BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039874
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana
GN=At4g29890 PE=2 SV=2
Length = 422
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 251/366 (68%), Positives = 307/366 (83%), Gaps = 2/366 (0%)
Query: 16 KLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGR 75
KLV EF+P+IP+E+A TPPSSWYTDP F + EL RVFY WQ VGY+DQ+K+ +DFF+GR
Sbjct: 56 KLVTEFDPKIPLERASTPPSSWYTDPQFYSFELDRVFYGGWQAVGYSDQIKESRDFFTGR 115
Query: 76 IGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATR 135
+G+V+FVVCRD+NGKIHAFHNVC HHASILA+G+G+KS FVC YHGWTY L G+L+KATR
Sbjct: 116 LGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGRKSCFVCLYHGWTYSLSGSLVKATR 175
Query: 136 ITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSN-VVANEWLGGSSEILSI 194
++GI++F++ E GL PL VA WGPFVLL + + EV+++ +VA+EWLG S LS
Sbjct: 176 MSGIQNFSLSEMGLKPLRVAVWGPFVLLKVTAATSRKGEVETDELVASEWLGTSVGRLSQ 235
Query: 195 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVS 254
G+DS LSY+CRREYTI+CNWKVFCDNYLDGGYHVPYAHKGL SGL L++YST+++EKVS
Sbjct: 236 GGVDSPLSYICRREYTIDCNWKVFCDNYLDGGYHVPYAHKGLMSGLDLETYSTTIFEKVS 295
Query: 255 IQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYF 314
IQ C GS G D RLGS+A+YAF+YPNFMINRYGPWMDTNLV+PL P +CKVVFDYF
Sbjct: 296 IQECGGGSKVGEDGFDRLGSEALYAFVYPNFMINRYGPWMDTNLVLPLGPRKCKVVFDYF 355
Query: 315 LDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHS 374
LD SLKDD+AFI++SL++S++VQMED++LCE VQRGLES AY GRYA VE+ M+HFH
Sbjct: 356 LDPSLKDDEAFIKRSLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHC 414
Query: 375 LLHCNL 380
LLH NL
Sbjct: 415 LLHHNL 420
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO
PE=2 SV=1
Length = 442
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/381 (52%), Positives = 267/381 (70%), Gaps = 10/381 (2%)
Query: 4 SSCYSENLVAA----QKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVV 59
SS S N+ +++++EF+P++P E TPPS+WYTDPS + EL R+F + WQV
Sbjct: 67 SSINSNNITTTTPNIKRIIHEFDPKVPAEDGFTPPSTWYTDPSLYSHELDRIFSKGWQVA 126
Query: 60 GYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPY 119
GY+DQ+K+P +F+G +G VE++VCRD GK+HAFHNVC H ASILA G+GKKS FVCPY
Sbjct: 127 GYSDQIKEPNQYFTGSLGNVEYLVCRDGQGKVHAFHNVCTHRASILACGTGKKSCFVCPY 186
Query: 120 HGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNV 179
HGW +GLDG+L+KAT+ T + F+ KE GLV L+VA WGPFVL+++ + E
Sbjct: 187 HGWVFGLDGSLMKATK-TENQVFDPKELGLVTLKVAIWGPFVLISLDRSGSEGTE----D 241
Query: 180 VANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASG 239
V EW+G +E + + D SL ++ R E+ +E NWKVFCDNYLD YHVPYAHK A+
Sbjct: 242 VGKEWIGSCAEEVKKHAFDPSLQFINRSEFPMESNWKVFCDNYLDSAYHVPYAHKYYAAE 301
Query: 240 LQLDSYSTSLYEKVSIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLV 299
L D+Y T L EKV IQR S S + + RLGS+A YAFIYPNF + RYGPWM T +
Sbjct: 302 LDFDTYKTDLLEKVVIQRVASSSNK-PNGFDRLGSEAFYAFIYPNFAVERYGPWMTTMHI 360
Query: 300 IPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSG 359
PL P +CK+V DY+L+ ++ +DK +IE+S+ ++ VQ ED++LCE VQRGLE+PAY SG
Sbjct: 361 GPLGPRKCKLVVDYYLENAMMNDKPYIEKSIMINDNVQKEDVVLCESVQRGLETPAYRSG 420
Query: 360 RYAPSVEQTMYHFHSLLHCNL 380
RY +E+ ++HFH LH L
Sbjct: 421 RYVMPIEKGIHHFHCWLHQTL 441
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO
PE=1 SV=1
Length = 439
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/366 (53%), Positives = 260/366 (71%), Gaps = 6/366 (1%)
Query: 15 QKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSG 74
Q LV+EF+PQIP E A TPPSSWYT+P+F + EL R+FY+ WQV G +DQ+K+P +F+G
Sbjct: 79 QSLVHEFDPQIPPEDAHTPPSSWYTEPAFYSHELERIFYKGWQVAGISDQIKEPNQYFTG 138
Query: 75 RIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKAT 134
+G VE++V RD GK+HAFHNVC H ASILA GSGKKS FVCPYHGW YG+DG+L KA+
Sbjct: 139 SLGNVEYLVSRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMDGSLAKAS 198
Query: 135 RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSI 194
+ ++ + KE GLVPL+VA WGPFVL+++ + +E D V EWLG S+E +
Sbjct: 199 KAKPEQNLDPKELGLVPLKVAVWGPFVLISLDRSL--EEGGD---VGTEWLGTSAEDVKA 253
Query: 195 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVS 254
+ D SL ++ R E+ +E NWK+F DNYLD YHVPYAHK A+ L D+Y T + E V+
Sbjct: 254 HAFDPSLQFIHRSEFPMESNWKIFSDNYLDSSYHVPYAHKYYATELNFDTYDTQMIENVT 313
Query: 255 IQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYF 314
IQR E GS+ D R+G +A YAF YPNF + RYGPWM T + PL P +CK+V DY+
Sbjct: 314 IQRVE-GSSNKPDGFDRVGIQAFYAFAYPNFAVERYGPWMTTMHIHPLGPRKCKLVVDYY 372
Query: 315 LDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHS 374
++ S+ DDK +IE+ + ++ VQ ED++LCE VQRGLE+PAY SGRY +E+ ++HFH
Sbjct: 373 IENSMLDDKDYIEKGIAINDNVQREDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHC 432
Query: 375 LLHCNL 380
L L
Sbjct: 433 WLQQTL 438
>sp|O22553|CHMO_BETVU Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2
SV=1
Length = 446
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 193/367 (52%), Positives = 264/367 (71%), Gaps = 8/367 (2%)
Query: 15 QKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSG 74
+ LV+EF+P+IP E ALTPPS+WYT+P+F + EL R+FY+ WQV GY++Q+K+ +F+G
