .---|.+-.....|.+|+.+++.++... .-..-|..+...|++.|
T Consensus 707 ~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 707 KLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKG 779 (1636)
T ss_pred hHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccch
Confidence 10 1111222334444555444433210 0112333344555666666665555432 12233445555566666
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCC-----------
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR--DIITWNAMICGYSHHGL----------- 418 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~----------- 418 (709)
+++.|+++|... ..++--|+||.+.|++++|.++-.+...| ...+|-+-..-+-.+|+
T Consensus 780 dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 780 DFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred hHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 666665555332 12334455666666666666655554433 22333333333444444
Q ss_pred ---------------hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873 419 ---------------GREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV 481 (709)
Q Consensus 419 ---------------~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 481 (709)
.+..+++.++ ..|| ..|-..+..-+-..|++..|...|-+.- -|.+-+
T Consensus 851 ~~p~~aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaav 915 (1636)
T KOG3616|consen 851 GEPDKAIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAV 915 (1636)
T ss_pred cCchHHHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHH
Confidence 4444333332 2233 2355555666667788888877765542 367888
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHH------HHHHhcCCchHHHH-------------HHHHHHhcCCC
Q 039873 482 GLLSKAGLLDEAEKFMRSTPVK----WDVVAWHTLL------NASRVHQNYGFGRR-------------IAEYILHMDPN 538 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~----pd~~~~~~ll------~~~~~~g~~~~a~~-------------~~~~~~~~~p~ 538 (709)
++|-.++.|++|.++-+.-+-. .-...|.--| ..+.+||-++.|.. +.+-..+-.
T Consensus 916 nmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-- 993 (1636)
T KOG3616|consen 916 NMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-- 993 (1636)
T ss_pred HHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--
Confidence 9999999999999987654321 1133443222 12334554444443 333222222
Q ss_pred CchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 539 DVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
-+....-+..-+...|++++|-+-+-+..+.
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 2345667777888999999998877666543
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=6.8e-08 Score=91.55 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=159.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc
Q 039873 306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG 385 (709)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 385 (709)
+-|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+....+.|..++.+-++. ++.++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45666777777777777777666654 344445555666666666666666666655543 233444444555566666
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 386 GNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 386 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+.+|+++.+.|+. +...|..+.-.|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777788887776653 35556666677788888888888888888888743 45566677767777777777766666
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873 463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 542 (709)
..... .-.|+ + -..+|-.|......-||+..|.+.|+-.+..+|++...
T Consensus 383 RAlst-at~~~------------------~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------Q------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------h------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 55331 11111 1 14556666666667799999999999999999999999
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 543 YILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 543 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
++.|+-.-.+.|++++|+.+++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999887643
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.9e-05 Score=80.13 Aligned_cols=443 Identities=14% Similarity=0.097 Sum_probs=258.7
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHH--HHHHH-
Q 039873 34 LKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSL--MTWYL- 110 (709)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l--i~~~~- 110 (709)
.+=++.....+.+++|.+....++..+.. +....-.=+-++.+.+++++|.++.+.-..- .+++.. =.+||
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pd----d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPD----DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCC----cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 33455566788999999999999987754 5666666666788899999999776654421 222222 44554
Q ss_pred -hCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHH
Q 039873 111 -HNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLV-FCKYVRNALVELYTKCLDVEM 188 (709)
Q Consensus 111 -~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~ 188 (709)
+.+..++|+..+.... +.|..+...-...|.+.+++++|..++..+.+.+.+ .|...-..++.+-. .-.
T Consensus 90 Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQ 160 (652)
T ss_pred HHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhh
Confidence 6789999999988443 123446666667788999999999999999988742 22222222322211 111
Q ss_pred HHHHHhhCCCCCcccHHHH---HHHHHhCCCccHHHHHHHHHHhCC-------------CCCChhh-HHHHHHHHhcCCC
Q 039873 189 AKRLLDLLPGYDVFEYNSV---LNGLIENECFRGGVEVLGKMVSGS-------------VRWDSVT-YVNAFGLSASLKD 251 (709)
Q Consensus 189 A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~~~~~~~~ 251 (709)
+. +.+..+.....+|..+ .-.++..|++.+|+++++...+.+ +.-+..+ -..+.-.+-..|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 3555555444455444 345677999999999999883211 1111111 1223334567899
Q ss_pred cHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCChH-HHHHHHHhccCCCHhh--------------H-HHHHHH
Q 039873 252 LKLGLQVHSQMLKSDIEPDV----FINSAMISMYGKCGKFS-NAKKVFEGLETRNVVL--------------W-TAMVAA 311 (709)
Q Consensus 252 ~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~~~--------------~-~~li~~ 311 (709)
.++|.+++...++.. .+|. ...|.|+.+-....-++ .++..|+......... . +.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 3343 23344443322111111 3344444433222111 1 222222
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHH
Q 039873 312 CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS--ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIE 389 (709)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 389 (709)
|. +..+.+.++-.... +..|. +.+.+++..+.... ....+..++....+..-.-...+.-.++......|+++
T Consensus 319 ~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred Hh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 22 22233333322221 12222 34455555543322 34455555555544432333556667778888889999
Q ss_pred HHHHHHh--------hcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHH----Hhcccc
Q 039873 390 AANKVFS--------DMRY--RDIITWNAMICGYSHHGLGREALTLFQNMLAA--EERPNHVTFVGVLSA----CGHLGL 453 (709)
Q Consensus 390 ~A~~~f~--------~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~a----~~~~g~ 453 (709)
.|.+++. .+.+ .-+.+-.++...|.+.++.+.|..++.+.... .-.+......+++.- -.+.|.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9988888 4432 23344455666677777766677776665431 123333444444332 345688
Q ss_pred HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 039873 454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP 501 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 501 (709)
-++|...++++.+ -..+|..+...+|.+|++. +.+.|..+-+.++
T Consensus 474 ~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 474 EEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 8999999998876 3467788888899888875 5777887766664
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=2.7e-07 Score=83.85 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVG 482 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 482 (709)
+...|..+|.+.|++..|..-+++.++ +.|+. .++..+...|.+.|..+.|.+.|+..++ +.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 345567788888888888888888888 45654 4788888888888888888888888764 3443 457788888
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873 483 LLSKAGLLDEAEKFMRSTPVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG 558 (709)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 558 (709)
-++..|++++|...|+..-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88888999999988886543444 66788888777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 039873 559 VSKIRKLMKVRKV 571 (709)
Q Consensus 559 a~~~~~~m~~~~~ 571 (709)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=3e-06 Score=81.44 Aligned_cols=189 Identities=13% Similarity=0.070 Sum_probs=119.1
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 039873 377 ALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGL-------GREALTLFQNMLAAEERPNHV-TFVGVLSAC 448 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~ 448 (709)
.|+-.|.+.+++++|..+.+++....+.-|-.-...++..|+ ..-|.+.|+-.-+++..-|.+ --.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455578889999999999888765444333322223333332 344555555444444444433 123344444
Q ss_pred hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH-HhcCCchHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV-K-WDVVAWHTLLNAS-RVHQNYGFG 525 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-pd~~~~~~ll~~~-~~~g~~~~a 525 (709)
--.-.+++.+.++..+.. +=...|...+ .+..+++..|++.+|+++|-...- + .|..+|.+++.-| .+.+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 555678888888887643 4445555554 478889999999999999765421 1 3677888777655 556677776
Q ss_pred HHHHHHHHhcC-CCCc-hhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 526 RRIAEYILHMD-PNDV-GTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 526 ~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
-. .+++.+ |.+. +....+++-|.+++.+=-|.+.|+.+...+
T Consensus 448 W~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 448 WD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 54 455555 3332 234466788999999999999998887543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=8.8e-07 Score=89.27 Aligned_cols=216 Identities=11% Similarity=-0.078 Sum_probs=137.9
Q ss_pred CHhHHHHHHHHHHhCC-CCCCc--cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHH
Q 039873 317 YFEEALNLFCGMEYEA-IRPNE--FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANK 393 (709)
Q Consensus 317 ~~~~A~~~~~~m~~~g-~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 393 (709)
..+.++.-+.+++... ..|+. ..|......+...|+.+.|...+..+++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 12211 224444445556666666666666666654 4456778888888889999999999
Q ss_pred HHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC
Q 039873 394 VFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI 470 (709)
Q Consensus 394 ~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 470 (709)
.|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8888753 3 456788888888899999999999999888 456543222222223456789999999976543 23
Q ss_pred CCChHHHHHHHHHHHhcCCHHH--HHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 471 VPGLEHYTCIVGLLSKAGLLDE--AEKFMRS-TPV----KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~-~~~----~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
.|+...+ .++..+ .|++.+ +.+.+.+ ... .| ....|..+...+...|++++|+..|+++++.+|++.
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3443222 333333 454433 3333321 111 12 245788899999999999999999999999997553
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=3.4e-05 Score=81.00 Aligned_cols=217 Identities=16% Similarity=0.203 Sum_probs=145.5
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHH
Q 039873 311 ACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEA 390 (709)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 390 (709)
.+.+.|+++.|+.-|-+.. .....+.+......+.+|..|++.+.... .-..-|..+.+-|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 3444555555555543322 12234455566677888888888777653 223446677888999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC
Q 039873 391 ANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI 470 (709)
Q Consensus 391 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 470 (709)
|.++|.+.. .++--|..|.+.|++++|.++-.+.. |.......|..-..-.-..|.+.+|.+++-.+ |
T Consensus 784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~- 851 (1636)
T KOG3616|consen 784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G- 851 (1636)
T ss_pred HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-
Confidence 999997654 45667888999999999988876542 22333445555555567778888887776442 2
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 471 VPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
.|+ .-|.+|-+.|..++.+++..+-. || ..+-.-+..-+...|++..|+.-|-++ .-|-.-++
T Consensus 852 ~p~-----~aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavn 916 (1636)
T KOG3616|consen 852 EPD-----KAIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVN 916 (1636)
T ss_pred Cch-----HHHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHH
Confidence 344 34778888898888888887653 44 345555666677788888887665443 34667788
Q ss_pred HhhhcCCchhHHHHHHH
Q 039873 549 MYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 549 ~~~~~g~~~~a~~~~~~ 565 (709)
+|-..+.|++|.++-+.
T Consensus 917 myk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 917 MYKASELWEDAYRIAKT 933 (1636)
T ss_pred HhhhhhhHHHHHHHHhc
Confidence 89999999998887654
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=0.00016 Score=75.55 Aligned_cols=453 Identities=14% Similarity=0.097 Sum_probs=257.6
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHH
Q 039873 33 TLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWY 109 (709)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 109 (709)
|-..++ |-..+.+..++.....+++.-.. ...+.....-.+...|+-++|......-.. +..++|..+--.+
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k~~e----HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKKFPE----HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHhCCc----cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 334444 33556677778777777773222 222222222335567899999888876654 4567899888888
Q ss_pred HhCCChhHHHHHHHHhhhCCCCCCChh-hHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 039873 110 LHNGFLLETLKLFKNMVSGDNLEPNEY-IFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEM 188 (709)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (709)
....++++|++.|.... .+.||.. .+.-+--.-++.++++.... +.+.++.
T Consensus 86 R~dK~Y~eaiKcy~nAl---~~~~dN~qilrDlslLQ~QmRd~~~~~~---------------tr~~LLq---------- 137 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNAL---KIEKDNLQILRDLSLLQIQMRDYEGYLE---------------TRNQLLQ---------- 137 (700)
T ss_pred hhhhhHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHHHhhhhHHH---------------HHHHHHH----------
Confidence 88899999999999876 2445432 22222211122233322222 2222211
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCCChhhHHHHH------HHHhcCCCcHHHHHHHHH
Q 039873 189 AKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGS-VRWDSVTYVNAF------GLSASLKDLKLGLQVHSQ 261 (709)
Q Consensus 189 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~ 261 (709)
........|....-++.-.|+...|..+.++..+.. -.|+...|.... ....+.|.++.+.+.+..
T Consensus 138 -------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 138 -------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred -------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 111244568888888888888888888888887654 245555553322 233456777777665544
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC--CHhhHHHH-HHHHHHcCCHhHHH-HHHHHHHhCCCCCCc
Q 039873 262 MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR--NVVLWTAM-VAACFQNEYFEEAL-NLFCGMEYEAIRPNE 337 (709)
Q Consensus 262 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g~~pd~ 337 (709)
-... +......--.-.+.+.+.+++++|..++..+..+ |.+-|+-. ..++.+-.+.-+++ .+|....+. .+--.
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e 288 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHE 288 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccc
Confidence 3222 2222334445567788999999999999998764 44444443 34443344444455 555554432 11111
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHH----HHHHHhhcC--------------
Q 039873 338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEA----ANKVFSDMR-------------- 399 (709)
Q Consensus 338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~f~~~~-------------- 399 (709)
.....=++......-.+....++....+.|+++ ++..+...|-.-...+- +..+...+.
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 111111111222222334455566666677654 33334444432211111 111111111
Q ss_pred CCChhhHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHH
Q 039873 400 YRDIITWNA--MICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEH 476 (709)
Q Consensus 400 ~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 476 (709)
.|....|+. ++..|-..|+++.|+.+.+.... -.|+.+ -|..=...+.+.|++++|..+++...+ --.||...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHH
Confidence 244555655 56778889999999999999887 477755 454555778999999999999998743 22455444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHH--HHHhcCCchHHHHHHHHHHh
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRSTPVKW-D--------VVAWHTLLN--ASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~~~~p-d--------~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~ 534 (709)
-+--+.-..++.+.++|.++.....-.- + .-.|-.+-. +|.+.|++.+|+.=|..+.+
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 3355566679999999999854332110 1 224444333 67778888777765554433
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=7.5e-05 Score=78.01 Aligned_cols=94 Identities=5% Similarity=-0.033 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 554 (709)
+-.++..|-+.|+++.|...++. ++-.|. +..|-+=...+...|+++.|...++++.+++-.|...-.--+.-..++.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence 34566777777777777777763 333444 2223233345566677777777777777777555333323444445677
Q ss_pred CchhHHHHHHHHHhCC
Q 039873 555 RWDGVSKIRKLMKVRK 570 (709)
Q Consensus 555 ~~~~a~~~~~~m~~~~ 570 (709)
+.++|.++.......|
T Consensus 454 ~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREG 469 (700)
T ss_pred ccHHHHHHHHHhhhcc
Confidence 7777777776665544
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.6e-05 Score=74.06 Aligned_cols=365 Identities=10% Similarity=0.028 Sum_probs=222.3
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHH-HHhCC-ChhHH--------------HHHHHHhhh---
Q 039873 67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTW-YLHNG-FLLET--------------LKLFKNMVS--- 127 (709)
Q Consensus 67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~-~~~~g-~~~~A--------------~~~~~~m~~--- 127 (709)
+...--..+..|-..++-+.|.....+.|.+-..--+.|+.+ +.+.| +..++ +....-..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 444555677778888888999998888886433334444433 33332 11111 111111110
Q ss_pred -----------CCCCCCChhhHHHHHHHHhc--CCCchHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 039873 128 -----------GDNLEPNEYIFSIVLSSCSR--SGRGAEGRQCHGYVFKS-GLVFCKYVRNALVELYTKCLDVEMAKRLL 193 (709)
Q Consensus 128 -----------~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f 193 (709)
.-.+.|+..+...-+++++. .++...+-+.+-.+... -+.-++....++.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 11123333333333444432 23333344444444333 34556778888899999999999999999
Q ss_pred hhCCCCCcccHHHH---HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCc
Q 039873 194 DLLPGYDVFEYNSV---LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD 270 (709)
Q Consensus 194 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 270 (709)
++...-|+.+..+| .-.+.+.|+++.-..+...+.... +-....|..-+...-..++++.|..+-+..++.. +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 88766555443332 233456788888777777765421 1122223333333445667777877777777654 344
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH-HH
Q 039873 271 VFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML-NS 346 (709)
Q Consensus 271 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~~ 346 (709)
...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|.+.||.-+-+...+. +..+..+...+. ..
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 44554445667778899999888887543 37789999999999999999988776654432 222333443331 22
Q ss_pred Hh-ccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHH
Q 039873 347 AA-GLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREAL 423 (709)
Q Consensus 347 ~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 423 (709)
|. ....-++|+.+++...+.. +.-....+.+...+...|..+++..++++.. .+|....+.|...+...+.+.+|+
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred eccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 22 2223467777777766654 3334556677777788888888888888755 578888888888888888888888
Q ss_pred HHHHHHHHCCCCCC
Q 039873 424 TLFQNMLAAEERPN 437 (709)
Q Consensus 424 ~~~~~m~~~g~~pd 437 (709)
+.|..... +.|+
T Consensus 492 ~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 492 EYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHh--cCcc
Confidence 88888777 4554
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=4.7e-05 Score=81.36 Aligned_cols=255 Identities=15% Similarity=0.104 Sum_probs=136.2
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc-cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873 306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNE-FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384 (709)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 384 (709)
.-+...|-..|++++|++++++.++. .|+. ..|..-...+-+.|++++|...++.+.... .-|-++-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 44456666777777777777776654 3442 345555556667777777777777777655 4466666667777778
Q ss_pred cCCHHHHHHHHhhcCCCCh----------hhH--HHHHHHHHHcCChHHHHHHHHHHHHC--CCC-------------CC
Q 039873 385 GGNIEAANKVFSDMRYRDI----------ITW--NAMICGYSHHGLGREALTLFQNMLAA--EER-------------PN 437 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-------------pd 437 (709)
+|++++|.+++....+++. ..| ..-..+|.+.|++..|++.|....+. .+. ..
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 8888888877776665431 123 22356777888888887766655431 111 12
Q ss_pred HHHHHHHHHHHhccc-------cHHHHHHHHHHHHHhhCCCC-----------ChHHHHHHHHHH---HhcCCHHHHHHH
Q 039873 438 HVTFVGVLSACGHLG-------LVQEGFYYLNHLMKQIGIVP-----------GLEHYTCIVGLL---SKAGLLDEAEKF 496 (709)
Q Consensus 438 ~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~~ 496 (709)
..+|..+|.-.-+.. -...|.+++-.+...-.... +..--..+-.-. .+...-+++.+.
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~ 434 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA 434 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 223333333221111 11223333333322100000 000000010000 011111111111
Q ss_pred H-H--------------hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873 497 M-R--------------STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 497 ~-~--------------~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
= + ..+.+.|....+.-+. ....=+++|.++++-+.+..|++..++..--.+|.+.|++--|.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLq 512 (517)
T PF12569_consen 435 AKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQ 512 (517)
T ss_pred HhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHH
Confidence 0 0 0011112111111111 123346889999999999999999999999999999999999888
Q ss_pred HHHH
Q 039873 562 IRKL 565 (709)
Q Consensus 562 ~~~~ 565 (709)
.++.
T Consensus 513 aL~k 516 (517)
T PF12569_consen 513 ALKK 516 (517)
T ss_pred HHHh
Confidence 7653
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=5.8e-05 Score=80.45 Aligned_cols=358 Identities=12% Similarity=0.040 Sum_probs=213.8
Q ss_pred CchhHHHHHHH--HHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCC--------CCCh
Q 039873 66 ENVVLTNSLVN--LYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNL--------EPNE 135 (709)
Q Consensus 66 ~~~~~~~~ll~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~--------~p~~ 135 (709)
.|..+..++++ .|..-|+.+.|.+-...+. .-+.|..|.+.+++..+.+-|.-.+-.|.+.+|. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 57778888876 4778899999988777665 3467999999999999999998888877633332 222
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhC
Q 039873 136 YIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY-DVFEYNSVLNGLIEN 214 (709)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~ 214 (709)
.+=..+.-.....|.+++|+.++.+..+.. .|=..|...|.+++|.++-+.-..- -..+|..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222233333457788999999998887753 3446788889999999887643221 112444445555556
Q ss_pred CCccHHHHHHHHH----------HhCCC---------CCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHH
Q 039873 215 ECFRGGVEVLGKM----------VSGSV---------RWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINS 275 (709)
Q Consensus 215 g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 275 (709)
++.+.|++.|++- +.... +-|...|.-...-.-..|+.+.|..++..+.. |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 7778887777653 11110 11222333333333445666666665554432 34
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC---
Q 039873 276 AMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA--- 352 (709)
Q Consensus 276 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~--- 352 (709)
+++...|-.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.+ +|...|+.|-..+-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence 5566666677777777776653 356666778888999999999999998775 34444444432221
Q ss_pred ------------hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--------------CCChhhH
Q 039873 353 ------------LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--------------YRDIITW 406 (709)
Q Consensus 353 ------------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------------~~~~~~~ 406 (709)
.-.|-.+|++ .|.. ...-+..|-|.|.+.+|+++--+-. ..|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1112222221 1211 1223456778888888776532222 1244445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH----------CC----------------CCCCHHH----HHHHHHHHhccccHHH
Q 039873 407 NAMICGYSHHGLGREALTLFQNMLA----------AE----------------ERPNHVT----FVGVLSACGHLGLVQE 456 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~----------~g----------------~~pd~~t----~~~ll~a~~~~g~~~~ 456 (709)
+--..-+..+.++++|..++-..++ .| -.|+..+ +..+...|.++|.+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 5555555666666666655432211 11 1244333 4445567888888777
Q ss_pred HHHHHHH
Q 039873 457 GFYYLNH 463 (709)
Q Consensus 457 a~~~~~~ 463 (709)
|-+-|.+
T Consensus 1164 AtKKfTQ 1170 (1416)
T KOG3617|consen 1164 ATKKFTQ 1170 (1416)
T ss_pred HHHHHhh
Confidence 6655543
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=3e-05 Score=84.52 Aligned_cols=496 Identities=10% Similarity=0.003 Sum_probs=255.2
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 039873 68 VVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSS 144 (709)
Q Consensus 68 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~ 144 (709)
...|..|...|...-+...|.+.|+..-+ .|..+|..+...|++...+++|..+.-..-+......-...|..+--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45788888888888888999999998765 456788999999999999999998843322111111112223333333
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH---HHHHHhCCCccHHH
Q 039873 145 CSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSV---LNGLIENECFRGGV 221 (709)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~ 221 (709)
+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-.- .-.-+..|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 456677777777777777765 44778899999999999999999999988776555544332 22334578888888
Q ss_pred HHHHHHHhC------CCCCChhhHHHHHHHHhcCCC-------cHHHHHHHHHHHHcCCCCchHHHHHHHH---------
Q 039873 222 EVLGKMVSG------SVRWDSVTYVNAFGLSASLKD-------LKLGLQVHSQMLKSDIEPDVFINSAMIS--------- 279 (709)
Q Consensus 222 ~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~--------- 279 (709)
+.+...... +..--..++..+...+...|- ++.+.+.+.-.+......+...|-.+-+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 877765431 111112233222222222222 2222232222222221222222222211
Q ss_pred ----------HHHh----cCCh---H---HHHHHHHhcc--CCCHhhHHHHHHHHHH----c----CCHhHHHHHHHHHH
Q 039873 280 ----------MYGK----CGKF---S---NAKKVFEGLE--TRNVVLWTAMVAACFQ----N----EYFEEALNLFCGME 329 (709)
Q Consensus 280 ----------~y~~----~g~~---~---~A~~~~~~m~--~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~ 329 (709)
.+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+ . .+...|+..+++-+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 1111 1111 0 0011100000 0124556666555544 1 12235666666655
Q ss_pred hCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhH
Q 039873 330 YEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITW 406 (709)
Q Consensus 330 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~ 406 (709)
+. ..|...+-..+...+..|++..+...|-..... .+....+|..+.-.+.+..+++-|...|..... .|...|
T Consensus 811 ~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 811 SL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 42 233333333344444444444443333222222 234455566666666666666666666665542 233444
Q ss_pred HHHHHHHHHcCChHHHHHHHHH---------------------------------------HHH---------CCCCCCH
Q 039873 407 NAMICGYSHHGLGREALTLFQN---------------------------------------MLA---------AEERPNH 438 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~---------------------------------------m~~---------~g~~pd~ 438 (709)
--+.......|+.-+++.+|.. ... .|.+-+.
T Consensus 888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence 4433333333333333333332 111 1222234
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTC----IVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLN 514 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~ 514 (709)
..|.......-+.+.+..+.+.....+.-...+-+...|+. ....+...|.++.|..-+...+.+-|..+-.+-+.
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence 45555555555555555555554443322222333444443 22344445666666665554444444444343333
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCch---hHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 515 ASRVHQNYGFGRRIAEYILHMDPNDVG---TYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 515 ~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
. --.++++.+.+.|++++.+--++.. ....++.....++.-+.|....-+...
T Consensus 1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3 3357889999999999886533322 223334444566677777766555543
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=7.1e-07 Score=84.82 Aligned_cols=222 Identities=12% Similarity=0.018 Sum_probs=170.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH-HHHHHHhcc
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA-VMLNSAAGL 350 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~~~~~~ 350 (709)
-+-+..+|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+-.+++.|+.+|.+-.+. .|-.+||. .+...+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 45677888888888888888887653 56778888888888888999999888877654 56666654 345556677
Q ss_pred CChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 039873 351 SALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQ 427 (709)
Q Consensus 351 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (709)
++.+.+.++++.+.+.. +.++....++...|.-.++.+-|++.|+++.+ .+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88888888888888765 55666666777778888899999999887764 567788888888888899999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873 428 NMLAAEERPNHV--TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 428 ~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 500 (709)
+....--.|+.. .|..+.......|++..|.+.|+-... .-.-..+.++.|.-.-.+.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 988765556543 566666667778999999999887654 22334567888888888889999998888754
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.00013 Score=79.46 Aligned_cols=410 Identities=13% Similarity=0.123 Sum_probs=221.4
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHH-HHHHHHhC
Q 039873 34 LKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSS-LMTWYLHN 112 (709)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~ 112 (709)
.-|..-+-++.++..-...++..+..|.. ++.++|+|...|....+-.+ +.+.+ |.. |.+ .+.-||..
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~~----d~a~hnAlaKIyIDSNNnPE--~fLke----N~y-YDs~vVGkYCEK 910 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGSQ----DPATHNALAKIYIDSNNNPE--RFLKE----NPY-YDSKVVGKYCEK 910 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccCc----chHHHhhhhheeecCCCChH--Hhccc----CCc-chhhHHhhhhcc
Confidence 34455566677777777788888888876 89999999999987654322 22222 111 222 23335555
Q ss_pred CChhHHHHHHHHhhhCC----CCCCChhhHHHHHHHHhcCCCc-----------hHHHHHHHHHHHhCCC--CchhHHHH
Q 039873 113 GFLLETLKLFKNMVSGD----NLEPNEYIFSIVLSSCSRSGRG-----------AEGRQCHGYVFKSGLV--FCKYVRNA 175 (709)
Q Consensus 113 g~~~~A~~~~~~m~~~~----g~~p~~~t~~~ll~~~~~~~~~-----------~~a~~~~~~~~~~g~~--~~~~~~~~ 175 (709)
.++.-|.-.|++=. .. ++.-....|....+-+....+. ..-+++.+++++.+++ .|+.-.+.
T Consensus 911 RDP~lA~vaYerGq-cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 911 RDPHLACVAYERGQ-CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred cCCceEEEeecccC-CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 55443332222110 00 0011111222222222222222 2235667777777653 45566666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-CCccc-----HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 039873 176 LVELYTKCLDVEMAKRLLDLLPG-YDVFE-----YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASL 249 (709)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~~~~-~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (709)
-+.++...+-..+-.++++++.- +++++ -|.||-...+. +.....+..+++-.-. .| .+...+...
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~ia~iai~~ 1061 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DIAEIAIEN 1061 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hHHHHHhhh
Confidence 77788888888888888887643 33322 33333333332 3444555555543221 11 122334444
Q ss_pred CCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 039873 250 KDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGME 329 (709)
Q Consensus 250 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (709)
+-+++|..+|+.. ..+....+.||. ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 5566666666543 334444444443 345666676666666544 45777777777777777777766332
Q ss_pred hCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh------
Q 039873 330 YEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI------ 403 (709)
Q Consensus 330 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~------ 403 (709)
-|...|.-++..+.+.|.+++-..++..+.+..-+|. +-+.||-+|++.+++.+-.+... -||+
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQV 1200 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHH
Confidence 2455677778888888888777777776666554443 34567777777777766655432 2333
Q ss_pred --------------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 039873 404 --------------------ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH 463 (709)
Q Consensus 404 --------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 463 (709)
.-|..|...+...|++..|...-++. .+..||.-+-.||...+.+.-| +
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----Q 1269 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----Q 1269 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----H
Confidence 34444455555555555554443322 2334555555555554443322 1
Q ss_pred HHHhhCC--CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873 464 LMKQIGI--VPGLEHYTCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 464 ~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~ 498 (709)
| .|+ .....-..-|+.-|-..|.++|-..+++
T Consensus 1270 i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1270 I---CGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 222 2233445556666666677766666665
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.60 E-value=3e-05 Score=82.80 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhc
Q 039873 410 ICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKA 487 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 487 (709)
...|-..|++++|+++.++.++ ..|+.+ .|..-...+-+.|++++|.+..+.... +.+ |...-+-.+..+.|+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHC
Confidence 4445555666666666665555 344432 444445555566666666555555422 222 233333344445566
Q ss_pred CCHHHHHHHHH
Q 039873 488 GLLDEAEKFMR 498 (709)
Q Consensus 488 g~~~~A~~~~~ 498 (709)
|++++|.+++.
T Consensus 276 ~~~e~A~~~~~ 286 (517)
T PF12569_consen 276 GRIEEAEKTAS 286 (517)
T ss_pred CCHHHHHHHHH
Confidence 66666665543
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.9e-06 Score=88.56 Aligned_cols=218 Identities=13% Similarity=0.042 Sum_probs=170.6
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHH
Q 039873 348 AGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALT 424 (709)
Q Consensus 348 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 424 (709)
.+.|++..|.-.|+..++.. +.+...|--|...-...++-..|+..+.+..+ .|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777877787777765 56677777787777888888888888877663 456677778888888898889999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 425 LFQNMLAAEER--------PNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 425 ~~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
+++.-+....+ ++..+-.. ........+....++|-.+....+..+|..++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887653210 01000000 122333445566777777777778778888999999999999999999999
Q ss_pred HHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 497 MRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 497 ~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
|+. +.++|+ ...||-|...++.-.+.++|+..|.+++++.|.-..+-..|+-.|...|.++||.+.|=....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 984 466775 889999999999999999999999999999999888889999999999999999999887765
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=9.2e-05 Score=77.36 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=102.3
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHh
Q 039873 376 NALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEE-RPNH--VTFVGVLSACG 449 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~ 449 (709)
..+...+...|++++|...+++..+ .+...+..+...|...|++++|..++++.....- .|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555666666666666665542 2344555666666666666666666666555321 1222 12334555566
Q ss_pred ccccHHHHHHHHHHHHHhhCCCCChHHH-H--HHHHHHHhcCCHHHHHHH---HH---hC-CCCCCHHHHHHHHHHHHhc
Q 039873 450 HLGLVQEGFYYLNHLMKQIGIVPGLEHY-T--CIVGLLSKAGLLDEAEKF---MR---ST-PVKWDVVAWHTLLNASRVH 519 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~---~~-~~~pd~~~~~~ll~~~~~~ 519 (709)
..|++++|..+++.........+..... + .+...+...|..+.+.+. .. .. +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6666666666666653211111111111 1 222223333322222222 11 11 1001112222455566777
Q ss_pred CCchHHHHHHHHHHhcC-C--------CCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 520 QNYGFGRRIAEYILHMD-P--------NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
|+.+.|..+++.+.... . ...........++...|++++|.+.+.......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888887765522 1 123455677778889999999999999887643
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=1.1e-05 Score=73.66 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=126.3
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc
Q 039873 377 ALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLG 452 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g 452 (709)
.|.-.|...|+...|..-+++..+ | +..+|..+...|.+.|..+.|.+.|++... +.|+ ....|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 344567777777777777777663 2 334777777777777777777777777776 4554 335555555566677
Q ss_pred cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHH
Q 039873 453 LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAE 530 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~ 530 (709)
.+++|.+.|+..+..-...--..+|..+.-+..+.|+.+.|++.|++. ...|+ +.+.-.+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777777777664222222346777777777777777777777632 33344 5556666666777777777777777
Q ss_pred HHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 531 YILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 531 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
......+.........+.+-...|+-+.+-++-.++..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77776666666666666666777777777666655543
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.0026 Score=75.66 Aligned_cols=357 Identities=10% Similarity=-0.067 Sum_probs=172.3
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCccc--HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873 178 ELYTKCLDVEMAKRLLDLLPGYDVFE--YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 255 (709)
..|...|++.+|..........+... .......+...|+++.+..++..+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 33555666666666555554332111 1111233445677776666666552211111222223333344566788888
Q ss_pred HHHHHHHHHcCC------CCc--hHHHHHHHHHHHhcCChHHHHHHHHhccC----CCH----hhHHHHHHHHHHcCCHh
Q 039873 256 LQVHSQMLKSDI------EPD--VFINSAMISMYGKCGKFSNAKKVFEGLET----RNV----VLWTAMVAACFQNEYFE 319 (709)
Q Consensus 256 ~~~~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~ 319 (709)
...+....+.-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777776654310 111 11222233455667888888777776432 121 23455555667778888
Q ss_pred HHHHHHHHHHhCCCC---CC--ccchHHHHHHHhccCChhHHHHHHHHHHHh----CCCC---ChhHHhHHHhHHHhcCC
Q 039873 320 EALNLFCGMEYEAIR---PN--EFTFAVMLNSAAGLSALRHGDLLHAHIEKS----GFKE---HLIVGNALINMYAKGGN 387 (709)
Q Consensus 320 ~A~~~~~~m~~~g~~---pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~li~~y~~~g~ 387 (709)
+|...+.+.....-. +. ..++..+...+...|+++.|...+...... +... ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 888877776542111 11 122333444556677777777776665542 2111 12233344455556677
Q ss_pred HHHHHHHHhhcCC------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHH-----HHHHHHhcccc
Q 039873 388 IEAANKVFSDMRY------R--DIITWNAMICGYSHHGLGREALTLFQNMLAAEER-PNHVTFV-----GVLSACGHLGL 453 (709)
Q Consensus 388 ~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~-----~ll~a~~~~g~ 453 (709)
+++|...+.+... + ....+..+...+...|++++|.+.+++.....-. .....+. ..+..+...|.
