Query 039873
Match_columns 709
No_of_seqs 853 out of 4814
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-42 1E-46 386.5 40.2 482 76-569 61-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-39 9.6E-44 362.4 29.6 479 66-552 82-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.4E-32 257.3 22.5 182 304-486 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 9E-28 3.1E-32 258.4 18.1 212 219-452 8-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.1E-24 7.2E-29 227.7 39.4 369 143-555 7-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-23 5.4E-28 220.9 42.0 351 208-568 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 9.6E-22 3.3E-26 215.3 32.4 437 102-546 9-489 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.9E-21 2.4E-25 204.8 35.9 338 200-565 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.2E-20 4E-25 206.6 34.9 393 170-569 6-478 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 2E-19 6.7E-24 193.4 33.5 363 169-558 25-443 (450)
11 3fp2_A TPR repeat-containing p 99.9 7.7E-20 2.6E-24 201.4 31.0 353 100-466 26-406 (537)
12 3fp2_A TPR repeat-containing p 99.8 6.9E-18 2.4E-22 185.8 33.3 352 31-398 26-404 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 8E-17 2.7E-21 166.9 32.4 324 201-552 3-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.2E-16 4.2E-21 165.5 33.5 305 236-569 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 4.7E-18 1.6E-22 174.1 22.1 343 182-563 15-366 (449)
16 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.2E-22 169.8 23.1 284 79-395 14-305 (449)
17 3hym_B Cell division cycle pro 99.8 1.6E-16 5.3E-21 162.7 28.5 286 268-556 19-321 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 5.4E-14 1.9E-18 160.0 48.6 469 33-564 842-1340(1630)
19 2xm6_A Protein corresponding t 99.7 9E-15 3.1E-19 158.8 40.0 365 169-552 38-452 (490)
20 2ooe_A Cleavage stimulation fa 99.7 6.9E-15 2.4E-19 161.5 38.6 209 355-569 256-492 (530)
21 3hym_B Cell division cycle pro 99.7 1.1E-15 3.7E-20 156.4 28.2 264 300-568 20-298 (330)
22 1fch_A Peroxisomal targeting s 99.7 4.2E-16 1.4E-20 162.4 22.9 277 284-566 38-356 (368)
23 1fch_A Peroxisomal targeting s 99.7 1.3E-15 4.3E-20 158.8 26.4 295 213-532 37-356 (368)
24 1xi4_A Clathrin heavy chain; a 99.7 7.7E-13 2.6E-17 150.7 49.7 379 67-496 984-1377(1630)
25 2ooe_A Cleavage stimulation fa 99.7 3.9E-14 1.3E-18 155.4 37.0 405 98-538 12-495 (530)
26 2xm6_A Protein corresponding t 99.7 1.2E-13 4.2E-18 149.9 40.5 352 199-571 37-434 (490)
27 4eqf_A PEX5-related protein; a 99.7 7.5E-16 2.6E-20 160.5 19.6 261 301-565 64-352 (365)
28 3mkr_A Coatomer subunit epsilo 99.7 2.2E-14 7.7E-19 143.7 28.8 268 281-562 9-287 (291)
29 4g1t_A Interferon-induced prot 99.7 3.5E-14 1.2E-18 153.4 30.5 328 237-580 95-470 (472)
30 4eqf_A PEX5-related protein; a 99.7 9.7E-15 3.3E-19 152.0 24.6 231 336-569 64-310 (365)
31 3spa_A Mtrpol, DNA-directed RN 99.7 8.5E-17 2.9E-21 177.3 9.2 163 267-429 123-307 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1E-16 3.5E-21 176.7 9.2 130 368-498 123-260 (1134)
33 3cv0_A Peroxisome targeting si 99.6 6.9E-15 2.4E-19 150.2 20.6 256 273-567 23-313 (327)
34 3cv0_A Peroxisome targeting si 99.6 1.4E-13 4.8E-18 140.4 27.8 225 270-498 54-310 (327)
35 3mkr_A Coatomer subunit epsilo 99.6 3.9E-13 1.3E-17 134.6 28.6 248 180-439 9-269 (291)
36 4g1t_A Interferon-induced prot 99.6 4.9E-13 1.7E-17 144.3 29.8 382 132-546 48-470 (472)
37 3uq3_A Heat shock protein STI1 99.5 6.6E-13 2.3E-17 130.2 22.0 219 303-569 6-236 (258)
38 2pl2_A Hypothetical conserved 99.5 7.2E-13 2.5E-17 126.6 20.6 194 369-567 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.5 9.7E-13 3.3E-17 129.0 19.9 236 271-548 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-12 4E-17 129.9 20.6 240 315-563 18-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.5 4.7E-12 1.6E-16 135.4 24.4 372 143-568 11-420 (452)
42 3u4t_A TPR repeat-containing p 99.5 4.6E-12 1.6E-16 125.5 21.5 251 273-554 5-269 (272)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.2E-11 4.2E-16 122.5 21.3 239 213-461 17-269 (275)
44 2ho1_A Type 4 fimbrial biogene 99.4 1.4E-11 4.7E-16 120.5 21.0 196 372-569 37-238 (252)
45 1ouv_A Conserved hypothetical 99.4 9.2E-11 3.2E-15 116.3 26.6 224 302-538 6-254 (273)
46 2vq2_A PILW, putative fimbrial 99.4 2.5E-11 8.4E-16 116.1 21.3 196 371-568 7-210 (225)
47 2h6f_A Protein farnesyltransfe 99.4 1.3E-11 4.3E-16 128.0 20.3 242 303-552 98-365 (382)
48 3u4t_A TPR repeat-containing p 99.4 5.1E-11 1.8E-15 117.8 24.1 227 236-466 3-249 (272)
49 2q7f_A YRRB protein; TPR, prot 99.4 1.1E-11 3.6E-16 120.4 18.6 170 375-547 60-234 (243)
50 2ho1_A Type 4 fimbrial biogene 99.4 6.7E-11 2.3E-15 115.6 24.4 204 302-543 37-246 (252)
51 1ouv_A Conserved hypothetical 99.4 1.2E-10 4.2E-15 115.4 26.4 223 337-571 6-253 (273)
52 2q7f_A YRRB protein; TPR, prot 99.4 1.1E-11 3.7E-16 120.3 18.2 197 370-569 21-222 (243)
53 3e4b_A ALGK; tetratricopeptide 99.4 1.8E-11 6.1E-16 130.9 21.0 344 206-571 8-389 (452)
54 2pl2_A Hypothetical conserved 99.4 3.1E-11 1.1E-15 115.1 19.3 191 269-499 3-210 (217)
55 2vq2_A PILW, putative fimbrial 99.4 1E-10 3.4E-15 111.8 22.4 208 301-546 7-222 (225)
56 3sf4_A G-protein-signaling mod 99.3 2.5E-11 8.7E-16 127.7 19.3 268 270-568 8-335 (406)
57 4a1s_A PINS, partner of inscut 99.3 1E-11 3.6E-16 131.2 15.5 265 273-568 50-371 (411)
58 3vtx_A MAMA; tetratricopeptide 99.3 5.9E-11 2E-15 109.8 18.6 164 402-569 4-170 (184)
59 3ro2_A PINS homolog, G-protein 99.3 5.2E-11 1.8E-15 121.4 19.2 198 372-569 83-332 (338)
60 4abn_A Tetratricopeptide repea 99.3 1.8E-11 6.1E-16 131.7 16.4 208 354-566 85-318 (474)
61 2h6f_A Protein farnesyltransfe 99.3 6.4E-11 2.2E-15 122.7 19.7 224 339-568 99-347 (382)
62 4e6h_A MRNA 3'-END-processing 99.3 1.4E-08 4.8E-13 112.4 38.5 424 97-550 64-584 (679)
63 4e6h_A MRNA 3'-END-processing 99.3 9.6E-09 3.3E-13 113.6 35.8 412 67-484 65-584 (679)
64 3sf4_A G-protein-signaling mod 99.3 1.6E-10 5.6E-15 121.5 20.3 153 405-557 189-364 (406)
65 3ro2_A PINS homolog, G-protein 99.3 1.1E-10 3.6E-15 119.1 18.3 133 405-537 185-334 (338)
66 4a1s_A PINS, partner of inscut 99.3 8.4E-11 2.9E-15 124.2 18.0 133 405-537 225-374 (411)
67 3vtx_A MAMA; tetratricopeptide 99.2 2.9E-10 9.8E-15 105.1 17.0 168 370-540 3-175 (184)
68 4gyw_A UDP-N-acetylglucosamine 99.2 1.8E-10 6.3E-15 128.9 18.3 161 403-568 9-173 (723)
69 3ulq_A Response regulator aspa 99.2 5.1E-10 1.7E-14 117.0 19.9 158 308-465 109-291 (383)
70 3nf1_A KLC 1, kinesin light ch 99.2 5E-11 1.7E-15 120.3 11.2 236 302-568 27-306 (311)
71 2ond_A Cleavage stimulation fa 99.2 4.4E-09 1.5E-13 106.1 25.4 184 354-540 81-275 (308)
72 3nf1_A KLC 1, kinesin light ch 99.2 9.8E-11 3.4E-15 118.1 11.7 239 269-538 25-310 (311)
73 2ond_A Cleavage stimulation fa 99.1 6.1E-09 2.1E-13 105.1 23.8 163 304-469 101-272 (308)
74 3ulq_A Response regulator aspa 99.1 7.3E-10 2.5E-14 115.8 17.1 225 343-568 109-367 (383)
75 3as5_A MAMA; tetratricopeptide 99.1 1.6E-09 5.3E-14 99.7 17.4 158 374-568 10-172 (186)
76 4i17_A Hypothetical protein; T 99.1 4.7E-09 1.6E-13 100.7 20.0 203 336-550 6-224 (228)
77 1hz4_A MALT regulatory protein 99.1 4.2E-08 1.5E-12 101.8 28.1 194 375-568 96-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.1 5.9E-09 2E-13 95.8 18.3 167 338-540 9-178 (186)
79 3q15_A PSP28, response regulat 99.1 3.4E-08 1.2E-12 102.8 26.1 56 309-364 108-168 (378)
80 3q15_A PSP28, response regulat 99.1 4.4E-09 1.5E-13 109.6 18.8 300 268-568 7-364 (378)
81 4abn_A Tetratricopeptide repea 99.0 4.5E-09 1.5E-13 112.9 18.8 200 269-500 100-318 (474)
82 4i17_A Hypothetical protein; T 99.0 6.9E-09 2.4E-13 99.5 16.9 191 370-569 5-209 (228)
83 1hz4_A MALT regulatory protein 99.0 1.4E-07 4.8E-12 97.9 26.5 221 210-430 23-280 (373)
84 3edt_B KLC 2, kinesin light ch 99.0 8.4E-09 2.9E-13 102.0 15.1 221 348-568 12-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 98.9 5.7E-09 2E-13 116.8 14.8 163 370-537 7-176 (723)
86 1qqe_A Vesicular transport pro 98.9 3E-08 1E-12 99.1 16.9 164 374-539 79-273 (292)
87 1qqe_A Vesicular transport pro 98.9 2.3E-08 7.8E-13 100.0 14.1 200 352-566 32-266 (292)
88 3qky_A Outer membrane assembly 98.8 1.9E-07 6.6E-12 91.4 20.4 183 370-569 13-224 (261)
89 3edt_B KLC 2, kinesin light ch 98.8 8.6E-08 2.9E-12 94.6 17.5 206 302-535 43-281 (283)
90 3qky_A Outer membrane assembly 98.8 1.5E-07 5.3E-12 92.1 17.8 199 337-557 15-249 (261)
91 2fo7_A Synthetic consensus TPR 98.8 2.5E-07 8.7E-12 79.4 16.8 129 405-568 3-131 (136)
92 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.4E-07 1.2E-11 87.4 18.7 181 372-571 4-215 (225)
93 4ga2_A E3 SUMO-protein ligase 98.8 1.6E-08 5.3E-13 89.8 8.2 136 416-555 10-149 (150)
94 2pzi_A Probable serine/threoni 98.7 4.8E-08 1.6E-12 109.9 12.8 167 383-555 402-583 (681)
95 2uy1_A Cleavage stimulation fa 98.7 6.8E-06 2.3E-10 88.1 28.4 201 320-533 197-411 (493)
96 3mv2_B Coatomer subunit epsilo 98.7 2.4E-06 8.1E-11 83.9 22.5 78 489-568 193-281 (310)
97 3mv2_B Coatomer subunit epsilo 98.7 1.5E-06 5.1E-11 85.4 20.8 238 283-542 25-289 (310)
98 3qou_A Protein YBBN; thioredox 98.7 3.5E-07 1.2E-11 91.0 16.6 174 389-567 103-282 (287)
99 2fo7_A Synthetic consensus TPR 98.6 4.9E-07 1.7E-11 77.6 14.2 125 305-431 4-131 (136)
100 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-06 5.9E-11 81.6 19.0 172 391-571 5-199 (212)
101 2ifu_A Gamma-SNAP; membrane fu 98.6 6.7E-07 2.3E-11 89.9 16.1 219 315-561 4-253 (307)
102 2pzi_A Probable serine/threoni 98.6 1.3E-06 4.4E-11 98.2 19.5 189 348-542 402-609 (681)
103 2uy1_A Cleavage stimulation fa 98.6 3.8E-05 1.3E-09 82.3 29.7 338 82-431 28-412 (493)
104 2vsy_A XCC0866; transferase, g 98.6 4.4E-07 1.5E-11 100.0 14.8 159 385-547 2-169 (568)
105 4ga2_A E3 SUMO-protein ligase 98.6 1E-07 3.4E-12 84.5 7.5 121 445-568 4-128 (150)
106 2r5s_A Uncharacterized protein 98.6 4.5E-07 1.6E-11 82.7 12.1 157 375-568 9-172 (176)
107 2vsy_A XCC0866; transferase, g 98.5 9.1E-07 3.1E-11 97.5 16.2 146 350-500 2-154 (568)
108 3gyz_A Chaperone protein IPGC; 98.5 4E-07 1.4E-11 80.4 10.3 101 469-569 30-133 (151)
109 3qou_A Protein YBBN; thioredox 98.5 3.3E-06 1.1E-10 83.8 17.1 124 372-497 151-278 (287)
110 3urz_A Uncharacterized protein 98.5 2.1E-06 7.3E-11 80.7 14.7 153 381-539 13-190 (208)
111 2ifu_A Gamma-SNAP; membrane fu 98.5 4.9E-07 1.7E-11 90.9 10.9 196 350-567 4-222 (307)
112 2r5s_A Uncharacterized protein 98.5 2.7E-06 9.1E-11 77.5 14.5 157 339-498 8-168 (176)
113 4gco_A Protein STI-1; structur 98.5 1.4E-06 4.8E-11 74.4 11.8 108 440-549 15-124 (126)
114 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.8E-06 1.3E-10 80.0 16.2 182 339-541 6-219 (225)
115 3u3w_A Transcriptional activat 98.5 1.7E-05 5.8E-10 78.9 21.6 161 408-568 80-265 (293)
116 2qfc_A PLCR protein; TPR, HTH, 98.4 5.6E-06 1.9E-10 82.5 17.3 165 404-568 76-265 (293)
117 3urz_A Uncharacterized protein 98.4 5.2E-06 1.8E-10 78.0 16.1 134 376-514 58-198 (208)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.4 5.2E-06 1.8E-10 78.1 16.0 97 473-569 36-150 (213)
119 3dra_A Protein farnesyltransfe 98.4 3E-05 1E-09 76.8 21.5 63 505-567 219-285 (306)
120 2c2l_A CHIP, carboxy terminus 98.4 9.9E-07 3.4E-11 87.4 10.7 192 371-569 3-199 (281)
121 3dra_A Protein farnesyltransfe 98.4 9.2E-05 3.2E-09 73.3 24.8 160 386-548 124-301 (306)
122 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.8E-11 75.8 11.5 96 474-569 21-118 (148)
123 4gco_A Protein STI-1; structur 98.4 1.7E-06 5.8E-11 73.9 10.7 99 470-568 8-109 (126)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.3E-05 4.3E-10 75.4 16.7 144 376-539 10-154 (213)
125 2xcb_A PCRH, regulatory protei 98.4 3.5E-06 1.2E-10 73.6 11.9 95 475-569 19-115 (142)
126 3rjv_A Putative SEL1 repeat pr 98.3 2.3E-05 7.9E-10 73.7 18.4 110 352-466 68-196 (212)
127 3u3w_A Transcriptional activat 98.3 5.6E-05 1.9E-09 75.1 21.3 93 374-466 157-265 (293)
128 1na0_A Designed protein CTPR3; 98.3 8.3E-06 2.8E-10 68.6 13.2 113 440-554 11-125 (125)
129 1p5q_A FKBP52, FK506-binding p 98.3 4.1E-06 1.4E-10 85.2 13.1 159 387-567 128-292 (336)
130 1a17_A Serine/threonine protei 98.3 1E-05 3.5E-10 72.3 14.1 125 442-568 17-145 (166)
131 2vyi_A SGTA protein; chaperone 98.3 1.2E-05 4.2E-10 68.3 13.2 116 440-557 14-131 (131)
132 2lni_A Stress-induced-phosphop 98.2 1.2E-05 4E-10 68.7 12.0 118 402-555 15-133 (133)
133 4f3v_A ESX-1 secretion system 98.2 3.6E-06 1.2E-10 81.5 9.5 133 407-546 106-247 (282)
134 4f3v_A ESX-1 secretion system 98.2 4.2E-06 1.4E-10 81.1 9.8 181 384-569 18-237 (282)
135 2qfc_A PLCR protein; TPR, HTH, 98.2 4.5E-05 1.5E-09 75.8 17.8 163 304-496 77-259 (293)
136 2e2e_A Formate-dependent nitri 98.2 4.1E-06 1.4E-10 76.2 9.2 118 450-569 22-144 (177)
137 3upv_A Heat shock protein STI1 98.2 7.4E-06 2.5E-10 69.7 10.2 95 475-569 5-101 (126)
138 3gw4_A Uncharacterized protein 98.2 2.2E-05 7.6E-10 72.9 14.3 156 384-568 4-175 (203)
139 2fbn_A 70 kDa peptidylprolyl i 98.2 5.4E-06 1.8E-10 77.1 9.6 171 378-569 10-186 (198)
140 3gw4_A Uncharacterized protein 98.2 4.8E-05 1.6E-09 70.5 16.0 128 371-498 25-171 (203)
141 1hxi_A PEX5, peroxisome target 98.2 5.9E-06 2E-10 69.8 8.5 94 476-569 19-114 (121)
142 1a17_A Serine/threonine protei 98.1 3.3E-05 1.1E-09 69.0 13.9 127 405-534 15-145 (166)
143 2kck_A TPR repeat; tetratricop 98.1 1.4E-05 4.9E-10 65.7 10.5 97 474-570 6-107 (112)
144 3q49_B STIP1 homology and U bo 98.1 1.7E-05 5.7E-10 68.4 11.0 98 472-569 7-106 (137)
145 3sz7_A HSC70 cochaperone (SGT) 98.1 1.2E-05 4E-10 72.1 10.2 94 475-568 12-107 (164)
146 2lni_A Stress-induced-phosphop 98.1 2.6E-05 8.9E-10 66.5 11.1 97 473-569 15-113 (133)
147 2e2e_A Formate-dependent nitri 98.1 2.2E-05 7.5E-10 71.3 11.2 127 414-543 21-152 (177)
148 1na0_A Designed protein CTPR3; 98.1 3.1E-05 1.1E-09 65.0 11.4 96 474-569 9-106 (125)
149 3gyz_A Chaperone protein IPGC; 98.1 1.5E-05 5.2E-10 70.2 9.4 100 403-539 36-137 (151)
150 4gcn_A Protein STI-1; structur 98.1 1.3E-05 4.4E-10 68.4 8.7 93 476-568 10-111 (127)
151 1elw_A TPR1-domain of HOP; HOP 98.0 3.7E-05 1.3E-09 63.8 11.1 93 476-568 6-100 (118)
152 2dba_A Smooth muscle cell asso 98.0 5E-05 1.7E-09 66.2 12.1 94 475-568 29-127 (148)
153 2vgx_A Chaperone SYCD; alterna 98.0 3.7E-05 1.3E-09 67.5 10.8 94 372-467 21-118 (148)
154 2c2l_A CHIP, carboxy terminus 98.0 3.8E-05 1.3E-09 75.8 12.1 47 451-500 148-196 (281)
155 1elw_A TPR1-domain of HOP; HOP 98.0 0.0001 3.6E-09 60.9 13.2 104 444-549 10-115 (118)
156 2dba_A Smooth muscle cell asso 98.0 0.00011 3.7E-09 64.0 13.4 116 402-551 27-144 (148)
157 3upv_A Heat shock protein STI1 97.9 6.5E-05 2.2E-09 63.7 11.1 105 443-549 9-121 (126)
158 2hr2_A Hypothetical protein; a 97.9 3.3E-05 1.1E-09 67.5 9.1 63 506-568 57-130 (159)
159 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.5E-05 2.2E-09 79.9 13.4 161 386-568 248-414 (457)
160 3sz7_A HSC70 cochaperone (SGT) 97.9 7.7E-05 2.6E-09 66.7 11.9 106 440-547 13-120 (164)
161 1wao_1 Serine/threonine protei 97.9 8E-05 2.7E-09 79.6 14.0 120 375-498 9-134 (477)
162 3q7a_A Farnesyltransferase alp 97.9 0.00065 2.2E-08 68.0 19.5 178 388-568 105-330 (349)
163 2vyi_A SGTA protein; chaperone 97.9 7E-05 2.4E-09 63.4 10.9 96 474-569 12-109 (131)
164 3rkv_A Putative peptidylprolyl 97.9 6.6E-05 2.3E-09 67.0 11.2 63 506-568 63-125 (162)
165 2xcb_A PCRH, regulatory protei 97.9 4.6E-05 1.6E-09 66.3 9.8 103 441-545 21-125 (142)
166 4b4t_Q 26S proteasome regulato 97.9 0.00021 7E-09 75.3 16.8 164 405-568 57-244 (434)
167 3dss_A Geranylgeranyl transfer 97.9 0.002 6.8E-08 64.2 22.2 192 353-549 90-318 (331)
168 3q7a_A Farnesyltransferase alp 97.9 0.0037 1.3E-07 62.6 24.1 222 316-543 68-340 (349)
169 1p5q_A FKBP52, FK506-binding p 97.9 9E-05 3.1E-09 75.2 12.5 137 351-493 127-283 (336)
170 3k9i_A BH0479 protein; putativ 97.8 1.3E-05 4.6E-10 67.1 4.8 82 487-568 3-89 (117)
171 1wao_1 Serine/threonine protei 97.8 4.1E-05 1.4E-09 81.8 9.5 114 449-564 17-134 (477)
172 4gcn_A Protein STI-1; structur 97.8 0.00019 6.5E-09 61.0 11.6 91 406-498 11-107 (127)
173 2xev_A YBGF; tetratricopeptide 97.8 7.6E-05 2.6E-09 63.3 9.0 89 480-568 8-104 (129)
174 3q49_B STIP1 homology and U bo 97.8 0.00011 3.9E-09 63.0 10.3 99 438-538 9-109 (137)
175 1elr_A TPR2A-domain of HOP; HO 97.8 8.9E-05 3E-09 62.8 9.1 95 475-569 5-108 (131)
176 2fbn_A 70 kDa peptidylprolyl i 97.8 4.3E-05 1.5E-09 70.8 7.3 145 177-322 11-176 (198)
177 3dss_A Geranylgeranyl transfer 97.7 0.0029 9.8E-08 63.0 20.6 178 388-568 90-303 (331)
178 3ro3_A PINS homolog, G-protein 97.7 0.00022 7.6E-09 62.8 11.5 135 405-568 11-157 (164)
179 2kck_A TPR repeat; tetratricop 97.7 0.0003 1E-08 57.4 11.5 90 373-464 7-103 (112)
180 4b4t_Q 26S proteasome regulato 97.7 0.00071 2.4E-08 71.1 17.0 117 382-498 105-240 (434)
181 3n71_A Histone lysine methyltr 97.7 0.00024 8.1E-09 75.5 12.8 124 448-571 319-466 (490)
182 3ro3_A PINS homolog, G-protein 97.7 0.00027 9.3E-09 62.2 11.5 95 372-466 9-117 (164)
183 1elr_A TPR2A-domain of HOP; HO 97.7 0.00044 1.5E-08 58.3 12.1 114 404-550 5-122 (131)
184 2hr2_A Hypothetical protein; a 97.7 0.00021 7.1E-09 62.4 9.5 69 476-544 59-140 (159)
185 1ihg_A Cyclophilin 40; ppiase 97.6 0.00026 8.8E-09 72.8 11.9 137 403-561 223-362 (370)
186 1hxi_A PEX5, peroxisome target 97.6 0.00018 6.3E-09 60.5 8.9 91 447-539 26-118 (121)
187 2l6j_A TPR repeat-containing p 97.6 3E-05 1E-09 63.8 3.5 93 473-565 3-103 (111)
188 1dce_A Protein (RAB geranylger 97.6 0.0025 8.6E-08 69.3 19.7 170 385-558 42-244 (567)
189 2xev_A YBGF; tetratricopeptide 97.6 0.0009 3.1E-08 56.5 12.6 69 476-544 41-114 (129)
190 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00017 5.9E-09 73.2 9.3 147 404-570 180-329 (338)
191 3rkv_A Putative peptidylprolyl 97.6 0.00023 8E-09 63.3 8.9 120 403-547 11-139 (162)
192 3ma5_A Tetratricopeptide repea 97.5 0.00027 9.2E-09 57.0 8.3 64 505-568 6-69 (100)
193 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00016 5.4E-09 73.5 8.5 113 440-569 181-293 (338)
194 3k9i_A BH0479 protein; putativ 97.5 7.8E-05 2.7E-09 62.3 4.9 91 451-542 3-97 (117)
195 1ihg_A Cyclophilin 40; ppiase 97.4 0.00067 2.3E-08 69.6 11.6 113 438-569 223-336 (370)
196 2kat_A Uncharacterized protein 97.4 0.00035 1.2E-08 57.9 7.6 64 505-568 18-81 (115)
197 1na3_A Designed protein CTPR2; 97.4 0.00078 2.7E-08 52.7 9.0 81 474-554 9-91 (91)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0018 6E-08 68.7 13.9 64 506-569 317-380 (457)
199 1zu2_A Mitochondrial import re 97.3 0.00013 4.3E-09 63.7 3.9 64 506-569 36-120 (158)
200 3bee_A Putative YFRE protein; 97.2 0.0019 6.5E-08 51.0 9.3 68 504-571 4-74 (93)
201 2l6j_A TPR repeat-containing p 97.1 0.0012 4.1E-08 53.9 7.7 65 505-569 3-67 (111)
202 3n71_A Histone lysine methyltr 97.1 0.00076 2.6E-08 71.6 8.0 114 483-614 318-449 (490)
203 3qwp_A SET and MYND domain-con 97.1 0.0016 5.4E-08 68.0 9.8 116 481-614 294-427 (429)
204 1klx_A Cysteine rich protein B 97.0 0.0062 2.1E-07 52.3 11.1 50 519-570 74-127 (138)
205 3lvg_A Clathrin heavy chain 1; 96.9 0.00036 1.2E-08 70.9 3.1 434 66-562 52-534 (624)
206 1na3_A Designed protein CTPR2; 96.9 0.0026 9E-08 49.5 7.4 64 506-569 9-72 (91)
207 1zu2_A Mitochondrial import re 96.8 0.0012 4.3E-08 57.3 5.4 123 414-569 13-147 (158)
208 3ma5_A Tetratricopeptide repea 96.7 0.0067 2.3E-07 48.6 8.9 63 402-466 6-69 (100)
209 1dce_A Protein (RAB geranylger 96.7 0.022 7.5E-07 61.9 15.5 149 416-568 42-220 (567)
210 1klx_A Cysteine rich protein B 96.7 0.021 7.2E-07 48.8 12.4 110 215-332 9-127 (138)
211 3ly7_A Transcriptional activat 96.7 0.034 1.2E-06 55.6 15.3 47 400-448 191-243 (372)
212 2kat_A Uncharacterized protein 96.7 0.0048 1.6E-07 50.8 7.9 63 402-466 18-81 (115)
213 1wy6_A Hypothetical protein ST 96.7 0.1 3.4E-06 43.1 14.8 140 414-572 18-157 (172)
214 3qww_A SET and MYND domain-con 96.6 0.012 4E-07 61.3 11.7 92 451-542 311-423 (433)
215 3qww_A SET and MYND domain-con 96.6 0.0026 8.9E-08 66.3 6.5 83 486-568 310-410 (433)
216 3mkq_A Coatomer beta'-subunit; 96.4 0.15 5.2E-06 58.1 21.1 153 211-398 609-762 (814)
217 3qwp_A SET and MYND domain-con 96.4 0.019 6.6E-07 59.8 12.2 69 476-544 331-414 (429)
218 2kc7_A BFR218_protein; tetratr 96.3 0.0084 2.9E-07 47.6 6.7 51 517-567 11-62 (99)
219 2kc7_A BFR218_protein; tetratr 96.1 0.021 7.1E-07 45.2 8.0 79 480-566 6-87 (99)
220 3mkq_A Coatomer beta'-subunit; 95.8 0.35 1.2E-05 55.1 19.6 155 108-298 608-763 (814)
221 1pc2_A Mitochondria fission pr 95.7 0.038 1.3E-06 47.5 8.3 65 504-568 30-99 (152)
222 3ly7_A Transcriptional activat 95.5 0.15 5.1E-06 51.0 13.0 132 434-569 190-339 (372)
223 3u64_A Protein TP_0956; tetrat 95.1 0.072 2.5E-06 51.0 9.0 75 502-576 192-276 (301)
224 3mkq_B Coatomer subunit alpha; 94.9 1.5 5E-05 38.6 16.0 129 279-429 13-141 (177)
225 1pc2_A Mitochondria fission pr 94.5 0.42 1.4E-05 41.0 11.3 37 506-542 71-107 (152)
226 3mkq_B Coatomer subunit alpha; 94.3 1.6 5.5E-05 38.3 14.7 129 178-328 13-141 (177)
227 3bee_A Putative YFRE protein; 94.2 0.24 8.3E-06 38.6 8.6 76 472-548 4-84 (93)
228 2v5f_A Prolyl 4-hydroxylase su 93.9 0.37 1.3E-05 38.4 9.5 69 478-546 9-86 (104)
229 3lvg_A Clathrin heavy chain 1; 92.4 0.018 6.2E-07 58.8 -0.8 238 169-424 53-325 (624)
230 1nzn_A CGI-135 protein, fissio 91.8 0.67 2.3E-05 38.2 8.0 90 449-540 12-108 (126)
231 2v5f_A Prolyl 4-hydroxylase su 91.3 0.72 2.4E-05 36.7 7.8 64 505-568 4-74 (104)
232 1y8m_A FIS1; mitochondria, unk 91.1 4.7 0.00016 33.8 12.4 65 504-568 37-105 (144)
233 4gns_B Protein CSD3, chitin bi 90.7 1.8 6.3E-05 47.8 12.6 54 514-567 345-398 (754)
234 1wy6_A Hypothetical protein ST 90.7 6.2 0.00021 32.7 12.3 83 284-368 74-156 (172)
235 1nzn_A CGI-135 protein, fissio 89.0 5.3 0.00018 32.8 11.0 86 417-505 15-106 (126)
236 2p58_C Putative type III secre 88.8 4 0.00014 31.5 9.2 87 352-443 22-108 (116)
237 2uwj_G Type III export protein 88.6 3.8 0.00013 31.6 8.9 87 352-443 21-107 (115)
238 1qsa_A Protein (soluble lytic 87.8 34 0.0011 37.0 27.4 252 272-534 73-347 (618)
239 4b4t_P 26S proteasome regulato 86.8 27 0.00094 36.0 17.9 51 113-163 30-84 (445)
240 2qx5_A Nucleoporin NIC96; mRNA 86.0 24 0.00084 38.2 17.3 81 308-399 300-383 (661)
241 4h7y_A Dual specificity protei 85.5 8.4 0.00029 32.6 10.3 106 400-540 10-128 (161)
242 2wpv_A GET4, UPF0363 protein Y 85.5 28 0.00095 33.8 20.6 167 172-364 35-215 (312)
243 4ady_A RPN2, 26S proteasome re 84.8 58 0.002 36.9 27.4 294 205-509 343-664 (963)
244 3u64_A Protein TP_0956; tetrat 84.6 5 0.00017 38.4 9.8 60 405-466 201-268 (301)
245 4b4t_P 26S proteasome regulato 82.7 40 0.0014 34.7 16.9 308 215-570 30-387 (445)
246 3ffl_A Anaphase-promoting comp 82.4 7.2 0.00025 33.7 9.0 112 378-503 26-151 (167)
247 2p58_C Putative type III secre 82.1 14 0.00049 28.5 9.3 78 251-332 22-99 (116)
248 3o48_A Mitochondria fission 1 81.4 11 0.00036 31.2 9.2 46 523-568 60-106 (134)
249 4h7y_A Dual specificity protei 81.1 4.2 0.00014 34.4 6.8 53 519-571 73-125 (161)
250 2wpv_A GET4, UPF0363 protein Y 81.1 42 0.0014 32.5 20.0 168 274-467 36-217 (312)
251 3lpz_A GET4 (YOR164C homolog); 80.2 46 0.0016 32.5 22.0 166 173-364 38-214 (336)
252 2ff4_A Probable regulatory pro 80.1 4 0.00014 41.5 8.0 68 509-576 174-246 (388)
253 2uwj_G Type III export protein 79.9 14 0.00047 28.6 8.6 78 251-332 21-98 (115)
254 4gns_B Protein CSD3, chitin bi 79.6 41 0.0014 37.1 16.1 54 244-298 345-398 (754)
255 4fhn_B Nucleoporin NUP120; pro 78.3 64 0.0022 38.0 18.6 144 342-493 817-990 (1139)
256 1n11_A Ankyrin; clathrin, BAND 77.5 65 0.0022 32.7 17.4 113 74-197 17-137 (437)
257 1v54_E Cytochrome C oxidase po 77.5 13 0.00045 28.9 7.9 62 419-482 26-87 (109)
258 2qx5_A Nucleoporin NIC96; mRNA 77.3 86 0.0029 34.0 18.9 45 100-147 154-198 (661)
259 4fhn_B Nucleoporin NUP120; pro 77.2 49 0.0017 39.0 17.2 164 275-456 816-989 (1139)
260 4ady_A RPN2, 26S proteasome re 77.0 1E+02 0.0036 34.8 31.4 247 281-533 384-656 (963)
261 1v54_E Cytochrome C oxidase po 76.8 12 0.00042 29.1 7.6 50 498-547 37-86 (109)
262 1wdy_A 2-5A-dependent ribonucl 76.8 43 0.0015 31.3 14.2 48 349-396 191-240 (285)
263 2ff4_A Probable regulatory pro 76.3 18 0.00061 36.6 11.5 69 407-476 175-247 (388)
264 3lpz_A GET4 (YOR164C homolog); 76.0 61 0.0021 31.7 21.2 167 274-466 38-215 (336)
265 3mv2_A Coatomer subunit alpha; 72.7 55 0.0019 31.6 12.9 67 489-569 185-256 (325)
266 3eiq_C Programmed cell death p 66.4 36 0.0012 33.7 10.6 66 375-440 220-290 (358)
267 3ltm_A Alpha-REP4; protein eng 65.7 73 0.0025 28.3 17.4 48 67-114 32-79 (211)
268 2y69_E Cytochrome C oxidase su 65.2 31 0.0011 28.4 7.9 60 421-482 71-130 (152)
269 1wdy_A 2-5A-dependent ribonucl 62.8 97 0.0033 28.7 14.4 47 249-295 192-240 (285)
270 3ltj_A Alpharep-4; protein eng 62.0 83 0.0028 27.6 18.8 18 133-150 88-105 (201)
271 1zbp_A Hypothetical protein VP 61.8 76 0.0026 29.8 11.2 51 413-464 7-57 (273)
272 2y69_E Cytochrome C oxidase su 61.8 34 0.0012 28.2 7.6 51 497-547 79-129 (152)
273 3ffl_A Anaphase-promoting comp 60.9 74 0.0025 27.4 10.1 113 274-399 23-149 (167)
274 3kea_A K1L; tropism, ANK repea 60.7 68 0.0023 30.4 11.5 14 181-194 70-83 (285)
275 3txn_A 26S proteasome regulato 58.9 1.5E+02 0.0052 29.7 16.6 23 409-431 105-127 (394)
276 3o48_A Mitochondria fission 1 58.8 76 0.0026 26.2 11.2 36 506-541 78-113 (134)
277 1k1a_A B-cell lymphoma 3-encod 57.8 93 0.0032 28.1 11.7 23 212-234 17-39 (241)
278 1k1a_A B-cell lymphoma 3-encod 57.7 1E+02 0.0035 27.8 12.0 54 243-296 13-68 (241)
279 3eiq_C Programmed cell death p 55.7 65 0.0022 31.9 10.3 63 274-336 220-287 (358)
280 3esl_A Checkpoint serine/threo 53.9 98 0.0033 27.6 10.0 87 507-619 81-169 (202)
281 1zbp_A Hypothetical protein VP 53.3 23 0.0008 33.3 6.2 59 482-540 5-65 (273)
282 2zu6_B Programmed cell death p 50.6 71 0.0024 30.9 9.4 63 376-438 170-237 (307)
283 3eu9_A Huntingtin-interacting 50.1 1.2E+02 0.0041 27.1 11.1 13 182-194 118-130 (240)
284 4b4t_S RPN3, 26S proteasome re 49.6 1.9E+02 0.0067 30.1 13.0 177 372-571 231-431 (523)
285 3eu9_A Huntingtin-interacting 49.2 1.3E+02 0.0046 26.8 11.2 20 177-196 46-65 (240)
286 3kea_A K1L; tropism, ANK repea 48.8 89 0.003 29.5 10.1 17 77-93 37-53 (285)
287 3jxi_A Vanilloid receptor-rela 48.7 45 0.0015 30.9 7.8 54 209-262 10-72 (260)
288 1qsa_A Protein (soluble lytic 48.2 2.9E+02 0.0098 29.7 37.3 395 51-475 57-486 (618)
289 2nsz_A Programmed cell death p 47.7 76 0.0026 25.9 8.0 63 375-437 10-77 (129)
290 4b4t_R RPN7, 26S proteasome re 47.7 67 0.0023 32.8 9.4 95 374-468 133-238 (429)
291 3ltj_A Alpharep-4; protein eng 46.4 1.5E+02 0.0051 25.9 19.5 49 269-317 26-74 (201)
292 3hra_A Ankyrin repeat family p 46.1 1.2E+02 0.0042 26.3 10.1 16 181-196 13-28 (201)
293 1n11_A Ankyrin; clathrin, BAND 45.5 2.2E+02 0.0074 28.6 13.2 144 37-198 18-171 (437)
294 3hra_A Ankyrin repeat family p 43.6 1.5E+02 0.0053 25.6 10.4 19 77-95 11-29 (201)
295 2rfa_A Transient receptor pote 43.5 1.2E+02 0.004 27.2 9.8 46 223-268 136-183 (232)
296 3mkr_B Coatomer subunit alpha; 43.0 81 0.0028 30.4 8.3 59 497-569 187-247 (320)
297 1y8m_A FIS1; mitochondria, unk 42.7 1.5E+02 0.005 24.8 11.6 34 508-541 79-112 (144)
298 3jxi_A Vanilloid receptor-rela 42.3 30 0.001 32.2 5.5 52 109-161 12-72 (260)
299 4b4t_R RPN7, 26S proteasome re 41.4 89 0.003 31.9 9.2 95 405-499 133-233 (429)
300 2l0z_A Glycoprotein G2; zinc-b 40.6 8.5 0.00029 23.8 0.7 10 699-708 20-29 (42)
301 3ljn_A Hypothetical protein; a 39.2 1E+02 0.0035 30.2 9.2 15 383-397 252-266 (364)
302 3ltm_A Alpha-REP4; protein eng 38.5 2E+02 0.007 25.2 19.3 30 400-430 154-183 (211)
303 2ion_A PDCD4, programmed cell 38.4 75 0.0025 26.9 6.6 63 375-437 12-79 (152)
304 4a1g_A Mitotic checkpoint seri 37.1 1.9E+02 0.0065 24.4 9.2 51 523-573 82-134 (152)
305 3b7b_A Euchromatic histone-lys 34.7 2.5E+02 0.0084 25.0 10.9 42 52-94 26-67 (237)
306 2nsz_A Programmed cell death p 34.5 1.2E+02 0.0042 24.7 7.2 62 173-234 10-76 (129)
307 2d2s_A Exocyst complex compone 34.4 1.5E+02 0.0053 27.1 8.6 84 410-497 25-114 (235)
308 3ljn_A Hypothetical protein; a 32.4 1.1E+02 0.0037 30.0 8.0 15 382-396 180-194 (364)
309 2zu6_B Programmed cell death p 32.4 1.3E+02 0.0044 29.0 8.0 28 71-98 6-33 (307)
310 2wvi_A Mitotic checkpoint seri 32.1 2.4E+02 0.0082 24.1 9.3 50 524-573 78-129 (164)
311 2lo3_A SAGA-associated factor 31.1 17 0.00057 22.7 0.9 10 665-674 16-25 (44)
312 3b7b_A Euchromatic histone-lys 31.1 2E+02 0.0067 25.7 9.1 13 182-194 53-65 (237)
313 2d2s_A Exocyst complex compone 30.3 1.3E+02 0.0043 27.7 7.3 22 208-229 25-46 (235)
314 3mv2_A Coatomer subunit alpha; 29.7 3.9E+02 0.013 25.8 11.1 29 405-433 209-237 (325)
315 3d9h_A CDNA FLJ77766, highly s 29.4 2.5E+02 0.0084 26.2 9.8 20 173-192 15-34 (285)
316 2r9g_A AAA ATPase, central reg 29.2 1.7E+02 0.0057 26.0 7.3 62 307-369 16-85 (204)
317 3twe_A Alpha4H; unknown functi 28.5 46 0.0016 17.7 2.2 18 598-615 2-19 (27)
318 2r9g_A AAA ATPase, central reg 27.6 3E+02 0.01 24.4 8.7 44 206-250 16-62 (204)
319 3ygs_P Procaspase 9; apoptosis 26.1 71 0.0024 24.6 4.1 38 82-119 51-88 (97)
320 3aji_A 26S proteasome non-ATPa 25.7 3.3E+02 0.011 23.9 9.7 19 177-195 10-28 (231)
321 4b4t_S RPN3, 26S proteasome re 25.7 2.9E+02 0.0099 28.8 9.6 64 475-538 232-302 (523)
322 2rfa_A Transient receptor pote 25.4 3.5E+02 0.012 23.8 11.1 54 344-397 158-219 (232)
323 2ion_A PDCD4, programmed cell 24.6 92 0.0032 26.4 4.9 25 102-126 12-36 (152)
324 1bd8_A P19INK4D CDK4/6 inhibit 24.5 92 0.0031 25.8 5.1 14 283-296 110-123 (156)
325 1bpo_A Protein (clathrin); cla 24.5 5.8E+02 0.02 26.1 11.8 130 362-501 351-483 (494)
326 3bqo_A Telomeric repeat-bindin 24.4 3.1E+02 0.011 24.2 8.0 51 490-540 94-151 (211)
327 3aji_A 26S proteasome non-ATPa 24.2 2.1E+02 0.0071 25.4 7.9 19 75-93 10-28 (231)
328 2k0q_A Putative uncharacterize 23.5 19 0.00065 25.4 0.3 22 685-706 8-29 (74)
329 2hgo_A CASSIICOLIN; toxin, dis 21.9 18 0.0006 19.3 -0.1 13 697-709 8-22 (27)
330 1oyz_A Hypothetical protein YI 21.2 4.8E+02 0.016 23.9 21.5 244 89-349 27-279 (280)
331 1qc6_A EVH1 domain from ENA/VA 21.1 37 0.0013 28.0 1.6 40 657-704 44-87 (130)
332 2pk8_A Uncharacterized protein 21.1 34 0.0011 25.8 1.1 30 597-626 13-42 (103)
333 2fe3_A Peroxide operon regulat 20.8 2.2E+02 0.0077 23.5 6.6 34 253-286 38-71 (145)
334 4g8k_A 2-5A-dependent ribonucl 20.4 5.5E+02 0.019 24.3 16.2 280 139-437 26-328 (337)
335 3bge_A Predicted ATPase; struc 20.2 3.2E+02 0.011 24.2 7.3 44 207-250 10-56 (201)
336 4aez_C MAD3, mitotic spindle c 20.1 2.2E+02 0.0074 25.9 6.5 82 490-573 100-183 (223)
337 1bd8_A P19INK4D CDK4/6 inhibit 20.1 2.7E+02 0.0091 22.7 7.2 16 382-397 108-123 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-42 Score=386.53 Aligned_cols=482 Identities=11% Similarity=-0.023 Sum_probs=403.0
Q ss_pred HHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHH
Q 039873 76 NLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGR 155 (709)
Q Consensus 76 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (709)
..+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|. +..|+..++..+..+|...|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHH
Confidence 345678889999999999999999999999999999999999999999997 25688899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-------------------CcccHHHHHHHHHhCCC
Q 039873 156 QCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY-------------------DVFEYNSVLNGLIENEC 216 (709)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 216 (709)
.++..+... .++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987654 678899999999999999999999999954433 47899999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCcHH--HHHH-HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 039873 217 FRGGVEVLGKMVSGSVRWDS-VTYVNAFGLSASLKDLKL--GLQV-HSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKK 292 (709)
Q Consensus 217 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 292 (709)
+++|+++|++|.+.+ |+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998853 443 344444443333322221 1111 4445555555566778888999999999999999
Q ss_pred HHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 039873 293 VFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE 370 (709)
Q Consensus 293 ~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 370 (709)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++...|+.++|.+++..+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 9999987 799999999999999999999999999999765 3477889999999999999999999999999765 66
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA 447 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 447 (709)
+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 78899999999999999999999999875 3568899999999999999999999999999853 4578899999999
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD--VVAWHTLLNASRV 518 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd--~~~~~~ll~~~~~ 518 (709)
|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999764 2346789999999999999999999998865 55787 7899999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 519 HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.|++++|++.++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=362.42 Aligned_cols=479 Identities=8% Similarity=-0.044 Sum_probs=410.5
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMR--QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLS 143 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~ 143 (709)
+++..++.++..|.+.|++++|..+|++|. .||..+|+.++.+|.+.|++++|+.+|+.+. . .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED-L--YNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-G--GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-c--cccchhHHHHHHH
Confidence 678899999999999999999999999986 3788899999999999999999999999885 2 4678899999999
Q ss_pred HHhcCCCchHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---ccHH
Q 039873 144 SCSRSGRGAEGRQCHGYVFKS---------------GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDV---FEYN 205 (709)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~ 205 (709)
++.+.|++++|..+++.+... |...+..+++.++.+|.+.|++++|.++|+++...++ ..|.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999843211 2234578999999999999999999999999875433 3455
Q ss_pred HHHHHHHhCCCccHHHH--H-HHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873 206 SVLNGLIENECFRGGVE--V-LGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG 282 (709)
Q Consensus 206 ~li~~~~~~g~~~~A~~--l-~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 282 (709)
.+...+...+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++++.+.+. +++..+++.++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 55554444333322221 1 555655555666667888888999999999999999998876 588999999999999
Q ss_pred hcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHH
Q 039873 283 KCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLL 359 (709)
Q Consensus 283 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i 359 (709)
+.|++++|..+|+++.+ .+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..++..+...+.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999864 467899999999999999999999999998542 44677889999999999999999999
Q ss_pred HHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873 360 HAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP 436 (709)
Q Consensus 360 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 436 (709)
+..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99999865 5568899999999999999999999999876 3478899999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhh---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 039873 437 NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQI---GIVPG--LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAW 509 (709)
Q Consensus 437 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~ 509 (709)
+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 68899999999999999999999999997743 66787 789999999999999999999999864 2334 69999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 510 HTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 510 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
..+..+|...|++++|.+.++++++++|+++..+..|+++|..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=257.25 Aligned_cols=182 Identities=13% Similarity=0.162 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC---------hhHHHHHHHHHHHhCCCCChhH
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA---------LRHGDLLHAHIEKSGFKEHLIV 374 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~~ 374 (709)
.++.+|.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|+..+. ++.|.++|+.|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566666677777777777777777777777777777777777665443 4566677777777777777777
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH 450 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 450 (709)
||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 7777777777777777777777665 367777777777777777777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK 486 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 486 (709)
.|++++|.+++++|.+ .|..|+..+|+.+++.|..
