BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039874
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray
Crystallographic, Resonance Raman And Uv-Visible
Spectroscopic Analysis Of A Rieske- Type Demethylase
pdb|3VCP|A Chain A, The 2.2 Angstrom Structure Of Stc2 With Proline Bound In
The Active Site
Length = 412
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 160/390 (41%), Gaps = 76/390 (19%)
Query: 37 WYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHN 96
+YT P AL+L +FY+ W QL + + R+G E V+ R +G++ AFHN
Sbjct: 25 FYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHN 84
Query: 97 VCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVA 155
CRH S++ G+ + VCPYH WTY LDG L+ A + DF+ ++GL P+ +
Sbjct: 85 SCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMG--PDFDASKYGLKPVNLR 142
Query: 156 TWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGI-DSSLSYLCRREYTI--E 212
+ + + D+ + + L ++ + D+ +++ TI +
Sbjct: 143 NLDGLIYICLS---------DTPPDFQTFAQLARPYLEVHDLKDAKVAFTS----TIIEK 189
Query: 213 CNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYE--------KVSIQRCESGSTE 264
NWK+ +N + YH H L LD + + RCE+ T
Sbjct: 190 GNWKLVWENNRE-CYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTP 248
Query: 265 GT-----DDTHRLG------------------------------SKAIYAFIYPNFMINR 289
D +RL + + F YP+ N
Sbjct: 249 AQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPS-TWNH 307
Query: 290 YGPWMDTNL---VIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQM----EDII 342
+ P D +L V+P++PT +V + + KD ++ LK +V + ED
Sbjct: 308 FLP--DHSLTFRVMPISPTETEVTTTWLVH---KDAVEGVDYDLKRLTEVWIATNDEDRE 362
Query: 343 LCEGVQRGLESPAYCSGRYAPSVEQTMYHF 372
+ E Q+G+ SPAY G Y+P E + F
Sbjct: 363 IVETNQQGILSPAYVPGPYSPGQESGVMQF 392
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring
Hydroxylating Dioxygenase (Tm1040_3219) From
Silicibacter Sp. Tm1040 At 1 Resolution
Length = 409
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 147/375 (39%), Gaps = 45/375 (12%)
Query: 36 SWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFH 95
++YTD +L +FY+ W +L P + + ++G ++ R + I AFH
Sbjct: 22 AFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFH 81
Query: 96 NVCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEV 154
N CRH S++ G VCPYH WTY LDG LL A R G DF GL +
Sbjct: 82 NACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWA-RDXG-PDFEPSRHGLKTVHC 139
Query: 155 ATWGPFVLLNMGKEA--------VHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCR 206
+ + + EA V + ++ + ++N + S I+ + L +
Sbjct: 140 RELAGLIYICLADEAPDFERFAEVARPYLEVHDLSNAKVAHESSIVERG--NWKLVWENN 197
Query: 207 RE-YTIECNWKVFCDNYLDG-------GYHVP---YAH------KGLASGLQLDSYSTSL 249
RE Y N C + D G P AH G SG L
Sbjct: 198 RECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGXPSGFHLSGDGQFR 257
Query: 250 YEKVSIQR-CESGSTEGTDDTHRLGSKAIYA-------FIYPNFMINRYGPWMDTNLVIP 301
+ ++ ES + +G R +A +A F YP + V P
Sbjct: 258 VARXPLKEGAESYTXDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTP 317
Query: 302 LAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQM----EDIILCEGVQRGLESPAYC 357
++PT +V + + KD ++ L+ +V + ED + E Q G+ SPAY
Sbjct: 318 ISPTETEVTTKWLVH---KDAVEGVDYDLQRLTEVWIATNDEDREVVEFNQXGINSPAYE 374
Query: 358 SGRYAPSVEQTMYHF 372
G Y+P+ E + F
Sbjct: 375 PGPYSPTQESGVLQF 389
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTD LEL RVF RSW ++G+ Q++ P D+ + +GE VV R + I F N
Sbjct: 36 YTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQ 95
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT-RITGIKDFNVKEFGLVPLEVA 155
CRH I +G F C YHGW Y G L+ N KE+ + V
Sbjct: 96 CRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVE 155
