BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039882
(1142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 329/1049 (31%), Positives = 505/1049 (48%), Gaps = 134/1049 (12%)
Query: 72 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAA 131
IE K W E+ +F ++P +KF+ FPY++G+LH+GHA +++ + A
Sbjct: 9 IEEKWQKRWLEAKIFEPNIRDKPKE----KKFYITVAFPYLSGHLHVGHARTYTIPDVIA 64
Query: 132 AYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLXXXXXXXXXXXXXXXD 191
+ R++G NVL P +H TG PI +A IK D
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVG----IAERIKN----------------------RD 98
Query: 192 PNGGAPLDKFXXXXXXXXXXXGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKE 251
P W + + + + F++P + +F AKE
Sbjct: 99 PKT-----------------------IWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKE 135
Query: 252 DLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCAD 311
G DW R F TT + P F F++WQ KLK G I+K + P+ P D
Sbjct: 136 TFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
Query: 312 HDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPD 371
HD GE V DY +IK E+ + G+ +YL AATLRPET+YG TN WV P+
Sbjct: 196 HDLMEGEDVPILDYIIIKFELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPN 246
Query: 372 GKYGAFEISETD---VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLS 428
Y ++ D IV++ AA L++Q+ ++ + E G LIG +++P+S
Sbjct: 247 ATYVKAKVRRKDKEETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRNPVS 301
Query: 429 FNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFE 488
+EVI LP + D TG+V SVP+ AP D++AL DLK + K+ + V
Sbjct: 302 GDEVI-ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENIT 360
Query: 489 VIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKV 548
I +I + +GD A L IKSQ +K+KL +A + Y + +G V + GK V
Sbjct: 361 YISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPV 420
Query: 549 QDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVALT-DQWYITYGEEEWKRLATE 606
Q+ K I +++E G A IMY EK V+SR G+ V+ + DQW+I YG EWK A +
Sbjct: 421 QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARK 480
Query: 607 CLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYT 666
L M + + R FE + WL++ AC+R GLGT +PWDP++++ESLSDSTIYMAYYT
Sbjct: 481 ALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 667 VAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFC-------GGPYPESSNIPSSILNRMKQ 719
++ ++K G ++P ++T E +++IF + + IP+ I++ MK+
Sbjct: 541 ISRHINKL----RQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKE 596
Query: 720 EFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTG 779
EFEYWYP D R SGKDLI NHLTF I+NH AI + HWP+G NG L +KMSKS G
Sbjct: 597 EFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKG 656
Query: 780 NFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--V 837
N AIEE AD R + + D FD + +L K+I E+++
Sbjct: 657 NVLNFIDAIEENGADVVRLYIMSLAEHDSD----FDWRRKEVGKLRKQIERFYELISQFA 712
Query: 838 ESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY-RLSC 896
E ++ DR + +N A++ T + + R A++ FY + Y R +
Sbjct: 713 EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772
Query: 897 GAGGLNRDLVWRFM-DVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILK 955
G + V R + DV RL+ P PH E +W L +GF A W P+ + +
Sbjct: 773 GRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEK-LGGEGFVSLAKW-----PEPVEE 826
Query: 956 SANKYLQDSIVLMRKLLQ--KQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAE 1013
N+ ++ +R +++ K+I+ K E+ + +Y E WK +
Sbjct: 827 WWNETIEAEEEFIRSVMEDIKEIIEVAK-----------IENAKRAYIYTAED---WKWK 872
Query: 1014 CLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGP 1073