T Consensus 188 ~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 7777777777777654 4777777777777776654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9e-28 Score=258.43 Aligned_cols=212 Identities=10% Similarity=0.071 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 039873 219 GGVEVLGKMVSGSVRWDSV-TYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL 297 (709)
Q Consensus 219 ~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 297 (709)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455666777776665543 57778888888888888888888888888888888888888888877654321
Q ss_pred cCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhH
Q 039873 298 ETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNA 377 (709)
Q Consensus 298 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 377 (709)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23445678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873 378 LINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG 452 (709)
Q Consensus 378 li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 452 (709)
||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..++..+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999987 58999999999999999999999999999999999999999999999887654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.1e-24 Score=227.68 Aligned_cols=369 Identities=13% Similarity=0.110 Sum_probs=244.3
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccH
Q 039873 143 SSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRG 219 (709)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 219 (709)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.... .+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666666553 22334445555556666666666666554322 244456666666666666666
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873 220 GVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 220 A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 298 (709)
|+..|+++.+. .|+ ..+|..+..++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666665542 233 2245555555555555555555555555443 2233344445555555555555555555443
Q ss_pred C---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHH
Q 039873 299 T---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVG 375 (709)
Q Consensus 299 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 375 (709)
+ .+..+|+.+...|.+.|++++|+..|+++. +.+ +.+...+
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~ 206 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hcC-CCcHHHH
Confidence 2 233445555555555555555555555444 332 2334556
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 039873 376 NALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHL 451 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~ 451 (709)
..+...|...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+. .|+ ..++..+..++.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 666777777788888887777654 235678888888888999999999999998884 454 56788888889999
Q ss_pred ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHH
Q 039873 452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIA 529 (709)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~ 529 (709)
|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988764 3456778889999999999999999998764 34454 788899999999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 530 EYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 530 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
+++++++|+++..|..++.+|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999988877663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.6e-23 Score=220.92 Aligned_cols=351 Identities=12% Similarity=0.060 Sum_probs=301.3
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 039873 208 LNGLIENECFRGGVEVLGKMVSGSVRWDS-VTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK 286 (709)
Q Consensus 208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 286 (709)
...+.+.|++++|++.+.++.+. .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667788999999999888764 4543 455666667788899999999998888765 6678899999999999999
Q ss_pred hHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-chHHHHHHHhccCChhHHHHHHHH
Q 039873 287 FSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-TFAVMLNSAAGLSALRHGDLLHAH 362 (709)
Q Consensus 287 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~i~~~ 362 (709)
+++|...|+++.. .+..+|..+...+.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998763 35678999999999999999999999999874 46654 455666777888999999999999
Q ss_pred HHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H
Q 039873 363 IEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-H 438 (709)
Q Consensus 363 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~ 438 (709)
+++.. +.+..+++.+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++... +.|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 99875 55678899999999999999999999998863 3567899999999999999999999999988 4564 6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNAS 516 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~ 516 (709)
.++..+...+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ .. .++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999998763 2234678999999999999999999998864 22 34688999999999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999976
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.6e-22 Score=215.30 Aligned_cols=437 Identities=9% Similarity=-0.062 Sum_probs=246.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039873 102 YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYT 181 (709)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (709)
|......+.+.|++++|+..|+++. .. .|+..+|..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWAL-EL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH-hc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3344445555566666666666555 22 2455555555555555666666666666555553 223445555555555
Q ss_pred hcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873 182 KCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQV 258 (709)
Q Consensus 182 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 258 (709)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 55666555555554422 122223333333332222222222222222111111111111100000000011111111
Q ss_pred HHHHHHcCC---------CCchHHHHHHHHHHHh---cCChHHHHHHHHhccC----------------C-CHhhHHHHH
Q 039873 259 HSQMLKSDI---------EPDVFINSAMISMYGK---CGKFSNAKKVFEGLET----------------R-NVVLWTAMV 309 (709)
Q Consensus 259 ~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li 309 (709)
...+..... +.+...+..+...+.. .|++++|...|+++.+ + +...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111110000 1123334444444443 6777777777776544 1 245677777
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHH
Q 039873 310 AACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIE 389 (709)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 389 (709)
..+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 77788888888888888777643 335566666777777777777777777777654 445667777777788888888
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 390 AANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 390 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
+|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888777654 2355677777777888888888888888877642 22455677777777788888888888877765
Q ss_pred hhCCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 467 QIGIVPG----LEHYTCIVGLLSK---AGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 467 ~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
...-.++ ...+..+...|.+ .|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 4333333 3377777777877 78888888777643 1223 466777777778888888888888888888887
Q ss_pred CCchhHHHH
Q 039873 538 NDVGTYILL 546 (709)
Q Consensus 538 ~~~~~~~~l 546 (709)
+++..+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 766555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=6.9e-21 Score=204.82 Aligned_cols=338 Identities=13% Similarity=0.029 Sum_probs=239.8
Q ss_pred CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 039873 200 DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMIS 279 (709)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 279 (709)
++..|..+...|.+.|++++|+.+|+++.+.. ..+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34456666667777777777777777766532 2245566666666667777777777777766654 445666777777
Q ss_pred HHHhcCChHHHHHHHHhccCC---CH---hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCCh
Q 039873 280 MYGKCGKFSNAKKVFEGLETR---NV---VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSAL 353 (709)
Q Consensus 280 ~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 353 (709)
+|.+.|++++|...|+++.+. +. ..|..++..+...+... +...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS-----------------------QALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHcCCH
Confidence 777777777777777776542 22 55555544422211111 11223334555
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNML 430 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (709)
+.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555443 4456677778888888888888888888775 3567889999999999999999999999998
Q ss_pred HCCCCCCHHH-HHHH------------HHHHhccccHHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHhcCCHHHHHH
Q 039873 431 AAEERPNHVT-FVGV------------LSACGHLGLVQEGFYYLNHLMKQIGIVPG--LEHYTCIVGLLSKAGLLDEAEK 495 (709)
Q Consensus 431 ~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 495 (709)
. ..|+... +..+ ...+.+.|++++|...|+.+.+..+-.|. ..++..++.++.+.|++++|.+
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7 4565443 3333 67889999999999999999764222222 4588999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH------------HHhhhcC-----Cc
Q 039873 496 FMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS------------NMYAKEK-----RW 556 (709)
Q Consensus 496 ~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~ 556 (709)
.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..+. +.|...| +.
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 98864 3345 5899999999999999999999999999999999999999888 5577667 44
Q ss_pred hhHHHHHHH
Q 039873 557 DGVSKIRKL 565 (709)
Q Consensus 557 ~~a~~~~~~ 565 (709)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-20 Score=206.61 Aligned_cols=393 Identities=9% Similarity=-0.079 Sum_probs=313.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039873 170 KYVRNALVELYTKCLDVEMAKRLLDLLPG--YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSA 247 (709)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 247 (709)
...+..+...|.+.|++++|...|+++.. ||...|..+..+|.+.|++++|+..|+++.+.+. .+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34566777889999999999999998754 6888899999999999999999999999987542 24568888999999
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHH--------------------------------
Q 039873 248 SLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFE-------------------------------- 295 (709)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~-------------------------------- 295 (709)
..|++++|.+.+..+.+.+ +++......++..+.+......+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999886 3444444444444444322222222221
Q ss_pred ------hcc---------CC-CHhhHHHHHHHHHH---cCCHhHHHHHHHHHHh-----CCCCCC--------ccchHHH
Q 039873 296 ------GLE---------TR-NVVLWTAMVAACFQ---NEYFEEALNLFCGMEY-----EAIRPN--------EFTFAVM 343 (709)
Q Consensus 296 ------~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~pd--------~~t~~~l 343 (709)
... .+ +...|......+.. .|++++|+..|+++.+ ..-.|+ ..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 100 01 13344444444444 8999999999999987 322232 3466777
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 039873 344 LNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGR 420 (709)
Q Consensus 344 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 420 (709)
...+...|+++.|...+..+.+.... ..++..+...|...|++++|...|+++.. .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88889999999999999999987633 88889999999999999999999998763 46778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873 421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 500 (709)
+|+..|++..... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++.
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999853 3356788889999999999999999999987742 334678899999999999999999998754
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 501 ----PVKWD----VVAWHTLLNASRV---HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 501 ----~~~pd----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+..++ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 21222 4488999999999 999999999999999999999999999999999999999999999999864
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2e-19 Score=193.45 Aligned_cols=363 Identities=9% Similarity=-0.035 Sum_probs=202.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 039873 169 CKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGL 245 (709)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 245 (709)
+...+..+...|.+.|++++|...|+++.. .+..+|..+...|.+.|++++|+..|+++.+.+. .+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHH
Confidence 345556666666666666666666665432 3455666666666677777777777776665431 134556666666
Q ss_pred HhcCCCcHHHHHHHHHHHHcCCCCch---HHHHHHH------------HHHHhcCChHHHHHHHHhccC---CCHhhHHH
Q 039873 246 SASLKDLKLGLQVHSQMLKSDIEPDV---FINSAMI------------SMYGKCGKFSNAKKVFEGLET---RNVVLWTA 307 (709)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li------------~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~ 307 (709)
+...|++++|.+.++.+++.. +.+. ..+..++ ..|.+.|++++|...|+++.+ .+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 667777777777777666543 2233 4444443 346666666666666666542 34556666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873 308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387 (709)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 387 (709)
+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------ 254 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------ 254 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH------
Confidence 6666666666666666666665431 1233444445555555555555555555554432 1122222221000
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccccHHHHHHHHH
Q 039873 388 IEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-----HVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 388 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
.....+..+...|...|++++|++.|+++.. +.|+ ...+..+...+.+.|++++|...++
T Consensus 255 -------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 255 -------------KKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0000112225666677777777777777766 3444 2355566666677777777777777
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----Cch
Q 039873 463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNA------------SRVHQ-----NYG 523 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~------------~~~~g-----~~~ 523 (709)
.+.+. .+.+...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+..+ |...| +.+
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 66542 1224566677777777777777777776643 33444 4444444422 22333 567
Q ss_pred HHHHHHHH-HHhcCCCCch----------hHHHHHHHhhhcCCchh
Q 039873 524 FGRRIAEY-ILHMDPNDVG----------TYILLSNMYAKEKRWDG 558 (709)
Q Consensus 524 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 558 (709)
++.+.+++ .++..|++.. .+..+..+|...|+.++
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 77888886 6777776422 34445555555554443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=7.7e-20 Score=201.43 Aligned_cols=353 Identities=10% Similarity=0.025 Sum_probs=195.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039873 100 VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVEL 179 (709)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (709)
..|..+...+.+.|++++|+..|+++.+ . .+.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE-L-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4566677778888888888888888762 2 12356777777777888888888888888888775 3356677778888
Q ss_pred HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhC------CCCCChhhHHHHHHHHhcCCCcH
Q 039873 180 YTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSG------SVRWDSVTYVNAFGLSASLKDLK 253 (709)
Q Consensus 180 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~ 253 (709)
|.+.|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+...+ ...+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChH
Confidence 88888888888888643 223333334455556666667788888887543 1223333332222 222222
Q ss_pred HHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhc--------CChHHHHHHHHhccCC---C-------HhhHHHHHHHHHH
Q 039873 254 LGLQVHSQMLKSDIEPD-VFINSAMISMYGKC--------GKFSNAKKVFEGLETR---N-------VVLWTAMVAACFQ 314 (709)
Q Consensus 254 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~--------g~~~~A~~~~~~m~~~---~-------~~~~~~li~~~~~ 314 (709)
.+...+..... ..+. ......+...|... |++++|..+|+++.+. + ..+|..+...+..
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 22221111100 0111 11233333332222 3566677777666542 1 1235555556666
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHH
Q 039873 315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKV 394 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 394 (709)
.|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77777777777776653 3444555556666666666666666666666554 33455555566666666666666666
Q ss_pred HhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 395 FSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 395 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65543 1234455555556666666666666666555531 22233555555555555555555555555544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=6.9e-18 Score=185.77 Aligned_cols=352 Identities=7% Similarity=-0.024 Sum_probs=219.2
Q ss_pred chHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHH
Q 039873 31 EDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMT 107 (709)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 107 (709)
..+..+...+.+.|+++.|...+..+++..+. ++.++..+...|.+.|++++|.+.|+++.+ .+..+|..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45677777888999999999999999988754 788999999999999999999999998763 35678888999
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 039873 108 WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL--VFCKYVRNALVELYTKCLD 185 (709)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 185 (709)
.+...|++++|+..|+.+. ..|+... ..+..+...+....+...+..+++... .+........+..|....+
T Consensus 102 ~~~~~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS----LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHh----cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999997553 2232211 112223333344667777777654311 1111222344555667777
Q ss_pred hHHHHHHHhhCCCCCcc---cHHHHHHHHHhC--------CCccHHHHHHHHHHhCCCCCC--------hhhHHHHHHHH
Q 039873 186 VEMAKRLLDLLPGYDVF---EYNSVLNGLIEN--------ECFRGGVEVLGKMVSGSVRWD--------SVTYVNAFGLS 246 (709)
Q Consensus 186 ~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~--------~~t~~~ll~~~ 246 (709)
.+.+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 78887777776655443 333333333222 4678888888888764 333 12355555566
Q ss_pred hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHH
Q 039873 247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALN 323 (709)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (709)
...|++++|.+.+..+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 67777777777777777653 3466666777777777777777777776543 345667777777777777777777
Q ss_pred HHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhc
Q 039873 324 LFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDM 398 (709)
Q Consensus 324 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 398 (709)
.|++..+.. +.+...+..+...+...|+++.|..++..+.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777766532 1123344445555555555555555555555443 333444455555555555555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=8e-17 Score=166.90 Aligned_cols=324 Identities=13% Similarity=0.008 Sum_probs=190.7
Q ss_pred cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 039873 201 VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISM 280 (709)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 280 (709)
+..|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++.+++.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34556666667777777777777777665321 134455555555556666666666666555543 3344455555555
Q ss_pred HHhcCChHHHHHHHHhccCCC------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChh
Q 039873 281 YGKCGKFSNAKKVFEGLETRN------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALR 354 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 354 (709)
|.+.|++++|...|++..+.+ ...|..+...+. + ..+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~----------------~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M----------------QRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHccCHH
Confidence 555555555555555543321 112222210000 0 00111134455556666
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|.+.|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 34556666777777777777777777776542 3556777777777778888888888877776
Q ss_pred CCCCCCHH-HHH------------HHHHHHhccccHHHHHHHHHHHHHhhCCCCCh--HHHHHHHHHHHhcCCHHHHHHH
Q 039873 432 AEERPNHV-TFV------------GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL--EHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 432 ~g~~pd~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 496 (709)
. .|+.. .+. .+...+...|++++|...++.+.+...-.+.. ..+..+...|.+.|++++|.+.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3 34322 222 22445667777777777777776542221111 2344566777777777777777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 497 MRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 497 ~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
+++. ...| +..+|..+...+...|++++|...++++++++|++......+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6643 2234 467777777777777888888888888888777777666666655443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.2e-16 Score=165.52 Aligned_cols=305 Identities=12% Similarity=0.030 Sum_probs=232.6
Q ss_pred hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHH
Q 039873 236 SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAAC 312 (709)
Q Consensus 236 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 312 (709)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777778888888888888887764 45567777788888888888888888877653 3566777778888
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCC---Ccc-chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCH
Q 039873 313 FQNEYFEEALNLFCGMEYEAIRP---NEF-TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNI 388 (709)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~g~~p---d~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 388 (709)
...|++++|+..|++..+. .| +.. .+..+.. ... ......+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~-------~~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK-------ADE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH-------HHH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH-------HHH----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888877754 23 111 1111110 000 11223456788999999
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873 389 EAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM 465 (709)
Q Consensus 389 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 465 (709)
++|...|+++. ..+...|..+...|...|++++|++.|+++.... +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 3467889999999999999999999999999852 3456788899999999999999999999987
Q ss_pred HhhCCCCChHHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCchHHHH
Q 039873 466 KQIGIVPGLEHYT------------CIVGLLSKAGLLDEAEKFMRST-PVKWD-V----VAWHTLLNASRVHQNYGFGRR 527 (709)
Q Consensus 466 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~pd-~----~~~~~ll~~~~~~g~~~~a~~ 527 (709)
+...- +...+. .+...+.+.|++++|.+.+++. ...|+ . ..|..+...+...|++++|..
T Consensus 216 ~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64222 222222 3367799999999999998754 22344 3 234557778999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 528 IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999863
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=4.7e-18 Score=174.14 Aligned_cols=343 Identities=11% Similarity=0.088 Sum_probs=165.1
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHH
Q 039873 182 KCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQ 261 (709)
Q Consensus 182 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 261 (709)
+.|++++|.++++++..++ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7788999999999996654 9999999999999999999999763 6788999999999999999999998888
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH
Q 039873 262 MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA 341 (709)
Q Consensus 262 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 341 (709)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|.++ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 55678899999999999999999988864 67789999999999999999999999977 4799
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHH
Q 039873 342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGRE 421 (709)
Q Consensus 342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (709)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999887 378999999999999999999988887765 444445579999999999999
Q ss_pred HHHHHHHHHHCCCCCC-H--HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCHHH
Q 039873 422 ALTLFQNMLAAEERPN-H--VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP------GLEHYTCIVGLLSKAGLLDE 492 (709)
Q Consensus 422 A~~~~~~m~~~g~~pd-~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 492 (709)
|+.+++..... .+- . .|...++-+--+.+.+.+..+.|..- ..++| +..+|.-++..|..-++++.
T Consensus 226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999998753 343 3 34445555555666777777766532 34444 45689999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873 493 AEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 493 A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 563 (709)
|...+-+-+ |+..--..+.....+-.+.+.--++..-.++..| ...+-|+.++...=+...+.+++
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHH
Confidence 998765542 2322223334444555565555555554454444 23444444443333333333333
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.8e-17 Score=169.82 Aligned_cols=284 Identities=11% Similarity=0.066 Sum_probs=114.4
Q ss_pred HccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHH
Q 039873 79 AKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCH 158 (709)
Q Consensus 79 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 158 (709)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37789999999999997765 8999999999999999999999653 47789999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhh
Q 039873 159 GYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVT 238 (709)
Q Consensus 159 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 238 (709)
...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 888875 55688899999999999999999988864 67779999999999999999999999987 36
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCH
Q 039873 239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYF 318 (709)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 318 (709)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888888888888888888888876 367888888888888888888877776654 3444444678888888888
Q ss_pred hHHHHHHHHHHhCCCCCCccchHHHHHHHhc--cCChhHHHHHHHHHHHhCCCC------ChhHHhHHHhHHHhcCCHHH
Q 039873 319 EEALNLFCGMEYEAIRPNEFTFAVMLNSAAG--LSALRHGDLLHAHIEKSGFKE------HLIVGNALINMYAKGGNIEA 390 (709)
Q Consensus 319 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~ 390 (709)
++|+.+++...... +-....|+-+--++++ .+.+.+..+.|. .+.++++ +...|..++-.|.+-++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 88888888776432 2222333333333332 223333333222 1122222 34455566666666666666
Q ss_pred HHHHH
Q 039873 391 ANKVF 395 (709)
Q Consensus 391 A~~~f 395 (709)
|....
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-16 Score=162.75 Aligned_cols=286 Identities=9% Similarity=-0.051 Sum_probs=211.5
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH
Q 039873 268 EPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML 344 (709)
Q Consensus 268 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 344 (709)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44555666667777777777777777777653 234556666677777777777777777776642 22345566666
Q ss_pred HHHhccC-ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 039873 345 NSAAGLS-ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGR 420 (709)
Q Consensus 345 ~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 420 (709)
..+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6677777 7777777777777654 44566777888888888888888888887652 34567777888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC-------CCChHHHHHHHHHHHhcCCHHHH
Q 039873 421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI-------VPGLEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A 493 (709)
+|++.|++..+.. +.+...+..+...+...|++++|...++.+.+...- +.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999888742 334567888888888899999999998888764311 33356888899999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh-hhcCCc
Q 039873 494 EKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY-AKEKRW 556 (709)
Q Consensus 494 ~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 556 (709)
.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++..| ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9887753 2223 4778888888999999999999999999999999988888888888 455553
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=5.4e-14 Score=159.96 Aligned_cols=469 Identities=12% Similarity=0.054 Sum_probs=302.9
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHH-HHHHHh
Q 039873 33 TLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSL-MTWYLH 111 (709)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l-i~~~~~ 111 (709)
...|+..+-++.++..-+..++.-+..|.. ++.++|+|...|...++-.+ +.+.+=+ . |.++ +.-||.
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g~~----~~~~hnalakiyid~n~npe--~fL~~n~----~-yd~~~vgkyce 910 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEGCE----EPATHNALAKIYIDSNNNPE--RFLRENP----Y-YDSRVVGKYCE 910 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHhccCCCHH--HHhhccC----c-ccHHHHHHHHH
Confidence 445555555666666666667777777764 89999999999997553222 2221111 1 2221 222333
Q ss_pred CCChhHHHHHHHHhhh---------CCC----------CCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC--CCch
Q 039873 112 NGFLLETLKLFKNMVS---------GDN----------LEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL--VFCK 170 (709)
Q Consensus 112 ~g~~~~A~~~~~~m~~---------~~g----------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~ 170 (709)
..++..|.-.|++=.- +.+ -+-|...|..++. .+-+.-+++.++.....+ ..|+
T Consensus 911 ~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~P 985 (1630)
T 1xi4_A 911 KRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDP 985 (1630)
T ss_pred hcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCH
Confidence 3333333322221000 000 0124444554442 122333455555554443 2334
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039873 171 YVRNALVELYTKCLDVEMAKRLLDLLPGY------DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFG 244 (709)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 244 (709)
.--...+..|...|...+|.++++++.-. +...-|.++...++. +..+..++..+... .....+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 44566678888888888888888877532 224455677666666 45566666555531 11333666
Q ss_pred HHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 039873 245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNL 324 (709)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 324 (709)
.|...|.+++|.++|+... ......+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7778888888888888752 111222223 226778888888888763 466788888888888888888888
Q ss_pred HHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChh
Q 039873 325 FCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII 404 (709)
Q Consensus 325 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 404 (709)
|.+. -|...|..++.+|.+.|+++++.+++....+.. ++..+.+.++..|++.+++++..... ..++..
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence 8553 355667778888888888888888888877754 44444556888888888888544332 455667
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
.|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence 7777888888888888888888874 37888888888888888888887764 3446788888888
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc--CCchhHHHH
Q 039873 485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE--KRWDGVSKI 562 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~ 562 (709)
...|++..|....... .-++..+..++..|...|.+++|+.+++..+.++|.+...|.-|+.+|++. ++..|+.+.
T Consensus 1261 ve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888876543 334555667888888888888888888888888888877887777777653 455555555
Q ss_pred HH
Q 039873 563 RK 564 (709)
Q Consensus 563 ~~ 564 (709)
|.
T Consensus 1339 f~ 1340 (1630)
T 1xi4_A 1339 FW 1340 (1630)
T ss_pred HH
Confidence 54
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=9e-15 Score=158.84 Aligned_cols=365 Identities=10% Similarity=-0.053 Sum_probs=267.7
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcccHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCChhhH
Q 039873 169 CKYVRNALVELYTK----CLDVEMAKRLLDLLPG-YDVFEYNSVLNGLIE----NECFRGGVEVLGKMVSGSVRWDSVTY 239 (709)
Q Consensus 169 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 239 (709)
+......|-..|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555555555 6667777776665433 355566666666766 677777777777776654 44555
Q ss_pred HHHHHHHhc----CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhccC-CCHhhHHHHHH
Q 039873 240 VNAFGLSAS----LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK----CGKFSNAKKVFEGLET-RNVVLWTAMVA 310 (709)
Q Consensus 240 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 310 (709)
..+...+.. .++.++|.+.++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555556655 677788888888777765 45666777777776 6778888888877654 46677777777
Q ss_pred HHHH----cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873 311 ACFQ----NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG----LSALRHGDLLHAHIEKSGFKEHLIVGNALINMY 382 (709)
Q Consensus 311 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 382 (709)
.|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7777 788888888888877654 34455555555554 678888888888887764 455666777778
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873 383 AK----GGNIEAANKVFSDMRY-RDIITWNAMICGYSHH-----GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG 452 (709)
Q Consensus 383 ~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 452 (709)
.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 8999999999998764 4667888888888887 89999999999998865 3455666666666545
Q ss_pred ---cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 039873 453 ---LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQN 521 (709)
Q Consensus 453 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~ 521 (709)
+.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.--..+...+..|...+.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 889999999998763 357788889999988 89999999999865323467888888888887 899
Q ss_pred chHHHHHHHHHHhcCCC---CchhHHHHHHHhhh
Q 039873 522 YGFGRRIAEYILHMDPN---DVGTYILLSNMYAK 552 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 552 (709)
.++|...++++.+.+|+ ++.....|..++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 66666777666654
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=6.9e-15 Score=161.46 Aligned_cols=209 Identities=7% Similarity=-0.033 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhHHHh-------cCCHH-------HHHHHHhhcCC---C-ChhhHHHHHHHHHHc
Q 039873 355 HGDLLHAHIEKSGFKEHLIVGNALINMYAK-------GGNIE-------AANKVFSDMRY---R-DIITWNAMICGYSHH 416 (709)
Q Consensus 355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~ 416 (709)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6667888888763 5677888888888876 79987 89999998763 3 577999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHH-HHhcCCHHH
Q 039873 417 GLGREALTLFQNMLAAEERPNH--VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGL-LSKAGLLDE 492 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 492 (709)
|++++|.++|+++.+ +.|+. ..|...+..+.+.|++++|..+|+...+. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 56753 47888888888899999999999998653 333 3333332222 346899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch----hHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 493 AEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG----TYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 493 A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
|.++|+.. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+......|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998843 2235 4889999999999999999999999999998766554 6777788888899999999999988
Q ss_pred HhC
Q 039873 567 KVR 569 (709)
Q Consensus 567 ~~~ 569 (709)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-15 Score=156.41 Aligned_cols=264 Identities=11% Similarity=0.030 Sum_probs=226.4
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHH
Q 039873 300 RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALI 379 (709)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 379 (709)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|+.++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677788889999999999999999998753 2344566677888899999999999999999875 55778899999
Q ss_pred hHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 039873 380 NMYAKGG-NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 380 ~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 455 (709)
..|...| ++++|...|++... .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 456789999999999999999999999999853 334567777888999999999
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCchH
Q 039873 456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP-----------VKWDVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~pd~~~~~~ll~~~~~~g~~~~ 524 (709)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.- ...+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998652 23456789999999999999999999976431 02336789999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987764
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=4.2e-16 Score=162.44 Aligned_cols=277 Identities=9% Similarity=-0.061 Sum_probs=194.5
Q ss_pred cCChHHHHH-HHHhccC---C----CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhH
Q 039873 284 CGKFSNAKK-VFEGLET---R----NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRH 355 (709)
Q Consensus 284 ~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 355 (709)
.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555655 5554322 1 23445566666666666666666666666542 2233455555566666666666
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHH---------------HHHHHHHcC
Q 039873 356 GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNA---------------MICGYSHHG 417 (709)
Q Consensus 356 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~~~~~g 417 (709)
|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 666666666654 34556666677777777777777777766542 1 1112211 133334889
Q ss_pred ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 418 LGREALTLFQNMLAAEERPN---HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
++++|++.|+++... .|+ ..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999884 444 678888999999999999999999998764 2334678999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-----------chhHHHHHHHhhhcCCchhHHH
Q 039873 495 KFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND-----------VGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 495 ~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
+.+++. ...| +..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 998754 2334 48889999999999999999999999999988877 7899999999999999999999
Q ss_pred HHHHH
Q 039873 562 IRKLM 566 (709)
Q Consensus 562 ~~~~m 566 (709)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 88643
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.3e-15 Score=158.79 Aligned_cols=295 Identities=9% Similarity=-0.076 Sum_probs=149.3
Q ss_pred hCCCccHHHH-HHHHHHhCCC---CCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 039873 213 ENECFRGGVE-VLGKMVSGSV---RWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFS 288 (709)
Q Consensus 213 ~~g~~~~A~~-l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 288 (709)
..|++++|++ .|.+...... ..+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 5554433211 1123445566666666677777777777666654 445667777777888888888
Q ss_pred HHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHH
Q 039873 289 NAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEK 365 (709)
Q Consensus 289 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 365 (709)
+|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.......+... .
