BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039878
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 117/256 (45%), Gaps = 20/256 (7%)
Query: 8 QESAKKAI-GFIEAITLIAKEEGIKGYWKGNLPQVIRVLPYSAVQLFAYETYKKLFKG-- 64
Q SA+K G I+ + I KE+G +W+GNL VIR P A+ + YK++F G
Sbjct: 43 QISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV 102
Query: 65 ---KDGELSVIGRLAAGACAGMTSTFVTYPLDVLRLRLAVEPG-------YQTMSQVALN 114
K G LA+G AG TS YPLD R RLA + G + +
Sbjct: 103 DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162
Query: 115 MLREEGFSSFYHGLGPALIGIAPYIAVNFCIFDLVKKALPEKYRQKTQTSLLTAVVSAGV 174
+ + +G Y G ++ GI Y A F ++D K LP+ S + A V
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAV 222
Query: 175 ATLTCYPLDTIRRQMQM----KGTP--YKSVIDAFAGIVERDGVTGLYRGFVPNALKTLP 228
A L YP DT+RR+M M KG Y +D + I + +G ++G N L+ +
Sbjct: 223 AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG 282
Query: 229 NSSIRLTTFDIVKRII 244
+ + L +D +K+ +
Sbjct: 283 GAFV-LVLYDEIKKFV 297
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 164 SLLTAVVSAGVATLTCYPLDTIRRQMQMKGTP--------YKSVIDAFAGIVERDGVTGL 215
L V+A ++ P++ ++ +Q++ YK +ID I + G
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 216 YRGFVPNALKTLPNSSIRLTTFDIVKRIIAGS---EKEFQRITEEN 258
+RG + N ++ P ++ D K+I G K+F R N
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGN 115
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 18 IEAITLIAKEEGIKGYWKGNLPQVIRVLPYSAVQLFAYETYKK-LFKGKDGELSVIGRLA 76
+EA IA+EEGI+G WKG P V R + +L Y+ K L K +
Sbjct: 148 VEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFT 207
Query: 77 AGACAGMTSTFVTYPLDVLRLRL--AVEPGYQTMSQVALNMLREEGFSSFYHGLGPALIG 134
+ AG +T + P+DV++ R + Y + AL MLR+EG +FY G P+ +
Sbjct: 208 SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
Query: 135 IAPYIAVNFCIFDLVKKALPEKYRQK 160
+ + V F ++ +K+AL Y+ +
Sbjct: 268 LGSWNVVMFVTYEQLKRALMAAYQSR 293
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 75 LAAGACAGMTSTFVTYPLDVLRLRLAVEPGYQTMSQVA------------LNMLREEGFS 122
L AG A + + +T+PLD ++RL ++ Q + + A L M+R EG
Sbjct: 6 LGAGTAACI-ADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 123 SFYHGLGPALIGIAPYIAVNFCIFDLVKKALPEKYRQKTQTS-LLTAVVSAGVATLTCYP 181
S Y+GL L + +V ++D VK+ + S LL + +A P
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQP 124
Query: 182 LDTIRRQMQMK-----GTPYKSVIDAFAGIVERDGVTGLYRGFVPNALKTLPNSSIRLTT 236
D ++ + Q + G Y+S ++A+ I +G+ GL++G PN + + L T
Sbjct: 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 237 FDIVK 241
+D++K
Sbjct: 185 YDLIK 189
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 9/238 (3%)
Query: 16 GFIEAITLIAKEEGIKGYWKGNLPQVIRVLPYSAVQLFAYETYKKLFKGKDGELSVIGRL 75
G + I + + EG + + G + + R + +++V++ Y++ K+ + + RL
Sbjct: 49 GVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRL 108
Query: 76 AAGACAGMTSTFVTYPLDVLRLRLAVEP------GYQTMSQVALNMLREEGFSSFYHGLG 129
AG+ G + V P DV+++R + YQ+ + + REEG + G
Sbjct: 109 LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 130 PALIGIAPYIAVNFCIFDLVKKALPEKYRQKTQTSL-LTAVVSAG-VATLTCYPLDTIR- 186
P + A +DL+K L + T+ AG T+ P+D ++
Sbjct: 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKT 228
Query: 187 RQMQMKGTPYKSVIDAFAGIVERDGVTGLYRGFVPNALKTLPNSSIRLTTFDIVKRII 244
R M Y S ++ ++G Y+GF+P+ L+ + + T++ +KR +
Sbjct: 229 RYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 165 LLTAVVSAGVATLTCYPLDTIRRQMQMKG-----------TPYKSVIDAFAGIVERDGVT 213
L A +A +A L +PLDT + ++Q++G Y+ V+ +V +G
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 214 GLYRGFVPNALKTLPNSSIRLTTFDIVKRIIA-GSE 248
LY G V + + +S+R+ +D VK+ GSE
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE 100
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 80 CAGMTSTFVTYPLDVLRLRLAVEPGYQTMSQVALNMLREEGFSSFY 125
C G S F TY LR +P Y + Q+ N+ +GFS Y
Sbjct: 241 CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDY 286
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 80 CAGMTSTFVTYPLDVLRLRLAVEPGYQTMSQVALNMLREEGFSSFY 125
C G S F TY LR +P Y + Q+ N+ +GFS Y
Sbjct: 243 CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDY 288
>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
Length = 296
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 80 CAGMTSTFVTYPLDVLRLRLAVEPGYQTMSQVALNMLREEGFSSFY 125
C G S F TY LR +P Y + Q+ N+ +GFS Y
Sbjct: 243 CKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDY 288
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 EAITLIAKEEGIKGYWKGNLPQVIRVLPYS-AVQL 52
E I LI+KE G G+WKG L V P + AVQ+
Sbjct: 29 EIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,293,959
Number of Sequences: 62578
Number of extensions: 284104
Number of successful extensions: 668
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 19
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)