++ K D KS + E +++S + + K+ K+ K I
Sbjct: 873 VAEVVSEKRDFKS-------SMEELMKDSEIRKHG--KEVAKIVQ----------KLIKE 913
Query: 1074 QALDLKLPFGEIEVLQENLDLIKRQLGLE 1102
+ D+K E + L+E + ++++LG+E
Sbjct: 914 RTFDVKR-INEEKALREAKEFMEKELGIE 941
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 293/874 (33%), Positives = 434/874 (49%), Gaps = 92/874 (10%)
Query: 72 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAA 131
IE K W E+ +F ++P +KF+ FPY++G+LH+GHA +++ + A
Sbjct: 9 IEEKWQKRWLEAKIFEPNIRDKPKE----KKFYITVAFPYLSGHLHVGHARTYTIPDVIA 64
Query: 132 AYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLXXXXXXXXXXXXXXXD 191
+ R++G NVL P +H TG PI A+++ D
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNR--------------------------D 98
Query: 192 PNGGAPLDKFXXXXXXXXXXXGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKE 251
P W + + + + F++P + +F AKE
Sbjct: 99 PKT-----------------------IWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKE 135
Query: 252 DLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCAD 311
G DW R F TT + P F F++WQ KLK G I+K + P+ P D
Sbjct: 136 TFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
Query: 312 HDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPD 371
HD GE V DY +IK E+ + G+ +YL AATLRPET+YG TN WV P+
Sbjct: 196 HDLMEGEDVPILDYIIIKFELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPN 246
Query: 372 GKYGAFEISETD---VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLS 428
Y ++ D IV++ AA L++Q+ ++ + E G LIG +++P+S
Sbjct: 247 ATYVKAKVRRKDKEETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRNPVS 301
Query: 429 FNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFE 488
+EVI LP + D TG+V SVP+ AP D++AL DLK + K+ + V
Sbjct: 302 GDEVI-ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENIT 360
Query: 489 VIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKV 548
I +I + +GD A L IKSQ +K+KL +A + Y + +G V + GK V
Sbjct: 361 YISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPV 420
Query: 549 QDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVALT-DQWYITYGEEEWKRLATE 606
Q+ K I +++E G A IMY EK V+SR G+ V+ + DQW+I YG EWK A +
Sbjct: 421 QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARK 480
Query: 607 CLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYT 666
L M + + R FE + WL++ AC+R GLGT +PWDP++++ESLSDSTIYMAYYT
Sbjct: 481 ALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 667 VAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFC-------GGPYPESSNIPSSILNRMKQ 719
++ ++K G ++P ++T E +++IF + + IP+ I++ MK+
Sbjct: 541 ISRHINKL----RQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKE 596
Query: 720 EFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTG 779
EFEYWYP D R SGKDLI NHLTF I+NH AI + HWP+G NG L +KMSKS G
Sbjct: 597 EFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKG 656
Query: 780 NFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--V 837
N AIEE AD R + + D FD + +L K+I E+++
Sbjct: 657 NVLNFIDAIEENGADVVRLYIMSLAEHDSD----FDWRRKEVGKLRKQIERFYELISQFA 712
Query: 838 ESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY-RLSC 896
E ++ DR + +N A++ T + + R A++ FY + Y R +
Sbjct: 713 EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772
Query: 897 GAGGLNRDLVWRFM-DVQTRLITPICPHYAEYVW 929
G + V R + DV RL+ P PH E +W
Sbjct: 773 GRDDEAKRYVLRTLADVWVRLMAPFTPHICEELW 806
>pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
pdb|2WFD|B Chain B, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
Length = 252
Score = 283 bits (723), Expect = 5e-76, Method: Composition-based stats.