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~----------- 176 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A----------- 176 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h-----------
Confidence 88888876643 466778888888888888888888888887653 3322111100000 0
Q ss_pred hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873 366 SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YR---DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT 440 (709)
Q Consensus 366 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 440 (709)
+.......+..+...+ +.|++++|...|+++. .| +..+|..+...|...|++++|++.|+++.... +.+..+
T Consensus 177 -~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 177 -GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 0000000011111122 4445555555554443 11 23445555555555555555555555554421 122344
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC------------CHH
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW------------DVV 507 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------d~~ 507 (709)
+..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.+++. ...| ...
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 555555555555555555555555432 1122344555555555555555555554422 0001 145
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHH
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYI 532 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~ 532 (709)
+|..+..++...|+.++|..++++.
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHH
Confidence 6666666666666666666655543
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=7.7e-13 Score=150.67 Aligned_cols=379 Identities=10% Similarity=0.066 Sum_probs=245.9
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHH
Q 039873 67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQ-R-----NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSI 140 (709)
Q Consensus 67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ 140 (709)
++.--...+..|+..|.+.+|.++++++.- + +...-|.|+.+..+. +..+..+..+... .+...-
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHH
Confidence 333345566667777777777777776652 1 223455555555555 3344444444331 111333
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHH
Q 039873 141 VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGG 220 (709)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 220 (709)
+...|...|.+++|.++++... ......+.+ +...|++++|.++.++.. +..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 5556667777777777777641 111112222 226677777777777663 456777888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 039873 221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR 300 (709)
Q Consensus 221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 300 (709)
++.|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 8888653 356677778888888888888888888777654 34344445888888888877544432 344
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873 301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN 380 (709)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 380 (709)
+...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.+ .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5666777777888888888888888774 26777888888888888888777765 34567777777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH--HHHHHHHhccccHHHH
Q 039873 381 MYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TF--VGVLSACGHLGLVQEG 457 (709)
Q Consensus 381 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~--~~ll~a~~~~g~~~~a 457 (709)
++...|++..|...... ...+...+..++..|...|.+++|+.+++.... +.|... .| ..++.+-.+.+++.++
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 77778888888877665 233445566778888888888888888877664 334322 33 4445555556666666
Q ss_pred HHHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 458 FYYLNHLMKQIGIVP------GLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 458 ~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
.++|..- ..++| +..+|.-++-.|.+.|+++.|...
T Consensus 1336 lk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1336 LELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666542 23333 356688888888888888888754
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=3.9e-14 Score=155.45 Aligned_cols=405 Identities=9% Similarity=0.032 Sum_probs=276.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 039873 98 NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALV 177 (709)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (709)
|..+|..++. +.+.|++++|..+|+++. .. .+-+...|...+..+.+.|+++.|+.+++.+++.. |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al-~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLV-AQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHH-TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6678888888 478899999999999987 22 33356678888888888899999999999888764 5666777666
Q ss_pred H-HHHhcCChHHHHH----HHhhCC------CCCcccHHHHHHHHHh---------CCCccHHHHHHHHHHhCCCCCCh-
Q 039873 178 E-LYTKCLDVEMAKR----LLDLLP------GYDVFEYNSVLNGLIE---------NECFRGGVEVLGKMVSGSVRWDS- 236 (709)
Q Consensus 178 ~-~y~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~- 236 (709)
. .+...|+.+.|.+ +|+... ..+...|...+....+ .|++++|..+|++.++. |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 4 3345577666654 555431 1345567777765554 57777888888887762 332
Q ss_pred --hhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-------cc------CCC
Q 039873 237 --VTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEG-------LE------TRN 301 (709)
Q Consensus 237 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------m~------~~~ 301 (709)
..|..........+. .+...++. .+.++++.|..++.. +. .++
T Consensus 164 ~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 122211111000000 01111110 123345555555443 11 111
Q ss_pred --------HhhHHHHHHHHHHc----CCH----hHHHHHHHHHHhCCCCC-CccchHHHHHHHhc-------cCChh---
Q 039873 302 --------VVLWTAMVAACFQN----EYF----EEALNLFCGMEYEAIRP-NEFTFAVMLNSAAG-------LSALR--- 354 (709)
Q Consensus 302 --------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~-------~~~~~--- 354 (709)
...|...+.-...+ ++. ++++.+|++.... .| +...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 34666665433332 222 3777888888764 34 44555555555553 68877
Q ss_pred ----HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-Ch-hhHHHHHHHHHHcCChHHHHHHH
Q 039873 355 ----HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DI-ITWNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 355 ----~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 426 (709)
.|..+++.+++.-.+.+..++..++..+.+.|++++|..+|+++.. | +. ..|..++..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999988733456788999999999999999999999998763 3 33 48999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHH-HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 039873 427 QNMLAAEERPN-HVTFVGVLSA-CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST---- 500 (709)
Q Consensus 427 ~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 500 (709)
++..+. .|+ ...+...... +...|++++|..+|+..++..+ .+...|..+++.+.+.|+.++|+.+|++.
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999884 343 3333332222 3358999999999999887542 34678999999999999999999998854
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 501 PVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 501 ~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
+..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 33333 568999999999999999999999999998874
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.2e-13 Score=149.88 Aligned_cols=352 Identities=10% Similarity=-0.030 Sum_probs=293.5
Q ss_pred CCcccHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCcHHHHHHHHHHHHcCCCCc
Q 039873 199 YDVFEYNSVLNGLIE----NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS----LKDLKLGLQVHSQMLKSDIEPD 270 (709)
Q Consensus 199 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 270 (709)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677777788887 899999999999998864 56677777777777 899999999999999876 6
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCccchH
Q 039873 271 VFINSAMISMYGK----CGKFSNAKKVFEGLETR-NVVLWTAMVAACFQ----NEYFEEALNLFCGMEYEAIRPNEFTFA 341 (709)
Q Consensus 271 ~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~ 341 (709)
...+..|..+|.. .++.++|...|++..+. +...+..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777888899988 78999999999987654 67788888888887 889999999999998865 556666
Q ss_pred HHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHH
Q 039873 342 VMLNSAAG----LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMRY-RDIITWNAMICG 412 (709)
Q Consensus 342 ~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~ 412 (709)
.+...+.. .++.++|...+....+.| +......|..+|.. .++.++|...|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777766 789999999999999875 56778888888987 8999999999998764 567788888888
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873 413 YSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL-----GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL 483 (709)
Q Consensus 413 ~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 483 (709)
|.. .++.++|++.|++..+.| +...+..+...+... +++++|..+++...+. + +...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999998765 445666666667666 8999999999998763 3 45678888888
Q ss_pred HHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh----
Q 039873 484 LSKAG---LLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK---- 552 (709)
Q Consensus 484 ~~~~g---~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 552 (709)
|.+.| ++++|.+.|++.--..++..+..|...+.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88877 789999998865323578889999999988 899999999999999875 56789999999998
Q ss_pred cCCchhHHHHHHHHHhCCC
Q 039873 553 EKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~~~~ 571 (709)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=7.5e-16 Score=160.46 Aligned_cols=261 Identities=7% Similarity=-0.101 Sum_probs=196.6
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873 301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN 380 (709)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 380 (709)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34557777777777777777777777777642 2245566777777777777777777777777764 445677788888
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-C----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 039873 381 MYAKGGNIEAANKVFSDMRY--R-D----------IITWNAMICGYSHHGLGREALTLFQNMLAAEER-PNHVTFVGVLS 446 (709)
Q Consensus 381 ~y~~~g~~~~A~~~f~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~ 446 (709)
.|.+.|++++|...|+++.+ | + ...+..+...|...|++++|+++|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887753 2 1 123344578888999999999999999885311 15778888999
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~ 524 (709)
.+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998764 2345778999999999999999999998754 23454 8889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873 525 GRRIAEYILHMDPN------------DVGTYILLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 525 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 565 (709)
|...+++++++.|+ +...+..|..+|...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998765 357789999999999999988887764
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.2e-14 Score=143.71 Aligned_cols=268 Identities=10% Similarity=-0.020 Sum_probs=200.6
Q ss_pred HHhcCChHHHHHHHHhccCCCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHH
Q 039873 281 YGKCGKFSNAKKVFEGLETRNV----VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHG 356 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 356 (709)
....|++..|+..++.....+. ...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456777777777776554332 2334456777777777777765543 1234555666666777777777777
Q ss_pred HHHHHHHHHhCC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 039873 357 DLLHAHIEKSGF-KEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEER 435 (709)
Q Consensus 357 ~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (709)
.+.++.++..+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777777776654 34556667778899999999999999998 567889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 039873 436 PNHVTF---VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWH 510 (709)
Q Consensus 436 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~ 510 (709)
|+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 765321 12233344568999999999999875 4457789999999999999999999998863 3445 488899
Q ss_pred HHHHHHHhcCCchH-HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHH
Q 039873 511 TLLNASRVHQNYGF-GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKI 562 (709)
Q Consensus 511 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 562 (709)
.++..+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999876 678999999999998653 3456666666665543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.5e-14 Score=153.42 Aligned_cols=328 Identities=12% Similarity=0.008 Sum_probs=182.5
Q ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHHHcC------CC-CchHHHHHHHHHHHhc--CChHHHHHHHHhccC---CCHhh
Q 039873 237 VTYVNAFGLSASLKDLKLGLQVHSQMLKSD------IE-PDVFINSAMISMYGKC--GKFSNAKKVFEGLET---RNVVL 304 (709)
Q Consensus 237 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~-~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~~---~~~~~ 304 (709)
.+|..+..++...|++++|...++.+.+.. .. ....+++.+..++.+. +++++|...|++..+ .+...
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 345555555555555555555555544320 01 1233444444444443 346677777766543 23444
Q ss_pred HHHHHHH---HHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHh----ccCChhHHHHHHHHHHHhCCCCChhHHh
Q 039873 305 WTAMVAA---CFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAA----GLSALRHGDLLHAHIEKSGFKEHLIVGN 376 (709)
Q Consensus 305 ~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 376 (709)
+..+... +...++.++|++.|++..+. .|+ ..++..+...+. ..++.+.|.+.+..+.+.. +.+..++.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~ 251 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence 4444333 33446666777777766653 233 233333333332 2355667777777776654 45566677
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCC
Q 039873 377 ALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSH-------------------HGLGREALTLFQNMLAAEE 434 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~ 434 (709)
.+...|.+.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+..
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 330 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN- 330 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-
Confidence 777777777777777777776652 234455555554432 233567888888877742
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH----HHHHHHH-HHHhcCCHHHHHHHHHh-CCCCCCHHH
Q 039873 435 RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE----HYTCIVG-LLSKAGLLDEAEKFMRS-TPVKWDVVA 508 (709)
Q Consensus 435 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~-~~~~pd~~~ 508 (709)
+.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|+.++|++.+++ +.+.|+...
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 223446777888889999999999999988653 33322 2233333 23467899999998764 345666544
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEE
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWT 580 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 580 (709)
+... ...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3332 24456778888899999999999999999999999999999999988664433345554
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=9.7e-15 Score=151.99 Aligned_cols=231 Identities=11% Similarity=-0.053 Sum_probs=196.1
Q ss_pred CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHH
Q 039873 336 NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICG 412 (709)
Q Consensus 336 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 412 (709)
+...+......+...|+++.|..++..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888889999999999999999999876 5678899999999999999999999999876 3467899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHV-----------TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV 481 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 481 (709)
|...|++++|++.|+++.+. .|+.. .+..+...+...|++++|..+++.+.+..+..++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 45432 223456788999999999999999987644434688999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873 482 GLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 559 (709)
..|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998754 2234 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 039873 560 SKIRKLMKVR 569 (709)
Q Consensus 560 ~~~~~~m~~~ 569 (709)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=8.5e-17 Score=177.34 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=132.6
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhcc-------CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccc
Q 039873 267 IEPDVFINSAMISMYGKCGKFSNAKKVFEGLE-------TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT 339 (709)
Q Consensus 267 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 339 (709)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCh-hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHH
Q 039873 340 FAVMLNSAAGLSAL-RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAMICGY 413 (709)
Q Consensus 340 ~~~ll~~~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~ 413 (709)
|+++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+.- +.+.+.+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 78899999999999999999999999988887666666666554442 1233444556666
Q ss_pred HHcCC---------hHHHHHHHHHH
Q 039873 414 SHHGL---------GREALTLFQNM 429 (709)
Q Consensus 414 ~~~g~---------~~~A~~~~~~m 429 (709)
.+.+. .++-.++|++=
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHH
Confidence 65552 34555566553
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=176.70 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=112.6
Q ss_pred CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873 368 FKEHLIVGNALINMYAKGGNIEAANKVFSDMR-------YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT 440 (709)
Q Consensus 368 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 440 (709)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997754 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873 441 FVGVLSACGHLGL-VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 441 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 498 (709)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....+.+-++...++..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 9999999999987 5788899999977 5999999999999988888777666666633
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=6.9e-15 Score=150.18 Aligned_cols=256 Identities=11% Similarity=-0.031 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc
Q 039873 273 INSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG 349 (709)
Q Consensus 273 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 349 (709)
.+..+...+.+.|++++|..+|+++.+ .+...|..+...+...|++++|.+.|+++.+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------ 84 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------ 84 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Confidence 344555556666666666666665532 24455555666666666666666666665543
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHH--------------HH-
Q 039873 350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAM--------------IC- 411 (709)
Q Consensus 350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~- 411 (709)
. +.+..++..+...|.+.|++++|...|+++.. .+...+..+ ..
T Consensus 85 -----------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 85 -----------------D-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp -----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred -----------------C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 2 22333444444445555555555555544331 111122222 22
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (709)
.+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|+++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence 3667788899999999988753 335678888888889999999999999988764 2334678889999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC------------CchhHHHHHHHhhhcCCch
Q 039873 492 EAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN------------DVGTYILLSNMYAKEKRWD 557 (709)
Q Consensus 492 ~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 557 (709)
+|.+.+++. ...| +..+|..+...+...|++++|.+.++++++..|+ +...+..++.+|...|+++
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 999988753 2234 4888999999999999999999999999999998 7889999999999999999
Q ss_pred hHHHHHHHHH
Q 039873 558 GVSKIRKLMK 567 (709)
Q Consensus 558 ~a~~~~~~m~ 567 (709)
+|..++++..
T Consensus 304 ~A~~~~~~~l 313 (327)
T 3cv0_A 304 LVELTYAQNV 313 (327)
T ss_dssp HHHHHTTCCS
T ss_pred HHHHHHHHHH
Confidence 9999887543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1.4e-13 Score=140.35 Aligned_cols=225 Identities=11% Similarity=0.008 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH--
Q 039873 270 DVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML-- 344 (709)
Q Consensus 270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-- 344 (709)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. |+.......+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhH
Confidence 444455555556666666666666655432 345566666777777777777777777776542 3222221111
Q ss_pred ------------HH--HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHH
Q 039873 345 ------------NS--AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWN 407 (709)
Q Consensus 345 ------------~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~ 407 (709)
.. +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+..+|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 210 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN 210 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 22 555666677777776666654 3355666666666777777777776666554 23455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC----------ChHHH
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP----------GLEHY 477 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----------~~~~~ 477 (709)
.+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++.+.+...-.. +...+
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 66666666677777777766666532 22345566666666666666666666666654321100 23455
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 039873 478 TCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~ 498 (709)
..+..+|.+.|++++|.++++
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 555566666666666655544
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=3.9e-13 Score=134.64 Aligned_cols=248 Identities=10% Similarity=-0.013 Sum_probs=183.6
Q ss_pred HHhcCChHHHHHHHhhCCCCCc----ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873 180 YTKCLDVEMAKRLLDLLPGYDV----FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG 255 (709)
Q Consensus 180 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 255 (709)
....|.+..|...++.....+. ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456778888888777655432 23345677888888888888766542 345566777788888888888888
Q ss_pred HHHHHHHHHcCC-CCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 039873 256 LQVHSQMLKSDI-EPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIR 334 (709)
Q Consensus 256 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 334 (709)
.+.++.++..+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888888887764 44566777788899999999999999998 567888999999999999999999999999875 3
Q ss_pred CCccchHHH----HHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHH
Q 039873 335 PNEFTFAVM----LNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWN 407 (709)
Q Consensus 335 pd~~t~~~l----l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~ 407 (709)
|+.. ...+ +..+...|++++|..+++.+.+.. +.+..+++.+..+|.+.|++++|...|++.. ..+..+|.
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6543 2222 233334578888888888888763 5677777888888888888888888888765 23566777
Q ss_pred HHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHH
Q 039873 408 AMICGYSHHGLGRE-ALTLFQNMLAAEERPNHV 439 (709)
Q Consensus 408 ~li~~~~~~g~~~~-A~~~~~~m~~~g~~pd~~ 439 (709)
.++..+...|+.++ +.++++++.+ +.|+..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 77877777887765 4677777777 456644
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=4.9e-13 Score=144.33 Aligned_cols=382 Identities=9% Similarity=-0.070 Sum_probs=225.6
Q ss_pred CCChhhHHHHHHHHhcCCCchHHHHHHHHHHHh-----C--CCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----
Q 039873 132 EPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS-----G--LVF-CKYVRNALVELYTKCLDVEMAKRLLDLLPG----- 198 (709)
Q Consensus 132 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----- 198 (709)
......|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+..+|...|++++|...+++...
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567888888888999999999999887653 1 122 345788888999999999999888775421
Q ss_pred --C----CcccHHHHHHHHHh--CCCccHHHHHHHHHHhCCCCCChh-hHHHHHHH---HhcCCCcHHHHHHHHHHHHcC
Q 039873 199 --Y----DVFEYNSVLNGLIE--NECFRGGVEVLGKMVSGSVRWDSV-TYVNAFGL---SASLKDLKLGLQVHSQMLKSD 266 (709)
Q Consensus 199 --~----~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g 266 (709)
+ ...+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.++..++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 22345555555554 45688999999998774 45433 33333333 455677788888888888765
Q ss_pred CCCchHHHHHHHHHHHh----cCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-
Q 039873 267 IEPDVFINSAMISMYGK----CGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF- 338 (709)
Q Consensus 267 ~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~- 338 (709)
+.+..++..+...+.+ .|+.++|.+.+++... .+...|+.+...|...|++++|+..|++..+. .|+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 4455666666555544 4567788888887543 46678888888999999999999999888764 45432
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHH
Q 039873 339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSH 415 (709)
Q Consensus 339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 415 (709)
++..+...+...+ .. .... ............+..+.|...|++.. ..+..+|..+...|..
T Consensus 283 ~~~~lg~~y~~~~-----~~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKV-----FQ----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHH-----HH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HH----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 3333332221110 00 0000 00011111122234567777777654 3456789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPNHV--TFVGVLS-ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE 492 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (709)
.|++++|++.|++.......|... .+..+.. .....|+.++|+..|.+..+ +.|+........ +.
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HH
Confidence 999999999999998854333221 2222222 23567899999999998764 456543332222 22
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 493 AEKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 493 A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
+.++++.. ... .+..+|..|...+...|++++|++.++++++++|.++.+..-+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23333211 112 3578899999999999999999999999999998877655443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=6.6e-13 Score=130.22 Aligned_cols=219 Identities=13% Similarity=0.025 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873 303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY 382 (709)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 382 (709)
..|..+...+...|++++|+..|++..+.. . +..++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 345555556666666666666666655443 3 344445555555
Q ss_pred HhcCCHHHHHHHHhhcCC--C----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873 383 AKGGNIEAANKVFSDMRY--R----D----IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG 452 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 452 (709)
...|++++|...|++... | + ...|..+...|...|++++|++.|++... +.|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 556666666666555442 1 1 46777788888888888888888888887 44553 2355668
Q ss_pred cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 039873 453 LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAE 530 (709)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~ 530 (709)
++++|...++.+... .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++
T Consensus 120 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888999888887652 2234567888888999999999999988754 2223 58888999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 531 YILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 531 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988753
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=7.2e-13 Score=126.61 Aligned_cols=194 Identities=13% Similarity=0.017 Sum_probs=155.1
Q ss_pred CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039873 369 KEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGV 444 (709)
Q Consensus 369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 444 (709)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888999999999999999998753 46778999999999999999999999999984 564 5678888
Q ss_pred HHHHhcc-----------ccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 039873 445 LSACGHL-----------GLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHT 511 (709)
Q Consensus 445 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ 511 (709)
...+... |++++|...++...+. .| +...+..+..+|...|++++|++.|++. .+..+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888889 9999999999998764 44 4678889999999999999999998753 11267889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 512 LLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 512 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=9.7e-13 Score=129.01 Aligned_cols=236 Identities=12% Similarity=-0.011 Sum_probs=160.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CCCccchHHHHHH
Q 039873 271 VFINSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAI--RPNEFTFAVMLNS 346 (709)
Q Consensus 271 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~ 346 (709)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 46788899999999999999999988643 6778899999999999999999999999875321 11110
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHH
Q 039873 347 AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDIITWNAMICGYSHHGLGREALT 424 (709)
Q Consensus 347 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 424 (709)
....++..+...|.+.|++++|...|++... ++ ...+...|++++|++
T Consensus 77 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 -----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence 0023334445555555555555555555442 22 123445566677777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 039873 425 LFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV 502 (709)
Q Consensus 425 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 502 (709)
.++++.. ..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ..
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777666 3343 3456666666777777777777777766532 234566777777777788888887776643 22
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCchhHHHHHH
Q 039873 503 KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMD------PNDVGTYILLSN 548 (709)
Q Consensus 503 ~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 548 (709)
.| +..+|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 33 37778888888888889999999998888887 766655555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.2e-12 Score=129.90 Aligned_cols=240 Identities=8% Similarity=-0.147 Sum_probs=175.0
Q ss_pred cCCHhHHHHHHHHHHhCCCC--C-CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873 315 NEYFEEALNLFCGMEYEAIR--P-NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA 391 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~g~~--p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 391 (709)
.|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45566666666666654211 1 23445555666666666666666666666654 44567778888888889999999
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Q 039873 392 NKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQI 468 (709)
Q Consensus 392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 468 (709)
...|+++.. .+..+|..+...|.+.|++++|++.|+++.+ ..|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998887763 4677899999999999999999999999988 45666555555566677899999999998877642
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873 469 GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 542 (709)
+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 175 --~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 --DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 3333344 4777788888899999988754 22232 5778888999999999999999999999999977544
Q ss_pred HHHHHHHhhhcCCchhHHHHH
Q 039873 543 YILLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 543 ~~~l~~~~~~~g~~~~a~~~~ 563 (709)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66778889998887765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=4.7e-12 Score=135.41 Aligned_cols=372 Identities=8% Similarity=-0.020 Sum_probs=197.1
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhCC----
Q 039873 143 SSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV---EMAKRLLDLLPGYDVFEYNSVLNGLIENE---- 215 (709)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g---- 215 (709)
..+.+.|++++|.+++..+.+.|. ...+..|-.+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 334455667777777777666652 22333444555556666 77777777766656666666666555554
Q ss_pred -CccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCc---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----h
Q 039873 216 -CFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDL---KLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK----F 287 (709)
Q Consensus 216 -~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----~ 287 (709)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+....+.| +......|..+|...+. .
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 5667777777777655322 444444444433322 23444444444444 23445556666666553 3
Q ss_pred HHHHHHHHhccCCCHhhHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873 288 SNAKKVFEGLETRNVVLWTAMVAACFQNE---YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE 364 (709)
Q Consensus 288 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 364 (709)
+.+..+++.....+...+..|...|...| +.++|++.|++..+.|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------------------------------- 209 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------------------------------- 209 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------------------------
Confidence 44444555555555556666666666666 6666666666665544
Q ss_pred HhCCCCChhHHhHHHhHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCC
Q 039873 365 KSGFKEHLIVGNALINMYAKG----GNIEAANKVFSDMRYRDIITWNAMICG-Y--SHHGLGREALTLFQNMLAAEERPN 437 (709)
Q Consensus 365 ~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~pd 437 (709)
+++...+..|..+|... ++.++|...|++....+...+..|... | ...+++++|++.|++..+.| +
T Consensus 210 ----~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 210 ----TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp ----CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 22222223333444332 566677777766553345566666555 3 34677788888888777765 4
Q ss_pred HHHHHHHHHHHhccc-----cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHH
Q 039873 438 HVTFVGVLSACGHLG-----LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVA 508 (709)
Q Consensus 438 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~ 508 (709)
...+..+...+. .| ++++|..+|+... .-+...+..|..+|.. ..++++|.+.|++..-.-+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 445555555554 44 7888888777653 3455666677777765 3378888888775422223444
Q ss_pred HHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 509 WHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 509 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...|...|.. ..|.++|...++++.+.++.+.......+......++.++|.++.++...
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4555555542 45888899999888887765443333333333344566677777666544
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=4.6e-12 Score=125.51 Aligned_cols=251 Identities=11% Similarity=0.011 Sum_probs=138.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccc----hHHHHH
Q 039873 273 INSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT----FAVMLN 345 (709)
Q Consensus 273 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~ 345 (709)
+.......|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. ++... +..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 344556667777777777777776543 244567777777777777777777777776632 22222 455555
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHH
Q 039873 346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREA 422 (709)
Q Consensus 346 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 422 (709)
.+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666543 33445555556666666666666666655542 2334444444122223355555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcccc---HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873 423 LTLFQNMLAAEERPN-HVTFVGVLSACGHLGL---VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 423 ~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 498 (709)
++.|++..+. .|+ ...+..+...+...|+ +++|...++.+.+...-.|+.. -
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~--------------------- 217 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K--------------------- 217 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H---------------------
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h---------------------
Confidence 5555555552 233 2333333333333333 3334444433332211111100 0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873 499 STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554 (709)
Q Consensus 499 ~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 554 (709)
..-..+|..+...+...|++++|.+.++++++++|+++.....+..+....+
T Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 ----DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012466777788888999999999999999999999877777666554443
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.2e-11 Score=122.50 Aligned_cols=239 Identities=13% Similarity=-0.038 Sum_probs=168.7
Q ss_pred hCCCccHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873 213 ENECFRGGVEVLGKMVSGSVRW---DSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN 289 (709)
Q Consensus 213 ~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 289 (709)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3567788888888887753211 24467777778888888888888888888764 4567788888888888888888
Q ss_pred HHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873 290 AKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS 366 (709)
Q Consensus 290 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 366 (709)
|...|++..+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+++.|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888888754 35678888888888999999999999888764 455554555555556678888888888777765
Q ss_pred CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-
Q 039873 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRD-------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH- 438 (709)
Q Consensus 367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~- 438 (709)
. +++...+ .++..+...++.++|...+.+....+ ..+|..+...|...|++++|...|++.... .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 249 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF 249 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH
Confidence 4 3333333 36667777788888888888776432 467777888888888888888888888773 4532
Q ss_pred HHHHHHHHHHhccccHHHHHHHH
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYL 461 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~ 461 (709)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 222 33455667777766554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=1.4e-11 Score=120.49 Aligned_cols=196 Identities=10% Similarity=-0.009 Sum_probs=142.7
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC 448 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 448 (709)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666677777777777777777654 2356677777777888888888888888877642 23456677777777
Q ss_pred hccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFG 525 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a 525 (709)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877654 22444 3456777777888888888888877643 1223 467777788888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888778888888888888888888888887653
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=9.2e-11 Score=116.27 Aligned_cols=224 Identities=9% Similarity=-0.104 Sum_probs=114.2
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhHHhH
Q 039873 302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG----LSALRHGDLLHAHIEKSGFKEHLIVGNA 377 (709)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 377 (709)
..++..+...|...|++++|++.|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444555555555555555555554411 22233333333333 444444444444444433 3444445
Q ss_pred HHhHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039873 378 LINMYAK----GGNIEAANKVFSDMRY-RDIITWNAMICGYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSAC 448 (709)
Q Consensus 378 li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 448 (709)
+..+|.. .|++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 5666666666555432 244555556666665 666666666666666543 334444444445
Q ss_pred hc----cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 039873 449 GH----LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV-- 518 (709)
Q Consensus 449 ~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~-- 518 (709)
.. .+++++|...|+...+. + +...+..+..+|.+ .+++++|.+.+++.--..+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 44 56666666666665442 1 23445555555555 55666665555432111124445555555555
Q ss_pred --cCCchHHHHHHHHHHhcCCC
Q 039873 519 --HQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 519 --~g~~~~a~~~~~~~~~~~p~ 538 (709)
.+++++|.+.++++.+.+|+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 55666666666666665554
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=2.5e-11 Score=116.09 Aligned_cols=196 Identities=11% Similarity=0.017 Sum_probs=146.4
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA 447 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 447 (709)
+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44556677777778888888888887655 2356677778888888888888888888887742 3355677777777
Q ss_pred Hhcc-ccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCch
Q 039873 448 CGHL-GLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYG 523 (709)
Q Consensus 448 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~ 523 (709)
+... |++++|...++.+.+ .+..|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888765 233343 466777888888888888888887643 2223 3777788888888888888
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 524 FGRRIAEYILHMDP-NDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 524 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+|...++++++..| ++...+..+...+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888888888 7777888888888888888888888888764
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=1.3e-11 Score=128.03 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873 303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSA-LRHGDLLHAHIEKSGFKEHLIVGNALIN 380 (709)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~ 380 (709)
..|+.+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555555555555555555555555542 232 2334444445555554 555555555555544 345566677777
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cccHH
Q 039873 381 MYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGH-LGLVQ 455 (709)
Q Consensus 381 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~-~g~~~ 455 (709)
+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|++.|+++++. .| +...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777765 346678888888888888888888888888873 45 45577777777777 55546
Q ss_pred HH-----HHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 039873 456 EG-----FYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAG--LLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQ------ 520 (709)
Q Consensus 456 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g------ 520 (709)
+| +..++..++. .| +...|..+..+|.+.| ++++|.+.++++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4677776553 34 3567888888888877 58888888776644555 677888888887764
Q ss_pred ---CchHHHHHHHHH-HhcCCCCchhHHHHHHHhhh
Q 039873 521 ---NYGFGRRIAEYI-LHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 521 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 552 (709)
..++|+++++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999888888877766554
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=5.1e-11 Score=117.84 Aligned_cols=227 Identities=7% Similarity=-0.083 Sum_probs=180.3
Q ss_pred hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC----HhhHHHHH
Q 039873 236 SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RN----VVLWTAMV 309 (709)
Q Consensus 236 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li 309 (709)
...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778889999999999999999875 44566888999999999999999999998765 22 23488999
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHH-hHHHhcCCH
Q 039873 310 AACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALI-NMYAKGGNI 388 (709)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li-~~y~~~g~~ 388 (709)
..|...|++++|++.|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998753 2245678888899999999999999999988763 55667777777 5555 4699
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccccHH
Q 039873 389 EAANKVFSDMRY---RDIITWNAMICGYSHHGL---GREALTLFQNMLAAE-ERPNH------VTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 389 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~pd~------~t~~~ll~a~~~~g~~~ 455 (709)
++|...|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998763 346788888888888888 888999999987632 12432 35666777777788888
Q ss_pred HHHHHHHHHHH
Q 039873 456 EGFYYLNHLMK 466 (709)
Q Consensus 456 ~a~~~~~~~~~ 466 (709)
+|.+.++.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887765
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=1.1e-11 Score=120.40 Aligned_cols=170 Identities=14% Similarity=0.064 Sum_probs=83.6
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL 451 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 451 (709)
+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 3334444444444444444444433 1234445555555555555555555555555432 22334444555555555
Q ss_pred ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 039873 452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIA 529 (709)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~ 529 (709)
|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555555555555432 1123344555555555555555555554432 1112 3445555555555556666666666
Q ss_pred HHHHhcCCCCchhHHHHH
Q 039873 530 EYILHMDPNDVGTYILLS 547 (709)
Q Consensus 530 ~~~~~~~p~~~~~~~~l~ 547 (709)
+++++++|++...+..+.
T Consensus 217 ~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHCTTCHHHHHHHT
T ss_pred HHHHccCcchHHHHHHHH
Confidence 666665555554444443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=6.7e-11 Score=115.55 Aligned_cols=204 Identities=10% Similarity=-0.031 Sum_probs=144.5
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873 302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM 381 (709)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 381 (709)
...|..+...+...|++++|++.|+++.+.. | .+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 4667777778888888888888887776532 2 223344455555
Q ss_pred HHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHH
Q 039873 382 YAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEG 457 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 457 (709)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|+++|+++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666543 23455677777777777777788887777766334453 44666777777888888888
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 458 FYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 458 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
...++.+.+.. +.+...+..+...|.+.|++++|.+.++.. ...| +...|..+...+...|+.+.|.+.++++.+.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888876532 234667788888888888888888887753 2233 4777888888889999999999999999999
Q ss_pred CCCCchhH
Q 039873 536 DPNDVGTY 543 (709)
Q Consensus 536 ~p~~~~~~ 543 (709)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99876544
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.2e-10 Score=115.38 Aligned_cols=223 Identities=9% Similarity=-0.079 Sum_probs=191.5
Q ss_pred ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHH
Q 039873 337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMRY-RDIITWNAMIC 411 (709)
Q Consensus 337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 411 (709)
..++..+...+...|++++|.+.+....+. .+...+..+...|.. .|++++|...|++..+ .+..++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566677788889999999999999983 456778889999999 9999999999998764 47788999999
Q ss_pred HHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873 412 GYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH----LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL 483 (709)
Q Consensus 412 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 483 (709)
.|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+..+
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSL 155 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHH
Confidence 9999 999999999999999875 67788888888888 99999999999998773 3 56678888999
Q ss_pred HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh---
Q 039873 484 LSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK--- 552 (709)
Q Consensus 484 ~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 552 (709)
|.+ .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|+.+|.+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 988 99999999998854222467888888889999 9999999999999999876 5788999999999
Q ss_pred -cCCchhHHHHHHHHHhCCC
Q 039873 553 -EKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 553 -~g~~~~a~~~~~~m~~~~~ 571 (709)
.|++++|.+.+++..+.+.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987653
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=1.1e-11 Score=120.31 Aligned_cols=197 Identities=11% Similarity=0.060 Sum_probs=154.1
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
.....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667778888899999999999998753 467789999999999999999999999998853 335678888889
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~ 524 (709)
.+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987742 345678889999999999999999998754 2223 58889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999764
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=1.8e-11 Score=130.88 Aligned_cols=344 Identities=10% Similarity=-0.037 Sum_probs=220.0
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCc---HHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873 206 SVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDL---KLGLQVHSQMLKSDIEPDVFINSAMISMYG 282 (709)
Q Consensus 206 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 282 (709)
.+...+.+.|++++|+++|++..+.|- ...+..+...+...|+. ++|.+.++...+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999887653 33344444455556766 8888888888754 4555666666555
Q ss_pred hcC-----ChHHHHHHHHhccCC-CHhhHHHHHHHHHHcCCHh---HHHHHHHHHHhCCCCCCccchHHHHHHHhccCCh
Q 039873 283 KCG-----KFSNAKKVFEGLETR-NVVLWTAMVAACFQNEYFE---EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSAL 353 (709)
Q Consensus 283 ~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 353 (709)
..| +.++|...|++..++ +...+..|...|...+..+ ++.+.+.+....| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 554 678899988887654 4567778888887766544 3455555544443 334455566666666655
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC---CHHHHHHHHhhcCC---CChhhHHHHHHHHHHc----CChHHHH
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG---NIEAANKVFSDMRY---RDIITWNAMICGYSHH----GLGREAL 423 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 423 (709)
+.+..-.....+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..|...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 544444333333323334447888888999999 88899999887653 3344446677777554 6889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-H--hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-----CHHHHHH
Q 039873 424 TLFQNMLAAEERPNHVTFVGVLSA-C--GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG-----LLDEAEK 495 (709)
Q Consensus 424 ~~~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 495 (709)
+.|++.. .| +...+..+... + ...+++++|..+|+...+ .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999886 33 33444444444 3 458899999999998865 34 5667777888887 55 8999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh----cCCchhHHHHHHHHH
Q 039873 496 FMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK----EKRWDGVSKIRKLMK 567 (709)
Q Consensus 496 ~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 567 (709)
.|++.. .-++..+..|...|.. ..|.++|...++++.+.+ ++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 998776 5567777777766665 348899999999988754 45678888888875 458889999999888
Q ss_pred hCCC
Q 039873 568 VRKV 571 (709)
Q Consensus 568 ~~~~ 571 (709)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7764
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.36 E-value=3.1e-11 Score=115.12 Aligned_cols=191 Identities=16% Similarity=0.038 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873 269 PDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345 (709)
Q Consensus 269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 345 (709)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence 3444555555555666666666666655432 24455555555555566666666555555542 232
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc-----------CCHHHHHHHHhhcCC---CChhhHHHHHH
Q 039873 346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG-----------GNIEAANKVFSDMRY---RDIITWNAMIC 411 (709)
Q Consensus 346 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~---~~~~~~~~li~ 411 (709)
+...+..+...|.+. |++++|...|++..+ .+...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 222333333333333 555555555555431 23445555556
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873 412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (709)
.|...|++++|++.|++..+.. .+...+..+..++...|++++|...|+.+.+. .+.+...+..+..++.+.|+++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 6666666666666666665544 44555555555666666666666666655442 1123345555555555666666
Q ss_pred HHHHHHHh
Q 039873 492 EAEKFMRS 499 (709)
Q Consensus 492 ~A~~~~~~ 499 (709)
+|.+.+++
T Consensus 203 ~A~~~~~~ 210 (217)
T 2pl2_A 203 EAARAAAL 210 (217)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66555544
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=1e-10 Score=111.79 Aligned_cols=208 Identities=11% Similarity=0.004 Sum_probs=142.5
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873 301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN 380 (709)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 380 (709)
+...|..+...+...|++++|++.|+++.+.. | .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34566677777777777777777777766532 2 22334445555
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHH
Q 039873 381 MYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHH-GLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 381 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 455 (709)
.|...|++++|...|+++. ..+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5666666666666666543 23455677777777777 788888888877776333444 456677777778888888
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873 456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW--DVVAWHTLLNASRVHQNYGFGRRIAEYI 532 (709)
Q Consensus 456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~ 532 (709)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888877653 1233667778888888888888888887643 1223 5667777777788899999999999999
Q ss_pred HhcCCCCchhHHHH
Q 039873 533 LHMDPNDVGTYILL 546 (709)
Q Consensus 533 ~~~~p~~~~~~~~l 546 (709)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 88898887655443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=2.5e-11 Score=127.68 Aligned_cols=268 Identities=14% Similarity=0.057 Sum_probs=167.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH
Q 039873 270 DVFINSAMISMYGKCGKFSNAKKVFEGLET--R-N----VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV 342 (709)
Q Consensus 270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 342 (709)
....+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++......