Query: 156 TWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGID----SSLSYLCRREYTI 211
T+ + N + AV ++D+ + G ++ + +D + + +++ I
Sbjct: 156 TYKGLIFANWDENAV---DLDTYL-------GEAKFYMDHMLDRTEAGTEAIPGVQKWVI 205
Query: 212 ECNWKVFCDNYLDGGYHVPYAH--KGLASGLQLD 243
CNWK + + YH G+ +GL D
Sbjct: 206 PCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPED 239
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 4 SSCYSENLVAAQKLVYEFNPQ-----IPIEKALTPPSSWYTDPSFLALELHRVFYRSWQV 58
SS E A K V + P+ + EK L P Y D S LEL RVF RSW +
Sbjct: 2 SSAIKEVQGAPVKWVTNWTPEAIRGLVDQEKGLLDPRI-YADQSLYELELERVFGRSWLL 60
Query: 59 VGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVC 117
+G+ + + DF + +GE V+ R + I F N CRH I + +G F C
Sbjct: 61 LGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTC 120
Query: 118 PYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169
YHGW Y + G L+ + G F+ E+G + VAT+ V N +A
Sbjct: 121 SYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQA 180
Query: 170 VHQEEVDSNVVANEWLGGSSEILSI---NGIDSSLSYLCRREYTIECNWKVFCDNYLDGG 226
E +LG + + + +++ +++ I CNWK + +
Sbjct: 181 PDLE---------TYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDM 231
Query: 227 YHV 229
YH
Sbjct: 232 YHA 234
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 4 SSCYSENLVAAQKLVYEFNPQ-----IPIEKALTPPSSWYTDPSFLALELHRVFYRSWQV 58
SS E A K V + P+ + EK L P Y D S LEL RVF RSW +
Sbjct: 2 SSAIKEVQGAPVKWVTNWTPEAIRGLVDQEKGLLDPRI-YADQSLYELELERVFGRSWLL 60
Query: 59 VGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVC 117
+G+ + + DF + +GE V+ R + I F N CRH I + +G F C
Sbjct: 61 LGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTC 120
Query: 118 PYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169
YHGW Y + G L+ + G F+ E+G + VAT+ V N +A
Sbjct: 121 SYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQA 180
Query: 170 VHQEEVDSNVVANEWLGGSSEILSI---NGIDSSLSYLCRREYTIECNWKVFCDNYLDGG 226
E +LG + + + +++ +++ I CNWK + +
Sbjct: 181 PDLE---------TYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDM 231
Query: 227 YHV 229
YH
Sbjct: 232 YHA 234
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 4 SSCYSENLVAAQKLVYEFNPQ-----IPIEKALTPPSSWYTDPSFLALELHRVFYRSWQV 58
SS E A K V + P+ + EK L P Y D S LEL RVF RSW +
Sbjct: 2 SSAIKEVQGAPVKWVTNWTPEAIRGLVDQEKGLLDPRI-YADQSLYELELERVFGRSWLL 60
Query: 59 VGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVC 117
+G+ + + DF + +GE V+ R + I F N CRH I + +G F C
Sbjct: 61 LGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTC 120
Query: 118 PYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169
YHGW Y + G L+ + G F+ E+G + VAT+ V N +A
Sbjct: 121 SYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQA 180
Query: 170 VHQEEVDSNVVANEWLGGSSEILSI---NGIDSSLSYLCRREYTIECNWKVFCDNYLDGG 226
E +LG + + + +++ +++ I CNWK + +
Sbjct: 181 PDLE---------TYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDM 231
Query: 227 YHV 229
YH
Sbjct: 232 YHA 234
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 17/227 (7%)
Query: 32 TPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKI 91
T P++ DP +E R+F +W + + ++ + D+ I E +F+VCRD+ G+I
Sbjct: 22 TVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEI 81
Query: 92 HAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTL--LKATRITGIKDFNVKEFG 148
N CRH + G S F CPYHGWTY G+L + A + ++
Sbjct: 82 RGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWN 141
Query: 149 LVPL-EVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSI--NGIDSSLSYL- 204
L P+ +A++ + ++ A E ++LG L I + D+ L +
Sbjct: 142 LRPMPNLASYKGLIFGSLDPHADSLE---------DYLGDLKFYLDIVLDRSDAGLQVVG 192
Query: 205 CRREYTIECNWKVFCDNYLDGGYHVPYAHKGLAS-GLQLDSYSTSLY 250
+ + I+ NWK+ DN++ YH H+ + GL +LY