Sbjct: 86 RSLVHEFDPEIPPEDALTPPSTWYTEPAFYSHELERIFYKGWQVAGYSEQVKEKNQYFTG 145
Query: 75 RIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKAT 134
+G VE++V RD G++HAFHNVC H ASILA GSGKKS FVCPYHGW YGLDG+L KA+
Sbjct: 146 SLGNVEYLVSRDGQGELHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLAKAS 205
Query: 135 RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNV-VANEWLGGSSEILS 193
+ T ++ + KE GL PL+VA WGPF+L+++ + +D+N V EW+G S+E +
Sbjct: 206 KATETQNLDPKELGLAPLKVAEWGPFILISLDR------SLDANADVGTEWIGKSAEDVK 259
Query: 194 INGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKV 253
+ D +L + R E+ +ECNWKVFCDNYLD YHVPYAHK A+ L D+Y+T + EK
Sbjct: 260 AHAFDPNLKFTHRSEFPMECNWKVFCDNYLDSSYHVPYAHKYYAAELDFDTYNTEMIEKC 319
Query: 254 SIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDY 313
IQR S S + D RLG++A YAFIYPNF + RYG WM T V+P+ +CK+V DY
Sbjct: 320 VIQRVGSSSNK-PDGFDRLGTEAFYAFIYPNFAVERYGTWMTTMHVVPMGQRKCKLVVDY 378
Query: 314 FLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFH 373
+L+ ++ DDKA+I++ + ++ VQ ED +LCE VQRGLE+PAY SGRY +E+ ++HFH
Sbjct: 379 YLEKAMLDDKAYIDKGIAINDNVQKEDKVLCESVQRGLETPAYRSGRYVMPIEKGIHHFH 438
Query: 374 SLLHCNL 380
LH L
Sbjct: 439 CWLHETL 445
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/363 (52%), Positives = 256/363 (70%), Gaps = 8/363 (2%)
Query: 15 QKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSG 74
Q LV +F+P +P E ALTPPSSWYT+P+F A EL R+FY+ WQV GY+DQ+K+ +F+G
Sbjct: 80 QSLVKDFDPLVPAEDALTPPSSWYTEPAFYAHELDRIFYKGWQVAGYSDQVKEANQYFTG 139
Query: 75 RIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKAT 134
+G VE++VCRD GK+HAFHNVC H ASILA GSGKKS FVCPYHGW YG++G+L KA+
Sbjct: 140 TLGNVEYLVCRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMNGSLTKAS 199
Query: 135 RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSI 194
+ T + N E GLVPL+VA WGPF+L+++ + + +V S EWLG +E +
Sbjct: 200 KATPEQSLNPDELGLVPLKVAVWGPFILISLDRSSREVGDVGS-----EWLGSCAEDVKA 254
Query: 195 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVS 254
+ D +L ++ R E+ IE NWK+F DNYLD YHVPYAHK A+ L D+Y T + V+
Sbjct: 255 HAFDPNLQFINRSEFPIESNWKIFSDNYLDSSYHVPYAHKYYATELDFDTYQTDMVGNVT 314
Query: 255 IQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYF 314
IQR S G + RLG++A YAF YPNF + RYGPWM T ++PL P +CK+V DY+
Sbjct: 315 IQRVAGTSNNGFN---RLGTQAFYAFAYPNFAVERYGPWMTTMHIVPLGPRKCKLVVDYY 371
Query: 315 LDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHS 374
++ S DDK +IE+ + ++ VQ ED++LCE VQ+GLE+PAY SGRY +E+ ++HFH
Sbjct: 372 IEKSKLDDKDYIEKGIAINDNVQKEDVVLCESVQKGLETPAYRSGRYVMPIEKGIHHFHC 431
Query: 375 LLH 377
LH
Sbjct: 432 WLH 434
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 164/368 (44%), Gaps = 29/368 (7%)
Query: 22 NPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEF 81
NPQ +A T P+ +YTD + E VF +SW V ++ +L + D+ + I
Sbjct: 17 NPQ----EAWTIPARFYTDQNAFEHEKENVFAKSWICVAHSSELANANDYVTREIIGESI 72
Query: 82 VVCRDDNGKIHAFHNVCRHHASILATGSGK-KSWFVCPYHGWTYGLDGTLLKATRITGIK 140
V+ R + + AF+NVC H L +G GK K+ CPYH W + LDG L A +
Sbjct: 73 VLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHARNCENVA 132
Query: 141 DFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSS 200
+F+ + LVP+ + + FV +NM A V ++ G +++L
Sbjct: 133 NFDSDKAQLVPVRLEEYAGFVFINMDPNATS--------VEDQLPGLGAKVLEACPEVHD 184
Query: 201 LSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCES 260
L R NWK DNYL+ YH AH G + +Q+D Y +++ ++Q +
Sbjct: 185 LKLAARFTTRTPANWKNIVDNYLE-CYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQYGFA 243
Query: 261 GSTEGTDDTHRLGSKAIYAF-IYPNFMINRYGPWMDTNLVIPLAPTRCKVVFD----YFL 315
+E + A + F ++P M+N P VI P + YF
Sbjct: 244 KPSEQSFKFEEGTDAAFHGFWLWPCTMLN-VTPIKGMMTVIYEFPVDSETTLQNYDIYFT 302
Query: 316 DGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAY-CSGRYAPS------VEQT 368
+ L D++ + + +D + ED+ L E VQ+GL+S Y GR E
Sbjct: 303 NEELTDEQKSLIEWYRDV--FRPEDLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHG 360
Query: 369 MYHFHSLL 376
+ HFH+LL
Sbjct: 361 IAHFHNLL 368
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 164/368 (44%), Gaps = 29/368 (7%)
Query: 22 NPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEF 81
NPQ +A T P+ +YTD + E VF +SW V ++ +L + D+ + I
Sbjct: 17 NPQ----EAWTIPARFYTDQNAFEHEKENVFAKSWICVAHSSELANANDYVTREIIGESI 72
Query: 82 VVCRDDNGKIHAFHNVCRHHASILATGSGK-KSWFVCPYHGWTYGLDGTLLKATRITGIK 140
V+ R + + AF+NVC H L +G GK K+ CPYH W + LDG L A +
Sbjct: 73 VLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHARNCENVA 132
Query: 141 DFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSS 200
+F+ + LVP+ + + FV +NM A V ++ G +++L
Sbjct: 133 NFDSDKAQLVPVRLEEYAGFVFINMDPNATS--------VEDQLPGLGAKVLEACPEVHD 184
Query: 201 LSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCES 260
L R NWK DNYL+ YH AH G + +Q+D Y +++ ++Q +
Sbjct: 185 LKLAARFTTRTPANWKNIVDNYLE-CYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQYGFA 243
Query: 261 GSTEGTDDTHRLGSKAIYAF-IYPNFMINRYGPWMDTNLVIPLAPTRCKVVFD----YFL 315
+E + A + F ++P M+N P VI P + YF
Sbjct: 244 KPSEQSFKFEEGTDAAFHGFWLWPCTMLN-VTPIKGMMTVIYEFPVDSETTLQNYDIYFT 302
