Query 039881
Match_columns 315
No_of_seqs 196 out of 532
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 1.1E-42 3.8E-47 329.2 10.0 253 16-300 19-305 (306)
2 2o95_A 26S proteasome non-ATPa 99.9 1E-27 3.5E-32 211.4 12.6 149 18-187 4-178 (187)
3 4e0q_A COP9 signalosome comple 99.9 4.2E-26 1.4E-30 193.2 4.7 112 19-136 3-138 (141)
4 4b4t_U RPN8, 26S proteasome re 99.9 4E-22 1.4E-26 190.9 14.7 147 20-187 4-176 (338)
5 2znr_A AMSH-like protease; met 99.8 2.4E-19 8.1E-24 157.2 7.6 124 18-153 5-153 (178)
6 3rzv_A STAM-binding protein; u 99.7 2E-17 6.8E-22 148.3 10.3 122 20-153 40-186 (211)
7 2kks_A Uncharacterized protein 99.3 5.7E-12 1.9E-16 106.5 10.4 103 24-137 2-124 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 99.3 2.9E-12 1E-16 109.1 7.8 101 25-137 2-126 (153)
9 1oi0_A AF2198, hypothetical pr 99.0 6E-10 2E-14 91.5 7.8 98 23-136 3-111 (124)
10 2og4_A PRE-mRNA-splicing facto 98.3 1E-06 3.4E-11 80.4 7.0 67 76-147 108-175 (254)
11 2p8r_A PRP8, PRE-mRNA-splicing 98.2 2.3E-06 8E-11 78.8 6.7 66 76-146 107-177 (273)
12 3sbg_A PRE-mRNA-splicing facto 96.8 0.0018 6.1E-08 64.1 6.9 68 76-148 419-487 (565)
13 2rh2_A Dihydrofolate reductase 40.1 9.6 0.00033 26.0 1.0 10 79-88 25-34 (62)
14 3plv_C 66 kDa U4/U6.U5 small n 29.1 37 0.0013 18.8 2.1 16 247-262 6-21 (21)
15 2f6m_A Suppressor protein STP2 21.5 1.1E+02 0.0039 21.6 4.0 35 205-239 16-50 (65)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=329.24 Aligned_cols=253 Identities=18% Similarity=0.239 Sum_probs=173.3
Q ss_pred cCCCCcceEEEeHhHHHHHHhhhhccCCccccC--------------------CCCCCcc-chhhhhhHHHHHHHHHHhc
Q 039881 16 NAPPALQVVQIEGLVLLKIIKHCKDLSPSWLRQ--------------------ENDIDQE-TDDIGANYQLDMMSCLRDA 74 (315)
Q Consensus 16 ~~~~~~~~V~I~~lvllKIikH~~~~~~~~V~G--------------------p~~~~~~-~~~~~~~Yq~~Ml~~l~~v 74 (315)
.++.++++|+|+++|||||+|||+++.|.+||| |++++++ +++.+..||.+|+++++++
T Consensus 19 ~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v 98 (306)
T 4b4t_V 19 GRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQT 98 (306)
T ss_dssp CCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHh
Confidence 446789999999999999999999999999999 5554444 5677889999999999999
Q ss_pred CCCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEechhhHhhhhc--------
Q 039881 75 NVDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKLSDTFLELYRN-------- 146 (315)
Q Consensus 75 n~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~~k~-------- 146 (315)
|+++++||||||||+.+||+|+.||+||+.||...+++|+|||||.+|.+ |+++++|||++|.++.....