Identities = 134/249 (53%), Positives = 180/249 (72%)
Query: 322 PQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISE 381
PQ+YTL+K++VL+P+P+K L+GK ++L AATLRPET +GQTN WV PD KY FE
Sbjct: 4 PQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETXFGQTNCWVRPDXKYIGFETVN 63
Query: 382 TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTI 441
D+ I T++AA N +YQ F++ + EL G +++G L +PL+ +VIY LP LTI
Sbjct: 64 GDIFICTQKAARNXSYQGFTKDNGVVPVVKELXGEEILGASLSAPLTSYKVIYVLPXLTI 123
Query: 442 LTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDK 501
DKGTG+VTSVPSD+PDD AL DLK K A RAK+G++D+ VLPFE +P+I IP FG+
Sbjct: 124 KEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDXVLPFEPVPVIEIPGFGNL 183
Query: 502 SAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIE 561
SA +C +LKI+SQN+++KLAEAK YL+GF EG LV F G+KVQD K I+ K I+
Sbjct: 184 SAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIXLVDGFKGQKVQDVKKTIQKKXID 243
Query: 562 TGEAIMYSE 570
G+A++Y E
Sbjct: 244 AGDALIYXE 252
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|B Chain B, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|C Chain C, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|D Chain D, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|E Chain E, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|F Chain F, The Crystal Structure Of Glleurs-Cp1
Length = 311
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 174/313 (55%), Gaps = 54/313 (17%)
Query: 315 ASGEGVQPQDYTLIKMEVLQ--------------------------------PFP----- 337
SGEGVQPQ+Y IK+E++ P
Sbjct: 1 GSGEGVQPQEYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSN 60
Query: 338 ----AKFGPL-----EGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVT 388
A F L + KVYL AATLRPETM GQTN WVLP G+YGA+ I++ +V+IV+
Sbjct: 61 PKNKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVS 120
Query: 389 ERAALNLAYQNFSRIPKKP----TCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTD 444
E AA+N+A+Q + KP + E++G DL+ +++PLS E I+ LP+ TI D
Sbjct: 121 EHAAVNMAHQGLNN--NKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMD 178
Query: 445 KGTGIVTSVPSDAPDDYMALHD-LKAKPAFRAKFGVKDEWVL-PFEVIPIINIPEFGDKS 502
KGTGIVTSVPSDAPDDY D L+ + K+GV +L P+ +PII IP+ G S
Sbjct: 179 KGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLS 238
Query: 503 AERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIET 562
A R+C + + S +++ KL + K + Y +GF G M +G FAG+ V+D K R L++
Sbjct: 239 AVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVKDCKQSCRDLLVQN 298
Query: 563 GEAIMYSEPEKRV 575
+ I+YSEPE V
Sbjct: 299 NQCIVYSEPESEV 311
>pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|B Chain B, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|C Chain C, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|D Chain D, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFG|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain Bound To A Benzoxaborole-Amp
Adduct
Length = 261
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 156/255 (61%), Gaps = 16/255 (6%)
Query: 320 VQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEI 379
V PQ L K E L ++ KVYL AATLRPETMYGQT +V P YG F+
Sbjct: 13 VAPQAQELFKKESLD--------VKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDA 64
Query: 380 SETDVLIVTERAALNLAYQNFS--RIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALP 437
D I TERA N+++QN + R KP L + G LIG + +P + N+ + LP
Sbjct: 65 GNGDYFITTERAFKNMSFQNLTPKRGYYKP--LFTINGKTLIGSRIDAPYAVNKNLRVLP 122
Query: 438 MLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPE 497
M T+L KGTG+VT VPSD+PDD++ DL KP + +G++ +WV +++PI++ +
Sbjct: 123 METVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEY---YGIEKDWVQT-DIVPIVHTEK 178
Query: 498 FGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRS 557
+GDK AE + DLKI+S + +LA AK L Y GF GTML+G + G KV+DAKP ++
Sbjct: 179 YGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQ 238
Query: 558 KLIETGEAIMYSEPE 572
LI+ G A +Y+EPE
Sbjct: 239 DLIDEGLAFVYNEPE 253
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLG 119
G + R EIESKV W+E F ES EK++ PY +G LH+G
Sbjct: 18 GSHMQEQYRPEEIESKVQLHWDEKRTFEV------TEDESKEKYYCLSMLPYPSGRLHMG 71
Query: 120 HAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
H +++ + A Y R+ G NVL P G+ G+P + +A K
Sbjct: 72 HVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVK 112