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 7777666665431 1 1223333445566667777777766665431100 0000000 01122233566
Q ss_pred HHHHHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC
Q 039873 454 VQEGFYYLNHLMKQIGIVPGL----EHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD-VVAWHTLLNASRVHQN 521 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd-~~~~~~ll~~~~~~g~ 521 (709)
.+.+.+.+..... ...... ..+..+..++...|+.++|...+++. +..++ ..+...+..++...|+
T Consensus 669 ~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 669 KEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 6666665544321 000000 01234445556666666666654432 11111 1233334445566666
Q ss_pred chHHHHHHHHHHhcC
Q 039873 522 YGFGRRIAEYILHMD 536 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~ 536 (709)
.+.|...+.+++++.
T Consensus 747 ~~~A~~~L~~Al~la 761 (903)
T PRK04841 747 KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666544
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=7.9e-06 Score=81.17 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=104.1
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 039873 376 NALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH----L 451 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~ 451 (709)
.....+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCc
Confidence 33445677789999999888876 4566666778888999999999999999987 34443 34444444332 2
Q ss_pred ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCc-hHHHHH
Q 039873 452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNY-GFGRRI 528 (709)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~-~~a~~~ 528 (709)
..+.+|..+|+++.. ...+++...+.+.-+....|++++|.+++++ +...|+ +.++-.++......|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 357888888888754 3456667777777777788888888777653 333343 55555666666666665 556677
Q ss_pred HHHHHhcCCCCc
Q 039873 529 AEYILHMDPNDV 540 (709)
Q Consensus 529 ~~~~~~~~p~~~ 540 (709)
..++....|+.+
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 777777777643
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.4e-07 Score=59.58 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=27.8
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873 265 SDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 265 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 298 (709)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.0005 Score=73.62 Aligned_cols=413 Identities=11% Similarity=0.113 Sum_probs=231.2
Q ss_pred HhcCCCCCcchHHHHHH--HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHh-C--
Q 039873 91 FDNMRQRNVVSYSSLMT--WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS-G-- 165 (709)
Q Consensus 91 f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-- 165 (709)
|-....-|.+|-.+++. -|+.-|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|+-.++.|... |
T Consensus 718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR 790 (1416)
T KOG3617|consen 718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR 790 (1416)
T ss_pred hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH
Confidence 33334456777777775 4778899999998887776 5678999999999999998888777766432 1
Q ss_pred -----C-CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhH
Q 039873 166 -----L-VFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTY 239 (709)
Q Consensus 166 -----~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 239 (709)
. .++ .+-....-.-...|.+++|+.++.+-..- ..|=..|-..|.+++|+++-+.--+-.++ .||
T Consensus 791 AlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Ty 861 (1416)
T KOG3617|consen 791 ALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTY 861 (1416)
T ss_pred HHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehh---hhH
Confidence 1 121 22222223334667888888888775543 33344555678888888876653332222 355
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHh
Q 039873 240 VNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFE 319 (709)
Q Consensus 240 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 319 (709)
..-..-+...++.+.|.+.|+.. | .+--.+...|. .+....+...+.+.++....| ...-+-..|+.+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~---~-~hafev~rmL~------e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~Gemd 929 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKA---G-VHAFEVFRMLK------EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMD 929 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhc---C-ChHHHHHHHHH------hChHHHHHHHHhccchHHHHH--HHHHHhcccchH
Confidence 55555555667777777776543 2 11111111111 123333444445554444333 334444678899
Q ss_pred HHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873 320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 399 (709)
.|+.+|..... |-+++...|-.|+.++|-+|-++ .-|....-.|..+|-..|++.+|...|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99998877653 45566667778888888877654 3356667778889999999999998887764
Q ss_pred CCChhhHHHHHHHHHHcC---------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHH----
Q 039873 400 YRDIITWNAMICGYSHHG---------------LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYY---- 460 (709)
Q Consensus 400 ~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~---- 460 (709)
++..-|..+-.++ +.-.|-.+|++. |.. +...+.-|-++|.+.+|+++
T Consensus 995 -----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 995 -----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 2222333222222 122222333321 111 11122234455555555433
Q ss_pred -----HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 461 -----LNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 461 -----~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
++.+.++..-..|+...+.-.+.+....++++|..++-... -+.--+. .+...+....+++.+.|.--
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~Alq-lC~~~nv~vtee~aE~mTp~ 1134 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQ-LCKNRNVRVTEEFAELMTPT 1134 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHH-HHhcCCCchhHHHHHhcCcC
Confidence 22223333333445555555555666666666665543210 0111111 23344455555555554321
Q ss_pred ---CCCC---chhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 536 ---DPND---VGTYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 536 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
.|+. ......++..|.++|.|.-|.+-|.+.
T Consensus 1135 Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1135 KDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1221 235667888888999888887766654
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=1.5e-05 Score=89.66 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=164.6
Q ss_pred CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873 369 KEHLIVGNALINMYAKGGNIEAANKVFSDMRY--------RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT 440 (709)
Q Consensus 369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 440 (709)
+.+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 45567788888888899999999999998763 13458999998888889888999999999883 223456
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC---CHHHHHHHHHHH
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKW---DVVAWHTLLNAS 516 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p---d~~~~~~ll~~~ 516 (709)
|..|+..|.+.+..++|-++++.|.++++ -...+|..+++.+.+...-+.|.+++++ +..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999999877 4556899999999999999999998763 22223 244444555556
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
.++|+.+.|+.+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999998765
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00012 Score=69.14 Aligned_cols=311 Identities=13% Similarity=0.062 Sum_probs=173.7
Q ss_pred HHHHHHHHccCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHH-HHHHhc
Q 039873 72 NSLVNLYAKCNQISIARQLFDNMRQR---NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIV-LSSCSR 147 (709)
Q Consensus 72 ~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l-l~~~~~ 147 (709)
++.+..+.+..++++|++++..-.++ +....+.|-.+|.+..++..|.+.|+++-+ ..|...-|..- ...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHH
Confidence 34445556666777777766655442 344455566666677777777777777642 34444333322 223334
Q ss_pred CCCchHHHHHHHHHHHhCCCCchhHHHHHH----HHHHhcCChHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCccHHHH
Q 039873 148 SGRGAEGRQCHGYVFKSGLVFCKYVRNALV----ELYTKCLDVEMAKRLLDLLPG-YDVFEYNSVLNGLIENECFRGGVE 222 (709)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 222 (709)
.+.+..|..+...|... + ...+..+ ...-..+++..++.+.++.+. .+..+.+...-...+.|++++|++
T Consensus 91 A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred hcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 45555665555544321 1 1111111 111245778888888888884 566666665566678899999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh--ccC-
Q 039873 223 VLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEG--LET- 299 (709)
Q Consensus 223 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--m~~- 299 (709)
-|+...+-+---....|+..+..+ +.++.+.|.+...+++++|+.......-.+.. +.-++..+=+. |..
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~t------egiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTT------EGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCcccee------ccCchhcccchHHHHHH
Confidence 998887643333445677666444 56788889988888888875432211100000 00000000000 000
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHH
Q 039873 300 RNVVLWTAMVAACFQNEYFEEALNLFCGMEY-EAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNAL 378 (709)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 378 (709)
.=+..+|.-...+.+.|+++.|.+.+..|.- ..-..|.+|...+.-.- ..+++..+..-+..+...+ +....++..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 0012344444556677788888777777753 22345667765543221 2234555555555666554 3445666677
Q ss_pred HhHHHhcCCHHHHHHHHhhcC
Q 039873 379 INMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~ 399 (709)
+-.|||..-++-|.+++.+-.
T Consensus 317 LllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCc
Confidence 778888888888888887654
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.0001 Score=75.57 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=138.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChh----------hHHHHHH
Q 039873 342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII----------TWNAMIC 411 (709)
Q Consensus 342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~li~ 411 (709)
.+.++..+..+++.+.+-+...+... .+..-++....+|...|...+....-+...+..-. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34555556666777777777776655 55555666777788777776666554443322111 1222344
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE-HYTCIVGLLSKAGLL 490 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~ 490 (709)
+|.+.++++.|+..|++.......||..+ +....+++....... .-+.|... -...=..-+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCH
Confidence 66677788888888888766544554322 122333333332222 12233321 111225566788899
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 491 DEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 491 ~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.+|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|.-=+-++....+|++|.+.|.+..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998887754 2335 4778888888888999999999999999999998888888888888888899999988887766
Q ss_pred CC
Q 039873 569 RK 570 (709)
Q Consensus 569 ~~ 570 (709)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 43
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00014 Score=86.38 Aligned_cols=323 Identities=13% Similarity=0.016 Sum_probs=202.7
Q ss_pred hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC----CC------H--hhHHHHHHHHHH
Q 039873 247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET----RN------V--VLWTAMVAACFQ 314 (709)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~------~--~~~~~li~~~~~ 314 (709)
...|+.+.....+..+.......+..........+...|+.++|...++.... .+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666656555432111112222334445556678999999888876531 11 1 111222345568
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCc----cchHHHHHHHhccCChhHHHHHHHHHHHh----CC-CCChhHHhHHHhHHHhc
Q 039873 315 NEYFEEALNLFCGMEYEAIRPNE----FTFAVMLNSAAGLSALRHGDLLHAHIEKS----GF-KEHLIVGNALINMYAKG 385 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~~y~~~ 385 (709)
.|++++|...+++....-...+. .....+...+...|+++.|...+...... |- .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999987753111121 12334445567789999999998887653 21 11123445667788899
Q ss_pred CCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhc
Q 039873 386 GNIEAANKVFSDMRY-------R----DIITWNAMICGYSHHGLGREALTLFQNMLAA--EERPN--HVTFVGVLSACGH 450 (709)
Q Consensus 386 g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~ 450 (709)
|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ..++..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 1 1223445556677789999999999887653 11222 2234445556778
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhc
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHY-----TCIVGLLSKAGLLDEAEKFMRSTPVK--WDV----VAWHTLLNASRVH 519 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--pd~----~~~~~ll~~~~~~ 519 (709)
.|+.++|.+.+...............+ ......+...|+.+.|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 899999999988875421111111111 11224456689999999998654311 111 1134556678889
Q ss_pred CCchHHHHHHHHHHhcC------CCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 520 QNYGFGRRIAEYILHMD------PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|+.++|...++++.+.. +....++..++.+|...|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987742 122346778889999999999999999999864
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.5e-07 Score=58.41 Aligned_cols=33 Identities=30% Similarity=0.638 Sum_probs=23.7
Q ss_pred CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 399 (709)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=2.3e-06 Score=84.97 Aligned_cols=149 Identities=15% Similarity=0.002 Sum_probs=113.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH---HHHHHHHHHHhc
Q 039873 411 CGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE---HYTCIVGLLSKA 487 (709)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~ 487 (709)
..|...|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|.. ...+.+..+.-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCc
Confidence 4556679999999998752 345566677888999999999999999984 3444532 233444444444
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc-hhHHHHHH
Q 039873 488 GLLDEAEKFMRSTPV--KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW-DGVSKIRK 564 (709)
Q Consensus 488 g~~~~A~~~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 564 (709)
+.+.+|..+|+++.- .+++.+.+.+..+....|++++|+++++++++.+|.++.+...++-+....|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 579999999997743 367888888888999999999999999999999999999999999999999998 56778888
Q ss_pred HHHh
Q 039873 565 LMKV 568 (709)
Q Consensus 565 ~m~~ 568 (709)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 8875
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=0.00047 Score=72.02 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCC-CCCh--hHHhHHHhHH
Q 039873 307 AMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF-KEHL--IVGNALINMY 382 (709)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~--~~~~~li~~y 382 (709)
.+...+...|++++|.+.+++..+.. |+ ...+..+...+...|++++|...+....+..- .++. ..+..+...|
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 33345555666666666666655432 22 22333333344444444444444444443211 0111 1222344444
Q ss_pred HhcCCHHHHHHHHhhc
Q 039873 383 AKGGNIEAANKVFSDM 398 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~~ 398 (709)
...|+.++|..+|++.
T Consensus 197 ~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 197 LERGDYEAALAIYDTH 212 (355)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555555543
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.6e-05 Score=73.46 Aligned_cols=311 Identities=13% Similarity=0.106 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHH-HHHHHHHc
Q 039873 239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTA-MVAACFQN 315 (709)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~ 315 (709)
+++++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555444442 22445556666667777777777777777654 22222211 12345566
Q ss_pred CCHhHHHHHHHHHHhCCCCCCccchHHHHHH--HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHH
Q 039873 316 EYFEEALNLFCGMEYEAIRPNEFTFAVMLNS--AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANK 393 (709)
Q Consensus 316 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 393 (709)
+.+.+|+.+...|... |+...-..-+.+ ..+.+++..++.+.++.... .+..+.+...-...+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6777777777666532 111111111111 12234444444444433221 122233333334455666666666
Q ss_pred HHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhC
Q 039873 394 VFSDMRY----RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG 469 (709)
Q Consensus 394 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 469 (709)
-|+...+ .....||.-+ +..+.|++..|+++..+.++.|++--+..-..+..--.....+..-..++.+.+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal---- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL---- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH----
Confidence 6665542 2334454333 333456666666666666666654211100000000000000000011111111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHH
Q 039873 470 IVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV----KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYIL 545 (709)
Q Consensus 470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 545 (709)
+..+|.-...+.+.|+++.|.+-+-.||- +.|++|...+.-. -..+++..+.+-+.-+++++|--..+|..
T Consensus 241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFAN 315 (459)
T KOG4340|consen 241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFAN 315 (459)
T ss_pred ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHH
Confidence 11233333456788999999999988862 3467887765432 23567777888888889999887889999
Q ss_pred HHHHhhhcCCchhHHHHHHHH
Q 039873 546 LSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 546 l~~~~~~~g~~~~a~~~~~~m 566 (709)
++-+|++..-++-|..++-+-
T Consensus 316 lLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhC
Confidence 999999999999988887543
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0044 Score=63.81 Aligned_cols=419 Identities=13% Similarity=0.130 Sum_probs=208.3
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQ--RN-VVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVL 142 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll 142 (709)
-|..+|+.||+-+... .++++++.++++.. |. ...|..-|..-.+.++++....+|.+.+ ..-. +...|..-|
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL-vkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL-VKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHh--hHhHHHHHH
Confidence 5788888888877766 88888888888865 33 3568888888888888888888888876 3322 344454444
Q ss_pred HHHhcC-CCchHHH----HHHHHH-HHhCCCCc-hhHHHHHHHHH---------HhcCChHHHHHHHhhCCCC-------
Q 039873 143 SSCSRS-GRGAEGR----QCHGYV-FKSGLVFC-KYVRNALVELY---------TKCLDVEMAKRLLDLLPGY------- 199 (709)
Q Consensus 143 ~~~~~~-~~~~~a~----~~~~~~-~~~g~~~~-~~~~~~li~~y---------~~~g~~~~A~~~f~~~~~~------- 199 (709)
.-..+. ++....+ +.++.+ .+.|+++- ...|+..+... ....+++..++++.++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 433322 2222222 223332 34454432 33455555443 3344566777777776541
Q ss_pred ---CcccHHHHHHHHH-------hCCCccHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHhcCCCc
Q 039873 200 ---DVFEYNSVLNGLI-------ENECFRGGVEVLGKMVS--GSVRWDSVT---------------YVNAFGLSASLKDL 252 (709)
Q Consensus 200 ---~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~~~~ 252 (709)
|-..|..=|+... +...+..|.++++++.. .|..-+..+ |..+|..= +.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCc
Confidence 2222222221111 23345566666666643 343322222 22222211 11111
Q ss_pred H---------HHHHHHHHHH-HcCCCCchHHHH-----HHHHHHHhcCChH-------HHHHHHHhccC----CCHhhHH
Q 039873 253 K---------LGLQVHSQML-KSDIEPDVFINS-----AMISMYGKCGKFS-------NAKKVFEGLET----RNVVLWT 306 (709)
Q Consensus 253 ~---------~a~~~~~~~~-~~g~~~~~~~~~-----~li~~y~~~g~~~-------~A~~~~~~m~~----~~~~~~~ 306 (709)
. ...-+|++.+ -.++.|++.... ..-+.+...|+.. ++.++++...+ .+...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111122221 123333332111 1112333344433 33333333222 1122222
Q ss_pred HHHHHH---HHcCCHhHHHHHHHHHHhC-CCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC-ChhHHhHHHhH
Q 039873 307 AMVAAC---FQNEYFEEALNLFCGMEYE-AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE-HLIVGNALINM 381 (709)
Q Consensus 307 ~li~~~---~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~ 381 (709)
.+..-- .+....+.....+++.... ...|+ .+|...++...+..-++.|+.+|..+.+.+..+ +++++++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 221100 0011244444555555432 22232 355666666666666777777777777666555 66677777766
Q ss_pred HHhcCCHHHHHHHHhhcCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHH
Q 039873 382 YAKGGNIEAANKVFSDMRY--RDI-ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH--VTFVGVLSACGHLGLVQE 456 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 456 (709)
||. ++.+-|.++|+--.+ +|. .--+..+.-+...++-..|..+|++....++.||. ..|..+|.-=++-|++..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 663 566667777764331 232 23344555556666666677777776666555553 356666666666666666
Q ss_pred HHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHH
Q 039873 457 GFYYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 457 a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~ 491 (709)
..++-+.+...+. ..+...+-..+++.|.-.+...
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 6666555544333 3333334444555555444433
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=1.7e-05 Score=83.78 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=115.1
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHH
Q 039873 268 EPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSA 347 (709)
Q Consensus 268 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 347 (709)
+|--..-..+...+.++|-..+|..+|+++ ..|...|-+|...|+..+|..+..+-.+ -+||...|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445556677777788888888887775 4567777777777777777777766665 245555554444333
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 039873 348 AGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQ 427 (709)
Q Consensus 348 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (709)
.+ ..-+++|.++++....+--..|+.. ..++++++++.+.|+
T Consensus 468 ~d-----------------------------------~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 468 HD-----------------------------------PSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLE 509 (777)
T ss_pred cC-----------------------------------hHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHH
Confidence 22 2233444444443321111111111 122455666666666
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-
Q 039873 428 NMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD- 505 (709)
Q Consensus 428 ~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd- 505 (709)
.-.+ +.| -..||-....+..+.++++.+.+.|..... ..||
T Consensus 510 ~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt-----------------------------------L~Pd~ 552 (777)
T KOG1128|consen 510 RSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-----------------------------------LEPDN 552 (777)
T ss_pred HHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-----------------------------------cCCCc
Confidence 5544 222 223555555555555555555555555432 2333
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...||++-.+|.++|+-.+|...+.++++.+-++...+-...-.-.+.|.|++|.+.+.++.+
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 445555555555555555555555555554443434444444444555555555555555543
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=3.9e-05 Score=74.81 Aligned_cols=180 Identities=13% Similarity=0.010 Sum_probs=122.4
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY--RD-I---ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV---- 439 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---- 439 (709)
.....+..+...|.+.|++++|...|+++.. |+ . ..|..+...|.+.|++++|+..|+++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455667777788888999999998887753 32 1 36677788888889999999999988874 34322
Q ss_pred HHHHHHHHHhcc--------ccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 039873 440 TFVGVLSACGHL--------GLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH 510 (709)
Q Consensus 440 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~ 510 (709)
++..+..++... |+.++|.+.++.+.+. .|+. ..+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444455443 6788888888887654 3332 122221111 1111100 00112
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 511 TLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 511 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45556788999999999999999987654 468899999999999999999999888654
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=6.6e-05 Score=77.53 Aligned_cols=215 Identities=17% Similarity=0.119 Sum_probs=160.9
Q ss_pred hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHH
Q 039873 247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALN 323 (709)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (709)
.+.|++.+|.-.|+..++.. +-+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46678888888888888875 56778888888888888887788877777654 466777888888999999999999
Q ss_pred HHHHHHhCCCC--------CCccchHHHHHHHhccCChhHHHHHHHH-HHHhCCCCChhHHhHHHhHHHhcCCHHHHHHH
Q 039873 324 LFCGMEYEAIR--------PNEFTFAVMLNSAAGLSALRHGDLLHAH-IEKSGFKEHLIVGNALINMYAKGGNIEAANKV 394 (709)
Q Consensus 324 ~~~~m~~~g~~--------pd~~t~~~ll~~~~~~~~~~~a~~i~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 394 (709)
.|+.-+....+ ++..+-.. ........+....++|-. ....+..+|..+...|.-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888654210 01110000 111222233444444444 44556568888999999999999999999999
Q ss_pred HhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 395 FSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 395 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
|+.... .|...||-|...++...+.++|++.|++.++ ++|+-+ ....|.-+|.+.|.+++|...|-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998763 3778999999999999999999999999999 789855 444566689999999999988876543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=3.6e-05 Score=72.17 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=92.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--chHH
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNAS-RVHQN--YGFG 525 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~-~~~g~--~~~a 525 (709)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. .+.|+ ...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566677767766654 23455678888888888888888888888743 34554 77777777763 66676 5899
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999997643
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.30 E-value=0.001 Score=64.38 Aligned_cols=306 Identities=15% Similarity=0.104 Sum_probs=165.3
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHH---HHHhcCCCcHHHHHHHHHHHHcCCCCchHH-HHHHHHHH
Q 039873 206 SVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAF---GLSASLKDLKLGLQVHSQMLKSDIEPDVFI-NSAMISMY 281 (709)
Q Consensus 206 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y 281 (709)
-+-..+...|++..|+.-|...++. |+..|..+. ..|...|.-..|.+-+..+++. .||-.. .---...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4777888899999999999988763 444454444 3566777777787777777765 555322 12233456
Q ss_pred HhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHH
Q 039873 282 GKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA 361 (709)
Q Consensus 282 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~ 361 (709)
.|.|.++.|..-|+.+.+.+.. -+....++.+.-..++-..+ ...+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhHHHHHH
Confidence 7888888888888887653321 00111111111111111111 122223344555566666666
Q ss_pred HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873 362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH 438 (709)
Q Consensus 362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 438 (709)
.+++.. +.|...+..-..+|...|++..|..-++... ..|....--+-..+..-|+.+.++...++-.+ +.||.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 665543 4455566666677777777777765554433 34555555566666677777777777666665 56664
Q ss_pred HHHHHH---H----------HHHhccccHHHHHHHHHHHHHhhCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHh-
Q 039873 439 VTFVGV---L----------SACGHLGLVQEGFYYLNHLMKQIGIVPG-----LEHYTCIVGLLSKAGLLDEAEKFMRS- 499 (709)
Q Consensus 439 ~t~~~l---l----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~- 499 (709)
...-.. + ......+.|.++.+..+..++. .|. ...+..+-..|...|++.+|+....+
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 421110 0 0112234444444444444332 222 11233344455555666666655432
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 500 TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 500 ~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
+.+.|| +.++.--..+|.....++.|+.-|+++.+.+++|.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 233344 44444445555555566666666666666665553
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00081 Score=69.12 Aligned_cols=166 Identities=16% Similarity=0.040 Sum_probs=104.7
Q ss_pred HHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHH
Q 039873 378 LINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQE 456 (709)
Q Consensus 378 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~ 456 (709)
+..+|.+.++.+.|...|.+...+-.. -....+....++++...+...- +.|+.. -.-.-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445677778888888888775421100 1112233344555555555444 344432 12222556778899999
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873 457 GFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 457 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
|...+.++++. .+-|...|+...-+|.+.|.+.+|++=.+.. .+.|+ .-.|.-=..++....+++.|.+.|.+.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998764 2456778888889999999998888765432 23444 33333333455556789999999999999
Q ss_pred cCCCCchhHHHHHHHhhh
Q 039873 535 MDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 535 ~~p~~~~~~~~l~~~~~~ 552 (709)
.+|++...-..+...+..
T Consensus 455 ~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 999886655555554443
No 113
>PLN02789 farnesyltranstransferase
Probab=98.29 E-value=0.00022 Score=71.85 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=110.4
Q ss_pred HhHHHhHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873 375 GNALINMYAKGG-NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLG--REALTLFQNMLAAEERP-NHVTFVGVLSA 447 (709)
Q Consensus 375 ~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 447 (709)
++..-.++.+.| ++++++..++++.+ ++..+|+-....+.+.|+. ++++++++++.+ ..| |..+|.....+
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 333333344444 45666666666542 3445566554445555542 566777777776 344 45577777777
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc---CCH----HHHHHHH-HhCCCCCC-HHHHHHHHHHHHh
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA---GLL----DEAEKFM-RSTPVKWD-VVAWHTLLNASRV 518 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~-~~~~~~pd-~~~~~~ll~~~~~ 518 (709)
+.+.|+++++++.++.+++. -.-+...|+....++.+. |.. +++.++. +.+...|+ ...|+-+...+..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 77777788888888777663 123344555554444443 222 3455554 34444554 8889888888877
Q ss_pred c----CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873 519 H----QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE 553 (709)
Q Consensus 519 ~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 553 (709)
. ++..+|...+.++.+.+|.++.....|+++|+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 4 3456788899998888999988999999999864
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=2.3e-05 Score=69.37 Aligned_cols=122 Identities=11% Similarity=0.008 Sum_probs=77.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 039873 424 TLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV 502 (709)
Q Consensus 424 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 502 (709)
.+|++..+ +.|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34543 334455566677777777777766431 2224556666777777777777777776643 23
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 503 KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 503 ~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
.| +...|..+..++...|+.++|+..+++++++.|+++..+....++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34 46677777777777788888888888888888877777766655543
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.27 E-value=0.00094 Score=73.31 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=117.3
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873 389 EAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM 465 (709)
Q Consensus 389 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 465 (709)
..|...+.+.. ..+...||+|.-. ...|.+.-|.-.|-+-... .+-+..+|..+.-.|....+++.|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666544 3577788877655 5557777777777665553 23456677777777888889999999988763
Q ss_pred HhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh-----C--CCCCCHHHHHHHHHHHHhcCCchHHHH----------
Q 039873 466 KQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRS-----T--PVKWDVVAWHTLLNASRVHQNYGFGRR---------- 527 (709)
Q Consensus 466 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-----~--~~~pd~~~~~~ll~~~~~~g~~~~a~~---------- 527 (709)
.+.|+ ...|-...-..-..|+.-++..+|.. + +--|+...|-.-..-...+|+.+.-+.
T Consensus 878 ---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred ---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 44554 44454444445567877788777653 1 223566666655555566666655444
Q ss_pred HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 528 IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
..++.+...|+...+|.+.+....+.+.+.+|.+...+..
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445555679999999999999999999999988877754
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=3.7e-05 Score=81.34 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=160.2
Q ss_pred CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
+++|-...-..+...+.++|-...|..+|+++. .|.-.|.+|...|+..+|.++..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 456666777888999999999999999999864 788899999999999999999988877 4899999999999
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCchH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~~ 524 (709)
..-...-+++|.++++....+ .-..+.....+.++++++.+.++ ++.+.|- ..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 998888999999999886543 11122223345799999999987 4444553 7788888888889999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
|.+.|.....++|++...++.+.-+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998755
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.23 E-value=0.00024 Score=80.33 Aligned_cols=220 Identities=16% Similarity=0.140 Sum_probs=168.4
Q ss_pred CCCh-hhHHHHHHHHhcCCCcHHHHHHHHHHHHc-CCC---CchHHHHHHHHHHHhcCChHHHHHHHHhccCC-C-HhhH
Q 039873 233 RWDS-VTYVNAFGLSASLKDLKLGLQVHSQMLKS-DIE---PDVFINSAMISMYGKCGKFSNAKKVFEGLETR-N-VVLW 305 (709)
Q Consensus 233 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~ 305 (709)
.||. ..|..-+....+.++++.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+- | ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3553 45677777778888889999888888764 221 12457888888888888888899999998763 3 4568
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCC-CCChhHHhHHHhHHHh
Q 039873 306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF-KEHLIVGNALINMYAK 384 (709)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~ 384 (709)
..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+.=- .-...+..-.+++-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999864 234556788888888888888888989888877521 1245666777888899
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcccc
Q 039873 385 GGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV--TFVGVLSACGHLGL 453 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~ 453 (709)
+|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|.-.|.-=.+.|+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999998763 356799999999999999999999999999988887533 44444443333343
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=0.00013 Score=71.19 Aligned_cols=179 Identities=14% Similarity=0.019 Sum_probs=123.3
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC-hh---hHHH
Q 039873 338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEH---LIVGNALINMYAKGGNIEAANKVFSDMRY--RD-II---TWNA 408 (709)
Q Consensus 338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~---~~~~ 408 (709)
..+......+...|+++.|...+..+.+.. +.+ ...+..+...|.+.|++++|...|+++.+ |+ .. ++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 456666777889999999999999998764 222 24667788999999999999999999863 32 22 4555
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873 409 MICGYSHH--------GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI 480 (709)
Q Consensus 409 li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 480 (709)
+..++.+. |++++|.+.|+++... .|+..-....+.... ... ... . .....+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~---~~~------~~~-~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD---YLR------NRL-A--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH---HHH------HHH-H--------HHHHHH
Confidence 66666654 7889999999999884 565432211111110 000 000 0 012356
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 481 VGLLSKAGLLDEAEKFMRST----PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~~----~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
.+.|.+.|++++|...++.. +-.|. ...|..+..++...|++++|...++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 67788999999999887643 32332 56888889999999999999998888766554
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.17 E-value=0.0019 Score=62.56 Aligned_cols=306 Identities=8% Similarity=-0.014 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHhCCCccHHHHHHHHHHhCCCCCChhhH-HHHHHHH
Q 039873 171 YVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVL---NGLIENECFRGGVEVLGKMVSGSVRWDSVTY-VNAFGLS 246 (709)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~ 246 (709)
.-.--|-..+.-.|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+.++ .+||-..- ..-...+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 33444566677789999999999999998998888875 578889999999999999887 47875422 2223345
Q ss_pred hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 039873 247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFC 326 (709)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (709)
.+.|.++.|..-|..+++.. |+.. ....++.+.-..++-..+ ...+..+..+|+...|++...
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHH
Confidence 68999999999999999875 2111 111122222111111111 112333445566666666666
Q ss_pred HHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChh
Q 039873 327 GMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDII 404 (709)
Q Consensus 327 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~ 404 (709)
.+++.. +-|...+..-..+|...|.+..|..=+..+.+.. ..++...--+-..+...|+.+.++...++..+ ||..
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 665421 1233334444445555666665555444444433 22333444455556666776666666666553 2221
Q ss_pred ----hHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccccHHHHHHHHHHHHHhh
Q 039873 405 ----TWNAM---------ICGYSHHGLGREALTLFQNMLAAEERPNHVTFV---GVLSACGHLGLVQEGFYYLNHLMKQI 468 (709)
Q Consensus 405 ----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~ 468 (709)
.|..+ +......+++.++++-.+...+.......++++ .+-..+...|.+.+|++.-.+..
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL--- 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL--- 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---
Confidence 11111 123456778888888888887743221233433 33445567789999998887764
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873 469 GIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 469 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 500 (709)
.+.|+ +.++.--.++|.-...+++|+.-|++.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56676 778888888999889999999888754
No 120
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.2e-06 Score=54.18 Aligned_cols=35 Identities=37% Similarity=0.585 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH 438 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 438 (709)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.1e-06 Score=53.70 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc
Q 039873 303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNE 337 (709)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 337 (709)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.11 E-value=3e-05 Score=68.68 Aligned_cols=98 Identities=8% Similarity=-0.159 Sum_probs=86.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 470 IVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455 4556788899999999999998854 3445 5888999999999999999999999999999999999999999
Q ss_pred HHhhhcCCchhHHHHHHHHHhC
Q 039873 548 NMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 548 ~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.+|...|++++|...++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.10 E-value=0.00036 Score=65.46 Aligned_cols=154 Identities=10% Similarity=0.135 Sum_probs=111.8
Q ss_pred HhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873 379 INMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF 458 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 458 (709)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888777655443332221 01223566778888888877742 445668888888899999999999
Q ss_pred HHHHHHHHhhCCCC-ChHHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873 459 YYLNHLMKQIGIVP-GLEHYTCIVGL-LSKAGL--LDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYI 532 (709)
Q Consensus 459 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~ 532 (709)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998865 334 56677788876 467777 58999998754 3445 4778888888999999999999999999
Q ss_pred HhcCCCCchhHH
Q 039873 533 LHMDPNDVGTYI 544 (709)
Q Consensus 533 ~~~~p~~~~~~~ 544 (709)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765543
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=8e-05 Score=64.90 Aligned_cols=117 Identities=8% Similarity=-0.000 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
...-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+++.++..++..|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445566677899999999998854 2344 478899999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHh
Q 039873 553 EKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK 614 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (709)
.|+.+.|++.|+...... ..+|+..++.++.+...+.+.
T Consensus 116 lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred cCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 999999999999887531 135666666666666665554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.00033 Score=77.99 Aligned_cols=141 Identities=7% Similarity=-0.011 Sum_probs=112.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHH
Q 039873 401 RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYT 478 (709)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 478 (709)
.++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+.+++|....+.... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577888888888999999999999999988 688755 677778888999999999999888754 3444 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 479 CIVGLLSKAGLLDEAEKFMRSTP-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~~~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
.+..++.+.|++++|.++|++.- -.|| ..+|-++..++...|+.+.|...|+++++...+-...|..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88888999999999999998663 2344 77888888889999999999999999988765444555443
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.4e-05 Score=50.81 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERP 436 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 436 (709)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999988887
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.0019 Score=72.72 Aligned_cols=165 Identities=8% Similarity=0.026 Sum_probs=85.1
Q ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCC
Q 039873 238 TYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEY 317 (709)
Q Consensus 238 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 317 (709)
.+..|+..+...+++++|.++.+..++.. +.....|-.+...|.+.++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 45556666666666666666666544432 12222222222244455544443333 22233333333
Q ss_pred HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873 318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD 397 (709)
Q Consensus 318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 397 (709)
+.-...+...|... .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++.+
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 32222233333331 1222355556666666666666666666666665 55666666666666666 66666666554
Q ss_pred cCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 398 MRYRDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.. ..|...+++.++.++|.++..
