Query 039878
Match_columns 269
No_of_seqs 164 out of 1865
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.9E-52 9.8E-57 356.0 20.2 252 2-253 25-295 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.1E-50 7.1E-55 343.6 23.6 242 2-244 31-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 7.8E-36 2.7E-40 253.7 17.7 178 69-246 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.6E-35 5.6E-40 252.3 15.1 174 74-247 4-195 (303)
5 3f2e_A SIRV coat protein; four 58.2 4 0.00014 26.0 1.3 39 189-227 1-43 (100)
6 3tgu_G UQCRQ, mitochondrial ub 42.1 16 0.00055 23.7 2.3 33 212-244 34-66 (81)
7 2acm_A Mucin-1; auto-catalytic 27.6 13 0.00046 22.3 0.1 20 15-34 40-59 (66)
8 1pp9_G Ubiquinol-cytochrome C 26.6 33 0.0011 22.2 1.8 35 211-245 33-67 (81)
9 3uv4_A Second bromodomain of h 22.4 1.1E+02 0.0038 22.3 4.3 80 177-262 66-145 (158)
10 3cx5_H Cytochrome B-C1 complex 20.9 1.1E+02 0.0037 20.3 3.5 38 210-247 42-79 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.9e-52 Score=355.96 Aligned_cols=252 Identities=19% Similarity=0.373 Sum_probs=228.2
Q ss_pred cccccccccc----------cccCcHHHHHHHHHHhhCccccccCchHHHHHHhhhhhhHHhhhHHHHHhhcCCCCCCch
Q 039878 2 HSIRVGQESA----------KKAIGFIEAITLIAKEEGIKGYWKGNLPQVIRVLPYSAVQLFAYETYKKLFKGKDGELSV 71 (269)
Q Consensus 2 ~~~r~~~~~~----------~~~~~~~~~~~~i~~~eGi~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (269)
.|+|+|.+.. ..|.++++++++|+++||++|||||+.|++++.++..+++|.+|+.+++.+.+.....+.
T Consensus 25 iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~ 104 (303)
T 2lck_A 25 AKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGI 104 (303)
T ss_dssp HHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCH
T ss_pred HHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcH
Confidence 5888888743 368999999999999999999999999999999999999999999999988765335678
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC------CCCCHHHHHHHHHHhhCccccccchhhhhhhhhhhhhHHHHH
Q 039878 72 IGRLAAGACAGMTSTFVTYPLDVLRLRLAVEP------GYQTMSQVALNMLREEGFSSFYHGLGPALIGIAPYIAVNFCI 145 (269)
Q Consensus 72 ~~~~~~g~~a~~~~~~i~~Ple~ik~r~q~~~------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ 145 (269)
...+++|++||+++.++++|+|++|+|+|++. .|.+.++++++|++++|++|||+|+.+++++++++.+++|.+
T Consensus 105 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ 184 (303)
T 2lck_A 105 GSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184 (303)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999975 588999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhh--hhhhhhhHHHHHHHHHHhhhhhChHHHHHHHHhhCCC-CCCCHHHHHHHHHHhhCccccccchHHH
Q 039878 146 FDLVKKALPEKY--RQKTQTSLLTAVVSAGVATLTCYPLDTIRRQMQMKGT-PYKSVIDAFAGIVERDGVTGLYRGFVPN 222 (269)
Q Consensus 146 y~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~-~~~~~~~~~~~i~~~~G~~~ly~G~~~~ 222 (269)
||.+++.+.+.. ..+....+++|++||++++++++|+|+||+|+|.+.. .|+++++|+++++++||++|||||+.++
T Consensus 185 ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~ 264 (303)
T 2lck_A 185 YDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPS 264 (303)
T ss_dssp HHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHH
T ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHH
Confidence 999999886543 2344567899999999999999999999999999854 6999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHccchhhhhh
Q 039878 223 ALKTLPNSSIRLTTFDIVKRIIAGSEKEFQR 253 (269)
Q Consensus 223 ~~~~~~~~~i~~~iye~~~~~~~~~~~~~~~ 253 (269)
++|.+|.++++|.+||.+++.+.+..+...+
T Consensus 265 ~~r~~p~~~i~f~~ye~~k~~l~~~~~~~~~ 295 (303)
T 2lck_A 265 FLRLGSWNVVMFVTYEQLKRALMAAYQSREA 295 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999988765554433
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.1e-50 Score=343.61 Aligned_cols=242 Identities=30% Similarity=0.565 Sum_probs=213.4
Q ss_pred cccccccccc-------cccCcHHHHHHHHHHhhCccccccCchHHHHHHhhhhhhHHhhhHHHHHhh-cCCCCCC----
Q 039878 2 HSIRVGQESA-------KKAIGFIEAITLIAKEEGIKGYWKGNLPQVIRVLPYSAVQLFAYETYKKLF-KGKDGEL---- 69 (269)
Q Consensus 2 ~~~r~~~~~~-------~~~~~~~~~~~~i~~~eGi~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 69 (269)
.|+|+|.|.. ..|.++++++++|+++||++|||||+.|++++.++..+++|.+|+.+++.+ ...+...
