Query 039874
Match_columns 382
No_of_seqs 235 out of 2062
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 03:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n0q_A Putative aromatic-ring 100.0 9.5E-68 3.3E-72 518.3 30.5 339 30-381 16-398 (409)
2 3vca_A Ring-hydroxylating diox 100.0 3.3E-67 1.1E-71 514.9 29.4 339 30-381 18-401 (412)
3 3gzx_A Biphenyl dioxygenase su 100.0 4.2E-55 1.4E-59 433.6 28.3 340 30-381 32-448 (457)
4 2b1x_A Naphthalene dioxygenase 100.0 2E-54 6.9E-59 433.7 30.2 342 30-381 20-436 (470)
5 2gbw_A Biphenyl 2,3-dioxygenas 100.0 1E-54 3.4E-59 434.3 27.9 340 30-381 12-422 (454)
6 2bmo_A Oxygenase-alpha NBDO; n 100.0 6.2E-54 2.1E-58 428.0 26.8 342 28-381 8-423 (447)
7 1uli_A Biphenyl dioxygenase la 100.0 3E-53 1E-57 423.9 24.6 340 30-381 30-440 (460)
8 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1.6E-50 5.5E-55 402.7 27.2 340 28-381 16-406 (446)
9 3gke_A DDMC; rieske cluster, n 100.0 2.1E-49 7.1E-54 382.8 20.8 309 50-381 3-336 (349)
10 2zyl_A Possible oxidoreductase 100.0 5.7E-49 1.9E-53 384.4 22.0 302 50-381 20-338 (386)
11 2de6_A Terminal oxygenase comp 100.0 5.9E-46 2E-50 364.5 25.0 312 45-381 18-374 (392)
12 3gkq_A Terminal oxygenase comp 100.0 2.5E-41 8.6E-46 324.1 28.4 310 46-379 22-373 (389)
13 3gcf_A Terminal oxygenase comp 100.0 6.8E-41 2.3E-45 322.0 27.9 310 46-379 25-376 (394)
14 2qpz_A Naphthalene 1,2-dioxyge 100.0 1E-27 3.4E-32 190.8 12.9 101 54-166 2-103 (103)
15 1fqt_A Rieske-type ferredoxin 99.9 1.5E-27 5.2E-32 192.7 13.3 104 54-169 4-109 (112)
16 1vm9_A Toluene-4-monooxygenase 99.9 1.1E-27 3.6E-32 193.4 11.2 103 55-169 1-105 (111)
17 2i7f_A Ferredoxin component of 99.9 7.5E-28 2.6E-32 193.3 9.7 103 55-169 3-107 (108)
18 2de6_D Ferredoxin component of 99.9 1.7E-27 5.7E-32 193.3 11.3 104 54-169 3-108 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 1.4E-27 4.6E-32 191.1 10.5 102 55-168 1-103 (106)
20 3d89_A Rieske domain-containin 99.9 5.2E-28 1.8E-32 207.1 7.8 116 52-169 13-137 (157)
21 3gce_A Ferredoxin component of 99.9 1.4E-26 4.7E-31 189.5 13.0 103 55-169 10-115 (121)
22 2jo6_A Nitrite reductase [NAD( 99.9 1.2E-26 4E-31 187.8 12.2 102 54-167 5-113 (113)
23 2jza_A Nitrite reductase [NAD( 99.9 3.9E-27 1.3E-31 195.2 9.2 104 55-170 3-113 (130)
24 3c0d_A Putative nitrite reduct 99.9 6.9E-27 2.4E-31 190.8 10.2 104 54-169 4-113 (119)
25 4aiv_A Probable nitrite reduct 99.9 5E-26 1.7E-30 185.1 9.4 101 54-166 8-116 (119)
26 1rie_A Rieske iron-sulfur prot 99.9 4.8E-22 1.7E-26 164.0 13.1 98 54-163 4-128 (129)
27 1rfs_A Rieske protein; iron-su 99.9 9.3E-23 3.2E-27 170.3 8.1 104 54-168 20-126 (139)
28 1g8k_B Arsenite oxidase; molyb 99.9 2.2E-21 7.7E-26 160.9 11.8 100 53-164 5-119 (133)
29 4aay_B AROB; oxidoreductase, r 99.8 2.7E-20 9.3E-25 160.7 10.2 101 52-164 47-161 (175)
30 3azc_A Cytochrome B6-F complex 99.7 2.4E-21 8.1E-26 159.7 0.0 102 55-168 15-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.8 1.1E-18 3.7E-23 152.3 13.3 100 52-163 59-184 (185)
32 1pp9_E Ubiquinol-cytochrome C 99.8 1.5E-18 5.2E-23 152.5 11.9 95 58-163 74-195 (196)
33 2nwf_A Ubiquinol-cytochrome C 99.8 2.3E-18 7.7E-23 143.7 11.1 92 61-163 7-140 (141)
34 2qjy_C Ubiquinol-cytochrome C 99.8 3.4E-18 1.2E-22 149.5 12.6 97 55-163 48-186 (187)
35 1nyk_A Rieske iron-sulfur prot 99.7 3.5E-18 1.2E-22 146.3 8.8 97 61-169 26-150 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 1.3E-18 4.6E-23 151.5 0.7 94 62-167 70-166 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 9.2E-18 3.1E-22 148.4 -0.3 86 72-167 56-168 (204)
38 1yo3_A Dynein light chain 1; s 38.5 78 0.0027 23.7 6.1 44 42-86 53-101 (102)
39 3rjs_A Dynein light chain moto 37.8 67 0.0023 23.4 5.5 44 42-86 40-88 (89)
40 4ds1_A Dynein light chain 1, c 27.0 81 0.0028 23.4 4.4 45 42-86 48-96 (97)
41 3las_A Putative carbonic anhyd 21.6 28 0.00095 28.8 1.0 16 118-133 149-165 (166)
No 1
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=9.5e-68 Score=518.34 Aligned_cols=339 Identities=22% Similarity=0.400 Sum_probs=280.8
Q ss_pred CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCcccc-C
Q 039874 30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILAT-G 108 (382)
Q Consensus 30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~-g 108 (382)
+.+||+++|+|+++|++|+++||++.|++||++++|+++|++++++++|++|+|+|+.+|+++||.|+|||||++|+. |
T Consensus 16 ~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g 95 (409)
T 3n0q_A 16 GHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAK 95 (409)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSS
T ss_pred cccCCHHHcCCHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcC
Confidence 578999999999999999999999999999999999989999999999999999999999999999999999999994 8
Q ss_pred CCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCCh
Q 039874 109 SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGS 188 (382)
Q Consensus 109 ~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~ 188 (382)
.++++.|+||||||+||++|+|+.+|..+ +++++...+|++++|++++|+|||++++++ ++++++++++
T Consensus 96 ~~~~~~i~CpyHgw~fd~dG~~~~~P~~~--~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~---------~~l~~~l~~~ 164 (409)
T 3n0q_A 96 KGNNPKLVCPYHQWTYELDGRLLWARDMG--PDFEPSRHGLKTVHCRELAGLIYICLADEA---------PDFERFAEVA 164 (409)
T ss_dssp EEECSSEECTTTCCEECTTSCEEECTTCC--TTCCGGGCSCCEEEEEEETTEEEEECSSSC---------CCCHHHHHHH
T ss_pred ccCCCEEEECCCCCEEeCCCCcccCCcCC--cccCcccCCCceEEEEEECCEEEEEeCCCC---------CChHHhhhhh
Confidence 88888999999999999999999999764 356777899999999999999999999876 3678888877
Q ss_pred hhhhhhcCCCCCeEEEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCCc-c--------cccc------------
Q 039874 189 SEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL-D--------SYST------------ 247 (382)
Q Consensus 189 ~~~l~~~~~d~~~~~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~-~--------~~~~------------ 247 (382)
...+..+++ +++.+.....+.++||||+++||++| +||++++|+++++.+.. . .+..
T Consensus 165 ~~~l~~~~~-~~~~~~~~~~~~~~~NWK~~~EN~~D-~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (409)
T 3n0q_A 165 RPYLEVHDL-SNAKVAHESSIVERGNWKLVWENNRE-CYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQA 242 (409)
T ss_dssp HHHHHTTCG-GGEEEEEEEEEEESSCHHHHHHHHTC-CTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHT
T ss_pred hhhhccccC-CCeEEeeEEEEEEecchHhhhhhccc-cccccccCcchhhccccccccccccccccccchhhhhhhhhcc
Confidence 788888877 56776667788999999999999999 89999999998764321 0 0000
Q ss_pred --c--c----cCceeeeeecCCCC---CCCc----------cccccCCccEEEEecCceeeccCCCeEEEEEEEEcCCCe
Q 039874 248 --S--L----YEKVSIQRCESGST---EGTD----------DTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTR 306 (382)
Q Consensus 248 --~--~----~~~~~~~~~~~~~~---~~~~----------~~~~~g~~~~~~~lfPn~~i~~~~~~~~~~~~~P~s~~~ 306 (382)
. + .+++++++.+.... ...+ .+...+....+.++|||+++..+++++.++++.|+|+++
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~pd~~~~~~~~P~~p~~ 322 (409)
T 3n0q_A 243 GMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTPISPTE 322 (409)
T ss_dssp TCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEECSSCEEEEEEEEEETTE
T ss_pred CCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEECCCEEEEEEEEECCCCe
Confidence 0 0 02233443321110 0000 111112235667899999999999999999999999999
Q ss_pred EEEEEEEEEcCCCCChHHH-HHHhccccCCchhhHHHHHHHHhhcccCCCCCCCCCCCCcChHHHHHHHHHHHHhc
Q 039874 307 CKVVFDYFLDGSLKDDKAF-IEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 307 t~v~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ED~~i~e~~q~~l~s~~~~~g~~~~~~E~~i~~f~~~~~~~l~ 381 (382)
|++++.+|+.++..+..++ .+.+.+++.+|..||.+|+|++|+|++|+++.+|+|++.+|.++.+||+|+++.|.
T Consensus 323 t~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s~~~E~~v~~F~~w~~~~l~ 398 (409)
T 3n0q_A 323 TEVTTKWLVHKDAVEGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLK 398 (409)
T ss_dssp EEEEEEEEEETTCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCTTTSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccHhHHHHHHHHHHHHH
Confidence 9999999998877643332 34555677889999999999999999999999999998899999999999999875
No 2
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=3.3e-67 Score=514.95 Aligned_cols=339 Identities=24% Similarity=0.447 Sum_probs=279.6
Q ss_pred CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccc-cC
Q 039874 30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILA-TG 108 (382)
Q Consensus 30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~-~g 108 (382)
+.+||+++|+|+++|++|+++||++.|++||++++|+++|++++++++|++|+|+|+.+|+++||.|+|||||++|+ .|
T Consensus 18 ~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g 97 (412)
T 3vca_A 18 GFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKAR 97 (412)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSS
T ss_pred cCcCCHHHcCCHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeeccc
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999998 78
Q ss_pred CCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCCh
Q 039874 109 SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGS 188 (382)
Q Consensus 109 ~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~ 188 (382)
.++++.|+||||||+||++|+|+.+|... +.+++...+|++|+|++++|+|||++++++ ++++++++++
T Consensus 98 ~~~~~~i~CPyHgw~fdldG~~~~~P~~~--~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~---------p~l~~~l~~~ 166 (412)
T 3vca_A 98 QGQVAKLVCPYHQWTYELDGKLIWANDMG--PDFDASKYGLKPVNLRNLDGLIYICLSDTP---------PDFQTFAQLA 166 (412)
T ss_dssp EEECSSEECTTTCCEECTTSCEEECTTCC--TTCCGGGCSCCEEEEEEETTEEEEECSSSC---------CCCHHHHHHH
T ss_pred ccCCCEEEcCCCCCEEcCCCccccCCccc--cccCcccCCCcEEEEEEECCEEEEEecCCC---------CCHHHHhhhh
Confidence 88888999999999999999999999754 356777899999999999999999999876 3678888877
Q ss_pred hhhhhhcCCCCCeEEEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCCc-------cccc---------------
Q 039874 189 SEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL-------DSYS--------------- 246 (382)
Q Consensus 189 ~~~l~~~~~d~~~~~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~-------~~~~--------------- 246 (382)
...|..+++ +++.+.....+.++||||+++||++| +||++++|+++++.... +.|.
T Consensus 167 ~~~l~~~~~-~~~~~~~~~~~~~~~NWK~~~EN~~D-~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3vca_A 167 RPYLEVHDL-KDAKVAFTSTIIEKGNWKLVWENNRE-CYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEA 244 (412)
T ss_dssp HHHHHTTCG-GGEEEEEEEEEEESSCHHHHHHHHTC-CTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHH
T ss_pred HHhhccccC-CCeEEeEEEEEEEccCchhhHhhccc-cccCcccCcchhhcccccccccccccccccccchhhhhhhhhc
Confidence 788888877 56776667788999999999999999 89999999998664321 1000
Q ss_pred --cc--c----cCceeeeeecCCCC---CCCc----------cccccCCccEEEEecCceeeccCCCeEEEEEEEEcCCC
Q 039874 247 --TS--L----YEKVSIQRCESGST---EGTD----------DTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPT 305 (382)
Q Consensus 247 --~~--~----~~~~~~~~~~~~~~---~~~~----------~~~~~g~~~~~~~lfPn~~i~~~~~~~~~~~~~P~s~~ 305 (382)
.. + .++.++++.+.... ...+ .+...+....+.++|||+++..+++++.++++.|+|++
T Consensus 245 ~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~pd~~~~~~~~P~~~~ 324 (412)
T 3vca_A 245 AGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPT 324 (412)
T ss_dssp TTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEECSSCEEEEEEEEEETT
T ss_pred cCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEECCCEEEEEEEEECCCC
Confidence 00 0 12333443321110 0000 11111223566789999999999999999999999999
Q ss_pred eEEEEEEEEEcCCCCChHHH-HHHhccccCCchhhHHHHHHHHhhcccCCCCCCCCCCCCcChHHHHHHHHHHHHhc
Q 039874 306 RCKVVFDYFLDGSLKDDKAF-IEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 306 ~t~v~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ED~~i~e~~q~~l~s~~~~~g~~~~~~E~~i~~f~~~~~~~l~ 381 (382)
+|++++.+|+.+++.+..++ .+.+.+++.+|..||.+|+|++|+|++|+++..|+|++.+|.++.+||+|+++.|.