T Consensus 175 AV-----------~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 175 AI-----------YRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HH-----------HHHHhhhcchHHHHHHHHHHh
Confidence 32 225555566666666666665
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00059 Score=63.95 Aligned_cols=126 Identities=15% Similarity=0.055 Sum_probs=89.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 039873 442 VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST--PVKWDVVAWHTLLNASRVH 519 (709)
Q Consensus 442 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~pd~~~~~~ll~~~~~~ 519 (709)
..+-.++...|+-+....+...... ....|......++....+.|++.+|...|++. +-.+|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4445556666666666666555322 33444556666777788888888888877754 2235677888888888888
Q ss_pred CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 520 QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|+.+.|...+.+++++.|.++..++.|+-.|.-.|+.++|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888887776643
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.92 E-value=0.0011 Score=73.78 Aligned_cols=143 Identities=8% Similarity=0.024 Sum_probs=114.0
Q ss_pred CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 039873 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFV 442 (709)
Q Consensus 367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~ 442 (709)
....+...+-.|.....+.|..++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3456688888999999999999999999998873 5 456788899999999999999999999998 567765 455
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLL 513 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll 513 (709)
.+..++.+.|.+++|..+|+++.. ...-+...+..+...+-+.|+.++|...|++.- ..|..--|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 566678899999999999999876 223336788899999999999999999988641 223444444443
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.4e-05 Score=50.72 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 039873 201 VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW 234 (709)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 234 (709)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578889999999999999999999998888887
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00098 Score=62.53 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=92.7
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873 376 NALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG 452 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 452 (709)
..+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -++|..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 445555555666666666665543 234445555666777777777777777777663 2445667777777777777
Q ss_pred cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 039873 453 LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV--KWDVVAWHTLLNASRVHQNYGFGRRIAE 530 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~ 530 (709)
+.++|..-|.+..+-.+-+| ..++.|.-.|.-.|+++.|..++...-. ..|..+-..|.-.....|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777766654322222 3556666666666667766666553311 1245555566666666666666666655
Q ss_pred HHH
Q 039873 531 YIL 533 (709)
Q Consensus 531 ~~~ 533 (709)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 433
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00059 Score=70.24 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=101.4
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 039873 374 VGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLG 452 (709)
Q Consensus 374 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g 452 (709)
...+|+..+...++++.|..+|+++.+.++..+..|+..+...++..+|++++++.... .| |...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666777889999999999998877777777888888889999999999999874 44 4445555556688899
Q ss_pred cHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 039873 453 LVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW 504 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 504 (709)
+++.|..+.+++.+ ..|+ ..+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998864 3555 5589999999999999999999999988654
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.82 E-value=0.087 Score=58.04 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccC
Q 039873 508 AWHTLLNASRVHQNY---GFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKE 574 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 574 (709)
+.+.|+..|++.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-...|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 446777888888765 4566677777788898888888999999999999999999998876666544
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.00022 Score=62.57 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
.....+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556667777778888887777653 2234 467777777788888888888888888888888888888888888888
Q ss_pred cCCchhHHHHHHHHHhC
Q 039873 553 EKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~~ 569 (709)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877653
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.80 E-value=0.0086 Score=67.70 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=107.9
Q ss_pred CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHH-HHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHH
Q 039873 200 DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYV-NAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMI 278 (709)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 278 (709)
+...|..|+..|...+++++|.++.+...+. .|+...+- .+...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4445666677776677777777776654442 34433221 111133333333333222 222
Q ss_pred HHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHH
Q 039873 279 SMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHG 356 (709)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 356 (709)
+...+..++.-...+...|.. .+..++-.+..+|-+.|+.++|...++++.+.. +-|....+.+...++.. +++.|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222333222222223322 123355556666667777777777777766654 23445555666666666 66666
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC
Q 039873 357 DLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAA-EER 435 (709)
Q Consensus 357 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 435 (709)
+++...++.. |....++..+.+++.++..-++.- ++.-+.+.+.+..+ |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccc
Confidence 6666665543 455556666666666655433221 12222223333222 222
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 436 PNHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 436 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
--..++..+-..|....+++++..+++.+.+
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 2233444445555666666777777666643
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.80 E-value=0.0024 Score=65.17 Aligned_cols=144 Identities=17% Similarity=0.090 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGV-LSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIV 481 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 481 (709)
..+--..-.+...|++++|+..++.+... .||...|..+ ...+...++.++|.+.++.++. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444444555667777777777776663 5554444433 3456667777777777777654 3444 34455666
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873 482 GLLSKAGLLDEAEKFMRST--PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 559 (709)
++|.+.|++++|..+++.. ..+-|+..|..|..+|...|+..++... ....|.-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 7777777777777776543 2223467777777777777765555433 33455666777777
Q ss_pred HHHHHHHHhC
Q 039873 560 SKIRKLMKVR 569 (709)
Q Consensus 560 ~~~~~~m~~~ 569 (709)
....+...++
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 137
>PLN02789 farnesyltranstransferase
Probab=97.79 E-value=0.004 Score=62.90 Aligned_cols=184 Identities=10% Similarity=0.092 Sum_probs=130.5
Q ss_pred hHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccc-
Q 039873 380 NMYAKGGNIEAANKVFSDMRYR---DIITWNAMICGYSHHG-LGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGL- 453 (709)
Q Consensus 380 ~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~- 453 (709)
..+.+.+..++|+.+.+++.+. +..+|+.--..+...| .+++++..++++.+. .|+ ..+|..-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3445567888999998887643 4457776666677777 579999999999985 443 3456655444555565
Q ss_pred -HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCc----h
Q 039873 454 -VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVK-WDVVAWHTLLNASRVH---QNY----G 523 (709)
Q Consensus 454 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~---g~~----~ 523 (709)
.+++..+++.+.+. -+-+..+|+...-++.+.|++++|++.++++ ... .|..+|+.....+... |.. +
T Consensus 123 ~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 36778888777652 2345678888888899999999999998865 222 3577888776665544 222 4
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHhhhc----CCchhHHHHHHHHH
Q 039873 524 FGRRIAEYILHMDPNDVGTYILLSNMYAKE----KRWDGVSKIRKLMK 567 (709)
Q Consensus 524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 567 (709)
.+.+...++++++|+|.+++.-+..+|... ++..+|.+......
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 677778899999999999999999999873 34455666665543
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.0053 Score=62.77 Aligned_cols=119 Identities=18% Similarity=0.055 Sum_probs=88.9
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFG 525 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a 525 (709)
....|.+++|+..+..+++. .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34567788888888877552 3334556667778888888888888887754 44566 66677777788888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+.+++.....+|+|+..|..|+.+|..+|+..++...+.++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888877776653
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.7e-05 Score=47.54 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEE 434 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 434 (709)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788889999999999999999999888774
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.00072 Score=69.60 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcH
Q 039873 174 NALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLK 253 (709)
Q Consensus 174 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 253 (709)
.+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++..+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~----------------------- 229 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE----------------------- 229 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------
Confidence 334444444555555555555555554444444555555555555555555555432
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 039873 254 LGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--R-NVVLWTAMVAACFQNEYFEEALNLFCGM 328 (709)
Q Consensus 254 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (709)
. +.+..........+.+.++.+.|..+.+++.+ | +..+|..|..+|.+.|++++|+..++.+
T Consensus 230 ------------~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 230 ------------N-PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 1 22333444444444555555555555555443 2 2345555555555555555555555444
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4e-05 Score=47.40 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 039873 202 FEYNSVLNGLIENECFRGGVEVLGKMVSGSV 232 (709)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 232 (709)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.021 Score=53.88 Aligned_cols=144 Identities=13% Similarity=-0.005 Sum_probs=78.9
Q ss_pred HhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873 379 INMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF 458 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 458 (709)
...|.+.|++++|++.......-+.... =...+.+..+.+-|.+.+++|.+- -+..|.+-|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv--------- 180 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV--------- 180 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH---------
Confidence 3456666666666666655322222222 222334444555566666666541 23334443433332
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873 459 YYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD 536 (709)
Q Consensus 459 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 536 (709)
....-.+.+.+|.-+|+++. ..|+..+.+-....+...|++++|+.+++.++..+
T Consensus 181 -----------------------~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 181 -----------------------KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred -----------------------HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 22222334455555555542 24556666666667777777777777777777777
Q ss_pred CCCchhHHHHHHHhhhcCCchhH
Q 039873 537 PNDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 537 p~~~~~~~~l~~~~~~~g~~~~a 559 (709)
+.++.+...++-.--..|+-.++
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHH
Confidence 77777777776666666766554
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.61 E-value=0.12 Score=53.67 Aligned_cols=211 Identities=10% Similarity=0.057 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC---CHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHH
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG---NIEAANKVFSDMRY----RDIITWNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (709)
+++..+++..+..-...+..+|..+.+.--..- ..+.....+++... .-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554433334445544443211111 13344444444431 22346777788777888889999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 039873 427 QNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP---V 502 (709)
Q Consensus 427 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 502 (709)
.+..+.+..+ +....++++.-++ +++.+-|..+|+.-++++|-.|- --.+.++-+...++-..|+.+|++.- +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4556666666554 57899999999988776655443 55678889999999999999998652 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC----chhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 503 KWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND----VGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 503 ~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
.|| ...|..+|.--..-|++.....+-++....-|.+ ...-..+++.|.-.+.+..-..-++.|-
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~ 537 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFLG 537 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhhh
Confidence 344 6789999999899999999999988877654421 1234566778888887777666666664
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.12 Score=52.25 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=89.7
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 039873 376 NALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 455 (709)
+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566788999999999888889999999999999999999877665432 223477888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039873 456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASR 517 (709)
Q Consensus 456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~ 517 (709)
+|..+...+ .+..-+.+|.++|++.+|.+.--+. .|...+..+...|.
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 988777652 2356788899999999998774433 25555554444443
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.56 E-value=0.0025 Score=55.77 Aligned_cols=113 Identities=6% Similarity=-0.033 Sum_probs=80.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 039873 425 LFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV 502 (709)
Q Consensus 425 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 502 (709)
.|++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|.+.++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 44543 34555666677788888888888877552 2335667778888888888888888877644 23
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 503 KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 503 ~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 4677777778888899999999999999999887754
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.22 Score=55.05 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=141.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHH--HccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChh
Q 039873 42 DSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLY--AKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLL 116 (709)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 116 (709)
..+.+..|.+....+.+..+ |. .|...+.++ .+.|+.++|..+++.... .|..|...+-..|...+..+
T Consensus 21 d~~qfkkal~~~~kllkk~P-----n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHP-----NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCC-----Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 45677788888888777643 22 233344443 478999999988887653 47778888899999999999
Q ss_pred HHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----------Ch
Q 039873 117 ETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCL----------DV 186 (709)
Q Consensus 117 ~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~ 186 (709)
+|..+|+... +..|+......++.++.+.+++.+-.++--++-+. ++...+.+=+.++.+.+.- -+
T Consensus 95 ~~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 95 EAVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999876 46788888888899999888877655554444443 3344454444555554321 12
Q ss_pred HHHHHHHhhCCCCC-c-cc---HHHHHHHHHhCCCccHHHHHH-HHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHH
Q 039873 187 EMAKRLLDLLPGYD-V-FE---YNSVLNGLIENECFRGGVEVL-GKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHS 260 (709)
Q Consensus 187 ~~A~~~f~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 260 (709)
.-|.+.++.+.+.+ . .+ .-.-...+-..|++++|++++ ....+.-...+...-+--+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34666666665544 1 11 111123344578889999888 444443333344444566677778888888888888
Q ss_pred HHHHcCC
Q 039873 261 QMLKSDI 267 (709)
Q Consensus 261 ~~~~~g~ 267 (709)
.++..|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8888763
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.50 E-value=0.00027 Score=53.57 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC-CchhHHHHHHHHHh
Q 039873 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK-RWDGVSKIRKLMKV 568 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 568 (709)
++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999 79999999988765
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.47 E-value=0.0036 Score=55.57 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 481 VGLLSKAGLLDEAEKFMRSTPV-KWDV----VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~~~~-~pd~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
...+...|++++|.+.|+...- .||. ...-.|...+...|++++|+..++.. .-.+..+..+..++++|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 3444445555555555443211 1221 12223334445555555555555442 1122233455566666666666
Q ss_pred chhHHHHHHH
Q 039873 556 WDGVSKIRKL 565 (709)
Q Consensus 556 ~~~a~~~~~~ 565 (709)
+++|+..|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.47 E-value=0.0012 Score=53.09 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 554 (709)
+..+...+...|++++|.+.++.. ...|+ ...|..+...+...++++.|.+.++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888887753 23343 4667777778888899999999999999888888888888999999999
Q ss_pred CchhHHHHHHHHHh
Q 039873 555 RWDGVSKIRKLMKV 568 (709)
Q Consensus 555 ~~~~a~~~~~~m~~ 568 (709)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988887764
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.36 E-value=0.12 Score=51.40 Aligned_cols=240 Identities=15% Similarity=0.106 Sum_probs=148.1
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCc--cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH
Q 039873 315 NEYFEEALNLFCGMEYEAIRPNE--FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN 392 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 392 (709)
.|++++|.+-|+.|... |.. .-+..+.-...+.|+.+.++++-+..-..- +.-.-...+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 35555555555555431 111 112222223345566666666655554432 222345566777778888888888
Q ss_pred HHHhhcC-----CCChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 039873 393 KVFSDMR-----YRDII--TWNAMICGYS---HHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYL 461 (709)
Q Consensus 393 ~~f~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~ 461 (709)
++.+.-. ++|+. .--.|+.+-+ -..+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8877544 34432 2222332221 12345666666666555 678755 3344456788999999999999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH--HHH--HHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873 462 NHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA--EKF--MRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMD 536 (709)
Q Consensus 462 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~~--~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 536 (709)
+.+ +...|....+...+ +.|.|+.... ... +.+| +|| ..+.-++..+-...|++..|..-.+.+....
T Consensus 287 E~a---WK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETA---WKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHH---HhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 988 45577766554433 4556653222 222 3444 454 6666677778888999999999999999999
Q ss_pred CCCchhHHHHHHHhhhc-CCchhHHHHHHHHHh
Q 039873 537 PNDVGTYILLSNMYAKE-KRWDGVSKIRKLMKV 568 (709)
Q Consensus 537 p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 568 (709)
|.. +.|..|.++-... |+-.+++...-+...
T Consensus 360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred chh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 865 6899999987654 998888888776654
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.054 Score=51.16 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=70.9
Q ss_pred HhHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 039873 379 INMYAKGGNIEAANKVFSDMRYRD-IITWNAMICGYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL 453 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 453 (709)
+..+.|..+++-|.+.+++|.+-| -.+.+.|..++.+ .++..+|.-+|++|-+. ..|+..+.+....+|...|+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334555667777777777777543 3344445444433 34577888888888764 67888888888888888888
Q ss_pred HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 039873 454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE 492 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (709)
+++|..+++....+. ..+..+...+|-.-...|...+
T Consensus 223 ~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence 888888888876642 2233344444444444444433
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.04 Score=51.66 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 039873 377 ALINMYAKGGNIEAANKVFSDMRYRDIITWNAM---ICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL 453 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 453 (709)
-++-+...+|+.+.|..+++.+..+=+.++... ..-+-..|++++|+++++...+.. +.|.+++..=+...-..|.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 334444556777777777776653212222211 122455788899999999988865 4466677666656666677
Q ss_pred HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh---cCCchHHHHH
Q 039873 454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWD-VVAWHTLLNASRV---HQNYGFGRRI 528 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~pd-~~~~~~ll~~~~~---~g~~~~a~~~ 528 (709)
--+|++-+....+ .+..|.+.|.-+.++|...|++++|.=.++++- +.|- +..+..+...+.. ..|.+.+...
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788887777766 467788899999999999999999988877652 3454 4444445444332 3478899999
Q ss_pred HHHHHhcCCCCc
Q 039873 529 AEYILHMDPNDV 540 (709)
Q Consensus 529 ~~~~~~~~p~~~ 540 (709)
+++.+++.|.+.
T Consensus 214 y~~alkl~~~~~ 225 (289)
T KOG3060|consen 214 YERALKLNPKNL 225 (289)
T ss_pred HHHHHHhChHhH
Confidence 999999988553
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.0043 Score=52.75 Aligned_cols=96 Identities=8% Similarity=-0.051 Sum_probs=43.5
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVH 519 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~ 519 (709)
..+...|++++|...|..+.+..+-.+ ....+..+..++.+.|++++|.+.++.. ...|+ ..++..+...+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence 333444444444444444433211111 0122333444444455555554444432 11122 33445555555566
Q ss_pred CCchHHHHHHHHHHhcCCCCch
Q 039873 520 QNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
|+.+.|...++++++..|++..
T Consensus 90 ~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 90 GDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred CChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666665543
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.32 E-value=0.0029 Score=65.46 Aligned_cols=92 Identities=13% Similarity=-0.043 Sum_probs=40.9
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFG 525 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a 525 (709)
....|++++|...|..+++. .+.+...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..+|...|+++.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 33445555555555554432 1112334444444444555555555444322 22232 33444444444444555555
Q ss_pred HHHHHHHHhcCCCCch
Q 039873 526 RRIAEYILHMDPNDVG 541 (709)
Q Consensus 526 ~~~~~~~~~~~p~~~~ 541 (709)
+..++++++++|++..
T Consensus 90 ~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 90 KAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHhCCCCHH
Confidence 5555555555544433
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.32 E-value=0.00026 Score=56.08 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 565 (709)
...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++++
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33444455555555555555555555 444444445555556666666666666666653
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.30 E-value=0.0029 Score=53.81 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHH
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILL 546 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 546 (709)
..+-.++..+.+.|++++|.+.++.. ...|+ ...+..+...+...|+++.|...++.++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788899999999999998765 22343 3456668888999999999999999999988775 4578899
Q ss_pred HHHhhhcCCchhHHHHHHHHHhCC
Q 039873 547 SNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 547 ~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
+.+|.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998754
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.00063 Score=50.76 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 512 LLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 512 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888888888888887653
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.27 E-value=0.013 Score=63.48 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+..+.++.-.....|++++|...++++++++| +...|..++..|...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455554444455666666666666666666 345666666666666666666666666554
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.26 E-value=0.013 Score=52.08 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh--HHHHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL--EHYTC 479 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 479 (709)
|..++..+ ..++...+.+.++++.... |+. .....+...+...|++++|...|+.+... .-.|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33344444 3666777777777776642 322 22333445566777777777777777653 222221 23334
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873 480 IVGLLSKAGLLDEAEKFMRSTPVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYI 532 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~~~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 532 (709)
|...+...|++++|+..++..+-. .....+..+...+...|+.++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566777777777777777664322 12445555666777778888887777764
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.0094 Score=54.69 Aligned_cols=130 Identities=17% Similarity=0.173 Sum_probs=85.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHH
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYT 478 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 478 (709)
....+..+...|...|++++|+..|++....+..++ ...+..+...+.+.|++++|...+....+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 344667777778888888888888888876433332 246667777778888888888888877652 23 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 479 CIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
.+..+|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666776766665554332211 112577888888888888876 5566666655554
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.039 Score=51.71 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=129.4
Q ss_pred cCCHHHHHHHHhhcCC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccccH
Q 039873 385 GGNIEAANKVFSDMRY--------RDI-ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVL-SACGHLGLV 454 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~ 454 (709)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|...++++... + |.+.-...+= .-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888877752 222 24455566667788899999999998875 3 5543222211 123446889
Q ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873 455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST--PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYI 532 (709)
Q Consensus 455 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 532 (709)
++|.++++....+ -+.|..++-.-+-+.-..|+--+|++-+... .+-.|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998764 2445666766666676777777777654432 12358999999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHhhhcC---CchhHHHHHHHHHhC
Q 039873 533 LHMDPNDVGTYILLSNMYAKEK---RWDGVSKIRKLMKVR 569 (709)
Q Consensus 533 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 569 (709)
+-+.|-++-.+..+++.+.-.| +++-+++++.+..+-
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999988889999887666 455567777766653
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0078 Score=57.83 Aligned_cols=99 Identities=17% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCch
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYG 523 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~ 523 (709)
-..+.+++.+|+..|..+++ +.| |...|..-..+|.+.|.++.|.+-.+ .+.+.|. .-+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 34566777888877777754 344 45556666777888888888877654 3344555 567778888888888888
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 524 FGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 524 ~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
+|++.|+++++++|++...-..|-.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 8888888888888888644444433
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.14 E-value=0.019 Score=57.30 Aligned_cols=143 Identities=11% Similarity=0.100 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA-CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG 482 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 482 (709)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367788888888888899999999988543 2223333333222 333577778999999998864 445668899999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873 483 LLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY 550 (709)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 550 (709)
.+.+.|+.+.|+.+|++. ..-|. ...|...+.--.++|+.+....+.+++.+.-|++. ....+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999854 22233 35999999999999999999999999999887743 334444444
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.37 Score=48.72 Aligned_cols=109 Identities=13% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873 273 INSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA 352 (709)
Q Consensus 273 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 352 (709)
+.+..|.-+...|+...|.++-.+..-++..-|-..|.+|+..++|++-.++-.. +-.++-|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667889999999999999889999999999999999999987765432 2245889999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873 353 LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD 397 (709)
Q Consensus 353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 397 (709)
..+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888776551 225678899999999999876443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0042 Score=56.76 Aligned_cols=94 Identities=7% Similarity=-0.157 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
...|..++..+...|++++|...|++. .+.|+ ..+|..+...+...|++++|+..+++++++.|....++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445666777777888888888887644 22232 3578888889999999999999999999999988888888888
Q ss_pred Hhh-------hcCCchhHHHHHHHHH
Q 039873 549 MYA-------KEKRWDGVSKIRKLMK 567 (709)
Q Consensus 549 ~~~-------~~g~~~~a~~~~~~m~ 567 (709)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 7888887766666543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.10 E-value=0.0054 Score=56.29 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666677777777766533 11122 35677777888888899999999999988888888888888888
Q ss_pred hhhcCC
Q 039873 550 YAKEKR 555 (709)
Q Consensus 550 ~~~~g~ 555 (709)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.00089 Score=50.45 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=45.4
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...|+++.|++.++++++.+|++......++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999877653
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.00 E-value=0.043 Score=50.10 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHH
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTC 479 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 479 (709)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34666677777778888888888888776422221 236666777777788888888887776542 222 334445
Q ss_pred HHHHHH
Q 039873 480 IVGLLS 485 (709)
Q Consensus 480 li~~~~ 485 (709)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555554
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.97 E-value=0.013 Score=46.84 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.++...+. .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 344455555566666666666665553 222 234444444555555555555555554331 111223344444444
Q ss_pred HhcCCHHHHHHHH
Q 039873 485 SKAGLLDEAEKFM 497 (709)
Q Consensus 485 ~~~g~~~~A~~~~ 497 (709)
...|+.++|.+.+
T Consensus 79 ~~~~~~~~a~~~~ 91 (100)
T cd00189 79 YKLGKYEEALEAY 91 (100)
T ss_pred HHHHhHHHHHHHH
Confidence 4444444444443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.95 E-value=0.013 Score=60.55 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=80.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHh
Q 039873 409 MICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSK 486 (709)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 486 (709)
-...+...|++++|+++|++.++. .| +...|..+..++...|++++|+..++.++.. .| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 55 4567888888999999999999999998653 44 46678889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 039873 487 AGLLDEAEKFMRST-PVKWDVVAWHTLLNAS 516 (709)
Q Consensus 487 ~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~ 516 (709)
.|++++|...|++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999998753 4556644444444433
No 171
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.83 Score=49.72 Aligned_cols=336 Identities=13% Similarity=0.030 Sum_probs=184.2
Q ss_pred CCCCCCChhhHHH-----HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhhCCC-
Q 039873 128 GDNLEPNEYIFSI-----VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCL---DVEMAKRLLDLLPG- 198 (709)
Q Consensus 128 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~- 198 (709)
.-|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456655555544 4555566677777777765553221111 466666666666653 33444555555555
Q ss_pred -CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCC----CChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHH
Q 039873 199 -YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVR----WDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFI 273 (709)
Q Consensus 199 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 273 (709)
...++|..+..-..+.|+.+-|..+++.=...+-. .+-.-+...+.-+.+.|+.+...+++-++.+.- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 56788999998888999999998887653222211 122234555666667777777666666554431 0000
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHH--H----hCCCCCCccchHHHHHH
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLET-RNVVLWTAMVAACFQNEYFEEALNLFCGM--E----YEAIRPNEFTFAVMLNS 346 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~----~~g~~pd~~t~~~ll~~ 346 (709)
+. .-..+...|..+|.+... .|..+ +..+-+.++-.+++.-|..- . ..|..|+ ....-.+
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~ 647 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANA 647 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHH
Confidence 11 111223344444444322 12111 11112222222222222110 0 1122222 3334444
Q ss_pred HhccCChhHHHHH----------HHHHH-HhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 039873 347 AAGLSALRHGDLL----------HAHIE-KSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSH 415 (709)
Q Consensus 347 ~~~~~~~~~a~~i----------~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 415 (709)
|++........+. ...+. +.|..-...+.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 5544432211111 11111 123222223334444556677888889988888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK 495 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (709)
.+++++-+++-+.++ .++-|.-...+|.+.|+.++|..++-.. .|.. -.+.+|.++|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv---~~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV---GGLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc---CChH-------HHHHHHHHhccHHHHHH
Confidence 888887666655543 1455666788888999999988887654 1221 46788888888888887
Q ss_pred H
Q 039873 496 F 496 (709)
Q Consensus 496 ~ 496 (709)
+
T Consensus 792 ~ 792 (829)
T KOG2280|consen 792 L 792 (829)
T ss_pred H
Confidence 6
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.0029 Score=60.70 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=77.2
Q ss_pred HHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873 482 GLLSKAGLLDEAEKFMRS-TPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~-~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 559 (709)
+-+.+.+++++|+..+.+ +.+.| |++.|..-..+|.+.|.++.|.+-.+..+.++|....+|..|+-+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 446678999999998874 45565 5888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 039873 560 SKIRKLMKV 568 (709)
Q Consensus 560 ~~~~~~m~~ 568 (709)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999987765
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0036 Score=46.59 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 480 IVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
+...+.+.|++++|.+.|+.. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678889999999888754 33464 77888888899999999999999999999999764
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.82 Score=49.17 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=64.7
Q ss_pred HhHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873 379 INMYAKGGNIEAANKVFSDMRYRDI---ITWNAMICGYS----HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL 451 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 451 (709)
|.++.+.|+.-+|.+++.+|.++.. +.|..+=..|. -..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 5667778887777777777763211 11111111111 11223344444455555554433322 1122
Q ss_pred ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH---HHhC-CCCCCHHHHHHHHHHHHhcCCchHHHH
Q 039873 452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF---MRST-PVKWDVVAWHTLLNASRVHQNYGFGRR 527 (709)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~ 527 (709)
|...++-++.+..-+ | ....|+-.|..--...|+++.|+.. ++.. .+-|-..+|..|.-+-+....+...-+
T Consensus 1003 ~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 333333333332111 1 1234555566666677888888765 1111 122444445444333333333444444
Q ss_pred HHHHHHhc
Q 039873 528 IAEYILHM 535 (709)
Q Consensus 528 ~~~~~~~~ 535 (709)
+|-++.+.
T Consensus 1079 AfmkLe~~ 1086 (1189)
T KOG2041|consen 1079 AFMKLEAF 1086 (1189)
T ss_pred HHHHHHhh
Confidence 44444433
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0023 Score=48.94 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=50.4
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 514 NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
..+...++++.|.++++.+++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999999887643
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.90 E-value=0.0032 Score=49.76 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=41.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 039873 416 HGLGREALTLFQNMLAAEE-RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 493 (709)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4666777777777766322 11333444456666667777777666655 1 11221 22223345666666666666
Q ss_pred HHHHH
Q 039873 494 EKFMR 498 (709)
Q Consensus 494 ~~~~~ 498 (709)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.89 E-value=0.57 Score=46.86 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhh-CCCCC--hHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEER-----PNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQI-GIVPG--LEH 476 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~ 476 (709)
+..+...+.+.|++++|+++|++....-.. .+.. .|...+-.+...|++..|...++...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 345667788888999999999888764322 1221 23333445566788888888888764321 22222 234
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhCC
Q 039873 477 YTCIVGLLSK--AGLLDEAEKFMRSTP 501 (709)
Q Consensus 477 ~~~li~~~~~--~g~~~~A~~~~~~~~ 501 (709)
...|++++-. ...+++|..-|+++.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 5566666643 345777777777764
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.017 Score=50.88 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHH
Q 039873 483 LLSKAGLLDEAEKFMRSTP-V-KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVS 560 (709)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~-~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 560 (709)
-+-..|++++|..+|+-+- . .-|...|..|...|...++++.|...+..+..++++|+.++...+..|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 3457899999999988441 1 2356678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 039873 561 KIRKLMKV 568 (709)
Q Consensus 561 ~~~~~m~~ 568 (709)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99998875
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.86 E-value=0.013 Score=60.93 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=63.6
Q ss_pred cHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873 203 EYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG 282 (709)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 282 (709)
+..++|+.|.+.|..++++.++..=...|+-||.+|++.++..+.+.|++..|.++..+|...+...+..++..-+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 44578888888888888888888888888888888888888888888888888888888887776666666655555555
Q ss_pred hc
Q 039873 283 KC 284 (709)
Q Consensus 283 ~~ 284 (709)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 55
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.0094 Score=54.73 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=96.2
Q ss_pred CChhHHhhhchHHhhhC-CCCCCcchHHHHHHHhc-----CCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcc
Q 039873 8 TSPQAATRCAPFLFKQN-RAPPSVEDTLKLLKHSA-----DSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKC 81 (709)
Q Consensus 8 ~~p~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~ 81 (709)
..+...+......|... +-.-+..+|..++..+. +.|.++--......|.+.|++ .|..+|+.|++.+=|
T Consensus 24 ~~~~~~l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~---kDL~~Y~~LLDvFPK- 99 (228)
T PF06239_consen 24 KKPSKSLAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE---KDLEVYKALLDVFPK- 99 (228)
T ss_pred CCCcccccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc---ccHHHHHHHHHhCCC-
Confidence 44445555666666654 44668889999998875 456777777788889999999 999999999998886
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCC-chHHHHHHHH
Q 039873 82 NQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGR-GAEGRQCHGY 160 (709)
Q Consensus 82 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~ 160 (709)
|.+- -+.+|+.+ -.-| ..+-+-|++++++|. ..|+.||..|+..++..+++.+. +....++.-+
T Consensus 100 g~fv-p~n~fQ~~-----------F~hy--p~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYW 164 (228)
T PF06239_consen 100 GKFV-PRNFFQAE-----------FMHY--PRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYW 164 (228)
T ss_pred CCcc-cccHHHHH-----------hccC--cHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4432 22222222 1111 123467999999999 89999999999999999987765 3444555555
Q ss_pred HHH
Q 039873 161 VFK 163 (709)
Q Consensus 161 ~~~ 163 (709)
|-+
T Consensus 165 mpk 167 (228)
T PF06239_consen 165 MPK 167 (228)
T ss_pred HHH
Confidence 544
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.82 E-value=0.0008 Score=42.31 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873 529 AEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 529 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.088 Score=49.55 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccC--CCH--------hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHH
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLET--RNV--------VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVM 343 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 343 (709)
+++|...|.-...+++-...|+.=.. ..+ ...+.++..+...|.+.-.+.++++.++...+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555555555555555544322 222 34456777777788888899999999886656677777888
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCC-----hhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHH
Q 039873 344 LNSAAGLSALRHGDLLHAHIEKSGFKEH-----LIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSH 415 (709)
Q Consensus 344 l~~~~~~~~~~~a~~i~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 415 (709)
.+...+.|+.+.+...++...+..-..+ ..+.......|.-..++..|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999998776433333 33333444456667889999999988874 456666666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPNHVTFVGVL 445 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 445 (709)
.|+..+|++..+.|.+ ..|...+-.+++
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 7899999999999998 466655554443
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.79 E-value=0.011 Score=48.01 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCC--------cHHHHHHHHHHHHcCCCCchHHHH
Q 039873 205 NSVLNGLIENECFRGGVEVLGKMVSGSV-RWDSVTYVNAFGLSASLKD--------LKLGLQVHSQMLKSDIEPDVFINS 275 (709)
Q Consensus 205 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 275 (709)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 9999999999998876532 335667889999999999999999
Q ss_pred HHHHHHHh
Q 039873 276 AMISMYGK 283 (709)
Q Consensus 276 ~li~~y~~ 283 (709)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887765
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.77 E-value=0.03 Score=58.15 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCCccchHHHHHHHhccCChhHHHHHHHHHHHh--CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHH
Q 039873 334 RPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS--GFKEHLIVGNALINMYAKGGNIEAANKVFSDMR----YRDIITWN 407 (709)
Q Consensus 334 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~ 407 (709)
+.+...+..+++.+....+++.++.++-..... ....-..+..++|..|.+.|..+.+..++..=. -||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555556666666666666666655555443 222223333466666666666666666665433 25666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL 451 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 451 (709)
.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666666556666665555555543
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.72 E-value=0.73 Score=46.08 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=13.6
Q ss_pred hHHHhHHHh--cCCHHHHHHHHhhcCCCCh
Q 039873 376 NALINMYAK--GGNIEAANKVFSDMRYRDI 403 (709)
Q Consensus 376 ~~li~~y~~--~g~~~~A~~~f~~~~~~~~ 403 (709)
..|+.+|-. ...+++|..-|+.+.+-|.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 444444433 2346666666766665543
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.33 Score=51.59 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=6.8
Q ss_pred CcchHHHHHH
Q 039873 98 NVVSYSSLMT 107 (709)
Q Consensus 98 ~~~~~~~li~ 107 (709)
+.++||+...