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------- 78 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR--------- 78 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------
Confidence 344455555666666666666666665542 1 2 23455566666666666666666665442100
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHH
Q 039873 343 MLNSAAGLSALRHGDLLHAHIEKSGF-KEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICG 412 (709)
Q Consensus 343 ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~ 412 (709)
+.+- +....++..+...|...|++++|...|++... ++ ..++..+...
T Consensus 79 ----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 79 ----------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp ----------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 0010 01123445556666666666666666665442 11 2366667777
Q ss_pred HHHcCC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873 413 YSHHGL--------------------GREALTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQ 467 (709)
Q Consensus 413 ~~~~g~--------------------~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 467 (709)
|...|+ +++|++.+++.... +-.|. ..++..+...+...|++++|...++...+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777 77777777765431 11222 235666777778888888888888877653
Q ss_pred hCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 468 IGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRST----PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 468 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
..-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 322222 236777888888888888888876642 10112 456777778888889999999988888776
Q ss_pred CCCC------chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 536 DPND------VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 536 ~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4322 45777888899999999999998888765
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1e-11 Score=131.15 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccC---CCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873 273 INSAMISMYGKCGKFSNAKKVFEGLET---RNV----VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345 (709)
Q Consensus 273 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 345 (709)
.+..+...+...|++++|...|++..+ .+. ..|..+...|...|++++|+..|++..+..-
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------ 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------------ 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------------
Confidence 344455566667777777777766543 122 3566666666667777777776666543100
Q ss_pred HHhccCChhHHHHHHHHHHHhC-CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHH
Q 039873 346 SAAGLSALRHGDLLHAHIEKSG-FKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---------RDIITWNAMICGYSH 415 (709)
Q Consensus 346 ~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~ 415 (709)
+.+ .+....++..+...|...|++++|...|++... ....+|..+...|..
T Consensus 118 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 118 -------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 000 011223445555566666666666666655431 123356666677777
Q ss_pred cCC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC
Q 039873 416 HGL-----------------GREALTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG 473 (709)
Q Consensus 416 ~g~-----------------~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 473 (709)
.|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|...++...+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 777 77777777665431 11121 235666667777888888888888777553221122
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---
Q 039873 474 ----LEHYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN--- 538 (709)
Q Consensus 474 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--- 538 (709)
...+..+...|...|++++|.+.+++.- . ..+ ..+|..+...+...|++++|...+++++++.+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2367778888888888888888765431 0 111 456777888888999999999999988876432
Q ss_pred ---CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 539 ---DVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 539 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
....+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 234788899999999999999999998865
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=5.9e-11 Score=109.81 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=124.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI 480 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 480 (709)
+...|..+...|.+.|++++|++.|++..+ +.|+ ..++..+...+.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 445677777777777777888888877777 3453 456777777777788888888877776553 22334566667
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873 481 VGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG 558 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 558 (709)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|++.++++++++|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77778888888888776643 2233 477788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 039873 559 VSKIRKLMKVR 569 (709)
Q Consensus 559 a~~~~~~m~~~ 569 (709)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=5.2e-11 Score=121.39 Aligned_cols=198 Identities=15% Similarity=0.056 Sum_probs=139.5
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGL--------------------GREA 422 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 422 (709)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455666677777777777777766541 12 2366777777777777 7888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 039873 423 LTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 423 ~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 493 (709)
++.+++.... +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8877776532 11121 235666777788888899988888887653222222 23677888889999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------chhHHHHHHHhhhcCCchhH
Q 039873 494 EKFMRST----PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND------VGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 494 ~~~~~~~----~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 559 (709)
.+.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8887643 11112 5567778888999999999999999988764322 34788999999999999999
Q ss_pred HHHHHHHHhC
Q 039873 560 SKIRKLMKVR 569 (709)
Q Consensus 560 ~~~~~~m~~~ 569 (709)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.8e-11 Score=131.75 Aligned_cols=208 Identities=11% Similarity=-0.015 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCH-HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNI-EAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNM 429 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (709)
+.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 34566777777788888888 88888888765 235678899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc--------CCHHH
Q 039873 430 LAAEERPNHVTFVGVLSACGHL---------GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA--------GLLDE 492 (709)
Q Consensus 430 ~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 492 (709)
.+ +.|+...+..+...+... |++++|...++.+.+.. +.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88 568878888888889888 99999999999987642 33467888899999888 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 493 AEKFMRST-PVKW----DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 493 A~~~~~~~-~~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
|.+.|++. .+.| +...|..+...+...|++++|++.++++++++|++...+..+..++...|++++|.+.+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998754 3345 68899999999999999999999999999999999999999999999999999998765444
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=6.4e-11 Score=122.69 Aligned_cols=224 Identities=10% Similarity=0.048 Sum_probs=189.5
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 039873 339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN-IEAANKVFSDMRY---RDIITWNAMICGYS 414 (709)
Q Consensus 339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~---~~~~~~~~li~~~~ 414 (709)
.|..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++.. .+...|+.+...|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45566667788899999999999999876 5678889999999999997 9999999998873 47789999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHH
Q 039873 415 HHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK-AGLLDE 492 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 492 (709)
..|++++|+..|+++++ +.| +...|..+..++...|++++|+..++.+++. -+-+...|+.+..+|.+ .|..++
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999 456 5668999999999999999999999999774 22356789999999999 677677
Q ss_pred HH-----HHHHh-CCCCCC-HHHHHHHHHHHHhcC--CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC---------
Q 039873 493 AE-----KFMRS-TPVKWD-VVAWHTLLNASRVHQ--NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK--------- 554 (709)
Q Consensus 493 A~-----~~~~~-~~~~pd-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 554 (709)
|. +.+++ +.+.|+ ...|..+...+...| ++++|.+.++++ +.+|+++..+..|+++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 73 55553 334555 889999999898888 689999999998 889999999999999999875
Q ss_pred CchhHHHHHHHH-Hh
Q 039873 555 RWDGVSKIRKLM-KV 568 (709)
Q Consensus 555 ~~~~a~~~~~~m-~~ 568 (709)
.+++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999998 54
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=1.4e-08 Score=112.36 Aligned_cols=424 Identities=8% Similarity=0.004 Sum_probs=261.2
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCC---chHHHHHHHHHHHhCC-CCchhH
Q 039873 97 RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGR---GAEGRQCHGYVFKSGL-VFCKYV 172 (709)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~ 172 (709)
.|..+|..++..+.+.+.++.+..+|+.+.. -.+.....|..-+..-.+.++ .+.+..+|+..+.... .|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3677788888888888888888888888862 234455566666666666677 8888888888777642 366667
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHhhCC------CC-CcccHHHHHHHHHh---------CCCccHHHHHHHHHH
Q 039873 173 RNALVELYTKCLDV--------EMAKRLLDLLP------GY-DVFEYNSVLNGLIE---------NECFRGGVEVLGKMV 228 (709)
Q Consensus 173 ~~~li~~y~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~ 228 (709)
|...+....+.++. +...++|+... .+ +...|...+.-... +++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77766655554443 22335665421 12 23456666654332 234556667777766
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc-------c---
Q 039873 229 SGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL-------E--- 298 (709)
Q Consensus 229 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-------~--- 298 (709)
......-..+|..........+ ...+.+++.+. ..+++.|...+.++ .
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 4211111112211111100000 11121211110 01122233333221 0
Q ss_pred -C----------C--------CHhhHHHHHHHHHHcC-------CHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873 299 -T----------R--------NVVLWTAMVAACFQNE-------YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA 352 (709)
Q Consensus 299 -~----------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 352 (709)
. | ....|...|.---.++ ..+.+..+|++.+.. ..-+...|.....-+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 0 0234555554333332 123455677777653 22244556566666667788
Q ss_pred hhHHH-HHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-------------C------------ChhhH
Q 039873 353 LRHGD-LLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-------------R------------DIITW 406 (709)
Q Consensus 353 ~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------------~------------~~~~~ 406 (709)
.+.|. .+++..+.. ++.+..++-.++..+-+.|+++.|.++|+++.. | ....|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 999999875 356677788889999999999999999998763 2 12368
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 407 NAMICGYSHHGLGREALTLFQNMLAA-E-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
...+....+.|..+.|..+|.+..+. + ..+......+.+.- ...++++.|..+|+..++.++ -+...+...++..
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe 514 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFA--TDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHH
Confidence 88888888899999999999999885 2 12222222222322 223568999999999988644 3455778889999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873 485 SKAGLLDEAEKFMRST-PVKW----DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY 550 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~-~~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 550 (709)
...|+.+.|+.+|+.. ...| ....|...+.--..+|+.+.+..+.+++.+..|++. ....+++=|
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 9999999999999854 2223 257899999999999999999999999999999864 344444444
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=9.6e-09 Score=113.65 Aligned_cols=412 Identities=10% Similarity=0.001 Sum_probs=224.3
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCC---hhHHHHHHHHhhhCCC-CCCChhhHH
Q 039873 67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQ--R-NVVSYSSLMTWYLHNGF---LLETLKLFKNMVSGDN-LEPNEYIFS 139 (709)
Q Consensus 67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g-~~p~~~t~~ 139 (709)
|...|..++..+.+.+.++.++.+|+++.. | ....|...+..-.+.++ .+.+..+|++.. ... ..|+...|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal-~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL-SKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT-CSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH-HhcCCCCCHHHHH
Confidence 566666666666666666666666666543 2 23345555555555555 666666666665 221 135555555
Q ss_pred HHHHHHhcCCCc--------hHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCChHHHHHHHhhCCC-
Q 039873 140 IVLSSCSRSGRG--------AEGRQCHGYVFK-SGL-VFC-KYVRNALVELYTK---------CLDVEMAKRLLDLLPG- 198 (709)
Q Consensus 140 ~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~- 198 (709)
.-+.-..+.++. +..+++|+.++. .|. .++ ..+|...+..... .++++.++++|++...
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 555444333332 223355555443 244 332 3455555544321 2345566666665443
Q ss_pred C--Cc-ccHH---HHHHHH--------H--hCCCccHHHHHHHHHHh--CCCC---------------C-----C---hh
Q 039873 199 Y--DV-FEYN---SVLNGL--------I--ENECFRGGVEVLGKMVS--GSVR---------------W-----D---SV 237 (709)
Q Consensus 199 ~--~~-~~~~---~li~~~--------~--~~g~~~~A~~l~~~m~~--~g~~---------------p-----~---~~ 237 (709)
| +. ..|. .+...+ . ....++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 1 10 1121 111110 0 00122333344443221 1110 1 0 01
Q ss_pred hHHHHHHHHhcCC-------CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH-HHHHhccC---CCHhhHH
Q 039873 238 TYVNAFGLSASLK-------DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAK-KVFEGLET---RNVVLWT 306 (709)
Q Consensus 238 t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~---~~~~~~~ 306 (709)
.|...+.---..+ ..+....+|++++..- +-+..+|-..+..+.+.|+.++|. .+|++... .+...|-
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl 382 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2333333322221 1233456677777653 456677777777777778877775 77776543 3555677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCC---------CCCC------------ccchHHHHHHHhccCChhHHHHHHHHHHH
Q 039873 307 AMVAACFQNEYFEEALNLFCGMEYEA---------IRPN------------EFTFAVMLNSAAGLSALRHGDLLHAHIEK 365 (709)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~g---------~~pd------------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 365 (709)
..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|.++.|+.++..+.+
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777888888888888776531 0132 12466666666667778888888888877
Q ss_pred h-CCCCChhHHhHHHhHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CH
Q 039873 366 S-GFKEHLIVGNALINMYAKGG-NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP--NH 438 (709)
Q Consensus 366 ~-g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~ 438 (709)
. + .....+|...+.+-.++| +.+.|.++|+...+ .+...|...+......|+.+.|..+|++.......+ ..
T Consensus 463 ~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 5 2 122333433333444444 47888888887653 355667777777777888888888888877643222 12
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
..|...+.--...|+.+.+..+.+.+.+.. |+......+++-|
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~~f~~ry 584 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHHHHHHHh
Confidence 356666666667788888888888876653 3333444444444
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.6e-10 Score=121.45 Aligned_cols=153 Identities=13% Similarity=0.011 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LE 475 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 475 (709)
+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 455555555555666666665555543100 111 124555556666666666666666665442211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCch
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRSTP----VKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMD------PNDVG 541 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 541 (709)
.+..+...|.+.|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 56677777777777777777665320 0112 5567777788888899999999998887753 22345
Q ss_pred hHHHHHHHhhhcCCch
Q 039873 542 TYILLSNMYAKEKRWD 557 (709)
Q Consensus 542 ~~~~l~~~~~~~g~~~ 557 (709)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 6778888888888764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=1.1e-10 Score=119.05 Aligned_cols=133 Identities=14% Similarity=0.028 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LE 475 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 475 (709)
++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|...++.......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444445555555555555555555443100 011 124455555556666666666666555432211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
.+..+...|...|++++|.+.+++.- . .++ ..++..+...+...|++++|...+++++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 55666667777777777776655320 0 011 44666777778888888888888888887654
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=8.4e-11 Score=124.15 Aligned_cols=133 Identities=12% Similarity=-0.004 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LE 475 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 475 (709)
+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++.......-..+ ..
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555556666666666666655544210 011 124555666666667777777666665443211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP 537 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 537 (709)
.+..+...|.+.|++++|.+.+++.- + .++ ..++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 56677777777788877777765431 0 011 44667777888899999999999999988764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.22 E-value=2.9e-10 Score=105.12 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=141.3
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 446 (709)
.+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.+++..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 456788999999999999999999999876 3467789999999999999999999999998842 334556777777
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~ 524 (709)
.+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998763 2334678889999999999999999998754 3344 48889999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 039873 525 GRRIAEYILHMDPNDV 540 (709)
Q Consensus 525 a~~~~~~~~~~~p~~~ 540 (709)
|++.++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998763
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=1.8e-10 Score=128.92 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=125.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHH
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCI 480 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 480 (709)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|.+.|++.++. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45677777777788888888888887777 4564 457777777788888888888888777653 343 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873 481 VGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG 558 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 558 (709)
..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|++.++++++++|+++..+..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888877643 34454 77888888888999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHh
Q 039873 559 VSKIRKLMKV 568 (709)
Q Consensus 559 a~~~~~~m~~ 568 (709)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888877653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=5.1e-10 Score=117.01 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCC-CCC----ccchHHHHHHHhccCChhHHHHHHHHHHHhC--C----CCChhHHh
Q 039873 308 MVAACFQNEYFEEALNLFCGMEYEAI-RPN----EFTFAVMLNSAAGLSALRHGDLLHAHIEKSG--F----KEHLIVGN 376 (709)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~----~~~~~~~~ 376 (709)
....+...|++++|+..|++..+.-. .+| ..++..+...+...|+++.|...+..+.+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445566777777777766654210 111 1234444444455555555555554444321 0 00123444
Q ss_pred HHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 039873 377 ALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN-HVTFV 442 (709)
Q Consensus 377 ~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~ 442 (709)
.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555555555555555554431 11 124555555555555555555555555441 11122 23444
Q ss_pred HHHHHHhccccHHHHHHHHHHHH
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLM 465 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~ 465 (709)
.+...+...|++++|...++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=5e-11 Score=120.32 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=122.3
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhC-------CCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh------CC
Q 039873 302 VVLWTAMVAACFQNEYFEEALNLFCGMEYE-------AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS------GF 368 (709)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------g~ 368 (709)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467888888899999999999999888752 11112233444444555555555555555554432 10
Q ss_pred -CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 039873 369 -KEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAA------EERPN-HVT 440 (709)
Q Consensus 369 -~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t 440 (709)
+.... +|..+...|...|++++|++.|++..+. +-.|+ ...
T Consensus 107 ~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11223 4444455555555555555555554432 11122 224
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhh-----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCC
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQI-----GIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRSTP----------VKW 504 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p 504 (709)
+..+...+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.+++.- ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555555566666665555554421 1111 12345555566666666666665554321 011
Q ss_pred C-------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 505 D-------VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 505 d-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
. ...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112222223344556667777777777777777778888888889889999999888887764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=4.4e-09 Score=106.15 Aligned_cols=184 Identities=9% Similarity=0.015 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 039873 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DII-TWNAMICGYSHHGLGREALTLFQNM 429 (709)
Q Consensus 354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 429 (709)
++|..+++.+++.-.+.+...+..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666531134455677777777777777777777777653 3 233 6777777777888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHH-hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC
Q 039873 430 LAAEERPNHVTFVGVLSAC-GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PVKW 504 (709)
Q Consensus 430 ~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p 504 (709)
.+.. +++...|....... ...|++++|..+|+..++..+ -+...|..+++.+.+.|++++|+.+|++. .+.|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 7743 22333443333222 235788888888887766432 24567777788888888888888887643 1233
Q ss_pred --CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 505 --DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 505 --d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
....|..++.....+|+.+.|..+++++++..|++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 366777777777778888888888888888877654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=9.8e-11 Score=118.13 Aligned_cols=239 Identities=11% Similarity=0.056 Sum_probs=143.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhccC--------C---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC------
Q 039873 269 PDVFINSAMISMYGKCGKFSNAKKVFEGLET--------R---NVVLWTAMVAACFQNEYFEEALNLFCGMEYE------ 331 (709)
Q Consensus 269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 331 (709)
.+..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999998764 2 2467888999999999999999999998753
Q ss_pred CCCC-CccchHHHHHHHhccCChhHHHHHHHHHHHh------CC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh
Q 039873 332 AIRP-NEFTFAVMLNSAAGLSALRHGDLLHAHIEKS------GF-KEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI 403 (709)
Q Consensus 332 g~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 403 (709)
+-.| ...++..+...+...|++++|...+..+.+. +- +....++..+...|.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------ 166 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ------------------ 166 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT------------------
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc------------------
Confidence 2122 2345666777778888888888888777653 11 11223344444444444
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhh------CC
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAA------EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI------GI 470 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~ 470 (709)
|++++|+++|+++... +-.|+ ..++..+...+...|++++|..+++.+.+.. ..
T Consensus 167 -------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 167 -------------GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4455555444444432 11222 2244445555555555555555555554311 01
Q ss_pred CCC-------hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 471 VPG-------LEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 471 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
.+. ...+..+...+...+.+.+|...++... ..|+ ..+|..+...+...|++++|...+++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 1122233344445556666666665543 2233 677888889999999999999999999988764
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=6.1e-09 Score=105.12 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc--chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF--TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM 381 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 381 (709)
.|..++..+.+.|++++|.++|++..+ +.|+.. .|..+...+.+.|+++.|..++..+++.+ +.+..++......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 444444444444444444444444443 123221 33444444444444444444444444432 1222233222222
Q ss_pred HH-hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccccH
Q 039873 382 YA-KGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPN--HVTFVGVLSACGHLGLV 454 (709)
Q Consensus 382 y~-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~a~~~~g~~ 454 (709)
.. ..|+.++|..+|++..+ .+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++......|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 21 24677777777766542 355677777777777777777777777777752 3553 44566666666777777
Q ss_pred HHHHHHHHHHHHhhC
Q 039873 455 QEGFYYLNHLMKQIG 469 (709)
Q Consensus 455 ~~a~~~~~~~~~~~~ 469 (709)
++|..+++.+.+..+
T Consensus 258 ~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 258 ASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcc
Confidence 788777777766433
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=7.3e-10 Score=115.83 Aligned_cols=225 Identities=9% Similarity=-0.024 Sum_probs=170.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHh----CCCC-ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC-----hhhHH
Q 039873 343 MLNSAAGLSALRHGDLLHAHIEKS----GFKE-HLIVGNALINMYAKGGNIEAANKVFSDMRY-----RD-----IITWN 407 (709)
Q Consensus 343 ll~~~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~-----~~~~~ 407 (709)
....+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...|.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344567889999999999999864 2111 346788899999999999999998887652 21 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhh---CC-CCChHHHH
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI---GI-VPGLEHYT 478 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 478 (709)
.+...|...|++++|++.|++.....- .++ ..++..+...+...|++++|...++...+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999875311 122 2378888889999999999999999886621 33 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873 479 CIVGLLSKAGLLDEAEKFMRST-PV-----KWD-VVAWHTLLNASRVHQN---YGFGRRIAEYILHMDPNDVGTYILLSN 548 (709)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~~-~~-----~pd-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 548 (709)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999997643 11 122 2334566667778888 67777777665 223444567889999
Q ss_pred HhhhcCCchhHHHHHHHHHh
Q 039873 549 MYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 549 ~~~~~g~~~~a~~~~~~m~~ 568 (709)
+|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=1.6e-09 Score=99.73 Aligned_cols=158 Identities=14% Similarity=0.013 Sum_probs=93.2
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039873 374 VGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH 450 (709)
Q Consensus 374 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 450 (709)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.++++.+. .|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~-------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP-------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--------------
Confidence 344445555555555555555555442 23344445555555555555555555554442 12
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHH
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNASRVHQNYGFGRRI 528 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~a~~~ 528 (709)
.+...+..+...|...|++++|.+.+++. .. ..+...|..+...+...|++++|...
T Consensus 74 ---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 74 ---------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 22334444455555555555555554432 11 22456666677777777777778777
Q ss_pred HHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 529 AEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 529 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++++++..|.++..+..++.+|...|++++|.+.++...+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8777777777777778888888888888888888777764
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=4.7e-09 Score=100.69 Aligned_cols=203 Identities=8% Similarity=-0.010 Sum_probs=131.6
Q ss_pred CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 039873 336 NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICG 412 (709)
Q Consensus 336 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 412 (709)
|...+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|...|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 34556666666777788888888888777766435666666677777778888888877776652 345577777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC---hHHHHHHH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPN-H-------VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG---LEHYTCIV 481 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 481 (709)
|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|...|+.++ .+.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 77888888888888777763 443 3 335556666677777777777777764 34554 45566666
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873 482 GLLSKAGLL--DEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY 550 (709)
Q Consensus 482 ~~~~~~g~~--~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 550 (709)
..|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|++..+...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666655543 2222221 12233333322 23345678899999999999998877766665543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=4.2e-08 Score=101.82 Aligned_cols=194 Identities=12% Similarity=0.030 Sum_probs=132.4
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHH
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRY----------R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEER--P--NHV 439 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--d~~ 439 (709)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++.....-. + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44566667777777777777766541 1 1235566777788888888888888887763211 1 124
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT-----CIVGLLSKAGLLDEAEKFMRSTP-VKWD-----VVA 508 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~pd-----~~~ 508 (709)
++..+...+...|++++|...++.......-......+. .++..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566677778888999999988888765322211111221 23455778999999999988652 1121 335
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCC-----C-chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHMDPN-----D-VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+..+...+...|++++|...++++.+..+. + ...+..++.+|...|++++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 667777888899999999999988765321 1 23677788899999999999999988765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=5.9e-09 Score=95.77 Aligned_cols=167 Identities=11% Similarity=-0.000 Sum_probs=124.1
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 039873 338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYS 414 (709)
Q Consensus 338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 414 (709)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566777889999999999999887654 4567888999999999999999999999876 346778888899999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
..|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+.. |
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~---------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---P---------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---c----------------------
Confidence 9999999999999988752 3345566666667777777777777777665421 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 495 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
.+..+|..+...+...|++++|...++++++..|++.
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 1345555566666666666667666666666666544
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=3.4e-08 Score=102.81 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=28.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCC-CCCc----cchHHHHHHHhccCChhHHHHHHHHHH
Q 039873 309 VAACFQNEYFEEALNLFCGMEYEAI-RPNE----FTFAVMLNSAAGLSALRHGDLLHAHIE 364 (709)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~ 364 (709)
...+...|++++|+..|++..+.-. .+|. .++..+...+...|+++.|...+..+.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3345567777777777777654311 1221 233334444445555555555444443
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=4.4e-09 Score=109.59 Aligned_cols=300 Identities=9% Similarity=-0.010 Sum_probs=199.2
Q ss_pred CCchHHHHHHHHHH--HhcCChHHHHHHHHhccC--------CCHhhHHHHHHH--HHHcCCHhHHH---------HHHH
Q 039873 268 EPDVFINSAMISMY--GKCGKFSNAKKVFEGLET--------RNVVLWTAMVAA--CFQNEYFEEAL---------NLFC 326 (709)
Q Consensus 268 ~~~~~~~~~li~~y--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~ 326 (709)
.|+..+.+.|-+.| .+.+++++|..+++++.+ .++..|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45566666666666 677778888777776432 123333333321 11112222222 5555
Q ss_pred HHHhCCCCCCc-c---chHHHHHHHhccCChhHHHHHHHHHHHhC--CC---CChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873 327 GMEYEAIRPNE-F---TFAVMLNSAAGLSALRHGDLLHAHIEKSG--FK---EHLIVGNALINMYAKGGNIEAANKVFSD 397 (709)
Q Consensus 327 ~m~~~g~~pd~-~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~ 397 (709)
.+.......+. . .+......+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 11223334578899999999999988642 11 1245778899999999999999988877
Q ss_pred cCC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 398 MRY-----RD-----IITWNAMICGYSHHGLGREALTLFQNMLAA----EERP-NHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 398 ~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
..+ ++ ..+++.+...|...|++++|++.|++..+. |-.+ ...++..+...+...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 541 12 347888999999999999999999998762 1111 13467778888999999999999999
Q ss_pred HHHHhh---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---chHHHHHH
Q 039873 463 HLMKQI---GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PV--KWD-VVAWHTLLNASRVHQN---YGFGRRIA 529 (709)
Q Consensus 463 ~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~pd-~~~~~~ll~~~~~~g~---~~~a~~~~ 529 (709)
...... +.+.....+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +++|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887621 22333667888999999999999999998743 11 233 3445555556667777 67777766
Q ss_pred HHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 530 EYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 530 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 662 12233445778999999999999999999998864
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.05 E-value=4.5e-09 Score=112.93 Aligned_cols=200 Identities=10% Similarity=-0.017 Sum_probs=123.4
Q ss_pred CchHHHHHHHHHHHhcCCh-HHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH
Q 039873 269 PDVFINSAMISMYGKCGKF-SNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML 344 (709)
Q Consensus 269 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 344 (709)
.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3455566666666666666 666666665432 24566677777777777777777777776654 24434444444
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc-----
Q 039873 345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHH----- 416 (709)
Q Consensus 345 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~----- 416 (709)
..+...+. .....+.|++++|...|++.. ..+...|..+...|...
T Consensus 178 ~~~~~~~~--------------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 178 MVLRQLQT--------------------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHTTCCC--------------------------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc--------------------------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Confidence 44444400 000001144455555554433 22445566666666666
Q ss_pred ---CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873 417 ---GLGREALTLFQNMLAAEERP----NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL 489 (709)
Q Consensus 417 ---g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 489 (709)
|++++|++.|++..+. .| +...+..+..++...|++++|.+.|+...+.. +.+...+..+..++...|+
T Consensus 232 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 7788888888887773 45 56677778888888888888888888876532 2234567788888888888
Q ss_pred HHHHHHHHHhC
Q 039873 490 LDEAEKFMRST 500 (709)
Q Consensus 490 ~~~A~~~~~~~ 500 (709)
+++|.+.+.++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88888877766
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=6.9e-09 Score=99.48 Aligned_cols=191 Identities=14% Similarity=-0.002 Sum_probs=119.4
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcC---C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMR---Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGV 444 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 444 (709)
.|+..+..+...|.+.|++++|...|++.. . ++...|..+...|...|++++|++.|++..+ ..|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 345666667777777777777777777654 2 5566666677777777777777777777776 4454 3466666
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 039873 445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGL-----EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD---VVAWHTLLNA 515 (709)
Q Consensus 445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd---~~~~~~ll~~ 515 (709)
...+...|++++|...++...+..+-.+.. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 677777777777777777776532222211 34666666777777777777776643 34454 3444555445
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 516 SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 516 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+.. .+...++++..+.+.+...|..+. ....|.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 432 344555666666655544443332 33455669999999888763
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=1.4e-07 Score=97.88 Aligned_cols=221 Identities=9% Similarity=-0.085 Sum_probs=101.2
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCcHHHHHHHHHHHHcCC-CCc----hHHHHHHHHH
Q 039873 210 GLIENECFRGGVEVLGKMVSGSVRWDSV----TYVNAFGLSASLKDLKLGLQVHSQMLKSDI-EPD----VFINSAMISM 280 (709)
Q Consensus 210 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~ 280 (709)
.+...|++++|...+++........+.. .+..+...+...|+++.|.+.+...++..- ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555666666555554432111111 223333444445555555555555443210 001 1223445555
Q ss_pred HHhcCChHHHHHHHHhccC----------C-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC--CC--ccchHHHHH
Q 039873 281 YGKCGKFSNAKKVFEGLET----------R-NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIR--PN--EFTFAVMLN 345 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd--~~t~~~ll~ 345 (709)
|...|++++|...+++... + ....+..+...+...|++++|...+++....... +. ..++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 6666666666665554431 0 1123444555566666666666666665432111 10 112333344
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCC-hhHHh-----HHHhHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHH
Q 039873 346 SAAGLSALRHGDLLHAHIEKSGFKEH-LIVGN-----ALINMYAKGGNIEAANKVFSDMRYRD-------IITWNAMICG 412 (709)
Q Consensus 346 ~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~-----~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~ 412 (709)
.+...|++++|...+.......-.++ ...+. ..+..+...|++++|...+++...++ ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 44455555555555555443211111 00111 22233556666666666666554321 1134445555
Q ss_pred HHHcCChHHHHHHHHHHH
Q 039873 413 YSHHGLGREALTLFQNML 430 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~ 430 (709)
+...|++++|...+++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 566666666666665554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=8.4e-09 Score=102.02 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=155.1
Q ss_pred hccCChhHHHHHHHHHHHh-------CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHH
Q 039873 348 AGLSALRHGDLLHAHIEKS-------GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----------RDIITWNAM 409 (709)
Q Consensus 348 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~l 409 (709)
...|+++.|...+...++. ..+....++..+...|...|++++|...|++... ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888887777652 2233466788899999999999999999987652 134578889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhh-----CCCC-ChHH
Q 039873 410 ICGYSHHGLGREALTLFQNMLAA------EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI-----GIVP-GLEH 476 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 476 (709)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++.+.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11233 4577888889999999999999999987631 1122 2467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCchHH------HHHHHHHHhcCCCC
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRSTP----------VKWD-VVAWHTLLNASRVHQNYGFG------RRIAEYILHMDPND 539 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~~----------~~pd-~~~~~~ll~~~~~~g~~~~a------~~~~~~~~~~~p~~ 539 (709)
+..+...|.+.|++++|.+.+++.- ..+. ...|..+.......+....+ ...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999876431 1222 33344444444433333222 22222222233555
Q ss_pred chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 540 VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998765
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=5.7e-09 Score=116.84 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=139.2
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVL 445 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 445 (709)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3467788899999999999999999998762 4577899999999999999999999999988 5675 56888999
Q ss_pred HHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCc
Q 039873 446 SACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNY 522 (709)
Q Consensus 446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~ 522 (709)
.++...|++++|.+.|++.++. .| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998763 44 4678999999999999999999998753 44565 88899999999999999
Q ss_pred hHHHHHHHHHHhcCC
Q 039873 523 GFGRRIAEYILHMDP 537 (709)
Q Consensus 523 ~~a~~~~~~~~~~~p 537 (709)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887643
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=3e-08 Score=99.10 Aligned_cols=164 Identities=9% Similarity=-0.080 Sum_probs=94.4
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 039873 374 VGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHH-GLGREALTLFQNMLAAEERPN------ 437 (709)
Q Consensus 374 ~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd------ 437 (709)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|++.|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 344455555555555555555554431 11 23566677777775 7888888777777652 221
Q ss_pred -HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---
Q 039873 438 -HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-----EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVV--- 507 (709)
Q Consensus 438 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~--- 507 (709)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356667777777788888888777776532222221 14566677777778888887777653 3334311
Q ss_pred ---HHHHHHHHHH--hcCCchHHHHHHHHHHhcCCCC
Q 039873 508 ---AWHTLLNASR--VHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 508 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
.+..++.++. ..++++.|+..++++.+++|..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444553 2345667777776666666644
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=2.3e-08 Score=99.98 Aligned_cols=200 Identities=9% Similarity=-0.059 Sum_probs=145.6
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHHcCChHHH
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-------R--DIITWNAMICGYSHHGLGREA 422 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 422 (709)
++++|...+..+ ...|...|++++|...|.+... + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 3467889999999998887642 1 146899999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHH
Q 039873 423 LTLFQNMLAAEE---RPN--HVTFVGVLSACGHL-GLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDE 492 (709)
Q Consensus 423 ~~~~~~m~~~g~---~pd--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 492 (709)
+..|++...... .+. ..++..+...+... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876211 111 34788888899986 9999999999998764321111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh-----HHHHHHHhh--hcCCc
Q 039873 493 AEKFMRST-PVKWD---V-----VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT-----YILLSNMYA--KEKRW 556 (709)
Q Consensus 493 A~~~~~~~-~~~pd---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 556 (709)
|.+.|++. ...|+ . ..|..+...+...|+++.|+..+++.++++|..... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99998753 12222 1 156777778899999999999999999999875442 345566664 55778
Q ss_pred hhHHHHHHHH
Q 039873 557 DGVSKIRKLM 566 (709)
Q Consensus 557 ~~a~~~~~~m 566 (709)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888877554
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=1.9e-07 Score=91.43 Aligned_cols=183 Identities=7% Similarity=-0.050 Sum_probs=126.3
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHH
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-D---IITWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN-HVTF 441 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~~t~ 441 (709)
.+...+..+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++...... .|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666677778888888888888887763 3 2 45677777888888888888888888877421 112 3355
Q ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 039873 442 VGVLSACGH--------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLL 513 (709)
Q Consensus 442 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll 513 (709)
..+..++.. .|++++|...|+.+++..+-.+. ...++..+....+.+ ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 556666666 78888888888887765332222 222211111100000 11245667
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhhhc----------CCchhHHHHHHHHHhC
Q 039873 514 NASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYAKE----------KRWDGVSKIRKLMKVR 569 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 569 (709)
..+...|+++.|+..++++++..|++ +..+..++.+|... |++++|...++.+.+.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 78899999999999999999999874 45788899999877 9999999999998764
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.83 E-value=8.6e-08 Score=94.64 Aligned_cols=206 Identities=11% Similarity=0.053 Sum_probs=117.1
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873 302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM 381 (709)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 381 (709)
..+|..+...|...|++++|+..|++..+... .......+....++..+...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIRE----------------------------KTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----------------------------HHcCCcchHHHHHHHHHHHH
Confidence 34566666677777777777777766653200 00000001123344555556
Q ss_pred HHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHH
Q 039873 382 YAKGGNIEAANKVFSDMRY----------R-DIITWNAMICGYSHHGLGREALTLFQNMLAA------EERPN-HVTFVG 443 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ 443 (709)
|...|++++|...|++... | ...+|..+...|...|++++|++.|++.... +-.|+ ..++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6666666666666555431 1 2346667777777778888888877777653 11332 346777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhh------CCCCC-hHHHHHHHHHHHhcC------CHHHHHHHHHhCCCC-CC-HHH
Q 039873 444 VLSACGHLGLVQEGFYYLNHLMKQI------GIVPG-LEHYTCIVGLLSKAG------LLDEAEKFMRSTPVK-WD-VVA 508 (709)
Q Consensus 444 ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~-pd-~~~ 508 (709)
+...+...|++++|..+++.+.+.. ...+. ...+..+...+...+ .+.++...++..... |+ ..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7778888888888888888776531 11222 223434444443333 344444455554322 32 567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHM 535 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 535 (709)
|..+...+...|++++|...+++++++
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888999999999999999998875
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.80 E-value=1.5e-07 Score=92.11 Aligned_cols=199 Identities=13% Similarity=0.005 Sum_probs=139.3
Q ss_pred ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C----ChhhHH
Q 039873 337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEH---LIVGNALINMYAKGGNIEAANKVFSDMRY--R----DIITWN 407 (709)
Q Consensus 337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~----~~~~~~ 407 (709)
...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3455566677889999999999999999865 333 56788899999999999999999998763 3 234677
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH
Q 039873 408 AMICGYSH--------HGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT 478 (709)
Q Consensus 408 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 478 (709)
.+..+|.. .|++++|+..|++.... .|+.. ..... ..+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 78888888 99999999999999984 45432 21111 111111000 011255
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCch--
Q 039873 479 CIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVH----------QNYGFGRRIAEYILHMDPNDVG-- 541 (709)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 541 (709)
.+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888999999999887754 11233 45666677777655 8889999999999999998753
Q ss_pred -hHHHHHHHhhhcCCch
Q 039873 542 -TYILLSNMYAKEKRWD 557 (709)
Q Consensus 542 -~~~~l~~~~~~~g~~~ 557 (709)
.+..+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3344444554444443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.79 E-value=2.5e-07 Score=79.44 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
.|..+...|...|++++|+++|+++...+ +.+...+..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 45556666666666777777666666532 223445555555555566666666666555432 1
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873 485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK 564 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 564 (709)
..+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344555555566666666666666666666666666666667777777777777777776
Q ss_pred HHHh
Q 039873 565 LMKV 568 (709)
Q Consensus 565 ~m~~ 568 (709)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=3.4e-07 Score=87.42 Aligned_cols=181 Identities=12% Similarity=-0.007 Sum_probs=119.6
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRY--RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV----TF 441 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~ 441 (709)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|++.|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566778888889999888888763 32 246777888888888888898888888874 34321 33
Q ss_pred HHHHHHHhc------------------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 039873 442 VGVLSACGH------------------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK 503 (709)
Q Consensus 442 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 503 (709)
..+..++.. .|++++|...|+.+++.++-.+. .+.++..+ +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHHH----HHHHHHH---------
Confidence 333333332 45666777777666543222221 11111110 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc---hhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 504 WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV---GTYILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 504 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
......+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345567889999999999999999999875 5688999999999999999999999987654
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=1.6e-08 Score=89.85 Aligned_cols=136 Identities=8% Similarity=-0.080 Sum_probs=79.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
.|++++|++.+++... ..|+ ...+..+...|...|++++|.+.|+..++.. +-+...|..+..+|.+.|++++|.