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGY-LHLGHAFSFSKLEF 129
EIE K T WE++ F +S +KF+ FPY +G LH+GH ++ +
Sbjct: 13 EIEKKWQTRWEKTKAFKT-------TNKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDI 65
Query: 130 AAAYHRLKGANVLLPFGFHCTGMPIKASA 158
+ Y RLKG +VL P G+ G+P + A
Sbjct: 66 ISRYKRLKGFDVLHPIGWDAFGLPAEQYA 94
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 719 QEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-----RGFRCNGHIM-LNSE 772
+ F W P DL + G++ HL + + H + + P + G I+ + +
Sbjct: 350 EAFSKWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKDGQ 409
Query: 773 KMSKSTGNFRTLKQAIEEFSADATR 797
KMSKS GN + I+ F AD R
Sbjct: 410 KMSKSLGNVVNPDEIIQNFGADTLR 434
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 72 IESKVHTWWEESNVFNAE--PGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEF 129
IE+K +WEE A+ PG R G+++ FPY +G LH+GH +++ +
Sbjct: 9 IEAKWQRFWEEKGFMKAKDLPGGR------GKQYVLVM-FPYPSGDLHMGHLKNYTMGDV 61
Query: 130 AAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 162
A + R++G VL P G+ G+P + +A K
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFG 94
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 91/252 (36%), Gaps = 50/252 (19%)
Query: 249 AKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQP 308
AKE L+ G+ DW R T E P + + QW K+ G + + P
Sbjct: 108 AKESLRLMGILYDWDREVTTCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTV 165
Query: 309 CADHDRASGEGVQPQDYTLIKMEVLQPF-------------------PAKFG-------- 341
A+ G + +D + K E+ Q + P K
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225
Query: 342 ---------PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAA 392
P+EGK+V + T RP+T++G T + P E T L E+
Sbjct: 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAP-------EHPLTLELAAPEKRE 278
Query: 393 LNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLT---ILTDKGTGI 449
LAY ++ +K + G + G+ L + +P+ T +L GTG
Sbjct: 279 EVLAYVEAAK--RKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGA 336
Query: 450 VTSVPSDAPDDY 461
+ +VP+ DY
Sbjct: 337 IMAVPAHDQRDY 348
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 10/175 (5%)
Query: 774 MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTG---ILRLTKEIAW 830
MSKS GN + ++E AD R ++ A ++ + + + R+ + +A
Sbjct: 638 MSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAE 697
Query: 831 MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARD 890
E L S + DR +++ ++ + + F A+ + A
Sbjct: 698 DREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAI-AALMEFLNALY 756
Query: 891 EYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWP 945
EYR + R + ++ +++ P PH AE +W F +AGWP
Sbjct: 757 EYRKDRPVTPVYRTAIRYYL----QMLFPFAPHLAEELWHWFWPDSLF--EAGWP 805
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 72 IESKVHTWWEESNVFNAE--PGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEF 129
IE+K +WEE A+ PG R G+++ FPY +G LH+GH +++ +
Sbjct: 9 IEAKWQRFWEEKGFMKAKDLPGGR------GKQYVLVM-FPYPSGDLHMGHLKNYTMGDV 61
Query: 130 AAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 162
A + R++G VL P G+ G+P + +A K
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFG 94
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 91/252 (36%), Gaps = 50/252 (19%)
Query: 249 AKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQP 308
AKE L+ G+ DW R T E P + + QW K+ G + + P
Sbjct: 108 AKESLRLMGILYDWDREVTTCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTV 165
Query: 309 CADHDRASGEGVQPQDYTLIKMEVLQPF-------------------PAKFG-------- 341
A+ G + +D + K E+ Q + P K
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225
Query: 342 ---------PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAA 392
P+EGK+V + T RP+T++G T + P E T L E+
Sbjct: 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAP-------EHPLTLELAAPEKRE 278
Query: 393 LNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLT---ILTDKGTGI 449
LAY ++ +K + G + G+ L + +P+ T +L GTG
Sbjct: 279 EVLAYVEAAK--RKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGA 336
Query: 450 VTSVPSDAPDDY 461
+ +VP+ DY
Sbjct: 337 IMAVPAHDQRDY 348
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 10/175 (5%)
Query: 774 MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTG---ILRLTKEIAW 830
MSKS GN + ++E AD R ++ A ++ + + + R+ + +A
Sbjct: 638 MSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAE 697