T Consensus 325 ~t~v~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~sp~~E~~v~~F~~w~~~~l~ 401 (412)
T 3vca_A 325 ETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLE 401 (412)
T ss_dssp EEEEEEEEEEETTCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCTTTCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEccccccCccHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Confidence 99999999998876642221 34555677889999999999999999999999999998779999999999999875
No 3
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=4.2e-55 Score=433.63 Aligned_cols=340 Identities=20% Similarity=0.316 Sum_probs=253.5
Q ss_pred CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCC
Q 039874 30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS 109 (382)
Q Consensus 30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~ 109 (382)
..+||+++|+|+++|++|+++||++.|++||+++||+++|+++++++++++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 32 ~~~~~~~~Ytd~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g~ 111 (457)
T 3gzx_A 32 NGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSD 111 (457)
T ss_dssp TTEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSS
T ss_pred CCcCCHHHcCCHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCcceEEccCCCceecCCCceeecccccC-C------CC-CCccCCCCcceeeEEECcEEEEEcCCCccccccccccch
Q 039874 110 -GKKSWFVCPYHGWTYGLDGTLLKATRITG-I------KD-FNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVV 180 (382)
Q Consensus 110 -~~~~~i~CpyHgw~f~~~G~~~~~p~~~~-~------~~-~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~ 180 (382)
++++.|+||||||+||++|+|+.+|..+. . .. |+++..+|++++|++++|+|||++++++ ++
T Consensus 112 ~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~a---------p~ 182 (457)
T 3gzx_A 112 GGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEA---------PD 182 (457)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTS---------CC
T ss_pred CCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCC---------CC
Confidence 67789999999999999999999998642 2 24 7888899999999999999999999876 47
Q ss_pred hHhhhCChhhhhhhc-C-CCCCeEEE-EEEEEEeCcccchhhhhc-CCCCCCCC-CcCcccccc-CC----cccc-----
Q 039874 181 ANEWLGGSSEILSIN-G-IDSSLSYL-CRREYTIECNWKVFCDNY-LDGGYHVP-YAHKGLASG-LQ----LDSY----- 245 (382)
Q Consensus 181 ~~e~l~~~~~~l~~~-~-~d~~~~~~-~~~~~~~~~NWK~~vEN~-~D~~yH~~-~vH~~~~~~-~~----~~~~----- 245 (382)
++++++++...|+.+ + ....++++ +..++.++||||+++||+ +| +||++ ++|++++.. .. ....
T Consensus 183 l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D-~yH~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 261 (457)
T 3gzx_A 183 LKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSD-MYHAGTMSHLSGVLAGLPPEMDLTQIQLSKN 261 (457)
T ss_dssp HHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHB-CTTTTTTTTHHHHHHTSCTTCCTTTSCCCCC
T ss_pred hHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccc-cCCcccceehhhhhccccccccccccccccC
Confidence 889999888777665 1 11246655 356789999999999999 89 89999 999986542 11 0000
Q ss_pred ccc--c--cCc-eeeeeecCCC------CCC----C------ccccccCCc------cEEEEecCceeeccCCCeEEEEE
Q 039874 246 STS--L--YEK-VSIQRCESGS------TEG----T------DDTHRLGSK------AIYAFIYPNFMINRYGPWMDTNL 298 (382)
Q Consensus 246 ~~~--~--~~~-~~~~~~~~~~------~~~----~------~~~~~~g~~------~~~~~lfPn~~i~~~~~~~~~~~ 298 (382)
... . .++ +.+....... +.. . ...+++|.. .....||||+++..... ++..
T Consensus 262 g~~~~~~~~GhGh~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~rlG~~~ra~i~~~~~tIFPNl~~~~~~~--~iRv 339 (457)
T 3gzx_A 262 GNQFRSAWGGHGAGWFINDSSILLSVVGPKITQYWTQGPAAEKAARRVPQLPILDMFGQHMTVFPTCSFLPGIN--TIRT 339 (457)
T ss_dssp EEEEECSSSSCEEEEEESCCHHHHHHHHHHHHHHHHSSHHHHHHHHHCTTSCGGGEEEEEEEETTTEEEETTTT--EEEE
T ss_pred CceEeecCCCCceeecccCcchhhhccCccchhhhhhhhhHHHHHHHhhhhhhhhhhcccceecCceeeecccc--eEEE
Confidence 000 0 111 1111110000 000 0 000123321 12346999999864322 5789
Q ss_pred EEEcCCCeEEEEEEEEEcCCCCCh--HHHHH---HhccccCCchhhHHHHHHHHhhcccCCC-------CCC--------
Q 039874 299 VIPLAPTRCKVVFDYFLDGSLKDD--KAFIE---QSLKDSEQVQMEDIILCEGVQRGLESPA-------YCS-------- 358 (382)
Q Consensus 299 ~~P~s~~~t~v~~~~~~~~~~~~~--~~~~~---~~~~~~~~v~~ED~~i~e~~q~~l~s~~-------~~~-------- 358 (382)
+.|+++++|+++.+.++.+++++. ..... .++...+.+..+|.++++.+|+|++... ++.
T Consensus 340 ~~P~gpd~tEvw~~~~~~kdapee~k~~~~~~~~~~fGPaG~~~~DD~e~~~~~q~g~~~~~~~~~~~~~~~g~~~~~~~ 419 (457)
T 3gzx_A 340 WHPRGPNEVEVWAFVLVDADAPEDIKEEFRLQNIRTFNAGGVFEQDDGENWVEIQRVMRGHKAKSTSLCAKMGLNVPNKN 419 (457)
T ss_dssp EEECSTTCEEEEEEEEEETTSCHHHHHHHHHHHHHHSSTTCTTHHHHHHHHHHHHHHTTSTTGGGCEEECCTTTTCCSCC
T ss_pred EEeCCCCeEEEEEEEEEeCCCCHHHHHHHHHHhhhccCCccCCccchHHHHHHHHHHhccCcccccchHhhcCCCCCccc
Confidence 999999999998888888776542 11222 2245667889999999999999987421 111
Q ss_pred -----CCC-CCCcChHHHHHHHHHHHHhc
Q 039874 359 -----GRY-APSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 359 -----g~~-~~~~E~~i~~f~~~~~~~l~ 381 (382)
|.. ....|..++.|++.+++.|+
T Consensus 420 ~~~~pg~~~~~~~E~~~R~~y~~w~~~M~ 448 (457)
T 3gzx_A 420 NPAYPGKTAYVYAEEAARGMYHHWSRMMS 448 (457)
T ss_dssp CTTSSSEEEESBCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCccCCCCCcHHHHHHHHHHHHHhc
Confidence 110 11369999999999999875
No 4
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=2e-54 Score=433.69 Aligned_cols=342 Identities=21% Similarity=0.368 Sum_probs=251.4
Q ss_pred CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCC
Q 039874 30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS 109 (382)
Q Consensus 30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~ 109 (382)
+.+||+++|+|+++|++|+++||++.|++||+++||+++|++++++++|++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~C~Hrga~L~~g~ 99 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAE 99 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSS
T ss_pred CCcCCHHHcCCHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEecccCCCCCEeeccC
Confidence 67899999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred CC-cceEEccCCCceecCCCceeecccccCC--CCCCccCCCCcce-eeEEECcEEEEEcCCCccccccccccchhHhhh
Q 039874 110 GK-KSWFVCPYHGWTYGLDGTLLKATRITGI--KDFNVKEFGLVPL-EVATWGPFVLLNMGKEAVHQEEVDSNVVANEWL 185 (382)
Q Consensus 110 ~~-~~~i~CpyHgw~f~~~G~~~~~p~~~~~--~~~~~~~~~l~~~-~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l 185 (382)
.. ++.|+||||||+||+||+|+.+|..+.. ..|+++..+|+++ +|++++|+|||++++++ +++++++
T Consensus 100 ~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~---------~~~~~~l 170 (470)
T 2b1x_A 100 MGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHA---------DSLEDYL 170 (470)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTC---------CCHHHHH
T ss_pred cCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCC---------CCHHHHh
Confidence 44 4789999999999999999999986542 2477778899999 78889999999998876 3788888
Q ss_pred CChhhhhhhc--CCCCCeEEEE-EEEEEeCcccchhhhhc-CCCCCCCCCcCccccccCCcc---cc---ccc--ccCce
Q 039874 186 GGSSEILSIN--GIDSSLSYLC-RREYTIECNWKVFCDNY-LDGGYHVPYAHKGLASGLQLD---SY---STS--LYEKV 253 (382)
Q Consensus 186 ~~~~~~l~~~--~~d~~~~~~~-~~~~~~~~NWK~~vEN~-~D~~yH~~~vH~~~~~~~~~~---~~---~~~--~~~~~ 253 (382)
+++...+..+ .....++..+ ..++.++||||+++||+ +| +||++++|++++...... .+ ... ....+
T Consensus 171 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D-~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~GH 249 (470)
T 2b1x_A 171 GDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGD-AYHTMMTHRSMVELGLAPPDPQFALYGEHIHTGHGH 249 (470)
T ss_dssp GGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHC-CTTHHHHTHHHHHHTSSCCCTTGGGSEEEEECSTTC
T ss_pred cchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccc-cCcccccChhhhhccccccccccccccceeeccCCc
Confidence 8766555432 1124566554 56788999999999999 99 899999999875421110 11 000 11122
Q ss_pred eeeeecCCCC---CCCccc---------cccC--------Cc-cEEEEecCceeecc----CCC------eEEEEEEEEc
Q 039874 254 SIQRCESGST---EGTDDT---------HRLG--------SK-AIYAFIYPNFMINR----YGP------WMDTNLVIPL 302 (382)
Q Consensus 254 ~~~~~~~~~~---~~~~~~---------~~~g--------~~-~~~~~lfPn~~i~~----~~~------~~~~~~~~P~ 302 (382)
.......... ....++ +.++ .. ..+.++|||+++.. ... .+.+..+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~iFPN~~i~~~~~~~d~~~~~~~~~~ir~~~Pi 329 (470)
T 2b1x_A 250 GLGIIGPPPGMPLPEFMGLPENIVEELERRLTPEQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTAFLTLRLWHPL 329 (470)
T ss_dssp EEEEECCCTTCCCCSGGGCCHHHHHHHHHHSCHHHHHHHTTCSEEEEEETTTEEEEEEEECSSTTSCCEEEEEEEEEEEE
T ss_pred eEEEecCCccccccccccccHHHHHHHHhhhchhhhhhhcccccceEEECCEEEeecccccccccccccceEEEEEEEec
Confidence 2221111100 000000 0111 11 14567999998865 222 3445567899
Q ss_pred CCCeEEEEEEEEEcCCCCCh--HHHHH---HhccccCCchhhHHHHHHHHhhcccCCCCC--------------------
Q 039874 303 APTRCKVVFDYFLDGSLKDD--KAFIE---QSLKDSEQVQMEDIILCEGVQRGLESPAYC-------------------- 357 (382)
Q Consensus 303 s~~~t~v~~~~~~~~~~~~~--~~~~~---~~~~~~~~v~~ED~~i~e~~q~~l~s~~~~-------------------- 357 (382)
++++|+++..+++.+.+++. .+... +.+...+.+..||.++++.+|+++++....
T Consensus 330 gpd~Tev~~~~~v~kda~ee~k~~~~~~~~~~fgpsG~~~~dD~e~~e~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 409 (470)
T 2b1x_A 330 GPDKMEVMSFFLVEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWT 409 (470)
T ss_dssp ETTEEEEEEEEEEETTSCHHHHHHHHHHHHHHSSTTCTTHHHHHHHHHHHHHHTTSTTGGGSEEECCTTTTTCCCCTTCC
T ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhcCcccCcccccHHHHHHHhhhhccCcccccchhhhcCCCccccccCCC
Confidence 99999999888887766532 11111 223446889999999999999999875410
Q ss_pred -CCCC--CCCcChHHHHHHHHHHHHhc
Q 039874 358 -SGRY--APSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 358 -~g~~--~~~~E~~i~~f~~~~~~~l~ 381 (382)
.|.. ....|..+++||++++++|+
T Consensus 410 ~~~~~~~~~~~E~~~r~~~~~w~~~m~ 436 (470)
T 2b1x_A 410 GPGEAYPLDYAEANQRNFLEYWMQLML 436 (470)
T ss_dssp SSSEEESSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCcCcHHHHHHHHHHHHHHc
Confidence 1111 12469999999999999885
No 5
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=1e-54 Score=434.31 Aligned_cols=340 Identities=19% Similarity=0.310 Sum_probs=250.5
Q ss_pred CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCC
Q 039874 30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS 109 (382)
Q Consensus 30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~ 109 (382)
..+||+++|+|+++|++|+++||++.|++||++++|+++|+++++.+++++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 12 ~~~~~~~~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~ 91 (454)
T 2gbw_A 12 NASQSRQVFWDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHAD 91 (454)
T ss_dssp TTEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCS
T ss_pred CCccCHHHcCCHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCcccc
Confidence 35899999999999999999999999999999999998899999999999999999999999999999999999999765
Q ss_pred C-CcceEEccCCCceecCCCceeecccccCCC--CCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhC
Q 039874 110 G-KKSWFVCPYHGWTYGLDGTLLKATRITGIK--DFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLG 186 (382)
Q Consensus 110 ~-~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~--~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~ 186 (382)
. +++.|+||||||+||++|+|+.+|...+.. .|++...+|++++|++++|+|||++++++ ++++++++
T Consensus 92 ~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~---------p~~~~~l~ 162 (454)
T 2gbw_A 92 SGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEA---------PSLEDYLG 162 (454)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTC---------CCHHHHHG
T ss_pred cCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCC---------CCHHHHhh
Confidence 4 567899999999999999999999865432 57788889999999999999999999876 37888888
Q ss_pred Chhhhhhhc-C-CCCCeEEE-EEEEEEeCcccchhhhhc-CCCCCCCCCcCcccccc-CC-cccc--------------c
Q 039874 187 GSSEILSIN-G-IDSSLSYL-CRREYTIECNWKVFCDNY-LDGGYHVPYAHKGLASG-LQ-LDSY--------------S 246 (382)
Q Consensus 187 ~~~~~l~~~-~-~d~~~~~~-~~~~~~~~~NWK~~vEN~-~D~~yH~~~vH~~~~~~-~~-~~~~--------------~ 246 (382)
++...|..+ + ....++.+ ...++.++||||+++||+ +| +||++++|+.++.. .. .... .