T Consensus 10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHH
Confidence 3444444444444432 1222 1233344444555555555555555544321 112345555555555666666665
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 495 KFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRI-AEYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 495 ~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
..|++. .+.|+ ..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 555432 23444 77788888888888888766554 588999999999999888888888775
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=4.8e-08 Score=109.85 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=132.8
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039873 383 AKGGNIEAANKVFSDMR-----------YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGH 450 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~ 450 (709)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788899988888765 345667888888899999999999999998874 45 45677788888888
Q ss_pred cccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHH
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRR 527 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~ 527 (709)
.|++++|...|+++.+. .| +...+..+..+|.+.|++++ ++.|++. ...|+ ...|..+..++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988763 34 45678888888999999988 8877643 23454 7788888889999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 528 IAEYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
.++++++++|++...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999988889999999877665
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=6.8e-06 Score=88.10 Aligned_cols=201 Identities=7% Similarity=-0.055 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH-HHHhhc
Q 039873 320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN-KVFSDM 398 (709)
Q Consensus 320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~~ 398 (709)
.+..+|+++.... +.+...|...+.-+...|+.+.|+.+++.+++. +.+...+. .|+...+.++.. .+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 3556666666532 223344544555556667777777777777766 33333322 222211111110 111110
Q ss_pred C------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccccHHHHHHHHHHHH
Q 039873 399 R------------YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC-GHLGLVQEGFYYLNHLM 465 (709)
Q Consensus 399 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~ 465 (709)
. ......|...+..+.+.+..+.|..+|++. ... ..+...|......- ...++.+.|..+|+..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 011235666666666666777777777777 211 12233332211111 11225777777777776
Q ss_pred HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039873 466 KQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYIL 533 (709)
Q Consensus 466 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 533 (709)
+.++-. ...+...++...+.|+.+.|+.+|+... .....|...+.--..+|+.+.+..++++..
T Consensus 348 ~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 654322 3345556666677777777777777762 245666666665566666666666665554
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=2.4e-06 Score=83.94 Aligned_cols=78 Identities=9% Similarity=-0.074 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc----------CCCCchhHHHHHHHhhhcCCch
Q 039873 489 LLDEAEKFMRSTPVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHM----------DPNDVGTYILLSNMYAKEKRWD 557 (709)
Q Consensus 489 ~~~~A~~~~~~~~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~ 557 (709)
+.++|..+|+++.-+ |+..+-..++.++.+.|++++|+..++.+.+. +|+++.++..++..+...|+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 455555555443211 22222222333455555555555555555443 35555555555555555554
Q ss_pred hHHHHHHHHHh
Q 039873 558 GVSKIRKLMKV 568 (709)
Q Consensus 558 ~a~~~~~~m~~ 568 (709)
+|.++++++.+
T Consensus 271 ~a~~l~~qL~~ 281 (310)
T 3mv2_B 271 DTEDLTNQLVK 281 (310)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=1.5e-06 Score=85.40 Aligned_cols=238 Identities=9% Similarity=0.014 Sum_probs=156.0
Q ss_pred hcCChHHHHHHHHhccCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHH
Q 039873 283 KCGKFSNAKKVFEGLETRN-VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA 361 (709)
Q Consensus 283 ~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~ 361 (709)
-.|.+..++.-...+...+ ...---+.++|...|++... ..-.|....+. ++..+...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~-~la~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLD-LYVQFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHH-HHHHHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHH-HHHHHhccc----HHHHHH
Confidence 4566666666555543322 22222334667766666531 01122221222 222222222 455566
Q ss_pred HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873 362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP 436 (709)
Q Consensus 362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 436 (709)
..+..+ .++......+..+|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 555554 44555556888899999999999999998743 3556778888999999999999999999988 577
Q ss_pred -----CHHHHHHHHHHH--hccc--cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----
Q 039873 437 -----NHVTFVGVLSAC--GHLG--LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV----- 502 (709)
Q Consensus 437 -----d~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 502 (709)
+..+...+..++ ...| .+.+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+.-
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 356666666663 3334 899999999998543 45533334445589999999999999864311
Q ss_pred ------CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873 503 ------KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 503 ------~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 542 (709)
.| |+.+.-.+|......|+ .|.++++++.+..|+++..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 14 46666566666666776 8899999999999998643
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.69 E-value=3.5e-07 Score=90.99 Aligned_cols=174 Identities=9% Similarity=-0.109 Sum_probs=127.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873 389 EAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQ 467 (709)
Q Consensus 389 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 467 (709)
+.....+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 3344444444444555666777777888888888888888877 3554 45677777788888888888888877643
Q ss_pred hCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--chh
Q 039873 468 IGIVPGLEHYTCI-VGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND--VGT 542 (709)
Q Consensus 468 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 542 (709)
..|+....... .-.+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 34554333222 22355667777777776543 2345 47888999999999999999999999999999987 788
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 543 YILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 543 ~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.65 E-value=4.9e-07 Score=77.61 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873 305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384 (709)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 384 (709)
|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.+ +.+..++..+...|.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455555555555555555555554421 1122233333333334444444444444433332 2223333444444445
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 385 GGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.|++++|...|+++. ..+...|..+...|.+.|++++|.+.|+++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555554444433 12333444444555555555555555555443
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=1.7e-06 Score=81.59 Aligned_cols=172 Identities=8% Similarity=-0.104 Sum_probs=125.3
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHHH
Q 039873 391 ANKVFSDMR-YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG----LVQEGFYYLNHLM 465 (709)
Q Consensus 391 A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 465 (709)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 3456677777777777788888888888877755 44555566666666 5 7888888888875
Q ss_pred HhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHH
Q 039873 466 KQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTP-VKWD---VVAWHTLLNASRV----HQNYGFGRRIAEYIL 533 (709)
Q Consensus 466 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~pd---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 533 (709)
+. -+...+..|..+|.. .+++++|.+.|++.- ..|. +..+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 245567777777776 788888888887543 3332 6778888888877 788999999999998
Q ss_pred hcCCCCchhHHHHHHHhhhc-C-----CchhHHHHHHHHHhCCC
Q 039873 534 HMDPNDVGTYILLSNMYAKE-K-----RWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 534 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 571 (709)
+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 55667888999998764 3 89999999998887653
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=6.7e-07 Score=89.93 Aligned_cols=219 Identities=11% Similarity=0.010 Sum_probs=145.4
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHH
Q 039873 315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKV 394 (709)
Q Consensus 315 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 394 (709)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777777777665421 111 0 11135666666666554 3467777888888877
Q ss_pred HhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccccHHHHHHH
Q 039873 395 FSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAAE---ERPN--HVTFVGVLSACGHLGLVQEGFYY 460 (709)
Q Consensus 395 f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~~ 460 (709)
|.+... .+ ..+|+.+...|...|++++|++.|++..+.- -.|. ..++..+...+.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776542 11 3477888888999999999999998876521 1222 3467777788888 999999999
Q ss_pred HHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHH
Q 039873 461 LNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRI 528 (709)
Q Consensus 461 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~ 528 (709)
|+.......-..+ ..++..+...|.+.|++++|++.|++.- + .++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988663321111 3577888999999999999999877431 1 112 23556666677778999999999
Q ss_pred HHHHHhcCCCCchh-----HHHHHHHhhhcCCchhHHH
Q 039873 529 AEYILHMDPNDVGT-----YILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 529 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 561 (709)
+++.+ +.|....+ ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865432 33455555 5666655555
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.59 E-value=1.3e-06 Score=98.18 Aligned_cols=189 Identities=12% Similarity=-0.027 Sum_probs=146.2
Q ss_pred hccCChhHHHHHHHHHH--------HhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 039873 348 AGLSALRHGDLLHAHIE--------KSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHH 416 (709)
Q Consensus 348 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 416 (709)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788899998888887 322 55677888889999999999999999998773 4677999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873 417 GLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK 495 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (709)
|++++|++.|++..+ +.| +...+..+..++...|++++ .+.|+.+.+. .+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998 456 45678888889999999999 9999998763 12346788999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----chHHHHHHHHHHhcCCCCchh
Q 039873 496 FMRST-PVKWD-VVAWHTLLNASRVHQN-----YGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 496 ~~~~~-~~~pd-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 542 (709)
.+++. .+.|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99975 45676 6677777777655554 344444555555555544443
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=3.8e-05 Score=82.30 Aligned_cols=338 Identities=8% Similarity=0.016 Sum_probs=177.6
Q ss_pred CChHHHHHHHhcCCC--CCcchHHHHHHHHHhCCC-hhHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHhc----CCCchH
Q 039873 82 NQISIARQLFDNMRQ--RNVVSYSSLMTWYLHNGF-LLETLKLFKNMVSGDNLEP-NEYIFSIVLSSCSR----SGRGAE 153 (709)
Q Consensus 82 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~~~~~----~~~~~~ 153 (709)
|+++.++.+|++... |++..|...+.-..+.+. .+....+|+.....-|..| +...|...+..+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 567777777766553 666666666665555442 3445555655542223323 44455555544332 234566
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCChHHHHHHHhhCCC----CCcccHHHHHHHHHhCCC
Q 039873 154 GRQCHGYVFKSGLVFCKYVRNALVELYTK-------------CLDVEMAKRLLDLLPG----YDVFEYNSVLNGLIENEC 216 (709)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~ 216 (709)
++.+++.+++.....-..+|......-.. .+.+..|+.+++.+.. .+...|...+.--..++.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 67777777663221111122211111000 0112223333322211 133356555544322211
Q ss_pred -------ccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873 217 -------FRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN 289 (709)
Q Consensus 217 -------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 289 (709)
.+.+..+|++++... .-+...|...+.-+...|+++.|..+++..++. +.+...+.. |+...+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH
Confidence 234567888877643 234556666666777788899999999988888 444433332 333222121
Q ss_pred H-HHHHHhcc------------CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH--HHHHHhccCChh
Q 039873 290 A-KKVFEGLE------------TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV--MLNSAAGLSALR 354 (709)
Q Consensus 290 A-~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~--ll~~~~~~~~~~ 354 (709)
. ..+.+... ......|-..+.-..+.+..+.|..+|.+. +.. ..+...|.. .+.. ...++.+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~-~~~~d~~ 337 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY-YATGSRA 337 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH-HHHCCSH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH-HHCCChH
Confidence 1 11111110 011245666666666677788888888887 211 112122211 1111 1123678
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.|+.+++..++.. +.+...+...++...+.|+.+.|..+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888887753 3344455667777777888888888888874 3566677777666667777777777776653
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=4.4e-07 Score=100.01 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=123.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 039873 385 GGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYY 460 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 460 (709)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998764 35678999999999999999999999999984 554 66888889999999999999999
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhc
Q 039873 461 LNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH---QNYGFGRRIAEYILHM 535 (709)
Q Consensus 461 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 535 (709)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987642 334678999999999999999999998754 2334 478888999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 039873 536 DPNDVGTYILLS 547 (709)
Q Consensus 536 ~p~~~~~~~~l~ 547 (709)
+|++...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=1e-07 Score=84.54 Aligned_cols=121 Identities=13% Similarity=-0.012 Sum_probs=99.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 039873 445 LSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQN 521 (709)
Q Consensus 445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~ 521 (709)
...+...|++++|+..+.... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.|+ ..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 345567789999999988763 34444 335567899999999999999998854 34554 8899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH-HHHHh
Q 039873 522 YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR-KLMKV 568 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~-~~m~~ 568 (709)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+.+ ++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764 66654
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=4.5e-07 Score=82.73 Aligned_cols=157 Identities=6% Similarity=-0.103 Sum_probs=101.3
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL 451 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 451 (709)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+.. +..+...+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~- 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL- 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH-
Confidence 44556667777888888888877663 35567777777777777777777777776553 33322 2111110000
Q ss_pred ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 039873 452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIA 529 (709)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~ 529 (709)
...+...+|.+.+++. ...| +...|..+...+...|++++|+..+
T Consensus 85 ---------------------------------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 85 ---------------------------------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ---------------------------------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------------------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0000111122222211 1234 4777888888888899999999999
Q ss_pred HHHHhcCCCC--chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 530 EYILHMDPND--VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 530 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+++++.+|+. ...+..++.+|...|+.++|...+++...
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999988764 55888899999999999999888887653
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.54 E-value=9.1e-07 Score=97.51 Aligned_cols=146 Identities=10% Similarity=-0.068 Sum_probs=101.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 039873 350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLF 426 (709)
Q Consensus 350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (709)
.|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888887654 44577788888888889999999998887653 35678888888889999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 039873 427 QNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA---GLLDEAEKFMRST 500 (709)
Q Consensus 427 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 500 (709)
++..+. .| +...+..+..++...|++++|.+.++...+.. +.+...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 988874 45 45678888888888999999999988886642 23456778888888888 8899988887643
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=4e-07 Score=80.39 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=85.2
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHH
Q 039873 469 GIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYIL 545 (709)
Q Consensus 469 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 545 (709)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 33443 345667777888888888888887754 2345 48899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCchhHHHHHHHHHhC
Q 039873 546 LSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 546 l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998864
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=3.3e-06 Score=83.83 Aligned_cols=124 Identities=12% Similarity=0.043 Sum_probs=55.8
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRY--RDIITWNA-MICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA 447 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 447 (709)
...+..+...|.+.|++++|...|+++.. |+...+.. ....+.+.++.++|++.|++.... .| +...+..+..+
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~ 228 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 34444455555555555555555555542 22221111 112234444455555555555542 23 23344445555
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFM 497 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (709)
+...|++++|...+..+.+...-..+...+..|+.+|...|+.++|...+
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 55555555555555555443211112334444444444444444444443
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.48 E-value=2.1e-06 Score=80.66 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=105.6
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhhHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 039873 381 MYAKGGNIEAANKVFSDMRY--R-DIITWNA----------------MICGYSHHGLGREALTLFQNMLAAEERP-NHVT 440 (709)
Q Consensus 381 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t 440 (709)
.+.+.|++++|...|++... | +...|.. +...|.+.|++++|+..|++..+ +.| +...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 34455566666666555442 1 2233444 88888899999999999999888 456 4567
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGL--LDEAEKFMRSTPVKWDVV--AWHTLLNA 515 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~pd~~--~~~~ll~~ 515 (709)
+..+...+...|++++|...|+.+++. .| +...+..+...|...|. .+++...++... .|+.. .|..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 888888889999999999999988763 34 46678888888766654 344555566553 45533 34445556
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCC
Q 039873 516 SRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 516 ~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
+...|++++|+..+++++++.|+.
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCH
Confidence 667889999999999999999863
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=4.9e-07 Score=90.93 Aligned_cols=196 Identities=9% Similarity=-0.070 Sum_probs=147.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039873 350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNM 429 (709)
Q Consensus 350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (709)
.|++++|.+++....+..- .. .+...|++++|...|.+. ...|...|++++|++.|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 4677888888888776421 11 111158899999887764 56788999999999999988
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873 430 LAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRST 500 (709)
Q Consensus 430 ~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 500 (709)
.+. |-.+. ..+|..+...+...|++++|...|+...+.+.-..+ ..++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 347888888999999999999999988664321111 3577888899988 9999999987643
Q ss_pred -CCC---CC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc------hhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873 501 -PVK---WD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV------GTYILLSNMYAKEKRWDGVSKIRKLM 566 (709)
Q Consensus 501 -~~~---pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 566 (709)
.+. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 11 46778888899999999999999999998765432 36677788888999999999999988
Q ss_pred H
Q 039873 567 K 567 (709)
Q Consensus 567 ~ 567 (709)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.46 E-value=2.7e-06 Score=77.54 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=103.0
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHH-HHH
Q 039873 339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDIITWNAMICG-YSH 415 (709)
Q Consensus 339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~ 415 (709)
.+......+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45556677889999999999999888764 55678889999999999999999999999874 333333222111 122
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (709)
.+...+|++.|++..+ ..|+ ...+..+..++...|++++|...|+.+.+...-..+...+..+..+|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233346777777766 3453 456666666777777777777777766442111112345566666666666666666
Q ss_pred HHHH
Q 039873 495 KFMR 498 (709)
Q Consensus 495 ~~~~ 498 (709)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=1.4e-06 Score=74.38 Aligned_cols=108 Identities=12% Similarity=-0.012 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASR 517 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~ 517 (709)
.+......+.+.|++++|.+.|+..++. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444445555555555555555555432 1223445555555555555555555555432 2233 3666777777777
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
..|++++|++.++++++++|++...+..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666655543
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.46 E-value=3.8e-06 Score=80.00 Aligned_cols=182 Identities=14% Similarity=0.024 Sum_probs=127.6
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHhCCCC--ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CCh----hhHHHHH
Q 039873 339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE--HLIVGNALINMYAKGGNIEAANKVFSDMRY--RDI----ITWNAMI 410 (709)
Q Consensus 339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 410 (709)
.+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+. ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455667888999999999999999864221 135677889999999999999999999763 332 1455555
Q ss_pred HHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCC
Q 039873 411 CGYSH------------------HGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIV 471 (709)
Q Consensus 411 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 471 (709)
.++.. .|+.++|+..|+++.+ ..|+.. ..... ...+.. .....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~----~~l~~~------~~~~~------ 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT----KRLVFL------KDRLA------ 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH----HHHHHH------HHHHH------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH----HHHHHH------HHHHH------
Confidence 55554 5789999999999998 456543 22111 111111 11110
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 472 PGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 472 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
...-.+...|.+.|++++|...|++. ...|+ ...+..+..++.+.|+.++|++.++.+....|++..
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235677889999999999988754 22344 256788888999999999999999999988887643
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=1.7e-05 Score=78.93 Aligned_cols=161 Identities=12% Similarity=-0.044 Sum_probs=116.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHH
Q 039873 408 AMICGYSHHGLGREALTLFQNMLAAE-ERPNHV----TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYT 478 (709)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 478 (709)
..+..+...|++++|.+++++..... ..|+.. .+..+...+...|++++|...++.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788888888888888887632 122221 2234555667777889999888888763222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------chhH
Q 039873 479 CIVGLLSKAGLLDEAEKFMRST--------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND------VGTY 543 (709)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 543 (709)
.+...|...|++++|.+.+++. ...+. ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999888886643 11122 3477888889999999999999999998864322 5688
Q ss_pred HHHHHHhhhcCC-chhHHHHHHHHHh
Q 039873 544 ILLSNMYAKEKR-WDGVSKIRKLMKV 568 (709)
Q Consensus 544 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 568 (709)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=5.6e-06 Score=82.48 Aligned_cols=165 Identities=12% Similarity=-0.033 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----h
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-H----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----L 474 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 474 (709)
..+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+....+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999999888877432211 1 12333445567788999999998887642211111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC------C
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRSTP----VKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN------D 539 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 539 (709)
..++.+...|...|++++|.+.+++.- ..|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478888999999999999998876431 1122 257888888999999999999999999876422 1
Q ss_pred chhHHHHHHHhhhcCCchhH-HHHHHHHHh
Q 039873 540 VGTYILLSNMYAKEKRWDGV-SKIRKLMKV 568 (709)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 568 (709)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777777653
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.43 E-value=5.2e-06 Score=77.96 Aligned_cols=134 Identities=11% Similarity=-0.063 Sum_probs=85.7
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 039873 376 NALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHL 451 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~ 451 (709)
+.+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ +.|+ ..++..+...+...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 446777888888888888887765 23567788888888888888888888888887 4554 45666666666555
Q ss_pred cc--HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 039873 452 GL--VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWDVVAWHTLLN 514 (709)
Q Consensus 452 g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd~~~~~~ll~ 514 (709)
|. .+.+...+.... ...|....+..+...+...|++++|...|++ +.+.|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 43 333444444431 2222222333445566677888888888874 456677665555444
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=5.2e-06 Score=78.06 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc----------
Q 039873 473 GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV---------- 540 (709)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---------- 540 (709)
+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++..|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 3344444444444444444444444321 1122 356677777777778888888888888888777665
Q ss_pred ------hhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 541 ------GTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 541 ------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
..+..++.+|...|++++|.+.++...+.
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88999999999999999999999998764
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.41 E-value=3e-05 Score=76.84 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhcC---CCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 505 DVVAWHTLLNASRVHQNY-GFGRRIAEYILHMD---PNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
|...|+-+-..+.+.|+. +.....++++.+++ |.++..+..++++|.+.|+.++|.++++.+.
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 355555555444444442 22333444444433 4444555555555555555555555555554
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=9.9e-07 Score=87.36 Aligned_cols=192 Identities=7% Similarity=-0.098 Sum_probs=126.4
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMR--Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLS 446 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~ 446 (709)
+...+..+...|.+.|++++|...|++.. . .+...|..+...|.+.|++++|++.+++..+ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34456667777888888888888888765 2 3667788888888888888888888888877 3454 557777778
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGR 526 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~ 526 (709)
++...|++++|...|....+...-.+. .+...+....+......... .......++......+ ..+. .|+.+.|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 888888888888888877653221111 11111211111111111111 2222233344443333 3332 68889999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHhhhc-CCchhHHHHHHHHHhC
Q 039873 527 RIAEYILHMDPNDVGTYILLSNMYAKE-KRWDGVSKIRKLMKVR 569 (709)
Q Consensus 527 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 569 (709)
+.++++++.+|++......+...+.+. +++++|.++|..+.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7899999999988753
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.40 E-value=9.2e-05 Score=73.33 Aligned_cols=160 Identities=10% Similarity=0.100 Sum_probs=121.7
Q ss_pred CCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc------H
Q 039873 386 GNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGR--EALTLFQNMLAAEERPNHVTFVGVLSACGHLGL------V 454 (709)
Q Consensus 386 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~ 454 (709)
+++++++.+++++. .+|..+|+--...+.+.|.++ ++++.++++.+.. .-|...|..-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 67788888888776 357778888888888888888 9999999999854 3355566665555666665 8
Q ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCchHHHHH
Q 039873 455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE-AEKFMRSTP-V----KWDVVAWHTLLNASRVHQNYGFGRRI 528 (709)
Q Consensus 455 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~pd~~~~~~ll~~~~~~g~~~~a~~~ 528 (709)
+++++++..++.. .+-|...|+-+-.++.+.|+..+ +.++..+.- . ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999988763 34567788888889999998555 445655431 1 23688899999999999999999999
Q ss_pred HHHHHh-cCCCCchhHHHHHH
Q 039873 529 AEYILH-MDPNDVGTYILLSN 548 (709)
Q Consensus 529 ~~~~~~-~~p~~~~~~~~l~~ 548 (709)
++.+.+ .+|-....+.-.++
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999996 79987666655443
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=2e-06 Score=75.83 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445666777888888888888887753 2234 58888889999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 039873 552 KEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 552 ~~g~~~~a~~~~~~m~~~ 569 (709)
..|++++|.+.++...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988763
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=1.7e-06 Score=73.85 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=87.8
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 470 IVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 470 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 356777889999999999999998753 3345 488999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCchhHHHHHHHHHh
Q 039873 547 SNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 547 ~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=1.3e-05 Score=75.36 Aligned_cols=144 Identities=10% Similarity=-0.045 Sum_probs=96.6
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 039873 376 NALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 455 (709)
..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455667777888888888887777777777777777788888888888887777642 224456666667777777777
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873 456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
+|...|+...+...-.+... +... .....|+ ...|..+...+...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKIL-----------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGG-----------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHh-----------ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777655321111100 0000 0012233 46777888888899999999999999999
Q ss_pred cCCCC
Q 039873 535 MDPND 539 (709)
Q Consensus 535 ~~p~~ 539 (709)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98865
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=3.5e-06 Score=73.59 Aligned_cols=95 Identities=16% Similarity=0.035 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
..+..+...+.+.|++++|.+.|+.. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34556667778888888888887743 2234 588888888999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 039873 553 EKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~~ 569 (709)
.|++++|.+.++...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988763
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.35 E-value=2.3e-05 Score=73.69 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHH----cCC
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMRYRD-----IITWNAMICGYSH----HGL 418 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~----~g~ 418 (709)
+.++|...+....+.| +...+..|..+|.. .+++++|...|++..+.+ ..++..|...|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 4444555554444433 34444555555555 667777777777766432 4677777777777 667
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-c-----cHHHHHHHHHHHHH
Q 039873 419 GREALTLFQNMLAAEERPNHVTFVGVLSACGHL-G-----LVQEGFYYLNHLMK 466 (709)
Q Consensus 419 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~ 466 (709)
+++|++.|++..+. .++...+..+...+... | ++++|..+|+...+
T Consensus 145 ~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 145 DVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 77888888777764 22333455555555432 2 67777777777655
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=5.6e-05 Score=75.11 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=57.0
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhhcCC------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-H
Q 039873 374 VGNALINMYAKGGNIEAANKVFSDMRY------R----DIITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN-H 438 (709)
Q Consensus 374 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~ 438 (709)
+++.+...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|++.+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 355555666666666666666555441 1 1236666777777777777777777766542 22222 4
Q ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHHHH
Q 039873 439 VTFVGVLSACGHLG-LVQEGFYYLNHLMK 466 (709)
Q Consensus 439 ~t~~~ll~a~~~~g-~~~~a~~~~~~~~~ 466 (709)
.++..+..++...| .+++|.+.++.+..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 56677777777777 45777777777654
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=8.3e-06 Score=68.64 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=70.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNASR 517 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~~ 517 (709)
++..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...+++. .. ..+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34444444445555555555555544321 123344555555566666666666655432 11 234667778888888
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 554 (709)
..|+++.|...++++++..|+++..+..+..++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888999999999998888888888888877776544
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=4.1e-06 Score=85.22 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=110.8
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 039873 387 NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH 463 (709)
Q Consensus 387 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 463 (709)
++++|...|+.... .+...|..+...|.+.|++++|+..|++.... .|+...+ ..+++.+.-..
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~~~ 194 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQAL 194 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHHHH
Confidence 34444444444331 24456777777777888888888888777763 3332100 00111111000
Q ss_pred HHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 464 LMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 464 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++..
T Consensus 195 ---------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 195 ---------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 1346777888888888888888887643 2334 4888899999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCchhH-HHHHHHHH
Q 039873 542 TYILLSNMYAKEKRWDGV-SKIRKLMK 567 (709)
Q Consensus 542 ~~~~l~~~~~~~g~~~~a-~~~~~~m~ 567 (709)
.+..+..+|...|++++| ...++.|.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 55666664
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.30 E-value=1e-05 Score=72.33 Aligned_cols=125 Identities=7% Similarity=-0.035 Sum_probs=81.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 039873 442 VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH 519 (709)
Q Consensus 442 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~ 519 (709)
..+...+...|++++|...|....+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 33344444555555555555554432 1123445555566666666666666665432 1123 467788888888899
Q ss_pred CCchHHHHHHHHHHhcCCCCchhHHH--HHHHhhhcCCchhHHHHHHHHHh
Q 039873 520 QNYGFGRRIAEYILHMDPNDVGTYIL--LSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
|++++|...++++++..|.+...+.. ++..+...|++++|.+.+....+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999988777744 44447888999999999887653
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=1.2e-05 Score=68.25 Aligned_cols=116 Identities=9% Similarity=-0.086 Sum_probs=75.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASR 517 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~ 517 (709)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444455555555555555554432 1123445555556666666666666655432 1123 3667777888888
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCch
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWD 557 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 557 (709)
..|+++.|...++++++..|++...+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999988888888888888888753
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=1.2e-05 Score=68.74 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI 480 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 480 (709)
+...|..+...+.+.|++++|++.|++.... .| +...+..+...+...|++++|...++.+.+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~--------- 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---E--------- 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---C---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---C---------
Confidence 3445555566666666666666666665552 23 3334444444455555555555555444331 1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873 481 VGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR 555 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 555 (709)
..+...|..+...+...|++++|...++++++.+|.+...+..+..+|...|+
T Consensus 81 ----------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ----------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ----------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 12456677777778888888888888888888888888888888888776653
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=3.6e-06 Score=81.52 Aligned_cols=133 Identities=14% Similarity=0.014 Sum_probs=83.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHH
Q 039873 407 NAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVG 482 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 482 (709)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .|+ ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHH
Confidence 34455566667777777777666553 35444444444456667777777777764321 121 224556667
Q ss_pred HHHhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 483 LLSKAGLLDEAEKFMRSTP---VKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~---~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
++.+.|++++|++.|++.. ..|. ...+..+..+++..|+.++|...++++...+|+ ......|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7777777777777776541 1133 335666677788888888888888888888887 5555444
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=4.2e-06 Score=81.08 Aligned_cols=181 Identities=7% Similarity=-0.088 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 039873 384 KGGNIEAANKVFSDMRY--R-DIITWNAM-------ICGYSHHGLGREALTLFQNMLAAEERPNHV-------------- 439 (709)
Q Consensus 384 ~~g~~~~A~~~f~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------------- 439 (709)
..++.+.|.+.|.++.. | ....|+.+ ...+...++..+++..+++-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888763 3 44678877 4555555556666665555444 333321
Q ss_pred --------HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 039873 440 --------TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDV----V 507 (709)
Q Consensus 440 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~----~ 507 (709)
....+...+...|++++|.+.|..+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223345667889999999999987643 3455446666777899999999999999866444443 3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcC--CC-CchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHMD--PN-DVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+|+++.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778889999999999999999998643 54 4457789999999999999999999999874
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=4.5e-05 Score=75.79 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHH
Q 039873 304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYA 383 (709)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 383 (709)
.+...+..+...|++++|++.+.+..+.... +.... .. ...+..+...|.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~~----------------------------~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-QF----------------------------LQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-HH----------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-HH----------------------------HHHHHHHHHHHh
Confidence 4445566677777888887777766653211 10000 00 001112333444
Q ss_pred hcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHH
Q 039873 384 KGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAA-EERPN-----HVTFVGVLSAC 448 (709)
Q Consensus 384 ~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd-----~~t~~~ll~a~ 448 (709)
..|++++|...|++... .+ ..+|+.+...|...|++++|++.|++.... ...|+ ..++..+...+
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 55555555555544321 11 225555666666666666666666665421 01111 13555566666
Q ss_pred hccccHHHHHHHHHHHHHhh---CCCCC-hHHHHHHHHHHHhcCCHHHH-HHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQI---GIVPG-LEHYTCIVGLLSKAGLLDEA-EKF 496 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A-~~~ 496 (709)
...|++++|..+++...+.. +.... ...|..+...|.+.|++++| ...
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 66666666666666654321 11111 34566666666666666666 443
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.20 E-value=4.1e-06 Score=76.25 Aligned_cols=118 Identities=8% Similarity=0.047 Sum_probs=81.5
Q ss_pred ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCc--hH
Q 039873 450 HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNA-SRVHQNY--GF 524 (709)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~-~~~~g~~--~~ 524 (709)
..|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4556666666666655431 223456666677777777777777766543 1123 46667777777 6678887 88
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|+..++++++.+|+++..+..++.+|...|++++|...++...+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888888888888888888888889999998888888764
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=7.4e-06 Score=69.68 Aligned_cols=95 Identities=13% Similarity=-0.013 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35666677788888888888887643 2234 478888888899999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 039873 553 EKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~~ 569 (709)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999988763
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.19 E-value=2.2e-05 Score=72.87 Aligned_cols=156 Identities=12% Similarity=-0.022 Sum_probs=80.2
Q ss_pred hcCCHHHHHH---HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHH
Q 039873 384 KGGNIEAANK---VFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQ 455 (709)
Q Consensus 384 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~ 455 (709)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++.... |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443322234455666666666666666666666665441 11111 223444444455555555
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039873 456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW--DVVAWHTLLNASRVHQNYGFGRRIAEYIL 533 (709)
Q Consensus 456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 533 (709)
+|...++....... ..+..| ...++..+...+...|++++|...+++.+
T Consensus 84 ~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLA-----------------------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHH-----------------------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555544433211 111011 12334455555666666666666666665
Q ss_pred hcC--CCC----chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 534 HMD--PND----VGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 534 ~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++. ..+ ...+..++.+|...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 432 111 22356777788888888888888777654
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=5.4e-06 Score=77.12 Aligned_cols=171 Identities=9% Similarity=-0.073 Sum_probs=104.6
Q ss_pred HHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccH
Q 039873 378 LINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLV 454 (709)
Q Consensus 378 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 454 (709)
.+......|++++|.+.|+.-.. .....|..+...+...|++++|++.|++.... .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 33444556777777777764432 23456777888888899999999999988873 3321111000 00
Q ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873 455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYI 532 (709)
Q Consensus 455 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~ 532 (709)
..-. ..+ ....+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..++++
T Consensus 80 ~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 000 1245667777888888888888877643 2234 4778888889999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHhhhcCCchhHH-HHHHHHHhC
Q 039873 533 LHMDPNDVGTYILLSNMYAKEKRWDGVS-KIRKLMKVR 569 (709)
Q Consensus 533 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 569 (709)
++++|++...+..+..++...|+.+++. ..++.|..+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888877 555555443
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=4.8e-05 Score=70.54 Aligned_cols=128 Identities=13% Similarity=0.002 Sum_probs=78.4
Q ss_pred ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 039873 371 HLIVGNALINMYAKGGNIEAANKVFSDMRY---------RDIITWNAMICGYSHHGLGREALTLFQNMLAA----EERP- 436 (709)
Q Consensus 371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 436 (709)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|++.|++.... |-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344555666667777777777766665542 12346777788888888888888888876652 1112
Q ss_pred -CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873 437 -NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 437 -d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 498 (709)
....+..+...+...|++++|...++.......-..+ ...+..+...+.+.|++++|.+.++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1234666667777788888888888776542111111 1234555566666666666665554
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=5.9e-06 Score=69.85 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE 553 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 553 (709)
.+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788889999999888754 2345 5888888889999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 039873 554 KRWDGVSKIRKLMKVR 569 (709)
Q Consensus 554 g~~~~a~~~~~~m~~~ 569 (709)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=3.3e-05 Score=68.95 Aligned_cols=127 Identities=10% Similarity=-0.069 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
.|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...+....+. .+.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34444455555555555555555554421 123344445555555555555555555555442 122344455555555
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCchHHHHHHHHHHh
Q 039873 485 SKAGLLDEAEKFMRST-PVKW-DVVAWHT--LLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 485 ~~~g~~~~A~~~~~~~-~~~p-d~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
.+.|++++|.+.+++. ...| +...|.. +...+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 5555555555555432 1122 2333322 22224455666666666665543
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=1.4e-05 Score=65.73 Aligned_cols=97 Identities=11% Similarity=0.049 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN--DVGTYILLSNM 549 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 549 (709)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345566777777888888888777643 1223 4778888888889999999999999999999998 88899999999
Q ss_pred hhhc-CCchhHHHHHHHHHhCC
Q 039873 550 YAKE-KRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 550 ~~~~-g~~~~a~~~~~~m~~~~ 570 (709)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999999887654
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=1.7e-05 Score=68.40 Aligned_cols=98 Identities=11% Similarity=-0.056 Sum_probs=80.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 472 PGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 472 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
.+...+..+...+.+.|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34566777777788888888888877643 2234 477888888889999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHhC
Q 039873 550 YAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 550 ~~~~g~~~~a~~~~~~m~~~ 569 (709)
|...|++++|...++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=1.2e-05 Score=72.14 Aligned_cols=94 Identities=9% Similarity=-0.042 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK 552 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 552 (709)
..+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555556666666666666665532 2223 466666666677777777777777777777777777777777777777
Q ss_pred cCCchhHHHHHHHHHh
Q 039873 553 EKRWDGVSKIRKLMKV 568 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~ 568 (709)
.|++++|.+.+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 7777777777776665
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.07 E-value=2.6e-05 Score=66.52 Aligned_cols=97 Identities=8% Similarity=-0.032 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873 473 GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY 550 (709)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 550 (709)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|++...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3567778888899999999999988753 3344 5788888999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHhC
Q 039873 551 AKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 551 ~~~g~~~~a~~~~~~m~~~ 569 (709)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.07 E-value=2.2e-05 Score=71.29 Aligned_cols=127 Identities=9% Similarity=0.101 Sum_probs=89.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH-HHhcCCH--
Q 039873 414 SHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL-LSKAGLL-- 490 (709)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 490 (709)
...|++++|++.|++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777777777776642 2345677777777788888888888888776542 2245567777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhH
Q 039873 491 DEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTY 543 (709)
Q Consensus 491 ~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 543 (709)
++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888887643 2234 477888888899999999999999999999999875433
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.06 E-value=3.1e-05 Score=64.96 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 457788899999999999999998754 1223 57889999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 039873 552 KEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 552 ~~g~~~~a~~~~~~m~~~ 569 (709)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 149
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.06 E-value=1.5e-05 Score=70.18 Aligned_cols=100 Identities=8% Similarity=-0.039 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV 481 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 481 (709)
...|..+...+.+.|++++|+..|++... +.| +...|..+..++...|++++|...|+.+.+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-------------- 99 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-------------- 99 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------------
Confidence 34555555555555666666666655555 233 2334445555555555555555555554432
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873 482 GLLSKAGLLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND 539 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 539 (709)
.|+ +..|..+..++...|++++|+..+++++++.|++
T Consensus 100 ---------------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 100 ---------------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp ---------------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ---------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 232 4555666666666666666666666666666643
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=1.3e-05 Score=68.40 Aligned_cols=93 Identities=5% Similarity=-0.047 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc-------hhHHHH
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV-------GTYILL 546 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l 546 (709)
.+..+...+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|++.++++++++|++. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566777888888888888887643 33454 78888999999999999999999999999887654 367788
Q ss_pred HHHhhhcCCchhHHHHHHHHHh
Q 039873 547 SNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 547 ~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999998765
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.03 E-value=3.7e-05 Score=63.75 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE 553 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 553 (709)
.+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4445555555666666666655432 1122 3555666666666666666666666666666666666666666666666
Q ss_pred CCchhHHHHHHHHHh
Q 039873 554 KRWDGVSKIRKLMKV 568 (709)
Q Consensus 554 g~~~~a~~~~~~m~~ 568 (709)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666666666654
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=5e-05 Score=66.16 Aligned_cols=94 Identities=16% Similarity=-0.005 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 34444555555555555555555432 23344 34555555555566666666666666666666665566666666
Q ss_pred hhhcCCchhHHHHHHHHHh
Q 039873 550 YAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 550 ~~~~g~~~~a~~~~~~m~~ 568 (709)
|...|++++|.+.+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.99 E-value=3.7e-05 Score=67.50 Aligned_cols=94 Identities=14% Similarity=-0.069 Sum_probs=56.9
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA 447 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 447 (709)
...+..+...|.+.|++++|...|++.. ..+...|..+..+|...|++++|++.|++.... .| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHH
Confidence 3344455556666666666666666543 235556666666666666666666666666653 33 34455556666
Q ss_pred HhccccHHHHHHHHHHHHHh
Q 039873 448 CGHLGLVQEGFYYLNHLMKQ 467 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~ 467 (709)
+...|++++|...|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.99 E-value=3.8e-05 Score=75.78 Aligned_cols=47 Identities=2% Similarity=-0.129 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKA-GLLDEAEKFMRST 500 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~~ 500 (709)
.|+.++|.+.++... ...|+. .....+...+.+. +.+++|.++|++.