T Consensus 498 nSV~wNT~~E 507 (1081)
T KOG1538|consen 498 NSVAWNTQCE 507 (1081)
T ss_pred ceEEeecccc
Confidence 5678887643
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.04 Score=54.88 Aligned_cols=133 Identities=13% Similarity=0.055 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH-HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS-AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY 382 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 382 (709)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666665321 1111222211111 22234555577777666654 456667777777888
Q ss_pred HhcCCHHHHHHHHhhcCC--C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873 383 AKGGNIEAANKVFSDMRY--R----DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT 440 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 440 (709)
.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+ .-|+..+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~ 142 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNS 142 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-H
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhH
Confidence 888888888888887653 1 234777777777777877777777777776 3444333
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.64 E-value=0.016 Score=47.02 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCCccchHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhH
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEYEAI-RPNEFTFAVMLNSAAGLS--------ALRHGDLLHAHIEKSGFKEHLIV 374 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~ 374 (709)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556677777999999999999999999 899999999999876643 23455677888888888888888
Q ss_pred HhHHHhHHHh
Q 039873 375 GNALINMYAK 384 (709)
Q Consensus 375 ~~~li~~y~~ 384 (709)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.60 E-value=0.16 Score=51.72 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=94.9
Q ss_pred hHHHhcCCHHHHHHHHhhcCCC---Ch----hhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039873 380 NMYAKGGNIEAANKVFSDMRYR---DI----ITWNAMICGYSH---HGLGREALTLFQNMLAAEERPNHVTFVGVLSACG 449 (709)
Q Consensus 380 ~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 449 (709)
-.|-...+++...++.+.+... ++ ..--...-++-+ .|+.++|++++..+....-.++..||..+...|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3466677777777777776642 11 111123344555 6888888888888666556677777776665442
Q ss_pred ---------ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH----HHHH---H----hCC---CCCCH
Q 039873 450 ---------HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA----EKFM---R----STP---VKWDV 506 (709)
Q Consensus 450 ---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~----~~~---~~pd~ 506 (709)
.....++|...|.+. +.+.|+..+.-.++.++...|.-.+. .++- . +-+ -..|-
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 123467777777654 55566655444455555555542222 2221 1 111 12345
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
..+.+++.++.-.|+.+.|.+..+++.++.|+.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 555778888888888888888888888887654
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.067 Score=53.69 Aligned_cols=263 Identities=10% Similarity=-0.047 Sum_probs=154.7
Q ss_pred HHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChh
Q 039873 279 SMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALR 354 (709)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~ 354 (709)
..+.+..++.+|+..+....+ .++.-|..-...+..-|++++|+--.++-.+. +|. ..+..-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 455666777777777765443 45666777777777788888877666554432 222 223333444444445555
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHH-HHHHHHcCChHHHHHHHHH
Q 039873 355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAM-ICGYSHHGLGREALTLFQN 428 (709)
Q Consensus 355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 428 (709)
+|.+.++. ...+ ....|+..++.+.. |--.+|..+ ..++...|++++|.+.--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 55444431 0000 11222222222221 222333333 2345566777777776655
Q ss_pred HHHCCCCCCHHHHHHHHH--HHhccccHHHHHHHHHHHHHhhCCCCChH-------------HHHHHHHHHHhcCCHHHH
Q 039873 429 MLAAEERPNHVTFVGVLS--ACGHLGLVQEGFYYLNHLMKQIGIVPGLE-------------HYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 429 m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------------~~~~li~~~~~~g~~~~A 493 (709)
.++. .++. .+...++ ++-..++.+.|...|++.+ .+.|+-. .+.-=.+...+.|++.+|
T Consensus 195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5542 2221 1111222 2334566777777776653 2334321 112223456688999999
Q ss_pred HHHHH-hCCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 494 EKFMR-STPVKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 494 ~~~~~-~~~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
.+.+. .+.+.|+ .-.|.....+..+.|+.++|+.-.+.+++++|.-...|..-++.+...++|++|.+-++...
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 4455444 44555556677789999999999999999998877888888899999999999999998876
Q ss_pred hC
Q 039873 568 VR 569 (709)
Q Consensus 568 ~~ 569 (709)
+.
T Consensus 349 q~ 350 (486)
T KOG0550|consen 349 QL 350 (486)
T ss_pred hh
Confidence 54
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.052 Score=52.60 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=82.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhcCCCCchhHHH
Q 039873 471 VPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH---QNYGFGRRIAEYILHMDPNDVGTYIL 545 (709)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 545 (709)
+-|..-|--|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456778888999999999999998887643 3334 466676666654432 25688999999999999999999999
Q ss_pred HHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 546 LSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 546 l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
|.-.+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.60 E-value=0.059 Score=45.50 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=66.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHH
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLL 484 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 484 (709)
.+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....++-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345677788999999999999999887665 33677788889999999999999998876533211 122222344567
Q ss_pred HhcCCHHHHHHHHH
Q 039873 485 SKAGLLDEAEKFMR 498 (709)
Q Consensus 485 ~~~g~~~~A~~~~~ 498 (709)
...|+.++|++.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 78899999988753
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.019 Score=57.25 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=91.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHH---HHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh-------CCCC-CCHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHL---MKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRS-------TPVK-WDVV 507 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~-pd~~ 507 (709)
.|..+.+.|.-.|+++.|+..++.- .+++|-... ...+..|.+.+.-.|+++.|.+.++. ++-+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678999998887653 234454332 35677888899999999999998763 2211 2355
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc----C--CCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHM----D--PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+.-+|.+.|....+++.|+..+.+=+.+ + ......+.+|+++|...|..++|..+...-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667888888888899999988765442 2 23456889999999999999999887766543
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.53 E-value=0.03 Score=51.51 Aligned_cols=98 Identities=10% Similarity=0.140 Sum_probs=71.2
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 039873 392 NKVFSDM--RYRDIITWNAMICGYSHH-----GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL------------- 451 (709)
Q Consensus 392 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 451 (709)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356667777777777643 66676777788888888888888888888876542
Q ss_pred ---ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873 452 ---GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL 490 (709)
Q Consensus 452 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 490 (709)
..-+-|++++++|.. +|+.||.+++..|++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 134567888888855 79999999999999888877653
No 195
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.51 E-value=0.083 Score=46.39 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=67.4
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 039873 377 ALINMYAKGGNIEAANKVFSDMR--Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL 453 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 453 (709)
.+..-+...|++++|.++|+-+. . .+..-|-.|...+-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 34445567788888888887665 2 355677778888888888888888888887743 2345577777777888888
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 039873 454 VQEGFYYLNHLMKQIGIVP 472 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p 472 (709)
.+.|++.|+..+...+-.|
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHHHHhccCh
Confidence 8888888887766544333
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.0068 Score=45.70 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCC
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQ-NYGFGRRIAEYILHMDP 537 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 537 (709)
...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666777777777777777776632 33454 677777888888888 68888888888888877
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.48 E-value=0.37 Score=51.21 Aligned_cols=70 Identities=11% Similarity=0.000 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCchHHHHH--HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 039873 138 FSIVLSSCSRSGRGAEGRQC--HGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENE 215 (709)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 215 (709)
++..=++|.+.+++.--+-+ ++.+.+.|-.|+... +.+.++-.|.+.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433332 345556676666543 33455667888888888764 56
Q ss_pred CccHHHHHHHHHH
Q 039873 216 CFRGGVEVLGKMV 228 (709)
Q Consensus 216 ~~~~A~~l~~~m~ 228 (709)
....|+++|..|+
T Consensus 660 ~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 660 HENRALEMYTDLR 672 (1081)
T ss_pred chhhHHHHHHHHH
Confidence 7777888887775
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.43 E-value=0.45 Score=42.60 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCHH
Q 039873 434 ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP------VKWDVV 507 (709)
Q Consensus 434 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~pd~~ 507 (709)
+.|....-..+..+....|+..+|...|++... --+.-|....-.+..+....+++.+|...++... -.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456655566677777788888888888877654 1334455666667777777788888877766441 234433
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
-.+...+...|.++.|+..|+.++...|. +..-.....++.++|+.+++..-+..+.+
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34566788899999999999999998774 45566677888999999988776665554
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.42 E-value=0.012 Score=60.55 Aligned_cols=63 Identities=11% Similarity=-0.105 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch---hHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG---TYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...|+.+..++...|++++|+..++++++++|++.. +|..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555542 255555555555555555555555544
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.30 E-value=0.56 Score=45.53 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=37.9
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCC---Hhh---HHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873 277 MISMYGKCGKFSNAKKVFEGLETRN---VVL---WTAMVAACFQNEYFEEALNLFCGMEYEA 332 (709)
Q Consensus 277 li~~y~~~g~~~~A~~~~~~m~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 332 (709)
....+.+.|++++|.+.|+++.... ... .-.++.+|.+.+++++|...|++..+.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444566788888888888876521 122 2234567788888888888888887753
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.27 E-value=0.029 Score=56.01 Aligned_cols=255 Identities=16% Similarity=0.069 Sum_probs=152.8
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCcHHHHHHHHHHHH----cCC-CCchHHHHHHHHH
Q 039873 210 GLIENECFRGGVEVLGKMVSGSVRWDSV----TYVNAFGLSASLKDLKLGLQVHSQMLK----SDI-EPDVFINSAMISM 280 (709)
Q Consensus 210 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~ 280 (709)
-+++.|+.+..+.+|+..++.|.. |.. .|..+-.+|.-.+++++|.++|..=+. .|- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467788888888888888876643 332 455666677777888888887754221 110 0111222233334
Q ss_pred HHhcCChHHHHHHHHhcc-------CC--CHhhHHHHHHHHHHcCC--------------------HhHHHHHHHHHH--
Q 039873 281 YGKCGKFSNAKKVFEGLE-------TR--NVVLWTAMVAACFQNEY--------------------FEEALNLFCGME-- 329 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 329 (709)
+--.|.+++|.-...+-. .+ ....+..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666654332211 11 12233344555554442 234455554321
Q ss_pred --hCCCC-CCccchHHHHHHHhccCChhHHHHHHHHHHH----hCCC-CChhHHhHHHhHHHhcCCHHHHHHHHhhcC--
Q 039873 330 --YEAIR-PNEFTFAVMLNSAAGLSALRHGDLLHAHIEK----SGFK-EHLIVGNALINMYAKGGNIEAANKVFSDMR-- 399 (709)
Q Consensus 330 --~~g~~-pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-- 399 (709)
..|-. .--..|..+-+.|.-.|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 22211 1123456666666778899999988876442 2311 223466778888999999999999887643
Q ss_pred -----CCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873 400 -----YRD--IITWNAMICGYSHHGLGREALTLFQNMLA----AE-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM 465 (709)
Q Consensus 400 -----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 465 (709)
.+. ..+..+|...|.-...+++|+.++.+-.. .+ ..-....+.++..++...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333 34667788888888889999998877443 11 22234578899999999999999887766543
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.23 E-value=0.0056 Score=46.01 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=27.3
Q ss_pred ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873 450 HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 500 (709)
..|++++|.++|+.+.... +-+...+-.++.+|.+.|++++|.+++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666666665431 123445555666666666666666666554
No 203
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=2.5 Score=46.27 Aligned_cols=325 Identities=9% Similarity=-0.001 Sum_probs=178.3
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCC---hHHHHHHHhcCCC--CCcchHHHHHHHH
Q 039873 35 KLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQ---ISIARQLFDNMRQ--RNVVSYSSLMTWY 109 (709)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~ 109 (709)
.++..+...+.+..|.++..++-..-.. +-.++.....-+.+..+ -+-+..+=+++.. ...++|..+.+.-
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~----~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ----GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc----ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 3455556667777777776665432222 24667777777776632 2333344444444 4567788888888
Q ss_pred HhCCChhHHHHHHHHhhhCCCCC----CChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039873 110 LHNGFLLETLKLFKNMVSGDNLE----PNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLD 185 (709)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (709)
...|+++.|..+++.=. ..+-+ .+..-+...|+-+...|+.+...++.-.+.+.-. ...+... ..+
T Consensus 518 y~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s~l~~~------l~~ 587 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RSSLFMT------LRN 587 (829)
T ss_pred HhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HHHHHHH------HHh
Confidence 88899999988876533 22211 1444567777778888888877777666554321 1111111 112
Q ss_pred hHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCccHHHHHHHHH------HhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873 186 VEMAKRLLDLLPG-YDVFEYNSVLNGLIENECFRGGVEVLGKM------VSGSVRWDSVTYVNAFGLSASLKDLKLGLQV 258 (709)
Q Consensus 186 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 258 (709)
...|..++..... .|..+ +..+.+.++-.+++.-|..= ...|..|+ ......+|++........+.
T Consensus 588 ~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred chhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence 2233333333221 11110 11112222222222222110 01122233 23333444444432211111
Q ss_pred ----------HHHHH-HcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 039873 259 ----------HSQML-KSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCG 327 (709)
Q Consensus 259 ----------~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (709)
.+.+. +.|..-.-.+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+++++-.++-+.
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11111 1222222223344455566778888899988888888888888888888888888887766544
Q ss_pred HHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHH
Q 039873 328 MEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVF 395 (709)
Q Consensus 328 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 395 (709)
+. .+.-|.....+|.+.|+.++|..+....-. +.-.+.+|.++|++.+|.++-
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 43 255677788888888888888877654321 114677888888888887653
No 204
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.22 E-value=0.16 Score=55.03 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 464 (709)
..|.++...+...|++++|...+++... +.|+...|..+...+...|+.++|.+.++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444555555555555555 2344445555555555555555555555544
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.21 E-value=1.8 Score=44.49 Aligned_cols=449 Identities=14% Similarity=0.107 Sum_probs=245.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHccCChHHHHHHHhcCCCC-CcchHHHHHHHH--HhCCChh
Q 039873 42 DSKDLKLGKVIHAHLIITTESSR--NENVVLTNSLVNLYAKCNQISIARQLFDNMRQR-NVVSYSSLMTWY--LHNGFLL 116 (709)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~ 116 (709)
+.++..++..++..+.+..-..+ .......+.++++|.-. +++..........+. ....|-.+..++ -+.+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 56788999999998877543300 01134567888888753 455544444444331 134466666553 4678899
Q ss_pred HHHHHHHHhhhCC--CCCC------------ChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC----CCchhHHHHHHH
Q 039873 117 ETLKLFKNMVSGD--NLEP------------NEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL----VFCKYVRNALVE 178 (709)
Q Consensus 117 ~A~~~~~~m~~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~ 178 (709)
.|++.+..-. .. +-.| |..-=+....++...|.+.+|+.+++.++..=+ .-+..+|+.++-
T Consensus 97 kal~~ls~w~-~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 97 KALQALSVWK-EQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHH-hhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9998887665 22 2221 222224456677889999999999888876544 467888888888
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC--CcHHHH
Q 039873 179 LYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLK--DLKLGL 256 (709)
Q Consensus 179 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~ 256 (709)
++++.=-++ +-+.+...=...|--||-.|.+.=+ .++.-.=..+-|...-+..++....-.. .+.--.
T Consensus 176 mlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 176 MLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred HHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 877642222 1122222222235555555544211 1111111123444444444444433222 233334
Q ss_pred HHHHHHHHcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHhcc--------CCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 039873 257 QVHSQMLKSDIEPDV-FINSAMISMYGKCGKFSNAKKVFEGLE--------TRNVVLWTAMVAACFQNEYFEEALNLFCG 327 (709)
Q Consensus 257 ~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (709)
++++.-.+.-+.|+- .+...|+.-+.+ +.+++..+.+.+. ++=+.++..++...++.++..+|-+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555455455553 344555555555 4555555444432 23456788888889999999999888876
Q ss_pred HHhCCCCCCccch-------HHHHHHHh-cc---CChhHHHHHHHHHHHhCCCCChhHHhHHH---hHHHhcCC-HHHHH
Q 039873 328 MEYEAIRPNEFTF-------AVMLNSAA-GL---SALRHGDLLHAHIEKSGFKEHLIVGNALI---NMYAKGGN-IEAAN 392 (709)
Q Consensus 328 m~~~g~~pd~~t~-------~~ll~~~~-~~---~~~~~a~~i~~~~~~~g~~~~~~~~~~li---~~y~~~g~-~~~A~ 392 (709)
+.-. .|+...- ..+-+..+ .- .++..-..+|..+...+++.-.-+ .-|+ .-|-+.|. -++|.
T Consensus 324 L~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv-h~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 324 LKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV-HYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHHHHHhcCCccHHHH
Confidence 6542 3433211 11111111 11 122222334444444333221111 1121 22334444 77888
Q ss_pred HHHhhcC---CCChhhHHHHHH----HHHHc---CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhccccHHH
Q 039873 393 KVFSDMR---YRDIITWNAMIC----GYSHH---GLGREALTLFQNMLAAEERPNHV----TFVGVLSA--CGHLGLVQE 456 (709)
Q Consensus 393 ~~f~~~~---~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a--~~~~g~~~~ 456 (709)
++++.+. .-|..+-|.+.. .|.+. ....+-+.+-+-..+.|+.|-.+ .-+.+-.| .-..|++.+
T Consensus 401 nLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 401 NLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 8887765 235544444322 22221 12333344444455678777433 33333333 345688888
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 039873 457 GFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTL 512 (709)
Q Consensus 457 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~l 512 (709)
+.-+-... ..+.|++.+|.-+.-.+....+++||.+++..+| |+..+|++-
T Consensus 481 c~~ys~WL---~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 481 CYLYSSWL---TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHH---HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 87655554 3678899999988888888999999999999986 677777653
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.16 E-value=0.35 Score=47.00 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=101.2
Q ss_pred HHhHHHhcCCHHHHHHHHhhcCC--CCh-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 039873 378 LINMYAKGGNIEAANKVFSDMRY--RDI-I---TWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACG 449 (709)
Q Consensus 378 li~~y~~~g~~~~A~~~f~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~ 449 (709)
....+.+.|++++|.+.|+++.. |+. . ..-.++.+|.+.+++++|...|++..+. -|+ ..-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 44455667888888888888763 222 1 1233556777888888888888888774 333 233433343332
Q ss_pred c--cc---------------c---HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 039873 450 H--LG---------------L---VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAW 509 (709)
Q Consensus 450 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~ 509 (709)
. .+ + ..+|...|+.+++ -|-.+.-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHH---HHHHH
Confidence 1 10 1 1233333433333 3333333445544433321 11111
Q ss_pred H--HHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 510 H--TLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 510 ~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
. .+..-|.+.|.+.-|..-++.+++.-|+. ......+..+|.+.|..++|..+.....
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 23334778899999999999999877653 4567788899999999999999887664
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=2.5 Score=45.67 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=66.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHh----CCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873 309 VAACFQNEYFEEALNLFCGMEY----EAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384 (709)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 384 (709)
|..+-+.|+.-+|.+++.+|.+ .+.+|-..--.-++.+..-. +..++..-.+...+.|...+... +..
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE-~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE-NHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence 4455667777777777777754 33443332222233332211 11111112222223443322211 223
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHH--HHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 039873 385 GGNIEAANKVFSDMRYRDIITWNAMICG--YSHHGLGREALTLFQNMLA-AEERPNHVTFVGVLSACGHLGLVQEGFYYL 461 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 461 (709)
.|-+.++-++.+..- +....|.-||.+ ....|..+.|++.--.+.. ..+-|-...|..+.-+.+....+...-+.|
T Consensus 1002 s~~l~~~~ri~~n~W-rgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTW-RGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred hhhhhhHHHHHHhhh-hhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 444555555554322 334455555544 4456888888876544432 124555556655544433333443333333
Q ss_pred HH
Q 039873 462 NH 463 (709)
Q Consensus 462 ~~ 463 (709)
-+
T Consensus 1081 mk 1082 (1189)
T KOG2041|consen 1081 MK 1082 (1189)
T ss_pred HH
Confidence 33
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.10 E-value=0.13 Score=43.44 Aligned_cols=105 Identities=5% Similarity=-0.051 Sum_probs=59.9
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHh
Q 039873 208 LNGLIENECFRGGVEVLGKMVSGSVRWD--SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE--PDVFINSAMISMYGK 283 (709)
Q Consensus 208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~ 283 (709)
...+-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++......-. .+..+...+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455667778888888888777776544 234556666677777777777777776654211 022222223335556
Q ss_pred cCChHHHHHHHHhccCCCHhhHHHHHHHH
Q 039873 284 CGKFSNAKKVFEGLETRNVVLWTAMVAAC 312 (709)
Q Consensus 284 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 312 (709)
.|+.++|.+.+-....++...|.--|..|
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776666554433333333333333
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.95 E-value=0.014 Score=39.29 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999888777653
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.36 Score=45.59 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=97.3
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCC--CC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRY--RD--------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGV 444 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 444 (709)
+++|+..|.-..-+++-...|+.-.. .. ...-+.++..+.-+|.+.-.+.++++.++..-+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 35555555544444444444443221 12 223456666677777888888888888886545566677777
Q ss_pred HHHHhccccHHHHHHHHHHHHHhh----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 039873 445 LSACGHLGLVQEGFYYLNHLMKQI----GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK--WDVVAWHTLLNASRV 518 (709)
Q Consensus 445 l~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--pd~~~~~~ll~~~~~ 518 (709)
.+.-.+.|+.+.|..+|+...+.. +++-...+...+...|.-+.++.+|...+.+.+.. .|++..|.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777888889888888888665432 22223333334444555666777777777665432 123333333323334
Q ss_pred cCCchHHHHHHHHHHhcCCCC
Q 039873 519 HQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 519 ~g~~~~a~~~~~~~~~~~p~~ 539 (709)
.|+...|.+..+.+.+..|..
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 566777777777777777653
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.55 Score=39.45 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=81.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+ |-..|. ..||++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI----GKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-G----------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH----hhhcCc----------hhhcchHHHH
Confidence 356677777777777653 23334444443333333333444444443 333332 3456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873 495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK 572 (709)
Q Consensus 495 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 572 (709)
..+-.++ .+......-+.+....|.-+.-.++...+.+.+..++....-++++|.+.|...++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6655554 244455666778888999899999999888766667889999999999999999999999999999873
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.84 E-value=0.12 Score=45.74 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.....++..+...|+++.|....+.++..+|.+...|..++.+|...|+..+|.++++.+..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999999864
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.84 E-value=0.059 Score=52.75 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHH
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRSTP-VKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSN 548 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~~-~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 548 (709)
|..-+..+.+.|++++|...|+..- ..|+ ...+--+...+...|+++.|...|+++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444444556666655554331 1122 2334445556666677777777777776665543 334445566
Q ss_pred HhhhcCCchhHHHHHHHHHh
Q 039873 549 MYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 549 ~~~~~g~~~~a~~~~~~m~~ 568 (709)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777766654
No 214
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=4.3 Score=44.72 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873 170 KYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS 248 (709)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (709)
..++...|+.+.-.|++++|-...-.|...+..-|.-.+.-+...++......+ +.....+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 346777777777888888888888888777777777777777777665443322 2222223445566666666654
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.65 E-value=0.21 Score=48.91 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=52.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873 414 SHHGLGREALTLFQNMLAAEERPNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL 489 (709)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 489 (709)
.+.|++++|+..|+.+... -|+. ..+..+..++...|++++|...|..+.+.+...|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---------------- 215 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---------------- 215 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----------------
Confidence 4456666776666666663 3432 24445555556666666666666665544322221
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 490 LDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 490 ~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
....|-.+...+...|+.+.|...++++++..|+..
T Consensus 216 ---------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 ---------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 122333344445566777777777777777766543
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.64 E-value=0.15 Score=43.47 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873 434 ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG 482 (709)
Q Consensus 434 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 482 (709)
..|+..++.+++.+++..|++..|.++.+...+.++++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666777777776677777777777766666666656666665554
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.59 E-value=1.3 Score=39.87 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=42.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHc
Q 039873 342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAMICGYSHH 416 (709)
Q Consensus 342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~ 416 (709)
.+..+....|+..+|...+++...--+..|..+.-.+.++....++...|...++++-+ +...+--.+...|.-.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 34444444455555555554444433444444444455555555555555555554432 1122233334444455
Q ss_pred CChHHHHHHHHHHHH
Q 039873 417 GLGREALTLFQNMLA 431 (709)
Q Consensus 417 g~~~~A~~~~~~m~~ 431 (709)
|++.+|..-|+....
T Consensus 174 g~~a~Aesafe~a~~ 188 (251)
T COG4700 174 GKYADAESAFEVAIS 188 (251)
T ss_pred CCchhHHHHHHHHHH
Confidence 555555555555444
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.55 E-value=0.047 Score=41.54 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhH
Q 039873 482 GLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTY 543 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 543 (709)
.+|.+.+++++|.++++.+ ...|+ ...|......+...|+++.|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888887754 33454 66777777888899999999999999999998775543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.34 E-value=0.026 Score=43.68 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCC---CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHM----DPN---DVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
..+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345666777777777777777777777653 222 245677888899999999999998887653
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.15 Score=51.40 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
..++..|...+.+.+++..|++..++.++++|+|.-...--+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345667777888999999999999999999999999999999999999999999999999976
No 221
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=5.2 Score=40.80 Aligned_cols=150 Identities=11% Similarity=-0.048 Sum_probs=80.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH--HhccCChhHHHHHHHHHHHhCCCCChhH-------------
Q 039873 310 AACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS--AAGLSALRHGDLLHAHIEKSGFKEHLIV------------- 374 (709)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~------------- 374 (709)
.++.-.|++++|...--..++.. ++ ..+...+++ +-...+.+.+...+.+.++.+ |+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 34556667776666555544321 11 112222222 123345555555555555433 22111
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRY-------RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLS 446 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~ 446 (709)
+..=.+...+.|++..|.+.|.+... ++...|-.......+.|+.++|+.--++... +.|..+ .|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 11123445677888888888877652 3444565666667777888888877777655 333211 2222233
Q ss_pred HHhccccHHHHHHHHHHHHH
Q 039873 447 ACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~ 466 (709)
++...+.|++|.+.++..++
T Consensus 330 c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777777765
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.85 E-value=0.34 Score=41.35 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHH--------------HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH----h
Q 039873 438 HVTFVGVLSACGHLGLVQEGFYYLNHL--------------MKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR----S 499 (709)
Q Consensus 438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~ 499 (709)
+.++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++ .
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344445555555555555444444332 1123445666666777777777777777766643 2
Q ss_pred CCCCCCHHHHHHHHHH
Q 039873 500 TPVKWDVVAWHTLLNA 515 (709)
Q Consensus 500 ~~~~pd~~~~~~ll~~ 515 (709)
.+++-+...|..|+.=
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 2444446666666653
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.76 E-value=1.3 Score=44.02 Aligned_cols=192 Identities=11% Similarity=0.103 Sum_probs=115.1
Q ss_pred HHhHHHhHHHhcCCHHHHHHH-------HhhcCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHH
Q 039873 374 VGNALINMYAKGGNIEAANKV-------FSDMRYR--DIITWNAMICGYSHHGLGREALTLFQNMLA-AEERPN---HVT 440 (709)
Q Consensus 374 ~~~~li~~y~~~g~~~~A~~~-------f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd---~~t 440 (709)
++..+.++.++.|.+++++.. +.+..+. -..+|..+..++.+.-++.+++.+-+.-.. .|..|- -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 344455555566655554432 1111111 123555555666555555555555443322 233331 123
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHH-------HHhCCCCCC-HHH
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKF-------MRSTPVKWD-VVA 508 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~-------~~~~~~~pd-~~~ 508 (709)
..++-.|+...+.++++++.|+...+-..-..| ..+|..|...|++..++++|.-+ .+..+++ | ..-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHH
Confidence 344566777778899999999988663222222 35788999999999999887765 3344432 2 222
Q ss_pred HH-----HHHHHHHhcCCchHHHHHHHHHHhcC--CCCc----hhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 509 WH-----TLLNASRVHQNYGFGRRIAEYILHMD--PNDV----GTYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 509 ~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
|. -|.-+++..|.+..|.+..+++.++- ..|. ....+++++|-..|+.+.|..-++..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22 34458899999999999988876642 2233 34458899999999988887766654
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.50 E-value=3.1 Score=39.21 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=88.2
Q ss_pred hHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-
Q 039873 380 NMYAKGGNIEAANKVFSDMRY--RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGH- 450 (709)
Q Consensus 380 ~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~- 450 (709)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+. -|+ ..-+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 345567778888888877763 21 234555677788888888888888887763 233 1222222222221
Q ss_pred ------------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 039873 451 ------------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH--TLLNAS 516 (709)
Q Consensus 451 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~--~ll~~~ 516 (709)
.+...+|...|+.+ +.-|-.+....+|...+..+. +...-. .+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 11223344444444 333444444455555443321 111111 133457
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCc---hhHHHHHHHhhhcCCchhHH
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDV---GTYILLSNMYAKEKRWDGVS 560 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 560 (709)
.+.|.+.-|..-++.+++.-|+.. .....++.+|.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 788899999999999999888654 34567788888888877443
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.47 E-value=1.4 Score=46.06 Aligned_cols=154 Identities=14% Similarity=0.044 Sum_probs=89.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
+..+++.-+++-++..+ +.||..+-..+| |--....+.++.+++++..+. |- ..+..- ......|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hh
Confidence 34455666666666666 667765544443 223345678888888876552 10 000000 00001111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873 495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN--DVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK 572 (709)
Q Consensus 495 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 572 (709)
+.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|. +......|+..|...+++.++..++.+-.+-...
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222333455666778889999999999888876654 4456778888888999999998888887655555
Q ss_pred cCCceeEE
Q 039873 573 KEPGSSWT 580 (709)
Q Consensus 573 ~~~~~s~~ 580 (709)
+...++|+
T Consensus 328 kSAti~YT 335 (539)
T PF04184_consen 328 KSATICYT 335 (539)
T ss_pred chHHHHHH
Confidence 55555554
No 226
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.34 E-value=2.3 Score=37.23 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCcc
Q 039873 139 SIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFR 218 (709)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 218 (709)
..++..+...+.......+++.+++.+ ..+....|.++..|++.. .+.....++. ..+......++..+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344555555555666666666666555 245556666777776543 2333333331 123333444555555555555
Q ss_pred HHHHHHHHH
Q 039873 219 GGVEVLGKM 227 (709)
Q Consensus 219 ~A~~l~~~m 227 (709)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555544
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.32 E-value=0.09 Score=40.62 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAA--EER---PN-HVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
+++.+...|...|++++|++.|++.... ... |+ ..++..+...+...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555566665555554431 011 22 33566666667777777777777766543
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.56 Score=45.69 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 039873 288 SNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYE 331 (709)
Q Consensus 288 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (709)
.++..+|+++.. .|+.+-.-+...+.+.|++.+|...|+.|.+.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 345555555443 23444444555666666666666666666654
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.26 E-value=7.7 Score=40.12 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHhCCCCCC----HHHHHHHHHH--HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 496 FMRSTPVKWD----VVAWHTLLNA--SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 496 ~~~~~~~~pd----~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
+++..++.|- ...-|.|..| .-.+|++.++.-...-+.++.| ++.+|..++-.+....++++|..++..++
T Consensus 446 fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 446 FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3555565543 3344555554 4578999999998888999999 78999999999999999999999998764
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.21 E-value=5 Score=37.76 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=22.4
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHH
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDE 492 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~ 492 (709)
.-+.+.|.+..|..-++.+++++.-.+.. .....|+.+|.+.|..+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 34555566666666666665543332221 233445555555555553
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.05 E-value=0.49 Score=49.06 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=35.1
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDI----ITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.+...++.+..+|.+.|++++|...|++.. .||. .+|..+..+|...|+.++|++.+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556666666666666666665543 2332 2356666666666666666666666555
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.93 E-value=0.67 Score=40.96 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH----HhhCCCCChH
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM----KQIGIVPGLE 475 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~ 475 (709)
.++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 34444555555555555555555521 2244455555555555555555555555442 2345555543
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.89 E-value=8.2 Score=39.10 Aligned_cols=283 Identities=14% Similarity=0.087 Sum_probs=148.3
Q ss_pred HHHHHHHHHh--CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHh--cCCCcHHHHHHHHHHHHcCCCCchHH--HHHH
Q 039873 204 YNSVLNGLIE--NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSA--SLKDLKLGLQVHSQMLKSDIEPDVFI--NSAM 277 (709)
Q Consensus 204 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 277 (709)
|.+|-.|++- .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+.+.+++-|+-|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 3444444433 34444444443333211 3345555555555443 346777777777766542 22111 1112
Q ss_pred HHHHHhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCccc--hHHHHHHHhc--
Q 039873 278 ISMYGKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYE-AIRPNEFT--FAVMLNSAAG-- 349 (709)
Q Consensus 278 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t--~~~ll~~~~~-- 349 (709)
.----+.|.-+.|+..-+..-.. -...|.+.+...+..|+++.|+++++.-+.. -+.+|..- -..+|.+-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22223556667666666554432 2356777888888888888888888776553 23444321 2223322211
Q ss_pred -cCChhHHHHHHHHHHHhCCCCChhHH-hHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHH
Q 039873 350 -LSALRHGDLLHAHIEKSGFKEHLIVG-NALINMYAKGGNIEAANKVFSDMRY--RDIITWNAMICGYSHHGLGREALTL 425 (709)
Q Consensus 350 -~~~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 425 (709)
..+...++..-.+..+ +.||..-. -.-...|.+.|++.++-.+++.+-+ |....|. +..+.+.| +.++.-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSG--DTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCC--CcHHHH
Confidence 1234444444444444 23443222 2234567788888888888877753 3333332 22233334 444444
Q ss_pred HHHHHH-CCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHh
Q 039873 426 FQNMLA-AEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK-AGLLDEAEKFMRS 499 (709)
Q Consensus 426 ~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 499 (709)
+++... ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+.+
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 444432 1256653 456666667777777777766555542 446777777777766543 3777777776654
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.88 E-value=2 Score=37.52 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA-GLLDEAEKFMRSTPVKWDVVAWHTLLNASR 517 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~ 517 (709)
....++..|.+.+.++++..++..+ |. +...++.+... ++++.|.+++++.. +...|..++..+.