T Consensus 163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D-~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (454)
T 2gbw_A 163 EFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGD-GYHVGWTHAAALSQIGGELAGLAGNRADIPFDDLGLQ 241 (454)
T ss_dssp GGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHB-CTTHHHHTHHHHHHHCSGGGGGTTCCTTSCGGGTEEE
T ss_pred hhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCc-cCCCCcCCHhHHhccccccccccccccccccccCceE
Confidence 776666544 1 11346655 356789999999999999 79 89999999665432 11 0000 0
Q ss_pred ccccCceeeeeecCCC-CCCC--cc---c---------cccCCc------c-EEEEecCceeeccCCCeEEEEEEEEcCC
Q 039874 247 TSLYEKVSIQRCESGS-TEGT--DD---T---------HRLGSK------A-IYAFIYPNFMINRYGPWMDTNLVIPLAP 304 (382)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~--~~---~---------~~~g~~------~-~~~~lfPn~~i~~~~~~~~~~~~~P~s~ 304 (382)
......+......... .... +. + +.+|.. . ...++|||+++.... ++++.+.|+++
T Consensus 242 ~~~~~GHg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~iFPN~~~~~~~--~tir~~~P~gp 319 (454)
T 2gbw_A 242 FTTRHGHGFGVIDNAAAGLHIKREGWTKFLEDTRGEVRRKFGPERERLYLGHWNCSIFPNCSFLYGT--NTFKIWHPRGP 319 (454)
T ss_dssp EECTTSCEEEEETTCTTTTCSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHSEEEEEETTTEEEEETT--CEEEEEEESST
T ss_pred EecCCCceeeeccCccccccccCcchhhhHHHHHHHHHHhhccccccccccccccccCCCeEeecCc--eEEEEEEecCC
Confidence 0011122222111110 0000 00 0 112221 1 123599999886532 45667899999
Q ss_pred CeEEEEEEEEEcCCCCCh--HHHHHH---hccccCCchhhHHHHHHHHhhcccCCCC-----------C---C-CCCC--
Q 039874 305 TRCKVVFDYFLDGSLKDD--KAFIEQ---SLKDSEQVQMEDIILCEGVQRGLESPAY-----------C---S-GRYA-- 362 (382)
Q Consensus 305 ~~t~v~~~~~~~~~~~~~--~~~~~~---~~~~~~~v~~ED~~i~e~~q~~l~s~~~-----------~---~-g~~~-- 362 (382)
++|+++..+++++.+++. ..+... .+...+.+..||.+++|++|+|++++.. . . ..+.
T Consensus 320 d~tev~~~~~v~kdapee~k~~~~~~~~~~fgpsG~~~~dD~e~~e~~Q~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 399 (454)
T 2gbw_A 320 HEIEVWTYTIVPRDADPATKSMIQREAIRTFGTAGTLESDDGENMSSATYINRGVITRNGRMNSTMGVGYEGPHPVYPGI 399 (454)
T ss_dssp TCEEEEEEEEEETTSCHHHHHHHHHHHHHHHSTTCTTGGGSHHHHHHHHHGGGSHHHHTSEEECCTTTTSEECCSSSCSE
T ss_pred CeEEEEEEEEecCCCCHHHHHHHHHHHHhccCcccCCCcchhHHHHHHHHHhccCccCCcchhhhhcCCCCCCCCCCCCc
Confidence 999999988887776542 112222 2334578889999999999999875410 0 0 1111
Q ss_pred ----CCcChHHHHHHHHHHHHhc
Q 039874 363 ----PSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 363 ----~~~E~~i~~f~~~~~~~l~ 381 (382)
...|..+++||++++++|+
T Consensus 400 ~~~~~~~E~~~r~~~~~w~~~m~ 422 (454)
T 2gbw_A 400 VGISFIGETSYRGFYRFWKEMID 422 (454)
T ss_dssp EESCSBSSHHHHHHHHHHHHHHH
T ss_pred cCCCCcCchHHHHHHHHHHHHHc
Confidence 2379999999999999885
No 6
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=6.2e-54 Score=427.97 Aligned_cols=342 Identities=20% Similarity=0.326 Sum_probs=250.6
Q ss_pred ccCCCCC-CCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccc
Q 039874 28 EKALTPP-SSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILA 106 (382)
Q Consensus 28 ~~~~~lp-~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~ 106 (382)
....+|| +++|+|+++|++|+++||++.|++||+++||+++|++++++++|++|+|+|+.+|+++||.|+|||||++|+
T Consensus 8 ~~~~~~~~~~~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~ 87 (447)
T 2bmo_A 8 SEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLV 87 (447)
T ss_dssp CGGGCEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCC
T ss_pred ccCCCCCccceeCCHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCcc
Confidence 3445789 999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCC-CcceEEccCCCceecCCCceeecccccC-CC-CCCccCCCCccee-eEEECcEEEEEcCCCccccccccccchhH
Q 039874 107 TGSG-KKSWFVCPYHGWTYGLDGTLLKATRITG-IK-DFNVKEFGLVPLE-VATWGPFVLLNMGKEAVHQEEVDSNVVAN 182 (382)
Q Consensus 107 ~g~~-~~~~i~CpyHgw~f~~~G~~~~~p~~~~-~~-~~~~~~~~l~~~~-v~~~~g~v~v~~~~~~~~~~~~~~~~~~~ 182 (382)
.|.. +++.|+||||||+||++|+|+.+|...+ .+ .|++...+|++|+ |++++|+|||++++++ ++++
T Consensus 88 ~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~---------~~l~ 158 (447)
T 2bmo_A 88 HAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA---------PPLI 158 (447)
T ss_dssp CSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC---------CCHH
T ss_pred ccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC---------CCHH
Confidence 8754 5678999999999999999999998643 22 5777788999997 9999999999999876 3788
Q ss_pred hhhCChhhhhhhc-CCCCCeEEEE-EEEEEeCcccchhhhhc-CCCCCCCCCcCcccccc-CCc-ccc--------c---
Q 039874 183 EWLGGSSEILSIN-GIDSSLSYLC-RREYTIECNWKVFCDNY-LDGGYHVPYAHKGLASG-LQL-DSY--------S--- 246 (382)
Q Consensus 183 e~l~~~~~~l~~~-~~d~~~~~~~-~~~~~~~~NWK~~vEN~-~D~~yH~~~vH~~~~~~-~~~-~~~--------~--- 246 (382)
++++++...+..+ +.+..+.+.+ ..++.++||||+++||+ +| +||++++|+++++. ... ... .
T Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D-~yH~~~~H~~~l~~~~~~~~~~~g~~~~~~~~~~ 237 (447)
T 2bmo_A 159 DYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGD-GYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAG 237 (447)
T ss_dssp HHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHB-CTTHHHHTHHHHHHHCCGGGGGGGGCSCCTTCSC
T ss_pred HHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCC-CCCCcccchhhhhccccccccccccccccccccc
Confidence 8999877666544 2123566653 56789999999999999 79 89999999765432 110 000 0
Q ss_pred --ccccCceeeeeecCCC-CCCC----cc---c---------cccCCc-----cEEE--EecCceeeccCCCeEEEEEEE
Q 039874 247 --TSLYEKVSIQRCESGS-TEGT----DD---T---------HRLGSK-----AIYA--FIYPNFMINRYGPWMDTNLVI 300 (382)
Q Consensus 247 --~~~~~~~~~~~~~~~~-~~~~----~~---~---------~~~g~~-----~~~~--~lfPn~~i~~~~~~~~~~~~~ 300 (382)
......+......... .... +. + +.+|.. .... ++|||+++.... .+++.+.
T Consensus 238 ~~~~~~~GHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~n~~iFPN~~~~~~~--~t~rv~~ 315 (447)
T 2bmo_A 238 LQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGS--AAFRVWN 315 (447)
T ss_dssp EEEECTTSCEEEEETTCTTTTCCGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHTSEEEEEETTTEEEETTT--TEEEEEE
T ss_pred eeEecCCCccccccccccccccccccCcchhhhHHHHHHHHHHhhcccccchhhhhccceeCCceeeccCc--eEEEEEE
Confidence 0011112222111100 0000 00 0 112211 1122 799999886533 3566679
Q ss_pred EcCCCeEEEEEEEEEcCCCCCh--HHHHHH---hccccCCchhhHHHHHHHHhhcccCCCC-------CC----------
Q 039874 301 PLAPTRCKVVFDYFLDGSLKDD--KAFIEQ---SLKDSEQVQMEDIILCEGVQRGLESPAY-------CS---------- 358 (382)
Q Consensus 301 P~s~~~t~v~~~~~~~~~~~~~--~~~~~~---~~~~~~~v~~ED~~i~e~~q~~l~s~~~-------~~---------- 358 (382)
|+++++|+++..+++++++++. ..+... .+...+.+..||.+++|++|+|+++... +.
T Consensus 316 P~gpd~TeV~~~~~v~kda~e~~k~~~~~~~~~~fgpsG~~~~dD~e~~e~~Q~g~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (447)
T 2bmo_A 316 PIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDE 395 (447)
T ss_dssp EEETTEEEEEEEEEEETTSCHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHTTSTTGGGSEEECCTTTTCCEESCS
T ss_pred cCCCCeEEEEEEEEecCCCCHHHHHHHHHHHHhccCCcccCccchHHHHHHHHHHhccCccCCcchhhhcCCCCCcCcCC
Confidence 9999999999988887776542 112221 2233467788999999999999986521 00
Q ss_pred ---CCC--CCCcChHHHHHHHHHHHHhc
Q 039874 359 ---GRY--APSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 359 ---g~~--~~~~E~~i~~f~~~~~~~l~ 381 (382)
|.. ....|..+++|++++++.|+
T Consensus 396 ~~~g~~~~~~~~E~~~r~~~~~w~~~m~ 423 (447)
T 2bmo_A 396 CYPGVVGKSAIGETSYRGFYRAYQAHIS 423 (447)
T ss_dssp SSCSEEESCSBSSHHHHHHHHHHHHHHT
T ss_pred CCCCcccCcccCchHHHHHHHHHHHHHc
Confidence 110 01369999999999999885
No 7
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=3e-53 Score=423.89 Aligned_cols=340 Identities=22% Similarity=0.334 Sum_probs=248.3
Q ss_pred CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCC
Q 039874 30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS 109 (382)
Q Consensus 30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~ 109 (382)
..+||+++|+|+++|++|+++||++.|++||+++||+++|+++++.+++++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 30 ~~~~p~~~y~d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~ 109 (460)
T 1uli_A 30 TGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRAD 109 (460)
T ss_dssp TTEECGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSS
T ss_pred CCcCCHHHcCCHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCcccc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999765
Q ss_pred C-CcceEEccCCCceecCCCceeecccccC-CCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCC
Q 039874 110 G-KKSWFVCPYHGWTYGLDGTLLKATRITG-IKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGG 187 (382)
Q Consensus 110 ~-~~~~i~CpyHgw~f~~~G~~~~~p~~~~-~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~ 187 (382)
. +++.|+||||||+||++|+|+.+|...+ .+.|++...+|++++|++++|+|||++++++ +++.+++++
T Consensus 110 ~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~---------p~l~~~l~~ 180 (460)
T 1uli_A 110 GGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADA---------PDLDTYLGE 180 (460)
T ss_dssp EEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTS---------CCHHHHHTT
T ss_pred CCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCC---------CCHHHHhcc
Confidence 4 5578999999999999999999998643 3467888899999999999999999999876 478889998
Q ss_pred hhhhhhhc-C-CCCCeEEE-EEEEEEeCcccchhhhhc-CCCCCCC-CCcCccccc-cC--Cc--------cccc--ccc
Q 039874 188 SSEILSIN-G-IDSSLSYL-CRREYTIECNWKVFCDNY-LDGGYHV-PYAHKGLAS-GL--QL--------DSYS--TSL 249 (382)
Q Consensus 188 ~~~~l~~~-~-~d~~~~~~-~~~~~~~~~NWK~~vEN~-~D~~yH~-~~vH~~~~~-~~--~~--------~~~~--~~~ 249 (382)
+...|..+ + ....+... ...++.++||||+++||+ +| +||+ .++|...+. .. .. ..+. ...