T Consensus 31 vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~ 110 (297)
T 1okc_A 31 VKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR 110 (297)
T ss_dssp HHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHH
T ss_pred HHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHH
Confidence 5888888742 368999999999999999999999999999999999999999999999854 3322221
Q ss_pred chHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC-------CCCCHHHHHHHHHHhhCccccccchhhhhhhhhhhhhHH
Q 039878 70 SVIGRLAAGACAGMTSTFVTYPLDVLRLRLAVEP-------GYQTMSQVALNMLREEGFSSFYHGLGPALIGIAPYIAVN 142 (269)
Q Consensus 70 ~~~~~~~~g~~a~~~~~~i~~Ple~ik~r~q~~~-------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 142 (269)
+....+++|++||+++.++++|+|++|+|+|++. .|.+.++++++|+++||++|||+|+.+++++.+++.+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999873 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhhhhChHHHHHHHHhhCCC------CCCCHHHHHHHHHHhhCccccc
Q 039878 143 FCIFDLVKKALPEKYRQKTQTSLLTAVVSAGVATLTCYPLDTIRRQMQMKGT------PYKSVIDAFAGIVERDGVTGLY 216 (269)
Q Consensus 143 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~------~~~~~~~~~~~i~~~~G~~~ly 216 (269)
|.+||.+++.+.+....+....+++|+++|++++++++|+|+||+|+|.+.. .|+++++|+++++++||++|||
T Consensus 191 f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly 270 (297)
T 1okc_A 191 FGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF 270 (297)
T ss_dssp HHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEe
Confidence 9999999998866555556677899999999999999999999999998742 5899999999999999999999
Q ss_pred cchHHHHhhhhhhhHHHHHHHHHHHHHH
Q 039878 217 RGFVPNALKTLPNSSIRLTTFDIVKRII 244 (269)
Q Consensus 217 ~G~~~~~~~~~~~~~i~~~iye~~~~~~ 244 (269)
||+.++++|. +.++++|.+||.+++.+
T Consensus 271 rG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 271 KGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred cchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999996 57899999999988653
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.8e-36 Score=253.67 Aligned_cols=178 Identities=23% Similarity=0.374 Sum_probs=160.2
Q ss_pred CchHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC---------CCCCHHHHHHHHHHhhCccccccchhhhhhhhhhhh
Q 039878 69 LSVIGRLAAGACAGMTSTFVTYPLDVLRLRLAVEP---------GYQTMSQVALNMLREEGFSSFYHGLGPALIGIAPYI 139 (269)
Q Consensus 69 ~~~~~~~~~g~~a~~~~~~i~~Ple~ik~r~q~~~---------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 139 (269)
.+....+++|++||+++.++++|+|++|+|+|++. .|++.++++++++++||++|||||+.+++++.+++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678899999999999999999999999999863 478999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc-hhhhh-----hhhhhhHHHHHHHHHHhhhhhChHHHHHHHHhhCC------CCCCCHHHHHHHHH
Q 039878 140 AVNFCIFDLVKKAL-PEKYR-----QKTQTSLLTAVVSAGVATLTCYPLDTIRRQMQMKG------TPYKSVIDAFAGIV 207 (269)
Q Consensus 140 ~~~~~~y~~~~~~~-~~~~~-----~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~------~~~~~~~~~~~~i~ 207 (269)
+++|.+||.+++.+ ..... .+....+++|++||++++++++|+|+||+|+|.+. ..|+++++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999853 22111 12345789999999999999999999999999874 35889999999999
Q ss_pred HhhCccccccchHHHHhhhhhhhHHHHHHHHHHHHHHcc
Q 039878 208 ERDGVTGLYRGFVPNALKTLPNSSIRLTTFDIVKRIIAG 246 (269)
Q Consensus 208 ~~~G~~~ly~G~~~~~~~~~~~~~i~~~iye~~~~~~~~ 246 (269)
++||++|||||+.++++|.+|.++++|.+||.+++.+.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999997754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.6e-35 Score=252.34 Aligned_cols=174 Identities=24% Similarity=0.474 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHhcCC------------CCCCHHHHHHHHHHhhCccccccchhhhhhhhhhhhhH
Q 039878 74 RLAAGACAGMTSTFVTYPLDVLRLRLAVEP------------GYQTMSQVALNMLREEGFSSFYHGLGPALIGIAPYIAV 141 (269)
Q Consensus 74 ~~~~g~~a~~~~~~i~~Ple~ik~r~q~~~------------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 141 (269)
.+++|++||+++.++++|+|++|+|+|++. .|++.++++++++++||+++||+|+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999864 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhh-hhhhhhhhHHHHHHHHHHhhhhhChHHHHHHHHhhCCC-----CCCCHHHHHHHHHHhhCcccc
Q 039878 142 NFCIFDLVKKALPEK-YRQKTQTSLLTAVVSAGVATLTCYPLDTIRRQMQMKGT-----PYKSVIDAFAGIVERDGVTGL 215 (269)
Q Consensus 142 ~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~-----~~~~~~~~~~~i~~~~G~~~l 215 (269)
+|.+||.+++.+.+. ...+....+++|++||+++.++++|+|+||+|+|.+.. .|.++++++++++++||++||
T Consensus 84 ~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl 163 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163 (303)
T ss_dssp TTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhh
Confidence 999999999987553 23445678899999999999999999999999999863 689999999999999999999
Q ss_pred ccchHHHHhhhhhhhHHHHHHHHHHHHHHccc
Q 039878 216 YRGFVPNALKTLPNSSIRLTTFDIVKRIIAGS 247 (269)
Q Consensus 216 y~G~~~~~~~~~~~~~i~~~iye~~~~~~~~~ 247 (269)
|||+.++++|.+|..+++|.+||.+++.+.+.