T Consensus 99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~--G~~~i~Afr~~~~~~~~~~~~~~~~~s~ 176 (306)
T 4b4t_V 99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK--GKVVIDAFRLIDTGALINNLEPRQTTSN 176 (306)
T ss_dssp SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSS--CSSCEEEEECCHHHHHHCCCCCSCC---
T ss_pred CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCC--CceeeeEEEecCccccccccCccccccc
Confidence 99999999999999999999999999999999999999999999999988 99999999999998776543
Q ss_pred -CCCCccccccccccccceeEEEeeeEeccHHHHHHHhccCCCCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHhHHHH
Q 039881 147 -GNFSGESLRDKNISWADVFEEITIRVSNSALVSAFMSTLEPDRVTDQSDHDRLQISSKPLLESNVEFLIRCMDDLSTEQ 225 (315)
Q Consensus 147 -g~~~~e~l~~~~l~~~~if~EIPi~I~ns~L~~~~L~~L~~~~~~~~~~~d~L~Ls~~~~Lek~l~~L~e~id~l~~e~ 225 (315)
|.+..+.+.+.+.++.+.||+|||+++++.|++.+|..|++..+. -+|+..++ .++.+...+++.++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~-------~~l~~~~~-~~~~~~~~~~i~~m~~-- 246 (306)
T 4b4t_V 177 TGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ-------SGLKMYDY-EEKEESNLAATKSMVK-- 246 (306)
T ss_dssp -------------------CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS--
T ss_pred ccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc-------cccccCcH-HHHHHHHHHHHHHHHH--
Confidence 334556677777788899999999999999999999999764322 22333222 2333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC----cchHHHHHHHHHHHHHHHHHHHHh
Q 039881 226 KKLKFYFKDVTRQQAWVQERRDENEARKAAGEDPLPEGDSSNPFFKPIPEP----SRLESLLITNRIADYCNQIHRVAG 300 (315)
Q Consensus 226 ~~~~~yqr~l~r~q~~~~kr~~EN~~R~~~g~~~lpe~d~~~~~fk~~~~P----srl~~ll~s~qi~~~~~~i~~~~~ 300 (315)
....|.+.+..++ +.. +++-..+ ......++ ...+.|+.++-++.+|-.|+.++.
T Consensus 247 -~~~~y~k~v~~e~-----~~~-~~~l~~~-------------~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~~~ 305 (306)
T 4b4t_V 247 -IAEQYSKRIEEEK-----ELT-EEELKTR-------------YVGRQDPKKHLSETADETLENNIVSVLTAGVNSVAI 305 (306)
T ss_dssp -CHHHHHHHHHHHH-----HHH-HHHHHHT-------------CSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccc-----cCC-HHHHHhh-------------ccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 1223444443222 111 1111111 11112233 335889999999999999998764
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.95 E-value=1e-27 Score=211.36 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=121.9
Q ss_pred CCCcceEEEeHhHHHHHHhhhhcc----CCccccC-------------------CCCCCcc---chhhhhhHHHHHHHHH
Q 039881 18 PPALQVVQIEGLVLLKIIKHCKDL----SPSWLRQ-------------------ENDIDQE---TDDIGANYQLDMMSCL 71 (315)
Q Consensus 18 ~~~~~~V~I~~lvllKIikH~~~~----~~~~V~G-------------------p~~~~~~---~~~~~~~Yq~~Ml~~l 71 (315)
..++++|+|+|+|+|||++||.+. .|.+|+| |++++++ ....+.+|+.+|++++
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~ 83 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMF 83 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHH
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHH
Confidence 357889999999999999999875 7899999 4433222 2256778999999999
Q ss_pred HhcCCCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEechhhHhhhhcCCCCc
Q 039881 72 RDANVDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKLSDTFLELYRNGNFSG 151 (315)
Q Consensus 72 ~~vn~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~~k~g~~~~ 151 (315)
+++|+++++||||||||.++ ..++.++..||...+++|+||+||.++.+ | +.++|||+++.+.+
T Consensus 84 ~~v~~~~~iVGWY~s~~~~s----~~d~~i~~~~~~~~~~~v~Livd~~~~~~--~-l~i~ay~~~~~~~~--------- 147 (187)
T 2o95_A 84 KKVNARERIVGWYHTGPKLH----KNDIAINELMKRYCPNSVLVIIDVKPKDL--G-LPTEAYISVEEVHD--------- 147 (187)
T ss_dssp HTTSSSCEEEEEEECCSSCC----TTHHHHHHHHTTTCTTCEEEEECCCTTC---C-CSEEEEEEEEECC----------
T ss_pred HHhCCCCCEEEEEcCCCcCC----cccHHHHHHHHhcCCCCEEEEECCCCCCC--C-cCeEEEEEechhcC---------
Confidence 99999999999999999876 45556666788888999999999998754 5 99999999877532
Q ss_pred cccccccccccceeEEEeeeEeccHHHHHHHhccCC
Q 039881 152 ESLRDKNISWADVFEEITIRVSNSALVSAFMSTLEP 187 (315)
Q Consensus 152 e~l~~~~l~~~~if~EIPi~I~ns~L~~~~L~~L~~ 187 (315)
.+.++.++|.|||++|.++..+++.++.|..