Query: 831 MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARD 890
E L S + DR +++ ++ + + F A+ + A
Sbjct: 698 DREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAI-AALMEFLNALY 756
Query: 891 EYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWP 945
EYR + R + ++ +++ P PH AE +W F +AGWP
Sbjct: 757 EYRKDRPVTPVYRTAIRYYL----QMLFPFAPHLAEELWHWFWPDSLF--EAGWP 805
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 20/266 (7%)
Query: 719 QEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKS 777
++ + +YP D+ V+G D++ ++ + M +R + + +G ++ +KMSKS
Sbjct: 474 EDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPF-KTVLLHGLVLDEKGQKMSKS 532
Query: 778 TGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF---VFDTANTGILRLTKEIAWMEEV 834
GN + +E + ADA RF+L G D + A +L ++ +
Sbjct: 533 KGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFV--L 590
Query: 835 LAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK-------TGFYD--L 885
L+ E T ADR + ++ VE Y+ +A + + F D L
Sbjct: 591 LSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYL 650
Query: 886 QAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWP 945
+AA+ L G R L + V +L+ P+ P +++ + K+ A++A WP
Sbjct: 651 EAAKPA--LKAGNAHTLRTLE-EVLAVLLKLLHPMMPFLTSELYQALTGKEELALEA-WP 706
Query: 946 TYGTPDLILKSANKYLQDSIVLMRKL 971
G D + A + L+ ++ +R L
Sbjct: 707 EPGGRDEEAERAFEALKQAVTAVRAL 732
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 96 NPESGEKFFGNF-PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPI 154
NP+SG+ F F P P + G LH+GHA S + Y R++G + G G+
Sbjct: 28 NPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIAT 87
Query: 155 KASADKL 161
+ ++L
Sbjct: 88 QVVVERL 94
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 125/574 (21%), Positives = 206/574 (35%), Gaps = 125/574 (21%)
Query: 271 INPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASG--EGVQPQDYTLI 328
+ P + + W ++ L G + +D + Y P P + H+ A G E P Y
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRF 209
Query: 329 KMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVT 388
++ P K G LE K L T P T+ G A V P+ Y AF++ + + LI+
Sbjct: 210 PLKE----PKKLG-LE--KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD-EALILE 261
Query: 389 ERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPL--SFNEVIYALPMLTILTDKG 446
E L + + L G L GLP P + + + + + + G
Sbjct: 262 EGLGRKL-------LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDG 314
Query: 447 TGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERV 506
TGIV P+ FG +D E + +P
Sbjct: 315 TGIVHQAPA---------------------FGAED-----LETARVYGLP---------- 338
Query: 507 CTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETG--- 563
+K+ +E EG +LV F G ++A I L G
Sbjct: 339 ----LLKTVDE-----------------EGKLLVEPFKGLYFREANRAILRDLRGRGLLF 377
Query: 564 --EAIMYSEPEKRVMSRSGDECVVALTDQWYI--TYGEEEWKRLATECLNSMNLYHDENR 619
E+ ++S P R + T+ W+I T ++E R E ++ + + E R
Sbjct: 378 KEESYLHSYPH---CWRCSTPLMYYATESWFIKNTLFKDELIRNNQE-IHWVPPHIKEGR 433
Query: 620 HGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGS 679
+G L L WA SR+ GT + P ++ ++ ++ + K
Sbjct: 434 YG--EWLKNLVDWALSRNRYWGTPL---PIWVCQACGKEEAIGSFQEL-----KARATKP 483
Query: 680 TTGSIEPGQ-MTDEVWEFIFCGG-----PYP-----ESSNIPSSILN---RMKQEFEYWY 725
+P + D+V CGG PY +S +P + L+ ++ F +
Sbjct: 484 LPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESF 543
Query: 726 PFDLRVSGKDLIQ------NHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKST 778
P D G D + + L ++ A + C+G I+ +KMSKS
Sbjct: 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAF-------KNVICHGLILDEKGQKMSKSK 596
Query: 779 GNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812
GN I +F ADA R+ + + D F
Sbjct: 597 GNVVDPWDIIRKFGADALRWYIYVSAPPEADRRF 630
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
++E +V +W+ +F R + G ++ P NG H+GHA + S +
Sbjct: 12 KLEEEVLAFWKREKIFQKSVENR----KGGPRYTVYEGPPTANGLPHVGHAQARSYKDLF 67
Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASAD-----KLAREIKQFG 169
Y ++G G+ G+P++ + K REI+ +G
Sbjct: 68 PRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYG 111
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 719 QEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMSKS 777
+ F ++P DL + GKD+I+ H +Y +MS P+ +G ++ EKMSKS
Sbjct: 258 ESFRRYWPADLHMIGKDIIRFH---TVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKS 314
Query: 778 TGNFRTLKQAIEEFSADATRFSL 800