Query: 316 DGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAY-CSGRYAPS------VEQT 368
+ L D++ + + +D + ED+ L E VQ+GL+S Y GR E
Sbjct: 303 NEELTDEQKSLIEWYRDV--FRPEDLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHG 360
Query: 369 MYHFHSLL 376
+ HFH+LL
Sbjct: 361 IAHFHNLL 368
>sp|Q7N4W0|HCAE_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=hcaE PE=3 SV=1
Length = 453
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 107/253 (42%), Gaps = 53/253 (20%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
Y DP LEL R+F R W + + Q+ +P DFF+ +GE VV R NG + AF N
Sbjct: 25 YIDPELYQLELERIFGRCWLFLAHQSQIPNPGDFFNTYMGEDSVVVVRQKNGSVKAFLNQ 84
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVAT 156
CRH + + SG F CPYHGW+YG+DG L+ VPLE
Sbjct: 85 CRHRSMRVCYADSGNTRAFTCPYHGWSYGVDGRLID-----------------VPLEACA 127
Query: 157 WGPFVLL--NMGKEAVHQEEVDSNVVANEWLGGSSEILSING-----IDSSLSYLCRRE- 208
+ P L G + V E ++ W + ++ G +D L RRE
Sbjct: 128 Y-PHGLCKEQWGLQEVPCVENYKGLIFGNWDTTAPSLIDYLGDMAWYLDGVLD---RREG 183
Query: 209 ----------YTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRC 258
+ I CNWK+ + + YH ++H AS +Q+ +S++
Sbjct: 184 GTEVIGGVQKWLINCNWKLPAEQFAGDQYHALFSH---ASAVQV----------LSVKDG 230
Query: 259 ESGSTEGTDDTHR 271
+ G D T R
Sbjct: 231 DDKKALGADQTSR 243
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp.
(strain ADP1) GN=antA PE=1 SV=1
Length = 471
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
+T+P LE+ +F + W + ++ + DF + +IG +V RD G++HA N
Sbjct: 33 FTEPELFELEMELIFEKVWIYACHESEIPNNNDFVTVQIGRQPMIVSRDGKGELHAMVNA 92
Query: 98 CRHH-ASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITG--IKDFNVKEFGLVPLEV 154
C H A++ G +S F CP+H W Y DG L+K + G +DF+ GL +
Sbjct: 93 CEHRGATLTRVAKGNQSVFTCPFHAWCYKSDGRLVKV-KAPGEYCEDFDKSSRGLKQGRI 151
Query: 155 ATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYL----CRREYT 210
A++ FV +++ +A E ++LG + L + S L + YT
Sbjct: 152 ASYRGFVFVSLDTQATDSLE--------DFLGDAKVFLDLMVDQSPTGELEVLQGKSAYT 203
Query: 211 IECNWKVFCDNYLDGGYHVPYAHKGLASGLQ 241
NWK+ +N LD GYHV H S +Q
Sbjct: 204 FAGNWKLQNENGLD-GYHVSTVHYNYVSTVQ 233
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLLKA------------TRITGIKDFNV 144
CRH A ++ G F CPYHGW+YG++G L+ G+ +
Sbjct: 85 CRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPC 144
Query: 145 KEF--GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202
E GL+ T P + +G A + +D + E G +EI + G+
Sbjct: 145 VESYKGLIFGNWDTSAPGLRDYLGDIAWY---LDGMLDRRE---GGTEI--VGGV----- 191
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL 242
+++ I CNWK + + YH ++H AS +Q+
Sbjct: 192 ----QKWVINCNWKFPAEQFASDQYHALFSH---ASAVQV 224
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLLKA------------TRITGIKDFNV 144
CRH A ++ G F CPYHGW+YG++G L+ G+ +
Sbjct: 85 CRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPC 144
Query: 145 KEF--GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202
E GL+ T P + +G A + +D + E G +EI + G+
Sbjct: 145 VESYKGLIFGNWDTSAPGLRDYLGDIAWY---LDGMLDRRE---GGTEI--VGGV----- 191
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL 242
+++ I CNWK + + YH ++H AS +Q+
Sbjct: 192 ----QKWVINCNWKFPAEQFASDQYHALFSH---ASAVQV 224
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLLKA------------TRITGIKDFNV 144
CRH A ++ G F CPYHGW+YG++G L+ G+ +
Sbjct: 85 CRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPC 144
Query: 145 KEF--GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202
E GL+ T P + +G A + +D + E G +EI + G+
Sbjct: 145 VESYKGLIFGNWDTSAPGLRDYLGDIAWY---LDGMLDRRE---GGTEI--VGGV----- 191
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL 242
+++ I CNWK + + YH ++H AS +Q+
Sbjct: 192 ----QKWVINCNWKFPAEQFASDQYHALFSH---ASAVQV 224
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLLKA------------TRITGIKDFNV 144
CRH A ++ G F CPYHGW+YG++G L+ G+ +
Sbjct: 85 CRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPC 144
Query: 145 KEF--GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202
E GL+ T P + +G A + +D + E G +EI + G+
Sbjct: 145 VESYKGLIFGNWDTSAPGLRDYLGDIAWY---LDGMLDRRE---GGTEI--VGGV----- 191
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL 242
+++ I CNWK + + YH ++H AS +Q+
Sbjct: 192 ----QKWVINCNWKFPAEQFASDQYHALFSH---ASAVQV 224
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLLKA------------TRITGIKDFNV 144
CRH A ++ G F CPYHGW+YG++G L+ G+ +
Sbjct: 85 CRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPC 144
Query: 145 KEF--GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202
E GL+ T P + +G A + +D + E G +EI + G+
Sbjct: 145 VESYKGLIFGNWDTSAPGLRDYLGDIAWY---LDGMLDRRE---GGTEI--VGGV----- 191
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL 242
+++ I CNWK + + YH ++H AS +Q+
Sbjct: 192 ----QKWVINCNWKSPAEQFASDQYHALFSH---ASAVQV 224
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLLKA------------TRITGIKDFNV 144
CRH A ++ G F CPYHGW+YG++G L+ G+ +
Sbjct: 85 CRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPC 144
Query: 145 KEF--GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202
E GL+ T P + +G A + +D + E G +EI + G+