T Consensus 71 d~~~~~~~c~~~~l~~~~~~l~~k~----~~------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 71 DIEKVGKLCEKAKLYEEAVELYKKD----GN------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHcCcHHHHHHHHHhh----cC------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 3344555666666666666555543 11 22233333333 66666776666532 4556666665543
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.86 E-value=9.8 Score=44.24 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccccHHHHHHHH
Q 039873 386 GNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC----GHLGLVQEGFYYL 461 (709)
Q Consensus 386 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~----~~~g~~~~a~~~~ 461 (709)
|++++|+.-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+| .....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555443 223444444445666666666653 45555554444433 3445555555555
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 462 NHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAW--HTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 462 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
+..-+ ..--+.+|-.+|+|.+|+.+-.++....|...- ..|.+-+...++.-+|-++......- |
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~-- 1029 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P-- 1029 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H--
Confidence 44311 112345566667777777766665433343322 45666666666665555554443321 1
Q ss_pred chhHHHHHHHhhhcCCchhHHHHHHH
Q 039873 540 VGTYILLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 565 (709)
.-....|.+...|++|.++-..
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHHh
Confidence 1122334455555555555443
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.49 E-value=0.64 Score=38.96 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=68.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC----chhHHHHHHHhhhcCC
Q 039873 482 GLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND----VGTYILLSNMYAKEKR 555 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 555 (709)
-+++..|++++|++.|.+. .+-| +...||.-..+++-.|+.++|+.-+++++++--+. -..|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888887643 3333 47788888889999999999999888888865222 2357777888889999
Q ss_pred chhHHHHHHHHHhCCC
Q 039873 556 WDGVSKIRKLMKVRKV 571 (709)
Q Consensus 556 ~~~a~~~~~~m~~~~~ 571 (709)
-+.|+.-|....+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888876553
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.46 E-value=6.9 Score=36.84 Aligned_cols=195 Identities=17% Similarity=0.078 Sum_probs=113.2
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMR-----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
..........+...+.+..+...+.... ......+..+...+...+.+.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555556666666666666665543 22334555555566666666777777776665332221 11112222
Q ss_pred -HHhccccHHHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 039873 447 -ACGHLGLVQEGFYYLNHLMKQIGI--VPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD--VVAWHTLLNASRVHQ 520 (709)
Q Consensus 447 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd--~~~~~~ll~~~~~~g 520 (709)
.+...|.++.+...+..... ..- ......+......+...++.++|...+... ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776632 111 112333334444456677777777776543 22223 456666666777777
Q ss_pred CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 521 NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 521 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+.+.|...+.......|.....+..+...+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 778888888888777776445566666666666667777777776654
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.46 E-value=0.76 Score=43.96 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHhhcC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-----------
Q 039873 391 ANKVFSDMR--YRDIITWNAMICGYSHH-----GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG----------- 452 (709)
Q Consensus 391 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 452 (709)
..+.|..+. ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 68888999998888764 566667777899999999999999999998775432
Q ss_pred -----cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873 453 -----LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 453 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (709)
.-+-++.++++|.. +|+.||.++-..|++++++.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 22346788888854 799999999999999999988744
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.21 E-value=2 Score=45.61 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=97.7
Q ss_pred HHhCCChhHHHHHHHH-hhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 039873 109 YLHNGFLLETLKLFKN-MVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVE 187 (709)
Q Consensus 109 ~~~~g~~~~A~~~~~~-m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 187 (709)
..-+++++++.++... -. -..++ ..-...+++-+-+.|..+.|.++-. |+ ..-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~l-l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNL-LPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHT-GGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhh-cccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 3456677776665541 11 11122 3346667777777777777766532 22 22345566889999
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCC
Q 039873 188 MAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDI 267 (709)
Q Consensus 188 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 267 (709)
.|.++.++.. +...|..|.....++|+.+-|.+.|.+... |..++-.+...|+.+.-.++-+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999887766 566899999999999999999999998753 66666677778888777777777776662
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 039873 268 EPDVFINSAMISMYGKCGKFSNAKKVFEGL 297 (709)
Q Consensus 268 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 297 (709)
+|....++.-.|++++..+++.+-
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444555555667777777766543
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.20 E-value=7.3 Score=40.00 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCC---CHhh----HHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873 276 AMISMYGKCGKFSNAKKVFEGLETR---NVVL----WTAMVAACFQ---NEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345 (709)
Q Consensus 276 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 345 (709)
.|+-.|-...+++...++.+.+... ++.. --...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777653 1111 1122334445 6788888888888665555666666665554
Q ss_pred HH
Q 039873 346 SA 347 (709)
Q Consensus 346 ~~ 347 (709)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=3.3 Score=42.20 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE 553 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 553 (709)
++..|.-.|.+.+++.+|++..+.. ...| |.-..--=..+|...|+++.|+..|+++++++|+|-.+-.-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5666777888888998888876532 2333 4544444556888999999999999999999999988888888777776
Q ss_pred CCchhH-HHHHHHHHhC
Q 039873 554 KRWDGV-SKIRKLMKVR 569 (709)
Q Consensus 554 g~~~~a-~~~~~~m~~~ 569 (709)
.++.+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 666555 7888888754
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=18 Score=40.47 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=69.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHH----HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHh
Q 039873 71 TNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMT----WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCS 146 (709)
Q Consensus 71 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~ 146 (709)
...-++++.+...++.|..+-..-.. |...-..+.. -+.+.|++++|..-|-+-. .-+.| ..+++-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhc
Confidence 34456677777777777777654332 2222222222 2456788888888877654 12333 23444444
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 039873 147 RSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP 197 (709)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 197 (709)
.......-..+++.+.+.|+. +...-+.|+..|.+.++.+.-.+..+...
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 444455555566677777754 33445667788888888777776666554
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.97 E-value=11 Score=37.63 Aligned_cols=97 Identities=8% Similarity=0.033 Sum_probs=44.6
Q ss_pred hHHHHHHHhccCChhH---HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-C--ChhhHHHHHHHH
Q 039873 340 FAVMLNSAAGLSALRH---GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-R--DIITWNAMICGY 413 (709)
Q Consensus 340 ~~~ll~~~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~ 413 (709)
+..+..++...+..+. +..+.+.+.. ..+..+.++-.-+....+.++.+.+.+++.+|.. . ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3444555555444333 3334444422 2222344444445555556666777766666652 1 123344433333
Q ss_pred ---HHcCChHHHHHHHHHHHHCCCCCCH
Q 039873 414 ---SHHGLGREALTLFQNMLAAEERPNH 438 (709)
Q Consensus 414 ---~~~g~~~~A~~~~~~m~~~g~~pd~ 438 (709)
..+. ...|...+.++....+.|..
T Consensus 166 ~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 3322 34555555555544444443
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.92 E-value=0.2 Score=31.26 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777778888888888888888888888875
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=19 Score=40.35 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=19.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY 459 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 459 (709)
+.++.+++.++.+.+..-.. ++.-|..+|+-+++.+.++.-.+
T Consensus 715 ~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 715 FQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHH
Confidence 34444445554444443221 44455555555555554444333
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=92.84 E-value=5.5 Score=41.68 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 039873 419 GREALTLFQNMLA-AEERPNHV-TFVGVLSACG---------HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA 487 (709)
Q Consensus 419 ~~~A~~~~~~m~~-~g~~pd~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 487 (709)
.+.|+.+|.+... +.+.|+.. .|..+-..+. ......+|.+.-+..++. -.-|......+..+++-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4578888888872 23677643 3333222111 122344555555555431 123445555666666777
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHH--HHHHHhhhcCCchhHHHHH
Q 039873 488 GLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYI--LLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 488 g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 563 (709)
|+++.|...|++. .+.|| ..+|......+.-.|+.++|.+.+++.++++|.....-. ..+++|...+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 7788888888744 45676 566666666667788888888888888888886543332 3444566554 45666555
Q ss_pred H
Q 039873 564 K 564 (709)
Q Consensus 564 ~ 564 (709)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.69 E-value=0.66 Score=44.35 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=76.1
Q ss_pred HHHHHHHhcc--CCCHhhHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC----------
Q 039873 289 NAKKVFEGLE--TRNVVLWTAMVAACFQN-----EYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS---------- 351 (709)
Q Consensus 289 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~---------- 351 (709)
..++.|...+ ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456666666 57888888888877654 566767777888999999999999999998775532
Q ss_pred ------ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873 352 ------ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387 (709)
Q Consensus 352 ------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 387 (709)
.-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234567888888888999998888888888887765
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=0.9 Score=43.70 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---CchhHHH
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-------PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN---DVGTYIL 545 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 545 (709)
.|+.-++.| +.|++.+|..-|... ...||...| |..++...|+++.|...|..+.+-.|+ -+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444433 455566666655432 134555555 666777778888888888877775543 4567777
Q ss_pred HHHHhhhcCCchhHHHHHHHHHhC
Q 039873 546 LSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 546 l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|+.+..+.|+.++|..++++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888888888888888887654
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.42 E-value=0.33 Score=30.07 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777888888888888888877764
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.23 E-value=4.9 Score=42.79 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=88.0
Q ss_pred HHhCCCccHHHHHHH-HHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873 211 LIENECFRGGVEVLG-KMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN 289 (709)
Q Consensus 211 ~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 289 (709)
.+-.++++++.++.. .-.-..+ +..-...+++-+.+.|-.+.|.++-. |. ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHH
Confidence 344566666555554 1111111 12335556666666666666666532 22 223455667888888
Q ss_pred HHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 039873 290 AKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFK 369 (709)
Q Consensus 290 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 369 (709)
|.++-++.. +...|..|.....++|+.+-|.+.|.+... +..++-.+...|+.+.-.++.......|-
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 888876665 566888888888888888888888876542 55566666667777777777666666551
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhc
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDM 398 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 398 (709)
+|....++.-.|++++..+++.+.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334444455557776666666543
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=92.22 E-value=2.5 Score=44.09 Aligned_cols=117 Identities=7% Similarity=-0.043 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcC
Q 039873 453 LVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSK---------AGLLDEAEKFMR-STPVKW-DVVAWHTLLNASRVHQ 520 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~-~~~~~p-d~~~~~~ll~~~~~~g 520 (709)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++-+ ...+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456777788887654466776 3344444433321 123344455433 333333 5777777777778888
Q ss_pred CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 521 NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 521 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886543
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=5.6 Score=38.83 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=84.2
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCch
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHT---LLNASRVHQNYG 523 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~---ll~~~~~~g~~~ 523 (709)
.....|+..++...|....... .-+...--.|+..|...|+.++|..++..+|.+-...-|.. -|....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456788888888888876532 22345666788899999999999999999876544444443 223333444443
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
+...+ +.-...+|+|...-..|...|...|+.++|.+.+=.+..++
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33332 33445689999999999999999999999998877776543
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=5 Score=39.67 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=87.3
Q ss_pred hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH--HHHhccccHHH
Q 039873 384 KGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV--TFVGVL--SACGHLGLVQE 456 (709)
Q Consensus 384 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll--~a~~~~g~~~~ 456 (709)
-.|+.-+|...++++.+ .|..+|+--=.+|..+|+.+.-...+++.... ..||.. +|..=+ -++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35677777777777663 47777777777888888887777777777653 234432 222222 23456777777
Q ss_pred HHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCchHHHHH
Q 039873 457 GFYYLNHLMKQIGIV-PGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-------VVAWHTLLNASRVHQNYGFGRRI 528 (709)
Q Consensus 457 a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-------~~~~~~ll~~~~~~g~~~~a~~~ 528 (709)
|.+.-++..+ +. .|.-.-.++...+--.|+.+|+.+++.+-.-.=+ ---|..-+ .+...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 7766665432 22 2333445666677777888888888765431100 01111111 12233677778887
Q ss_pred HHHHH--hcCCCCc
Q 039873 529 AEYIL--HMDPNDV 540 (709)
Q Consensus 529 ~~~~~--~~~p~~~ 540 (709)
|+.-+ +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76532 3444554
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.15 E-value=21 Score=37.04 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=63.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNV---VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVL 142 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll 142 (709)
.|...|-.||.-|...|..++.++++++|..|-. .+|..-|++-...+++.....+|.+.. .... +...|..-|
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL-~k~l--~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL-KKSL--NLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH-hhhc--cHhHHHHHH
Confidence 5889999999999999999999999999988643 468888888888889999999999887 4444 345555555
Q ss_pred HHHhcCC
Q 039873 143 SSCSRSG 149 (709)
Q Consensus 143 ~~~~~~~ 149 (709)
.-..+..
T Consensus 117 ~YIRr~n 123 (660)
T COG5107 117 EYIRRVN 123 (660)
T ss_pred HHHHhhC
Confidence 5544444
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.88 E-value=12 Score=34.66 Aligned_cols=179 Identities=15% Similarity=0.053 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHhhcC--CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 039873 385 GGNIEAANKVFSDMR--YRD-IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYY 460 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 460 (709)
.|-..-|+--|.+.. .|+ ...||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++--.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444432 333 35677777778888888888888888877 3443 22332222344456788877766
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-
Q 039873 461 LNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND- 539 (709)
Q Consensus 461 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 539 (709)
|...-+...-.|-...|--++ -+.-++.+|..-+.+--.+.|..-|+.-|-.+.--. +. -+.+++++.+...++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgk-iS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGK-IS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhh-cc-HHHHHHHHHhhccchH
Confidence 655533323333333333222 233456677655433222456667776665443211 11 122333333322222
Q ss_pred ------chhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 540 ------VGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 540 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
..+|.-|+.-|...|..++|..+|+.....+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999887644
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.04 E-value=3.2 Score=40.06 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCI 480 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 480 (709)
|+.-+. +.+.|++.+|...|...++.. |+ ...+-.|..++...|++++|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444433 334566777777777777642 22 1234456677777777777777777777766655543 455555
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 039873 481 VGLLSKAGLLDEAEKFMRS 499 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~ 499 (709)
.....+.|+.++|...+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 5566666666666655544
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.03 E-value=14 Score=33.21 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHHhcc
Q 039873 221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCG--KFSNAKKVFEGLE 298 (709)
Q Consensus 221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 298 (709)
++.++.+.+.++.|+...+..+++.+.+.|.+..-. +++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 455666777889999999999999999888766544 3445555555443333332222211 1233444444443
Q ss_pred CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873 299 TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS 366 (709)
Q Consensus 299 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 366 (709)
..+..++..+...|++-+|+++.++... .+......++.+..+.++...-..++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466678889999999999998877532 23444566788877777777666666666654
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=89.90 E-value=11 Score=33.57 Aligned_cols=85 Identities=11% Similarity=-0.047 Sum_probs=41.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL 490 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 490 (709)
-+-+.|++++|..+|+-+... .|. ..-+..|...|-..+.+++|...|.....-..-.|. .+-.+...|...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--ccchHHHHHHHhCCH
Confidence 344556666666666665552 232 222333444444456666666666554331111222 222344555666666
Q ss_pred HHHHHHHHhC
Q 039873 491 DEAEKFMRST 500 (709)
Q Consensus 491 ~~A~~~~~~~ 500 (709)
++|++.|+..
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.39 E-value=21 Score=38.60 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=70.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCch
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYT-CIVGLLSKAGLLDEAEKFMRSTPV-K-----WDVVAWHTLLNASRVHQNYG 523 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----pd~~~~~~ll~~~~~~g~~~ 523 (709)
....+.+.+++..+.+. -|+...|. --...+...|++++|.+.|++.-. + -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566777777776543 34433332 223455667777888777774321 1 11223333445566778899
Q ss_pred HHHHHHHHHHhcCCCCchhHH-HHHHHhhhcCCc-------hhHHHHHHHHHh
Q 039873 524 FGRRIAEYILHMDPNDVGTYI-LLSNMYAKEKRW-------DGVSKIRKLMKV 568 (709)
Q Consensus 524 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 568 (709)
+|.+.+..+.+...-....|. ..+-.|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998887654444444 444455677888 788888887764
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.94 E-value=9.1 Score=33.21 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 485 SKAGLLDEAEKFMRST----PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~----~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
.+.|++++|.+.|+.+ |..| ...+---|+.++-+.++++.|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3556666666665543 2211 123334466677777777777777777777777544
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.94 E-value=15 Score=38.67 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=62.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHh
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV--KWD--VVAWHTLLNASRV 518 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~pd--~~~~~~ll~~~~~ 518 (709)
.+...+-+.|..++|.+.+..++++........+...|+..|...+.+.++..++.+..- -|. ...|+..+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 345556677888888888888877654333445666788888888888888888776531 133 4555554444443
Q ss_pred cCC---------------chHHHHHHHHHHhcCCCC
Q 039873 519 HQN---------------YGFGRRIAEYILHMDPND 539 (709)
Q Consensus 519 ~g~---------------~~~a~~~~~~~~~~~p~~ 539 (709)
-++ ...|.++..++.+.+|.-
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 332 123557777888877754
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.91 E-value=12 Score=31.81 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhC
Q 039873 306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG 367 (709)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 367 (709)
+.-+..+..+|+-+.-.++++++.+. -.++......+..||.+.|+..++.+++..+-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33445555566666655565555432 24444555555566666666666666665555555
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.88 E-value=23 Score=34.07 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=86.0
Q ss_pred HHhcCChHHHHHHHHhccCCC------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC---
Q 039873 281 YGKCGKFSNAKKVFEGLETRN------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS--- 351 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~--- 351 (709)
-.+.|++++|.+.|+.+..+. ..+--.++-++-+.+++++|+..+++..+.-..-...-|..-|.+.+..-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 346788999999998887532 23344566778889999999999988776433333344555555544221
Q ss_pred ----ChhHHHHHHHHH---HHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhh-H-HHHHHHHHHcCChHHH
Q 039873 352 ----ALRHGDLLHAHI---EKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIIT-W-NAMICGYSHHGLGREA 422 (709)
Q Consensus 352 ----~~~~a~~i~~~~---~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-~-~~li~~~~~~g~~~~A 422 (709)
+...+++-+..+ ++. ++.+.. ..+|......+. |... + -++..-|.+.|.+..|
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r-yPnS~Y--------------a~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR-YPNSRY--------------APDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH-CCCCcc--------------hhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHH
Confidence 112222222222 111 111111 111111111100 1011 1 1234567778888888
Q ss_pred HHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHH
Q 039873 423 LTLFQNMLAAEERPN---HVTFVGVLSACGHLGLVQEGFYYLNH 463 (709)
Q Consensus 423 ~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~ 463 (709)
..-+++|++. .+-. ...+-.+..++-..|..++|...-.-
T Consensus 187 ~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 187 INRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 8888888775 2211 22445555666667776666655443
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=22 Score=33.81 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCCCchhHH
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRSTPV-------KWDV-VAWHTLLNASRVHQNYGFGRRIAEYILHM----DPNDVGTYI 544 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 544 (709)
+......|.+..+++||-..|.+-.. -|+. -.+-+.|-.+....++..|+..++.--++ +|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33344455666666666555443210 0111 11222223334445667777777664443 355555666
Q ss_pred HHHHHhhhcCCchhHHHHH
Q 039873 545 LLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 545 ~l~~~~~~~g~~~~a~~~~ 563 (709)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 345556555544
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.46 E-value=6.5 Score=42.40 Aligned_cols=54 Identities=17% Similarity=-0.028 Sum_probs=29.8
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcc---cHHHHH-HHHHhCCCc-------cHHHHHHHHHHh
Q 039873 176 LVELYTKCLDVEMAKRLLDLLPGYDVF---EYNSVL-NGLIENECF-------RGGVEVLGKMVS 229 (709)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li-~~~~~~g~~-------~~A~~l~~~m~~ 229 (709)
+.-.+.-.+++++|...|..+.+.+.. .|.-+. .++...|+. ++|.++|.+...
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334455566777777777776653322 122222 333445666 777777777643
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.37 E-value=19 Score=32.43 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
.|..+|..+.+.|++ ..+.++.+.++-||.......+-.... ....+.++=-.|.++.+. .+..+++.+
T Consensus 31 L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~iievL 99 (167)
T PF07035_consen 31 LYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEIIEVL 99 (167)
T ss_pred HHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHHHHHH
Confidence 333344444444433 234445555667776665555533332 223344443344433221 456677888
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 039873 485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAE 530 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~ 530 (709)
...|++-+|.++.++.+. -+...-.-++.+-...+|...=-.+++
T Consensus 100 L~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888877531 122222344555555544443333333
No 267
>PRK09687 putative lyase; Provisional
Probab=87.87 E-value=31 Score=34.34 Aligned_cols=75 Identities=8% Similarity=0.030 Sum_probs=40.8
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACG 449 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 449 (709)
++..+-...+.++++.|+..-.-.+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 445555555566666666433333333333333 233566777777764 677777777663 446655555555554
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=7.2 Score=38.60 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=117.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH----HHHHhcCCH
Q 039873 415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV----GLLSKAGLL 490 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~ 490 (709)
-+|+..+|-..++++.+. .+.|-..+...=.+|...|+.+.-+..++++.. ...||...|..+= -.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888898999998875 567888888888999999999998888888754 3467766655443 344689999
Q ss_pred HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC----CchhHHHHHHHhhhcCCchhHHHHHH
Q 039873 491 DEAEKFMRS-TPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN----DVGTYILLSNMYAKEKRWDGVSKIRK 564 (709)
Q Consensus 491 ~~A~~~~~~-~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 564 (709)
++|++.-++ ..+.| |...-.+........|+..++.+...+-...-.+ -.-.|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999998764 34443 4555567777788899999999887765443221 12345566667778899999999999
Q ss_pred HHHhCCCccCCce
Q 039873 565 LMKVRKVKKEPGS 577 (709)
Q Consensus 565 ~m~~~~~~~~~~~ 577 (709)
.=.-+.+.++.++
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 8765556665553
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.53 E-value=18 Score=31.39 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=59.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 039873 411 CGYSHHGLGREALTLFQNMLAAEERP---NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA 487 (709)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 487 (709)
....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...++..++.+.-.|++ .|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3345567777777777777654 121 23345556667777777777777777776655555543 233333333322
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 488 GLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 488 g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
...+.++.-|- ..+.| .+....|...|+.+++.-|++
T Consensus 96 ~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCC
Confidence 22221111111 11111 223456777788888888865
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.41 E-value=1.4 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNML 430 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (709)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777744
No 271
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.40 E-value=25 Score=34.30 Aligned_cols=56 Identities=13% Similarity=-0.118 Sum_probs=51.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 513 LNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 513 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...|...|.+.+|.++.++++.++|-+...+-.|+..|+..|+--.+.+-++++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34788999999999999999999999999999999999999998888888888764
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.09 E-value=4.1 Score=39.90 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=59.2
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLA-----AEERPNHVTFVG 443 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ 443 (709)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34567788888999999999988888764 3667899999999999999999999988765 467776665555
Q ss_pred HHHH
Q 039873 444 VLSA 447 (709)
Q Consensus 444 ll~a 447 (709)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.04 E-value=1.4 Score=27.28 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPN 437 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 437 (709)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777788888888888888888777 4554
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.88 E-value=2.1 Score=28.57 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV 439 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 439 (709)
+|..+...|.+.|++++|.++|++..+ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777777777777777 355543
No 275
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.86 E-value=30 Score=33.25 Aligned_cols=228 Identities=16% Similarity=0.241 Sum_probs=125.7
Q ss_pred CChHHHHHHHHhccC----C---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh---CCCCC--CccchHHHHHHHhccCC
Q 039873 285 GKFSNAKKVFEGLET----R---NVVLWTAMVAACFQNEYFEEALNLFCGMEY---EAIRP--NEFTFAVMLNSAAGLSA 352 (709)
Q Consensus 285 g~~~~A~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p--d~~t~~~ll~~~~~~~~ 352 (709)
...++|..-|.+..+ + .--+.-.||..+.+.|++++.++.|++|.. +.+.- ...+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665542 1 122334567777777777777777777742 22222 33456666665555555
Q ss_pred hhHHHHHHHHHHHh-----CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--------CC-------hhhHHHHHHH
Q 039873 353 LRHGDLLHAHIEKS-----GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--------RD-------IITWNAMICG 412 (709)
Q Consensus 353 ~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~-------~~~~~~li~~ 412 (709)
.+.-..+++.-.+. +-..--.+-+-|...|...|++.+-.+++.++.. .| ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55444444432211 1111222334566677777777777777776641 11 2356666777
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHhhCCC--CCh---HHHHHHH
Q 039873 413 YSHHGLGREALTLFQNMLAAE-ERPNHVTFVGVLSACG-----HLGLVQEGFYYLNHLMKQIGIV--PGL---EHYTCIV 481 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~~---~~~~~li 481 (709)
|....+-.+-..+|++...-. --|-+ ....++.-|. +.|.+++|-.-|-++.+.+.-. |.. --|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 887777777777888766422 23333 3345666663 4677777765444444433222 221 2355566
Q ss_pred HHHHhcCC----HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 039873 482 GLLSKAGL----LDEAEKFMRSTPVK--WDVVAWHTLLNASRVH 519 (709)
Q Consensus 482 ~~~~~~g~----~~~A~~~~~~~~~~--pd~~~~~~ll~~~~~~ 519 (709)
+++.++|- -.|| -|.+ |.......|+.+|..+
T Consensus 280 NMLmkS~iNPFDsQEA------KPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEA------KPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCCCCCccccc------CCCCCCHHHHHHHHHHHHHhcc
Confidence 77777662 1222 1333 4566778888888755
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.76 E-value=1.1 Score=27.76 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777777663
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.60 E-value=1.1 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHH
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEY 531 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~ 531 (709)
|..|...|...|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 278
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.43 E-value=9.4 Score=30.54 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAE 433 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 433 (709)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4444444444443311 22222223445667899999999999999999999988765 46677777777788888776
Q ss_pred CCCCHHHHHH
Q 039873 434 ERPNHVTFVG 443 (709)
Q Consensus 434 ~~pd~~t~~~ 443 (709)
.|...+|..
T Consensus 99 -~p~lq~Faa 107 (115)
T TIGR02508 99 -DPRLQTFVA 107 (115)
T ss_pred -CHHHHHHHH
Confidence 666556543
No 279
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.33 E-value=2 Score=36.16 Aligned_cols=54 Identities=7% Similarity=-0.088 Sum_probs=50.8
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 515 ASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 515 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+....|+++.|++.|.+.+.+-|.+++.|+.-..+|--+|+.++|..-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999988876
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.28 E-value=2.4 Score=38.59 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc
Q 039873 484 LSKAGLLDEAEKFMRST----PV---KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW 556 (709)
Q Consensus 484 ~~~~g~~~~A~~~~~~~----~~---~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 556 (709)
+.+.|++++|.+-+... |- +-..+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666554321 11 112445555556777888999999999999999997777777778899999999
Q ss_pred hhHHHHHHHHHhCC
Q 039873 557 DGVSKIRKLMKVRK 570 (709)
Q Consensus 557 ~~a~~~~~~m~~~~ 570 (709)
++|.+-++.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887753
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=36 Score=33.46 Aligned_cols=139 Identities=17% Similarity=0.030 Sum_probs=57.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 491 (709)
....|++.+|..+|....... .-+...-..+..++...|+++.|..++..+-.+ ..-+. .....-+..+.+.....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcCC
Confidence 344555555555555555421 112233334445555555555555555443111 00000 01112233333333333
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCchhHHHHHHHhhhcC
Q 039873 492 EAEKFMRSTPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMD--PNDVGTYILLSNMYAKEK 554 (709)
Q Consensus 492 ~A~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 554 (709)
+...+-+...-.| |...--.+...+...|+.+.|.+.+=.+++.+ -.|...--.|+.++.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333332233 23333344445555555555555444444432 223344444555444444
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.82 E-value=30 Score=32.22 Aligned_cols=92 Identities=14% Similarity=0.002 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873 271 VFINSAMISMYGKCGKFSNAKKVFEGLET-----RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345 (709)
Q Consensus 271 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 345 (709)
..........+...+.+..+...+..... .....+......+...+.+.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45556666666777777777666665432 2334555555666666667777777776665332221 11111111
Q ss_pred -HHhccCChhHHHHHHHHH
Q 039873 346 -SAAGLSALRHGDLLHAHI 363 (709)
Q Consensus 346 -~~~~~~~~~~a~~i~~~~ 363 (709)
.+...++++.+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 138 GALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 344555555555555554
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.82 E-value=3 Score=36.90 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=36.6
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 570 (709)
..+++.+.++.++.-+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566777777777777777766666666677777777777777777765543
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.52 E-value=59 Score=35.27 Aligned_cols=182 Identities=13% Similarity=0.050 Sum_probs=121.8
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMRYRD---IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA 447 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 447 (709)
+..+|+..++.-.+.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++....+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777777888899999999998876442 234555555555558888887777766654333222222222223
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAE---KFMRST-PVKWDVVAWHTLLN-----ASR 517 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~pd~~~~~~ll~-----~~~ 517 (709)
+-..|+.+.|..+++.+..++ |+. .+-.--+.+..+.|..+.+. +++... +.+-+....+.+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 456789999999999987753 553 33344567778899999888 555432 22223333333332 244
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
..++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56789999999999999999999999999998877663
No 285
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.51 E-value=50 Score=34.44 Aligned_cols=397 Identities=10% Similarity=-0.001 Sum_probs=199.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHH
Q 039873 167 VFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDV---FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAF 243 (709)
Q Consensus 167 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 243 (709)
+.|...|-.||.-|...|..++-++++++|..|-+ ..|..-|++=....++.....+|.+-+......|. |..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL--W~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL--WMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH--HHHHH
Confidence 44667788888888888888888888888877643 35777777777777777777788777665444333 22223
Q ss_pred HHHhcCCCcH------HHHHHHHHHHH-cCCCC-chHHHHHHHHHHH---------hcCChHHHHHHHHhccCC---C--
Q 039873 244 GLSASLKDLK------LGLQVHSQMLK-SDIEP-DVFINSAMISMYG---------KCGKFSNAKKVFEGLETR---N-- 301 (709)
Q Consensus 244 ~~~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~~~~m~~~---~-- 301 (709)
.--.+.+..- ...+.++..+. .+++| ....|+..+...- ...+++..++.+.++..- |
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 2222222111 11233444333 34444 2334554444322 122455566666666531 1
Q ss_pred -----HhhHHHHHHH-----HHH--cCCHhHHHHHHHHHHh--CCCCC----CccchHHHHH-----------HHhcc--
Q 039873 302 -----VVLWTAMVAA-----CFQ--NEYFEEALNLFCGMEY--EAIRP----NEFTFAVMLN-----------SAAGL-- 350 (709)
Q Consensus 302 -----~~~~~~li~~-----~~~--~g~~~~A~~~~~~m~~--~g~~p----d~~t~~~ll~-----------~~~~~-- 350 (709)
-..|..=+.. ++. .--+..|...+++... .|+.. +..|++-+-+ -=...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1112111111 111 1123456666666643 34322 2222222111 00000
Q ss_pred ---CC--hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChh------------------h
Q 039873 351 ---SA--LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDII------------------T 405 (709)
Q Consensus 351 ---~~--~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~------------------~ 405 (709)
++ ....--+|.+++.. +.-...+|--.-..+...++-+.|+.....-.. |... +
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~ 355 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGC 355 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhh
Confidence 00 11111222222221 122233333333334455666777766654321 2210 1
Q ss_pred HHHHHHHHHH---cCChHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhC-CCCChH
Q 039873 406 WNAMICGYSH---HGLGREALT------LFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG-IVPGLE 475 (709)
Q Consensus 406 ~~~li~~~~~---~g~~~~A~~------~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~ 475 (709)
|..++..+.+ .+..+.+-. ...+..-....-=...|...+++-.+..-++.|+.+|.+..+ .| +.+++.
T Consensus 356 fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vy 434 (660)
T COG5107 356 FDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVY 434 (660)
T ss_pred HHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCccee
Confidence 1111111111 011111100 011111100111123455666777777778888999988866 46 667888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-hCCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcCC--CCchhHHHHHHHhh
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMR-STPVKWDVVA-WHTLLNASRVHQNYGFGRRIAEYILHMDP--NDVGTYILLSNMYA 551 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~ 551 (709)
.+++++.-++ .|+..-|..+|+ .|..-||... -+-.+.-+..-++-+.|..+|+...+.-. .-...|..+++--+
T Consensus 435 i~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs 513 (660)
T COG5107 435 IYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES 513 (660)
T ss_pred eeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Confidence 8899888664 577778888876 3433456433 34556666677888888888886554211 12356777777777
Q ss_pred hcCCchhHHHHHHHHHh
Q 039873 552 KEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 552 ~~g~~~~a~~~~~~m~~ 568 (709)
.-|+...|..+-++|.+
T Consensus 514 ~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 514 MVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhcchHHHHhHHHHHHH
Confidence 77887777766666654
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.26 E-value=19 Score=36.09 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcccc--HHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873 420 REALTLFQNMLAAEERPN-HV-TFVGVLSACGHLGL--VQEGFYYLNHLMKQIGIVPGLEHYTCIVGL 483 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~~pd-~~-t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 483 (709)
+.+..+|+.+...|+..+ .. ....+|.-+..... +..+.++++.+.+ .|+++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 456677888888787664 32 33334433322222 4466777777655 5888887777765543
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.10 E-value=72 Score=35.94 Aligned_cols=160 Identities=13% Similarity=0.021 Sum_probs=71.0
Q ss_pred hHHHHHHHHH-hCCChhHHHHHHHHhhhCCCCCCChh----hHH-HHHHHHhcCCCchHHHHHHHHHHHhC----CCCch
Q 039873 101 SYSSLMTWYL-HNGFLLETLKLFKNMVSGDNLEPNEY----IFS-IVLSSCSRSGRGAEGRQCHGYVFKSG----LVFCK 170 (709)
Q Consensus 101 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~~g~~p~~~----t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~ 170 (709)
++-.+...+. ...++++|...+++.. ...-+++.. ... .++..+.+.+ ...|....+..++.- ..+-.