Sbjct: 193 APQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGLAPPDPQFALY 239
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
+ D ALE+ R+F R+W ++G+ + P DF + + E + ++ +G AF N
Sbjct: 20 FWDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINS 79
Query: 98 CRHHAS-ILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGI--KDFNVKEFGLVPLEV 154
C H + I SG FVC YHGW +G DG+L+ + + ++ + V
Sbjct: 80 CSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRV 139
Query: 155 ATWGPFVLLNMGKEAVHQEEVDSNV-----VANEWLGGSSEILSINGIDSSLSYLCRREY 209
T+ F+ EA E+ E GG E+L + L
Sbjct: 140 ETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGGGMELLG-----PPMKSL----- 189
Query: 210 TIECNWKVFCDNYLDGGYHVPYAHKGLAS 238
++CNWKV +N++ GYHV + H S
Sbjct: 190 -LQCNWKVPAENFIGDGYHVGWTHAAALS 217
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 128/329 (38%), Gaps = 56/329 (17%)
Query: 28 EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDD 87
E LT + D EL +F R+W + + + P D+ ++G E +V R +
Sbjct: 9 EAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQN 68
Query: 88 NGKIHAFHNVCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTL---------------- 130
+G + AF NVCRH L +G FVC YHGW YG +G L
Sbjct: 69 DGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKK 128
Query: 131 --LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGS 188
L + I+ F+ +G E P ++ +G A + E E +G
Sbjct: 129 KCLGLKEVPRIESFHGFIYGCFDAEA----PPLIDYLGDAAWYLEPTFKYSGGLELVGPP 184
Query: 189 SEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTS 248
+++ ++ NWK F +N++ GYHV + H A+ L+ S
Sbjct: 185 GKVV------------------VKANWKSFAENFVGDGYHVGWTH---AAALRA---GQS 220
Query: 249 LYEKVSIQRCESGSTEGTDDTHRLGS--KAIYAFIYPNFMIN------RYGPWMDTNLVI 300
++ ++ G T + GS + + NF + +G L
Sbjct: 221 VFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAK 280
Query: 301 PLAPTRCKVVFDYFLDGSLKDDKAFIEQS 329
+ R + ++ FL+G++ + +F+ S
Sbjct: 281 EIGDVRAR-IYRSFLNGTIFPNNSFLTGS 308
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTD + EL R+F RSW ++G+ Q+ DF + +GE +V R NG+I F N
Sbjct: 38 YTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQ 97
Query: 98 CRHHASIL--ATGSGKKSWFVCPYHGWTYGLDGTLLKAT-RITGIKDFNVKEFGLVPLEV 154
CRH + A G KS F C YHGW Y G L+ +++G + V
Sbjct: 98 CRHRGMRICRADGGNAKS-FTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARV 156
Query: 155 ATWGPFVLLNMGKEA------VHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRRE 208
T+ + N +A + + + + + + G+ I I ++
Sbjct: 157 ETYKGLIFANWDADAPDLDTYLGEAKFYMDHMLDRTEAGTEAIPGI------------QK 204
Query: 209 YTIECNWKVFCDNYLDGGYHV 229
+ I CNWK + + YH
Sbjct: 205 WVIPCNWKFAAEQFCSDMYHA 225
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|C Chain C, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|E Chain E, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
Length = 454
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
+ D LE+ R+F R+W ++G+ L P DF + + E + ++ +G AF N
Sbjct: 20 FWDRDVYDLEIERIFSRAWLMLGHKSLLPKPGDFITTYMAEDKIILSHQSDGTFRAFINS 79
Query: 98 CRHHAS-ILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGI--KDFNVKEFGLVPLEV 154
C H + I SG FVC YHGW YG DG+L+ + + +E + V
Sbjct: 80 CTHRGNQICHADSGNAKAFVCNYHGWVYGQDGSLVDVPLESRCYHNKLDKQELAAKSVRV 139
Query: 155 ATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSS---EILSINGIDSSLSYLCRREYTI 211
T+ F+ H E S ++LG + + G + +
Sbjct: 140 ETYKGFIF------GCHDPEAPS---LEDYLGEFRFYLDTIWEGGGAGLELLGPPMKSLL 190
Query: 212 ECNWKVFCDNYLDGGYHVPYAH 233
CNWKV +N++ GYHV + H
Sbjct: 191 HCNWKVPVENFVGDGYHVGWTH 212
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
Y D LEL RVF RSW ++G+ + D+ + +GE ++ R + I F N
Sbjct: 40 YADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQ 99