Sbjct: 145 VESYKGLIFGNWDTSAPGLHDYLGDIAWY---LDGMLDRRE---GGTEI--VGGV----- 191
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL 242
+++ I CNWK + + YH ++H AS +Q+
Sbjct: 192 ----QKWVINCNWKFPAEQFASDQYHALFSH---ASAVQV 224
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTDP LEL R+F R W + + Q+ P DFF+ +GE VV R +G I AF N
Sbjct: 25 YTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQ 84
Query: 98 CRHHASILATGS-GKKSWFVCPYHGWTYGLDGTLL 131
CRH A ++ G F CPYHGW+YG++G L+
Sbjct: 85 CRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELI 119
>sp|P0C618|BNZA_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=bnzA
PE=3 SV=1
Length = 450
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTD LEL RVF RSW ++G+ Q++ P D+ + +GE VV R + I F N
Sbjct: 36 YTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQ 95
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT-RITGIKDFNVKEFGLVPLEVA 155
CRH I +G F C YHGW Y G L+ N KE+ + V
Sbjct: 96 CRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVE 155
Query: 156 TWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGID----SSLSYLCRREYTI 211
T+ + N + AV ++D+ + G ++ + +D + + +++ I
Sbjct: 156 TYKGLIFANWDENAV---DLDTYL-------GEAKFYMDHMLDRTEAGTEAIPGVQKWVI 205
Query: 212 ECNWKVFCDNYLDGGYHVPYAH--KGLASGLQLD 243
CNWK + + YH G+ +GL D
Sbjct: 206 PCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPED 239
>sp|A5W4F2|BNZA_PSEP1 Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain
F1 / ATCC 700007) GN=bnzA PE=1 SV=1
Length = 450
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTD LEL RVF RSW ++G+ Q++ P D+ + +GE VV R + I F N
Sbjct: 36 YTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQ 95
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT-RITGIKDFNVKEFGLVPLEVA 155
CRH I +G F C YHGW Y G L+ N KE+ + V
Sbjct: 96 CRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVE 155
Query: 156 TWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGID----SSLSYLCRREYTI 211
T+ + N + AV ++D+ + G ++ + +D + + +++ I
Sbjct: 156 TYKGLIFANWDENAV---DLDTYL-------GEAKFYMDHMLDRTEAGTEAIPGVQKWVI 205
Query: 212 ECNWKVFCDNYLDGGYHVPYAH--KGLASGLQLD 243
CNWK + + YH G+ +GL D
Sbjct: 206 PCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPED 239
>sp|Q07944|BEDC1_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=bedC1 PE=1 SV=1
Length = 450
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 18/214 (8%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
YTD LEL RVF RSW ++G+ ++ P D+F+ +GE VV R + I F N
Sbjct: 36 YTDEDLYQLELERVFARSWLLLGHETHIRKPGDYFTTYMGEDPVVVVRQKDASIAVFLNQ 95
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT-RITGIKDFNVKEFGLVPLEVA 155
CRH I + +G F C YHGW Y G L+ + KE+ + V
Sbjct: 96 CRHRGMRICRSDAGNAKAFTCSYHGWAYDTAGNLINVPYEAESFACLDKKEWSPLKARVE 155
Query: 156 TWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS----YLCRREYTI 211
T+ + N + A+ ++D+ + G ++ + +D + + +++ I
Sbjct: 156 TYKGLIFANWDENAI---DLDTYL-------GEAKFYMDHMLDRTEAGTEVIPGIQKWVI 205
Query: 212 ECNWKVFCDNYLDGGYHV-PYAH-KGLASGLQLD 243
CNWK + + YH AH G+ +GL D
Sbjct: 206 PCNWKFAAEQFCSDMYHAGTTAHLSGIIAGLPED 239
>sp|P37333|BPHA_BURXL Biphenyl dioxygenase subunit alpha OS=Burkholderia xenovorans
(strain LB400) GN=bphA PE=1 SV=3
Length = 459
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 4 SSCYSENLVAAQKLVYEFNPQ-----IPIEKALTPPSSWYTDPSFLALELHRVFYRSWQV 58
SS E A K V + P+ + EK L P Y D S LEL RVF RSW +
Sbjct: 2 SSAIKEVQGAPVKWVTNWTPEAIRGLVDQEKGLLDPRI-YADQSLYELELERVFGRSWLL 60
Query: 59 VGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVC 117
+G+ + + DF + +GE V+ R + I F N CRH I + +G F C
Sbjct: 61 LGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTC 120
Query: 118 PYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169
YHGW Y + G L+ + G F+ E+G + VAT+ V N +A
Sbjct: 121 SYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQA 180
Query: 170 VHQEEVDSNVVANEWLGGSSEILSI---NGIDSSLSYLCRREYTIECNWKVFCDNYLDGG 226
E +LG + + + +++ +++ I CNWK + +
Sbjct: 181 PDLE---------TYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDM 231
Query: 227 YHV 229
YH
Sbjct: 232 YHA 234
>sp|Q52028|BPHA_PSEPS Biphenyl dioxygenase subunit alpha OS=Pseudomonas pseudoalcaligenes
GN=bphA PE=3 SV=1
Length = 458
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 4 SSCYSENLVAAQKLVYEFNPQ-----IPIEKALTPPSSWYTDPSFLALELHRVFYRSWQV 58
SS E A K V + P+ + EK L P Y D S LEL RVF RSW +
Sbjct: 2 SSSIKEVQGAPVKWVTNWTPEAIRGLVDQEKGLLDPRI-YADQSLYELELERVFGRSWLL 60
Query: 59 VGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVC 117
+G+ + + DF + +GE V+ R + I F N CRH I + +G F C
Sbjct: 61 LGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTC 120
Query: 118 PYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169
YHGW Y + G L+ + G F+ E+G + VAT+ V N +A
Sbjct: 121 SYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQA 180
Query: 170 VHQEEVDSNVVANEWLGGSSEILSI---NGIDSSLSYLCRREYTIECNWKVFCDNYLDGG 226
E +LG + + + +++ +++ I CNWK + +
Sbjct: 181 PDLE---------TYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDM 231
Query: 227 YHV 229
YH
Sbjct: 232 YHA 234