T Consensus 148 -----~~~~~~~~F~~ip~~I~~~eaE~i~v~~l~~ 178 (187)
T 2o95_A 148 -----DGTPTSKTFEHVTSEIGAEEAEEVGVEHLLR 178 (187)
T ss_dssp --------CCEEEEEEEEEEECCCHHHHHHHHHHHH
T ss_pred -----CCCcccCEEEEeeEEEecCcHHHHHHHHHHh
Confidence 2455788999999999999999999998854
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.92 E-value=4.2e-26 Score=193.19 Aligned_cols=112 Identities=14% Similarity=0.221 Sum_probs=90.2
Q ss_pred CCcceEEEeHhHHHHHHhhhhcc-----CCccccC-------------------CCCCCccchhhhhhHHHHHHHHHHhc
Q 039881 19 PALQVVQIEGLVLLKIIKHCKDL-----SPSWLRQ-------------------ENDIDQETDDIGANYQLDMMSCLRDA 74 (315)
Q Consensus 19 ~~~~~V~I~~lvllKIikH~~~~-----~~~~V~G-------------------p~~~~~~~~~~~~~Yq~~Ml~~l~~v 74 (315)
.+..+|+|||+|||||+|||.+. .+.+|+| |.+++++....+.+|+.+|++++++|
T Consensus 3 ~~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v 82 (141)
T 4e0q_A 3 HMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQV 82 (141)
T ss_dssp --CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHh
Confidence 45679999999999999999874 4679999 55444443467899999999999999
Q ss_pred CCCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEe
Q 039881 75 NVDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKL 136 (315)
Q Consensus 75 n~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRl 136 (315)
|+++++||||||+|. ++..++..+..|+..++++|+|++||.++.+ |+|+++||+.
T Consensus 83 ~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~--g~Lp~~ay~s 138 (141)
T 4e0q_A 83 FSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRSV--DHLPLKLFES 138 (141)
T ss_dssp STTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCCC--TTHHHHHHCC
T ss_pred CCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccCC--CeEEEEEEEE
Confidence 999999999999984 6688888888888888999999999999887 8999999975
No 4
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4e-22 Score=190.85 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=115.2
Q ss_pred CcceEEEeHhHHHHHHhhhhcc---CCccccC-------------------CCCCCcc---chhhhhhHHHHHHHHHHhc
Q 039881 20 ALQVVQIEGLVLLKIIKHCKDL---SPSWLRQ-------------------ENDIDQE---TDDIGANYQLDMMSCLRDA 74 (315)
Q Consensus 20 ~~~~V~I~~lvllKIikH~~~~---~~~~V~G-------------------p~~~~~~---~~~~~~~Yq~~Ml~~l~~v 74 (315)
..++|.|||+|||+|++||.+. .+.+|+| |.+++++ +.+.+..|+.+|++++++|
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV 83 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKI 83 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhc
Confidence 4578999999999999999863 3568999 5433222 3456899999999999999
Q ss_pred CCCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcC-CCeEEEEeCCCCCccCCCceeeeEEEechhhHhhhhcCCCCccc
Q 039881 75 NVDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENI-GKCVCIICDPSRSNIQGGLAGLKALKLSDTFLELYRNGNFSGES 153 (315)
Q Consensus 75 n~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~-~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~~k~g~~~~e~ 153 (315)
|+++.+||||+|++..+ ..++..+..|.... +.+|+|++|+... +|.++++||+..+...