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFG 148
CRH I+ + G F C YHGW Y + G L+ + G F+ ++G
Sbjct: 100 CRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWG 159
Query: 149 LVPLEVATWGPFVLLNMGKEAVHQEEVDS------NVVANEWLGGSSEILSINGIDSSLS 202
+ V T+ V N EA + S +V+ + G+ I I
Sbjct: 160 PLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTEAIGGI-------- 211
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHV 229
+++ I CNWK + + YH
Sbjct: 212 ----QKWVIPCNWKFAAEQFCSDMYHA 234
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 21 FNPQIPI-EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEV 79
+N +I + E L+ + D EL +F R+W + + + P D+ + ++G
Sbjct: 3 YNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGID 62
Query: 80 EFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTL-------- 130
E +V R ++G I AF NVCRH ++++ +G FVC YHGW +G +G L
Sbjct: 63 EVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKD 122
Query: 131 ----------LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVV 180
L + ++ F+ +G E P ++ +G A + E + +
Sbjct: 123 LYGESLNKKCLGLKEVARVESFHGFIYGCFDQEA----PPLMDYLGDAAWYLEPMFKHSG 178
Query: 181 ANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
E +G +++ I+ NWK +N++ YHV + H
Sbjct: 179 GLELVGPPGKVV------------------IKANWKAPAENFVGDAYHVGWTH 213
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 21 FNPQIPI-EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEV 79
+N +I + E L+ + D EL +F R+W + + + P D+ + ++G
Sbjct: 3 YNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGID 62
Query: 80 EFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTL-------- 130
E +V R ++G I AF NVCRH ++++ +G FVC YHGW +G +G L
Sbjct: 63 EVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKD 122
Query: 131 ----------LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVV 180
L + ++ F+ +G E P ++ +G A + E + +
Sbjct: 123 LYGESLNKKCLGLKEVARVESFHGFIYGCFDQEA----PPLMDYLGDAAWYLEPMFKHSG 178
Query: 181 ANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
E +G +++ I+ NWK +N++ YHV + H
Sbjct: 179 GLELVGPPGKVV------------------IKANWKAPAENFVGDAYHVGWTH 213
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 22/214 (10%)
Query: 28 EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDD 87
EK L P ++D +EL RVF RSW ++G+ + D+ + +GE +V R
Sbjct: 32 EKGLLDPRI-FSDQDLYEIELERVFARSWLLLGHEGHIPKAGDYLTTYMGEDPVIVVRQK 90
Query: 88 NGKIHAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT--------RITG 138
+ I F N CRH I + G F C YHGW Y G L+ + G
Sbjct: 91 DRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVPYEKEAFCDKKEG 150
Query: 139 IKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEV--DSNVVANEWLGGSSEILS-IN 195
F+ ++G + V T+ + N EA + D+ + L + + I
Sbjct: 151 DCGFDKADWGPLQARVDTYKGLIFANWDTEAPDLKTYLSDATPYMDVMLDRTEAVTQVIT 210
Query: 196 GIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHV 229
G+ ++ I CNWK + + YH
Sbjct: 211 GMQKTV---------IPCNWKFAAEQFCSDMYHA 235
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase
(Ksha) From M. Tuberculosis
Length = 386
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 52 FYRSWQVVGYTDQLKDPQDFFSGRIGEVE-----FVVCRDDNGKIHAFHNVCRHHASILA 106
+ R W +G +D+ G+ VE VV D +G + CRH L+
Sbjct: 22 YARGWHCLGVA------KDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLS 75
Query: 107 TGSGKKSWFVCPYHGWTYGLDG 128
G+ K CP+H W +G DG
Sbjct: 76 EGTVKGDEVACPFHDWRWGGDG 97
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|B Chain B, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|C Chain C, Crystal Structure Of Dicamba Monooxygenase