>sp|O52379|NAGG_RALSP Salicylate 5-hydroxylase, large oxygenase component OS=Ralstonia
sp. GN=nagG PE=1 SV=1
Length = 423
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 96/236 (40%), Gaps = 31/236 (13%)
Query: 16 KLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRS-WQVVGYTDQLKDPQDFFSG 74
K V+ +P+ P E + P YT EL R+FY + W VG ++ +P DF
Sbjct: 8 KPVFPQDPKWPGEGSSRVPFWAYTREDLYKRELERLFYANHWCYVGLEAEIPNPGDFKRT 67
Query: 75 RIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKA 133
IGE ++ RD +G I+ NVC H G F CPYH W Y L G L
Sbjct: 68 VIGERSVIMVRDPDGGINVVENVCAHRGMRFCRERHGNAKDFFCPYHQWNYSLKGDLQGV 127
Query: 134 TRITGI-----------KDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVAN 182
G+ KDF ++E GL L+VA G V + D +V
Sbjct: 128 PFRRGVKQDGKVNGGMPKDFKLEEHGLTKLKVAARGGAVFASF----------DHDVEPF 177
Query: 183 EWLGGSSEILSINGI--DSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGL 236
E G + + + + L L R I NWK+ +N D PY H GL
Sbjct: 178 EEFLGPTILHYFDRVFNGRKLKILGYRRQRIPGNWKLMQENIKD-----PY-HPGL 227
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 25/233 (10%)
Query: 13 AAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFF 72
A ++L+ P+ +TD + E+ +F ++W + + Q+ +P D+
Sbjct: 13 AVRQLISNAVQNDPVSGNFRCRRDIFTDAALFDYEMKYIFEQNWVFLAHESQVANPDDYL 72
Query: 73 SGRIGEVEFVVCRDDNGKIHAFHNVCRHH-ASILATGSGKKSWFVCPYHGWTYGLDGTLL 131
IG ++ R+ G + A N C H A + G +S F C +HGWT+ G LL
Sbjct: 73 VSNIGRQPVIITRNKAGDVSAVINACSHRGAELCRRKQGNRSTFTCQFHGWTFSNTGKLL 132
Query: 132 KATRITGIKD-----FNVK---EFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANE 183
K G D FNV + +P A + F+ +M +A E E
Sbjct: 133 KVK--DGQDDNYPEGFNVDGSHDLTRIP-SFANYRGFLFGSMNPDACPIE---------E 180
Query: 184 WLGGSSEILS--INGIDSSLSYL-CRREYTIECNWKVFCDNYLDGGYHVPYAH 233
LGGS IL I+ L L Y + NWK+ +N D GYHV H
Sbjct: 181 HLGGSKAILDQVIDQTPGELEVLRGSSSYIYDGNWKLQIENGAD-GYHVGSVH 232
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 36 SWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFH 95
S +TD + LE+ +F +W + + Q+ + D+++ IG ++ R+ NG+++A
Sbjct: 33 SVFTDQALFDLEMKYIFEGNWVYLAHESQIPNNNDYYTTYIGRQPILIARNRNGELNAMI 92
Query: 96 NVCRHHASILAT-GSGKKSWFVCPYHGWTYGLDGTLLKATRIT--GIKDFNVKEFGLVPL 152
N C H + L G K+ + CP+HGWT+ G LLK + G D ++
Sbjct: 93 NACSHRGAQLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPSDAGYSDCFNQDGSHDLK 152
Query: 153 EVATWGPFVLLNMGKEAVHQEEVDSNVVA-NEWLGGSSEILS--INGIDSSLSYL-CRRE 208
+VA + + G ++ +V + E+LG +++I+ + D L L
Sbjct: 153 KVARFESYKGFLFGS-------LNPDVPSLQEFLGETTKIIDMIVGQSDQGLEVLRGVST 205
Query: 209 YTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQ 241
YT E NWK+ +N D GYHV H A+ Q
Sbjct: 206 YTYEGNWKLTAENGAD-GYHVSAVHWNYAATTQ 237
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 44/236 (18%)
Query: 17 LVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRI 76
++YE + E LT + D EL +F R+W + + + P D+ + ++
Sbjct: 1 MIYE---NLVSEAGLTQKHLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVTAKM 57
Query: 77 GEVEFVVCRDDNGKIHAFHNVCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTL----- 130
G E +V R ++G + AF NVCRH L +G FVC YHGW +G +G L
Sbjct: 58 GVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVPF 117
Query: 131 -------------LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDS 177
L + I+ F+ +G E P ++ +G A + E +
Sbjct: 118 EKELYGDTIKKKCLGLKEVPRIESFHGFIYGCFDAEA----PTLVDYLGDAAWYLEPIFK 173
Query: 178 NVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
+ E +G +++ I+ NWK +N++ YHV + H
Sbjct: 174 HSGGLELVGPPGKVV------------------IKANWKAPAENFVGDAYHVGWTH 211
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 23/239 (9%)
Query: 7 YSENLVAAQKLVYE-------FNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVV 59
YSE V A + ++ + +K L P Y D +EL R+F RSW ++
Sbjct: 4 YSEREVQAVPMTFKRRWTDEAIRALVDQDKGLIDPRI-YADQDLYEIELERIFARSWLLL 62
Query: 60 GYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVCP 118
G+ + D+ + +GE ++ R +G I F N CRH I + +G F C
Sbjct: 63 GHEAHIPKTGDYLTTYMGEDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCT 122
Query: 119 YHGWTYGLDGTLLKAT--------RITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAV 170
YHGW Y + G L+ + G F+ ++G + V T+ + N EA
Sbjct: 123 YHGWAYDIAGNLVNVPYEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLIFANWDAEAP 182
Query: 171 HQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHV 229
+ S+ + +++ + +++ I CNWK + + YH
Sbjct: 183 DLKTYLSDAMP------YMDVMLDRTEAGTTVVGGMQKWVIPCNWKFAAEQFCSDMYHA 235
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 33/227 (14%)
Query: 22 NPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEF 81
N + E LT + D EL +F R+W + + + P D+ + ++G E
Sbjct: 5 NKNLVSESGLTQKHLIHGDEELFQRELETIFARNWLFLTHDSLIPSPGDYVTAKMGVDEV 64
Query: 82 VVCRDDNGKIHAFHNVCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTLLKA------- 133
+V R ++G I AF NVCRH L +G FVC YHGW +G +G L
Sbjct: 65 IVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVPFEKELY 124
Query: 134 -----TRITGIKDF-NVKEF-GLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLG 186
+ G+K+ V+ F G + P + MG + E + + E +G