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D-~yH~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (460)
T 1uli_A 181 AKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSD-MYHAGTTSHLSGILAGLPDGVDLSELAPPTEGIQYRAT 259 (460)
T ss_dssp HHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHB-HHHHHTTTTHHHHHHTCC-----------CCEEEEECS
T ss_pred hHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCC-CCCchhhhhhhccccCccccccccccccccccceeEec
Confidence 77666554 1 11234442 445678999999999999 79 8999 699985431 10 00 0000 011
Q ss_pred cCceeeeee-cCCC----------CCC-------CccccccCCc-------cEEEEecCceeeccCCCeEEEEEEEEcCC
Q 039874 250 YEKVSIQRC-ESGS----------TEG-------TDDTHRLGSK-------AIYAFIYPNFMINRYGPWMDTNLVIPLAP 304 (382)
Q Consensus 250 ~~~~~~~~~-~~~~----------~~~-------~~~~~~~g~~-------~~~~~lfPn~~i~~~~~~~~~~~~~P~s~ 304 (382)
...++.... .... ... +...+.+|.. ....++|||+++.... ..++.+.|+++
T Consensus 260 ~~ghg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~IFPN~~~~~~~--~t~rv~~P~gp 337 (460)
T 1uli_A 260 WGGHGSGFYIGDPNLLLAIMGPKVTEYWTQGPAAEKASERLGSTERGQQLMAQHMTIFPTCSFLPGI--NTIRAWHPRGP 337 (460)
T ss_dssp SSSCEEEEEESCCHHHHHHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHSEEEEEEEETTTEEECTTT--CEEEEEEECST
T ss_pred CCCceeeeeccCCcccccccCcchhhhhhhhhhhhhhhhhhccccccccccccceeECCcEEcccCc--ceEEEEEecCC
Confidence 112222210 0000 000 0000122221 1335799999887533 34566799999
Q ss_pred CeEEEEEEEEEcCCCCCh--HHHHHH---hccccCCchhhHHHHHHHHhhcccCCCCC-------CC-------------
Q 039874 305 TRCKVVFDYFLDGSLKDD--KAFIEQ---SLKDSEQVQMEDIILCEGVQRGLESPAYC-------SG------------- 359 (382)
Q Consensus 305 ~~t~v~~~~~~~~~~~~~--~~~~~~---~~~~~~~v~~ED~~i~e~~q~~l~s~~~~-------~g------------- 359 (382)
++|+++..+++++.+++. .++... .+...+.+..||.+++|++|+|+++.... .|
T Consensus 338 dkTev~~~~~v~kdape~~k~~~~~~~~~~fgpsG~v~~dD~e~~e~~Q~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 417 (460)
T 1uli_A 338 NEIEVWAFTVVDADAPEEMKEEYRQQTLRTFSAGGVFEQDDGENWVEIQQVLRGHKARSRPFNAEMGLGQTDSDNPDYPG 417 (460)
T ss_dssp TCEEEEEEEEEETTSCHHHHHHHHHHHHHHSSTTSTTHHHHHHHHHHHHHHTTSTGGGSSCEECCTTTTCCBSCCSSSCS
T ss_pred CeEEEEEEEeccCCCChHHHHHHHHHHhhccCCcccCcHhHHHHHHHHHHHhccCCCCCcchhhhcCCCCCcccCCCCCc
Confidence 999999988887776542 111122 22335778889999999999999865211 11
Q ss_pred C-CCCCcChHHHHHHHHHHHHhc
Q 039874 360 R-YAPSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 360 ~-~~~~~E~~i~~f~~~~~~~l~ 381 (382)
. .....|..++.|++.++++|+
T Consensus 418 ~~~~~~~E~~~r~~~~~w~~~m~ 440 (460)
T 1uli_A 418 TISYVYSEEAARGLYTQWVRMMT 440 (460)
T ss_dssp EEEESBCSHHHHHHHHHHHHHHT
T ss_pred ccCCCCCchHHHHHHHHHHHHHc
Confidence 1 012469999999999999985
No 8
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1.6e-50 Score=402.69 Aligned_cols=340 Identities=15% Similarity=0.128 Sum_probs=238.2
Q ss_pred ccCCCCCCCccCCHHHHH--HHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCcc
Q 039874 28 EKALTPPSSWYTDPSFLA--LELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASIL 105 (382)
Q Consensus 28 ~~~~~lp~~~Y~~~~~~~--~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L 105 (382)
....+||.+ +|+++|+ +|++.+|++.|++||++++|++ |++++++++|++|+|+| .+|+++||.|+|||||++|
T Consensus 16 ~~~~~~p~~--~~~~~~~~~~e~~~if~~~W~~v~~~~el~~-g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L 91 (446)
T 1z01_A 16 ISDARANNA--KTQSQYQPYKDAAWGFINHWYPALFTHELEE-DQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRL 91 (446)
T ss_dssp CCTTSSSCH--HHHGGGHHHHHCTTCBCSEEEEEEEGGGSCB-TCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCG
T ss_pred CccccCCcc--cCHHHhhhhhhhhhhhhhceEEEEEHHHCCC-CCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCcCCC
Confidence 456788988 9999999 9999999999999999999996 99999999999999999 6999999999999999999
Q ss_pred ccCC--CCcceEEccCCCceecC-CCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhH
Q 039874 106 ATGS--GKKSWFVCPYHGWTYGL-DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVAN 182 (382)
Q Consensus 106 ~~g~--~~~~~i~CpyHgw~f~~-~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~ 182 (382)
+.|. ++++.|+||||||+||+ +|+|+.+|..+. .+.+...+|++|+|++++|+|||++++++.|.++ .+++.
T Consensus 92 ~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~--~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~---~~~l~ 166 (446)
T 1z01_A 92 SEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPE--DKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDED---VPPLA 166 (446)
T ss_dssp GGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTT--CTTTTSCBCCEECEEEETTEEEEEECCTTCCGGG---CCCGG
T ss_pred CCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCcc--ccCcccCCCcEEEEEEECCEEEEEeCCccccccC---CCChh
Confidence 9986 46789999999999998 999999987543 2334567899999999999999999875311001 13566
Q ss_pred hhhC-Chhhhhhhc---------CC-CCCeEEEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCCc---ccccc-
Q 039874 183 EWLG-GSSEILSIN---------GI-DSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL---DSYST- 247 (382)
Q Consensus 183 e~l~-~~~~~l~~~---------~~-d~~~~~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~---~~~~~- 247 (382)
+.++ .+.+.++.+ .+ +..+... ...+.++||||+++||++| +||+ ++|+++++.... ..+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D-~~H~-~vH~~~~~~~~~~~~~~~~~~ 243 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFD-NAHI-LVHKDNTIVHAMDWVLPLGLL 243 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTC-TTGG-GGGTTCHHHHHTTCCCCSEEE
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccc-hhhh-hhhhhhhhccccccccccccc
Confidence 6665 333333322 11 2456554 3456899999999999999 8999 999987642111 01100
Q ss_pred --------cc---cCceeeeeecCCCCCCCcccc--------ccCC--ccEEEEecCceeecc-C--CCeEEEEEEEEcC
Q 039874 248 --------SL---YEKVSIQRCESGSTEGTDDTH--------RLGS--KAIYAFIYPNFMINR-Y--GPWMDTNLVIPLA 303 (382)
Q Consensus 248 --------~~---~~~~~~~~~~~~~~~~~~~~~--------~~g~--~~~~~~lfPn~~i~~-~--~~~~~~~~~~P~s 303 (382)
.. .+...+....... ...+.++ ..|. .....++|||+++.. + ...+.+..++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~~p~~~~~~~~~~~Pi~ 322 (446)
T 1z01_A 244 PTSDDCIAVVEDDDGPKGMMQWLFTD-KWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENWPEEHVVQYEWYVPIT 322 (446)
T ss_dssp ECSTTSEEEECCSSSCCEEEECTTST-TEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEETCSSTTCEEEEEEEESS
T ss_pred ccCCCceeEEEecCCCCEEEEEecCc-cccchhhhhhhccccccCCceEEEeeeecCceEEEeccCCCCeEEEEEEEECC
Confidence 00 0011111110000 0000000 1111 133457899998764 2 2456788999999
Q ss_pred CCeEEEEEEEEEcCCCCC--hHHHHHHhc----c-ccCCchhhHHHHHHHHhhcccCCCCCCCCCCCCcChHHHHHHHHH
Q 039874 304 PTRCKVVFDYFLDGSLKD--DKAFIEQSL----K-DSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLL 376 (382)
Q Consensus 304 ~~~t~v~~~~~~~~~~~~--~~~~~~~~~----~-~~~~v~~ED~~i~e~~q~~l~s~~~~~g~~~~~~E~~i~~f~~~~ 376 (382)
+++|++++.+ +++...+ ...+..++. . ....|..||.+++|++|+++..+..-.+.++..+|.++.+||+|+
T Consensus 323 ~~~t~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l~~~D~~i~~~Rr~l 401 (446)
T 1z01_A 323 DDTHEYWEIL-VRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVATDISPITWRKLA 401 (446)
T ss_dssp SSEEEEEEEE-EEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHH
T ss_pred CCcEEEEEEE-ecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccCchhhHHHHHHHHHH
Confidence 9999987654 4433321 111222111 1 134577999999999999987754312456768999999999999
Q ss_pred HHHhc
Q 039874 377 HCNLT 381 (382)
Q Consensus 377 ~~~l~ 381 (382)
++++.
T Consensus 402 ~~~~~ 406 (446)
T 1z01_A 402 SRWNR 406 (446)
T ss_dssp HHHCS
T ss_pred HHHHh
Confidence 99875
No 9
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=2.1e-49 Score=382.77 Aligned_cols=309 Identities=16% Similarity=0.187 Sum_probs=223.3
Q ss_pred hccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecCCCc
Q 039874 50 RVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGT 129 (382)
Q Consensus 50 ~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~~G~ 129 (382)
.++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||++|+
T Consensus 3 ~~~~~~W~~v~~~~el--~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 3 TFVRNAWYVAALPEEL--SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCSSCEEEECGGGC--CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred cccccccEEEEEHHHC--CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 5788999999999999 58999999999999999999999999999999999999999988899999999999999999
Q ss_pred eeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCChhhhhhhcCCCCCeEEEEEEEE
Q 039874 130 LLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREY 209 (382)
Q Consensus 130 ~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~~~~l~~~~~d~~~~~~~~~~~ 209 (382)
|+.+|... ..+ +...+|++|+|.+++|+|||++++++.+++ .++.++. .+. . +++... ...+
T Consensus 81 ~~~~P~~~--~~~-~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~---------~~~p~~~-~~~---~-~~~~~~-~~~~ 142 (349)
T 3gke_A 81 CVHNPHGN--GAR-PASLNVRSFPVVERDALIWIWPGDPALADP---------GAIPDFG-CRV---D-PAYRTV-GGYG 142 (349)
T ss_dssp EEECCSTT--CCC-CGGGCCCBCCEEEETTEEEECCSCGGGCCG---------GGSCCCG-GGG---C-TTSEEE-EEEE
T ss_pred ccccCccc--ccc-ccccccceeeEEEECCEEEEeeCCCCCCcc---------cccCCcc-ccC---C-CCCEEE-eEEE
Confidence 99999621 122 235689999999999999999998763221 1222221 111 1 355554 4567
Q ss_pred EeCcccchhhhhcCCCCCCCCCcCccccccCCcc--cccccccC-ceeeeeecCCCCCCCccccc-c---C----CccEE
Q 039874 210 TIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLD--SYSTSLYE-KVSIQRCESGSTEGTDDTHR-L---G----SKAIY 278 (382)
Q Consensus 210 ~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~---g----~~~~~ 278 (382)
+++||||+++||++| +||++++|+++++..+.. .+.++..+ .+...+..... ..++.+.. + + ....+
T Consensus 143 ~~~~nwk~~~EN~~D-~~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~ 220 (349)
T 3gke_A 143 HVDCNYKLLVDNLMD-LGHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGG-TPSVLMAKFLRGANTPVDAWNDI 220 (349)
T ss_dssp EESSCHHHHHHHHHC-GGGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEE-CCCHHHHHHTTTCCSCEEEEEEE
T ss_pred EEecCHHhHHHhccc-cccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCC-CCChHHHhhcccCCCCceeEEEE
Confidence 999999999999999 899999999988754322 11222211 12222111000 00111110 1 1 12456
Q ss_pred EEecCceeeccCC----------C--eEEEEEEEEcCCCeEEEEEEEEEcCCCCChHHHHHHhccccCCch-hhHHHHHH
Q 039874 279 AFIYPNFMINRYG----------P--WMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQ-MEDIILCE 345 (382)
Q Consensus 279 ~~lfPn~~i~~~~----------~--~~~~~~~~P~s~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~ED~~i~e 345 (382)
.|.+|++++...+ . .++++.++|+++++|++++.++. ....+++.+.+.+..+..+|+ .||..|+|
T Consensus 221 ~~~~P~~~~~~~~~~~~g~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~r-n~~~~d~~~~~~~~~~~~~if~~ED~~ile 299 (349)
T 3gke_A 221 RWNKVSAMLNFIAVAPEGTPKEQSIHSRGTHILTPETEASCHYFFGSSR-NFGIDDPEMDGVLRSWQAQALVKEDKVVVE 299 (349)
T ss_dssp EEETTTEEEEEEEEEETTSCGGGSEEEEEEEEEEEEETTEEEEEEEEEE-SSSTTCHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred EEECCEEEEEEEecccCCCCCCCceEEEEEEEEecCCCCeEEEEEEEEe-cCccCchhhhHHHHHHHhhhhhhhhHHHHH
Confidence 7899998654221 1 35678899999999999886554 444444455455556667788 99999999
Q ss_pred HHhhcccCC-CCCCCCCCCCcChHHHHHHHHHHHHhc
Q 039874 346 GVQRGLESP-AYCSGRYAPSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 346 ~~q~~l~s~-~~~~g~~~~~~E~~i~~f~~~~~~~l~ 381 (382)
+||+++... ....++++...|++..+||+|+++++.
T Consensus 300 ~Qq~~l~~~~~~~~~~~~~~~D~~~v~~Rr~l~~l~~ 336 (349)
T 3gke_A 300 AIERRRAYVEANGIRPAMLSCDEAAVRVSREIEKLEQ 336 (349)
T ss_dssp HHHHTHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCccccccccccccHHHHHHHHHHHHHHH
Confidence 999998752 122345667899999999999999874
No 10
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.7e-49 Score=384.45 Aligned_cols=302 Identities=15% Similarity=0.199 Sum_probs=215.8
Q ss_pred hccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecCCCc
Q 039874 50 RVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGT 129 (382)
Q Consensus 50 ~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~~G~ 129 (382)
.+|.+.|++||++++|+ +|++++++++|++|+|+|+.+|+++||.|+|||||++|+.|.++++.|+||||||+||++|+
T Consensus 20 ~~f~~~W~~v~~~~el~-~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 20 TRYARGWHCLGVAKDYL-EGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp SSCCSEEEEEEEGGGGC-SSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred hhhhcceEEEEEHHHCC-CCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 46999999999999999 59999999999999999999999999999999999999999988889999999999999999
Q ss_pred eeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCChhhhhhhcCCCCCeEEEEEEEE
Q 039874 130 LLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREY 209 (382)
Q Consensus 130 ~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~~~~l~~~~~d~~~~~~~~~~~ 209 (382)
|+.+|....++ ...+|++|+|++++|+|||++++++.+ +..+.+.+ .+..++. ..+.......+
T Consensus 99 ~~~~P~~~~~~----~~~~l~~~~v~~~~G~v~v~~~~~~~~--------~~~~~~~p---~~~~~~~-~~~~~~~~~~~ 162 (386)
T 2zyl_A 99 CKLVPYARRTP----RMARTRSWTTDVRSGLLFVWHDHEGNP--------PDPAVRIP---EIPEAAS-DEWTDWRWNRI 162 (386)
T ss_dssp EEECTTCSSCC----TTCBCCEECEEEETTEEEEEECTTCCC--------CCGGGCCC---CCGGGGC-TTBCCCEEEEE
T ss_pred ccccCcccccC----cccCcceEeEEEECCEEEEEECCccCC--------CcccccCc---ccccccC-CCceEEEEEEE
Confidence 99999865432 346799999999999999999876421 11111111 1122222 23333344567
Q ss_pred EeC-cccchhhhhcCCCCCCCCCcCccccccCCcccccccccCceeeeeecC-CCCCCCccccccC---CccEEEEecCc
Q 039874 210 TIE-CNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCES-GSTEGTDDTHRLG---SKAIYAFIYPN 284 (382)
Q Consensus 210 ~~~-~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g---~~~~~~~lfPn 284 (382)
.++ ||||+++||++| +||++++|+++..... ....+....+.... +...........| ......+++||
T Consensus 163 ~~~~~nwk~~~EN~~D-~~H~~~~H~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~ 236 (386)
T 2zyl_A 163 LIEGSNCRDIIDNVTD-MAHFFYIHFGLPTYFK-----NVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPS 236 (386)
T ss_dssp EEESSCGGGGGGGGGC-STHHHHTTCEEEEEEE-----EEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSS
T ss_pred EEcCcCHHhHhhhccc-ccchhhhCcCcccccc-----ccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCe
Confidence 889 999999999999 8999999998754321 11111111111100 0000000000111 12345688999
Q ss_pred eeeccCC--------CeEEEEEEEEcCCCeEEEEEEEEEcCCC-CCh---HHHHHHhccccCCchhhHHHHHHHHhhccc
Q 039874 285 FMINRYG--------PWMDTNLVIPLAPTRCKVVFDYFLDGSL-KDD---KAFIEQSLKDSEQVQMEDIILCEGVQRGLE 352 (382)
Q Consensus 285 ~~i~~~~--------~~~~~~~~~P~s~~~t~v~~~~~~~~~~-~~~---~~~~~~~~~~~~~v~~ED~~i~e~~q~~l~ 352 (382)
+++..++ .++.+..++|+++++|++++.+++.+.. .++ ....+.+...+.+++.||.+|++++|+.