pdb|3GB4|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GOB|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GTE|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTS|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GL0|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL2|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
Length = 349
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 34/196 (17%)
Query: 55 SWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSW 114
+W V ++L + I + + R +G + A ++C H + L+ G
Sbjct: 8 AWYVAALPEELSEKP--LGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGH 65
Query: 115 FVCPYHGWTYGLDGTLLKATRITGIK--DFNVKEFGLVPLEVATW---GPFVLLNMGKEA 169
CPYHG + G + G + NV+ F +V + W G L + G
Sbjct: 66 LQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIP 125
Query: 170 VHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHV 229
VD A +GG ++CN+K+ DN +D G H
Sbjct: 126 DFGCRVDP---AYRTVGGYGH--------------------VDCNYKLLVDNLMDLG-HA 161
Query: 230 PYAHKGLASGLQLDSY 245
Y H+ A Q D++
Sbjct: 162 QYVHRANA---QTDAF 174
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|G Chain G, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|H Chain H, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|I Chain I, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|J Chain J, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|K Chain K, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|L Chain L, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|M Chain M, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|N Chain N, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|O Chain O, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 394
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 23/200 (11%)
Query: 46 LELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASIL 105
LE F W + +L + + +GE V+ G++ A + C H
Sbjct: 25 LEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEK--VLLTRAKGEVKAIADGCAHRGVPF 82
Query: 106 ATGS--GKKSWFVCPYHGWTYGL-DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVL 162
+ K C YHGWTY L DG L+ G + P++VA FV
Sbjct: 83 SKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVF 142
Query: 163 LNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNY 222
+ G E H SE L +D L R T++ NW++ +N
Sbjct: 143 I--GDEEPH---------------ALSEDLPPGFLDEDTHLLGIRR-TVQSNWRLGVENG 184
Query: 223 LDGGYHVPYAHKGLASGLQL 242
D + + + SG +L
Sbjct: 185 FDTTHIFMHRNSPWVSGNRL 204
>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
Length = 389
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 26/173 (15%)
Query: 80 EFVVCRDDNGKIHAFHNVCRHHASILATGSG--KKSWFVCPYHGWTYGLD-GTLLKATRI 136
E V+ +G +HA + C H L+ K+ C YHGWTY D G L+ +
Sbjct: 54 EKVLLNRVDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDI--L 111
Query: 137 TGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSING 196
T + L V V L +G + H +E +
Sbjct: 112 TNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEPHD---------------LAEDVPPGF 156
Query: 197 IDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSL 249
+D+ L+ + + ++ NW++ +N D G HV + HK S + LD +L
Sbjct: 157 LDADLA-VHGQHRVVDANWRMGVENGFDAG-HV-FIHK---SSILLDGNDIAL 203
>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of
Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase
System Catalyzing The Novel Angular Dioxygenation For
Carbazole And Dioxin