GN ++ F D R+ L
Sbjct: 315 IGNVVDPVNLVDTFGLDQVRYFL 337
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
E F+ Y NG H+GHA+ + + A + RL G +V G G + +A K
Sbjct: 12 EPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK 71
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 94 PPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMP 153
P + + + FF P Y+N H+GH +S ++ YHR+KG V + G G
Sbjct: 19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQK 78
Query: 154 IKASADK 160
+ +A K
Sbjct: 79 VAEAAAK 85
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMS-QRHWPRGFRCNGHIMLNSEKMSKSTGNFRT 783
+P D+ V GKD+++ H IY +MS + P +G + +K+SKS GN
Sbjct: 293 WPADVHVVGKDILKFH---AIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFD 349
Query: 784 LKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIA 829
+ +EF DA ++ L + DD ++ + + RL E+A
Sbjct: 350 PVEKAKEFGIDALKYFLMRESNFQDDGDY---SDKNMVARLNGELA 392
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 714 LNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRH-WPRGFRCNGHIMLNSE 772
++ ++ + E ++P DL + GKD+++ H +Y +MS + P+ +G + +
Sbjct: 238 ISALEDKVEIYWPADLHLVGKDILRFH---TVYWPAFLMSLGYELPKKVFAHGWWTVEGK 294
Query: 773 KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812
KMSK+ GN + ++E+ D R+ L D +F
Sbjct: 295 KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDF 334
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
+KF+ P Y+N HLGHA++ + A Y+RL+ +V G G+ I+ A++
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE 64
Query: 161 LA 162
L
Sbjct: 65 LG 66
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQ 786
FD+ G DL+ H I T + + + +G +M++ EKMSKS GNF T++
Sbjct: 221 FDIHGGGSDLMFPHHENEIAQSTCAHDGQ-YVNYWMHSGMVMVDREKMSKSLGNFFTVRD 279
Query: 787 AIEEFSADATRFSL 800
++ + A+ R+ L
Sbjct: 280 VLKYYDAETVRYFL 293
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMSKSTGNFRT 783
+P D+ V GKD+++ H IY ++S P+ +G + +K+SKS GN
Sbjct: 277 FPADVHVIGKDILKFH---AIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFD 333
Query: 784 LKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIA 829
+ EEF DA ++ L DD ++ + I RL E+A
Sbjct: 334 PVEKAEEFGYDALKYFLLRESGFSDDGDY---SDKNMIARLNGELA 376
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
FF P Y+N H+GH +S + YHR+KG V G G + +A +
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ 68
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMSKSTGNFRT 783
+P D+ V GKD+++ H IY ++S P+ +G + +K+SKS GN
Sbjct: 277 FPADVHVIGKDILKFH---AIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFD 333
Query: 784 LKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIA 829
+ EEF DA ++ L DD ++ + I RL E+A
Sbjct: 334 PVEKAEEFGYDALKYFLLRESGFSDDGDY---SDKNMIARLNGELA 376
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
FF P Y+N H+GH +S + YHR+KG V G G + +A +
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ 68
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMSKSTGNFRT 783
+P D+ V GKD+++ H IY ++S P+ +G + +K+SKS GN
Sbjct: 277 FPADVHVIGKDILKFH---AIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFD 333
Query: 784 LKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIA 829
+ EEF DA ++ L DD ++ + I RL E+A
Sbjct: 334 PVEKAEEFGYDALKYFLLRESGFSDDGDY---SDKNMIARLNGELA 376
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
FF P Y+N H+GH +S + YHR+KG V G G + +A +
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ 68
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 95 PNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPI 154
P S EK++ Y NG H+GHA+ + A + RL G +V G G+ +
Sbjct: 19 PGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKM 78
Query: 155 KASADK 160
SA K
Sbjct: 79 LQSARK 84
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 719 QEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMS-QRHWPRGFRCNGHIMLNSEKMSKS 777
+ + YW P + + GKD+ + H +Y +MS Q P+ +G + EKMSKS
Sbjct: 270 ERWAYW-PANAHIIGKDISRFH---AVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKS 325
Query: 778 TGNFRTLKQAIEEFSADATRFSL 800
GN + +E + D R+ L
Sbjct: 326 VGNVIDPFELVERYGLDQLRYFL 348
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQ 786
D++ G DLI H + + ++ +R + R + G I + KMSKS GN + Q
Sbjct: 245 LDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQ 304
Query: 787 -AIEEFSADATRFSLADAGDGVDD---ANFVFDTANTGILRLTKEIA 829
+ A R L +G +D +N V D AN + R A