T Consensus 148 ~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666665555542 233432 2223333344444 5567777777655
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=0.0001 Score=60.95 Aligned_cols=104 Identities=15% Similarity=0.012 Sum_probs=57.5
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 039873 444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQN 521 (709)
Q Consensus 444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~ 521 (709)
+...+...|++++|...++..... .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 333344444444444444444332 1112334444455555555555555554422 1123 36667777777777888
Q ss_pred chHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 522 YGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
+++|...++++++.+|+++..+..+..+
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 8888888888888888776666655544
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00011 Score=63.98 Aligned_cols=116 Identities=13% Similarity=-0.065 Sum_probs=69.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV 481 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 481 (709)
+...|..+...+...|++++|++.|++..+ ..|+... ....+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 445555666666666666666666666655 3344200 023344444
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 482 GLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
..|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|++...+..+..+..
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 4555555555555554421 1123 46667777778888888888888888888888887766666655543
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.5e-05 Score=63.66 Aligned_cols=105 Identities=11% Similarity=-0.080 Sum_probs=57.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQ 520 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g 520 (709)
.....+...|++++|...|...++. .+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3333444444444444444444332 1112344555555555555555555554422 1223 3666777777777788
Q ss_pred CchHHHHHHHHHHhcC------CCCchhHHHHHHH
Q 039873 521 NYGFGRRIAEYILHMD------PNDVGTYILLSNM 549 (709)
Q Consensus 521 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 549 (709)
++++|+..++++++++ |.+......+..+
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 87 EYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888777 6665555554443
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=3.3e-05 Score=67.49 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-------CCCCchhH----HHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHM-------DPNDVGTY----ILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...|..+..++...|++++|+..+++++++ +|++...| ...+.+|...|++++|...|++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 348888888888899999999999998888 99998899 9999999999999999999999875
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=6.5e-05 Score=79.90 Aligned_cols=161 Identities=11% Similarity=0.025 Sum_probs=108.5
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873 386 GNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN 462 (709)
Q Consensus 386 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 462 (709)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++..+. .|+...+ . -++..+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH
Confidence 344445544443332 23457777888888888888888888888762 3322100 0 011110 00
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
.. ....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++.
T Consensus 314 ~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 SF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 10 1346778888888999999998887743 2334 488889999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCchhHHH-HHHHHHh
Q 039873 541 GTYILLSNMYAKEKRWDGVSK-IRKLMKV 568 (709)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 568 (709)
..+..+..++.+.|+++++.+ .++.|..
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998864 5565654
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=7.7e-05 Score=66.69 Aligned_cols=106 Identities=11% Similarity=-0.046 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASR 517 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~ 517 (709)
.+..+...+...|++++|...|+..++.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444455555555555555555554421 123455666666666666666666665532 2234 4778888888999
Q ss_pred hcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 518 VHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
..|++++|+..++++++++|++...+....
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999887554443
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=8e-05 Score=79.56 Aligned_cols=120 Identities=13% Similarity=-0.008 Sum_probs=79.5
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGH 450 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~ 450 (709)
+..+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+. .| +..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444556777888888888888765 235677888888888888888888888888774 45 35577777777888
Q ss_pred cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 039873 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL--LSKAGLLDEAEKFMR 498 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 498 (709)
.|++++|.+.|+++.+...-.+ ..+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888887766432222 234444443 667777777777766
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.92 E-value=0.00065 Score=68.02 Aligned_cols=178 Identities=10% Similarity=0.053 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH-------
Q 039873 388 IEAANKVFSDMRY---RDIITWNAMICGYSHH-G-LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ------- 455 (709)
Q Consensus 388 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~------- 455 (709)
++++++.++.+.. ++..+|+--...+.+. + ++++++++++++.+.. +-|...|..-.....+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhH
Confidence 5555555554432 2334454444444443 4 5555555555555421 113334443333333333333
Q ss_pred -HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc---
Q 039873 456 -EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL-------LDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNY--- 522 (709)
Q Consensus 456 -~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~--- 522 (709)
+++++++.+++. ..-|...|+....++.+.++ ++++++.+++. ...| |...|+-+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 555666655542 12344455555555555554 45565554422 2223 466666655555555443
Q ss_pred -----------------hHHHHHHHHHHhcC------CCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 523 -----------------GFGRRIAEYILHMD------PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 523 -----------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.........+.... +..+.....|+++|...|+.++|.++++.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11122222222211 45566777899999999999999999999864
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.92 E-value=7e-05 Score=63.36 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778889999999999999998754 2234 58888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 039873 552 KEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 552 ~~g~~~~a~~~~~~m~~~ 569 (709)
..|++++|.+.+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=6.6e-05 Score=66.96 Aligned_cols=63 Identities=6% Similarity=0.000 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
...|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 567788888889999999999999999999999999999999999999999999999988875
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.91 E-value=4.6e-05 Score=66.35 Aligned_cols=103 Identities=6% Similarity=-0.147 Sum_probs=61.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 039873 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRV 518 (709)
Q Consensus 441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~ 518 (709)
+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 333444455555555555555555432 1123445555555666666666666655532 1223 35666777777888
Q ss_pred cCCchHHHHHHHHHHhcCCCCchhHHH
Q 039873 519 HQNYGFGRRIAEYILHMDPNDVGTYIL 545 (709)
Q Consensus 519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~ 545 (709)
.|++++|+..+++++++.|+++.....
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 888888888888888888877655443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00021 Score=75.35 Aligned_cols=164 Identities=5% Similarity=-0.148 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccccHHHHHHHHHHHHHhh---CCCCC-hH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAA-EERPNHV----TFVGVLSACGHLGLVQEGFYYLNHLMKQI---GIVPG-LE 475 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 475 (709)
++..+...|...|++++|.+++.++... +-.++.. ..+.+-..+...|..+++..++....... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567788888888998888888887652 1112221 22223334456688888888887765422 22222 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC---CCC----c
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMD---PND----V 540 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 540 (709)
.+..|...|...|++++|.+++++. .-+|. ..++..++..|...|++++|..++++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999887643 11222 5577788889999999999999999987653 222 2
Q ss_pred hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 541 GTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566778888999999999988877754
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.88 E-value=0.002 Score=64.18 Aligned_cols=192 Identities=8% Similarity=-0.022 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC--CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC-hHHHHHHH
Q 039873 353 LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG--NIEAANKVFSDMR---YRDIITWNAMICGYSHHGL-GREALTLF 426 (709)
Q Consensus 353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 426 (709)
++.+..++..++... +-+..+++.-.-.+.+.| .+++++.+++++. .+|..+|+--...+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 344555555555555555 3677777777766 3566677776666677776 47888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc-----
Q 039873 427 QNMLAAEERPNHVTFVGVLSACGHL--------------GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA----- 487 (709)
Q Consensus 427 ~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 487 (709)
+++.+.. +-|...|+.......+. +.++++++++...+.. .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 8887743 22444555444433333 4567777777776643 233455565555555544
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873 488 ------GLLDEAEKFMRST-PVKWDVVAWHTLLNA-----SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM 549 (709)
Q Consensus 488 ------g~~~~A~~~~~~~-~~~pd~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 549 (709)
+.++++++.++++ ...||. .|..+..+ ....|..++....+.++.+++|...+-|.-+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3466666665543 234553 34322221 1134566677777777778887766666555443
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.88 E-value=0.0037 Score=62.59 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=133.3
Q ss_pred CCHhHHHHHHHHHHhCCCCCCccc-hHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc-C-CHHHH
Q 039873 316 EYFEEALNLFCGMEYEAIRPNEFT-FAVMLNSAAGLS-ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG-G-NIEAA 391 (709)
Q Consensus 316 g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A 391 (709)
+..++|++++.+++.. .|+..| |+.--..+...+ .++++..+.+.+++.. +-+..+++.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3334455555555442 233222 222222223333 3555555555555443 33444454444444444 5 67788
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-------
Q 039873 392 NKVFSDMRY---RDIITWNAMICGYSHHGLGR--------EALTLFQNMLAAEERPNHVTFVGVLSACGHLGL------- 453 (709)
Q Consensus 392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~------- 453 (709)
+++++++.+ +|..+|+--...+.+.|..+ ++++.++++.+.. .-|...|+.-.....+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 888888774 45567766555555555555 8999999998853 3356677776666666664
Q ss_pred HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCC--------CCC
Q 039873 454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL--------------------DEAEKFMRSTPV--------KWD 505 (709)
Q Consensus 454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~--------~pd 505 (709)
++++++++..++.. .+-|...|+-+-..+.+.|+. .+..++...+.. .+.
T Consensus 224 ~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 224 LQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 78888888887653 234566777777777777764 333444333311 256
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHH-hcCCCCchhH
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYIL-HMDPNDVGTY 543 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~ 543 (709)
...+.-|+..|...|+.++|.++++.+. +.+|-....+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 8888899999999999999999999986 6777654433
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.86 E-value=9e-05 Score=75.21 Aligned_cols=137 Identities=8% Similarity=-0.051 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCC----------------hhhHHHHHHH
Q 039873 351 SALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRD----------------IITWNAMICG 412 (709)
Q Consensus 351 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~----------------~~~~~~li~~ 412 (709)
++++.|...+....+.. +.+...+..+...|.+.|++++|...|++.. .|+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333221 2346678889999999999999999999876 233 3677777788
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLL 490 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 490 (709)
|.+.|++++|++.|++..+. .| +...+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.|+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHH
Confidence 88888888888888887773 34 4556667777777777777777777776542 22 234455555555555555
Q ss_pred HHH
Q 039873 491 DEA 493 (709)
Q Consensus 491 ~~A 493 (709)
++|
T Consensus 281 ~~a 283 (336)
T 1p5q_A 281 LAR 283 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.84 E-value=1.3e-05 Score=67.10 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873 487 AGLLDEAEKFMRST-PV---KWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 487 ~g~~~~A~~~~~~~-~~---~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
.|++++|++.|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666665533 22 133 55666777777777888888888888888888777778888888888888888888
Q ss_pred HHHHHHh
Q 039873 562 IRKLMKV 568 (709)
Q Consensus 562 ~~~~m~~ 568 (709)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.82 E-value=4.1e-05 Score=81.80 Aligned_cols=114 Identities=7% Similarity=-0.017 Sum_probs=67.0
Q ss_pred hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHH
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGR 526 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~ 526 (709)
...|++++|.+.++++.+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555555432 1112445555556666666666666655432 2233 3666777777777777777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHH--hhhcCCchhHHHHHH
Q 039873 527 RIAEYILHMDPNDVGTYILLSNM--YAKEKRWDGVSKIRK 564 (709)
Q Consensus 527 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 564 (709)
+.++++++++|++...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777777766666 667777777777766
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00019 Score=60.97 Aligned_cols=91 Identities=7% Similarity=-0.065 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-C----hHHHHH
Q 039873 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-G----LEHYTC 479 (709)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~----~~~~~~ 479 (709)
|..+...|.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|++.++..++...-.+ + ...|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 33344444444444444444444444 2232 23344444444444444444444444433111000 0 123444
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 039873 480 IVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~ 498 (709)
+...|...|++++|++.|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4455555555555555544
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.79 E-value=7.6e-05 Score=63.35 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhh
Q 039873 480 IVGLLSKAGLLDEAEKFMRST-PVKWD-V---VAWHTLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYA 551 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~~-~~~pd-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 551 (709)
+...+.+.|++++|.+.|+.. ...|+ . ..|..+...+...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445566667777777666543 11232 2 466666677777888888888888888887777 666777888888
Q ss_pred hcCCchhHHHHHHHHHh
Q 039873 552 KEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 552 ~~g~~~~a~~~~~~m~~ 568 (709)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877765
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.00011 Score=62.99 Aligned_cols=99 Identities=10% Similarity=-0.141 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 039873 438 HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNA 515 (709)
Q Consensus 438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~ 515 (709)
...+..+...+...|++++|...|...+... +.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444445555555555555555555544321 122445555555666666666666555432 1223 36677777777
Q ss_pred HHhcCCchHHHHHHHHHHhcCCC
Q 039873 516 SRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 516 ~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
+...|+++.|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77788888888888888777765
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.77 E-value=8.9e-05 Score=62.77 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------chhHHH
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND-------VGTYIL 545 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 545 (709)
..+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++..|++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35666777778888888888877643 1223 57778888888889999999999999999887765 778899
Q ss_pred HHHHhhhcCCchhHHHHHHHHHhC
Q 039873 546 LSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 546 l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998763
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.75 E-value=4.3e-05 Score=70.84 Aligned_cols=145 Identities=11% Similarity=-0.011 Sum_probs=76.8
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCC-CC--------------hhh
Q 039873 177 VELYTKCLDVEMAKRLLDLLPGY---DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVR-WD--------------SVT 238 (709)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--------------~~t 238 (709)
+......|+++.|.+.++.-... ....|..+...+.+.|++++|+..|.+..+.... |+ ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444556666666666543321 3445777788888999999999999988764221 11 134
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHc
Q 039873 239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQN 315 (709)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 315 (709)
+..+..++...|++++|...+..+++.. +.+...+..+..+|...|++++|...|++..+ .+...+..+...+...
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 5555555556666666666666665553 33455555555666666666666666655432 2344555555555554
Q ss_pred CCHhHHH
Q 039873 316 EYFEEAL 322 (709)
Q Consensus 316 g~~~~A~ 322 (709)
++.+++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 4444444
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.74 E-value=0.0029 Score=63.04 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=128.8
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-HHHHHHHH
Q 039873 388 IEAANKVFSDMR---YRDIITWNAMICGYSHHGL--GREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL-VQEGFYYL 461 (709)
Q Consensus 388 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~ 461 (709)
+++++.+++.+. .++..+|+--...+...|+ +++++++++++.+.. +-|...|+.-.......|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 3577889888888888884 899999999999853 3356677776666777787 68999999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 039873 462 NHLMKQIGIVPGLEHYTCIVGLLSKA--------------GLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH------ 519 (709)
Q Consensus 462 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~------ 519 (709)
..+++. ..-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 244566777666666655 4578888887643 2344 588887665555444
Q ss_pred -----CCchHHHHHHHHHHhcCCCCchhHHHHHHH---hhhcCCchhHHHHHHHHHh
Q 039873 520 -----QNYGFGRRIAEYILHMDPNDVGTYILLSNM---YAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 520 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~ 568 (709)
+.++++++.++++++++|++.-.+..++.. ....|..++....+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457899999999999999986555444332 2346777888888888875
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.73 E-value=0.00022 Score=62.80 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHH
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEER-PNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTC 479 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 479 (709)
++..+...|...|++++|++.+++..+..-. ++. .++..+...+...|++++|...++...+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------- 80 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence 5566666666777777777777666542100 110 1333444444445555555554444332110
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC------CCchhHHHHHHHhhh
Q 039873 480 IVGLLSKAGLLDEAEKFMRSTPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP------NDVGTYILLSNMYAK 552 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~ 552 (709)
..+..+ ...++..+...+...|++++|...++++++..+ .....+..++.+|..
T Consensus 81 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 81 -------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 111000 133455566666677777777777777665421 123467788888889
Q ss_pred cCCchhHHHHHHHHHh
Q 039873 553 EKRWDGVSKIRKLMKV 568 (709)
Q Consensus 553 ~g~~~~a~~~~~~m~~ 568 (709)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999888887764
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.72 E-value=0.0003 Score=57.43 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=44.1
Q ss_pred hHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 039873 373 IVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP---NHVTFVGVLS 446 (709)
Q Consensus 373 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~ 446 (709)
.++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+. .| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHH
Confidence 334444445555555555555554433 123344555555555555555555555555542 22 2334444444
Q ss_pred HHhcc-ccHHHHHHHHHHH
Q 039873 447 ACGHL-GLVQEGFYYLNHL 464 (709)
Q Consensus 447 a~~~~-g~~~~a~~~~~~~ 464 (709)
.+... |++++|.+.+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 55555 5555555555544
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00071 Score=71.15 Aligned_cols=117 Identities=9% Similarity=-0.080 Sum_probs=72.7
Q ss_pred HHhcCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHH
Q 039873 382 YAKGGNIEAANKVFSDMRY-----R----DIITWNAMICGYSHHGLGREALTLFQNMLAA--EE--RPN-HVTFVGVLSA 447 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~pd-~~t~~~ll~a 447 (709)
+...|+.+.|..++..... . -..++..+...|...|++++|..++++.... +. +|. ..++..+...
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 3344556666655554431 1 1235666777788888888888887776542 11 222 2366677778
Q ss_pred HhccccHHHHHHHHHHHHHhhCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGIVPG-----LEHYTCIVGLLSKAGLLDEAEKFMR 498 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~ 498 (709)
|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888888888888776543221221 2456667777778888888877643
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00024 Score=75.47 Aligned_cols=124 Identities=11% Similarity=-0.005 Sum_probs=89.5
Q ss_pred HhccccHHHHHHHHHHHHHhhCC--CC---C-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------C-CCCC-HHHHHH
Q 039873 448 CGHLGLVQEGFYYLNHLMKQIGI--VP---G-LEHYTCIVGLLSKAGLLDEAEKFMRST--------P-VKWD-VVAWHT 511 (709)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~--~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~pd-~~~~~~ 511 (709)
+...|++++|..+++.......- .| + ..+++.|..+|...|++++|+.++++. + ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666543221 12 1 346777777888888888887775532 2 2344 667888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh-----cCCCCchh---HHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 512 LLNASRVHQNYGFGRRIAEYILH-----MDPNDVGT---YILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 512 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
|...|...|++++|+.+++++++ ++|+.+.+ ...|...+...|++++|..++.++++...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999876 46766543 45777888899999999999999987543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.70 E-value=0.00027 Score=62.20 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=69.9
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN---- 437 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd---- 437 (709)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.+++.....- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988763 22 14788899999999999999999999875210 111
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 438 HVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
...+..+...+...|++++|...++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23455556666777777777777766543
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.68 E-value=0.00044 Score=58.33 Aligned_cols=114 Identities=8% Similarity=-0.100 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL 483 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 483 (709)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.....-.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 71 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN------------ 71 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc------------
Confidence 355666666667777777777777766632 2234455555556666666666666666554421110
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873 484 LSKAGLLDEAEKFMRSTPVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY 550 (709)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 550 (709)
.++ ..+|..+...+...|+++.|...++++++..| ++.....+..++
T Consensus 72 -------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 72 -------------------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred -------------------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 111 44555566666666777777777777776666 344444444433
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.00021 Score=62.41 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh--------CCCCCC-HHHH----HHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRS--------TPVKWD-VVAW----HTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~--------~~~~pd-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 542 (709)
.|..+..++.+.|++++|+..+++ ..+.|| ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 455555555556665555555432 234777 6788 889999999999999999999999999988765
Q ss_pred HH
Q 039873 543 YI 544 (709)
Q Consensus 543 ~~ 544 (709)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00026 Score=72.78 Aligned_cols=137 Identities=12% Similarity=-0.034 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHH
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIV 481 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 481 (709)
...|..+...|.+.|++++|++.|++..+. .|+.. .....+++. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 346777888888889999999888887662 11100 000111111 1112 245788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873 482 GLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV 559 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 559 (709)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743 44554 788888999999999999999999999999999999999999999988888777
Q ss_pred HH
Q 039873 560 SK 561 (709)
Q Consensus 560 ~~ 561 (709)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.64 E-value=0.00018 Score=60.46 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=44.6
Q ss_pred HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 039873 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGF 524 (709)
Q Consensus 447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~ 524 (709)
.+.+.|++++|...|+..++. .+.+...|..+..++.+.|++++|+..+++. .+.| +...|..+...+...|++++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444444332 1112334444445555555555555554422 1233 35566666666777777777
Q ss_pred HHHHHHHHHhcCCCC
Q 039873 525 GRRIAEYILHMDPND 539 (709)
Q Consensus 525 a~~~~~~~~~~~p~~ 539 (709)
|+..++++++.+|++
T Consensus 104 A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 104 ALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCcCC
Confidence 777777777776654
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=3e-05 Score=63.83 Aligned_cols=93 Identities=13% Similarity=-0.062 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------chhHH
Q 039873 473 GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND------VGTYI 544 (709)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 544 (709)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677778888888888888887643 2234 57888889999999999999999999999999988 77788
Q ss_pred HHHHHhhhcCCchhHHHHHHH
Q 039873 545 LLSNMYAKEKRWDGVSKIRKL 565 (709)
Q Consensus 545 ~l~~~~~~~g~~~~a~~~~~~ 565 (709)
.++.++...|++++|.+.++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777655543
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=0.0025 Score=69.26 Aligned_cols=170 Identities=13% Similarity=0.077 Sum_probs=134.5
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039873 385 GGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGL----------GREALTLFQNMLAAEERP-NHVTFVGVLSACGH 450 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~ 450 (709)
...-++|.+.++++.. .+...|+.--..+...|+ ++++++.++++.+. .| +..+|..-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3445677888887763 355678877667777676 89999999999984 45 55688887788888
Q ss_pred cc--cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 039873 451 LG--LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG-LLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH------ 519 (709)
Q Consensus 451 ~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~------ 519 (709)
.+ +++++.+.++.+.+. -.-+...|+.-..++.+.| .++++++.++++ ...| |..+|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 88 779999999999874 2345667888788888889 899999998765 3344 588898887776653
Q ss_pred --------CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873 520 --------QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG 558 (709)
Q Consensus 520 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 558 (709)
+.++++.+.++++++++|++..+|.-+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.58 E-value=0.0009 Score=56.45 Aligned_cols=69 Identities=7% Similarity=-0.113 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHH
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYI 544 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 544 (709)
.+..+...|.+.|++++|.+.+++. ...|+ ...+..+...+...|++++|...++++++..|+++....
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 3444445555555555555554432 11122 445566666777778888888888888887777654433
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00017 Score=73.17 Aligned_cols=147 Identities=13% Similarity=-0.046 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL 483 (709)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 483 (709)
..|..+...+.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 4566777788889999999999999877 4565442 234455555443221 1267788889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh-hhcCCchhHH
Q 039873 484 LSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY-AKEKRWDGVS 560 (709)
Q Consensus 484 ~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 560 (709)
|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887743 2334 4788888889999999999999999999999999888888888874 4557778888
Q ss_pred HHHHHHHhCC
Q 039873 561 KIRKLMKVRK 570 (709)
Q Consensus 561 ~~~~~m~~~~ 570 (709)
+.++.|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888887543
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.56 E-value=0.00023 Score=63.30 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHH
Q 039873 403 IITWNAMICGYSHHGLGREALTLFQNMLAAE------ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEH 476 (709)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 476 (709)
...|......+.+.|++++|+..|++....- -.|+...+ ..+ .+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 3456666677777777777777777765520 01110000 000 0112346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc-hhHHHHH
Q 039873 477 YTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV-GTYILLS 547 (709)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 547 (709)
|..+..+|.+.|++++|+..++.. .+.|+ ...|..+..++...|++++|...++++++++|++. .....+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777888888888888888887643 23444 78888899999999999999999999999999887 3343443
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00027 Score=57.03 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999999999999999999999998875
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.54 E-value=0.00016 Score=73.47 Aligned_cols=113 Identities=5% Similarity=-0.092 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039873 440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVH 519 (709)
Q Consensus 440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~ 519 (709)
.+..+...+.+.|++++|...|...+.. .|+.. .+...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667788899999999999987653 34322 1233445555554432 13788888899999
Q ss_pred CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 520 QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 520 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|++++|+..++++++++|++...|..++.+|...|++++|.+.+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.52 E-value=7.8e-05 Score=62.28 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=54.0
Q ss_pred cccHHHHHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHH
Q 039873 451 LGLVQEGFYYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGR 526 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~ 526 (709)
.|++++|...|+..++. + -+.+...+..+..+|.+.|++++|.+.|++. ...|+ ...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555331 1 0112345556666666666666666666532 22333 667777777888888888888
Q ss_pred HHHHHHHhcCCCCchh
Q 039873 527 RIAEYILHMDPNDVGT 542 (709)
Q Consensus 527 ~~~~~~~~~~p~~~~~ 542 (709)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877543
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.44 E-value=0.00067 Score=69.65 Aligned_cols=113 Identities=8% Similarity=-0.021 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 039873 438 HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW-DVVAWHTLLNAS 516 (709)
Q Consensus 438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-d~~~~~~ll~~~ 516 (709)
...+..+...+.+.|++++|...|+..++... .. ......+++.+ ..| +..+|..+...+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 34566666677777888888777777654210 00 00011111111 122 367888889999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
.+.|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998763
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00035 Score=57.88 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788888888999999999999999999999999999999999999999999999999998875
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.00078 Score=52.65 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873 474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA 551 (709)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 551 (709)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777777788888888776643 2233 47778888888889999999999999999999998888888888876
Q ss_pred hcC
Q 039873 552 KEK 554 (709)
Q Consensus 552 ~~g 554 (709)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.35 E-value=0.0018 Score=68.73 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5778888999999999999999999999999999999999999999999999999999999864
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.34 E-value=0.00013 Score=63.66 Aligned_cols=64 Identities=11% Similarity=-0.033 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCC----------chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC-----------CchhHHHHHH
Q 039873 506 VVAWHTLLNASRVHQN----------YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK-----------RWDGVSKIRK 564 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~ 564 (709)
...|..+..++...++ +++|+..++++++++|++..+|..++++|...| ++++|.+.|+
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 4455444444444443 579999999999999999999999999999875 8999999999
Q ss_pred HHHhC
Q 039873 565 LMKVR 569 (709)
Q Consensus 565 ~m~~~ 569 (709)
+..+.
T Consensus 116 kAl~l 120 (158)
T 1zu2_A 116 QAVDE 120 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.22 E-value=0.0019 Score=51.01 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 504 WDVVAWHTLLNASRVHQN---YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 504 pd~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
+|+..|..+..++...++ .++|..+++++++++|+++.....++..+...|++++|...|+.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888887765554 79999999999999999999999999999999999999999999987654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0012 Score=53.88 Aligned_cols=65 Identities=8% Similarity=-0.065 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56678888899999999999999999999999999999999999999999999999999999864
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.12 E-value=0.00076 Score=71.60 Aligned_cols=114 Identities=10% Similarity=0.010 Sum_probs=84.3
Q ss_pred HHHhcCCHHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----CCCCc---hhHH
Q 039873 483 LLSKAGLLDEAEKFMRST--------P-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHM-----DPNDV---GTYI 544 (709)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~--------~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 544 (709)
.+...|++++|+.++++. + ..|+ ..+++.|...|...|++++|+.++++++++ +|+++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999886532 1 2333 667889999999999999999999998873 45544 4688
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHh
Q 039873 545 LLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK 614 (709)
Q Consensus 545 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (709)
.|+.+|..+|++++|..++++..+--.+ . - ...||...++...+.+...+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------H-GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------h-CCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752110 0 1 1368988877666655554443
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.07 E-value=0.0016 Score=68.03 Aligned_cols=116 Identities=7% Similarity=-0.063 Sum_probs=83.4
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----CCCCc---hh
Q 039873 481 VGLLSKAGLLDEAEKFMRST------PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHM-----DPNDV---GT 542 (709)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~~------~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 542 (709)
+.-+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.++++++++ +|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777776532 11232 557788888898999999999999988763 44443 46
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHh
Q 039873 543 YILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK 614 (709)
Q Consensus 543 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (709)
|..|+.+|..+|++++|..++++..+--. + .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999998875211 0 011469999988888888887775
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.97 E-value=0.0062 Score=52.29 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=28.1
Q ss_pred cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh----cCCchhHHHHHHHHHhCC
Q 039873 519 HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK----EKRWDGVSKIRKLMKVRK 570 (709)
Q Consensus 519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 570 (709)
.+|.++|.+.++++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555555542 34555566666655 566666666666655544
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.92 E-value=0.00036 Score=70.91 Aligned_cols=434 Identities=10% Similarity=0.036 Sum_probs=263.2
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 039873 66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSC 145 (709)
Q Consensus 66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~ 145 (709)
..+.+|+.|..++.+.+++.+|.+.|-+ ..|...|..+|.+..+.|.+++-+..+.-.+ +..- ++..=+.++-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCC--STTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhc--ccccHHHHHHHH
Confidence 3567888888888888888888877643 4566778888999999999998888877555 3322 444456788888
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CCc
Q 039873 146 SRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG------------------------YDV 201 (709)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~ 201 (709)
++.+++.+-+++.. .|+..-.....+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 88887765443322 35554455566666677777777777776641 477
Q ss_pred ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 039873 202 FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMY 281 (709)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 281 (709)
.+|-.+-.+|+..+.+.-|.-.--.+.- .|| -...++.-|-..|.+++-..+++..+... .....+++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 8899999999999998887766555542 222 23345566788888888888887766322 34677888888889
Q ss_pred HhcCChHHHHHHHHhccC----C-------CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhcc
Q 039873 282 GKCGKFSNAKKVFEGLET----R-------NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGL 350 (709)
Q Consensus 282 ~~~g~~~~A~~~~~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 350 (709)
+|- +.++-.+-++..-. | ....|.-++-.|.+-.+++.|... |.+. .|+...-..+.....+.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGC
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHc
Confidence 886 44444444443222 1 345799999999999999877643 2221 12222222223333344
Q ss_pred CChhHHHHHHHHHHHhCCCCChhHHhH-------------HHhHHHhcCCHHHHHHHHhhcCCCChhhHH-HHHHHHHHc
Q 039873 351 SALRHGDLLHAHIEKSGFKEHLIVGNA-------------LINMYAKGGNIEAANKVFSDMRYRDIITWN-AMICGYSHH 416 (709)
Q Consensus 351 ~~~~~a~~i~~~~~~~g~~~~~~~~~~-------------li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~ 416 (709)
++.+.--+....-++ -.+...+- .++++.+.|++.-....+......|...-| ++-..|...
T Consensus 348 aN~EiyYKAi~FYL~----e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 348 ANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp SCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHH----hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 444332222222211 11222222 344555555555555555555555544333 444555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873 417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (709)
.+++. +..-+.+|-+-..+.-|.++ ++ .+-.+.-..-...|.+.++|+++.++
T Consensus 424 EDy~~-------------------LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 424 EDYQA-------------------LRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp TCCHH-------------------HHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred hhHHH-------------------HHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHHHHHHhcccHHHHHHH
Confidence 55432 22222223333333333211 11 12222333445678899999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHH
Q 039873 497 MRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKI 562 (709)
Q Consensus 497 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 562 (709)
.++-.+=.| .|...+..|+.+.++++++-..+.+ +...|...+-.|...=+.+-+.++
T Consensus 477 ~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 477 CKKDSLYKD------AMQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHhhccChHHHHHH
Confidence 654433222 2344567899999999999988876 345777777777777777766654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.89 E-value=0.0026 Score=49.51 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678888889999999999999999999999999999999999999999999999999998763
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.84 E-value=0.0012 Score=57.35 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=66.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH----------HHHHHHHHHHHhhCCCCC-hHHHHHHH
Q 039873 414 SHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQ----------EGFYYLNHLMKQIGIVPG-LEHYTCIV 481 (709)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~----------~a~~~~~~~~~~~~~~p~-~~~~~~li 481 (709)
.+.+++++|++.+++..+. .| +...|..+..++...+.++ +|+..|++.++ +.|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 4556677777777777763 44 4456666666666665543 44444444433 1222 23344444
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873 482 GLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK 561 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 561 (709)
.+|...|++ .|+.. ...|++++|++.|+++++++|++. .|...+.+ .++|.+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHh
Confidence 444333322 22210 012589999999999999999874 33332222 244555
Q ss_pred HHHHHHhC
Q 039873 562 IRKLMKVR 569 (709)
Q Consensus 562 ~~~~m~~~ 569 (709)
++-.....