T Consensus 84 ~~~e~iVGWY~tg~~~~----~~d~~Ih~~~~~~~~~~pi~l~~d~~~~---~~~lpi~aY~s~~~~~------------ 144 (338)
T 4b4t_U 84 NAKEKLIGWYHSGPKLR----ASDLKINELFKKYTQNNPLLLIVDVKQQ---GVGLPTDAYVAIEQVK------------ 144 (338)
T ss_dssp CCSCEEEEEEECCSSCC----STHHHHHHHHGGGCCSCCCEEEECSCCC---SSSCSEEEEEEEEECS------------
T ss_pred CccCCEEEEEecCCCCC----ccHHHHHHHHHhccCCCcEEEEecCCCC---CCCcceEEEEeehhcc------------
Confidence 99999999999998643 44555555555555 5789999999763 4889999998876532
Q ss_pred cccccccccceeEEEeeeEeccHHHHHHHhccCC
Q 039881 154 LRDKNISWADVFEEITIRVSNSALVSAFMSTLEP 187 (315)
Q Consensus 154 l~~~~l~~~~if~EIPi~I~ns~L~~~~L~~L~~ 187 (315)
..+.....+|.+||++|.....+++.++.+..
T Consensus 145 --~~~~~~~~~F~~lp~~i~~~eaE~Igv~~l~r 176 (338)
T 4b4t_U 145 --DDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLR 176 (338)
T ss_dssp --SCSTTCEEEEEEECEEECSCHHHHHHHHHHHH
T ss_pred --CCCcccccEEEEeeeEeecCcHHHHHHHHHHh
Confidence 22344567899999999999999999988753
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.78 E-value=2.4e-19 Score=157.20 Aligned_cols=124 Identities=14% Similarity=0.229 Sum_probs=97.0
Q ss_pred CCCcceEEEeHhHHHHHHhhhhccCC--ccccC-------------------CCCCCcc-chhhhhhHHHHHHHHHHhcC
Q 039881 18 PPALQVVQIEGLVLLKIIKHCKDLSP--SWLRQ-------------------ENDIDQE-TDDIGANYQLDMMSCLRDAN 75 (315)
Q Consensus 18 ~~~~~~V~I~~lvllKIikH~~~~~~--~~V~G-------------------p~~~~~~-~~~~~~~Yq~~Ml~~l~~vn 75 (315)
..+++.|.|...++.||++||.++.| .+|+| |+.++.+ ....+. .++++. ..+
T Consensus 5 ~~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~---~e~~~~--~~~ 79 (178)
T 2znr_A 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENV---EELFNV--QDQ 79 (178)
T ss_dssp CCSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCH---HHHHHH--HHH
T ss_pred cCCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCH---HHHHHH--HHh
Confidence 35689999999999999999998754 68998 2222222 221211 122222 235
Q ss_pred CCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEechhhHhh---hhcCCCCcc
Q 039881 76 VDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKLSDTFLEL---YRNGNFSGE 152 (315)
Q Consensus 76 ~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~---~k~g~~~~e 152 (315)
.+..+||||||||...||+|..||++|+.||...+++|+||+||.+ +. ++|||++|.+++. ++++.|.++
T Consensus 80 ~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~-----~~--~~afrl~~~g~~~~~~~~~~~f~p~ 152 (178)
T 2znr_A 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKH-----KD--TGIFRLTNAGMLEVSACKKKGFHPH 152 (178)
T ss_dssp HTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGG-----TE--EEEEEECHHHHHHHHHCCCCSSCCC
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCC-----Cc--ceEEEEECCcEeeecccCCCCcccC
Confidence 7889999999999999999999999999999999999999999976 22 7999999999888 677779886
Q ss_pred c
Q 039881 153 S 153 (315)
Q Consensus 153 ~ 153 (315)
.