Sbjct: 305 LRAQGVDPSAIRLGLF-SGHYREDRFWSNEVLDEANARLARWRSATA 350
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 162
F+ P Y+N HLGHA++ +F A +HRL G G G + +A
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 163 REIKQF 168
+ K F
Sbjct: 65 EDPKAF 70
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 162
F+ P Y+N HLGHA++ +F A +HRL G G G + +A
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 163 REIKQF 168
+ K F
Sbjct: 65 EDPKAF 70
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 162
F+ P Y+N HLGHA++ +F A +HRL G G G + +A
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 163 REIKQF 168
+ K F
Sbjct: 65 EDPKAF 70
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 98 ESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKAS 157
+ +K PY NG +HLGH + + Y R++G V G PI
Sbjct: 3 QVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK 62
Query: 158 ADKLA 162
A +L
Sbjct: 63 AQQLG 67
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRHW--PRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE 790
GKD++ H F A++ ++ P +G++ +N KMSKS G F +
Sbjct: 295 GKDIVYFHSLFW----PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 350
Query: 791 FSADATRF 798
F AD+ R+
Sbjct: 351 FDADSLRY 358
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 98 ESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKAS 157
+ +K PY NG +HLGH + + Y R++G V G PI
Sbjct: 2 QVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK 61
Query: 158 ADKLA 162
A +L
Sbjct: 62 AQQLG 66
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRHW--PRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE 790
GKD++ H F A++ ++ P +G++ +N KMSKS G F +
Sbjct: 294 GKDIVYFHSLFW----PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 791 FSADATRF 798
F AD+ R+
Sbjct: 350 FDADSLRY 357
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 98 ESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKAS 157
+ +K PY NG +HLGH + + Y R++G V G PI
Sbjct: 2 QVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK 61
Query: 158 ADKLA 162
A +L
Sbjct: 62 AQQLG 66
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRHW--PRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE 790
GKD++ H F A++ ++ P +G++ +N KMSKS G F +
Sbjct: 294 GKDIVYFHSLFW----PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 791 FSADATRF 798
F AD+ R+
Sbjct: 350 FDADSLRY 357
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 98 ESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKAS 157
+ +K PY NG +HLGH + + Y R++G V G PI
Sbjct: 2 QVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK 61
Query: 158 ADKLA 162
A +L
Sbjct: 62 AQQLG 66
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRHW--PRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE 790
GKD++ H F A++ ++ P +G++ +N KMSKS G F +
Sbjct: 294 GKDIVYFHSLFW----PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 791 FSADATRF 798
F AD+ R+
Sbjct: 350 FDADSLRY 357
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 110 PYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 162
PY NG +HLGH + + Y R++G V G PI A +L
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG 79
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 758 PRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRF 798
P +G++ +N KMSKS G F + F AD+ R+
Sbjct: 330 PSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRY 370
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 101 EKFFGNFPF------PYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPI 154
EK GN F PY NG LH+GHA + +F Y ++G G+ G+PI
Sbjct: 42 EKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPI 101
Query: 155 KASADK 160
+ + K
Sbjct: 102 EQALTK 107
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 18/219 (8%)
Query: 248 LAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQ 307
L K+D + G+ D+ ++T + P +++ Q+R M K + Y P+
Sbjct: 134 LQKKDFRRLGVRGDFNDPYIT--LKPEYEAA---QIRIFGEMAD--KGLIYKGKKPVYWS 186
Query: 308 PCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAW 367
P ++ A E ++ D + V G ++ ++ T P T+
Sbjct: 187 PSSESSLAEAE-IEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTT-PWTIPSNVAIT 244
Query: 368 VLPDGKYGAFEISETDVLI---VTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLK 424
V P+ KYG + ++ +I +++ A L + S +K E TG +L + +
Sbjct: 245 VHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEK-----EYTGKELEWVVAQ 299