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~-- 314 (386)
T 2zyl_A 237 FMINWLHNRYGNYKSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRI-- 314 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred EEEEEeeeccCCcceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccc--
Confidence 8876421 1345677899999999999988877642 221 2333445556678899999999997643
Q ss_pred CCCCCCCCCCCCcChHHHHHHHHHHHHhc
Q 039874 353 SPAYCSGRYAPSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 353 s~~~~~g~~~~~~E~~i~~f~~~~~~~l~ 381 (382)
..++++..|.++.+||+|+++++.
T Consensus 315 -----~~p~~~~~D~~~~~fRrw~~~~~~ 338 (386)
T 2zyl_A 315 -----DNPLLVEEDGAVYQLRRWYEQFYV 338 (386)
T ss_dssp -----SSCCCCGGGCSHHHHHHHHHGGGS
T ss_pred -----cCCccCcccHHHHHHHHHHHHhCC
Confidence 235676889999999999999875
No 11
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=5.9e-46 Score=364.49 Aligned_cols=312 Identities=15% Similarity=0.170 Sum_probs=214.7
Q ss_pred HHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCCC--CcceEEccCCCc
Q 039874 45 ALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSG--KKSWFVCPYHGW 122 (382)
Q Consensus 45 ~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~--~~~~i~CpyHgw 122 (382)
..|++.+|++.|++||+++||++ |++++++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+ .++.|+||||||
T Consensus 18 ~~e~~~~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw 95 (392)
T 2de6_A 18 YVDAKLGFRNHWYPVMFSKEINE-GEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAW 95 (392)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCB-TCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCE
T ss_pred cchhhhhhccccEEEEEHHHCCC-CCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCC
Confidence 46778999999999999999996 999999999999999995 99999999999999999998864 468999999999
Q ss_pred eecC-CCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCChhhhhhhcCCCCCe
Q 039874 123 TYGL-DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSL 201 (382)
Q Consensus 123 ~f~~-~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~~~~l~~~~~d~~~ 201 (382)
+||+ +|+|+.+|..+.. ..+...+|++|+|++++|+|||+++++.+ +++.+.+++ . +. ++++
T Consensus 96 ~f~~~~G~~~~~p~~p~~--~~~~~~~l~~~~v~~~~G~v~v~~~~~~~--------~~l~~~l~~---~---~~-~~~~ 158 (392)
T 2de6_A 96 TYRWEDGVLCDILTNPTS--AQIGRQKLKTYPVQEAKGCVFIYLGDGDP--------PPLARDTPP---N---FL-DDDM 158 (392)
T ss_dssp EEETTTCBEEEETTCTTC--TTTTSCBCCBCCEEEETTEEEEEESSSSC--------CCGGGGSCT---T---TT-CTTE
T ss_pred EEcCCCCccccccCCccc--cccccCCCceEeEEEECCEEEEEeCCCCC--------CChhHhccc---c---cc-CCCe
Confidence 9998 9999999875542 23456789999999999999999976432 244444431 0 11 2355
Q ss_pred EEEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCCcc----------------ccccccc--CceeeeeecCCCC
Q 039874 202 SYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLD----------------SYSTSLY--EKVSIQRCESGST 263 (382)
Q Consensus 202 ~~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~~~~ 263 (382)
... ...+.++||||+++||++| +||+ ++|+++++..... .+..... +...+........
T Consensus 159 ~~~-~~~~~~~~nwk~~~EN~~D-~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~ 235 (392)
T 2de6_A 159 EIL-GKNQIIKSNWRLAVENGFD-PSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHG 235 (392)
T ss_dssp EEE-EEEEEESSCHHHHHHHHHC-GGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTC
T ss_pred EEE-EEEEEEecChHhhhHhcch-hhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCcc
Confidence 554 3567899999999999999 8999 9999876421100 0000000 0011111100000
Q ss_pred CCCcccc-----------ccCC---ccEEEEecCceeecc-CC--CeEEEEEEEEcCCCeEEEEEEEEEcCCCCCh--HH
Q 039874 264 EGTDDTH-----------RLGS---KAIYAFIYPNFMINR-YG--PWMDTNLVIPLAPTRCKVVFDYFLDGSLKDD--KA 324 (382)
Q Consensus 264 ~~~~~~~-----------~~g~---~~~~~~lfPn~~i~~-~~--~~~~~~~~~P~s~~~t~v~~~~~~~~~~~~~--~~ 324 (382)
.+.+. ..|. .....+.+||+++.. ++ ...++..++|+++++|++++ ++.++...+. ..
T Consensus 236 --~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~p~~~~~~~~~~~Pi~~~~t~~~~-~~~~~~~~~~~~~~ 312 (392)
T 2de6_A 236 --VPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQ-TLGKPCANDEERKK 312 (392)
T ss_dssp --EEECEEEETTEEEEECEECSBCCCCEEEEETTTEEEEESCSSTTCEEEEEEEEEETTEEEEEE-EEEEECSSHHHHHH
T ss_pred --ccccccccccceeeccccCCcccceeEEEecccceeccccCCCCEEEEEEEeecCCCcEEEEE-EEecCCCCHHHHHH
Confidence 00000 0111 122345689987543 32 34566789999999999766 4444333211 11
Q ss_pred HHHHhc-----cccCCchhhHHHHHHHHhhcccCCCCCCCCCCCCcChHHHHHHHHHHHHhc
Q 039874 325 FIEQSL-----KDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLT 381 (382)
Q Consensus 325 ~~~~~~-----~~~~~v~~ED~~i~e~~q~~l~s~~~~~g~~~~~~E~~i~~f~~~~~~~l~ 381 (382)
+...+. .....|+.||.+|+|+||+++..+....+.++..+|.++.+||+|+++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~ 374 (392)
T 2de6_A 313 YEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQ 374 (392)
T ss_dssp HHHHHHHTHHHHTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhh
Confidence 211111 123567899999999999987654321355677899999999999999864
No 12
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=2.5e-41 Score=324.08 Aligned_cols=310 Identities=15% Similarity=0.215 Sum_probs=213.0
Q ss_pred HHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCC--CCcceEEccCCCce
Q 039874 46 LELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS--GKKSWFVCPYHGWT 123 (382)
Q Consensus 46 ~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~--~~~~~i~CpyHgw~ 123 (382)
+|++.+|++.|++||+++||++ |++++++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+
T Consensus 22 lE~e~if~~~W~~V~~~~ELp~-G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~ 99 (389)
T 3gkq_A 22 IDAKLGFRNHWYPVRLSAEVAE-ASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWT 99 (389)
T ss_dssp HHCTTCBSSEEEEEEEGGGSCB-TCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEE
T ss_pred hhhhhhhcCccEEEEEHHHCCC-CCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCE
Confidence 6889999999999999999995 99999999999999999 69999999999999999999886 56789999999999
Q ss_pred ecC-CCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCChhhhhhhcCCCCCeE
Q 039874 124 YGL-DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202 (382)
Q Consensus 124 f~~-~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~~~~l~~~~~d~~~~ 202 (382)
||+ +|+|+.+|..++. +.+...+|++|+|++++|+|||+++++++ +++.+++++. +. +.++.
T Consensus 100 Fdl~dG~cv~iP~~P~~--~~~~~~~L~~ypV~e~~G~VfV~lgd~~~--------ppL~e~l~~~---~~----~~~~~ 162 (389)
T 3gkq_A 100 YRWDNGKLVDILTNPTS--VQIGRHALKTYPVREEKGLVFLFVGDQEP--------HDLAEDVPPG---FL----DADLA 162 (389)
T ss_dssp EETTTCBEEEETTCTTC--TTTTSCBCCBCCEEEETTEEEEEESSSCC--------CCGGGGSCTT---TT----CTTEE
T ss_pred EECCCCCeecccCCccc--ccccccCCcEEEEEEECCeEEEecCCCCC--------CCchhhcchh---cc----CCceE
Confidence 999 8999999976542 23456789999999999999999975432 3555555431 11 24565
Q ss_pred EEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCC--c-ccccccccCceeee-e-ecCC-CCC----CCcc----
Q 039874 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQ--L-DSYSTSLYEKVSIQ-R-CESG-STE----GTDD---- 268 (382)
Q Consensus 203 ~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~--~-~~~~~~~~~~~~~~-~-~~~~-~~~----~~~~---- 268 (382)
..+ ..+.++||||+++||++| +||+ ++|+++++..+ . ..+.....+...+. . ...+ ... ....
T Consensus 163 ~~~-~~~~i~~NWK~~~EN~lD-~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~ 239 (389)
T 3gkq_A 163 VHG-QHRVVDANWRMGVENGFD-AGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPI 239 (389)
T ss_dssp EEE-EEEEESSCHHHHHHHHTC-SGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEE
T ss_pred EEe-EEEEEecCchhhHHhcch-hchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhcccccc
Confidence 544 467899999999999999 8999 99999865211 0 00110000000000 0 0000 000 0000
Q ss_pred -------c---c-ccCC---ccEEEEecCceeecc-C--CCeEEEEEEEEcCCCeEEEEEEEEEcCCCCCh--HHHHHHh
Q 039874 269 -------T---H-RLGS---KAIYAFIYPNFMINR-Y--GPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDD--KAFIEQS 329 (382)
Q Consensus 269 -------~---~-~~g~---~~~~~~lfPn~~i~~-~--~~~~~~~~~~P~s~~~t~v~~~~~~~~~~~~~--~~~~~~~ 329 (382)
. . ..|. .....+.+||+.... + +..++.-+.+|+++++++.+- .+......+. .+|..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~s~~lP~v~~v~~~~~~~~~~~~~~vpi~~~~~~y~~-~~~~~~~~~~~~~~~~~~~ 318 (389)
T 3gkq_A 240 FEATIEGQPAIQGHMGSKMVAISISVWLPGVLKVDPFPDPTLTQFEWYVPIDEGHHLYLQ-MLGRRVGSEEEARSFEAEF 318 (389)
T ss_dssp SEEEETTEEEEECBCCSBCCCCEEEEETTTEEEEESCSSTTCEEEEEEEEEETTEEEEEE-EEEEECSSHHHHHHHHHHH
T ss_pred ccccccCcccccCCCCCcccceeEEEEecCeeEeccCCCCCeEEEEEEeeccCCeEEEEE-EEEEEcCCHHHHHHHHHHH
Confidence 0 0 0111 123457899998764 2 345566677999999998654 4454443321 2332222
Q ss_pred ---c-c-ccCCchhhHHHHHHHHhhcccCCC-CCCCCCCCCcChHHHHHHHHHHHH
Q 039874 330 ---L-K-DSEQVQMEDIILCEGVQRGLESPA-YCSGRYAPSVEQTMYHFHSLLHCN 379 (382)
Q Consensus 330 ---~-~-~~~~v~~ED~~i~e~~q~~l~s~~-~~~g~~~~~~E~~i~~f~~~~~~~ 379 (382)
+ . ....++.+|...-|++|.-...+. +..-+|- ..|..|..+++...+.
T Consensus 319 ~~~~~~~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~-~~d~~~~~wr~~~~~~ 373 (389)
T 3gkq_A 319 REKWVELALNGFNDDDILARRSMEPFYADDRGWREEVLF-ESDRAIIEWRRLASQY 373 (389)
T ss_dssp HHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHHCCCC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHhhccCCCCChhhcc-CcchhHHHHHHHHHHh
Confidence 1 1 346788999999999997655532 2111233 5699999999988764
No 13
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=6.8e-41 Score=322.02 Aligned_cols=310 Identities=18% Similarity=0.276 Sum_probs=212.8
Q ss_pred HHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCC--CCcceEEccCCCce
Q 039874 46 LELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGS--GKKSWFVCPYHGWT 123 (382)
Q Consensus 46 ~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~--~~~~~i~CpyHgw~ 123 (382)
+|++.+|++.|++||+++||++ |+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+
T Consensus 25 LE~~~if~~~W~~V~~~~ELp~-G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~ 102 (394)
T 3gcf_A 25 LEATLGFDNHWHPAAFDHELAE-GEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWT 102 (394)
T ss_dssp HHCTTCEESEEEEEEEGGGCCB-TCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEE
T ss_pred hhhhhhhcccCEEEEEHHHCCC-CCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcE
Confidence 6778999999999999999995 99999999999999999 69999999999999999999886 56789999999999
Q ss_pred ecC-CCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCChhhhhhhcCCCCCeE
Q 039874 124 YGL-DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLS 202 (382)
Q Consensus 124 f~~-~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~~~~l~~~~~d~~~~ 202 (382)
||+ +|+|+.+|..++. +.....+|++|+|++++|+|||++++++. +++.+++++. + .+.++.