Sbjct: 125 GEALDKKCMGLKEVARVESFHGFIYGCFDEEAPSLKDYMGDAGWYLEPMFKHSGGLELIG 184
Query: 187 GSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
+++ I+ NWK +N+ YHV + H
Sbjct: 185 PPGKVI------------------IKANWKAPAENFTGDAYHVGWTH 213
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
+TDP LE+ +F +W + + Q+ + D+++ ++G + R+ +G+++AF N
Sbjct: 32 FTDPRLFDLEMKHIFEGNWIYLAHESQIPEKNDYYTTQMGRQPIFITRNKDGELNAFVNA 91
Query: 98 CRHHASILAT-GSGKKSWFVCPYHGWTYGLDGTLLKATRITGIK-----DFNVKEFGLVP 151
C H + L SG K+ C +HGWT+ G LLK G D +
Sbjct: 92 CSHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKVKDPKGAGYPDSFDCDGSHDLKKV 151
Query: 152 LEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYL----CRR 207
A++ F+ ++ ++ E E+LG S +++ + +D S L
Sbjct: 152 ARFASYRGFLFGSLREDVAPLE---------EFLGESRKVIDMV-VDQSPEGLEVLRGSS 201
Query: 208 EYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQ 241
Y E NWKV +N D GYHV H A+ Q
Sbjct: 202 TYVYEGNWKVQVENGAD-GYHVSTVHWNYAATQQ 234
>sp|Q46372|BPHA_COMTE Biphenyl dioxygenase subunit alpha OS=Comamonas testosteroni
GN=bphA PE=1 SV=1
Length = 457
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 38 YTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNV 97
Y D LEL RVF RSW ++G+ + D+ + +GE ++ R + I F N
Sbjct: 40 YADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQ 99
Query: 98 CRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTLLKAT--------RITGIKDFNVKEFG 148
CRH I+ + G F C YHGW Y + G L+ + G F+ ++G
Sbjct: 100 CRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWG 159
Query: 149 LVPLEVATWGPFVLLNMGKEAVHQEEVDS------NVVANEWLGGSSEILSINGIDSSLS 202
+ V T+ V N EA + S +V+ + G+ I I
Sbjct: 160 PLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTEAIGGI-------- 211
Query: 203 YLCRREYTIECNWKVFCDNYLDGGYHV 229
+++ I CNWK + + YH
Sbjct: 212 ----QKWVIPCNWKFAAEQFCSDMYHA 234
>sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas sp.
(strain C18) GN=doxB PE=1 SV=1
Length = 449
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 21 FNPQIPI-EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEV 79
+N +I + E L+ + D EL +F R+W + + + P D+ + ++G
Sbjct: 3 YNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGID 62
Query: 80 EFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTL-------- 130
E +V R ++G I AF NVCRH ++++ +G FVC YHGW +G +G L
Sbjct: 63 EVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKD 122
Query: 131 ----------LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVV 180
L + ++ F+ +G E P ++ +G A + E + +
Sbjct: 123 LYGESLNKKCLGLKEVARVESFHGFIYGCFDQEA----PPLMDYLGDAAWYLEPMFKHSG 178
Query: 181 ANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
E +G +++ I+ NWK +N++ YHV + H
Sbjct: 179 GLELVGPPGKVV------------------IKANWKAPAENFVGDAYHVGWTH 213
>sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=ndoB PE=1 SV=1
Length = 449
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 21 FNPQIPI-EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEV 79
+N +I + E L+ + D EL +F R+W + + + P D+ + ++G
Sbjct: 3 YNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGID 62
Query: 80 EFVVCRDDNGKIHAFHNVCRHHA-SILATGSGKKSWFVCPYHGWTYGLDGTL-------- 130
E +V R ++G I AF NVCRH ++++ +G FVC YHGW +G +G L
Sbjct: 63 EVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKD 122
Query: 131 ----------LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVV 180
L + ++ F+ +G E P ++ +G A + E + +
Sbjct: 123 LYGESLNKKCLGLKEVARVESFHGFIYGCFDQEA----PPLMDYLGDAAWYLEPMFKHSG 178
Query: 181 ANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
E +G +++ I+ NWK +N++ YHV + H
Sbjct: 179 GLELVGPPGKVV------------------IKANWKAPAENFVGDAYHVGWTH 213
>sp|O07824|NDOB_PSEFL Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas
fluorescens GN=ndoB PE=3 SV=1
Length = 449
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 41/231 (17%)
Query: 22 NPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEF 81
N + E LT + D EL + R+W + + + P D+ + ++G E
Sbjct: 5 NKILVSESGLTQKHLIHGDEELFQHELRTIXARNWLFLTHDSLIPSPGDYVTAKMGIDEV 64
Query: 82 VVCRDDNGKIHAFHNVCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTL---------- 130
+V R +G I AF NVCRH L +G FVC YHGW +G +G L
Sbjct: 65 IVSRQSDGSIRAFLNVCRHRGKTLVNAEAGNAKGFVCSYHGWGFGSNGELQSVPFEKELY 124
Query: 131 --------LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVAN 182
L + ++ F+ +G E P ++ +G A + E + +
Sbjct: 125 GESLNKKCLGLKEVARVESFHGFIYGCFDQEA----PSLMDYLGDAAWYLEPIFKHSGGL 180
Query: 183 EWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAH 233
E +G +++ I+ NWK +N++ YHV + H
Sbjct: 181 ELVGPPGKVV------------------IKANWKAPAENFVGDAYHVGWTH 213
>sp|Q84BZ3|ANDAC_BURCE Anthranilate 1,2-dioxygenase large subunit OS=Burkholderia cepacia
GN=andAc PE=1 SV=1
Length = 423
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 136/357 (38%), Gaps = 72/357 (20%)
Query: 47 ELHRVFY-RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHH-ASI 104
E R+F +W V ++ + DF S +G+ VV R ++G + A+ N C H A +
Sbjct: 43 EQERIFRGPTWNFVALEAEIPNAGDFKSTFVGDTPVVVTRTEDGALSAWVNRCAHRGAQV 102
Query: 105 LATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIK-------DFNVKEFGLVPLEVATW 157