T Consensus 153 ~ 153 (178)
T 2znr_A 153 T 153 (178)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.71 E-value=2e-17 Score=148.32 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=94.1
Q ss_pred CcceEEEeHhHHHHHHhhhhccC--CccccC-------------------CCCCCcc-chhhhhhHHHHHHHHHHhcCCC
Q 039881 20 ALQVVQIEGLVLLKIIKHCKDLS--PSWLRQ-------------------ENDIDQE-TDDIGANYQLDMMSCLRDANVD 77 (315)
Q Consensus 20 ~~~~V~I~~lvllKIikH~~~~~--~~~V~G-------------------p~~~~~~-~~~~~~~Yq~~Ml~~l~~vn~d 77 (315)
.+..|.|...++-||+.|+..+. +.+|+| |..++++ +...+...+-+.+ .. .+
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~---~~--~~ 114 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQ---DQ--QG 114 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHH---HH--HT
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHH---hh--CC
Confidence 46899999999999999999874 478888 2222222 2222211111111 11 58
Q ss_pred CcceeEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEechhhHh---hhhcCCCCccc
Q 039881 78 SNVVGWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKLSDTFLE---LYRNGNFSGES 153 (315)
Q Consensus 78 ~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~---~~k~g~~~~e~ 153 (315)
..+||||||||...||+|..||++|+.||.+.+++|+||+||.+ .+++|||++|.+++ .+++..|.++.
T Consensus 115 l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~-------~~lgaFrLtp~G~~~~~~c~~~~fhph~ 186 (211)
T 3rzv_A 115 LITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF-------QETGFFKLTDHGLEEISSCRQKGFHPHS 186 (211)
T ss_dssp CEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT-------TEEEEEEECHHHHHHHHHCCCCSSCCCC
T ss_pred CEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-------CeeeEEEeccchhhhhhccccCCcccCC
Confidence 89999999999999999999999999999999999999999964 26999999999987 66777798864
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.33 E-value=5.7e-12 Score=106.46 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred EEEeHhHHHHHHhhhhccCCccccC-------------------CCCCCccc-hhhhhhHHHHHHHHHHhcCCCCcceeE
Q 039881 24 VQIEGLVLLKIIKHCKDLSPSWLRQ-------------------ENDIDQET-DDIGANYQLDMMSCLRDANVDSNVVGW 83 (315)
Q Consensus 24 V~I~~lvllKIikH~~~~~~~~V~G-------------------p~~~~~~~-~~~~~~Yq~~Ml~~l~~vn~d~~~VGW 83 (315)
|.|+..++.+|++|++++.|.+++| |....+.. -..+...+..+.+.++. .+..+|||
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~--~g~~ivG~ 79 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK--NGWVMLGN 79 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH--HTCEEEEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH--CCCEEEEE
Confidence 6799999999999999999999998 11111111 11234445555555544 34689999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEec
Q 039881 84 YQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKLS 137 (315)
Q Consensus 84 Y~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRls 137 (315)
|||||.+.||+|..|+.++. .++.+.+|+.+.. ++...++|||+.