T Consensus 103 Fdl~dG~cv~iP~~p~~--~~~~~~~L~~ypV~e~~G~VfV~lgd~~~--------ppL~e~L~~~---~----~d~~~~ 165 (394)
T 3gcf_A 103 YDLDDGRLVDVLTSPGS--PVIGKIGIKVYPVQVAQGVVFVFIGDEEP--------HALSEDLPPG---F----LDEDTH 165 (394)
T ss_dssp EETTTCBEEEETTSTTC--TTTTSCBCCEECEEEETTEEEEEESSSCC--------CCGGGGSCTT---T----TCTTEE
T ss_pred EECCCCceeccCCCccc--ccccccCceEEEEEEECCcEEEecCCCCC--------CCchhhcchh---h----cCCceE
Confidence 999 8999999976542 23445789999999999999999975442 2555555431 1 124565
Q ss_pred EEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCC---cccccccccCceeeeeecCCCCCC--------------
Q 039874 203 YLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQ---LDSYSTSLYEKVSIQRCESGSTEG-------------- 265 (382)
Q Consensus 203 ~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------------- 265 (382)
..+ ..+.++||||+++||++| +||+ ++|+++++..+ ...+.....+...+.....+.+..
T Consensus 166 ~~~-~~~~i~~NWK~~~EN~lD-~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~pv~~ 242 (394)
T 3gcf_A 166 LLG-IRRTVQSNWRLGVENGFD-TTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVYDENWPKGVLDRLSENYMPVFE 242 (394)
T ss_dssp EEE-EEEEESSCHHHHHHHHSC-SSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEECSSSSCEEEECHHHHEEEECE
T ss_pred EEe-EEEEEecCchhhHhhccc-cchh-hCchhhhcccccccccCcceeEcCCceEEeccCCCCcchhhhhhcccccccc
Confidence 544 467899999999999999 8999 99999875311 111111100110111111000000
Q ss_pred --Ccccc-----ccCC----ccEEEEecCceeecc-C--CCeEEEEEEEEcCCCeEEEEEEEEEcCCCCCh--HHHHHHh
Q 039874 266 --TDDTH-----RLGS----KAIYAFIYPNFMINR-Y--GPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDD--KAFIEQS 329 (382)
Q Consensus 266 --~~~~~-----~~g~----~~~~~~lfPn~~i~~-~--~~~~~~~~~~P~s~~~t~v~~~~~~~~~~~~~--~~~~~~~ 329 (382)
..+.. ..|. .....+.+||+.... + +..++.-..+|+++++++++- +....-..+. .+|..++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~s~~lP~v~~v~~~p~~~~~~~~~~vPid~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (394)
T 3gcf_A 243 ATLDGETVLSAELTGEEKKVAAQVSVWLPGVLKVDPFPDPTLIQYEFYVPISETQHEYFQ-VLQRKVEGPEDVKTFEVEF 321 (394)
T ss_dssp EEETTEEEEECCCCSSCBCCCSEEEEETTTEEEEESCSSTTCEEEEEEEESSSSCEEEEE-EEEEECSSHHHHHHHHHHH
T ss_pred ccccccccccccccCcccccceeEEEEecCeeEeccCCCCCeEEEEEEeeccCCeEEEEE-EEEEECCCHHHHHHHHHHH
Confidence 00000 0121 123457899998764 2 345556677999999998664 4444443321 2332222
Q ss_pred ---c--cccCCchhhHHHHHHHHhhcccCCC-CCCCCCCCCcChHHHHHHHHHHHH
Q 039874 330 ---L--KDSEQVQMEDIILCEGVQRGLESPA-YCSGRYAPSVEQTMYHFHSLLHCN 379 (382)
Q Consensus 330 ---~--~~~~~v~~ED~~i~e~~q~~l~s~~-~~~g~~~~~~E~~i~~f~~~~~~~ 379 (382)
+ .....++.+|...-|++|.-...+. +..=+|- ..|..|..|++...+.
T Consensus 322 ~~~~~~~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~-~~d~~~~~~r~~~~~~ 376 (394)
T 3gcf_A 322 EERWRDDALHGFNDDDVWAREAQQEFYGERDGWSKEQLF-PPDMCIVKWRTLASER 376 (394)
T ss_dssp HHTHHHHTTTTTTHHHHHHHHHHHHHHHHSCHHHHCCCC-GGGHHHHHHHHHHHHH
T ss_pred HHHhHHHhhcccchhhHHHHHHHHHhhcccCCCChhhcc-CcchhHHHHHHHHHHh
Confidence 1 1346788999999999996654432 2111233 5699999999988764
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.95 E-value=1e-27 Score=190.85 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=93.1
Q ss_pred cCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecC-CCceee
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGL-DGTLLK 132 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~-~G~~~~ 132 (382)
..|+.||+++||+ +|+++.++++|++++|+| .+|+++|++|+|||||++|+.|.+.++.|+||||||+||+ +|+|+.
T Consensus 2 ~~w~~v~~~~~l~-~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~ 79 (103)
T 2qpz_A 2 VKWIEAVALSDIL-EGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALC 79 (103)
T ss_dssp CCEEEEEETTSCC-TTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEE
T ss_pred CccEEEEEHHHcC-CCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeC
Confidence 4699999999999 499999999999999999 6999999999999999999999877889999999999999 999999
Q ss_pred cccccCCCCCCccCCCCcceeeEEECcEEEEEcC
Q 039874 133 ATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMG 166 (382)
Q Consensus 133 ~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~ 166 (382)
.|.. .+|++|+|++++|+|||+++
T Consensus 80 ~P~~----------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 80 APVT----------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TTCC----------SCCCEECEEEETTEEEEECC
T ss_pred CCCC----------CCCCEEeEEEECCEEEEEcC
Confidence 8763 36889999999999999874
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.95 E-value=1.5e-27 Score=192.70 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=95.0
Q ss_pred cCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccC-CCCcceEEccCCCceecC-CCcee
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATG-SGKKSWFVCPYHGWTYGL-DGTLL 131 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g-~~~~~~i~CpyHgw~f~~-~G~~~ 131 (382)
..|+.||.++||+ +|+++.++++|++|+|+|. +|+++|++|+|||||++|+.| ...++.|+||||||+||+ +|+|+
T Consensus 4 ~~w~~v~~~~~l~-~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~ 81 (112)
T 1fqt_A 4 MKFTRVCDRRDVP-EGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVK 81 (112)
T ss_dssp CCCEEEEEGGGSC-TTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEE
T ss_pred cceEEeEeHHHCC-CCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEe
Confidence 4699999999999 5899999999999999998 899999999999999999988 777789999999999999 89999
Q ss_pred ecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 132 KATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 132 ~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
..|.. .+|++|+|++++|+|||+++++.
T Consensus 82 ~~P~~----------~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 82 SPPPC----------EALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp ESSCC----------SCCCBCCEEEETTEEEECTTCCB
T ss_pred CCCCC----------CCccEEEEEEECCEEEEEecccc
Confidence 98752 46889999999999999998764
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.95 E-value=1.1e-27 Score=193.36 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=94.1
Q ss_pred CCeeeeecCCcCCCCCeEEEEE-CCeeEEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecCC-Cceee
Q 039874 55 SWQVVGYTDQLKDPQDFFSGRI-GEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLD-GTLLK 132 (382)
Q Consensus 55 ~W~~v~~~~~l~~~g~~~~~~~-~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~~-G~~~~ 132 (382)
.|+.|++++||++ |+.+.+++ +|++++|+|.++|+++|+.|+|||||++|+.|.+.++.|+||||||+||++ |+|+.
T Consensus 1 ~W~~v~~~~~l~~-g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 79 (111)
T 1vm9_A 1 SFEKICSLDDIWV-GEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN 79 (111)
T ss_dssp CCEEEEEGGGSCT-TCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS
T ss_pred CcEEEEEHHHCCC-CCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC
Confidence 5999999999995 88899999 999999999989999999999999999999988777899999999999995 99997
Q ss_pred cccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 133 ATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 133 ~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
|. ..+|++|+|++++|+|||++++++
T Consensus 80 -p~----------~~~L~~~~v~~~~g~v~v~~~~~~ 105 (111)
T 1vm9_A 80 -PD----------DAALAEYPVEVKGDDIYVSTKGIL 105 (111)
T ss_dssp -SS----------SCBCCEECEEEETTEEEECCTTCC
T ss_pred -CC----------cCCcCEEEEEEECCEEEEeccCcC
Confidence 43 246899999999999999998876
No 17
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.95 E-value=7.5e-28 Score=193.25 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=92.9
Q ss_pred CCeeeeecCCcCCCCCeEEEEECCee-EEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecC-CCceee
Q 039874 55 SWQVVGYTDQLKDPQDFFSGRIGEVE-FVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGL-DGTLLK 132 (382)
Q Consensus 55 ~W~~v~~~~~l~~~g~~~~~~~~~~~-~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~-~G~~~~ 132 (382)
.|+.||+++||++ |+++.++++|++ ++|+|+ +|+++|+.|+|||||++|+.|...++.|+||||||+||+ +|+|+.
T Consensus 3 ~w~~v~~~~~l~~-g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~ 80 (108)
T 2i7f_A 3 NKLRLCQVASVKD-GEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKA 80 (108)
T ss_dssp CEEEEEEGGGCBT-TBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCS
T ss_pred ccEEEEEHhHcCC-CCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeC
Confidence 5999999999994 889999999999 999998 999999999999999999998877889999999999998 999998
Q ss_pred cccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 133 ATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 133 ~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
.|.. .+|++|+|++++|+|||++++++
T Consensus 81 ~P~~----------~~L~~~~v~~~~g~v~v~~~~~~ 107 (108)
T 2i7f_A 81 FPCQ----------IPIKTYPVTIEDGWVCIDQPKES 107 (108)
T ss_dssp TTCC----------SCCCEECEEEETTEEEEECC---
T ss_pred CCCC----------CCccEEeEEEECCEEEEeCCCCC
Confidence 8763 46889999999999999998653
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.95 E-value=1.7e-27 Score=193.25 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=94.7
Q ss_pred cCCeeeeecCCcCCCCCeEEEEECCe-eEEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecC-CCcee
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIGEV-EFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGL-DGTLL 131 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~~~-~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~-~G~~~ 131 (382)
+.|+.||.++||+ +|+++.+++.|+ +|+|+|. +|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|+|+
T Consensus 3 ~~w~~v~~~~el~-~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 3 QIWLKVCAASDMQ-PGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp -CCEEEEEGGGCC-TTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred cceEEeEEHHHCC-CCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 5699999999999 588999999999 9999998 999999999999999999998877889999999999998 99999
Q ss_pred ecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 132 KATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 132 ~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
.+|.. .+|++|+|++++|+|||+++++.
T Consensus 81 ~~P~~----------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 81 SSPCT----------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp ETTCC----------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred CCCCc----------CCCCEEEEEEECCEEEEecCCcc
Confidence 98863 46899999999999999997654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.95 E-value=1.4e-27 Score=191.09 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=93.9
Q ss_pred CCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCCCCcceEEccCCCceecC-CCceeec
Q 039874 55 SWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGL-DGTLLKA 133 (382)
Q Consensus 55 ~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~-~G~~~~~ 133 (382)
.|+.||.++||+ +|+.+.++++|++|+|+| .+|+++|++|+|||||++|+.|.+.++.|+||||||+||+ +|+|+..
T Consensus 1 ~W~~v~~~~~l~-~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~ 78 (106)
T 3dqy_A 1 TWTYILRQGDLP-PGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKAL 78 (106)
T ss_dssp CCEEEEEGGGSC-TTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEET
T ss_pred CcEEEEEHHHCC-CCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 599999999999 589999999999999999 5899999999999999999999888889999999999997 9999998
Q ss_pred ccccCCCCCCccCCCCcceeeEEECcEEEEEcCCC
Q 039874 134 TRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKE 168 (382)
Q Consensus 134 p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~ 168 (382)
|.. .+|++|+|++.+|.|||++++.
T Consensus 79 P~~----------~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 79 PAC----------KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp TCC----------SCCCEECEEEETTEEEECGGGC
T ss_pred CCC----------CCccEEEEEEECCEEEEEcccc
Confidence 863 3688999999999999998764
No 20
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.94 E-value=5.2e-28 Score=207.10 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=97.0
Q ss_pred cccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccCCCCc----ceEEccCCCceecC-
Q 039874 52 FYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKK----SWFVCPYHGWTYGL- 126 (382)
Q Consensus 52 f~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~~----~~i~CpyHgw~f~~- 126 (382)
+.+.|+.||+++||++ |+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.+.+ +.|+||||||+||+
T Consensus 13 ~~~~W~~v~~~~el~~-g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 13 KKYTSVCVGREEDIRK-SERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp -CCSCEEEEEHHHHHH-HSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCceEEEEEHHHCCC-CCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 5688999999999995 88999999999999999 58999999999999999999987643 68999999999999
Q ss_pred CCceee--c-cccc-CCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 127 DGTLLK--A-TRIT-GIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 127 ~G~~~~--~-p~~~-~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
+|+|+. + |... ..+.|.....+|++|+|++++|+|||++++++
T Consensus 91 tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp TCEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred CcCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 999996 2 6421 12222223467999999999999999999875
No 21
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.94 E-value=1.4e-26 Score=189.53 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=93.1
Q ss_pred CCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCccccC--CCCcceEEccCCCceecC-CCcee
Q 039874 55 SWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATG--SGKKSWFVCPYHGWTYGL-DGTLL 131 (382)
Q Consensus 55 ~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g--~~~~~~i~CpyHgw~f~~-~G~~~ 131 (382)
.|+.||.++||+ +|+.+.++++|++|+|+|. +|+++|+.|+|||||++|+.| .+.++.|+||||||+||+ +|+|+
T Consensus 10 ~w~~v~~~~el~-~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 87 (121)
T 3gce_A 10 TPVRVATLDQLK-PGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPT 87 (121)
T ss_dssp CCEEEEEGGGSC-TTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEE
T ss_pred CcEEEEEHHHCC-CCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEe
Confidence 599999999999 5889999999999999996 899999999999999999999 788889999999999997 99999
Q ss_pred ecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 132 KATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 132 ~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
..|.. .+|++|+|++.+|.|||+++...