G S C YH W++ +G LL G K DF+ K+ GL L V ++
Sbjct: 103 CRKSRGNASSHTCVYHQWSFDNEGNLLGVPFRRGQKGMTGMPADFDPKQHGLRKLRVDSY 162
Query: 158 GPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYL-CRREYTIECNWK 216
V D ++LG + YL C R+Y+ + NWK
Sbjct: 163 RGLVFATFS---------DDVAPLPDYLGAQMRPWIDRIFHKPIEYLGCTRQYS-KSNWK 212
Query: 217 VFCDNYLDGGYH----------------------VPYAHKGLASGLQLDSY---STSLYE 251
++ +N D YH +P A+ GL S + + +++ Y+
Sbjct: 213 LYMENVKD-PYHASMLHLFHTTFNIFRVGMKARSIPDANHGLHSIITVTKTGDDTSAAYK 271
Query: 252 KVSIQRCESG------------STEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLV 299
+ +I+ + G S D T+ + I+P +I + + +
Sbjct: 272 QQNIRSFDEGFHLEDESILDLVSEYDEDCTNHIQP------IFPQLVIQQIHNTLVARQI 325
Query: 300 IPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQV------QMEDIILCEGVQRG 350
+P P +++F +F G D +K + V MED E VQRG
Sbjct: 326 LPKGPDNFELIFHFF--GYADDTPELRALRIKQANLVGPAGYISMEDTEATELVQRG 380
>sp|Q3C1D5|TPDA2_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 2 OS=Comamonas sp. GN=tphA2II PE=1 SV=1
Length = 413
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 145/367 (39%), Gaps = 57/367 (15%)
Query: 34 PSSWYTDPSFLALELHRVFY-RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIH 92
P YTD + E R++ W + ++ DF + GE VV RD + +I+
Sbjct: 17 PFGIYTDTANADQEQQRIYRGEVWNYLCLESEIPGAGDFRTTFAGETPIVVVRDADQEIY 76
Query: 93 AFHNVCRHHASILA-TGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIK-------DFNV 144
AF N C H +++A SG+ F C YH W+Y G L G+K F
Sbjct: 77 AFENRCAHRGALIALEKSGRTDSFQCVYHAWSYNRQGDLTGVAFEKGVKGQGGMPASFCK 136
Query: 145 KEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYL 204
+E G L VA + V + E+V S ++LG + + +
Sbjct: 137 EEHGPRKLRVAVFCGLVFGSF------SEDVPS---IEDYLGPEICERIERVLHKPVEVI 187
Query: 205 CRREYTIECNWKVFCDNYLD------------------------------GGYHVPYAHK 234
R + NWK++ +N D GG+HV Y+
Sbjct: 188 GRFTQKLPNNWKLYFENVKDSYHASLLHMFFTTFELNRLSQKGGVIVDESGGHHVSYSM- 246
Query: 235 GLASGLQLDSYS-TSLYEKVSIQRCESGS-TEGTDDTHRLGSKAIYAFIYPNFMINRYGP 292
+ G + DSY ++ R + S EG ++ + I + ++P F++ +
Sbjct: 247 -IDRGAKDDSYKDQAIRSDNERYRLKDPSLLEGFEEFEDGVTLQILS-VFPGFVLQQIQN 304
Query: 293 WMDTNLVIPLAPTRCKVVFDY--FLDGSLKDDKAFIEQS--LKDSEQVQMEDIILCEGVQ 348
+ ++P + + ++ + Y + D S + K ++Q+ + + + MED + VQ
Sbjct: 305 SIAVRQLLPKSISSSELNWTYLGYADDSAEQRKVRLKQANLIGPAGFISMEDGAVGGFVQ 364
Query: 349 RGLESPA 355
RG+ A
Sbjct: 365 RGIAGAA 371
>sp|Q3C1E3|TPDA1_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 1 OS=Comamonas sp. GN=tphA2I PE=1 SV=1
Length = 413
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 19/209 (9%)
Query: 34 PSSWYTDPSFLALELHRVFY-RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIH 92
P YTD + E R++ W + ++ DF + GE VV RD + +I+
Sbjct: 17 PFGIYTDTANADQEQQRIYRGEVWNYLCLESEIPGAGDFRTTFAGETPIVVVRDADQEIY 76
Query: 93 AFHNVCRHHASILA-TGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIK-------DFNV 144
AF N C H +++A SG+ F C YH W+Y G L G+K F
Sbjct: 77 AFENRCAHRGALIALEKSGRTDSFQCVYHAWSYNRQGDLTGVAFEKGVKGQGGMPASFCK 136
Query: 145 KEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYL 204
+E G L VA + V + E+V S ++LG + + +
Sbjct: 137 EEHGPRKLRVAVFCGLVFGSF------SEDVPS---IEDYLGPEICERIERVLHKPVEVI 187
Query: 205 CRREYTIECNWKVFCDNYLDGGYHVPYAH 233
R + NWK++ +N D YH H
Sbjct: 188 GRFTQKLPNNWKLYFENVKD-SYHASLLH 215
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 56 WQVVGYTDQLKD----PQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGK 111
W V ++ LKD P D F E ++V+ R +G+ N C H A L GS
Sbjct: 220 WYPVAFSSDLKDDTMVPIDCF-----EEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVN 274
Query: 112 KSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVK 145
+ CPYHGW Y DG K ++ K NV+
Sbjct: 275 EGRIQCPYHGWEYSTDG---KCEKMPSTKMLNVR 305
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 56 WQVVGYTDQLKD----PQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGK 111
W V +T LK P + F E +V+ R ++GK N C H A L G+
Sbjct: 221 WYPVAFTADLKHDTMVPIECF-----EQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVN 275
Query: 112 KSWFVCPYHGWTYGLDGTLLK--ATRITGIK 140
+ CPYHGW Y DG K +T++ +K
Sbjct: 276 EGRIQCPYHGWEYSTDGECKKMPSTKLLKVK 306
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 48 LHRVFYRSWQVVGYTDQLKDPQDF-FSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILA 106
+ ++ R W V +++ +P R+ + VV RD +G++ C H L
Sbjct: 19 MGQMMRRHWTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGVMDEYCPHRRVSLI 78
Query: 107 TGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMG 166
G + S C YHGW +DG +++ + ++ + WG FV MG
Sbjct: 79 YGRNENSGLRCLYHGWKMDVDGNVVEMVSEPAASNM-CQKVKHTAYKTREWGGFVWAYMG 137
Query: 167 KE 168
+
Sbjct: 138 PQ 139
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 52 FYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGK 111
+ R W +G D + S I + VV D G+++ CRH L+ G+ K
Sbjct: 20 YARGWHCLGPVKNFSDGKPH-SVNIFGTKLVVFADSKGELNVLDAYCRHMGGDLSKGTVK 78
Query: 112 KSWFVCPYHGWTYGLDG 128
CP+H W +G DG
Sbjct: 79 GDEVACPFHDWRWGGDG 95
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 52 FYRSWQVVGYTDQLKDPQDFFSGRIGEVE-----FVVCRDDNGKIHAFHNVCRHHASILA 106