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll~~i~~~~~-~~~a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLLARIYFKTN-PKAALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhccCchhHH
Confidence 3444444443 4566666666666543 111112111 111 2223333333 333666555554421 12223
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHhhCCC-------CCcccHHHHHHHHH--hCCCccHHHHHHHHHHhCCC--------
Q 039873 171 YVRNAL-VELYTKCLDVEMAKRLLDLLPG-------YDVFEYNSVLNGLI--ENECFRGGVEVLGKMVSGSV-------- 232 (709)
Q Consensus 171 ~~~~~l-i~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~-------- 232 (709)
..+.-+ +..+...++...|.+.++.+.. +-+...-.++.+.+ +.+.++++++.++++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 333333 3333333666666666655432 11222333333333 34556677777766633211
Q ss_pred -CCChhhHHHHHHHHh--cCCCcHHHHHHHHHH
Q 039873 233 -RWDSVTYVNAFGLSA--SLKDLKLGLQVHSQM 262 (709)
Q Consensus 233 -~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 262 (709)
.|-..+|..++..++ ..|+++.+.+.+.++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223445666666554 456655665555444
No 288
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.03 E-value=46 Score=33.63 Aligned_cols=162 Identities=13% Similarity=0.055 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCCCc---cchHHHHHHHhccCChhHHHHHHHHHHHhCC-----CCChhH
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEY-EAIRPNE---FTFAVMLNSAAGLSALRHGDLLHAHIEKSGF-----KEHLIV 374 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~ 374 (709)
+|-.+..++-+..++.+++.+-+.-.. .|..|.. ....++-.+....+.++++.+.|+.+.+..- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554433322 2333311 1223345556666677777777776655321 123456
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcC-------CCChh------hHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMR-------YRDII------TWNAMICGYSHHGLGREALTLFQNMLA----AEERPN 437 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd 437 (709)
+-+|...|.+..++++|.-...+.. -.|+. +.--|..++...|....|.+.-++..+ .|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7778888888888777765544332 12221 122244566667777777766666433 232221
Q ss_pred -HHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873 438 -HVTFVGVLSACGHLGLVQEGFYYLNHLM 465 (709)
Q Consensus 438 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 465 (709)
......+.+.|...|+.+.|+.-|+..+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1123344455666677777666665543
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.68 E-value=17 Score=36.48 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhCCCCCCc--cchHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCChhHHhH
Q 039873 319 EEALNLFCGMEYEAIRPNE--FTFAVMLNSAAGLSA--LRHGDLLHAHIEKSGFKEHLIVGNA 377 (709)
Q Consensus 319 ~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~--~~~a~~i~~~~~~~g~~~~~~~~~~ 377 (709)
+.+...|+.+...|+..+. ...+.+|..+..... ...+..+++.+.+.|++.....|..
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3444555555555544422 222223322222221 2345556666666666655555443
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.67 E-value=51 Score=33.88 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 401 RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP---NHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577778888888888888888888777643111 112222223334456777777777766655
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.64 E-value=51 Score=33.87 Aligned_cols=65 Identities=6% Similarity=0.115 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC----CCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP----NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...+|..+...++++|+++.|...+.++...++ ..+.....-+......|+..+|...++.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988652 24566777788999999999999999888763
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.17 E-value=27 Score=31.98 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNHV--TFVGVLSACGHLGLVQEGFYYLNHL 464 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~ 464 (709)
+..+..-|.+.|+.++|++.|.++......|... .+..++..+...+++..+.....++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444455555555555544433333322 2334444444445555444444443
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=9.7 Score=37.41 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=72.7
Q ss_pred hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-C------C--hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873 366 SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-R------D--IITWNAMICGYSHHGLGREALTLFQNMLAAEERP 436 (709)
Q Consensus 366 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 436 (709)
.|.+....+...++..-....+++++...+-++.. | + .++|-.++ ..=++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 35555666666677776767788888888777662 2 2 23333332 2346779999999989999999
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873 437 NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQ 467 (709)
Q Consensus 437 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 467 (709)
|..|+..+++.+.+.+++.+|.++.-.|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777654
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.45 E-value=3.9 Score=35.57 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=44.4
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
..++.++++.++..+.-+.|+.+..-..-+.++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 377888888888888888888888777888888888999999988888876553
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.97 E-value=5.2 Score=39.22 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++..++..+...|+.+.+...++.+++.+|-+...|..++.+|...|+...|++.++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666777778888888888888888888888888888888888888888888888875
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.25 E-value=1.1e+02 Score=36.09 Aligned_cols=110 Identities=16% Similarity=0.100 Sum_probs=52.3
Q ss_pred hHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 039873 380 NMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY 459 (709)
Q Consensus 380 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 459 (709)
+.--+.|.+.+|+.++..=.++-...|.+...-+.+.+.+++|.-+|+..-+ ..-.+.++-.+|+|.++..
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence 3334455555555554332222223334444444445556666555544311 1123455666666666666
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873 460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 500 (709)
+..++.. +-.--..+...|+.-+...++.-||-++....
T Consensus 987 ~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 987 LAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 6554421 11111122345666666666666666665544
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.24 E-value=25 Score=31.55 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccC
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLET 299 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~ 299 (709)
-.+|.-+-.|.|++.+|.+.|.++..
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33444444455555555555555543
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.14 E-value=36 Score=30.25 Aligned_cols=89 Identities=19% Similarity=0.037 Sum_probs=55.2
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCch
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVPGLE-HYTCIVGLLSKAGLLDEAEKFMRSTPV-KWDVVAWHTLLNASRVHQNYG 523 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-~pd~~~~~~ll~~~~~~g~~~ 523 (709)
+.-...++.+++..++..+. -+.|... +-..-...+.+.|++.+|+.+|+++.- .|....-.+|+.-|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34456677888888877763 3455432 222334456788888888888887642 244455566777776665555
Q ss_pred HHHHHHHHHHhcCC
Q 039873 524 FGRRIAEYILHMDP 537 (709)
Q Consensus 524 ~a~~~~~~~~~~~p 537 (709)
.=....+++++.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 55556666666665
No 299
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.04 E-value=95 Score=34.97 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=38.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhC-CCCChhHHhHHHhHHHh---
Q 039873 309 VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG-FKEHLIVGNALINMYAK--- 384 (709)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~--- 384 (709)
...+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455678899999988876 2334556666666665543322221111 2222111 01111345667777765
Q ss_pred cCCHHHHHHHHhhcC
Q 039873 385 GGNIEAANKVFSDMR 399 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~ 399 (709)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 456777777766554
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.74 E-value=9.7 Score=37.42 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCC-------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQ-------RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIF 138 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~ 138 (709)
....+-..++..-....+++++...+-+..+ |+...+ +.++.+. .-++++++.++..=. ..|+.||.+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~~ 138 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFTF 138 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcc-hhccccchhhH
Confidence 4455556666666667788888887766653 222221 2233332 336778888888777 78999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhC
Q 039873 139 SIVLSSCSRSGRGAEGRQCHGYVFKSG 165 (709)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (709)
..++..+.+.+++..|.++...|+...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999888888877776654
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.45 E-value=3.4 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666777777777777777777766
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.05 E-value=2.8 Score=41.42 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNY 522 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~ 522 (709)
+-|.+.|.+++|+..|...+ .+.| +...+..-..+|.+..++..|+.-.... .+.. -.-.|.--..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998764 4455 6777888888999999998887654432 1110 022333334444456788
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873 523 GFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK 564 (709)
Q Consensus 523 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 564 (709)
.+|.+-++.+++++|.+. -|-..|+......|+.-+.+
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence 999999999999999853 34455555555555544443
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.72 E-value=1e+02 Score=34.63 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCC
Q 039873 98 NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSG 149 (709)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~ 149 (709)
+...| ++|--+.|.|++++|+++..... .........|...++.+....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhCC
Confidence 34456 46677889999999999996664 456667778889999987653
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.38 E-value=9.8 Score=37.75 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=26.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFY 459 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 459 (709)
-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 35556666666666665544 445 56666665666666555554443
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.93 E-value=1.3 Score=38.93 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=59.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHH
Q 039873 141 VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGG 220 (709)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 220 (709)
++..+.+.+.+.....+++.+++.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666777777888888888777667788889999999998887888888774332 3345566666677777777
Q ss_pred HHHHHHH
Q 039873 221 VEVLGKM 227 (709)
Q Consensus 221 ~~l~~~m 227 (709)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7766665
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.28 E-value=2e+02 Score=37.04 Aligned_cols=278 Identities=11% Similarity=0.035 Sum_probs=145.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh-ccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccC
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEG-LETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLS 351 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~ 351 (709)
+-.+...|+.-+++|....+... ...+++ ..-|.-....|++..|...|+++.+.+ |+ ..+++.++......+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhccc
Confidence 34444477777777666666552 333332 233455566788888888888887653 44 566777776666666
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHh-HHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHH-H-HHHHHcC--ChHHHHHHH
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGN-ALINMYAKGGNIEAANKVFSDMRYRDIITWNAM-I-CGYSHHG--LGREALTLF 426 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~ 426 (709)
.++...-..+...... .+...-++ .=+.+--+.++++....... +.+..+|.+. + ..+.+.. +.-.-.++.
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6665544333332221 22222222 22333345666666555554 5566666665 2 2222211 111111233
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH----------HHHhhCCCCChH------HHHHHHHHHHhcCCH
Q 039873 427 QNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH----------LMKQIGIVPGLE------HYTCIVGLLSKAGLL 490 (709)
Q Consensus 427 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~----------~~~~~~~~p~~~------~~~~li~~~~~~g~~ 490 (709)
+.+++.-+. =+.+|+..|.+..+.++.-. .....++.++.. .|..-...-....+.
T Consensus 1574 ~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 333332111 12233333332222222111 111123333321 122222111111112
Q ss_pred HHHHHHHH----hCCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873 491 DEAEKFMR----STPVKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 491 ~~A~~~~~----~~~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
.+-.--++ .....|+ ..+|-.....++..|.++.|....-++.+..+ +..+.-.+......|+...|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 22111111 1111222 67899999999999999999999888888775 3688999999999999999999
Q ss_pred HHHHHHhCC
Q 039873 562 IRKLMKVRK 570 (709)
Q Consensus 562 ~~~~m~~~~ 570 (709)
+++...+..
T Consensus 1724 ~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1724 VLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhh
Confidence 999988653
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.08 E-value=14 Score=33.76 Aligned_cols=59 Identities=3% Similarity=-0.046 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCCcHHHHHHHHHH
Q 039873 204 YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSV--TYVNAFGLSASLKDLKLGLQVHSQM 262 (709)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~ 262 (709)
+..+..-|.+.|+.++|++.|.++++....+... .+..+++.+...+++..+......+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455555666666666666666665543333322 3445555555556665555554444
No 308
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.93 E-value=58 Score=32.08 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCcccHHHHHHHHHhCCCccHH
Q 039873 167 VFCKYVRNALVELYTKCLDVEMAKRLLDLLP-----GYDVFEYNSVLNGLIENECFRGG 220 (709)
Q Consensus 167 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A 220 (709)
.++..+-...|..+++.+++..-.++++... ..|...|..+|......|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 4445555555566666666666555555432 23566666666666666665433
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.55 E-value=2.9 Score=27.13 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=23.3
Q ss_pred hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 541 GTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.++..|+..|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988875
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.18 E-value=24 Score=37.99 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=21.3
Q ss_pred hcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 039873 283 KCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNL 324 (709)
Q Consensus 283 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 324 (709)
-.|+++.|..++..++++ .-+.++.-+-++|..++|+++
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc
Confidence 346666666666655532 233444555556666666554
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.85 E-value=17 Score=29.32 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873 421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG 482 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 482 (709)
+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.+..+.|.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 445556666667789999999999999999999999999999987655543 336776664
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.57 E-value=3.3 Score=36.33 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=63.1
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 039873 36 LLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFL 115 (709)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 115 (709)
+++.+.+.+.+......+..+.+.+.. .+....+.++..|++.++.+...+.++.... .-...++..+.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~---~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE---NNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC----SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc---cCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 456666777788888888888877766 6899999999999999888888888874333 4445667777777888
Q ss_pred hHHHHHHHHhh
Q 039873 116 LETLKLFKNMV 126 (709)
Q Consensus 116 ~~A~~~~~~m~ 126 (709)
++|.-+|.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 88888777664
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.95 E-value=22 Score=28.43 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873 421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG 482 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 482 (709)
++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+....+.|. +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 55566667777778999999999999999999999999999987544333 4446666553
No 314
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.86 E-value=54 Score=36.42 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCC------CCC-ccchHHHHHHHhccCChhHHHHHHHHHHHh-C-CCCChhHHh
Q 039873 306 TAMVAACFQNEYFEEALNLFCGMEYEAI------RPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKS-G-FKEHLIVGN 376 (709)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~------~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~ 376 (709)
..++-.|-...+++..+++.+.+++--- .++ .+.|...++---+-|+-+.|..+.--+++. | +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap------ 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP------ 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC------
Confidence 3445556666666666666666654210 011 133444444445556777776665555443 2 233
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhcccc
Q 039873 377 ALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT---FVGVLSACGHLGL 453 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~~~~g~ 453 (709)
++||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..+|.+-.+ .
T Consensus 279 ---Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~ 336 (1226)
T KOG4279|consen 279 ---DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--H 336 (1226)
T ss_pred ---ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--h
Confidence 367777765 33322 12334555666788888888877 6787553 4445544322 1
Q ss_pred HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039873 454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYIL 533 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 533 (709)
++...++ .. ..-.|-.+++|.|.++.-.++++- ...+.+-.-.+|+.+|.++.++|.
T Consensus 337 Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 337 FENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred ccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHh
Confidence 2211111 11 112344567888988877776542 223445556788999999999999
Q ss_pred hcCCCC
Q 039873 534 HMDPND 539 (709)
Q Consensus 534 ~~~p~~ 539 (709)
++.|+.
T Consensus 394 KLk~P~ 399 (1226)
T KOG4279|consen 394 KLKPPV 399 (1226)
T ss_pred ccCCce
Confidence 999864
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.35 E-value=3.8 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 511 TLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 511 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
.+.-|+.+.|+++.|.+..+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3556889999999999999999999999853
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.25 E-value=9.5 Score=34.42 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC----chhHHHHHHHHH
Q 039873 522 YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR----WDGVSKIRKLMK 567 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 567 (709)
+++|+.-+++++.++|+...++.+++++|...|. -.+|.+.|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777888889999999999999999988764 334455555544
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.11 E-value=1.4e+02 Score=33.61 Aligned_cols=140 Identities=6% Similarity=0.029 Sum_probs=64.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCC
Q 039873 70 LTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSG 149 (709)
Q Consensus 70 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~ 149 (709)
++...|+.|.-.|++++|-.+--.|-..+..-|.--+..+...+.......+ ++ ...-..+...|..+|..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lP-t~~~rL~p~vYemvLve~L~-- 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LP-TGPPRLKPLVYEMVLVEFLA-- 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CC-CCCcccCchHHHHHHHHHHH--
Confidence 4555555555556666665555555555555555555555554444332222 22 11112345556666666554
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHh
Q 039873 150 RGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVS 229 (709)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 229 (709)
..-..+++.+.+- +++.+.....+++ ...-+++-.+ +...-..|+.-|...+++..|+.++-..+.
T Consensus 468 --~~~~~F~e~i~~W--p~~Lys~l~iisa---------~~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 468 --SDVKGFLELIKEW--PGHLYSVLTIISA---------TEPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --HHHHHHHHHHHhC--ChhhhhhhHHHhh---------cchHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1112222222211 2222222222111 1111111111 112223378888888999999888877653
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.98 E-value=32 Score=27.68 Aligned_cols=78 Identities=8% Similarity=-0.001 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 039873 252 LKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYE 331 (709)
Q Consensus 252 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (709)
-++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-++-.. +.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555554444311 333333344556788999999999999999999999887654 566667777777777766
Q ss_pred C
Q 039873 332 A 332 (709)
Q Consensus 332 g 332 (709)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 319
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=76 Score=30.37 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCC--HhhHHHHHHHHHHcC
Q 039873 239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRN--VVLWTAMVAACFQNE 316 (709)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g 316 (709)
|.....++....+++++..-+....+. .+.+...|. .....+.|..+.++|..-+ +..++--+..|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333344555666666666554444321 111211111 1123444445555554432 234555566777777
Q ss_pred CHhHHHHHHHHH
Q 039873 317 YFEEALNLFCGM 328 (709)
Q Consensus 317 ~~~~A~~~~~~m 328 (709)
.++-|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 776666555554
No 320
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.85 E-value=4.2 Score=25.31 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=13.0
Q ss_pred CCChhHHhHHHhHHHhcCCHHHHH
Q 039873 369 KEHLIVGNALINMYAKGGNIEAAN 392 (709)
Q Consensus 369 ~~~~~~~~~li~~y~~~g~~~~A~ 392 (709)
+.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555553
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.83 E-value=6.4 Score=25.40 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666677777777777777766543
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.52 E-value=3.3 Score=23.89 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=18.0
Q ss_pred hhHHHHHHHhhhcCCchhHHHHHH
Q 039873 541 GTYILLSNMYAKEKRWDGVSKIRK 564 (709)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~a~~~~~ 564 (709)
.....|+.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888887764
No 323
>PRK09687 putative lyase; Provisional
Probab=75.38 E-value=91 Score=31.02 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCH----hHHHHHHHHH
Q 039873 269 PDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYF----EEALNLFCGM 328 (709)
Q Consensus 269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 328 (709)
+|..+....+..+.+.|..+....+..-+..+|...-...+.++.+.|+. .+++..+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444555555554433222222222334444444445555555542 3455555554
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.95 E-value=5.4 Score=24.45 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777777665
No 325
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.46 E-value=43 Score=29.30 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=43.5
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcC---------CCChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039873 376 NALINMYAKGGNIEAANKVFSDMR---------YRDIITWNAMICGYSHHGL-GREALTLFQNMLAAEERPNHVTFVGVL 445 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll 445 (709)
|.++.-.+..+++.....+++.+. ..+-.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444432 2344567777777655544 334566777777766777777777777
Q ss_pred HHHhcc
Q 039873 446 SACGHL 451 (709)
Q Consensus 446 ~a~~~~ 451 (709)
.+|.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776553
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.42 E-value=20 Score=28.96 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=34.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 498 RSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 498 ~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
-.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|--++
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 35567799999999999999999999999999988754333333555443
No 327
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.63 E-value=51 Score=26.92 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
..++|..|.+.+...+- ....+.-.-+..+...|++++|+..=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777777776653 233333344556778899999955555566788888877654 567877888888887766
Q ss_pred CCCCCCHHHHH
Q 039873 432 AEERPNHVTFV 442 (709)
Q Consensus 432 ~g~~pd~~t~~ 442 (709)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.55 E-value=21 Score=28.47 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=36.7
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 498 RSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 498 ~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
-.+.+-|++.+..+-+.||++-+|+..|.++++-+...-..+...|-.++
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34567789999999999999999999999999987643222333454443
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.81 E-value=19 Score=33.23 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=49.7
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC----CCchhHHHHHHHhhhcCCchhH
Q 039873 486 KAGLLDEAEKFMRSTPVKW--DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP----NDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a 559 (709)
+.|+ ++|++.|-.+.-.| +....-.-+..|....|.+++++++-+++++.+ -|+..+.+|+++|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444 45555554442222 333444445556667789999999999988642 2678899999999999998887
Q ss_pred H
Q 039873 560 S 560 (709)
Q Consensus 560 ~ 560 (709)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 330
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.65 E-value=1.5e+02 Score=31.41 Aligned_cols=148 Identities=9% Similarity=-0.001 Sum_probs=67.6
Q ss_pred HHHHHhcCChHHHHHHHHhccCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccc--hHHHHHHHhccC
Q 039873 278 ISMYGKCGKFSNAKKVFEGLETRN----VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT--FAVMLNSAAGLS 351 (709)
Q Consensus 278 i~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~ 351 (709)
+...++.|+.+.+..+++.-...+ ..-++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 444456666666666665432111 111122 2223344554 34444555666654422 123344444556
Q ss_pred ChhHHHHHHHHHHHhCCCCChh--HHhHHHhHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHHHHHcCChHHHHHHH
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLI--VGNALINMYAKGGNIEAANKVFSDMRYRDIIT---WNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~ 426 (709)
+.+..+. +.+.|..++.. ...+.+...+..|+.+-+..+++.-..++... ..+.+..-+..|+. ++.
T Consensus 147 ~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv 218 (413)
T PHA02875 147 DIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIV 218 (413)
T ss_pred CHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHH
Confidence 6554433 34444433221 12233344556677776666666544433221 12333333445554 344
Q ss_pred HHHHHCCCCCCH
Q 039873 427 QNMLAAEERPNH 438 (709)
Q Consensus 427 ~~m~~~g~~pd~ 438 (709)
+.+.+.|..||.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 555566766664
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.21 E-value=8.6 Score=22.26 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444455555566666666665555544
No 332
>PRK10941 hypothetical protein; Provisional
Probab=69.91 E-value=18 Score=35.62 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.+.|-.++.+.++++.|..+.+.++.+.|+++.-..--+-+|.+.|.+..|..=++...++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3566678899999999999999999999999888888899999999999999988877664
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.45 E-value=38 Score=31.36 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhh--CCCCChHHHHHHHHHHHhcCCHHHH
Q 039873 420 REALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQI--GIVPGLEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A 493 (709)
++|++.|-++...+.--+......+ ..+--..+.+++++++....+-. +-.+|+..+.+|+..|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4555555555555433232222222 23333445566666555554422 1134455555566666555555554
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.38 E-value=5.8 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=23.3
Q ss_pred hHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 542 TYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 542 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888899999999999999988764
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.35 E-value=8.6 Score=23.15 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=20.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 512 LLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 512 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
+..++...|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445667778888888888888887775
No 336
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=68.13 E-value=1.2e+02 Score=29.34 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH
Q 039873 410 ICGYSHHGLGREALTLFQNMLAAE-ERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE 475 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g-~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 475 (709)
+..-.+.|++++|.+.|+.+..+. ..| ...+...++-++-+.+++++|....++.++.++-.|++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 334456777888888888877642 111 244666667777778888888888888777777777753
No 337
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.27 E-value=30 Score=24.21 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=21.6
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 543 YILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 543 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...++-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45677788999999999999999976
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.97 E-value=57 Score=35.37 Aligned_cols=101 Identities=11% Similarity=-0.013 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHH
Q 039873 180 YTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVH 259 (709)
Q Consensus 180 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 259 (709)
..+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34667777777766543 3556688888888888888888888877653 556666666677766555555
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 039873 260 SQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL 297 (709)
Q Consensus 260 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 297 (709)
....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 55555552 222333456667777777766543
No 339
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.14 E-value=1.1e+02 Score=27.72 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=61.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH-HHHHH--HHHHHhcC
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE-HYTCI--VGLLSKAG 488 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 488 (709)
+++.+..++|+.-|..+.+.|...-.+ .-.......+..|+...|...|.++-.+..+ |.+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 355666777777777777765433222 1222233345667777777777776543222 2211 11111 12334556
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873 489 LLDEAEKFMRSTPVKWD---VVAWHTLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 489 ~~~~A~~~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
.+++.....+.+....+ ...-.+|.-+-.+.|++..|...|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666655554432212 22233444455556666666666665554
No 340
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.87 E-value=2.5e+02 Score=31.84 Aligned_cols=250 Identities=8% Similarity=0.003 Sum_probs=112.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChh
Q 039873 275 SAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALR 354 (709)
Q Consensus 275 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 354 (709)
..-+..+.+.+++.....++.. +..+...-.....+....|+.++|.+..+.+=..|. ........++..+.+.|.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCC
Confidence 3344445566666666663322 233444445556666677777666666666544442 23344555555555444332
Q ss_pred HHHHHHHHH---HHhC-----------CCCC-hhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HcC
Q 039873 355 HGDLLHAHI---EKSG-----------FKEH-LIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYS--HHG 417 (709)
Q Consensus 355 ~a~~i~~~~---~~~g-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--~~g 417 (709)
... ++..+ ...| +.++ ......++..+.+ ...+...+.... ++...-...+.++. ...
T Consensus 181 ~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 181 PLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred HHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHh
Confidence 211 11111 1111 0111 1112222222222 222222222211 11111111111221 234
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 418 LGREALTLFQNMLAA-EERPNHV--TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 418 ~~~~A~~~~~~m~~~-g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
+.+.|..++.+.... +..+... ....+.......+...++...+..... ...+.....--+..-.+.++++.+.
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHHH
Confidence 567788888776443 2333322 222232222222224455555554321 1123344444455555788888888
Q ss_pred HHHHhCCCC-CCHHHHHH-HHHHHHhcCCchHHHHHHHHHHh
Q 039873 495 KFMRSTPVK-WDVVAWHT-LLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 495 ~~~~~~~~~-pd~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
..|..|+-. .+...|.- +..+....|+.+.|...++++..
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888777421 11122222 33454557888888888888743
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.87 E-value=1.1e+02 Score=31.80 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=51.7
Q ss_pred CHHHHHHHH---HHHHhcCCchHHHHHHHHHHhcCCC-CchhHHHHHHHhh-hcCCchhHHHHHHHHHh
Q 039873 505 DVVAWHTLL---NASRVHQNYGFGRRIAEYILHMDPN-DVGTYILLSNMYA-KEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 505 d~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 568 (709)
|...|.++. ....+.|-+..|.+..+-++.++|. |+-.-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445555544 4678899999999999999999998 8888888899887 78888888888877654
No 342
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.37 E-value=79 Score=25.90 Aligned_cols=79 Identities=8% Similarity=-0.005 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873 251 DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330 (709)
Q Consensus 251 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (709)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-.+ +.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45677777777766653 3344444445567788888888555555566788888776553 67777777777777765
Q ss_pred CC
Q 039873 331 EA 332 (709)
Q Consensus 331 ~g 332 (709)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 343
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.08 E-value=1.2e+02 Score=32.17 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=55.5
Q ss_pred CCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc---cCCCHhhHHHHH
Q 039873 233 RWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL---ETRNVVLWTAMV 309 (709)
Q Consensus 233 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li 309 (709)
..+......++..+ .|+...+..+++.+...+-..+ .+....++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444555554443 5777777777776654321111 12222222221 122223344555
Q ss_pred HHHHH---cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhcc
Q 039873 310 AACFQ---NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGL 350 (709)
Q Consensus 310 ~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 350 (709)
+++.+ .++.+.|+..+..|.+.|..|....-..+..++-..
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 55555 478999999999999999888765555555444333
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.05 E-value=71 Score=33.57 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=20.1
Q ss_pred hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
.+.|.++.+.+.+....+ -+.....+..+++...-+.|++++|...
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 344555555544444322 1222233444444444444555554444
No 345
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.43 E-value=1.4e+02 Score=31.70 Aligned_cols=13 Identities=0% Similarity=-0.325 Sum_probs=6.3
Q ss_pred HHHHHhCCCCCCc
Q 039873 325 FCGMEYEAIRPNE 337 (709)
Q Consensus 325 ~~~m~~~g~~pd~ 337 (709)
.+.+.+.|..|+.
T Consensus 184 v~~Ll~~ga~~n~ 196 (413)
T PHA02875 184 CKMLLDSGANIDY 196 (413)
T ss_pred HHHHHhCCCCCCc
Confidence 3344455555543
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.36 E-value=73 Score=27.41 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHh-cCCCCc-hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 521 NYGFGRRIAEYILH-MDPNDV-GTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 521 ~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+..+++.+++.+.+ -.|... ....-|.-++.+.|+|++++++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 44556666666665 223221 2223344456666666666666666654
No 347
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.23 E-value=17 Score=33.85 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=39.4
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH--HHHhcCCch
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLN--ASRVHQNYG 523 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~--~~~~~g~~~ 523 (709)
|-..|.+.-|+-=|... ..+.|+ +.+||-|.--+...|+++.|.+.|+.. .+.|. .-|..+-. ++---|++.
T Consensus 75 YDSlGL~~LAR~DftQa---Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 75 YDSLGLRALARNDFSQA---LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhHHHHHhhhhhhh---hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchH
Confidence 34445555555444443 234444 234555555555555666555555543 22221 01111111 122234555
Q ss_pred HHHHHHHHHHhcCCCCc
Q 039873 524 FGRRIAEYILHMDPNDV 540 (709)
Q Consensus 524 ~a~~~~~~~~~~~p~~~ 540 (709)
.|.+-+-+.-+-+|+||
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 55555555555555543
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.44 E-value=1.7e+02 Score=29.00 Aligned_cols=58 Identities=5% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhcc-----CCCHhhHHHHHHHHHHcCCHhHHHHH
Q 039873 267 IEPDVFINSAMISMYGKCGKFSNAKKVFEGLE-----TRNVVLWTAMVAACFQNEYFEEALNL 324 (709)
Q Consensus 267 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 324 (709)
-.++..+....+..+++.+++..-.++++... ..|...|...|......|+..-..++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 35556666667777777777777777666543 24667777777777777776544333
No 349
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.04 E-value=40 Score=29.46 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhcCCC---------CCcchHHHHHHHHHhCCC-hhHHHHHHHHhhhCCCCCCChhhH
Q 039873 69 VLTNSLVNLYAKCNQISIARQLFDNMRQ---------RNVVSYSSLMTWYLHNGF-LLETLKLFKNMVSGDNLEPNEYIF 138 (709)
Q Consensus 69 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p~~~t~ 138 (709)
...|+++.-.+..+++.....+++.+.. .+-.+|++++.+.++... ---+..+|..|+ +.+.+++..-|
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy 118 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHH
Confidence 4566777776777777777776666642 456678888888866665 345677888887 57788888889
Q ss_pred HHHHHHHhcC
Q 039873 139 SIVLSSCSRS 148 (709)
Q Consensus 139 ~~ll~~~~~~ 148 (709)
..++++|.+.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 8998888764
No 350
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.63 E-value=2.7e+02 Score=30.49 Aligned_cols=178 Identities=12% Similarity=0.038 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH
Q 039873 270 DVFINSAMISMYGKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS 346 (709)
Q Consensus 270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 346 (709)
+..+|..-++.-.+.|+.+.+.-+|++...+ -...|--.+.-....|+.+-|-.++..-.+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777778788888888888888887643 2234544454444557777776666554443222222211111112
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH---HHHhhcC--CCChhhHHHHHHHH-----HHc
Q 039873 347 AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN---KVFSDMR--YRDIITWNAMICGY-----SHH 416 (709)
Q Consensus 347 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~f~~~~--~~~~~~~~~li~~~-----~~~ 416 (709)
+-..|+...|+.+++.+...- +.-..+-..-+.+..+.|..+.+. .++.... +.+....+.+..-+ .-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 344578888888888777654 333344444566667777777776 3333332 12222222222222 224
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039873 417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACG 449 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 449 (709)
++.+.|..++.+|.+. .+++..-|..++.-+.
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 5666777777776663 3444445555554443
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=1.7e+02 Score=28.03 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=12.6
Q ss_pred CCchHHHHHHHHHHhcCCC
Q 039873 520 QNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~p~ 538 (709)
.+.--+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555566677777777775
No 352
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.99 E-value=1.9e+02 Score=28.44 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHhCCCccHHHHHHHHH----HhCCCCCChhhHHHHHHHHhcCCCcH-HHHHHHHHHHH---cC--CCCchHHHHHHH
Q 039873 209 NGLIENECFRGGVEVLGKM----VSGSVRWDSVTYVNAFGLSASLKDLK-LGLQVHSQMLK---SD--IEPDVFINSAMI 278 (709)
Q Consensus 209 ~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~---~g--~~~~~~~~~~li 278 (709)
..+.+.|+...|-++-.-| .+.+.++|......++......+.-+ .-.++...+++ .| -..|......+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3445556655544443333 33566666655555555544433211 12233333332 22 123667778888
Q ss_pred HHHHhcCChHHHHHHHHhccCCCHhhH
Q 039873 279 SMYGKCGKFSNAKKVFEGLETRNVVLW 305 (709)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~m~~~~~~~~ 305 (709)
..|.+.|++.+|+.-|-.-..++...+
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 888888888888887765544444333
No 353
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.97 E-value=2.4e+02 Score=29.67 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=43.5
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 039873 376 NALINMYAKGGNIEAANKVFSDMRYR---DIITWNAMICGYSHHGLGREALTLFQNMLAAE 433 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 433 (709)
..|+.-|...|++.+|....+++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667788889999999999887654 45678888888888887776777776665555
No 354
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.84 E-value=67 Score=29.68 Aligned_cols=57 Identities=18% Similarity=0.047 Sum_probs=34.5
Q ss_pred HHHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHH---HHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 481 VGLLSKAGLLDEAEKFMR-STPVKWDVVAWHTLL---NASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~-~~~~~pd~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
..++.+.+.++.|.+-.. .+.+.|. .-.+|. .+|.+...++.|++-++++++.+|..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 344555666666655433 2222232 222333 35667778899999999999999865
No 355
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.27 E-value=1.3e+02 Score=28.74 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=14.7
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039873 485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASR 517 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~ 517 (709)
..+|.+.||..+-+...-+-....|..++..|.