pdb|2DE5|A Chain A, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|B Chain B, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|C Chain C, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|A Chain A, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|B Chain B, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|C Chain C, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|A Chain A, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|B Chain B, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|C Chain C, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|A Chain A, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|B Chain B, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|C Chain C, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|A Chain A, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|B Chain B, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|C Chain C, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|A Chain A, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|B Chain B, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|C Chain C, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 392
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 25/186 (13%)
Query: 52 FYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS-- 109
F W V ++ ++ + + +GE +V R D GK++ + C H L+
Sbjct: 25 FRNHWYPVMFSKEINEGEPKTLKLLGE-NLLVNRID-GKLYCLKDRCLHRGVQLSVKVEC 82
Query: 110 GKKSWFVCPYHGWTYGL-DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKE 168
KS C YH WTY DG L ++ P++ A F+ L G
Sbjct: 83 KTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDP 142
Query: 169 AVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYH 228
+ N +L EIL N I I+ NW++ +N D H
Sbjct: 143 PPLARDTPPN-----FLDDDMEILGKNQI-------------IKSNWRLAVENGFDPS-H 183
Query: 229 VPYAHK 234
+ Y HK
Sbjct: 184 I-YIHK 188
>pdb|1JM1|A Chain A, Crystal Structure Of The Soluble Domain Of The Rieske
Protein Ii (Soxf) From Sulfolobus Acidocaldarius
Length = 204
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 72 FSGRIGEVEFVVCRDDNGKIHAFHNVCRH-----HASILATGSGKKSWFV------CPYH 120
++G +G+++ + NG I AF +VC H A ++ + + CP H
Sbjct: 68 YAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCH 127
Query: 121 GWTYGL-DGTLL 131
G Y L DG ++
Sbjct: 128 GSIYALKDGGVV 139
>pdb|2F4Q|A Chain A, Crystal Structure Of Deinococcus Radiodurans Topoisomerase
Ib
Length = 346
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 307 CKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEG-VQRGLES 353
C V+FD +LDG + DD + + ++ ++E + EG ++R LES
Sbjct: 291 CPVIFDRYLDGKVLDDY----EPRTERQEAELEGLTRSEGALKRXLES 334
>pdb|3M4A|A Chain A, Crystal Structure Of A Bacterial Topoisomerase Ib In
Complex With Dna Reveals A Secondary Dna Binding Site
Length = 346
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 307 CKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEG-VQRGLES 353
C V+FD +LDG + DD + + ++ ++E + EG ++R LES
Sbjct: 291 CPVIFDRYLDGKVLDDY----EPRTERQEAELEGLTRSEGALKRMLES 334
>pdb|1Z01|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
Length = 446
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 82 VVCRDDNGKIHAFHNVCRHHASILATGSG--KKSWFVCPYHGWTYGLD-GTLL------- 131
+V R NGK+ A + C H L+ KS C YHG+T+ L+ G L+
Sbjct: 68 IVLRRVNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPE 127
Query: 132 -KATRITGIKDFNVKE 146
K TG+ + V E
Sbjct: 128 DKLIGTTGVTTYPVHE 143
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 3 SSSCYSENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYT 62
SS S +++A K+ + + IP K + W P F+ + + V
Sbjct: 60 SSMSASADVLAMSKIEIKLS-DIPEGKNMA--FKWRGKPLFVRHRTKKEIDQEAAV--EV 114
Query: 63 DQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGW 122
QL+DPQ R+ + E+V+ VC H + +G + CP HG
Sbjct: 115 SQLRDPQHDLE-RVKKPEWVI----------LIGVCTHLGCVPIANAGDFGGYYCPCHGS 163
Query: 123 TYGLDGTLLKA 133
Y G + K
Sbjct: 164 HYDASGRIRKG 174
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