+ R W +G +D+ G+ VE VV D +G + CRH L+
Sbjct: 22 YARGWHCLGVA------KDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLS 75
Query: 107 TGSGKKSWFVCPYHGWTYGLDG 128
G+ K CP+H W +G DG
Sbjct: 76 EGTVKGDEVACPFHDWRWGGDG 97
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 54 RSWQVVGYTDQLKD-PQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKK 112
R WQ V + + D PQ RI + V+ RD G+ + C H + L G ++
Sbjct: 43 RYWQPVALSADVTDRPQMV---RILGEDLVLFRDKAGRPGLLYPRCMHRGTSLYYGHVEE 99
Query: 113 SWFVCPYHGWTYGLDGTLL 131
+ C YHGW + +DGT L
Sbjct: 100 AGIRCCYHGWLFAVDGTCL 118
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 81 FVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLK 132
+V+ RD+ G+ + C H L+ G + +CPYHGW + DG K
Sbjct: 329 WVMFRDEKGQPSCIRDECAHRGCPLSLGKVVEGQVMCPYHGWEFNGDGACTK 380
>sp|Q3TY86|AIFM3_MOUSE Apoptosis-inducing factor 3 OS=Mus musculus GN=Aifm3 PE=2 SV=1
Length = 605
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 69 QDFFSGRIGEVEF----VVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTY 124
+D +G++ EVE V+ DNG+ HA + C H+ + L G + CP+HG +
Sbjct: 76 KDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVLSRGRVRCPWHGACF 135
Query: 125 GLD-GTLLKATRITGIKDFNVK 145
+ G L + + F VK
Sbjct: 136 NISTGDLEDFPGLDSLHKFQVK 157
>sp|Q96NN9|AIFM3_HUMAN Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1
Length = 605
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 69 QDFFSGRIGEVEF----VVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTY 124
+D +G++ EVE V+ DNG+ HA + C H+ + L G + CP+HG +
Sbjct: 76 KDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVLSRGRVRCPWHGACF 135
Query: 125 GLD-GTLLKATRITGIKDFNVK 145
+ G L + + F VK
Sbjct: 136 NISTGDLEDFPGLDSLHKFQVK 157
>sp|P22944|NIR_EMENI Nitrite reductase [NAD(P)H] OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=niiA PE=3
SV=2
Length = 1104
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 22 NPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKD-PQDFFSGRI--GE 78
N +I E+ P+ W D + + H+ SWQ V D D P S I G+
Sbjct: 898 NVEIVKEREQVRPTYWPKDGANEDFKGHQWSSLSWQPVIKADYFSDGPPAISSANIKRGD 957
Query: 79 VEFVVCRDDNGKIHAFHNVCRHHAS-ILATG-----SGKKSWFVCPYHGWTYGLDGTLLK 132
+ + + GK +A +C H + +L+ G K W CPYH + L+G +
Sbjct: 958 TQLAIFKV-KGKYYATQQMCPHKRTFVLSDGLIGDDDNGKYWVSCPYHKRNFELNGE--Q 1014
Query: 133 ATRITGIKDFNVKEF 147
A R + N+ F
Sbjct: 1015 AGRCQNDEAMNIATF 1029
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 55 SWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSW 114
+W V D++ D +I + V R G++ A + C H + L+ G +
Sbjct: 6 AWYVACTPDEIADKP--LGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDGK 63
Query: 115 FVCPYHGWTYGLDGTLLK--ATRITG---IKDFNVKE 146
+C YHG G +G L R+ G IK + V+E
Sbjct: 64 LICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEE 100
>sp|P42436|NASE_BACSU Assimilatory nitrite reductase [NAD(P)H] small subunit OS=Bacillus
subtilis (strain 168) GN=nasE PE=2 SV=1
Length = 106
Score = 37.7 bits (86), Expect = 0.16, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 76 IGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLK 132
I + E V + +G I A N C H +LA G + CP H W L+ +++
Sbjct: 27 IEDKELAVFKLSDGSIRAIENRCPHKGGVLAEGIVSGQYVFCPMHDWKISLEDGIVQ 83
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 45 ALELHRVFYRSWQVVGYTDQLKD----PQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRH 100
+LEL W + +L+ P D F V +V+ RD++ + C H
Sbjct: 123 SLELEDGLRNFWYPTEFAKKLEPGMMVPFDLFG-----VPWVLFRDEHSAPTCIKDSCAH 177
Query: 101 HASILATGSGKKSWFVCPYHGWTYGLDG--TLLKATRI 136
A L+ G CPYHGW + G T + +TR+
Sbjct: 178 RACPLSLGKVINGHVQCPYHGWEFDGSGACTKMPSTRM 215
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 21/163 (12%)
Query: 80 EFVVCRDDNGKIHAFHNVCRHHASILATGSG--KKSWFVCPYHGWTYGL-DGTLLKATRI 136
E ++ GK++A + C H L+ K+ C YHGWTY DG L+
Sbjct: 51 EKILLNRVGGKVYAIQDRCLHRGVTLSDRVECYSKNTISCWYHGWTYRWDDGRLVDILTN 110
Query: 137 TGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSING 196
G + P+E A FV + G+ E+V + E +I+G
Sbjct: 111 PGSVQIGRRALKTFPVEEAKGLIFVYVGDGEPTPLIEDVPPGFL--------DENRAIHG 162
Query: 197 IDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASG 239
+ + NW++ +N D G+ + + + L G
Sbjct: 163 ----------QHRLVASNWRLGAENGFDAGHVLIHKNSILVKG 195
>sp|Q29HG0|PGAM5_DROPS Serine/threonine-protein phosphatase Pgam5, mitochondrial
OS=Drosophila pseudoobscura pseudoobscura GN=Pgam5 PE=3
SV=1
Length = 289
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 23 PQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFV 82
PQ P+ S ++ D + + R FYR+ Y DQ KD G + +
Sbjct: 174 PQPPVGHWKPEASQFFRDGARIEAAFRRYFYRA-----YPDQTKDSYTLLVGHGNVIRYF 228
Query: 83 VCRDDNGKIHAFHNVCRHHASI 104
VCR A+ + +HASI
Sbjct: 229 VCRALQFPPEAWLRISINHASI 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,741,665
Number of Sequences: 539616
Number of extensions: 6658615
Number of successful extensions: 11951
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11822
Number of HSP's gapped (non-prelim): 90
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)