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 344555555555554431111234444554444
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.80 E-value=26 Score=26.80 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHH
Q 039873 450 HLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 496 (709)
+....++|+..|....++..-.|+. .+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666543333332 3556667777777777766665
No 357
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=57.63 E-value=2.4e+02 Score=29.19 Aligned_cols=194 Identities=14% Similarity=0.204 Sum_probs=115.5
Q ss_pred CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHH--HHHHHCCCCCCHHHHHHHH
Q 039873 368 FKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLF--QNMLAAEERPNHVTFVGVL 445 (709)
Q Consensus 368 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~pd~~t~~~ll 445 (709)
...+..+...+++.+...++++.--+... ...-++|+...|+.-. +-|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 34445555666667776666654333221 2224567777666532 2233323356666666555
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------H
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTL------------L 513 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~l------------l 513 (709)
..... +-+|.-+. +.. ....-..|...+-.+|++++|..++.+.+++ ||+++ +
T Consensus 114 ~tLr~---VtegkIyv-EvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQm 178 (439)
T KOG1498|consen 114 ETLRT---VTEGKIYV-EVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQM 178 (439)
T ss_pred HHHHH---hhcCceEE-eeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHH
Confidence 54321 11111110 000 0112335677788999999999998877643 33332 3
Q ss_pred HHHHhcCCchHHHHHHHHHHhcC---CC----CchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEE
Q 039873 514 NASRVHQNYGFGRRIAEYILHMD---PN----DVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTT 586 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 586 (709)
.-|...+|+-.|.-+.+++...- |+ ....|..++.+..+.+.+-++.+.++..-+-|..+...--|+++-..+
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 46778899999988888876532 22 124688999999999999999999999988765444334577654444
Q ss_pred EEEE
Q 039873 587 HVFI 590 (709)
Q Consensus 587 ~~f~ 590 (709)
-.|+
T Consensus 259 v~f~ 262 (439)
T KOG1498|consen 259 VSFC 262 (439)
T ss_pred eeEE
Confidence 3444
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.34 E-value=1.8e+02 Score=27.78 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=7.0
Q ss_pred cCCHhHHHHHHHH
Q 039873 315 NEYFEEALNLFCG 327 (709)
Q Consensus 315 ~g~~~~A~~~~~~ 327 (709)
.+.+++|.++|.+
T Consensus 27 ~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 27 SNKYEEAAELYER 39 (288)
T ss_pred CcchHHHHHHHHH
Confidence 3455566555544
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.77 E-value=32 Score=32.15 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMR-STPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~-~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
.+.-++.+.+.+++++|+...+ ...-+| |...-..|+.-++..|++++|..-++-.-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445677788899999988754 333345 466667788889999999999999999888988764
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.67 E-value=3.2e+02 Score=30.39 Aligned_cols=45 Identities=4% Similarity=-0.170 Sum_probs=26.1
Q ss_pred CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc-C--CchhHHHHHHHHHh
Q 039873 521 NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE-K--RWDGVSKIRKLMKV 568 (709)
Q Consensus 521 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 568 (709)
+.+.|...+.+..+.. +.....|..++... | .+..|.++++...+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 4566666666665544 45556666666432 1 15677777766654
No 361
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=56.64 E-value=2.1e+02 Score=28.35 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=10.2
Q ss_pred HhhhcCCchhHHHHHHH
Q 039873 549 MYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 549 ~~~~~g~~~~a~~~~~~ 565 (709)
.+.++++|++|.+.++.
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34456666666666654
No 362
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.47 E-value=3.7e+02 Score=31.08 Aligned_cols=130 Identities=13% Similarity=0.013 Sum_probs=82.2
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873 179 LYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQV 258 (709)
Q Consensus 179 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 258 (709)
....||+++.|.+.-..+. |...|..|......+|+.+-|...|++.+. |..+--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3457888888888877665 455799999999999999999999888754 22233335556777776666
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873 259 HSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330 (709)
Q Consensus 259 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (709)
...+..+. |... .-...+ -.|++++=.++++.-...+..-.++ ..+|.-++|.++..+...
T Consensus 721 ~~iae~r~---D~~~-~~qnal--Yl~dv~ervkIl~n~g~~~laylta-----~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIRN---DATG-QFQNAL--YLGDVKERVKILENGGQLPLAYLTA-----AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhhh---hhHH-HHHHHH--HhccHHHHHHHHHhcCcccHHHHHH-----hhcCcHHHHHHHHHhhcc
Confidence 55543332 2111 111112 2477777777777765544332222 345777778887777755
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.40 E-value=1.4e+02 Score=28.98 Aligned_cols=182 Identities=10% Similarity=0.048 Sum_probs=105.5
Q ss_pred cCCHHHHHHHHhhcCC----C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCC--CHHHHHHHHHHHhccc
Q 039873 385 GGNIEAANKVFSDMRY----R---DIITWNAMICGYSHHGLGREALTLFQNMLA---AEERP--NHVTFVGVLSACGHLG 452 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p--d~~t~~~ll~a~~~~g 452 (709)
..++++|+.-|++..+ + .......||..+.+.|++++.++.|.+|.. +.+.- +..+.++++.-.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4467788888877652 1 234556678888899999999988888864 22222 3456777777666555
Q ss_pred cHHHHHHHHHHHHHhhCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHhCC----C---CCC-------HHHHHHHHH
Q 039873 453 LVQEGFYYLNHLMKQIGIV----PGLEHYTCIVGLLSKAGLLDEAEKFMRSTP----V---KWD-------VVAWHTLLN 514 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~---~pd-------~~~~~~ll~ 514 (709)
+.+--.++++.-.....-. ....+-+-|...|...|.+..-.++++++. . +.| ..+|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 5555555554433221111 112233456666666666666666655331 0 111 234455556
Q ss_pred HHHhcCCchHHHHHHHHHHhcCC--CCchhHH----HHHHHhhhcCCchhHHH-HHHHH
Q 039873 515 ASRVHQNYGFGRRIAEYILHMDP--NDVGTYI----LLSNMYAKEKRWDGVSK-IRKLM 566 (709)
Q Consensus 515 ~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~----~l~~~~~~~g~~~~a~~-~~~~m 566 (709)
.|....+-..-..++++.+.+.. +.|-..- +=+.+..+.|+|++|.. +|+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 67777888888889998887652 2222211 22345567788888854 34433
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.45 E-value=2.3e+02 Score=30.12 Aligned_cols=43 Identities=9% Similarity=-0.040 Sum_probs=27.1
Q ss_pred cHHHHHHHHHh---CCCccHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 039873 203 EYNSVLNGLIE---NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGL 245 (709)
Q Consensus 203 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 245 (709)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555554 47788888888888888877665443333333
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.25 E-value=65 Score=33.83 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=73.3
Q ss_pred hcCCHHHHH-HHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873 384 KGGNIEAAN-KVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF 458 (709)
Q Consensus 384 ~~g~~~~A~-~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 458 (709)
..|++..|- ++|.-+. .|+.+...+. .+...|.++.+.+.+...... +.....|...++...-..|.+++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 356665553 4444443 2444444333 356678888888887766543 4455667888888888888999988
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 039873 459 YYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNA 515 (709)
Q Consensus 459 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~ 515 (709)
..-..|... .++ +.++...-.-.--..|-++++.-.+++. .+ .|...-|-.+++.
T Consensus 378 s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 378 STAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 887777542 332 2222222222233456777777776654 12 2344455555554
No 366
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.66 E-value=1.8e+02 Score=27.85 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=61.7
Q ss_pred hcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 384 KGGNIEAANKVFSDMRY-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 384 ~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
..+++++|.+.+-.-.- ++.. .-++.++..+|+.+.|+.+++.+.-..-. ......++.+ ...+.+.+|..+-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 35777888877754321 1211 23777788888899888888875432222 2222333333 34478888877655
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 039873 463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD 505 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd 505 (709)
.... .-....+..++..+.....-....+.+-.+|+.+.
T Consensus 165 ~~~~----~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 165 SYPD----ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred hCch----hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 5322 11134666666666543322333444445565544
No 367
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.37 E-value=1.6e+02 Score=31.95 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=19.9
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcC
Q 039873 376 NALINMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~ 399 (709)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356778889999999999998886
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.18 E-value=4.5e+02 Score=31.37 Aligned_cols=255 Identities=13% Similarity=-0.004 Sum_probs=142.2
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCC
Q 039873 190 KRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEP 269 (709)
Q Consensus 190 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 269 (709)
..+.+.+..+|...-...+..+.+.+. .+++..+....+ .+|...-...+.++.+.+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 345555556777777777777777665 345555555553 234443344444444432211112233333332 5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc
Q 039873 270 DVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG 349 (709)
Q Consensus 270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 349 (709)
|..+..+.+.++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 666666777776654422 12345556666776655666666666554332 12222 13444444555556666
Q ss_pred cCChhH-HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH-HHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 039873 350 LSALRH-GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN-KVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQ 427 (709)
Q Consensus 350 ~~~~~~-a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (709)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 2233333333 456778888888888888765553 34455556676666667777777765 45666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 428 NMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 428 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
.+.. .||...=...+.++.+...-..+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6664 56666666667777775334456666666544
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.01 E-value=29 Score=27.54 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34456666677888778888888888888888888777777654
No 370
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.81 E-value=4.5e+02 Score=31.32 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHH-HHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH
Q 039873 268 EPDVFINSAMISMYGKCGKFSNAK-KVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS 346 (709)
Q Consensus 268 ~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 346 (709)
.+|..+..+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+ .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 345566666666666666544332 23333334443333344445554443 345555544443 2444444445555
Q ss_pred HhccCChhHHHHHHHHHHH
Q 039873 347 AAGLSALRHGDLLHAHIEK 365 (709)
Q Consensus 347 ~~~~~~~~~a~~i~~~~~~ 365 (709)
+.+...-..+...+..+.+
T Consensus 862 L~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 862 LTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhccCCCHHHHHHHHHHHh
Confidence 5554323344444444443
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.86 E-value=87 Score=24.59 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 039873 49 GKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETL 119 (709)
Q Consensus 49 a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 119 (709)
...++...+..|+- +....+.+-..-.+.|+.+.|+++++.++ +....|..++.++...|.-.-|-
T Consensus 21 ~~~v~d~ll~~~il----T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL----TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 35667777776654 22233333332236688999999999999 88888999999988888765543
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.46 E-value=70 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccc
Q 039873 420 REALTLFQNMLAAEERPNH-VTFVGVLSACGHLG 452 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g 452 (709)
++|+.-|++.+. +.|+. .++..+..++...+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 455555666666 67875 47777777766544
No 373
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.40 E-value=2e+02 Score=26.70 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH-----HHHHHHHhcCCHHHH
Q 039873 421 EALTLFQNMLAAEERPNHVTFVG--VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT-----CIVGLLSKAGLLDEA 493 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 493 (709)
+.....+++....-....-++.+ +...+...+++++|...++..+. . |....+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555555555321222222222 23456778888998888876543 2 2223333 344567788999999
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 494 EKFMRSTPVKWDVVA--WHTLLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 494 ~~~~~~~~~~pd~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
+..++... .++-.. -..-...+...|+-++|+..+++.++.+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99988763 222111 222234678889999999999999988744
No 374
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.12 E-value=1.7e+02 Score=25.81 Aligned_cols=66 Identities=20% Similarity=0.038 Sum_probs=34.9
Q ss_pred ccccHHHHHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 039873 450 HLGLVQEGFYYLNHLMKQIGIVPGLE-HYTCIVGLLSKAGLLDEAEKFMRSTPVKW-DVVAWHTLLNASRV 518 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p-d~~~~~~ll~~~~~ 518 (709)
..++.+++..++..+. -+.|+.. .-..-.-.+.+.|++++|..+|++..-.+ ....-..|+.-|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3667777777777663 3344321 11222334567777888877777764332 22333344444443
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.35 E-value=2.7e+02 Score=29.09 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccccHHHHHHHHHHHHH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHV--TFVGVLSACG--HLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 466 (709)
+..++++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888876 555554 2333334432 34567788888877654
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.31 E-value=1.3e+02 Score=29.54 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=45.0
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----
Q 039873 208 LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK---- 283 (709)
Q Consensus 208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---- 283 (709)
|.+++..+++.+++...-+--+.--+.-....-.-|-.|.+.+....+.++-..-++..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777777777777765554433211222223333333456666666666655555543222233335555555543
Q ss_pred -cCChHHHHHHH
Q 039873 284 -CGKFSNAKKVF 294 (709)
Q Consensus 284 -~g~~~~A~~~~ 294 (709)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36666666654
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.30 E-value=27 Score=20.62 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 520 QNYGFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46678888888888887877666665544
No 378
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.08 E-value=2.5e+02 Score=28.23 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=50.9
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC--ChhhH--HHHHHHHHHcCChHHHHHH
Q 039873 350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR--DIITW--NAMICGYSHHGLGREALTL 425 (709)
Q Consensus 350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~--~~li~~~~~~g~~~~A~~~ 425 (709)
..-..+|+.++..+.+.| ...|+ +..+.+.--...+.+.++ |+.+| ..|..+-.+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 344567777777777654 11222 221111111122223333 33333 2344455567888888888
Q ss_pred HHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHH
Q 039873 426 FQNMLAAEERPNHV---TFVGVLSACGHLGLVQEGFYYLNH 463 (709)
Q Consensus 426 ~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~ 463 (709)
|+.+.+. .|-.. ....++.+|.....+.+...++.+
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887663 33111 223456666666555555544443
No 379
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.82 E-value=1.4e+02 Score=32.42 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhh
Q 039873 101 SYSSLMTWYLHNGFLLETLKLFKNMV 126 (709)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (709)
.-..++.-|.+.++.++|+.++..|.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 34457778888888888888888884
No 380
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.69 E-value=78 Score=27.62 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873 490 LDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG 558 (709)
Q Consensus 490 ~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 558 (709)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|...-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 346677777775 233333444556678999999999999999999998888888888776664443
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.30 E-value=26 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=21.5
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 544 ILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 544 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
..|+.+|...|+.+.|++++++....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35788899999999999999988753
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.38 E-value=2.1e+02 Score=28.17 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh-
Q 039873 410 ICGYSHHGLGREALTLFQNMLA--AEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK- 486 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 486 (709)
|.+++..+++.+++...-+--+ ..++|...-...+ -|++.+......++-..-.+. .-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6677777888877765443332 2245554444333 477888888887777766653 222233458888877765
Q ss_pred ----cCCHHHHHHHHHhC
Q 039873 487 ----AGLLDEAEKFMRST 500 (709)
Q Consensus 487 ----~g~~~~A~~~~~~~ 500 (709)
.|.++||++++...
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 59999999987543
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.09 E-value=5.4e+02 Score=30.21 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039873 101 SYSSLMTWYLHNGFLLETLKLFKNMVSGDNLE-PNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVEL 179 (709)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (709)
-|..|+-.|...|..++|+++|.... .+.. -|... .+.-..+.+.+.+.+-+ +. .||-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~--d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~-~~----~Li~~ 565 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV--DEDSDTDSFQ-------------LDGLEKIIEYLKKLGAE-NL----DLILE 565 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh--ccccccccch-------------hhhHHHHHHHHHHhccc-ch----hHHHH
Confidence 38889999999999999999999886 2221 11110 11111133333333322 11 11111
Q ss_pred HH---hcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039873 180 YT---KCLDVEMAKRLLDLLPG--YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSA 247 (709)
Q Consensus 180 y~---~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 247 (709)
|. -..+.+.+.++|-.-.. ....+-. -+-.|+.....+-++..++.+....-.++..-.+.++..|+
T Consensus 566 y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 566 YADWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11 12334455555544111 0111111 23345666677777777777766555555555555555543
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.04 E-value=15 Score=36.79 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=47.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCchHHHHH
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYGFGRRI 528 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~ 528 (709)
.|.++.|++.|...+. --.+....|.--.+++.+.++...|++=+. ...+.|| ..-|-.--.+-+..|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4556666655555432 112223333333444445555555544333 2223333 11222222233445555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 529 AEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 529 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
+..+.+++-+ ..+-..|-...-+.+..++-.+.+.+..
T Consensus 205 l~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 205 LALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 5555554432 1223333344444444444444444433
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.30 E-value=62 Score=20.50 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCchHHHHH--HHHHHhcCCC
Q 039873 509 WHTLLNASRVHQNYGFGRRI--AEYILHMDPN 538 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 538 (709)
|-.+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44455566666777777777 3355555543
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.14 E-value=1.7e+02 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEY 330 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (709)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999876
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.90 E-value=82 Score=29.20 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 503 KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 503 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555555555
No 388
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.84 E-value=1.4e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHhCCCccHHHHHHHHHHh
Q 039873 202 FEYNSVLNGLIENECFRGGVEVLGKMVS 229 (709)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 229 (709)
.-|..++.-|-..|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999998876
No 389
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.03 E-value=1.5e+02 Score=25.26 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873 524 FGRRIAEYILH--MDPNDVGTYILLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 524 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 565 (709)
.+.++|+.|.. ++-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78889998876 4566778899999999999999999999875
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.48 E-value=57 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=13.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 039873 409 MICGYSHHGLGREALTLFQNMLAA 432 (709)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~ 432 (709)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555556666666666655543
No 391
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.94 E-value=1.2e+02 Score=25.66 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=49.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 039873 422 ALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP 501 (709)
Q Consensus 422 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 501 (709)
..+-++......+-|+.......|.||.+.+++..|.++|+.+..+. .+....|-.+++ +-.-++++++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~ELG 136 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNELG 136 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHhC
Confidence 34445555666789999999999999999999999999999875543 333335666553 4445556655
Q ss_pred C
Q 039873 502 V 502 (709)
Q Consensus 502 ~ 502 (709)
+
T Consensus 137 I 137 (149)
T KOG4077|consen 137 I 137 (149)
T ss_pred C
Confidence 4
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=42.81 E-value=72 Score=24.50 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=33.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHhccccHHHHHHHH
Q 039873 415 HHGLGREALTLFQNMLAAEERP-NH-VTFVGVLSACGHLGLVQEGFYYL 461 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~p-d~-~t~~~ll~a~~~~g~~~~a~~~~ 461 (709)
...+.++|+..|+...+.-..| +. .++..++.|++..|.+.+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888887753333 32 27777888899999888877653
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.74 E-value=73 Score=30.39 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=41.4
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 501 PVKWDV-VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 501 ~~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
-+.|.. ..|..-+-.+.+..+++.+.+--.+++++.|+.......|.........+++|..++.+..
T Consensus 38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 344554 3334444445556666666666666677777666666666666666677777777666664
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.24 E-value=4.1e+02 Score=27.53 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=55.0
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhCCCC--ChHHHHHHHHHHH-hcCCHHHHHHHHHhCCC---------CCCHHHHHHH
Q 039873 445 LSACGHLGLVQEGFYYLNHLMKQIGIVP--GLEHYTCIVGLLS-KAGLLDEAEKFMRSTPV---------KWDVVAWHTL 512 (709)
Q Consensus 445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~pd~~~~~~l 512 (709)
+..+.+.|-+..|.++.+-+. .+.| |+...-.+||.|+ ++++++--.++.+.... -|+ ..|+.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 345677778888887777663 3444 3444555667765 67777766666654322 122 233333
Q ss_pred HHHHHhcCCc---------------hHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 513 LNASRVHQNY---------------GFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 513 l~~~~~~g~~---------------~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
+.-+. .++. +.|.+.+.+++..-| ..+..|.+
T Consensus 186 LA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP---~vl~~Ll~ 232 (360)
T PF04910_consen 186 LAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFP---WVLVPLLD 232 (360)
T ss_pred HHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhH---HHHHHHHH
Confidence 33333 3333 788888888887766 34444443
No 395
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.10 E-value=3.8e+02 Score=27.02 Aligned_cols=86 Identities=10% Similarity=-0.045 Sum_probs=56.4
Q ss_pred ccccHHHHHHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 039873 450 HLGLVQEGFYYLNHLMKQIGI---VPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGR 526 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~ 526 (709)
..+-.+++.+.|...+....- ..+......+.....+.|..++-..+++.....++...-..++.+.+...+.+.-.
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 334467888888888763111 34555666677777788887666666555444457777888999888888988888
Q ss_pred HHHHHHHhc
Q 039873 527 RIAEYILHM 535 (709)
Q Consensus 527 ~~~~~~~~~ 535 (709)
++++.++.-
T Consensus 222 ~~l~~~l~~ 230 (324)
T PF11838_consen 222 RLLDLLLSN 230 (324)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHcCC
Confidence 999988884
No 396
>PRK12798 chemotaxis protein; Reviewed
Probab=41.54 E-value=4.4e+02 Score=27.66 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHhhcCC----CChhhHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHH
Q 039873 385 GGNIEAANKVFSDMRY----RDIITWNAMICGY-SHHGLGREALTLFQNMLAAEERPNH----VTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~ 455 (709)
.|+.++|.+.|..+.. +.+..+-+|+.+- ....++.+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999998873 3455677777654 445689999999999876 45643 23444455678889999
Q ss_pred HHHHHHHHHHHhhCCCCChHHHH-HHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 039873 456 EGFYYLNHLMKQIGIVPGLEHYT-CIVGLLSKAG---LLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEY 531 (709)
Q Consensus 456 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 531 (709)
++..+-....+++...|-...|. .++..+.+.+ ..+.-..++..|.-.--...|-.+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777666666544332 2333333333 3444445566664222266777778888899999999999999
Q ss_pred HHhcCCCCchhHHHHHHHhhh-----cCCchhHHHHHHHHH
Q 039873 532 ILHMDPNDVGTYILLSNMYAK-----EKRWDGVSKIRKLMK 567 (709)
Q Consensus 532 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 567 (709)
++.+... ...-...+..|.. ....+++.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9987633 2333344444432 234566666555443
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.46 E-value=46 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 039873 407 NAMICGYSHHGLGREALTLFQNML 430 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~ 430 (709)
-.+|.||.+.|++++|.++.+++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345556666666666666555544
No 398
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.21 E-value=46 Score=35.04 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=52.0
Q ss_pred hcCCHHHHHHHHH-hCCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873 486 KAGLLDEAEKFMR-STPVKWDVV-AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 486 ~~g~~~~A~~~~~-~~~~~pd~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 563 (709)
+.+.++.|..++. .+.++||-. .|..-..++.+.+++..|..=+.++++.+|.....|+.-+.++.+.+++.+|...+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 3444555555443 233456533 33222356667777777877777888888777777777777777777777777777
Q ss_pred HHHH
Q 039873 564 KLMK 567 (709)
Q Consensus 564 ~~m~ 567 (709)
+...
T Consensus 96 ~~~~ 99 (476)
T KOG0376|consen 96 EKVK 99 (476)
T ss_pred HHhh
Confidence 6554
No 399
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.14 E-value=3e+02 Score=25.57 Aligned_cols=89 Identities=9% Similarity=-0.035 Sum_probs=54.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhh--HHHHHHHHHHcCCHh
Q 039873 244 GLSASLKDLKLGLQVHSQMLKSDIEPD--VFINSAMISMYGKCGKFSNAKKVFEGLETRNVVL--WTAMVAACFQNEYFE 319 (709)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~ 319 (709)
......++++.|...++..+..--+.+ ..+--.|.......|..++|.+.++...+++-.+ -..--..+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345566777777777776654321111 1122234556677788888888888777654322 222235677788888
Q ss_pred HHHHHHHHHHhCC
Q 039873 320 EALNLFCGMEYEA 332 (709)
Q Consensus 320 ~A~~~~~~m~~~g 332 (709)
+|..-|.+.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888777654
No 400
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.11 E-value=7e+02 Score=30.02 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=67.7
Q ss_pred HhHHHhcCCHHHHHHHHhhcCC-------------------C-----------C--hhhHHHHHHHHHHcCChHHHHHHH
Q 039873 379 INMYAKGGNIEAANKVFSDMRY-------------------R-----------D--IITWNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 379 i~~y~~~g~~~~A~~~f~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~~~ 426 (709)
.-+|..+|...+|...|.+... + . ..-|-..+..+-+++..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3457888999999998887641 0 0 123455677777888888888887
Q ss_pred HHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHH
Q 039873 427 QNMLAAEERPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL----EHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 427 ~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A 493 (709)
...++. +++| ..+++.+.+-....|.+-+|.... .+ .||. ....-++-.+..+|.++.-
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~----npdserrrdcLRqlvivLfecg~l~~L 1073 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR----NPDSERRRDCLRQLVIVLFECGELEAL 1073 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc----CCcHHHHHHHHHHHHHHHHhccchHHH
Confidence 777664 3443 235566666667777777765443 22 2332 3455677777777776543
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.85 E-value=75 Score=34.38 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=69.6
Q ss_pred hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHhcCCchHHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR-STPV-KWDVVAWHTLLNASRVHQNYGFGR 526 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~-~pd~~~~~~ll~~~~~~g~~~~a~ 526 (709)
.-.|+...|...+..+......+.++ ..-.|...+.+.|...+|-.++. .+.+ ...+.++-++..++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 44677778877777664322222222 23456677777888888888754 3332 234667777888888888999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 527 RIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 527 ~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
+.++.+++++|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999988877776655433
No 402
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.94 E-value=6.1e+02 Score=28.81 Aligned_cols=247 Identities=9% Similarity=-0.060 Sum_probs=120.5
Q ss_pred cCCHhHHHHHHHHHHhC-CCCCCcc--chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873 315 NEYFEEALNLFCGMEYE-AIRPNEF--TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA 391 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 391 (709)
..+.+.|..++.+.... +..++.. ....+.......+....+...+....... .+..+...-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34567788888776443 2222221 12222222222211334444444333221 2333444445555577888888
Q ss_pred HHHHhhcCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH-HHHHHHHHHh
Q 039873 392 NKVFSDMRY--RDI-ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEG-FYYLNHLMKQ 467 (709)
Q Consensus 392 ~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~~ 467 (709)
...|..|+. .+. .-.-=+..++...|+.++|...|++... . .+|-+++.+- +.|..-.- ......-...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCCCCCCCCCchhhh
Confidence 888888763 111 1122245565667888888888888633 1 2354444321 12211000 0000000000
Q ss_pred hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC---CCCchhHH
Q 039873 468 IGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD---PNDVGTYI 544 (709)
Q Consensus 468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~ 544 (709)
....| .-.-+..+...|...+|...+..+.-..+......+...-...|..+.+..........+ -.-+..|.
T Consensus 405 ~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 405 LTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred hccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00011 112345566788999988876654323455555555556667888888887776543211 01123466
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHhCCCccC
Q 039873 545 LLSNMYAKEKRWDGVSKIRKLMKVRKVKKE 574 (709)
Q Consensus 545 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 574 (709)
..+..+++.-.++.+.-.--...|.+..+.
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 666666666666665533223335555444
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.68 E-value=49 Score=37.51 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK 495 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (709)
+.++++.+.+.+.-.--| .++|.-+-+.|-.+-|+.+.+.-..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 345566555544332222 12333445566666665554432221 123456888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873 496 FMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 496 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
.-++.. |..+|..|...-..+||.+.|+..+++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 877764 678888888888888888888888877554
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.47 E-value=1.2e+02 Score=20.72 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=22.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 414 SHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777766666665554
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.53 E-value=60 Score=32.13 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
-||..|..-.+.|++++|+.+++|..+.|+.--..||...++
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 467888889999999999999999999887766667665443
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.09 E-value=5.5e+02 Score=27.76 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873 305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384 (709)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 384 (709)
|+-.+.+|... .+.+--++..+..++|+ ........-..+....+.-.|..+-+.+.-+.-..|....-++++.++.
T Consensus 2 ~tr~~~~ys~~-k~keld~~i~~~~~~~~--~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~ 78 (711)
T COG1747 2 DTRDLTAYSAE-KFKELDRIIAEAKRQSI--LDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGD 78 (711)
T ss_pred cchHHhHhhHH-HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhcc
Q ss_pred cCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 385 GGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
.-..+-...+-.+|. ..+-..+..++..|.++ ..++-..+|+++.+ ..-|.+.+..-|.-+...++.+.+..+|.
T Consensus 79 n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEkik~sk~a~~f~ 155 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEKIKKSKAAEFFG 155 (711)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHHhchhhHHHHHH
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHh--cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873 463 HLMKQIGIVPGLEHYTCIVGLLSK--AGLLDEAEKFMRST----PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD 536 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~----~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 536 (709)
++....=-........-+-.-+.. ..+.+.-+.+.... +...-.+.+.-+-.-|....|+++|+++...+++.+
T Consensus 156 Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 156 KALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Q ss_pred CCCchhHHHHHHHhhh--------------------cCCchhHHHHHHHHH
Q 039873 537 PNDVGTYILLSNMYAK--------------------EKRWDGVSKIRKLMK 567 (709)
Q Consensus 537 p~~~~~~~~l~~~~~~--------------------~g~~~~a~~~~~~m~ 567 (709)
..|.-+--.++.-+-. -.++.++..-|+...
T Consensus 236 ~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 236 EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.07 E-value=2e+02 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHH
Q 039873 384 KGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREAL 423 (709)
Q Consensus 384 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (709)
..|+.+.|.+++..++ +....|...++++...|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777888888777 77777777777777777655443
No 408
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.73 E-value=42 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHH
Q 039873 313 FQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSA 347 (709)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 347 (709)
-..|.-.+|..+|++|++.|-+||. |..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667889999999999988885 56666554
No 409
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.70 E-value=3.3e+02 Score=24.83 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=43.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQN 521 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~ 521 (709)
.-|.-|.+.|+++.+...|..+...++-.. ...++.. -+.++.++++... ...|..|... ...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 445667777888888777777654322221 2222221 2233333333221 1223333221 145
Q ss_pred chHHHHHHHHHHhcCCCCchhHHH
Q 039873 522 YGFGRRIAEYILHMDPNDVGTYIL 545 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~p~~~~~~~~ 545 (709)
.+....+.+.+++++|++-.++..
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Confidence 667777778888887654444433
No 410
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.50 E-value=2.6e+02 Score=31.25 Aligned_cols=94 Identities=9% Similarity=-0.011 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 039873 201 VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISM 280 (709)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 280 (709)
...|..-+.-+...++.. ....+.+...-.-.+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334555555444433222 44444444433334455566677777777777777776665543321 12234455566
Q ss_pred HHhcCChHHHHHHHHhcc
Q 039873 281 YGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~ 298 (709)
+.++|+......+-+.+.
T Consensus 448 ~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HH----------------
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 667777666555555443
No 411
>PF15161 Neuropep_like: Neuropeptide-like
Probab=36.41 E-value=16 Score=25.28 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=11.6
Q ss_pred ccccccchhHHHHHHhh
Q 039873 665 NLRMCDDCHSAVKLISK 681 (709)
Q Consensus 665 ~l~~~~~~h~~~~~~s~ 681 (709)
--|-|.|||.|- |+.+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 357899999765 5553
No 412
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.40 E-value=6.7e+02 Score=28.26 Aligned_cols=161 Identities=10% Similarity=0.053 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHH-ccCChHHHHHHHhcCCC---CCcc------hHHHHHHHHHhCCChhHHHHHHHHhhhC---CCCCC
Q 039873 67 NVVLTNSLVNLYA-KCNQISIARQLFDNMRQ---RNVV------SYSSLMTWYLHNGFLLETLKLFKNMVSG---DNLEP 133 (709)
Q Consensus 67 ~~~~~~~ll~~~~-~~g~~~~A~~~f~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p 133 (709)
...++-.+...|. ...+++.|+..+++... ++.. .-..++..+.+.+... |+...++..+. .+..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3445666666666 45788999988886531 2111 1223455566665555 88887775421 12222
Q ss_pred ChhhHHHH-HHHHhcCCCchHHHHHHHHHHHhC---CCCchhHHHHHHHHHH--hcCChHHHHHHHhhC----C------
Q 039873 134 NEYIFSIV-LSSCSRSGRGAEGRQCHGYVFKSG---LVFCKYVRNALVELYT--KCLDVEMAKRLLDLL----P------ 197 (709)
Q Consensus 134 ~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~~----~------ 197 (709)
-...|..+ +..+...++...|.+.++.+...- -++-.++.-.++.+.. +.+..+++.+..+++ .
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 33334443 222223368888888887776643 2344455544444333 344455555554433 1
Q ss_pred ---CCCcccHHHHHH--HHHhCCCccHHHHHHHHHH
Q 039873 198 ---GYDVFEYNSVLN--GLIENECFRGGVEVLGKMV 228 (709)
Q Consensus 198 ---~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~ 228 (709)
.+-...|..++. .+...|+++.+...++++.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123345666665 4456777777776666654
No 413
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.12 E-value=57 Score=32.15 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=29.1
Q ss_pred hcCCHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhH
Q 039873 486 KAGLLDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTY 543 (709)
Q Consensus 486 ~~g~~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 543 (709)
+.|+.++|..+|+ .+.+.|+ +....-+..-...+++.-+|.+.+-+++.+.|.+..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4556666666554 3333443 22222222233344556666666666666666554433
No 414
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.96 E-value=4.5e+02 Score=26.14 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEALNLFCGME 329 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (709)
.+.....|..+|.+.+|..+-+....- +...|-.++..++..|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445567889999999999998887653 55778889999999999888888887775
No 415
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.89 E-value=61 Score=31.93 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=41.3
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 516 SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 516 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
..+.|+.++|..+|+.++.+.|.++....-++.......+.-+|-+++-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 457899999999999999999999988887777776666677776666443
No 416
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.82 E-value=36 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=24.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039873 415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC 448 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 448 (709)
..|.-.+|..+|++|+..|-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345566789999999999999984 55666554
No 417
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=35.23 E-value=2.5e+02 Score=23.89 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCchHHHHHHH
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAW-HTLLNASRVHQNYGFGRRIAE 530 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~-~~ll~~~~~~g~~~~a~~~~~ 530 (709)
.+..++..++.-+|..++|.++++....-+.-... .-++..|+...+.++-.++-+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556666666677777777777665544443332 235556665555444444433
No 418
>PRK09169 hypothetical protein; Validated
Probab=34.00 E-value=1.2e+03 Score=30.61 Aligned_cols=464 Identities=12% Similarity=-0.012 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-----CChhhHHHHHHHHhcCCCchHHHHHHHHH-------HHhCCCC
Q 039873 101 SYSSLMTWYLHNGFLLETLKLFKNMVSGDNLE-----PNEYIFSIVLSSCSRSGRGAEGRQCHGYV-------FKSGLVF 168 (709)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-------~~~g~~~ 168 (709)
.|..+.+.+++.-+.....+.+.++- ..-+. .+...+..+|+++++-.+-..+...-..+ .+.-...
T Consensus 124 ~~a~l~n~lsK~~d~~aC~~a~a~ia-~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al 202 (2316)
T PRK09169 124 QLAHLGNKLSKYPDRPACMAAIAWIA-GQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAM 202 (2316)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhc
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----------CcccHHHHHHHHHhCCCccHHHHHHHHHHh-------C
Q 039873 169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGY-----------DVFEYNSVLNGLIENECFRGGVEVLGKMVS-------G 230 (709)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~ 230 (709)
+..-...++++++|--+-......-+.+..+ +......+++++.|-.+-+.+...-..+-. .