Query: 425 SPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMA 463
P E + + + TD GTG V + P DDY+
Sbjct: 300 HPFLDRESL-VINGDHVTTDAGTGCVHTAPGHGEDDYIV 337
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 109 FPYMNGYLHLGH-AFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 163
PY NG +H GH A ++ + Y RLKG +V+ G G PI A K R
Sbjct: 10 LPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGR 65
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 701 GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRG 760
G + E S SSIL + PFD+ G DL H I A ++ + +
Sbjct: 207 GWHIECSAXSSSILGQ---------PFDIHGGGLDLKFPHHENEIAQSEA-GEEKPFVKL 256
Query: 761 FRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSL 800
+ G + +N EK SKS GN ++++A++E + R+ L
Sbjct: 257 WXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFL 296
>pdb|4ATW|A Chain A, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|B Chain B, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|C Chain C, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|D Chain D, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|E Chain E, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|F Chain F, The Crystal Structure Of Arabinofuranosidase
Length = 482
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 213 GVQMY-QWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEI 271
G +MY +W++ +D +E KW+ F P +KA +GCD
Sbjct: 170 GNEMYGEWQV--GHMTADEYARAAKEYTKWMKVFDPT----IKAIAVGCD---------- 213
Query: 272 NPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDD 306
+P W +R L+ G +I + Y Y+ DD
Sbjct: 214 DPI------WNLRVLQEAGDVIDFISYHFYTGSDD 242
>pdb|3UG3|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG4|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG5|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
Length = 504
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 213 GVQMY-QWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEI 271
G +MY +W++ +D +E KW+ F P +KA +GCD
Sbjct: 190 GNEMYGEWQVGHM--TADEYARAAKEYTKWMKVFDPT----IKAIAVGCD---------- 233
Query: 272 NPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDD 306
+P W +R L+ G +I + Y Y+ DD
Sbjct: 234 DPI------WNLRVLQEAGDVIDFISYHFYTGSDD 262
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 593 ITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQW-ACSRSFGLG----TRIPWD 647
I Y ++++ L ECL + L+ D H+LG+ S+++G+ T + +
Sbjct: 25 IKYLNQDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSN 84
Query: 648 PQFLVE----------SLSDSTIYMAYYTVA---HMLHKGDMYGSTTGSIEPGQMTDEVW 694
PQF+V+ +L DS + A ++ +LH+ YG + G ++W
Sbjct: 85 PQFIVDGATRTDICQGALGDSWLLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLW 144
Query: 695 EF 696
+F
Sbjct: 145 QF 146
>pdb|3CLH|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
pdb|3CLH|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
Length = 343
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 827 EIAWMEEVLAVESSLRTGPPSTYA-DRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 885
EI ++ L + S+ G Y +R+ E+ + V + + YKN+ E + +++
Sbjct: 22 EIKLKQKALIISDSIVAGLHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEM 81
Query: 886 QAARDEYRLSCGAGGLNRDLV 906
Q R ++ G GG+ D+V
Sbjct: 82 QLNRHSLMIALG-GGVISDMV 101
>pdb|2E1N|A Chain A, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
pdb|2E1N|B Chain B, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
Length = 138
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 29/105 (27%)
Query: 922 PHYAE------YVWRVILKKDGFA------VKAGWPTYGTPDLILKSANKYLQDSIVLMR 969
PHY YV V+ +D + ++ WP Y D +L +A K+L+D
Sbjct: 27 PHYLSKELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLED------ 80
Query: 970 KLLQKQILGS--KKANKKGAP-----VATLTEDKLKGLVYVNEQF 1007
+QI+ KK +G P +A +D+ + L + E++
Sbjct: 81 ----EQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERY 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,341,736
Number of Sequences: 62578
Number of extensions: 1479930
Number of successful extensions: 3180
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3079
Number of HSP's gapped (non-prelim): 83
length of query: 1142
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1033
effective length of database: 8,152,335
effective search space: 8421362055
effective search space used: 8421362055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)