Query 039881
Match_columns 315
No_of_seqs 196 out of 532
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 04:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oi0a_ c.97.3.1 (A:) Hypothet 98.8 5.4E-09 3.9E-13 83.8 7.6 98 23-136 3-111 (121)
2 d2rh2a1 b.34.4.1 (A:21-78) R67 43.3 3.8 0.00028 26.1 1.0 10 79-88 21-30 (58)
3 d1l5ja1 a.118.15.1 (A:1-160) A 34.1 17 0.0012 28.6 3.8 17 247-263 7-23 (160)
4 d2f6ma1 a.2.17.1 (A:322-385) V 23.9 45 0.0033 22.0 4.0 34 206-239 16-49 (64)
5 d1mzya1 b.6.1.3 (A:41-193) Nit 13.2 69 0.005 24.0 3.4 11 81-91 122-132 (153)
6 d2j78a1 c.1.8.4 (A:3-445) Beta 12.5 65 0.0047 28.2 3.5 54 53-108 88-147 (443)
7 d1sddb1 b.6.1.3 (B:1657-1723) 11.6 33 0.0024 22.7 0.8 10 80-89 29-38 (67)
8 d1oe2a1 b.6.1.3 (A:1-159) Nitr 10.3 1.1E+02 0.0081 22.9 3.8 12 80-91 124-135 (159)
9 d1gska1 b.6.1.3 (A:2-182) Spor 10.1 41 0.003 26.1 1.1 10 82-91 149-158 (181)
10 d1us3a2 c.1.8.3 (A:243-606) Xy 8.3 2.2E+02 0.016 23.7 5.5 51 64-116 204-254 (364)
No 1
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.79 E-value=5.4e-09 Score=83.81 Aligned_cols=98 Identities=22% Similarity=0.185 Sum_probs=66.5
Q ss_pred eEEEeHhHHHHHHhhhhccCCccccCC----CCCCcc----chhh---hhhHHHHHHHHHHhcCCCCcceeEEecCCCCC
Q 039881 23 VVQIEGLVLLKIIKHCKDLSPSWLRQE----NDIDQE----TDDI---GANYQLDMMSCLRDANVDSNVVGWYQSTPPGD 91 (315)
Q Consensus 23 ~V~I~~lvllKIikH~~~~~~~~V~Gp----~~~~~~----~~~~---~~~Yq~~Ml~~l~~vn~d~~~VGWY~S~~~g~ 91 (315)
+++|+..++-.|++||+++.|.++.|- .....+ .+.. ...+..+|. -.+..+||||||||.+.
T Consensus 3 ~l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~~~i~~~~~~~n~~~~~~~~~~~~~~------~~~~~ivgi~HSHP~~~ 76 (121)
T d1oi0a_ 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPFVSGSVSAVIHLDML------PIGMKVFGTVHSHPSPS 76 (121)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTTEECEEEECCCCC-------------------CCCEEEEEEEEESSSC
T ss_pred eEEECHHHHHHHHHHHHhcCCceeEEEEEecCCcEEEEEEcCCCCCCcccccccchh------hcCCeEEEEEEecCCCC
Confidence 689999999999999999999998881 100000 0011 112223333 24678999999999999
Q ss_pred CCCCHHHHHHHHhhhhcCCCeEEEEeCCCCCccCCCceeeeEEEe
Q 039881 92 CFQSVEFIETFMNYKENIGKCVCIICDPSRSNIQGGLAGLKALKL 136 (315)
Q Consensus 92 ~f~s~~~Ietq~~yQ~~~~~~V~LV~Dp~~s~~~~g~lslkAfRl 136 (315)
+++|..|+.++.. ...+++|+.+-. +.-+++||+.
T Consensus 77 a~PS~~D~~~~~~-----~g~~~~Ivs~p~-----~~~~~~~~~~ 111 (121)
T d1oi0a_ 77 CRPSEEDLSLFTR-----FGKYHIIVCYPY-----DENSWKCYNR 111 (121)
T ss_dssp CSCCHHHHHHHHH-----SCSEEEEEETTC-----CTTCEEEEET
T ss_pred CCcCHHHHHhhhc-----cCCEEEEEeCCC-----CCCCEEEEeC
Confidence 9999999988753 467888988744 3345889964
No 2
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=43.32 E-value=3.8 Score=26.06 Aligned_cols=10 Identities=40% Similarity=1.102 Sum_probs=7.9
Q ss_pred cceeEEecCC
Q 039881 79 NVVGWYQSTP 88 (315)
Q Consensus 79 ~~VGWY~S~~ 88 (315)
.+||||.+.-
T Consensus 21 ~ivgwyct~l 30 (58)
T d2rh2a1 21 QIVGWYCTNL 30 (58)
T ss_dssp EEEEEECCSS
T ss_pred eEeEEEEccc
Confidence 5999997753
No 3
>d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.07 E-value=17 Score=28.62 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCCCCCCC
Q 039881 247 DENEARKAAGEDPLPEG 263 (315)
Q Consensus 247 ~EN~~R~~~g~~~lpe~ 263 (315)
.|=+.|.++|.||+|.+
T Consensus 7 ~~i~eR~~~GlpPlPLd 23 (160)
T d1l5ja1 7 KHVAERAAEGIAPKPLD 23 (160)
T ss_dssp HHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCC
Confidence 34467889999999995
No 4
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.88 E-value=45 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039881 206 LLESNVEFLIRCMDDLSTEQKKLKFYFKDVTRQQ 239 (315)
Q Consensus 206 ~Lek~l~~L~e~id~l~~e~~~~~~yqr~l~r~q 239 (315)
.++..+..|-+.+..=.-+..-|-..-|.++|||
T Consensus 16 AieDaiy~L~~aL~~G~I~~d~ylK~vR~LaReQ 49 (64)
T d2f6ma1 16 ALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 49 (64)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 4566666666666665556677999999999997
No 5
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.21 E-value=69 Score=24.02 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=8.2
Q ss_pred eeEEecCCCCC
Q 039881 81 VGWYQSTPPGD 91 (315)
Q Consensus 81 VGWY~S~~~g~ 91 (315)
.=|||+|..+.