T Consensus 88 ~~P~~----------~~L~~~~v~v~~g~V~v~~~~~~ 115 (121)
T 3gce_A 88 ALPCV----------LPVRAYDVVVDGTEILVAPKEAD 115 (121)
T ss_dssp ETTCC----------SCCCBCCEEEETTEEEECCC---
T ss_pred CCCCc----------CCcceEEEEEECCEEEEEECccc
Confidence 98863 35889999999999999998765
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.94 E-value=1.2e-26 Score=187.79 Aligned_cols=102 Identities=20% Similarity=0.363 Sum_probs=91.6
Q ss_pred cCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCC-cEEEEeccCcCCCC-ccccCCCC---cc-eEEccCCCceecC-
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNG-KIHAFHNVCRHHAS-ILATGSGK---KS-WFVCPYHGWTYGL- 126 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g-~~~a~~n~C~Hrg~-~L~~g~~~---~~-~i~CpyHgw~f~~- 126 (382)
..|+.||.++||+ +|+++.++++|++|+|+|..+| +++|+.|+|||||+ +|+.|... +. .|+||||||+||+
T Consensus 5 ~~w~~v~~~~el~-~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDIL-PETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSC-TTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCC-CCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 3599999999999 6889999999999999999899 69999999999999 79988754 23 7999999999999
Q ss_pred CCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCC
Q 039874 127 DGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGK 167 (382)
Q Consensus 127 ~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~ 167 (382)
+|+|+..|. ..|++|+|++.+|+|||++++
T Consensus 84 tG~~~~~P~-----------~~l~~~~v~v~~g~V~v~~~~ 113 (113)
T 2jo6_A 84 DGLCMEDEQ-----------FSVKHYEARVKDGVVQLRGGS 113 (113)
T ss_dssp TTEETTTTT-----------TCCCEEEEEEETTEEEEECCC
T ss_pred CccCCCCCc-----------ccccEEeEEEECCEEEEEcCC
Confidence 999998874 468899999999999999863
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.94 E-value=3.9e-27 Score=195.17 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=93.2
Q ss_pred CCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCC-cEEEEeccCcCCCCc-cccCCCC---c-ceEEccCCCceecC-C
Q 039874 55 SWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNG-KIHAFHNVCRHHASI-LATGSGK---K-SWFVCPYHGWTYGL-D 127 (382)
Q Consensus 55 ~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g-~~~a~~n~C~Hrg~~-L~~g~~~---~-~~i~CpyHgw~f~~-~ 127 (382)
.|+.||.++||+ +|+++.++++|++|+|+|+.+| +++|+.|+|||||++ |+.|.+. + ..|+||||||+||+ +
T Consensus 3 ~w~~v~~~~el~-~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 3 QWTTVCKLDDIL-PGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp SEEEEEETTTSC-TTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred ceEEEEEHHHCC-CCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 599999999999 5888999999999999998778 999999999999995 9988653 2 38999999999999 9
Q ss_pred CceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCcc
Q 039874 128 GTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAV 170 (382)
Q Consensus 128 G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~ 170 (382)
|+|+..|. .+|++|+|++++|+|||++++++.
T Consensus 82 G~~~~~P~-----------~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 82 GFCLEDGA-----------YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CCBSSCCS-----------SCCBCCCEEESSSEEEEECCCCCC
T ss_pred cCCCCCCc-----------CcceEEEEEEECCEEEEEeCCCCC
Confidence 99998874 458899999999999999987763
No 24
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.94 E-value=6.9e-27 Score=190.77 Aligned_cols=104 Identities=13% Similarity=-0.001 Sum_probs=93.2
Q ss_pred cCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCC-ccccCCCCc----ceEEccCCCceecC-C
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHAS-ILATGSGKK----SWFVCPYHGWTYGL-D 127 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~-~L~~g~~~~----~~i~CpyHgw~f~~-~ 127 (382)
+.|+.||.++||+ +|+++.++++|++|+|+|+.+|+++|+.|+|||||+ +|+.|...+ ..|+||||||+||+ +
T Consensus 4 ~~w~~v~~~~el~-~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLM-PFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSC-BTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCC-CCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 5799999999999 588999999999999999989999999999999999 799887543 28999999999999 9
Q ss_pred CceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 128 GTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 128 G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
|+|+..|. .+|++|+|++.+|.|||++++..
T Consensus 83 G~~~~~P~-----------~~l~~~~v~v~~g~V~v~~~~~~ 113 (119)
T 3c0d_A 83 GQCLEDEA-----------HCLKTWRVTVDDNQVCYLAKELE 113 (119)
T ss_dssp CBBSSCTT-----------CBCCEECEEESSSEEEEECCCC-
T ss_pred CcCCCCCC-----------ceeeEEEEEEECCEEEEEeCCcc
Confidence 99998774 35889999999999999997653
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=5e-26 Score=185.13 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=85.8
Q ss_pred cCCeeeeecCCcCCCCCeEEEEEC-CeeEEEEEcCCCcEEEEeccCcCCCCccccCCCC-----cceEEccCCCceecC-
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIG-EVEFVVCRDDNGKIHAFHNVCRHHASILATGSGK-----KSWFVCPYHGWTYGL- 126 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~-~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~g~~~-----~~~i~CpyHgw~f~~- 126 (382)
+.|+.||.++||+ +|..+.+.+. |++|+|+|..||+++|++|+|||||++|..|... ...|+||||||+||+
T Consensus 8 ~~W~~Vc~~~dL~-~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLI-PGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSC-TTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcC-CCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 4699999999999 6777777774 7999999999999999999999999999865432 246999999999998
Q ss_pred CCceeecccccCCCCCCccCCCCcceeeEEE-CcEEEEEcC
Q 039874 127 DGTLLKATRITGIKDFNVKEFGLVPLEVATW-GPFVLLNMG 166 (382)
Q Consensus 127 ~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~-~g~v~v~~~ 166 (382)
+|+|+..|. ..|++|||++. +|+|||...
T Consensus 87 tG~~~~~p~-----------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-----------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-----------CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-----------CccceEEEEEEeCCEEEEecC
Confidence 899998764 34888999865 799999764
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.88 E-value=4.8e-22 Score=164.03 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred cCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEeccCcCCCCcccc
Q 039874 54 RSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDD--------------------------NGKIHAFHNVCRHHASILAT 107 (382)
Q Consensus 54 ~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~--------------------------~g~~~a~~n~C~Hrg~~L~~ 107 (382)
..|+.| ..++|+ +|+.+++.+.|++++|+|.. +|+++|+.|+|||||++|+.
T Consensus 4 ~~~~~v-~~s~l~-~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~ 81 (129)
T 1rie_A 4 MSKIEI-KLSDIP-EGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIA 81 (129)
T ss_dssp CSSEEE-EGGGSC-TTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEE
T ss_pred cCceEe-eHHHCC-CCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccc
Confidence 467877 899999 79999999999999999964 89999999999999999999
Q ss_pred CCCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEE-ECcEEEE
Q 039874 108 GSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVAT-WGPFVLL 163 (382)
Q Consensus 108 g~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~-~~g~v~v 163 (382)
|.+.++.|+||||||+||++|+++..|... .|..+++++ .+|.|+|
T Consensus 82 g~~~~~~i~CP~Hg~~fd~~G~~~~~P~~~----------~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 82 NAGDFGGYYCPCHGSHYDASGRIRKGPAPL----------NLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TCTTTEEEEETTTTEEEETTCCEEESSCCS----------CCCCCCEEESSSSEEEE
T ss_pred ccCCCCEEEcCCCCCEEcCCCCEeeCCCCC----------CCCceeEEEEeCCEEEE
Confidence 988888999999999999999999987633 466778888 7899987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.87 E-value=9.3e-23 Score=170.28 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=87.8
Q ss_pred cCCeeeee-cCCcCCCCCeEEEEECCeeEEEEEcCCCcE--EEEeccCcCCCCccccCCCCcceEEccCCCceecCCCce
Q 039874 54 RSWQVVGY-TDQLKDPQDFFSGRIGEVEFVVCRDDNGKI--HAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTL 130 (382)
Q Consensus 54 ~~W~~v~~-~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~--~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~~G~~ 130 (382)
..|+.++. .+||++.+++....+.+++++++|+.+|++ +|++|+|||||++|+.|. .++.|+||||||+||.+|+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 46888887 899996655444446788888888889999 999999999999999776 35789999999999999999
Q ss_pred eecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCC
Q 039874 131 LKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKE 168 (382)
Q Consensus 131 ~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~ 168 (382)
+..|.. ..|++|+|++.+|.|||.+..+
T Consensus 99 ~~~P~~----------~~L~~~~v~v~~g~V~V~~~~~ 126 (139)
T 1rfs_A 99 VRGPAP----------LSLALAHCDVDDGKVVFVPWTE 126 (139)
T ss_dssp EESSCC----------SCCCEEEEEEETTEEEEEECCS
T ss_pred ccCCCC----------CCCCEEEEEEECCEEEEEeCCc
Confidence 998852 3588999999999999997543
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.86 E-value=2.2e-21 Score=160.89 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=86.4
Q ss_pred ccCCeeeeecCCcCCCCCeEEEEEC--CeeEEEEEcC---------CCcEEEEeccCcCCCCccccCCCCcceEEccCCC
Q 039874 53 YRSWQVVGYTDQLKDPQDFFSGRIG--EVEFVVCRDD---------NGKIHAFHNVCRHHASILATGSGKKSWFVCPYHG 121 (382)
Q Consensus 53 ~~~W~~v~~~~~l~~~g~~~~~~~~--~~~~vv~r~~---------~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHg 121 (382)
.-.|+.||..+||++ |+++.+++. +++++|+|.. +|+++|+.|+|||+|++|+.+ ..++.|+|||||
T Consensus 5 ~~p~~~v~~~~dl~~-g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg 82 (133)
T 1g8k_B 5 AYPATAVSVAKNLAA-NEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHF 82 (133)
T ss_dssp CCCCEEEEEGGGCCB-TCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTC
T ss_pred CCCceeEEEHHHCCC-CCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCC
Confidence 345899999999995 888899885 8999999985 899999999999999999973 456789999999
Q ss_pred ceecC--CCceeecccccCCCCCCccCCCCcceeeEEE--CcEEEEE
Q 039874 122 WTYGL--DGTLLKATRITGIKDFNVKEFGLVPLEVATW--GPFVLLN 164 (382)
Q Consensus 122 w~f~~--~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~--~g~v~v~ 164 (382)
|+||+ +|+++..|.. ..|.+|+|++. +|.|||.
T Consensus 83 ~~Fd~~~~G~~~~gP~~----------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 83 TEFDAEKAGQMICGEAT----------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp CEEEGGGTTEEEESSCS----------SCCCEEEEEEETTTTEEEEE
T ss_pred CEECCCCCCCEEcCCCC----------CCCCEEEEEEECCCCEEEEE
Confidence 99999 8999998753 35788899988 7889984
No 29
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.82 E-value=2.7e-20 Score=160.71 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=86.5
Q ss_pred cccCCeeeeecCCcCCCCCeEEEEECC--eeEEEEEc---------CCCcEEEEeccCcCCCCccccCCCCcceEEccCC
Q 039874 52 FYRSWQVVGYTDQLKDPQDFFSGRIGE--VEFVVCRD---------DNGKIHAFHNVCRHHASILATGSGKKSWFVCPYH 120 (382)
Q Consensus 52 f~~~W~~v~~~~~l~~~g~~~~~~~~~--~~~vv~r~---------~~g~~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyH 120 (382)
..--+..||+++||+ +|+.+.+++.+ ++++|+|. .+|+++|++|+|||||++|+.| ..++.|+||||
T Consensus 47 ~~~p~~~v~~~~dL~-~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~H 124 (175)
T 4aay_B 47 VEYPANRLANISELT-LNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGH 124 (175)
T ss_dssp CCCCCEEEEEGGGCB-BTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTT
T ss_pred cCCCcceEEEHHHCC-CCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCC
Confidence 444567899999999 48889999874 68999997 5899999999999999999988 56778999999
Q ss_pred CceecCC--CceeecccccCCCCCCccCCCCcceeeEE-ECcEEEEE
Q 039874 121 GWTYGLD--GTLLKATRITGIKDFNVKEFGLVPLEVAT-WGPFVLLN 164 (382)
Q Consensus 121 gw~f~~~--G~~~~~p~~~~~~~~~~~~~~l~~~~v~~-~~g~v~v~ 164 (382)
||+||++ |+|+..|.. ..|++|++++ .+|.||+-
T Consensus 125 g~~Fd~~~tG~~~~gPa~----------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 125 FSVFDPEKGGQQVWGQAT----------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp CCEEEGGGTTEEEECSCS----------SCCCBEEEEECTTSEEEEE
T ss_pred CCEECCCCCceEecCCCC----------CCcCEEEEEEEcCCEEEEE
Confidence 9999996 999998863 3578889998 58888863
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.69 E-value=2.4e-21 Score=159.73 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=80.6
Q ss_pred CCeee-eecCCcCCCCCeEEEE-ECCeeEEEEEcCCCc--EEEEeccCcCCCCccccCCCCcceEEccCCCceecCCCce
Q 039874 55 SWQVV-GYTDQLKDPQDFFSGR-IGEVEFVVCRDDNGK--IHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTL 130 (382)
Q Consensus 55 ~W~~v-~~~~~l~~~g~~~~~~-~~~~~~vv~r~~~g~--~~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~~G~~ 130 (382)
.|+.+ ...++++ +|+...+. +.|.+.+++|..+|+ ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|
T Consensus 15 ~~v~~~~~~~~l~-~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 92 (133)
T 3azc_A 15 NDIKVSEYLAKHL-PGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKV 92 (133)
Confidence 34443 3556777 46665555 345566666667898 9999999999999999877 45789999999999999999
Q ss_pred eecccccCCCCCCccCCCCcceeeEE-ECcEEEEEcCCC
Q 039874 131 LKATRITGIKDFNVKEFGLVPLEVAT-WGPFVLLNMGKE 168 (382)
Q Consensus 131 ~~~p~~~~~~~~~~~~~~l~~~~v~~-~~g~v~v~~~~~ 168 (382)
+..|.. .+|++|+|++ .+|.|||.+.++
T Consensus 93 ~~~P~~----------~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 93 VRGPAP----------LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 998853 3588999999 999999997654
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.78 E-value=1.1e-18 Score=152.35 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=81.7
Q ss_pred cccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEeccCcCCCCcc
Q 039874 52 FYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDD--------------------------NGKIHAFHNVCRHHASIL 105 (382)
Q Consensus 52 f~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~--------------------------~g~~~a~~n~C~Hrg~~L 105 (382)
....|+.| ..++|+ +|+.+++.+.|++++|+|.. +|+++|+.|+|+|+|+.+
T Consensus 59 ~a~~~v~V-~~s~l~-~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p 136 (185)
T 3cx5_E 59 LAMAKVEV-NLAAIP-LGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVP 136 (185)
T ss_dssp CCCCCEEE-EGGGCC-TTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCC
T ss_pred hccCcEEE-EHHHCC-CCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCcee
Confidence 44579999 699999 79999999999999999974 689999999999999964
Q ss_pred ccCCCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEEECcEEEE
Q 039874 106 ATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLL 163 (382)
Q Consensus 106 ~~g~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v 163 (382)
....+..+.|.||||||+||++|+++..|... .|..+++.+.+|.|+|
T Consensus 137 ~~~~~~~~~~~CPcHGs~FD~~G~v~~gPa~~----------~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 137 IGEAGDFGGWFCPCHGSHYDISGRIRKGPAPL----------NLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EEEETTTTEEEETTTTEEECTTCCEEESSCCS----------CCCCCCEEEETTEEEE
T ss_pred ccCCCCCCEEEcCCCCCEECCCCCEecCCCCC----------CcceEEEEEECCEEEE
Confidence 43223557899999999999999999988643 2444455557899987
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.77 E-value=1.5e-18 Score=152.45 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=82.8
Q ss_pred eeeecCCcCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEeccCcCCCCccccCCCC
Q 039874 58 VVGYTDQLKDPQDFFSGRIGEVEFVVCRDD--------------------------NGKIHAFHNVCRHHASILATGSGK 111 (382)
Q Consensus 58 ~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~--------------------------~g~~~a~~n~C~Hrg~~L~~g~~~ 111 (382)
..+..++|+ +|+.+++.+.|++++|+|.. +|+++|+.|+|+|+|++|..|.+.