T Consensus 80 ~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~----~~~~~~~af~~~ 124 (146)
T 2kks_A 80 FHSHPATPARPSAEDKRLAF-----DPSLSYLIISLAE----PQKPVCKSFLIK 124 (146)
T ss_dssp EEEESSSCSSCCHHHHTTCC-----SSSCEEEEEECSC----SSSCEEEEEEEC
T ss_pred EeCCCcCCCCCCHHHHHhhh-----cCCCeEEEEEccC----CCceEEEEEEEe
Confidence 99999999999999998642 2678899998754 145789999983
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.31 E-value=2.9e-12 Score=109.05 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=72.5
Q ss_pred EEeHhHHHHHHhhhhccCCccccC--------------------CCC--CCccch-hhhhhHHHHHHHHHHhcCCCCcce
Q 039881 25 QIEGLVLLKIIKHCKDLSPSWLRQ--------------------END--IDQETD-DIGANYQLDMMSCLRDANVDSNVV 81 (315)
Q Consensus 25 ~I~~lvllKIikH~~~~~~~~V~G--------------------p~~--~~~~~~-~~~~~Yq~~Ml~~l~~vn~d~~~V 81 (315)
.|+..++.+|++|++++.|.+++| |.. ++.... ..+..-+..+.+.+++- +..+|
T Consensus 2 ~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~--g~~iv 79 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQ--GLDVV 79 (153)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHH--TCEEE
T ss_pred EeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHC--CCeEE
Confidence 578899999999999999999998 111 110111 11223344555555443 57899
Q ss_pred eEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCc-eeeeEEEec
Q 039881 82 GWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGL-AGLKALKLS 137 (315)
Q Consensus 82 GWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~-lslkAfRls 137 (315)
|||||||.+.||+|..|+..+ ..+++++||+.+.. |+ ..++|||++
T Consensus 80 G~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~-----~~~~~~~af~~~ 126 (153)
T 2kcq_A 80 GVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVRD-----GAPEALTAWALA 126 (153)
T ss_dssp EEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEET-----TEEEEEEEEEEC
T ss_pred EEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECCC-----CCccEEEEEEEe
Confidence 999999999999999999653 23678999998643 55 579999995
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.01 E-value=6e-10 Score=91.46 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=65.7
Q ss_pred eEEEeHhHHHHHHhhhhccCCccccCCCCCC-----------ccchhhhhhHHHHHHHHHHhcCCCCcceeEEecCCCCC
Q 039881 23 VVQIEGLVLLKIIKHCKDLSPSWLRQENDID-----------QETDDIGANYQLDMMSCLRDANVDSNVVGWYQSTPPGD 91 (315)
Q Consensus 23 ~V~I~~lvllKIikH~~~~~~~~V~Gp~~~~-----------~~~~~~~~~Yq~~Ml~~l~~vn~d~~~VGWY~S~~~g~ 91 (315)
.|.|...++.+|++|++++.|.+++|-.-+. .........|+.+|.. .+..+||||||||.+.
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~~v~~~~~~p~~~~~~~~~f~~~~~~------~~~~ivG~~HSHP~~~ 76 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPFVSGSVSAVIHLDMLP------IGMKVFGTVHSHPSPS 76 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTTEECEEEECCCCC-------------------CCCEEEEEEEEESSSC
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccCEEEEEEECCCCCCCcCceeeeeecc------CCCEEEEEEEECcCCC
Confidence 3789999999999999999999999911000 0001122345555544 5688999999999999
Q ss_pred CCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEe
Q 039881 92 CFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKL 136 (315)
Q Consensus 92 ~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRl 136 (315)
||+|..|+.++.. ...+.||+.+.. +.-.++||+.
T Consensus 77 ~~PS~~D~~~~~~-----~~~~~lIvs~~~-----~~~~~~~f~~ 111 (124)
T 1oi0_A 77 CRPSEEDLSLFTR-----FGKYHIIVCYPY-----DENSWKCYNR 111 (124)
T ss_dssp CSCCHHHHHHHHH-----SCSEEEEEETTC-----CTTCEEEEET
T ss_pred CccCHHHHHhhhc-----CCCEEEEEEccC-----CCceEEEEec
Confidence 9999999987652 567888888633 3346788865
No 10
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1e-06 Score=80.42 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcC-CCeEEEEeCCCCCccCCCceeeeEEEechhhHhhhhcC
Q 039881 76 VDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENI-GKCVCIICDPSRSNIQGGLAGLKALKLSDTFLELYRNG 147 (315)
Q Consensus 76 ~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~-~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~~k~g 147 (315)