T Consensus 203 ~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~l 282 (2316)
T PRK09169 203 DAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGL 282 (2316)
T ss_pred chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhh
Q ss_pred CCCCChhhHHHHHHHHhcCCCcH--------HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC--
Q 039873 231 SVRWDSVTYVNAFGLSASLKDLK--------LGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR-- 300 (709)
Q Consensus 231 g~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-- 300 (709)
....|..-+...++++++..+-+ .|.++..... ..-..+..-....+++++|..+.+.+....+.+-.+
T Consensus 283 r~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 283 RLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG-LLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q ss_pred ---------CHhhHHHHHHHHHHcCCHh----HHHHHHHHHHhC---CCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873 301 ---------NVVLWTAMVAACFQNEYFE----EALNLFCGMEYE---AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE 364 (709)
Q Consensus 301 ---------~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~---g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 364 (709)
|..-....+.++++-++.+ .|..+...+... .-..|..-...++.+|++.+.-+.+.+....+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Q ss_pred H-------hCCCCChhHHhHHHhHHHhcCCHH----HHHHHHhhcCCC-------ChhhHHHHHHHHHHcCChHHHHHHH
Q 039873 365 K-------SGFKEHLIVGNALINMYAKGGNIE----AANKVFSDMRYR-------DIITWNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 365 ~-------~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~ 426 (709)
. ..-..+..-....+++++|.++-+ .+..+...+... +..-....+.++++-+..+.+...-
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Q ss_pred HHH-------HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCH---
Q 039873 427 QNM-------LAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP------GLEHYTCIVGLLSKAGLL--- 490 (709)
Q Consensus 427 ~~m-------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~--- 490 (709)
..+ -..--.-|..-+...++++++-.+.+.+...-..+.....-.| +.......+.+++|.+.-
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Q ss_pred -HHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCchHHHHHHHHHHh--------cCCCCchhHHHHHHHhhhcCC
Q 039873 491 -DEAEKFMRSTPVKW------DVVAWHTLLNASRVHQNYGFGRRIAEYILH--------MDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 491 -~~A~~~~~~~~~~p------d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~ 555 (709)
+-|..+.....-+| |..-+..+++++.+-.+.+........+-. ..--++.....++|++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Q ss_pred chhHHHHHHHH
Q 039873 556 WDGVSKIRKLM 566 (709)
Q Consensus 556 ~~~a~~~~~~m 566 (709)
.+.+.+....+
T Consensus 682 ~~~c~~Aa~aL 692 (2316)
T PRK09169 682 EAACRAAALAL 692 (2316)
T ss_pred cHHHHHHHHHH
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.52 E-value=1.3e+02 Score=20.46 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=16.0
Q ss_pred hCCCccHHHHHHHHHHhCCCCCChhhHHHHH
Q 039873 213 ENECFRGGVEVLGKMVSGSVRWDSVTYVNAF 243 (709)
Q Consensus 213 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 243 (709)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555555554444444
No 420
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.34 E-value=6.4e+02 Score=27.70 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCC-CchhHHHHHHHhh-hcCCchhHHHHHHHHH
Q 039873 515 ASRVHQNYGFGRRIAEYILHMDPN-DVGTYILLSNMYA-KEKRWDGVSKIRKLMK 567 (709)
Q Consensus 515 ~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 567 (709)
...+.|=+..|.+..+.+++++|. |+.....+++.|+ ++.+|+--+++++...
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445566677777777777777766 6666666777765 5566666666666653
No 421
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.24 E-value=2.5e+02 Score=24.30 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
..-|.-+|.+.++++++++..+.+++.+|+|.
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34455688899999999999999999999874
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.08 E-value=63 Score=32.02 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHH
Q 039873 204 YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVN 241 (709)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 241 (709)
||..|...++.|+.++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56777777777777777777777777776644444433
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.06 E-value=1e+02 Score=24.48 Aligned_cols=52 Identities=4% Similarity=-0.032 Sum_probs=33.6
Q ss_pred HhcCCchHHHHHHHHHHhcCC----CC-----chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 517 RVHQNYGFGRRIAEYILHMDP----ND-----VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.+.||+..|.+.+.+...... .. ......++.+....|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345667777665555544221 11 12344667778889999999999988875
No 424
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.54 E-value=1.4e+02 Score=31.50 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 497 MRSTPVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 497 ~~~~~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
|....++|. ..++++-++.+.+++|+..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 445555554 5566777778889999999999999999998854
No 425
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=32.25 E-value=30 Score=18.57 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=10.4
Q ss_pred cccchhHHHHHHhh
Q 039873 668 MCDDCHSAVKLISK 681 (709)
Q Consensus 668 ~~~~~h~~~~~~s~ 681 (709)
+-...|+++|+||.
T Consensus 8 v~qglhe~ikli~n 21 (23)
T PF08225_consen 8 VFQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHHhc
Confidence 34567999999874
No 426
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.69 E-value=5.4e+02 Score=25.75 Aligned_cols=198 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HhhHHHHHH--HHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHH
Q 039873 302 VVLWTAMVA--ACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALI 379 (709)
Q Consensus 302 ~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 379 (709)
+..++-+|. .|...+--++..+++.-+. |+.++...-..++.+.. ...|..|.......+-
T Consensus 111 ~qvf~KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~---------------l~nGt~~~tvl~~L~~ 173 (412)
T KOG2297|consen 111 VQVFQKLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALL---------------LSNGTLPATVLQSLLN 173 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHH---------------HhCCCCCHHHHHHHHH
Q ss_pred hHHHhcC-CHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc------
Q 039873 380 NMYAKGG-NIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG------ 452 (709)
Q Consensus 380 ~~y~~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g------ 452 (709)
+-+.+.| -..-|.++|+... +....|.+|+.+.+.+.-+.-+++ ++||..|--..-..+...|
T Consensus 174 d~LVkeGi~l~F~~~lFk~~~--~Ek~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elve 243 (412)
T KOG2297|consen 174 DNLVKEGIALSFAVKLFKEWL--VEKDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVE 243 (412)
T ss_pred hhHHHHhHHHHHHHHHHHHHH--hhccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHH
Q ss_pred --------------------------cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 039873 453 --------------------------LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDV 506 (709)
Q Consensus 453 --------------------------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~ 506 (709)
.+++...+..+-+++ .--|+..+...+-+.....+.|.+-.++...-.++ ..
T Consensus 244 y~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-hl 321 (412)
T KOG2297|consen 244 YHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-HL 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHhcCCchHHHHH
Q 039873 507 VAWHTLLNASRVHQNYGFGRRI 528 (709)
Q Consensus 507 ~~~~~ll~~~~~~g~~~~a~~~ 528 (709)
-.|.-|+.+++..|+.+..+-+
T Consensus 322 K~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HhhhHHHHHHhcCChHHHHHHH
No 427
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.52 E-value=2.7e+02 Score=26.39 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCc-------hHHHHHHHHHHhcC--C----CCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 511 TLLNASRVHQNY-------GFGRRIAEYILHMD--P----NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 511 ~ll~~~~~~g~~-------~~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
-+...|+..|+. ..|.+.|+++.+.+ | ++......++.++.+.|+.++|.+.|.++...
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344455555553 34555566655533 2 12345667888999999999999999998764
No 428
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.28 E-value=4.1e+02 Score=26.54 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873 276 AMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330 (709)
Q Consensus 276 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (709)
.++..+.+.+++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555556666666666555553 344455667788889999999998887765
No 429
>PRK10941 hypothetical protein; Provisional
Probab=31.24 E-value=4.2e+02 Score=26.15 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHH
Q 039873 407 NAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHY 477 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 477 (709)
+.+-.+|.+.++++.|+...+.+.. +.|+.. -+.--.-.+.+.|.+..|..=++..++...-.|+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4455566666666666666666666 445432 22222333555555555555555554443444444333
No 430
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.98 E-value=7e+02 Score=26.83 Aligned_cols=212 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCC----------cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCC--------hhhHHHHHHHHh
Q 039873 85 SIARQLFDNMRQRN----------VVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPN--------EYIFSIVLSSCS 146 (709)
Q Consensus 85 ~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~~t~~~ll~~~~ 146 (709)
|+|....++.++.| +.....++-.-.-.|++.+|++-...|.+-..-.|. ...-..+---|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred cCCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHH--------HHHHHHh--C
Q 039873 147 RSGRGAEGRQCHGYVFKSGLVFC--KYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNS--------VLNGLIE--N 214 (709)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~--------li~~~~~--~ 214 (709)
..+.++.|+.-|....+.--..| .+.-..+.-.|.+.|+.+.-.++++.+..+|..++.+ .+.|+.. .
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CCccHHHHHHHHHHh-----CCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHH-----cCCCCchHHHHHHHHHHHhc
Q 039873 215 ECFRGGVEVLGKMVS-----GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLK-----SDIEPDVFINSAMISMYGKC 284 (709)
Q Consensus 215 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~li~~y~~~ 284 (709)
+++.||..++++-.+ ...+........+-...-..|+..+++....-... .+++.-......+-+.|-.+
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--hHHHHHHHHh
Q 039873 285 GK--FSNAKKVFEG 296 (709)
Q Consensus 285 g~--~~~A~~~~~~ 296 (709)
|+ .++..+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 431
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=30.55 E-value=4.8e+02 Score=24.80 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTC 479 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 479 (709)
|.+..|+.+.+.+...+|+.+.++-.+. +| |.-+-..++.-++-.|++++|..-++... .+.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 3455677788888888999888887774 45 44455666777888899999887776653 23333 445555
Q ss_pred HHHHHHhcCCHHHHH-HHHHhC--CC---CCCHHHHHH-HHHHHHhc--CCchHHHHHHHHHHhcCCC
Q 039873 480 IVGLLSKAGLLDEAE-KFMRST--PV---KWDVVAWHT-LLNASRVH--QNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 480 li~~~~~~g~~~~A~-~~~~~~--~~---~pd~~~~~~-ll~~~~~~--g~~~~a~~~~~~~~~~~p~ 538 (709)
+|.+ +.++ ++|..- |. .| ...|-. |+.+..-| |.-+....+-+..++..|.
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 5543 2222 345422 11 12 334544 44444333 3444455555666666554
No 432
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.00 E-value=1.8e+02 Score=22.72 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 039873 50 KVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLET 118 (709)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 118 (709)
..+...+.+.|+- +..-.-...+...+.+.|.++.+..+.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl-------t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF-------TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC-------CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4567777776643 2222333344567788999999999999999999999988887765443
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.59 E-value=2.8e+02 Score=23.43 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=13.0
Q ss_pred HHHhhhcCCchhHHHHHHHH
Q 039873 547 SNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 547 ~~~~~~~g~~~~a~~~~~~m 566 (709)
.-++...|+.++|.+.|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44566778888888777654
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.53 E-value=1.2e+02 Score=21.94 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 437 NHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 437 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
|-.--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666666544
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.09 E-value=2.6e+02 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=31.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 499 STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 499 ~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
.+.+-|++-+...-+.+|++-+|+..|.++++-+...
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4556789999999999999999999999999988643
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.00 E-value=1.9e+02 Score=26.70 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=25.0
Q ss_pred ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 039873 450 HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS 499 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 499 (709)
...+.+......+.+.+.....|+..+|..++..+...|+.++|.+.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344433333333333334455555555555556666666666555443
No 437
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.54 E-value=82 Score=29.83 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 480 IVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
+..+..+.|+.+.|.+++.+. ...|+ ...|--+...-.+.|+.+.|.+.+++.++++|+|
T Consensus 1 ~a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 1 YAYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CcchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
No 438
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=28.43 E-value=6.3e+02 Score=25.49 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 039873 357 DLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEER 435 (709)
Q Consensus 357 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (709)
.-+++.+...++-+.......-++.+.+...++-+.+++..... .|. -++ +.. +-.+.+.-++++.+. +.
T Consensus 20 fPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~--p~a----~~e--kr~~Vla~lkeLe~e-v~ 90 (432)
T KOG2758|consen 20 FPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM--PNA----LVE--KRTEVLAELKELEEE-VA 90 (432)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc--hHH----HHH--HHHHHHHHHHHHHHH-HH
Confidence 34455555556666666667777777788888888888877631 111 111 111 112233333333321 11
Q ss_pred CCHHHHHHHH---HHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHH---HHhCCCCCCH--
Q 039873 436 PNHVTFVGVL---SACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAEKF---MRSTPVKWDV-- 506 (709)
Q Consensus 436 pd~~t~~~ll---~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~---~~~~~~~pd~-- 506 (709)
| ...++ ..-.....-.+....++.+.+.+++.|+. .+.--...-...||++..|-.+ |+.....||.
T Consensus 91 p----iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ 166 (432)
T KOG2758|consen 91 P----IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNY 166 (432)
T ss_pred H----HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhh
Confidence 1 11111 11122223344567788888889999983 3444555666789999999876 4544334554
Q ss_pred --HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873 507 --VAWHTLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 507 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
..|+-|.+-.. .-+++.|.+-+.++.+
T Consensus 167 lsalwGKlASEIL-~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 167 LSALWGKLASEIL-TQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 45655554332 3467888877777665
No 439
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.17 E-value=6e+02 Score=25.16 Aligned_cols=137 Identities=8% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873 409 MICGYSHHGLGREALTLFQNMLAAEERPN-------HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV 481 (709)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 481 (709)
+..-..+.+++++|+..+.+....|+..| ..|...+..-|...|+...-.+....... .+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------~m 75 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------AM 75 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------HH
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873 482 GLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
.-+.+..-..-.+.+|+..+..||..--...+..-...--..+-...++..++.. ++.+|.+.|++.+|..
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~K---------li~l~y~~~~Ysdala 146 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECK---------LIYLLYKTGKYSDALA 146 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhcccHHHHHH
Q ss_pred HHHHHH
Q 039873 562 IRKLMK 567 (709)
Q Consensus 562 ~~~~m~ 567 (709)
+.....
T Consensus 147 lIn~ll 152 (421)
T COG5159 147 LINPLL 152 (421)
T ss_pred HHHHHH
No 440
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=27.53 E-value=67 Score=24.61 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhCCcccCCccc
Q 039873 600 SQIYEKVRELSAKIKPLGYVPDVAAV 625 (709)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~pd~~~~ 625 (709)
.++.+.+++...+++..|+.||...+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45677888889999999999997655
No 441
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.43 E-value=8.2e+02 Score=26.52 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=22.6
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCccchH
Q 039873 313 FQNEYFEEALNLFCGMEYEAIRPNEFTFA 341 (709)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 341 (709)
...++.++|+.++.+|...|..|..+.-.
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~ 282 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQ 282 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 46688999999999999888777665433
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.87 E-value=1.1e+03 Score=27.64 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=26.8
Q ss_pred cCCCcHHHHHHHHHHHHc----CCCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873 248 SLKDLKLGLQVHSQMLKS----DIEPDVFINSAMISMYGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 298 (709)
..|+++.+..+-+..... -..+....+..+..+..-.|++++|..+..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 345555555555444432 223444555555566666666666666554443
No 443
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.77 E-value=2.6e+02 Score=21.80 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHH
Q 039873 257 QVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEA 321 (709)
Q Consensus 257 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 321 (709)
.++..+.+.|+-. ....-...+...+.+.|.++++.++.++..+|.+...++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4556666665322 222222334455678888888888888888888888888777765443
No 444
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=3.9e+02 Score=25.81 Aligned_cols=53 Identities=13% Similarity=-0.033 Sum_probs=44.7
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 516 SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 516 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+...|++-++++-...++...|.|..+|..-+.+.+..=+.++|..-|....+
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34578888899999999999999999999988888888888888888877765
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.39 E-value=3.1e+02 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 039873 205 NSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGL 245 (709)
Q Consensus 205 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 245 (709)
..++..+.+.+..-.|.++++++.+.+...+..|.-..|..
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~ 64 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKL 64 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 34445555555555555555555555444444443333333
No 446
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.08 E-value=2.7e+02 Score=25.21 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 039873 204 YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLK 250 (709)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 250 (709)
-.+++..+...+..-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444455445555566666666666655555555444444444444
No 447
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.82 E-value=6e+02 Score=24.43 Aligned_cols=162 Identities=9% Similarity=0.008 Sum_probs=75.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 039873 409 MICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACG-HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA 487 (709)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 487 (709)
++...-+.|+++++.+.++++...+...+..--+.+-.||- ..|....+++++.....+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45566777888888888888888765555444444444442 123344455555544332222211 1222222222110
Q ss_pred ------CCHHHHHHHHHhCCC----CCC-HHHHHHHHH-HH----------HhcCCchHHHHHHHHHHh-----cCCCCc
Q 039873 488 ------GLLDEAEKFMRSTPV----KWD-VVAWHTLLN-AS----------RVHQNYGFGRRIAEYILH-----MDPNDV 540 (709)
Q Consensus 488 ------g~~~~A~~~~~~~~~----~pd-~~~~~~ll~-~~----------~~~g~~~~a~~~~~~~~~-----~~p~~~ 540 (709)
.--.+...+++..-+ .+. .+.|.-+-+ -| .+..-.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 111233344443210 111 111111111 11 111123667777777654 456665
Q ss_pred hhHHHHHH----HhhhcCCchhHHHHHHHHHhCCC
Q 039873 541 GTYILLSN----MYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 541 ~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
.-.-..+| .|.-.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 43332222 34568999999999888876543
No 448
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=25.12 E-value=1.1e+03 Score=27.24 Aligned_cols=107 Identities=9% Similarity=0.056 Sum_probs=57.7
Q ss_pred CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHhc---cCC-CHhh
Q 039873 231 SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE--PDVFINSAMISMYGKCGKFSNAKKVFEGL---ETR-NVVL 304 (709)
Q Consensus 231 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~-~~~~ 304 (709)
++..+......+...+ .|+...+..+++.+...... .+... =..+.+.+.+.+. ..+ ....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4555666666666543 68888888887776542110 00000 0112233333221 111 1122
Q ss_pred HHHHHHHH---HHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC
Q 039873 305 WTAMVAAC---FQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS 351 (709)
Q Consensus 305 ~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 351 (709)
|+ .|+++ ++.++++.|+..+.+|.+.|..|....-..++.+.-..|
T Consensus 259 yd-~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 259 FD-TISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 22 33333 456899999999999999998887665555555554444
No 449
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=24.85 E-value=6.7e+02 Score=24.58 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCC-----ChhhHHHHHHHHhc
Q 039873 175 ALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGS-VRW-----DSVTYVNAFGLSAS 248 (709)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-----~~~t~~~ll~~~~~ 248 (709)
.++-.+.|.=+...-..+|+....| ..|..-+.+.|+.+.|-.++--+...+ ... +...-..++.....
T Consensus 158 ~Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 158 EIVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 3344444544555555666655322 356667777777777777666664332 111 12233455556666
Q ss_pred CCCcHHHHHHHHHHHHc
Q 039873 249 LKDLKLGLQVHSQMLKS 265 (709)
Q Consensus 249 ~~~~~~a~~~~~~~~~~ 265 (709)
.++++.+.++.+.+...
T Consensus 233 ~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKAL 249 (258)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 66777776666666544
No 450
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.59 E-value=3.9e+02 Score=21.85 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=14.6
Q ss_pred HHHHHHHhCCCccHHHHHHHHHH
Q 039873 206 SVLNGLIENECFRGGVEVLGKMV 228 (709)
Q Consensus 206 ~li~~~~~~g~~~~A~~l~~~m~ 228 (709)
.++..|...+++++|.+.+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 35556666666777766666654
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.54 E-value=7.6e+02 Score=27.66 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=16.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHh
Q 039873 342 VMLNSAAGLSALRHGDLLHAHIEKS 366 (709)
Q Consensus 342 ~ll~~~~~~~~~~~a~~i~~~~~~~ 366 (709)
+++.+|...|++..+.++++..+..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~ 57 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH 57 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC
Confidence 5666677667666666666666543
No 452
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.27 E-value=3.8e+02 Score=29.82 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCChH------HHHHHHHhcc-CCCHhhHHHHHHH
Q 039873 241 NAFGLSASLKDLKLGLQVHSQMLKSD--IEPDVFINSAMISMYGKCGKFS------NAKKVFEGLE-TRNVVLWTAMVAA 311 (709)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~------~A~~~~~~m~-~~~~~~~~~li~~ 311 (709)
+++.+|...|++..+.++++...... -..-...+|..|+-..+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78888888888888888888777643 2222345666666666666543 2333333322 2344555555544
Q ss_pred H
Q 039873 312 C 312 (709)
Q Consensus 312 ~ 312 (709)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.13 E-value=5.9e+02 Score=23.75 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHH
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIV 481 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 481 (709)
+...+.++..+...|+++.|-+.|.-+.+.. ..|..+ .+.-|.+++... +-.... ..++-|+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~----~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRR----GEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcC----CCcchHHHHHHHHH
Confidence 4567788889999999999999999998753 445432 233444443321 222222 4555566
Q ss_pred HHHHhcCCHHHHHHH------HHhCC--CCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 482 GLLSKAGLLDEAEKF------MRSTP--VKWD---VVAWHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~------~~~~~--~~pd---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
..|.......+.... |+.-. ..|. ...|..|+..-.+....+.+.++.+++.++
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~El 168 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDEL 168 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 666544333332222 21110 1122 223444554443444556677888887774
No 454
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.04 E-value=7.4e+02 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=13.4
Q ss_pred hHHHHHHHHhc-c-CCCHhhHHHHHHH
Q 039873 287 FSNAKKVFEGL-E-TRNVVLWTAMVAA 311 (709)
Q Consensus 287 ~~~A~~~~~~m-~-~~~~~~~~~li~~ 311 (709)
++.+.++...+ . +.+...|..++..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~ 82 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSN 82 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 45566666666 2 3566666665544
No 455
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.80 E-value=1.2e+03 Score=27.37 Aligned_cols=131 Identities=8% Similarity=0.034 Sum_probs=66.8
Q ss_pred cHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873 203 EYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG 282 (709)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 282 (709)
-|..|+.-|...|..++|++++.+....--.-|.. ..+.-..+.+.+.+.+ .++..+.-...+. .
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~-~~~~~Li~~y~~w-v 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLG-AENLDLILEYADW-V 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhc-ccchhHHHHHhhh-h
Confidence 48889999999999999999999987632101110 0111122334444443 2222111111111 1
Q ss_pred hcCChHHHHHHHHhccCCCHhhHH-HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHh
Q 039873 283 KCGKFSNAKKVFEGLETRNVVLWT-AMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAA 348 (709)
Q Consensus 283 ~~g~~~~A~~~~~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 348 (709)
-..+.+.+.++|..-......+.+ .-+-.|......+-++..++.+....-.++..-.+.++.-|+
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 123455566666551110111111 123345666777778888888776655556555566655554
No 456
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=6e+02 Score=25.85 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHHHHhC---CCCCChhhHH--HHHHHHhcCCCcHHHHHHHHHHHH
Q 039873 214 NECFRGGVEVLGKMVSG---SVRWDSVTYV--NAFGLSASLKDLKLGLQVHSQMLK 264 (709)
Q Consensus 214 ~g~~~~A~~l~~~m~~~---g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~ 264 (709)
.++.++|++.++++.+. --.||.+.|. ...+.+...|++..+++++....+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666665432 1233444332 222233344555555555544443
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.29 E-value=2.3e+02 Score=25.62 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=32.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 039873 429 MLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE 492 (709)
Q Consensus 429 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (709)
+...|+++...-. .++.........-.|.++++.+.+. +...+..+.-.-++.+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455665554433 2333333334455677777776553 444444443344566777776653
No 458
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=23.26 E-value=3.7e+02 Score=28.93 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD 536 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 536 (709)
+..|-..+.-|...+++++|.++.+-.+ +...|.+|......+.+...++.++..+.+++
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~id 632 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQID 632 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchh
Confidence 3345666667778888888888876653 56778888777777777777777777666653
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.96 E-value=2.8e+02 Score=26.87 Aligned_cols=18 Identities=6% Similarity=-0.210 Sum_probs=8.4
Q ss_pred HHHHhCCCccHHHHHHHH
Q 039873 209 NGLIENECFRGGVEVLGK 226 (709)
Q Consensus 209 ~~~~~~g~~~~A~~l~~~ 226 (709)
.+|...|++.+|+.-|+.
T Consensus 18 rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 444444444444444433
No 460
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=9.1e+02 Score=25.35 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=50.7
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH---HHHH----HHHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVA---WHTL----LNAS 516 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~---~~~l----l~~~ 516 (709)
+-..|+...-..++....+...+..| ....|+|++.|...+.++.|.++..+... |+..+ |.-. ...-
T Consensus 179 ~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrIk 257 (493)
T KOG2581|consen 179 YELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLGRIK 257 (493)
T ss_pred HHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHhhHH
Confidence 34455555555555444443333333 34567788888888888888888877642 33221 1111 1123
Q ss_pred HhcCCchHHHHHHHHHHhcCCC
Q 039873 517 RVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
+.++++..|.+.+-.++..-|+
T Consensus 258 aiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 258 AIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhcchhHHHHHHHHHHHhCcc
Confidence 4566777777777666666554
No 461
>PRK14700 recombination factor protein RarA; Provisional
Probab=22.35 E-value=4.7e+02 Score=26.16 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=36.2
Q ss_pred HHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873 305 WTAMVAACFQ---NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA 352 (709)
Q Consensus 305 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 352 (709)
+--+|+++.+ -.+.+.|+-.+.+|++.|-.|....-..++.++-..|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344666654 46889999999999999988888777777777766663
No 462
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=22.27 E-value=2.9e+02 Score=21.84 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 039873 50 KVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFL 115 (709)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 115 (709)
..+...+...|+- +. .-.-...+..-+.+.++++++.++.++..+|..+..++-..+..
T Consensus 23 ~~v~~~L~~~gvl----t~---~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 23 DELLIHLLQKDIL----TD---SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHcCCC----CH---HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3466666666543 22 22223334556788899999999999888999998888665543
No 463
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.24 E-value=1.1e+03 Score=26.18 Aligned_cols=222 Identities=11% Similarity=0.012 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHhCC-----CccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCCcHHHHHHHHHHHHcCCCCchHHH
Q 039873 201 VFEYNSVLNGLIENE-----CFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS-LKDLKLGLQVHSQMLKSDIEPDVFIN 274 (709)
Q Consensus 201 ~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~ 274 (709)
..+.+.+-..|.+.. +.+.|+.+|.+..+.|. |+...+...+.-... ..+...|.+++....+.|.. +. .
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~ 363 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--I 363 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--H
Confidence 344555555555533 34557777766665543 344433333333222 24566777777777777632 22 2
Q ss_pred HHHHHHHH----hcCChHHHHHHHHhccCCCHhh-HHHH--HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHH
Q 039873 275 SAMISMYG----KCGKFSNAKKVFEGLETRNVVL-WTAM--VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSA 347 (709)
Q Consensus 275 ~~li~~y~----~~g~~~~A~~~~~~m~~~~~~~-~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 347 (709)
-.+..+|. -..+.+.|...+.+..+++... .-.+ +..+.. +.++.+.-.+..+.+.|..--...-..++...
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 22222222 2235667777777766655211 1111 122222 55666666655555544321111111111111
Q ss_pred ----hc---cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHHHH--
Q 039873 348 ----AG---LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG----GNIEAANKVFSDMRYRDIITWNAMICGYS-- 414 (709)
Q Consensus 348 ----~~---~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~~~~~~~~~~~~li~~~~-- 414 (709)
.. ..+.+.+...+......| +......|-+.|... .+.+.|...+......+ +-...-.+|.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e 517 (552)
T KOG1550|consen 443 EEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHE 517 (552)
T ss_pred cccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHh
Confidence 00 123444555555554443 444555555555543 24667777776665444 1111112222
Q ss_pred ----HcCChHHHHHHHHHHHHCC
Q 039873 415 ----HHGLGREALTLFQNMLAAE 433 (709)
Q Consensus 415 ----~~g~~~~A~~~~~~m~~~g 433 (709)
-.. ...|.+++++..+.+
T Consensus 518 ~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 518 HGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cCcCcch-hHHHHHHHHHHHhcC
Confidence 223 577888888877654
No 464
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.16 E-value=3.5e+02 Score=20.43 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 039873 387 NIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH 463 (709)
Q Consensus 387 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 463 (709)
+.+.|..++..+. ++.+..||++...+.+|+- .-..+.||..+.. .+..|.+-|.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG----------~L~~aL~ey~~ 70 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILG----------ELAAALEEYKK 70 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHH----------HHHHHHHHHHH
Confidence 4566777777776 4577788888887777652 2223678776553 34445555555
Q ss_pred HH
Q 039873 464 LM 465 (709)
Q Consensus 464 ~~ 465 (709)
+.
T Consensus 71 ~~ 72 (82)
T PF11123_consen 71 MV 72 (82)
T ss_pred Hc
Confidence 53
No 465
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.84 E-value=3.2e+02 Score=23.25 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhc--CCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873 524 FGRRIAEYILHM--DPNDVGTYILLSNMYAKEKRWDGVSKIRK 564 (709)
Q Consensus 524 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 564 (709)
...++|..|... +..-+..|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 366777777653 45566778888889999999999998886
No 466
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=21.76 E-value=26 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=16.9
Q ss_pred ceEEEecCCcccccccccccCC
Q 039873 685 RDIIVRDTNRFHRFQDGCCSCT 706 (709)
Q Consensus 685 ~~i~~~d~~~~h~f~~g~csc~ 706 (709)
..|=+.|.+..|+|+|||-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 3566789999999999997643
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.66 E-value=4.1e+02 Score=24.43 Aligned_cols=73 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCH----------HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873 490 LDEAEKFMRSTPVKWDV----------VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 490 ~~~A~~~~~~~~~~pd~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 559 (709)
++.|+.+++.+.-+-+. ..--..+..|.+.|.+++|.+++++..+ +|++...-.-|..+-.+...+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Q ss_pred HHHH
Q 039873 560 SKIR 563 (709)
Q Consensus 560 ~~~~ 563 (709)
.+-|
T Consensus 164 lqnF 167 (200)
T cd00280 164 LQNF 167 (200)
T ss_pred HHhc
No 468
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.56 E-value=1.2e+03 Score=27.39 Aligned_cols=142 Identities=14% Similarity=0.068 Sum_probs=70.9
Q ss_pred hcCCCcHHHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHH
Q 039873 247 ASLKDLKLGLQVHSQMLKSDIEPDVFI--NSAMISMYGKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEA 321 (709)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 321 (709)
+..|+.+ +.+.+++.|..++... ..+.+...+..|..+-+.-+++.-... |..-++.+..+ +..|+.+-+
T Consensus 533 a~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A-~~~g~~~iv 607 (823)
T PLN03192 533 ASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA-ISAKHHKIF 607 (823)
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH-HHhCCHHHH
Confidence 3456654 3344445565554322 233444555667766665555532222 22223333332 344444333
Q ss_pred HHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChh--HHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873 322 LNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLI--VGNALINMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 322 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~ 399 (709)
.-++ +.+...+..+-...+...+..|+.+.++.+ ++.|..++.. -..+-+..-++.|+.+-+.-+++.-.
T Consensus 608 ~~L~----~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~L----l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 608 RILY----HFASISDPHAAGDLLCTAAKRNDLTAMKEL----LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred HHHH----hcCcccCcccCchHHHHHHHhCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 3222 233233333444566677777877655544 4556555432 12334455567888888888877654
Q ss_pred CC
Q 039873 400 YR 401 (709)
Q Consensus 400 ~~ 401 (709)
+.
T Consensus 680 dv 681 (823)
T PLN03192 680 DV 681 (823)
T ss_pred CC
Confidence 43
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.47 E-value=3.9e+02 Score=23.38 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873 427 QNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL 490 (709)
Q Consensus 427 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 490 (709)
+.+.+.|+++...-. .++......+..-.|.++++.+.+. +..-+..+.-.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 334445544443221 2333334444445556666665442 3222222222223555555554
No 470
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.88 E-value=1.1e+03 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=13.9
Q ss_pred hCCCccHHHHHHHHHHhCCCCCCh
Q 039873 213 ENECFRGGVEVLGKMVSGSVRWDS 236 (709)
Q Consensus 213 ~~g~~~~A~~l~~~m~~~g~~p~~ 236 (709)
..+++++|+.++.+|...|..|..
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~ 278 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEV 278 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 345666666666666665555443
No 471
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=20.77 E-value=2.8e+02 Score=22.75 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=44.4
Q ss_pred hhcccCHHHHHHhccccCCCCCcEEEEeccccccchhHHHHHHhhhcCceEEEecCC
Q 039873 637 YLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTN 693 (709)
Q Consensus 637 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~~~d~~ 693 (709)
.|..|.|.-++--=-.+..+|..+.|.--++-|..|.-+|.-.+.-.+-.|+-++.+
T Consensus 46 slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 46 SLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 356788866554333444568888888899999999999999999999888877744
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.66 E-value=5.3e+02 Score=21.87 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHH-------HHHhCC-CCCC-HHHHHHHHH----HHHhcCCchHHHHHHHHHHh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEK-------FMRSTP-VKWD-VVAWHTLLN----ASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~-------~~~~~~-~~pd-~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~ 534 (709)
..+..|..++.+.|++++++. +|++-+ +..| ...|-+.+- ++...|..++|...|++.-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345566677777777776554 355432 3334 555654442 55667888888888876554
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.53 E-value=5.3e+02 Score=21.87 Aligned_cols=42 Identities=5% Similarity=-0.007 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHH
Q 039873 421 EALTLFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
.+.++|+.|..+|+--.. .-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554443332 233333333444444444444443
No 474
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.26 E-value=1.4e+02 Score=24.58 Aligned_cols=83 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 039873 205 NSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS-LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK 283 (709)
Q Consensus 205 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 283 (709)
..++..|...|+.++|...+.++... -.-....+..+-.+.-+ ...-+..-.++..+.+.+.-+......++-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred cCChH
Q 039873 284 CGKFS 288 (709)
Q Consensus 284 ~g~~~ 288 (709)
..++.
T Consensus 85 l~Dl~ 89 (113)
T PF02847_consen 85 LEDLE 89 (113)
T ss_dssp HHHHH
T ss_pred hhhcc
Done!