T Consensus 74 v~v~ls~l~-~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~ 152 (196)
T 1pp9_E 74 IEIKLSDIP-EGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGD 152 (196)
T ss_dssp EEEEGGGSC-TTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCST
T ss_pred cEEEHHHCC-CCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCC
Confidence 357999999 79999999999999999962 899999999999999999988877
Q ss_pred cceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEE-ECcEEEE
Q 039874 112 KSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVAT-WGPFVLL 163 (382)
Q Consensus 112 ~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~-~~g~v~v 163 (382)
.+.|.||||||+||++|+++..|... .|..+++++ .+|.|+|
T Consensus 153 ~~~~~CP~HGs~FD~~G~v~~gPa~~----------~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 153 FGGYYCPCHGSHYDASGRIRKGPAPL----------NLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp TSSEEETTTTEEECTTCCEEESSCCS----------CCCCCCEEEETTTEEEE
T ss_pred CCEEEeCCCCCEECCCCCCccCCCCC----------CCcceeEEEEECCEEEE
Confidence 78899999999999999999988643 356667777 6888886
No 33
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.76 E-value=2.3e-18 Score=143.65 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=79.8
Q ss_pred ecCCcCCCCCeEEEEECCeeEEEEEcC----------------------------------------CCcEEEEeccCcC
Q 039874 61 YTDQLKDPQDFFSGRIGEVEFVVCRDD----------------------------------------NGKIHAFHNVCRH 100 (382)
Q Consensus 61 ~~~~l~~~g~~~~~~~~~~~~vv~r~~----------------------------------------~g~~~a~~n~C~H 100 (382)
..++|+ +|+.+++...|+|++|.|.. +|+++|+.|+|||
T Consensus 7 d~s~l~-~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 7 DVSSVE-PGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp ECTTCC-TTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred ecccCC-CCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 567888 79999999999999999951 7899999999999
Q ss_pred CCCcccc-CCCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEE-ECcEEEE
Q 039874 101 HASILAT-GSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVAT-WGPFVLL 163 (382)
Q Consensus 101 rg~~L~~-g~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~-~~g~v~v 163 (382)
+|++|+. +.+..+.|.||||||+||++|+++..|... .|..+++++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~----------~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPE----------NLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCS----------CCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCC----------CCCceeEEEEECCEEEE
Confidence 9999997 777778899999999999999999987633 366777887 6888887
No 34
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.76 E-value=3.4e-18 Score=149.54 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCeeeeecCCcCCCCCeEEEEECCeeEEEEEc----------------------------------------CCCcEEEE
Q 039874 55 SWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRD----------------------------------------DNGKIHAF 94 (382)
Q Consensus 55 ~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~----------------------------------------~~g~~~a~ 94 (382)
.|+.| ..++|+ +|+.+++.+.|++++|+|. .+|+++|+
T Consensus 48 ~~v~v-~ls~l~-~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~ 125 (187)
T 2qjy_C 48 ASIFV-DVSSVE-PGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVM 125 (187)
T ss_dssp CCEEE-ECTTCC-TTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEE
T ss_pred ccEEE-EHHHCC-CCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEE
Confidence 46655 889998 7999999999999999992 27999999
Q ss_pred eccCcCCCCcccc-CCCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEEE-CcEEEE
Q 039874 95 HNVCRHHASILAT-GSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATW-GPFVLL 163 (382)
Q Consensus 95 ~n~C~Hrg~~L~~-g~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~-~g~v~v 163 (382)
.|+|||+|++|.. +.+..+.|.||||||+||++|+++..|... .|..+++++. +|.|+|
T Consensus 126 ~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~~----------~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 126 WGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE----------NLPIPLAKFIDETTIQL 186 (187)
T ss_dssp ECCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCS----------CCCBCSEEEEETTEEEE
T ss_pred eCccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCCC----------CCceEEEEEEeCCEEEE
Confidence 9999999999997 455557899999999999999999987633 3666677775 688887
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.74 E-value=3.5e-18 Score=146.33 Aligned_cols=97 Identities=23% Similarity=0.303 Sum_probs=78.4
Q ss_pred ecCCcCCCCCeEEEEECCe-------------eEEEEEc-------------CCCcEEEEeccCcCCCCccccCCCCcce
Q 039874 61 YTDQLKDPQDFFSGRIGEV-------------EFVVCRD-------------DNGKIHAFHNVCRHHASILATGSGKKSW 114 (382)
Q Consensus 61 ~~~~l~~~g~~~~~~~~~~-------------~~vv~r~-------------~~g~~~a~~n~C~Hrg~~L~~g~~~~~~ 114 (382)
..++|+ +|+.+++..-|. .+++.|. .+| ++||.|+|||||++|+.|.+.++.
T Consensus 26 ~~sdl~-~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~ 103 (165)
T 1nyk_A 26 RLEELK-PGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEA 103 (165)
T ss_dssp BGGGCC-TTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTE
T ss_pred cHHHCC-CCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCE
Confidence 677888 577666665333 2566666 355 999999999999999988887889
Q ss_pred EEccCCCceecCC-Cc-eeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCc
Q 039874 115 FVCPYHGWTYGLD-GT-LLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEA 169 (382)
Q Consensus 115 i~CpyHgw~f~~~-G~-~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 169 (382)
|+||||||+||++ |. |+..|.. ..|..+++++.+|.|||+++...
T Consensus 104 i~CP~Hgs~Fd~~tG~~~~~gPa~----------~~L~~~~v~v~~g~V~v~~~~~~ 150 (165)
T 1nyk_A 104 ALCPCHGGVYDLRHGAQVIAGPPP----------RPVPQLPVRVEDGVLVAAGEFLG 150 (165)
T ss_dssp EECTTTCCEEEGGGTTEEEESSCS----------SCCCEECEEEETTEEEECSSCSS
T ss_pred EECCCCCCEEcCCCCCeeecCCCC----------CCCcEEEEEEECCEEEEEecCcc
Confidence 9999999999995 86 9988752 35888999999999999998765
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.70 E-value=1.3e-18 Score=151.50 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=78.7
Q ss_pred cCCcCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEEeccCcCCCCccccCCCCcceEEccCCCceecCCCceeecccccC
Q 039874 62 TDQLKDPQDFFSGR-IGEVEFVVCRDDNGKI--HAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITG 138 (382)
Q Consensus 62 ~~~l~~~g~~~~~~-~~~~~~vv~r~~~g~~--~a~~n~C~Hrg~~L~~g~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~ 138 (382)
.++|+ +|+...+. +.|++++++|+.+|++ +|+.|+|+|+|++|..+.. ++.|.||||||+||.+|+++..|..
T Consensus 70 ~~~l~-~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~~-~~~~~CP~Hgs~Fd~~G~~~~gPa~-- 145 (179)
T 1vf5_D 70 LESHN-AGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDETGRVIRGPAP-- 145 (179)
T ss_dssp HHCCC-TTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCSS-SSSEECTTTCCEECSSSCCCSSSCC--
T ss_pred ccccC-CCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccCC-CCEEECCCCCCEECCCCcEecCCCC--
Confidence 46778 67766665 6789999999899997 9999999999999997764 4679999999999999999998753
Q ss_pred CCCCCccCCCCcceeeEEECcEEEEEcCC
Q 039874 139 IKDFNVKEFGLVPLEVATWGPFVLLNMGK 167 (382)
Q Consensus 139 ~~~~~~~~~~l~~~~v~~~~g~v~v~~~~ 167 (382)
..|..+++++.+|.|||.+-.
T Consensus 146 --------~~L~~~~v~v~~g~v~v~~~~ 166 (179)
T 1vf5_D 146 --------LSLALCHATVQDDNIVLTPWT 166 (179)
T ss_dssp --------SCCBCCCCCCSSSSCCCCCCC
T ss_pred --------CCCCeEEEEEECCEEEEEeec
Confidence 357778888889999997643
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.65 E-value=9.2e-18 Score=148.41 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=69.7
Q ss_pred EEEEECCeeEEEEEcC------------CCcEEEEeccCcCCCCccccCC-----------CCcceEEccCCCceecCC-
Q 039874 72 FSGRIGEVEFVVCRDD------------NGKIHAFHNVCRHHASILATGS-----------GKKSWFVCPYHGWTYGLD- 127 (382)
Q Consensus 72 ~~~~~~~~~~vv~r~~------------~g~~~a~~n~C~Hrg~~L~~g~-----------~~~~~i~CpyHgw~f~~~- 127 (382)
+.+++.+.+++++|.. +|+++|+.|+|||+|++|+.|. ..++.|+||||||+||++
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4466778888888876 7999999999999999999773 356789999999999996
Q ss_pred -CceeecccccCCCCCCccCCCCcceeeEEE--CcEEEEEcCC
Q 039874 128 -GTLLKATRITGIKDFNVKEFGLVPLEVATW--GPFVLLNMGK 167 (382)
Q Consensus 128 -G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~--~g~v~v~~~~ 167 (382)
|+++..|... .|..+++++. +|.||+....
T Consensus 136 GG~v~~gPa~~----------~L~~~~v~v~~~~g~v~v~g~~ 168 (204)
T 1jm1_A 136 GGVVVSGPAPR----------PLPIVILDYDSSTGDIYAVGTN 168 (204)
T ss_dssp TSEEEESSCCS----------CCCBEEEEECTTTCEEEEEEES
T ss_pred CCeEecCCCCC----------CCCeEeeEEEecCCEEEEEeCC
Confidence 6999887532 3666666665 8999997643
No 38
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=38.48 E-value=78 Score=23.74 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=33.3
Q ss_pred HHHHHHHHhccccCCeeeeecCCcC-----CCCCeEEEEECCeeEEEEEc
Q 039874 42 SFLALELHRVFYRSWQVVGYTDQLK-----DPQDFFSGRIGEVEFVVCRD 86 (382)
Q Consensus 42 ~~~~~E~~~if~~~W~~v~~~~~l~-----~~g~~~~~~~~~~~~vv~r~ 86 (382)
+....|.++.|...|++|-- ..+. +++.++-+.+++..++|||.
T Consensus 53 ~~IK~~fDkkyG~~WHcIVG-~~FGs~vThe~~~fiyF~~g~~aiLlfKt 101 (102)
T 1yo3_A 53 AHIKKEFDRKYDPTWHCVVG-RNFGSYVTHETKNFIYFYIGQVAILLFKS 101 (102)
T ss_dssp HHHHHHHHHHHCSCEEEEES-SSCCCEEESCCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHhhhcCCCCEEEEc-cCeeEEEEEeCCcEEEEEECCEEEEEEec
Confidence 34457888999999998754 3332 25678888999999999985
No 39
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=37.79 E-value=67 Score=23.38 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=32.7
Q ss_pred HHHHHHHHhccccCCeeeeecCCcC-----CCCCeEEEEECCeeEEEEEc
Q 039874 42 SFLALELHRVFYRSWQVVGYTDQLK-----DPQDFFSGRIGEVEFVVCRD 86 (382)
Q Consensus 42 ~~~~~E~~~if~~~W~~v~~~~~l~-----~~g~~~~~~~~~~~~vv~r~ 86 (382)
+....|.++-+...|++|--.+ +. +++.++-+.+++..++|||.
T Consensus 40 ~~IK~~fD~kyg~~WhciVG~~-Fgs~vthe~~~fiyF~~g~~~iLlfKt 88 (89)
T 3rjs_A 40 AFIKKEFDRKHNPTWHCVVGRN-FGSYVTHETHHFIYFYIGQVAVLLFKS 88 (89)
T ss_dssp HHHHHHHHHHHCSCCEEEEESS-CCCCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHhcccCCCCEEEEecC-eeEEEEEcCCcEEEEEECCEEEEEEec
Confidence 3455788889999999875443 32 24567778889999999985
No 40
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=27.01 E-value=81 Score=23.38 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=33.1
Q ss_pred HHHHHHHHhccccCCeeeeec---CCcC-CCCCeEEEEECCeeEEEEEc
Q 039874 42 SFLALELHRVFYRSWQVVGYT---DQLK-DPQDFFSGRIGEVEFVVCRD 86 (382)
Q Consensus 42 ~~~~~E~~~if~~~W~~v~~~---~~l~-~~g~~~~~~~~~~~~vv~r~ 86 (382)
+....|.++-|...|++|--. +.+. +++.++-+.+++..++|||.
T Consensus 48 ~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~aiLlfKt 96 (97)
T 4ds1_A 48 GTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 96 (97)
T ss_dssp HHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEEEEEec
Confidence 345578899999999987422 2221 25778888999999999985
No 41
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0
Probab=21.63 E-value=28 Score=28.80 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.3
Q ss_pred cCCCceecC-CCceeec
Q 039874 118 PYHGWTYGL-DGTLLKA 133 (382)
Q Consensus 118 pyHgw~f~~-~G~~~~~ 133 (382)
+.|||.||. +|++..+
T Consensus 149 ~V~G~vydi~tG~l~~V 165 (166)
T 3las_A 149 IISGAIYDVDTGRVREV 165 (166)
T ss_dssp EEEEEEECTTTCCEEEC
T ss_pred EEEEEEEECCCcEEEEe
Confidence 589999999 7988643
Done!