T Consensus 140 l~~~~~~~ 147 (158)
T 1zu2_A 140 LHAEAYKQ 147 (158)
T ss_dssp HHHHHHHS
T ss_pred ccCccccc
Confidence 55544443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.75 E-value=0.0067 Score=48.57 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
+...|..+...|.+.|++++|++.|++..+. .| +...|..+..++...|++++|.+.++..++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445556666666666666666666666553 23 234555555666666666666666665544
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.73 E-value=0.022 Score=61.85 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=117.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccc----------HHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873 416 HGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGL----------VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484 (709)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 484 (709)
....++|++.++++.. +.|+.. .|+.--.++.+.|. ++++.+.++.+.+. .+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445789999999999 567654 45554555555666 89999999999874 234566788778888
Q ss_pred HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc------
Q 039873 485 SKAG--LLDEAEKFMRST-PVK-WDVVAWHTLLNASRVHQ-NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE------ 553 (709)
Q Consensus 485 ~~~g--~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 553 (709)
.+.| ++++|++.++++ ... .|..+|+.-.......| .++++.+.++++++.+|.|..+|.....++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999998865 222 36889999888888888 899999999999999999999999888888774
Q ss_pred --------CCchhHHHHHHHHHh
Q 039873 554 --------KRWDGVSKIRKLMKV 568 (709)
Q Consensus 554 --------g~~~~a~~~~~~m~~ 568 (709)
++++++.+.++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.71 E-value=0.021 Score=48.85 Aligned_cols=110 Identities=8% Similarity=-0.089 Sum_probs=75.3
Q ss_pred CCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHH
Q 039873 215 ECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK----CGKFSNA 290 (709)
Q Consensus 215 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 290 (709)
+++++|++.|++..+.| .|+.. +-..+...+.++.|.+.++...+.| +...+..|..+|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677788888777766 22322 5555556667777777777777765 55667777777776 6777788
Q ss_pred HHHHHhccC-CCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhCC
Q 039873 291 KKVFEGLET-RNVVLWTAMVAACFQ----NEYFEEALNLFCGMEYEA 332 (709)
Q Consensus 291 ~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 332 (709)
.+.|++..+ .+..++..|...|.. .++.++|++.|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 877777654 456667777777776 677777777777776655
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.034 Score=55.57 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=29.4
Q ss_pred CCChhhHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 039873 400 YRDIITWNAMICGYSH--HGL---GREALTLFQNMLAAEERPNH-VTFVGVLSAC 448 (709)
Q Consensus 400 ~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~ 448 (709)
..|...|...+.+... .+. ..+|..+|++..+ ..|+. ..+..+..++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3467777777765432 333 4789999999988 57873 3444433333
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.69 E-value=0.0048 Score=50.79 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
+...|..+...|...|++++|+..|++.... .| +...+..+..++...|++++|...|+...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555555555555555542 22 233444455555555555555555555443
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.67 E-value=0.1 Score=43.07 Aligned_cols=140 Identities=10% Similarity=-0.017 Sum_probs=99.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH
Q 039873 414 SHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (709)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+ |-..| ...||++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I----GkiFD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------cHhhhcHHHH
Confidence 3456777777777777653 23444555554444444445555555554 33333 2357788877
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873 494 EKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK 572 (709)
Q Consensus 494 ~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 572 (709)
.+.+-.++ .+......-+......|.-++-.++...++.-++.++....-++++|.+.|...+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777765 345556677788889999999999999987777778899999999999999999999999999999884
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.60 E-value=0.012 Score=61.35 Aligned_cols=92 Identities=10% Similarity=-0.004 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHHHHhhC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 039873 451 LGLVQEGFYYLNHLMKQIG--IVPG----LEHYTCIVGLLSKAGLLDEAEKFMRST---------PVKWD-VVAWHTLLN 514 (709)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~pd-~~~~~~ll~ 514 (709)
.|++++|..++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777777666554321 1222 245666677777777777777665432 12344 556777777
Q ss_pred HHHhcCCchHHHHHHHHHHh-----cCCCCchh
Q 039873 515 ASRVHQNYGFGRRIAEYILH-----MDPNDVGT 542 (709)
Q Consensus 515 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 542 (709)
.|...|++++|+.+++++++ ++|+.+.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 78888888888888877766 35665543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.57 E-value=0.0026 Score=66.31 Aligned_cols=83 Identities=8% Similarity=-0.009 Sum_probs=67.0
Q ss_pred hcCCHHHHHHHHHhC------CC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----CCCCc---hhHHHHH
Q 039873 486 KAGLLDEAEKFMRST------PV---KWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHM-----DPNDV---GTYILLS 547 (709)
Q Consensus 486 ~~g~~~~A~~~~~~~------~~---~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 547 (709)
..|++++|+.++++. -+ .|+ ..+++.|..+|...|++++|+.++++++++ +|+++ .+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888886532 12 233 567889999999999999999999999873 45544 4688999
Q ss_pred HHhhhcCCchhHHHHHHHHHh
Q 039873 548 NMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 548 ~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.15 Score=58.09 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=93.9
Q ss_pred HHhCCCccHHHH-HHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873 211 LIENECFRGGVE-VLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN 289 (709)
Q Consensus 211 ~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 289 (709)
....+++++|.+ ++..+ |+...+..++..+.+.|..+.|.++.+ +. ..-.....++|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHH
Confidence 344666666655 33111 111222555556666677666665542 11 112345667899999
Q ss_pred HHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 039873 290 AKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFK 369 (709)
Q Consensus 290 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 369 (709)
|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-..+...|.
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 999887764 567899999999999999999999988753 44455555556666665555555554441
Q ss_pred CChhHHhHHHhHHHhcCCHHHHHHHHhhc
Q 039873 370 EHLIVGNALINMYAKGGNIEAANKVFSDM 398 (709)
Q Consensus 370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 398 (709)
++.-...|.++|++++|.+++.++
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233444566667777776665443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.44 E-value=0.019 Score=59.76 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCc
Q 039873 476 HYTCIVGLLSKAGLLDEAEKFMRST---------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH-----MDPNDV 540 (709)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 540 (709)
+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ ++|+.+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4455555555555555555554321 12344 56677788888888888888888888776 467766
Q ss_pred hhHH
Q 039873 541 GTYI 544 (709)
Q Consensus 541 ~~~~ 544 (709)
.+-.
T Consensus 411 ~~~~ 414 (429)
T 3qwp_A 411 LIED 414 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.28 E-value=0.0084 Score=47.60 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=24.0
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCch-hHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 517 RVHQNYGFGRRIAEYILHMDPNDVG-TYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 517 ~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444 44444444444444444444444443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.07 E-value=0.021 Score=45.21 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc
Q 039873 480 IVGLLSKAGLLDEAEKFMRST-PVKW-DVV-AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW 556 (709)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~~-~~~p-d~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 556 (709)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|++...+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345667788888888887643 2234 366 78888888999999999999999999999988776622 444
Q ss_pred hhHHHHHHHH
Q 039873 557 DGVSKIRKLM 566 (709)
Q Consensus 557 ~~a~~~~~~m 566 (709)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.76 E-value=0.35 Score=55.09 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=103.1
Q ss_pred HHHhCCChhHHHH-HHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 039873 108 WYLHNGFLLETLK-LFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV 186 (709)
Q Consensus 108 ~~~~~g~~~~A~~-~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (709)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.. +. ..-......+|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCH
Confidence 3345677777766 44222 112233666666777777777765432 11 1123456678999
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcC
Q 039873 187 EMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSD 266 (709)
Q Consensus 187 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 266 (709)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999988774 567899999999999999999999998853 4455555556777777666666665554
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873 267 IEPDVFINSAMISMYGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 267 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 298 (709)
. ++.-..+|.+.|++++|.+++.++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 3444556777788888877765553
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.70 E-value=0.038 Score=47.47 Aligned_cols=65 Identities=9% Similarity=-0.057 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcC-C-CCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 504 WDVVAWHTLLNASRVHQ---NYGFGRRIAEYILHMD-P-NDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 504 pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
++..+.-.+..++.+.+ +.++|+.+++.+.+.+ | .+...+..|+-+|.+.|++++|++.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45566666666666666 5557777777777776 5 3456667777777888888888888877765
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.51 E-value=0.15 Score=50.95 Aligned_cols=132 Identities=8% Similarity=-0.030 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHH----hcCC-------HHHHHHH
Q 039873 434 ERPNHVTFVGVLSACGH-----LGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLS----KAGL-------LDEAEKF 496 (709)
Q Consensus 434 ~~pd~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~ 496 (709)
.+.|...|...+.+... .....+|..+|+++++. .|+ ...|..+.-+|. ..+. +.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566677777766432 23468899999998764 666 233333322221 1111 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 497 MRSTPV-KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 497 ~~~~~~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
...+.. ..++.+|..+...+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 223322 34588888887777788999999999999999997 4678889999999999999999999988764
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.15 E-value=0.072 Score=51.00 Aligned_cols=75 Identities=8% Similarity=-0.006 Sum_probs=62.7
Q ss_pred CCCC---HHHHHHHHHHHHh-----cCCchHHHHHHHHHHhcCCCC-chhHHHHHHHhhhc-CCchhHHHHHHHHHhCCC
Q 039873 502 VKWD---VVAWHTLLNASRV-----HQNYGFGRRIAEYILHMDPND-VGTYILLSNMYAKE-KRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 502 ~~pd---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~ 571 (709)
+.|+ ...|..|...|.+ -|+.++|++.|+++++++|+. ..+++.++..|+.. |+.+++.+.+++......
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3555 5677777777777 499999999999999999975 99999999999885 999999999999988766
Q ss_pred ccCCc
Q 039873 572 KKEPG 576 (709)
Q Consensus 572 ~~~~~ 576 (709)
...|+
T Consensus 272 ~~~P~ 276 (301)
T 3u64_A 272 ESVPH 276 (301)
T ss_dssp GGCSS
T ss_pred CCCCC
Confidence 54454
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.89 E-value=1.5 Score=38.61 Aligned_cols=129 Identities=7% Similarity=0.043 Sum_probs=76.1
Q ss_pred HHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHH
Q 039873 279 SMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDL 358 (709)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 358 (709)
+...++|+++.|.++.+.+ .+...|..+.....+.|+.+-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455778888888877766 4567788888888888888888888876542 3444444555566665555
Q ss_pred HHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039873 359 LHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNM 429 (709)
Q Consensus 359 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (709)
+-+.....| -++.-...+.-.|+++++.++|.+...-... +.....+|..+.|.++.+++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 555444444 1233344455567777777777655431111 11112245555566665544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.52 E-value=0.42 Score=40.95 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT 542 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 542 (709)
...+-.|.-+|.+.|++++|++.++.+++++|++..+
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3445556678899999999999999999999987543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.26 E-value=1.6 Score=38.35 Aligned_cols=129 Identities=9% Similarity=-0.037 Sum_probs=86.9
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHH
Q 039873 178 ELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQ 257 (709)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 257 (709)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788888888887766 3567899999999999999999999988753 4455555556677776666
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 039873 258 VHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGM 328 (709)
Q Consensus 258 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (709)
+-+.....|- +|.-...+.-.|+++++.++|.+....... +......|..+.|.++..++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 6555555541 455555666788888888888776542211 11112356667777776655
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.18 E-value=0.24 Score=38.64 Aligned_cols=76 Identities=8% Similarity=-0.043 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 472 PGLEHYTCIVGLLSKAGL---LDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 472 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
.+...+..+..++...++ .++|..++++. ...|+ +..+..+...+...|++++|+..++++++.+|+ ......+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 455667777777755444 67888887643 34555 667777777888999999999999999999987 3334444
Q ss_pred HH
Q 039873 547 SN 548 (709)
Q Consensus 547 ~~ 548 (709)
..
T Consensus 83 ~~ 84 (93)
T 3bee_A 83 IE 84 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.91 E-value=0.37 Score=38.44 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873 478 TCIVGLLSKAGLLDEAEKFMRST---------PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546 (709)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~~---------~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 546 (709)
-.|...+.+.|+++.|...|+.. +-.+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34444445555555555443321 0123467788888899999999999999999999999887664444
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.41 E-value=0.018 Score=58.78 Aligned_cols=238 Identities=12% Similarity=0.046 Sum_probs=149.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873 169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS 248 (709)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (709)
.+.+|+.|..++.+.|.+.+|.+-| +...|+..|..+|....+.|.+++-+..+...++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 3456666667776767666666554 2345666777778877788888777777665555422 22333566777777
Q ss_pred CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC------------------------CCHhh
Q 039873 249 LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET------------------------RNVVL 304 (709)
Q Consensus 249 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~ 304 (709)
.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 777655433321 34554455566666677777777777666541 35678
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873 305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384 (709)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 384 (709)
|-.+-.+|...+.+.-|.-.--.++ +.||. ...++.-|-..|.+++-..+++.-.... .....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 8888888888888876654443333 22332 3345556777787777777776655221 3567788888888887
Q ss_pred cCCHHHHHHHHhhcC----CC-------ChhhHHHHHHHHHHcCChHHHHH
Q 039873 385 GGNIEAANKVFSDMR----YR-------DIITWNAMICGYSHHGLGREALT 424 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 424 (709)
- ++++-.+-++... -| ....|.-++-.|.+..+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 3444444443322 12 44689999999998888887754
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.83 E-value=0.67 Score=38.16 Aligned_cols=90 Identities=8% Similarity=-0.088 Sum_probs=43.7
Q ss_pred hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCC
Q 039873 449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE---AEKFMRSTPV-K-W--DVVAWHTLLNASRVHQN 521 (709)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~-~-p--d~~~~~~ll~~~~~~g~ 521 (709)
.....+..+.+.+...... |. ++..+--.+..++.++.+..+ +..+++..-- . | .....-.|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3334444555555544332 22 455555555556666655544 4555543311 1 2 12222334445556666
Q ss_pred chHHHHHHHHHHhcCCCCc
Q 039873 522 YGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 522 ~~~a~~~~~~~~~~~p~~~ 540 (709)
++.|.+.++.+++.+|+|.
T Consensus 90 Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCCCH
Confidence 6666666666666666553
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.34 E-value=0.72 Score=36.71 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC-------CCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMD-------PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
+..-.-.|...+...|+++.|...++.+++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445567788889999999999999998742 34567889999999999999999999999875
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.10 E-value=4.7 Score=33.77 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCC-CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 504 WDVVAWHTLLNASRVHQ---NYGFGRRIAEYILHMDPN-DVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 504 pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
|+..+--.+..++.+.. +..+++.+++.+....|. .......|+-+|.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333333444444333 344566666666665553 233445566666777777777777666654
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.72 E-value=1.8 Score=47.78 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=50.7
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 514 NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
.-|...|+++.|+.+++++...-|.+..++..|+.+|.+.|+|+.|.-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 356778999999999999999999999999999999999999999999999986
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.65 E-value=6.2 Score=32.70 Aligned_cols=83 Identities=8% Similarity=-0.072 Sum_probs=46.6
Q ss_pred cCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHH
Q 039873 284 CGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHI 363 (709)
Q Consensus 284 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 363 (709)
||++......+-.+.. +....+..+..+..+|.-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444444444433322 223344455666667777776666666433 23455556666666777777777777776666
Q ss_pred HHhCC
Q 039873 364 EKSGF 368 (709)
Q Consensus 364 ~~~g~ 368 (709)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 66664
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.02 E-value=5.3 Score=32.79 Aligned_cols=86 Identities=13% Similarity=-0.036 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH---HHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHH
Q 039873 417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQE---GFYYLNHLMKQIGIVP--GLEHYTCIVGLLSKAGLLD 491 (709)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 491 (709)
.....+.+-|.+....|. |+..|--.+..++.++..... |+.+++...+. -.| .....-.|.-++.|.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 344555566666655553 665555556667776665544 77777776542 113 2233345566778888888
Q ss_pred HHHHHHHhC-CCCCC
Q 039873 492 EAEKFMRST-PVKWD 505 (709)
Q Consensus 492 ~A~~~~~~~-~~~pd 505 (709)
+|++.++.+ .++|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888887644 33454
No 236
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.78 E-value=4 Score=31.51 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+....||++.|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 23333333455678999999999999999999999988865 466777888777777777
Q ss_pred CCCCCCHHHHHH
Q 039873 432 AEERPNHVTFVG 443 (709)
Q Consensus 432 ~g~~pd~~t~~~ 443 (709)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 565555543
No 237
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.63 E-value=3.8 Score=31.61 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
.-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+....||++.|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44666666666666553 23333333455678999999999999999999999988765 577888888888878887
Q ss_pred CCCCCCHHHHHH
Q 039873 432 AEERPNHVTFVG 443 (709)
Q Consensus 432 ~g~~pd~~t~~~ 443 (709)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 565555543
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.76 E-value=34 Score=36.98 Aligned_cols=252 Identities=8% Similarity=-0.029 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC
Q 039873 272 FINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS 351 (709)
Q Consensus 272 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 351 (709)
..-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+-..| .........++....+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3444555666777788877776666 44455555556667777788777777777666554 233344556666665544
Q ss_pred ChhHH--HHHHHHHHHhC-----------CCCCh-hHHhHHHhHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHH
Q 039873 352 ALRHG--DLLHAHIEKSG-----------FKEHL-IVGNALINMYAKGGNIEAANKVFSDMRYRDII---TWNAMICGYS 414 (709)
Q Consensus 352 ~~~~a--~~i~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~ 414 (709)
.+... .+=+..+...| ++++. .....++..+.+-.. +....... .++.. ....-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 43221 11111222211 11111 111222222221111 11111111 11111 1111222333
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873 415 HHGLGREALTLFQNMLAAEERPNHVTF----VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL 490 (709)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 490 (709)
+ .+.+.|..+|......+ ..+.... ..+.......+...++...+..... ..++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCH
Confidence 3 37788999998886543 2232222 2222233444524455566665433 223333333344445577999
Q ss_pred HHHHHHHHhCCCCC-CHHHHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 039873 491 DEAEKFMRSTPVKW-DVVAWH-TLLNASRVHQNYGFGRRIAEYILH 534 (709)
Q Consensus 491 ~~A~~~~~~~~~~p-d~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 534 (709)
+.|...|+.++-.+ +..-|. =+..+....|+.++|..+++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999886432 212221 133366778999999999999875
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.80 E-value=27 Score=35.98 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHhhhC----CCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 039873 113 GFLLETLKLFKNMVSG----DNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFK 163 (709)
Q Consensus 113 g~~~~A~~~~~~m~~~----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (709)
|++++|++.+..+.+. ....-.......++..|...++++...+....+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6788888877666421 12233455577788888888888877666555443
No 240
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.04 E-value=24 Score=38.25 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh---
Q 039873 308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK--- 384 (709)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--- 384 (709)
....+.-.|+++.|++++.+. ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455667789999999887644 24455556555554433221 11111110 01 11 2224566777765
Q ss_pred cCCHHHHHHHHhhcC
Q 039873 385 GGNIEAANKVFSDMR 399 (709)
Q Consensus 385 ~g~~~~A~~~f~~~~ 399 (709)
..+..+|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 567777777776654
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.50 E-value=8.4 Score=32.63 Aligned_cols=106 Identities=6% Similarity=0.074 Sum_probs=60.6
Q ss_pred CCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HhccccHHHHHHHHHHHHH
Q 039873 400 YRDIITWNAMICGYSHHGLG------REALTLFQNMLAAEERPNHV----TFVGVLSA---CGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~----t~~~ll~a---~~~~g~~~~a~~~~~~~~~ 466 (709)
..|..+|-..+....+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888888888774 666521 11111111 1122445555555554433
Q ss_pred hhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 467 QIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 467 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
. .-. =...|-....--.++|++..|.+++.+++.+.|...
T Consensus 89 ~-hKk---------------------------------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 N-CKK---------------------------------FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp H-CTT---------------------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred H-hHH---------------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 1 111 144444444444556777777777777777666543
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.47 E-value=28 Score=33.77 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHH----HHHHHhCCCCCChhhHHHHHHHHh
Q 039873 172 VRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEV----LGKMVSGSVRWDSVTYVNAFGLSA 247 (709)
Q Consensus 172 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 247 (709)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345556667888888888887643 23456667887666654 455566788888888888887776
Q ss_pred cCCCcH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHc---CC
Q 039873 248 SLKDLK-LGLQVHSQML----KSD--IEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQN---EY 317 (709)
Q Consensus 248 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 317 (709)
....-+ .-.++...++ +.| -..|......+...|.+.|++.+|+.-|-.-...|...+-.|+.-+.+. |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543222 2233444444 333 2247788899999999999999999988633323455555555544444 55
Q ss_pred HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873 318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE 364 (709)
Q Consensus 318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 364 (709)
..++--+.- ..++ -+...+++..|..++....
T Consensus 184 ~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 444322221 1222 2335667777777776554
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.76 E-value=58 Score=36.86 Aligned_cols=294 Identities=11% Similarity=-0.017 Sum_probs=144.5
Q ss_pred HHHHHHHHhCCCccHH-HHHHHHHHhCCCCCChhhHHH-HHHHHhcCCCcHHHHHHHHHHHHcC--CCCchHHHHHHHHH
Q 039873 205 NSVLNGLIENECFRGG-VEVLGKMVSGSVRWDSVTYVN-AFGLSASLKDLKLGLQVHSQMLKSD--IEPDVFINSAMISM 280 (709)
Q Consensus 205 ~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~ 280 (709)
.++.+++...|--.+. +.......-.. + +..-+.+ .--+....|+.+++..++...+..+ -.+.+.....+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA-Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC-C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc-c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3566778777765443 22111111110 1 1111222 1223456788888877776654421 12223444455555
Q ss_pred HHhcCChHHHHHHHHhcc-CCC----------HhhHHHHHHHHHHcCC-HhHHHHHHHHHHhCCCCCCccc--hH--HHH
Q 039873 281 YGKCGKFSNAKKVFEGLE-TRN----------VVLWTAMVAACFQNEY-FEEALNLFCGMEYEAIRPNEFT--FA--VML 344 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~-~~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t--~~--~ll 344 (709)
...+|.-+++..++.... ..+ +..-.++.-|++-.|. -+++.+.+..+.... +..+ .. ++.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALG 497 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMG 497 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHh
Confidence 666676666776655533 222 1112233334433343 246677777766532 2111 11 222
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHH--hcCCHHHHHHHHhhcC-CCCh-hhHH---HHHHHHHHcC
Q 039873 345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYA--KGGNIEAANKVFSDMR-YRDI-ITWN---AMICGYSHHG 417 (709)
Q Consensus 345 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~~~-~~~~-~~~~---~li~~~~~~g 417 (709)
..+...|+-+....++..+.+. .+..+...++-+++ -.|+.+.+..+.+.+. ..|. +-|. ++..+|+-.|
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 2345667777777777777653 23333333444443 5677776666666554 2332 2333 3345677778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH-HHHHHH
Q 039873 418 LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL-DEAEKF 496 (709)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~ 496 (709)
+.....++++.+.... ..+......+.-+....|+.+.+.++++.+.+ ...|.+....++.-+....|.. .+|.+.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 8766666888877631 22222222222233345555555555554432 2345555455555555555553 566777
Q ss_pred HHhCCCCCCHHHH
Q 039873 497 MRSTPVKWDVVAW 509 (709)
Q Consensus 497 ~~~~~~~pd~~~~ 509 (709)
+..+...+|..+-
T Consensus 652 L~~L~~D~d~~Vr 664 (963)
T 4ady_A 652 LDPLTKDPVDFVR 664 (963)
T ss_dssp HHHHHTCSSHHHH
T ss_pred HHHHccCCCHHHH
Confidence 6666445554433
No 244
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.58 E-value=5 Score=38.40 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=27.1
Q ss_pred hHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Q 039873 405 TWNAMICGYSH-----HGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGH-LGLVQEGFYYLNHLMK 466 (709)
Q Consensus 405 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~ 466 (709)
.|..+...|.+ -|+.++|.++|++.++ +.|+ ..++......++. .|+.+++.+.+++.+.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 44444444444 2455555555555554 3332 3334444444444 2555555555555443
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.67 E-value=40 Score=34.70 Aligned_cols=308 Identities=12% Similarity=0.058 Sum_probs=148.6
Q ss_pred CCccHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHc-CCCCchHHHHHHHH----HHHhc
Q 039873 215 ECFRGGVEVLGKMVSG-----SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKS-DIEPDVFINSAMIS----MYGKC 284 (709)
Q Consensus 215 g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~----~y~~~ 284 (709)
|++++|++-+..+.+. ...........++..|...++++...+.+..+.+. |..+. ....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 6788888877666542 23334455777888888888888776666555443 32221 1222332 22222
Q ss_pred CChH--HHHHHHHhccC---CC-------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873 285 GKFS--NAKKVFEGLET---RN-------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA 352 (709)
Q Consensus 285 g~~~--~A~~~~~~m~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 352 (709)
...+ .-..+.+.... .- ......|...|-..|++.+|.+++.++..+-...+....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------ 175 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------ 175 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH------------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH------------
Confidence 2222 22222222221 10 012234556666777777777777776542111111100
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--------CC--hhhHHHHHHHHHHcCChHHH
Q 039873 353 LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--------RD--IITWNAMICGYSHHGLGREA 422 (709)
Q Consensus 353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~--~~~~~~li~~~~~~g~~~~A 422 (709)
-..++...+..|...+++..|..++.++.. |+ ..-+..++..+...+++.+|
T Consensus 176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 012233344555566666666665555421 11 12445555666667777777
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHH----H--HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc--CCHHHH
Q 039873 423 LTLFQNMLAA-EERPNHVTFVGVLS----A--CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA--GLLDEA 493 (709)
Q Consensus 423 ~~~~~~m~~~-g~~pd~~t~~~ll~----a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A 493 (709)
.+.|.+.... .+.-|...+..++. . .+..+. +-..+......+ ..-++...|..++.+|... .+++.+
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~--~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~ 314 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN--LQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIV 314 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS--TTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHH
Confidence 7766666431 01112221111111 1 111111 111122222222 2335667888899988764 457777
Q ss_pred HHHHHhCCCCCC---------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873 494 EKFMRSTPVKWD---------VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK 564 (709)
Q Consensus 494 ~~~~~~~~~~pd---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 564 (709)
.+.|...- .++ ...|..|......|+- ..+ ..|-+...+..++..+.- ..+++.....
T Consensus 315 ~~~~~~~L-~~~~~~~~~~~~~~~~~~L~~~v~ehnl--------~~i--~k~Ys~I~l~~la~lL~l--~~~evE~~ls 381 (445)
T 4b4t_P 315 QKTYEPVL-NEDDLAFGGEANKHHWEDLQKRVIEHNL--------RVI--SEYYSRITLLRLNELLDL--TESQTETYIS 381 (445)
T ss_dssp HHHTCSST-TTCCSSCCCSCSSHHHHHHHHHHHHHHH--------HHH--HHHEEEEEHHHHHHHHTS--CHHHHHHHHH
T ss_pred HHHHHHHh-cccchhhhcchhhHHHHHHHHHHHHHHH--------HHH--HHHhceeeHHHHHHHhCc--CHHHHHHHHH
Confidence 77765431 122 2345555554444320 011 122233445555555532 3578888888
Q ss_pred HHHhCC
Q 039873 565 LMKVRK 570 (709)
Q Consensus 565 ~m~~~~ 570 (709)
.|...|
T Consensus 382 ~mI~~g 387 (445)
T 4b4t_P 382 DLVNQG 387 (445)
T ss_dssp HHHHHT
T ss_pred HHHHCC
Confidence 887654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.37 E-value=7.2 Score=33.65 Aligned_cols=112 Identities=9% Similarity=-0.028 Sum_probs=59.6
Q ss_pred HHhHHHhcCCHHHHHHHHhhcC-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HHHH
Q 039873 378 LINMYAKGGNIEAANKVFSDMR-----YRDI-------ITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPNHV-TFVG 443 (709)
Q Consensus 378 li~~y~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~-t~~~ 443 (709)
-+..+...|.++.|.-+.+.+. .+++ .+...+..++...|++.+|...|++.++.. .-|... +..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3566667788888877766543 2332 144556677777888888888888764321 111111 1111
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 039873 444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK 503 (709)
Q Consensus 444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 503 (709)
+- ...... ......++.+.---+...|.+.|++++|+.+++.+|.+
T Consensus 106 ~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 10 000000 00122233444444677788888888888888888754
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.05 E-value=14 Score=28.54 Aligned_cols=78 Identities=8% Similarity=-0.019 Sum_probs=57.0
Q ss_pred CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873 251 DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330 (709)
Q Consensus 251 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (709)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||++.|-++-.+ +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45667777666666653 333433445567789999999999999999999999888664 66777777777777766
Q ss_pred CC
Q 039873 331 EA 332 (709)
Q Consensus 331 ~g 332 (709)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.44 E-value=11 Score=31.24 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCCC-CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873 523 GFGRRIAEYILHMDPN-DVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568 (709)
Q Consensus 523 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 568 (709)
.+|+.+++.+.+.+|. ......-|+-++.+.|++++|++..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555554442 233444555555566666666555555543
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.10 E-value=4.2 Score=34.43 Aligned_cols=53 Identities=8% Similarity=-0.137 Sum_probs=42.7
Q ss_pred cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873 519 HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 571 (709)
.+|.++|.++|+.++.+...-+..+...+.--.++|+...|++++......+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37899999999999877544456666777777899999999999999887554
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.07 E-value=42 Score=32.53 Aligned_cols=168 Identities=8% Similarity=0.038 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHH----HHHHHhCCCCCCccchHHHHHHHhc
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNL----FCGMEYEAIRPNEFTFAVMLNSAAG 349 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~~~ 349 (709)
+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.++++|..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445555677778888887775432 2234445555444443 3333345666666666656555544
Q ss_pred cCChh-HHHHHHHHHH----HhC--CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCh
Q 039873 350 LSALR-HGDLLHAHIE----KSG--FKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHH---GLG 419 (709)
Q Consensus 350 ~~~~~-~a~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~ 419 (709)
...-+ .-..+...++ +.| -.-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 32111 1123333333 332 2246778888999999999999999887633323455555555444443 433
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873 420 REALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQ 467 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 467 (709)
.++-- ..-..+| -+.-.|++..|..+|+...++
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33211 1112222 234567888888888876554
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.21 E-value=46 Score=32.51 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHH----HHHHhCCCCCChhhHHHHHHHHhc
Q 039873 173 RNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL----GKMVSGSVRWDSVTYVNAFGLSAS 248 (709)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 248 (709)
+.++..=|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44455667788888888887643 234566677776665554 555567888888888888887776
Q ss_pred CCCcH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHH
Q 039873 249 LKDLK-LGLQVHSQML----KSD--IEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEA 321 (709)
Q Consensus 249 ~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 321 (709)
...-+ .-..+...++ +.| -.-|......+...|.+.+++.+|+.-|---..+.+..+..|+.-+.+.+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 65422 1223333333 333 2346777888889999999999998888432222235554444444444332222
Q ss_pred HHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873 322 LNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE 364 (709)
Q Consensus 322 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 364 (709)
-- +.-..+| -|...+++..|..++....
T Consensus 187 dl--------------fiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 PL--------------YCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HH--------------HHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 21 1222222 2344567777766655544
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.09 E-value=4 Score=41.52 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh-----CCCccCCc
Q 039873 509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV-----RKVKKEPG 576 (709)
Q Consensus 509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 576 (709)
...++.++...|+++++...+..+...+|-+...+..|+.+|.++|+..+|.+.|+...+ -|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345666777889999999999999999998888999999999999999999999888764 37766553
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.88 E-value=14 Score=28.58 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873 251 DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330 (709)
Q Consensus 251 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (709)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||++.|-++-.+ +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45667767666666653 333333445567789999999999999999999999887654 77888888877777776
Q ss_pred CC
Q 039873 331 EA 332 (709)
Q Consensus 331 ~g 332 (709)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.55 E-value=41 Score=37.13 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=44.2
Q ss_pred HHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873 244 GLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLE 298 (709)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 298 (709)
..|...|+++.|.++-...+..- +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44567788888888888887763 5566789999999999999999999988887
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.32 E-value=64 Score=37.96 Aligned_cols=144 Identities=13% Similarity=0.008 Sum_probs=87.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC----C---------------
Q 039873 342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR----D--------------- 402 (709)
Q Consensus 342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~--------------- 402 (709)
.++..+...+..+.+.++... ++.+....-.+..+|..+|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455556666777666665433 2334444455677888999999999999876410 0
Q ss_pred -------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHhccccHHHHHHHHHHHHHhhCCC
Q 039873 403 -------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH--V--TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIV 471 (709)
Q Consensus 403 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 471 (709)
..-|.-++..+.++|.++.++++-+...+..-+-+. . .|..+..++...|++++|...+-.+.. ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--
Confidence 012455667777778888887777666653211111 1 356677777788888888777655532 12
Q ss_pred CChHHHHHHHHHHHhcCCHHHH
Q 039873 472 PGLEHYTCIVGLLSKAGLLDEA 493 (709)
Q Consensus 472 p~~~~~~~li~~~~~~g~~~~A 493 (709)
-.......||..++..|.+++-
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhh
Confidence 2234566666666666655443
No 256
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=77.51 E-value=65 Score=32.71 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=48.3
Q ss_pred HHHHHHccCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC---ChhhHHHHHHHHhc
Q 039873 74 LVNLYAKCNQISIARQLFDNMRQRN---VVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEP---NEYIFSIVLSSCSR 147 (709)
Q Consensus 74 ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---~~~t~~~ll~~~~~ 147 (709)
.+...+..|+++-...+++.-..++ ...++. +..-++.|+.+-+..+++. |..+ |..-.+ .|...+.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t-~L~~A~~ 89 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKYLLQN-----KAKVNAKAKDDQT-PLHCAAR 89 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHHHHHH-----TCCSSCCCTTSCC-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCCC-HHHHHHH
Confidence 3444455666666666665533322 222222 2333445555443333332 2221 111122 2333334
Q ss_pred CCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhhCC
Q 039873 148 SGRGAEGRQCHGYVFKSGLVFCKY--VRNALVELYTKCLDVEMAKRLLDLLP 197 (709)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~ 197 (709)
.|+.+ +.+.+++.|..++.. ...+.+...++.|+.+....+++.-.
T Consensus 90 ~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 90 IGHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp HTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 45543 333444555544321 11223344455667776666666543
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.49 E-value=13 Score=28.88 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873 419 GREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG 482 (709)
Q Consensus 419 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 482 (709)
.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.+..+.|.. ...|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 33556666677777789999999999999999999999999999986654443 456777664
No 258
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.31 E-value=86 Score=34.00 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhc
Q 039873 100 VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSR 147 (709)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~ 147 (709)
..| ++|--+.|.|++++|.++.++.. ..+.--...|...+..++.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~--~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENK--ANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTG--GGC-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhh--hhHhhhhHHHHHHHHHHHh
Confidence 355 45666788889999988887664 1122122456666666653
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.25 E-value=49 Score=38.96 Aligned_cols=164 Identities=8% Similarity=-0.010 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChh
Q 039873 275 SAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALR 354 (709)
Q Consensus 275 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 354 (709)
..++..+.+.+..+.|.++..-.+ .+..+--.+..+|...|++++|.+.|++.. .|+..+......+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~--------- 884 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLRE--------- 884 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHH---------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcc---------
Confidence 345666777788877777655443 455444456678889999999999997653 233333222111100
Q ss_pred HHHHHHHHHHHh-CC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhc----CCCCh----hhHHHHHHHHHHcCChHHHHH
Q 039873 355 HGDLLHAHIEKS-GF-KEHLIVGNALINMYAKGGNIEAANKVFSDM----RYRDI----ITWNAMICGYSHHGLGREALT 424 (709)
Q Consensus 355 ~a~~i~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~ 424 (709)
+..+... .. ..-..-|.-++..+.+.|.++.+.+.-... ...+. ..|..+..++...|++++|..
T Consensus 885 -----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 885 -----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp -----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred -----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0111111 10 111233556677777777777766554322 22221 268889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHH
Q 039873 425 LFQNMLAAEERPNHVTFVGVLSACGHLGLVQE 456 (709)
Q Consensus 425 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 456 (709)
.+-.+.....+ ...+..++...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 99888765443 3456666666666666544
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.04 E-value=1e+02 Score=34.84 Aligned_cols=247 Identities=10% Similarity=-0.057 Sum_probs=125.7
Q ss_pred HHhcCChHHHHHHHHhccC----CCH--hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CCC---ccc--hHHH--HH
Q 039873 281 YGKCGKFSNAKKVFEGLET----RNV--VLWTAMVAACFQNEYFEEALNLFCGMEYEAI--RPN---EFT--FAVM--LN 345 (709)
Q Consensus 281 y~~~g~~~~A~~~~~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd---~~t--~~~l--l~ 345 (709)
....|+.+++..+++.-.. .+. ..-..+.-|....|..+++++++.......- .-+ ... -..+ --
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566788888888887654 222 2233344566677776778888777664311 000 111 1111 11
Q ss_pred HHhccCChhHHHHHHHHHHHhCCC-CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHH
Q 039873 346 SAAGLSALRHGDLLHAHIEKSGFK-EHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGRE 421 (709)
Q Consensus 346 ~~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 421 (709)
++...++ +++...+..++...-. ......-+|.-.|.-.|+-+....++..+.+ . ++.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 2222333 3444444444432211 0001222344445566777777777665432 2 22223334445557899988
Q ss_pred HHHHHHHHHHCCCCCCH-HHHH---HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873 422 ALTLFQNMLAAEERPNH-VTFV---GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFM 497 (709)
Q Consensus 422 A~~~~~~m~~~g~~pd~-~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (709)
+..+.+.+... .|. .-|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888763 232 2333 3445788889987777788877652 2223333333333334467766666666
Q ss_pred HhCCCCCCHHHHHHHHH--HHHhcCCc-hHHHHHHHHHH
Q 039873 498 RSTPVKWDVVAWHTLLN--ASRVHQNY-GFGRRIAEYIL 533 (709)
Q Consensus 498 ~~~~~~pd~~~~~~ll~--~~~~~g~~-~~a~~~~~~~~ 533 (709)
+.+.-..|..+-....- |..-.|+. ..+..+++.+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 53322234333332222 33333333 45666666665
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.83 E-value=12 Score=29.07 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=38.5
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 498 RSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 498 ~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
-.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+...+|--++
T Consensus 37 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 37 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 35567799999999999999999999999999988754322334565544
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.82 E-value=43 Score=31.29 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=25.2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChh--HHhHHHhHHHhcCCHHHHHHHHh
Q 039873 349 GLSALRHGDLLHAHIEKSGFKEHLI--VGNALINMYAKGGNIEAANKVFS 396 (709)
Q Consensus 349 ~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~ 396 (709)
..+......++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444456666666666554432 12233444555666666666655
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.30 E-value=18 Score=36.62 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH----hhCCCCChHH
Q 039873 407 NAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK----QIGIVPGLEH 476 (709)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 476 (709)
..++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|.+.|+...+ +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566677777788877777776632 33666777788888888888888777776533 4577777544
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.05 E-value=61 Score=31.65 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHH----HHHHhCCCCCCccchHHHHHHHhc
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLF----CGMEYEAIRPNEFTFAVMLNSAAG 349 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~~ 349 (709)
+.++..=|.+.+++++|.+++-+- ...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555577788888887765432 22344445544443333 333345566666665555555554
Q ss_pred cCChhH-HHHHHHHH----HHhC--CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHH
Q 039873 350 LSALRH-GDLLHAHI----EKSG--FKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREA 422 (709)
Q Consensus 350 ~~~~~~-a~~i~~~~----~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (709)
...-+- =..+.+.+ .+.| -.-|+.....+...|.+.+++.+|..-|-.-.++.+..+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 432111 12223333 2333 34567777888999999999999998885322333355555554444333211
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873 423 LTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466 (709)
Q Consensus 423 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 466 (709)
.+|.+.-..+|. |.-.+++..|..+++...+
T Consensus 185 ------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 4446788888877766554
No 265
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=72.74 E-value=55 Score=31.63 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=47.9
Q ss_pred CHHHHHHH---HHhCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873 489 LLDEAEKF---MRSTPVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR 563 (709)
Q Consensus 489 ~~~~A~~~---~~~~~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 563 (709)
+.....++ |....++|. ..++.+-++.+.+++|+..|..+.++++++.|... ..++|+++.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 33444444 556666665 66777788889999999999999999999998532 235677777
Q ss_pred HHHHhC
Q 039873 564 KLMKVR 569 (709)
Q Consensus 564 ~~m~~~ 569 (709)
..-...