pdb|1BGY|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|Q Chain Q, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|E Chain E, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|E Chain E, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|E Chain E, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|E Chain E, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|EE Chain e, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 196
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 3 SSSCYSENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYT 62
SS S +++A K+ + + IP K + W P F+ + + V
Sbjct: 60 SSMSASADVLAMSKIEIKLS-DIPEGKNMA--FKWRGKPLFVRHRTKKEIDQEAAV--EV 114
Query: 63 DQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGW 122
QL+DPQ R+ + E+V+ VC H + +G + CP HG
Sbjct: 115 SQLRDPQHDLE-RVKKPEWVI----------LIGVCTHLGCVPIANAGDFGGYYCPCHGS 163
Query: 123 TYGLDGTLLKA 133
Y G + K
Sbjct: 164 HYDASGRIRKG 174
>pdb|1VM9|A Chain A, The X-Ray Structure Of The Cys84ala Cys85ala Double Mutant
Of The [2fe-2s] Ferredoxin Subunit Of Toluene-4-
Monooxygenase From Pseudomonas Mendocina Kr1
pdb|2Q3W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
The Cys84ala Cys85ala Double Mutant Of The [2fe-2s]
Ferredoxin Subunit Of Toluene- 4-Monooxygenase From
Pseudomonas Mendocina Kr1
Length = 111
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 79 VEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGT 129
E ++ + + A+ +C H +L+ GS + C H WT+ DGT
Sbjct: 25 TEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFN-DGT 74
>pdb|1SJG|A Chain A, Solution Structure Of T4moc, The Rieske Ferredoxin
Component Of The Toluene 4-Monooxygenase Complex
Length = 112
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 79 VEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGT 129
E ++ + + A+ +C H +L+ GS + C H WT+ DGT
Sbjct: 26 TEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFN-DGT 75
>pdb|2I7F|A Chain A, Sphingomonas Yanoikuyae B1 Ferredoxin
pdb|2I7F|B Chain B, Sphingomonas Yanoikuyae B1 Ferredoxin
Length = 108
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 88 NGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKA 133
+G++ N+C H ++L G + CP+HG ++ + KA
Sbjct: 35 DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKA 80
>pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
Length = 298
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 223 LDGGYHVPYAHKG----LASGLQLDSYSTSLYEKVSIQRCESGSTEGTDDTHRLGSKAIY 278
L G ++V H+ ++ G+ DSY EK + +G+ D S+ +
Sbjct: 175 LTGDFNVDQTHQSYDAFVSKGVLCDSY-----EKCDYRYALNGTFNNFDPNSFTESRIDH 229
Query: 279 AFIYPNFMINRYGPWMDT 296
F+ P+F + RYG DT
Sbjct: 230 IFVSPSFHVKRYGVLTDT 247
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske Iron-
Sulfur Protein Of The Bovine Heart Mitochondrial
Cytochrome Bc1-complex
Length = 129
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 36 SWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFH 95
W P F+ + + V QL+DPQ R+ + E+V+
Sbjct: 23 KWRGKPLFVRHRTKKEIDQEAAV--EVSQLRDPQHDLE-RVKKPEWVI----------LI 69
Query: 96 NVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKA 133
VC H + +G + CP HG Y G + K
Sbjct: 70 GVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKG 107
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 64 QLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWT 123
+L+DPQ R+ + E+V+ VC H + SG + CP HG
Sbjct: 116 KLRDPQHDLD-RVKKPEWVI----------LVGVCTHLGCVPIANSGDFGGYYCPCHGSH 164
Query: 124 YGLDGTLLK 132
Y G + K
Sbjct: 165 YDASGRIRK 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,650,322
Number of Sequences: 62578
Number of extensions: 559539
Number of successful extensions: 1266
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 47
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)