.|-..+||-|++|...||+|+.||.|+..||.+. +++|+||+-+.. |..++.||||++.+++=.+++
T Consensus 108 ~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftp-----gs~sl~af~LT~~G~~Wg~~n 175 (254)
T 2og4_A 108 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTP-----GSVSLSAYNLTDEGYQWGEEN 175 (254)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEET-----TEEEEEEEEECHHHHHHHHTC
T ss_pred cCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCceeEEEEcChhhhhhhhhc
Confidence 4557899999999999999999999999999844 899999998755 999999999999998755544
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.17 E-value=2.3e-06 Score=78.75 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=57.0
Q ss_pred CCCcceeEEecCCCCCCCCCHHHHHHHHhhhhc---C--CCeEEEEeCCCCCccCCCceeeeEEEechhhHhhhhc
Q 039881 76 VDSNVVGWYQSTPPGDCFQSVEFIETFMNYKEN---I--GKCVCIICDPSRSNIQGGLAGLKALKLSDTFLELYRN 146 (315)
Q Consensus 76 ~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~---~--~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~~k~ 146 (315)
.|-..+||-|++|...||+|+.||.|+..||.+ . +++|+||+-+.. |..++.||||++.+++=.++
T Consensus 107 ~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftp-----gs~sl~af~LT~~G~~Wg~~ 177 (273)
T 2p8r_A 107 RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTP-----GSVSLTAYKLTPSGYEWGKA 177 (273)
T ss_dssp TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEET-----TEEEEEEEEECHHHHHHHHH
T ss_pred ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCC-----CCceeEEEEcChHHhhhhhh
Confidence 456799999999999999999999999999975 2 499999998755 99999999999998874443
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0018 Score=64.11 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=55.1
Q ss_pred CCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcC-CCeEEEEeCCCCCccCCCceeeeEEEechhhHhhhhcCC
Q 039881 76 VDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENI-GKCVCIICDPSRSNIQGGLAGLKALKLSDTFLELYRNGN 148 (315)
Q Consensus 76 ~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~-~~~V~LV~Dp~~s~~~~g~lslkAfRls~~~~~~~k~g~ 148 (315)
.|-..+||-|++|.-.||+|+.|+.++...=..+ .++|.+++.-.. |.++|.||.|+|++.+=.++++
T Consensus 419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsftP-----GS~SLsAy~LT~eGyeWG~~N~ 487 (565)
T 3sbg_A 419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTP-----GSVSLSAYNLTDEGYQWGEENK 487 (565)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEET-----TEEEEEEEEECHHHHHHHHTTT
T ss_pred ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEecC-----CceEEEEEecCHhHHHHHhhcc
Confidence 4557999999999999999999999998864332 477887776533 9999999999999987666543
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=40.15 E-value=9.6 Score=26.01 Aligned_cols=10 Identities=40% Similarity=1.102 Sum_probs=7.9
Q ss_pred cceeEEecCC
Q 039881 79 NVVGWYQSTP 88 (315)
Q Consensus 79 ~~VGWY~S~~ 88 (315)
.+||||.+.-
T Consensus 25 ~ivgwyct~l 34 (62)
T 2rh2_A 25 QIVGWYCTNL 34 (62)
T ss_dssp EEEEEECCSS
T ss_pred eEeEEEEccc
Confidence 6999997753
No 14
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=29.07 E-value=37 Score=18.84 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCCCCC.....
Q 039881 247 DENEARKAAGEDPLPE..... 262 (315)
Q Consensus 247 ~EN~~R~~~g~~~lpe..... 262 (315)
+-|.-|.+.|..|+|.
T Consensus 6 Etnk~r~~lGLkplp~..... 21 (21)
T 3plv_C 6 ETNELRASLGLKLIPPxxxxx 26 (26)
T ss_dssp HHHHHHHHTTCCCCCC.....
T ss_pred HHHHHHHHcCCCCCCC.....
Confidence 4588899999999884
No 15
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.45 E-value=1.1e+02 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039881 205 PLLESNVEFLIRCMDDLSTEQKKLKFYFKDVTRQQ 239 (315)
Q Consensus 205 ~~Lek~l~~L~e~id~l~~e~~~~~~yqr~l~r~q 239 (315)
..++..+..|-+.++.=.-+...|-..-|.++|||
T Consensus 16 ~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 16 YALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 44677777777777766666777999999999997
Done!