T Consensus 164 yrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988654
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=58.16 E-value=4 Score=25.99 Aligned_cols=39 Identities=26% Similarity=0.566 Sum_probs=26.0
Q ss_pred HhhCCCCCCCHHHHHHHHHHhhCccc----cccchHHHHhhhh
Q 039878 189 MQMKGTPYKSVIDAFAGIVERDGVTG----LYRGFVPNALKTL 227 (269)
Q Consensus 189 ~q~~~~~~~~~~~~~~~i~~~~G~~~----ly~G~~~~~~~~~ 227 (269)
||++-+++.++-+-+..++.+-|+.| +|+|++....|..
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 46666777888888888899988765 8999998777654
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=42.11 E-value=16 Score=23.66 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=24.5
Q ss_pred ccccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Q 039878 212 VTGLYRGFVPNALKTLPNSSIRLTTFDIVKRII 244 (269)
Q Consensus 212 ~~~ly~G~~~~~~~~~~~~~i~~~iye~~~~~~ 244 (269)
+-..+|-+..+++..+|..++...+|++..+.-
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 334445555678888999999999999987744
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=27.55 E-value=13 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHhhCccccc
Q 039878 15 IGFIEAITLIAKEEGIKGYW 34 (269)
Q Consensus 15 ~~~~~~~~~i~~~eGi~gly 34 (269)
+++...+-.||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999999986
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.60 E-value=33 Score=22.18 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=26.8
Q ss_pred CccccccchHHHHhhhhhhhHHHHHHHHHHHHHHc
Q 039878 211 GVTGLYRGFVPNALKTLPNSSIRLTTFDIVKRIIA 245 (269)
Q Consensus 211 G~~~ly~G~~~~~~~~~~~~~i~~~iye~~~~~~~ 245 (269)
|+...+|-+..+++..+|..++...+|++..+.-+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 45555666777778889999999999999877543
No 9
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=22.35 E-value=1.1e+02 Score=22.30 Aligned_cols=80 Identities=8% Similarity=0.099 Sum_probs=39.2
Q ss_pred hhhChHHHHHHHHhhCCCCCCCHHHHHHHHHHhhCccccccchHHHHhhhhhhhHHHHHHHHHHHHHHccchhhhhhccH
Q 039878 177 LTCYPLDTIRRQMQMKGTPYKSVIDAFAGIVERDGVTGLYRGFVPNALKTLPNSSIRLTTFDIVKRIIAGSEKEFQRITE 256 (269)
Q Consensus 177 ~~~~P~d~v~~r~q~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~iye~~~~~~~~~~~~~~~~~~ 256 (269)
++..|.|.-..+--+....|.++-++..++..----.-.|-|- ........-.+.+.+.+.+.+......+..+
T Consensus 66 iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~------~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~ 139 (158)
T 3uv4_A 66 VIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP------ESQYTKTAQEIVNVCYQTLTEYDEHLTQLEK 139 (158)
T ss_dssp HCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776544444445567888877776652211111122221 1122233334455555666666555555544
Q ss_pred Hhhhhh
Q 039878 257 ENRKKQ 262 (269)
Q Consensus 257 ~~~~~~ 262 (269)
+..+.+
T Consensus 140 ~i~~~~ 145 (158)
T 3uv4_A 140 DICTAK 145 (158)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=20.87 E-value=1.1e+02 Score=20.27 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=29.7
Q ss_pred hCccccccchHHHHhhhhhhhHHHHHHHHHHHHHHccc
Q 039878 210 DGVTGLYRGFVPNALKTLPNSSIRLTTFDIVKRIIAGS 247 (269)
Q Consensus 210 ~G~~~ly~G~~~~~~~~~~~~~i~~~iye~~~~~~~~~ 247 (269)
.|+...+|-+..+++..+|..++...+|++..+.-+..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 46667777788888888999999999999988754433
Done!