T Consensus 122 t~~YH~H~~~~ 132 (153)
T d1mzya1 122 AFVYHCAPGGP 132 (153)
T ss_dssp EEEEECCCSTT
T ss_pred eEEEEeCCccc
Confidence 45999997653
No 6
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
Probab=12.52 E-value=65 Score=28.24 Aligned_cols=54 Identities=15% Similarity=0.301 Sum_probs=44.1
Q ss_pred CccchhhhhhHHHHHHHHHHhcCCCCcceeEEecCC------CCCCCCCHHHHHHHHhhhhc
Q 039881 53 DQETDDIGANYQLDMMSCLRDANVDSNVVGWYQSTP------PGDCFQSVEFIETFMNYKEN 108 (315)
Q Consensus 53 ~~~~~~~~~~Yq~~Ml~~l~~vn~d~~~VGWY~S~~------~g~~f~s~~~Ietq~~yQ~~ 108 (315)
++..+..+.+|..+|++.|++-|+. -+|.-||=.. .|+ |.+...++-+..|-..
T Consensus 88 ~g~~n~~~~~~Y~~~i~~l~~~GI~-P~VTL~Hf~~P~wl~~~gG-w~~~~~v~~F~~Ya~~ 147 (443)
T d2j78a1 88 TGRVNQKGLDFYNRIIDTLLEKGIT-PFVTIYHWDLPFALQLKGG-WANREIADWFAEYSRV 147 (443)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHTTTG-GGSTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHcCCe-eeEeecCccchhhhhhcCC-ccChHHHHHHHHHHHH
Confidence 3456777899999999999999985 8999998432 466 9999999999888753
No 7
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.64 E-value=33 Score=22.67 Aligned_cols=10 Identities=20% Similarity=-0.107 Sum_probs=7.9
Q ss_pred ceeEEecCCC
Q 039881 80 VVGWYQSTPP 89 (315)
Q Consensus 80 ~VGWY~S~~~ 89 (315)
..-|||||..
T Consensus 29 ~t~~YHsHv~ 38 (67)
T d1sddb1 29 RAWAYYSAVN 38 (67)
T ss_dssp EEEEEECCSS
T ss_pred eeEEEEcccc
Confidence 3578999985
No 8
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=10.27 E-value=1.1e+02 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=9.2
Q ss_pred ceeEEecCCCCC
Q 039881 80 VVGWYQSTPPGD 91 (315)
Q Consensus 80 ~VGWY~S~~~g~ 91 (315)
=.-|||+|..+.
T Consensus 124 Gt~~yH~H~~~~ 135 (159)
T d1oe2a1 124 GTFVYHCAPEGM 135 (159)
T ss_dssp EEEEEECCCTTC
T ss_pred ceEEEEeCCCCC
Confidence 356999998764
No 9
>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
Probab=10.13 E-value=41 Score=26.06 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=8.3
Q ss_pred eEEecCCCCC
Q 039881 82 GWYQSTPPGD 91 (315)
Q Consensus 82 GWY~S~~~g~ 91 (315)
=|||+|.++.
T Consensus 149 ~WYH~H~~g~ 158 (181)
T d1gska1 149 LWYHDHAMAL 158 (181)
T ss_dssp EEEEECCTTT
T ss_pred EEeCCCCCCC
Confidence 3999999874
No 10
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=8.35 E-value=2.2e+02 Score=23.66 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCCcceeEEecCCCCCCCCCHHHHHHHHhhhhcCCCeEEEE
Q 039881 64 QLDMMSCLRDANVDSNVVGWYQSTPPGDCFQSVEFIETFMNYKENIGKCVCII 116 (315)
Q Consensus 64 q~~Ml~~l~~vn~d~~~VGWY~S~~~g~~f~s~~~Ietq~~yQ~~~~~~V~LV 116 (315)
-..|++.|..-|.+...||+ |+|+... +.+...|...+..=......|+++
T Consensus 204 ~~~~v~~l~~~g~~idgiG~-Q~H~~~~-~p~~~~i~~~l~~~~~~g~~I~iT 254 (364)
T d1us3a2 204 MVDMVKDFQARSIPIDGVGF-QMHVCMN-YPSIANISAAMKKVVDLGLLVKIT 254 (364)
T ss_dssp HHHHHHHHHHTTCCCCEEEE-CCEEESS-CSCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHhCCCcccccee-eeeccCC-CCCHHHHHHHHHHHHhcCCeeEEE
Confidence 34577888888999999997 7777655 677777776555333345666665
Done!