T Consensus 251 ~~ce~~ 256 (325)
T 3mv2_A 251 NKADSM 256 (325)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 766543
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.43 E-value=36 Score=33.72 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=46.4
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRYRD---IITWNAMICGYSHHGL--GREALTLFQNMLAAEERPNHVT 440 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t 440 (709)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4677888999999999999999998663 2345555556655433 3457788888887775554433
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.68 E-value=73 Score=28.28 Aligned_cols=48 Identities=6% Similarity=-0.005 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 039873 67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGF 114 (709)
Q Consensus 67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 114 (709)
+..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 444444444444444443333333333334444333333444444443
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.21 E-value=31 Score=28.44 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873 421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG 482 (709)
Q Consensus 421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 482 (709)
+..+-++.+....+-|+.......|.||.+.+++..|.++|+....+.| +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555566666777899999999999999999999999999999866544 44556777664
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.82 E-value=97 Score=28.72 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCChHHHHHHHH
Q 039873 249 LKDLKLGLQVHSQMLKSDIEPDVF--INSAMISMYGKCGKFSNAKKVFE 295 (709)
Q Consensus 249 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 295 (709)
.++.....++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 334333445555566665544321 11122333344445444444444
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.99 E-value=83 Score=27.63 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=7.6
Q ss_pred CChhhHHHHHHHHhcCCC
Q 039873 133 PNEYIFSIVLSSCSRSGR 150 (709)
Q Consensus 133 p~~~t~~~ll~~~~~~~~ 150 (709)
++...-...+.++...++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.84 E-value=76 Score=29.83 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=24.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873 413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464 (709)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 464 (709)
+.+.|..++|++....-++.. +-|...=..++.-+|-.|+++.|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555555555431 223333334444455555555555555544
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=61.83 E-value=34 Score=28.21 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873 497 MRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS 547 (709)
Q Consensus 497 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 547 (709)
+-.+.+-|++.+..+-+.+|++.+|+..|.++++-+...-.+...+|--++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 335567899999999999999999999999999988754322234565544
No 273
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.88 E-value=74 Score=27.39 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccC-----CCH-------hhHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCcc-c
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLET-----RNV-------VLWTAMVAACFQNEYFEEALNLFCGMEYEA-IRPNEF-T 339 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~-t 339 (709)
+-.-+..+...|.++.|+-+.+-+.. +++ .+...+..++...+++..|...|++.++.. .-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33446667778888888877766431 332 244556678888899999999998865321 111111 1
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873 340 FAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR 399 (709)
Q Consensus 340 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 399 (709)
.+++-..-...+ ......+..+---+..+|.+.|+.++|+.+++.++
T Consensus 103 ~~~~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111100000000 01122334444556778888899999999988887
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.69 E-value=68 Score=30.37 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=5.6
Q ss_pred HhcCChHHHHHHHh
Q 039873 181 TKCLDVEMAKRLLD 194 (709)
Q Consensus 181 ~~~g~~~~A~~~f~ 194 (709)
+..|+.+-+..+++
T Consensus 70 ~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 70 ATLEDTKIVKILLF 83 (285)
T ss_dssp TTSSSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444333333
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.88 E-value=1.5e+02 Score=29.69 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=10.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 039873 409 MICGYSHHGLGREALTLFQNMLA 431 (709)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~ 431 (709)
++..|...|++.+|++++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444555554444444443
No 276
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=58.82 E-value=76 Score=26.15 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
...+--|.-|+.+.|+++.|++..+.+++.+|+|..
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 444555666888888888888888888888888743
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.78 E-value=93 Score=28.05 Aligned_cols=23 Identities=4% Similarity=0.045 Sum_probs=10.8
Q ss_pred HhCCCccHHHHHHHHHHhCCCCC
Q 039873 212 IENECFRGGVEVLGKMVSGSVRW 234 (709)
Q Consensus 212 ~~~g~~~~A~~l~~~m~~~g~~p 234 (709)
++.|+.+-...+++.+.+.|..+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Confidence 44455554444444444444433
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.70 E-value=1e+02 Score=27.78 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCChHHHHHHHHh
Q 039873 243 FGLSASLKDLKLGLQVHSQMLKSDIEPDVF--INSAMISMYGKCGKFSNAKKVFEG 296 (709)
Q Consensus 243 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~ 296 (709)
+...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344456678877777777766666544322 122334445566776666666554
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.67 E-value=65 Score=31.85 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCC---HhhHHHHHHHHHHcCC--HhHHHHHHHHHHhCCCCCC
Q 039873 274 NSAMISMYGKCGKFSNAKKVFEGLETRN---VVLWTAMVAACFQNEY--FEEALNLFCGMEYEAIRPN 336 (709)
Q Consensus 274 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd 336 (709)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4677888889999999999999998763 2344555555554433 3567788888887765443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.92 E-value=98 Score=27.59 Aligned_cols=87 Identities=9% Similarity=0.186 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEEEECC
Q 039873 507 VAWHTLLNASRVHQNYGFGRRIAEYILH--MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRN 584 (709)
Q Consensus 507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 584 (709)
-.|-.++..| ..++...+..+|..|.. ++-.-+..|...+..+...|++.+|.++++.-.+++.+|.
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~---------- 149 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY---------- 149 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH----------
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH----------
Confidence 3444444443 24446688999998876 5566778899999999999999999999998887665432
Q ss_pred EEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcc
Q 039873 585 TTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYV 619 (709)
Q Consensus 585 ~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (709)
+.+.....+...+|.+.+++
T Consensus 150 ---------------~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 150 ---------------NRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------HHHHHHHHHHHHHHHhcCCC
Confidence 22234455667778777773
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.32 E-value=23 Score=33.27 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 482 GLLSKAGLLDEAEKFMR-STPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 482 ~~~~~~g~~~~A~~~~~-~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
..+.+.|.+++|++... ...-+| |...-..|+.-++..|+++.|..-++...+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34567888998888754 332344 455666677788899999999999999999988643
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.59 E-value=71 Score=30.86 Aligned_cols=63 Identities=16% Similarity=0.309 Sum_probs=43.6
Q ss_pred hHHHhHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 039873 376 NALINMYAKGGNIEAANKVFSDMRYRDI---ITWNAMICGYSHHGL--GREALTLFQNMLAAEERPNH 438 (709)
Q Consensus 376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~ 438 (709)
+.++.=|...|+.++|.+.++++..|.. ....++..++-+.++ .+...+++..+...|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 5678888889999999999999986632 344555555555433 34566788888776654443
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.06 E-value=1.2e+02 Score=27.10 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=5.7
Q ss_pred hcCChHHHHHHHh
Q 039873 182 KCLDVEMAKRLLD 194 (709)
Q Consensus 182 ~~g~~~~A~~~f~ 194 (709)
+.|+.+-+..+++
T Consensus 118 ~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 118 QFGHTSIVAYLIA 130 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHh
Confidence 3444444444444
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.55 E-value=1.9e+02 Score=30.05 Aligned_cols=177 Identities=12% Similarity=0.126 Sum_probs=93.8
Q ss_pred hhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh-hhHHH-------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 039873 372 LIVGNALINMYAKGGNIEAANKVFSDMRYRDI-ITWNA-------MICGYSHHGLGREALTLFQNMLAAEERPNHV---- 439 (709)
Q Consensus 372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---- 439 (709)
..+.|.++..|...+.++.|..+..+..-|.. .+.+- +...+.-.+++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 45678888899999999999999998875532 22222 2355677899999999998877642 22211
Q ss_pred ---H--HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039873 440 ---T--FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLN 514 (709)
Q Consensus 440 ---t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~ 514 (709)
. |..++.-+ .|.+.+ ..+|. ..+.+.....|..|+.++ +.|++++-...++.-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 11111111 222221 11111 012111233466677765 6677766555554321 1
Q ss_pred HHHhcCCchHHHHHHHHHHh-----cCCCCchhHHHHHHHhhhcC--CchhHHHHHHHHHhCCC
Q 039873 515 ASRVHQNYGFGRRIAEYILH-----MDPNDVGTYILLSNMYAKEK--RWDGVSKIRKLMKVRKV 571 (709)
Q Consensus 515 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~ 571 (709)
.+.+.|.+...+++-..+.+ +... ..-..+.++..+.| ..++|..+.-.|...|.
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~--YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLT--YKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCC--SSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 23455666555544433322 2211 11123333333333 24678888888887764
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=49.20 E-value=1.3e+02 Score=26.81 Aligned_cols=20 Identities=5% Similarity=-0.004 Sum_probs=9.5
Q ss_pred HHHHHhcCChHHHHHHHhhC
Q 039873 177 VELYTKCLDVEMAKRLLDLL 196 (709)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~~ 196 (709)
+...++.|+.+-+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444455555555554443
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.75 E-value=89 Score=29.52 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=8.6
Q ss_pred HHHccCChHHHHHHHhc
Q 039873 77 LYAKCNQISIARQLFDN 93 (709)
Q Consensus 77 ~~~~~g~~~~A~~~f~~ 93 (709)
..++.|+.+-+..+++.
T Consensus 37 ~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33445555555555544
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.72 E-value=45 Score=30.93 Aligned_cols=54 Identities=7% Similarity=-0.139 Sum_probs=29.4
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCChhh-------HHHHHHHHh--cCCCcHHHHHHHHHH
Q 039873 209 NGLIENECFRGGVEVLGKMVSGSVRWDSVT-------YVNAFGLSA--SLKDLKLGLQVHSQM 262 (709)
Q Consensus 209 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 262 (709)
...++.|+.+....+++.+.+.|..++... .+.+..|+. +.|+.+-++.+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344566777776666666666555555322 233433332 456666666555544
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.22 E-value=2.9e+02 Score=29.68 Aligned_cols=395 Identities=7% Similarity=-0.035 Sum_probs=199.5
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCC
Q 039873 51 VIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDN 130 (709)
Q Consensus 51 ~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 130 (709)
++-..+.+..-. +....+-+.-+..+++.+++......|.. +..+...-.....+....|+..+|......+- ..|
T Consensus 57 ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW-~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTL--PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW-LTG 132 (618)
T ss_dssp HHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-SCS
T ss_pred HHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCC
Confidence 555555553211 02223445566777888999998887776 42344444446677888899888888777775 444
Q ss_pred CCCChhhHHHHHHHHhcCCCchHHH--HHHHHHHHhC-----------CCCc-hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 039873 131 LEPNEYIFSIVLSSCSRSGRGAEGR--QCHGYVFKSG-----------LVFC-KYVRNALVELYTKCLDVEMAKRLLDLL 196 (709)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~--~~~~~~~~~g-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~ 196 (709)
.........++..+.+.|.+.... +=+..+...| +.++ ......++..+.+- ..+.......
T Consensus 133 -~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~ 208 (618)
T 1qsa_A 133 -KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT 208 (618)
T ss_dssp -SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS
T ss_pred -CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc
Confidence 234456677777777655543321 1112222221 1111 11223333333322 2222222221
Q ss_pred CCCCcc---cHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHH----HHHHHHhcCCCcHHHHHHHHHHHHcCCCC
Q 039873 197 PGYDVF---EYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYV----NAFGLSASLKDLKLGLQVHSQMLKSDIEP 269 (709)
Q Consensus 197 ~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 269 (709)
. ++.. ....-+.-+.+. +++.|..+|....+.+ ..+..... .+.......+...++...+....... .
T Consensus 209 ~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~ 283 (618)
T 1qsa_A 209 G-ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (618)
T ss_dssp C-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred C-CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C
Confidence 1 1111 111123333343 7789999998886543 22333222 22223334443555666666554433 3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhccCCC--HhhHH-HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH
Q 039873 270 DVFINSAMISMYGKCGKFSNAKKVFEGLETRN--VVLWT-AMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS 346 (709)
Q Consensus 270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 346 (709)
+..+..-.+....+.|+++.|...|+.|.... ..-|. =+..++.+.|+.++|..+|+++... .+|-.++.+
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa 357 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA 357 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH
Confidence 33334455555667899999999999998642 12222 2334667889999999999998742 245444432
Q ss_pred HhccCChhHHHHHHHHHHHhCCCC---ChhH---HhHHHhHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCCh
Q 039873 347 AAGLSALRHGDLLHAHIEKSGFKE---HLIV---GNALINMYAKGGNIEAANKVFSDMRY-RDIITWNAMICGYSHHGLG 419 (709)
Q Consensus 347 ~~~~~~~~~a~~i~~~~~~~g~~~---~~~~---~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~ 419 (709)
.++|..... . .....+ .... .-.-+..+...|....|...+..+.. .+......+.......|.+
T Consensus 358 -~~Lg~~~~~-~------~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 358 -QRIGEEYEL-K------IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWW 429 (618)
T ss_dssp -HHTTCCCCC-C------CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCH
T ss_pred -HHcCCCCCC-C------CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCh
Confidence 222211000 0 000000 0000 11224456778999998887776543 3333333444445667777
Q ss_pred HHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH
Q 039873 420 REALTLFQNMLAAEE----RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE 475 (709)
Q Consensus 420 ~~A~~~~~~m~~~g~----~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 475 (709)
+.++....+....+. -|. .|..++...++.-.++..+- +.-+..+.++.|+..
T Consensus 430 ~~~v~~~~~~~~~~~~~~~~P~--~y~~~i~~~a~~~gv~~~ll-~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 430 DLSVQATIAGKLWDHLEERFPL--AYNDLFKRYTSGKEIPQSYA-MAIARQESAWNPKVK 486 (618)
T ss_dssp HHHHHHHHHTTCTTCHHHHSCC--TTHHHHHHHHTTSSSCHHHH-HHHHHHHHTTCTTCB
T ss_pred HHHHHHHHHHHhhcchhhhCCc--chHHHHHHHHHHcCCCHHHH-HHHHHHhCCCCCCCc
Confidence 777765544322210 111 24445555554444443322 222233357777643
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.75 E-value=76 Score=25.95 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=43.4
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRYRDI---ITWNAMICGYSHHGL--GREALTLFQNMLAAEERPN 437 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd 437 (709)
.+.++.=|...|+.++|.+.++++..|.. ....++..++-+.+. .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35677888889999999999999876532 344555556655432 3567778888877765443
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.70 E-value=67 Score=32.83 Aligned_cols=95 Identities=11% Similarity=-0.100 Sum_probs=59.2
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhhcCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH--
Q 039873 374 VGNALINMYAKGGNIEAANKVFSDMRY------RDIITWNAMICGYSHHGLGREALTLFQNMLA---AEERPNHVTFV-- 442 (709)
Q Consensus 374 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~-- 442 (709)
+...+.+.|.++|++++|.+.|.++.. .-+..|-.+|..+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445677777788888888887777652 2234666677777778888888888777653 23233322111
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhh
Q 039873 443 GVLSACGHLGLVQEGFYYLNHLMKQI 468 (709)
Q Consensus 443 ~ll~a~~~~g~~~~a~~~~~~~~~~~ 468 (709)
.-...+...+++.+|...|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11122455678888888887766543
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.35 E-value=1.5e+02 Score=25.86 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCC
Q 039873 269 PDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEY 317 (709)
Q Consensus 269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 317 (709)
+|..+....+..+.+.|..+....+.+.+..++...-...+.++...|.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444444444443333334444444444333333444444443
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.11 E-value=1.2e+02 Score=26.27 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=9.0
Q ss_pred HhcCChHHHHHHHhhC
Q 039873 181 TKCLDVEMAKRLLDLL 196 (709)
Q Consensus 181 ~~~g~~~~A~~~f~~~ 196 (709)
+..|+.+....+++.-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3456666666666543
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.52 E-value=2.2e+02 Score=28.64 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=69.1
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCCCCCCchh--HHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHh
Q 039873 37 LKHSADSKDLKLGKVIHAHLIITTESSRNENVV--LTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLH 111 (709)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 111 (709)
|...+..|+++ +...+++.|.. ++.. ...+.+...++.|+.+-+..+++.-.. +|...++.|. ..++
T Consensus 18 L~~Aa~~g~~~----~v~~Ll~~g~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLP----IVKNLLQRGAS---PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH-CAAR 89 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCC---SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH-HHHH
T ss_pred HHHHHHCCCHH----HHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH-HHHH
Confidence 33344456654 44445555654 3221 122345566777888888888875443 2333333333 3345
Q ss_pred CCChhHHHHHHHHhhhCCCCCCC---hhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCh
Q 039873 112 NGFLLETLKLFKNMVSGDNLEPN---EYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKY--VRNALVELYTKCLDV 186 (709)
Q Consensus 112 ~g~~~~A~~~~~~m~~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~ 186 (709)
.|+.+-+.-+++ .|..|+ ..-.+ .+...+..|+.+..+.+ ++.|...+.. ...+.+...++.|+.
T Consensus 90 ~g~~~~v~~Ll~-----~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~~A~~~g~~ 159 (437)
T 1n11_A 90 IGHTNMVKLLLE-----NNANPNLATTAGHT-PLHIAAREGHVETVLAL----LEKEASQACMTKKGFTPLHVAAKYGKV 159 (437)
T ss_dssp HTCHHHHHHHHH-----HTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHHh-----CCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHH----HhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence 566544333333 233332 22222 23334455666554443 4444432211 112234445567777
Q ss_pred HHHHHHHhhCCC
Q 039873 187 EMAKRLLDLLPG 198 (709)
Q Consensus 187 ~~A~~~f~~~~~ 198 (709)
+-+..+++.-..
T Consensus 160 ~~v~~Ll~~g~~ 171 (437)
T 1n11_A 160 RVAELLLERDAH 171 (437)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHhCCCC
Confidence 777777765443
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.55 E-value=1.5e+02 Score=25.56 Aligned_cols=19 Identities=5% Similarity=0.108 Sum_probs=11.2
Q ss_pred HHHccCChHHHHHHHhcCC
Q 039873 77 LYAKCNQISIARQLFDNMR 95 (709)
Q Consensus 77 ~~~~~g~~~~A~~~f~~~~ 95 (709)
..+..|+.+....+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3445666666666665543
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.49 E-value=1.2e+02 Score=27.20 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCCChhh--HHHHHHHHhcCCCcHHHHHHHHHHHHcCCC
Q 039873 223 VLGKMVSGSVRWDSVT--YVNAFGLSASLKDLKLGLQVHSQMLKSDIE 268 (709)
Q Consensus 223 l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 268 (709)
+++.+.+.|..++... -.+.+...+..|+.+.+.++.+.+++.|..
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3444445565554321 123344455667777776777777776643
No 296
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.02 E-value=81 Score=30.43 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873 497 MRSTPVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR 569 (709)
Q Consensus 497 ~~~~~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 569 (709)
|....++|. ..++.+-++.+.+++|+..|..+.++++++.|+.. ..++|+++...-...
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 555566664 56677778888999999999999999999987521 235577777666544
No 297
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=42.73 E-value=1.5e+02 Score=24.78 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873 508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541 (709)
Q Consensus 508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 541 (709)
..--|.-++.+.|+++.|++..+.+++.+|+|..
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3445666899999999999999999999998843
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.33 E-value=30 Score=32.18 Aligned_cols=52 Identities=8% Similarity=-0.077 Sum_probs=25.5
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCChh-------hHHHHHHHHh--cCCCchHHHHHHHHH
Q 039873 109 YLHNGFLLETLKLFKNMVSGDNLEPNEY-------IFSIVLSSCS--RSGRGAEGRQCHGYV 161 (709)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~ 161 (709)
.++.|+.+....+++.+. ..|..++.. -.+.|..++. +.|+.+.++.+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLL-THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHH-HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH-hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 345566666555555444 334333322 2233333332 456666666655543
No 299
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.44 E-value=89 Score=31.88 Aligned_cols=95 Identities=12% Similarity=-0.063 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH----
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT---- 478 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 478 (709)
++..+..-|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+.....++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 667788999999999999999999987544444 34677888889999999999999998765433334432221
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 039873 479 CIVGLLSKAGLLDEAEKFMRS 499 (709)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~ 499 (709)
+-.-.+...+++.+|-+.|-.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHH
Confidence 122233457889998877543
No 300
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=40.58 E-value=8.5 Score=23.81 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=8.5
Q ss_pred ccccccCCCC
Q 039873 699 QDGCCSCTDY 708 (709)
Q Consensus 699 ~~g~csc~~~ 708 (709)
.+|.||||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999976
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.18 E-value=1e+02 Score=30.20 Aligned_cols=15 Identities=0% Similarity=0.175 Sum_probs=7.2
Q ss_pred HhcCCHHHHHHHHhh
Q 039873 383 AKGGNIEAANKVFSD 397 (709)
Q Consensus 383 ~~~g~~~~A~~~f~~ 397 (709)
++.|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555555444443
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=38.51 E-value=2e+02 Score=25.18 Aligned_cols=30 Identities=7% Similarity=-0.035 Sum_probs=11.7
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873 400 YRDIITWNAMICGYSHHGLGREALTLFQNML 430 (709)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (709)
++|...-...+.++.+.+. .++...+.++.
T Consensus 154 d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3443333334444444443 23333333333
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.41 E-value=75 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=42.5
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 039873 375 GNALINMYAKGGNIEAANKVFSDMRYRD---IITWNAMICGYSHHGL--GREALTLFQNMLAAEERPN 437 (709)
Q Consensus 375 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd 437 (709)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567788888999999999999987653 2344555555555332 3456777777777664443
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.09 E-value=1.9e+02 Score=24.41 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHh--cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCcc
Q 039873 523 GFGRRIAEYILH--MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKK 573 (709)
Q Consensus 523 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 573 (709)
+.+.++|..+.. ++..-+..|...+..+...|++.+|.++++.-.+++.+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 348888888876 446667789999999999999999999999887765543
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.73 E-value=2.5e+02 Score=25.02 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcC
Q 039873 52 IHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNM 94 (709)
Q Consensus 52 ~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~ 94 (709)
+...+++.|......+.. ..+.+...++.|+.+-+..+++.-
T Consensus 26 ~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHcCCCcCccCCC-CCCHHHHHHHhCCHHHHHHHHhCC
Confidence 444555556541111111 123444556677877777777653
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.46 E-value=1.2e+02 Score=24.71 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---cccHHHHHHHHHhCCC--ccHHHHHHHHHHhCCCCC
Q 039873 173 RNALVELYTKCLDVEMAKRLLDLLPGYD---VFEYNSVLNGLIENEC--FRGGVEVLGKMVSGSVRW 234 (709)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 234 (709)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456777777788888888888776541 2233344444444432 345667777776666543
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.37 E-value=1.5e+02 Score=27.12 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=41.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873 410 ICGYSHHGLGREALTLFQNMLA--AEERP----NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL 483 (709)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 483 (709)
+..+..+.++++|.++.++... .++++ +.......+..-.....-.-+..+.+.+ . ..++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHHH
Confidence 4556666777777777666543 12222 1111122222222211112222222222 1 24455566677788
Q ss_pred HHhcCCHHHHHHHH
Q 039873 484 LSKAGLLDEAEKFM 497 (709)
Q Consensus 484 ~~~~g~~~~A~~~~ 497 (709)
+.|.|+-++|.++|
T Consensus 101 L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGLPEQALDLF 114 (235)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCChhHHHHHH
Confidence 88888888888875
No 308
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.39 E-value=1.1e+02 Score=30.05 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHh
Q 039873 382 YAKGGNIEAANKVFS 396 (709)
Q Consensus 382 y~~~g~~~~A~~~f~ 396 (709)
-+..|+.+-+..+++
T Consensus 180 A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 180 AMEFRNREALDLMMD 194 (364)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344455555555444
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.36 E-value=1.3e+02 Score=29.03 Aligned_cols=28 Identities=4% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCCCC
Q 039873 71 TNSLVNLYAKCNQISIARQLFDNMRQRN 98 (709)
Q Consensus 71 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~ 98 (709)
..+++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3567888888999999999999988664
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.11 E-value=2.4e+02 Score=24.12 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=39.9
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCcc
Q 039873 524 FGRRIAEYILH--MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKK 573 (709)
Q Consensus 524 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 573 (709)
....+|..|.. ++..-+..|...+..|...|++.+|.++++.-.+++.+|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 37778888875 456667788999999999999999999999888766543
No 311
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=31.08 E-value=17 Score=22.74 Aligned_cols=10 Identities=30% Similarity=1.062 Sum_probs=8.6
Q ss_pred ccccccchhH
Q 039873 665 NLRMCDDCHS 674 (709)
Q Consensus 665 ~l~~~~~~h~ 674 (709)
+.|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 7899999973
No 312
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.07 E-value=2e+02 Score=25.73 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.6
Q ss_pred hcCChHHHHHHHh
Q 039873 182 KCLDVEMAKRLLD 194 (709)
Q Consensus 182 ~~g~~~~A~~~f~ 194 (709)
+.|+.+-+..+++
T Consensus 53 ~~~~~~~v~~Ll~ 65 (237)
T 3b7b_A 53 ENNHLEAVKYLIK 65 (237)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHh
Confidence 3444444444443
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.32 E-value=1.3e+02 Score=27.71 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=14.8
Q ss_pred HHHHHhCCCccHHHHHHHHHHh
Q 039873 208 LNGLIENECFRGGVEVLGKMVS 229 (709)
Q Consensus 208 i~~~~~~g~~~~A~~l~~~m~~ 229 (709)
++.+....++++|++++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5566677777777777766543
No 314
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.69 E-value=3.9e+02 Score=25.77 Aligned_cols=29 Identities=10% Similarity=-0.077 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 039873 405 TWNAMICGYSHHGLGREALTLFQNMLAAE 433 (709)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 433 (709)
+..+-+....+++++..|..+-+++++.+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45555677778889999999989988854
No 315
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=29.37 E-value=2.5e+02 Score=26.24 Aligned_cols=20 Identities=0% Similarity=-0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 039873 173 RNALVELYTKCLDVEMAKRL 192 (709)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~ 192 (709)
..+.+...+..|+.++..++
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGS 34 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHHhhcCCCCCcccC
Confidence 34444555555555555443
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.22 E-value=1.7e+02 Score=26.02 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=40.9
Q ss_pred HHHHHHH---HcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC-----hhHHHHHHHHHHHhCCC
Q 039873 307 AMVAACF---QNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA-----LRHGDLLHAHIEKSGFK 369 (709)
Q Consensus 307 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~i~~~~~~~g~~ 369 (709)
-+|+++. +-.+.+.|+-.+.+|++.| .|..+.-..++.+.-..|. +..+...++.....|++
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 4589999999999999999 7776666666666655553 33444455555555543
No 317
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.54 E-value=46 Score=17.66 Aligned_cols=18 Identities=11% Similarity=0.628 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHHHHHhh
Q 039873 598 ESSQIYEKVRELSAKIKP 615 (709)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~ 615 (709)
.+++.|.+++++.+++++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 456778888777766654
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.62 E-value=3e+02 Score=24.38 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=29.5
Q ss_pred HHHHHHH---hCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 039873 206 SVLNGLI---ENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLK 250 (709)
Q Consensus 206 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 250 (709)
-+|+++. +..+++.|+-.+.+|++.| .|....--.++.+.-..|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3455554 4688999999999999998 665555455555554444
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.13 E-value=71 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=32.0
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 039873 82 NQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETL 119 (709)
Q Consensus 82 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 119 (709)
.+.+.|+++++.++.+...+|..++.++...|...-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 47899999999999999999999999998777765553
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.74 E-value=3.3e+02 Score=23.95 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHHhh
Q 039873 177 VELYTKCLDVEMAKRLLDL 195 (709)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~ 195 (709)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666655554
No 321
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.67 E-value=2.9e+02 Score=28.77 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHH-HHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873 475 EHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD------VVAWHT-LLNASRVHQNYGFGRRIAEYILHMDPN 538 (709)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd------~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 538 (709)
..+|.++..|...+.++.|.+++.+..+... ...|.- +.......+++.+|.+.+..++..-|.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4566666777777777777777665532211 112221 122345566677776666666655443
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.35 E-value=3.5e+02 Score=23.83 Aligned_cols=54 Identities=11% Similarity=-0.011 Sum_probs=24.5
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCC--------hhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873 344 LNSAAGLSALRHGDLLHAHIEKSGFKEH--------LIVGNALINMYAKGGNIEAANKVFSD 397 (709)
Q Consensus 344 l~~~~~~~~~~~a~~i~~~~~~~g~~~~--------~~~~~~li~~y~~~g~~~~A~~~f~~ 397 (709)
+...+..++.+.+.++.+.+.+.|..++ .....+-+..-++.|+.+-+..+++.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3334445555555555555555543221 01112233344455665555555543
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.58 E-value=92 Score=26.36 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhh
Q 039873 102 YSSLMTWYLHNGFLLETLKLFKNMV 126 (709)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~ 126 (709)
.+.+|.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445556666666666666666653
No 324
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.51 E-value=92 Score=25.75 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=6.0
Q ss_pred hcCChHHHHHHHHh
Q 039873 283 KCGKFSNAKKVFEG 296 (709)
Q Consensus 283 ~~g~~~~A~~~~~~ 296 (709)
+.|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34444444444433
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.46 E-value=5.8e+02 Score=26.08 Aligned_cols=130 Identities=15% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873 362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH 438 (709)
Q Consensus 362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 438 (709)
.+.+.|++--...|..-.+.+...|++++|.++-...+. ++..|.+.+-..=.+.|+..--+.+|.-+.+.| +.|.
T Consensus 351 lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~ 429 (494)
T 1bpo_A 351 MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK 429 (494)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccch
Confidence 345566666666666667788888999999888776653 344444444333334455555666666666665 4443
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 039873 439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP 501 (709)
Q Consensus 439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 501 (709)
.-=.-+...-...|+.+- ++...++..+..+.+.-..+ +..+..-|+.+|.+.+
T Consensus 430 ~ESlEl~r~vL~q~r~~l----lekWl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 430 YESLELCRPVLQQGRKQL----LEKWLKEDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHHHTTCHHH----HHHHHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHhhHHhHHHHhccHHHH----HHHHHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 222222222233333333 33333334555554332222 4445556666655544
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.39 E-value=3.1e+02 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873 490 LDEAEKFMRSTPVKWDVV--AW-----HTLLNASRVHQNYGFGRRIAEYILHMDPNDV 540 (709)
Q Consensus 490 ~~~A~~~~~~~~~~pd~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 540 (709)
++.|+.+++.+.-.-|.. .. -..+..|.+.|.+++|.+++++...-.+.+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 456666666665433311 11 1233468888888888888888777665443
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.20 E-value=2.1e+02 Score=25.39 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=9.7
Q ss_pred HHHHHccCChHHHHHHHhc
Q 039873 75 VNLYAKCNQISIARQLFDN 93 (709)
Q Consensus 75 l~~~~~~g~~~~A~~~f~~ 93 (709)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455555555555543
No 328
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=23.52 E-value=19 Score=25.44 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=17.9
Q ss_pred ceEEEecCCcccccccccccCC
Q 039873 685 RDIIVRDTNRFHRFQDGCCSCT 706 (709)
Q Consensus 685 ~~i~~~d~~~~h~f~~g~csc~ 706 (709)
..|=+.|....|+|+|||-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566789999999999997644
No 329
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.92 E-value=18 Score=19.33 Aligned_cols=13 Identities=38% Similarity=1.321 Sum_probs=9.0
Q ss_pred ccccccc--cCCCCC
Q 039873 697 RFQDGCC--SCTDYW 709 (709)
Q Consensus 697 ~f~~g~c--sc~~~~ 709 (709)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5778887 566655
No 330
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.23 E-value=4.8e+02 Score=23.92 Aligned_cols=244 Identities=9% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCC-CchHHHHHHHHHH-HhCC
Q 039873 89 QLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSG-RGAEGRQCHGYVF-KSGL 166 (709)
Q Consensus 89 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~-~~g~ 166 (709)
.++..+..+|...-...+.++.+.+..+..-.+...+. .++...-...+.++...+ ..+....+...+. ..--
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS-----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHc-----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q ss_pred CCchhHHHHHHHHHHhcC------ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHH
Q 039873 167 VFCKYVRNALVELYTKCL------DVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYV 240 (709)
Q Consensus 167 ~~~~~~~~~li~~y~~~g------~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 240 (709)
+++..+-...+.+.++.| ..+....+...+..++...-...+.++.+.|. .+++..+..+.. .++...-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHH
Q ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHh
Q 039873 241 NAFGLSASLK-DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFE 319 (709)
Q Consensus 241 ~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 319 (709)
..+.+....+ +...+...+..+.+ .++..+....+.++.+.|+.+....+...+..++ .-...+.++.+.|. .
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~ 251 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-K 251 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-G
T ss_pred HHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-h
Q ss_pred HHHHHHHHHHhCCCCCCccchHHHHHHHhc
Q 039873 320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAG 349 (709)
Q Consensus 320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 349 (709)
+++..+.++... .+|.......+.+..+
T Consensus 252 ~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 TLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 331
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.10 E-value=37 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=29.0
Q ss_pred CCcEEEEe----ccccccchhHHHHHHhhhcCceEEEecCCccccccccccc
Q 039873 657 TAPILVIK----NLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCS 704 (709)
Q Consensus 657 ~~~~~~~~----~l~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~~g~cs 704 (709)
...+||+. ..++|-+| .+...-..-.+.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45677774 57788777 444444455789999999999874
No 332
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=21.06 E-value=34 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.1
Q ss_pred cCcHHHHHHHHHHHHHHhhCCcccCCcccc
Q 039873 597 PESSQIYEKVRELSAKIKPLGYVPDVAAVL 626 (709)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~ 626 (709)
+...+|.+.+++...+++..||.||...+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 344567888888999999999999987653
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.79 E-value=2.2e+02 Score=23.53 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 039873 253 KLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK 286 (709)
Q Consensus 253 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 286 (709)
-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 38 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3344455444444333333333334444444443
No 334
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.39 E-value=5.5e+02 Score=24.29 Aligned_cols=280 Identities=9% Similarity=-0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCChHHHHHHHhhCCCCCccc--HHHHHHHHHh
Q 039873 139 SIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYV---RNALVELYTKCLDVEMAKRLLDLLPGYDVFE--YNSVLNGLIE 213 (709)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~ 213 (709)
++.|...++.|+++..+.+++. |..++... ..+-+..-++.|+.+-+.-+++.-..++... ....+.....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHH------------HHHHHH
Q 039873 214 NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINS------------AMISMY 281 (709)
Q Consensus 214 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~------------~li~~y 281 (709)
.+.......+...-...... |..-.+.+..++.... .++...+++.|..++..... +.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred cccchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Q ss_pred HhcCChHHHHHHHHh----ccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH--HHHHHHhccCChhH
Q 039873 282 GKCGKFSNAKKVFEG----LETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA--VMLNSAAGLSALRH 355 (709)
Q Consensus 282 ~~~g~~~~A~~~~~~----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~ 355 (709)
++.|+.+-+..++++ ....|....+.+...... +.......+.+.+.+.|..++..... +.|...+..|..+.
T Consensus 176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~ 254 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 254 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 039873 356 GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEER 435 (709)
Q Consensus 356 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (709)
...++.. ....+..-..-..+-+..-++.|+.+-+.-+++.-..+|..+ .+..-++.|+.+ +.+.+++.|-.
T Consensus 255 v~~Ll~~-~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~ 326 (337)
T 4g8k_A 255 VQRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAK 326 (337)
T ss_dssp HHHHHTS-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred HHHHHHh-cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCC
Q ss_pred CC
Q 039873 436 PN 437 (709)
Q Consensus 436 pd 437 (709)
||
T Consensus 327 ~d 328 (337)
T 4g8k_A 327 ED 328 (337)
T ss_dssp C-
T ss_pred CC
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.22 E-value=3.2e+02 Score=24.17 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=30.2
Q ss_pred HHHHHH---hCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 039873 207 VLNGLI---ENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLK 250 (709)
Q Consensus 207 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 250 (709)
+|+++. +..+++.|+-.+.+|++.|..|....--.++.+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 445544 46889999999999999988776655555555544333
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.12 E-value=2.2e+02 Score=25.86 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873 490 LDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILH--MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567 (709)
Q Consensus 490 ~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 567 (709)
++.+.+.|...+.=.|..-|--+---|.. ..+....+|..|.. ++-.-+..|...+..|...|++.+|.++++.-.
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q ss_pred hCCCcc
Q 039873 568 VRKVKK 573 (709)
Q Consensus 568 ~~~~~~ 573 (709)
+++.+|
T Consensus 178 ~~~A~P 183 (223)
T 4aez_C 178 RMKAKP 183 (223)
T ss_dssp HHTCBS
T ss_pred HcCCcc
No 337
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.12 E-value=2.7e+02 Score=22.68 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHhh
Q 039873 382 YAKGGNIEAANKVFSD 397 (709)
Q Consensus 382 y~~~g~~~~A~~~f~~ 397 (709)
.++.|+.+-+.-+++.
T Consensus 108 A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHhChHHHHHHHHhc
Confidence 3444555555544444
Done!