Query 039882
Match_columns 1142
No_of_seqs 463 out of 2985
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02959 aminoacyl-tRNA ligase 100.0 3E-224 7E-229 2121.2 101.9 1077 60-1139 6-1083(1084)
2 KOG0437 Leucyl-tRNA synthetase 100.0 4E-220 8E-225 1852.9 69.0 1059 60-1140 5-1078(1080)
3 TIGR00395 leuS_arch leucyl-tRN 100.0 1E-187 3E-192 1774.2 88.8 931 71-1140 2-938 (938)
4 PRK12300 leuS leucyl-tRNA synt 100.0 3E-178 6E-183 1682.3 87.1 885 116-1140 1-897 (897)
5 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-166 3E-171 1514.6 60.9 796 48-1005 2-847 (933)
6 PRK13804 ileS isoleucyl-tRNA s 100.0 7E-157 1E-161 1491.0 73.2 808 46-1005 6-872 (961)
7 PRK05743 ileS isoleucyl-tRNA s 100.0 2E-156 4E-161 1485.2 70.3 791 48-1004 3-833 (912)
8 PTZ00427 isoleucine-tRNA ligas 100.0 2E-155 5E-160 1480.7 71.4 870 60-1064 65-1053(1205)
9 PRK06039 ileS isoleucyl-tRNA s 100.0 1E-153 2E-158 1470.8 76.7 879 61-1105 5-949 (975)
10 PLN02882 aminoacyl-tRNA ligase 100.0 8E-153 2E-157 1465.3 73.3 850 65-1065 6-929 (1159)
11 PLN02843 isoleucyl-tRNA synthe 100.0 2E-152 5E-157 1448.6 71.2 783 65-1005 1-867 (974)
12 COG0525 ValS Valyl-tRNA synthe 100.0 2E-150 4E-155 1355.8 68.5 718 63-976 1-742 (877)
13 TIGR00392 ileS isoleucyl-tRNA 100.0 6E-150 1E-154 1431.1 67.0 782 62-980 1-841 (861)
14 PLN02943 aminoacyl-tRNA ligase 100.0 2E-143 3E-148 1368.1 70.1 753 25-976 24-814 (958)
15 TIGR00422 valS valyl-tRNA synt 100.0 2E-143 4E-148 1370.2 66.1 720 64-976 2-744 (861)
16 PRK05729 valS valyl-tRNA synth 100.0 2E-143 4E-148 1368.1 66.4 713 61-975 3-737 (874)
17 PLN02381 valyl-tRNA synthetase 100.0 4E-143 9E-148 1369.2 65.7 736 62-975 95-920 (1066)
18 PTZ00419 valyl-tRNA synthetase 100.0 6E-143 1E-147 1378.0 65.6 733 61-976 22-852 (995)
19 PRK14900 valS valyl-tRNA synth 100.0 2E-140 3E-145 1348.8 67.5 723 58-976 10-763 (1052)
20 PRK13208 valS valyl-tRNA synth 100.0 1E-138 3E-143 1316.1 66.9 717 60-975 3-747 (800)
21 KOG0433 Isoleucyl-tRNA synthet 100.0 3E-132 7E-137 1137.6 55.7 770 44-980 12-843 (937)
22 PF00133 tRNA-synt_1: tRNA syn 100.0 4E-135 8E-140 1245.4 33.4 585 75-813 1-601 (601)
23 KOG0432 Valyl-tRNA synthetase 100.0 1E-127 3E-132 1122.8 53.5 737 62-976 41-856 (995)
24 KOG0434 Isoleucyl-tRNA synthet 100.0 9E-126 2E-130 1071.3 51.2 849 65-1065 6-918 (1070)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 2E-119 5E-124 1134.0 53.6 666 67-948 1-773 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 1E-119 3E-124 1135.3 50.9 683 60-948 73-888 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 5E-121 1E-125 1107.7 36.9 727 65-949 3-747 (814)
28 PRK00390 leuS leucyl-tRNA synt 100.0 1E-118 2E-123 1126.4 56.0 668 64-948 2-736 (805)
29 KOG0435 Leucyl-tRNA synthetase 100.0 6E-90 1.3E-94 783.4 36.5 653 68-949 31-796 (876)
30 PRK12268 methionyl-tRNA synthe 100.0 3.8E-78 8.2E-83 740.3 39.1 493 101-947 3-521 (556)
31 cd00817 ValRS_core catalytic c 100.0 6.2E-76 1.3E-80 685.1 28.9 371 101-812 1-382 (382)
32 TIGR00398 metG methionyl-tRNA 100.0 9E-74 1.9E-78 697.9 42.7 473 103-932 1-501 (530)
33 PRK12267 methionyl-tRNA synthe 100.0 1.7E-73 3.6E-78 708.0 40.0 448 100-932 3-476 (648)
34 PLN02224 methionine-tRNA ligas 100.0 5.5E-71 1.2E-75 668.1 41.0 451 100-932 68-544 (616)
35 PRK00133 metG methionyl-tRNA s 100.0 1.3E-70 2.9E-75 682.6 43.1 473 101-932 2-501 (673)
36 PRK11893 methionyl-tRNA synthe 100.0 9.9E-71 2.1E-75 670.2 40.9 451 102-932 2-474 (511)
37 PLN02610 probable methionyl-tR 100.0 1.4E-70 3E-75 682.9 42.2 476 100-932 16-530 (801)
38 cd00818 IleRS_core catalytic c 100.0 3.3E-68 7.1E-73 610.4 30.1 336 101-812 1-338 (338)
39 COG0143 MetG Methionyl-tRNA sy 100.0 2.8E-66 6E-71 613.0 41.0 480 100-935 4-512 (558)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 2.2E-58 4.7E-63 526.1 25.7 310 102-812 1-312 (312)
41 cd00812 LeuRS_core catalytic c 100.0 1.8E-56 3.9E-61 509.2 22.6 310 102-814 1-314 (314)
42 KOG0436 Methionyl-tRNA synthet 100.0 4.2E-52 9.2E-57 452.5 32.8 458 100-932 38-525 (578)
43 cd00814 MetRS_core catalytic c 100.0 5E-53 1.1E-57 482.6 25.5 313 102-812 1-319 (319)
44 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.5E-53 3.3E-58 495.9 18.5 377 103-831 1-390 (391)
45 PRK00260 cysS cysteinyl-tRNA s 100.0 1.9E-35 4.2E-40 352.3 28.6 154 725-895 219-376 (463)
46 KOG1247 Methionyl-tRNA synthet 100.0 3.3E-35 7.1E-40 320.3 24.1 303 582-938 191-523 (567)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.3E-29 2.9E-34 310.2 39.5 167 725-894 267-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 2.8E-29 6.1E-34 298.6 30.8 154 725-890 218-375 (465)
49 TIGR03447 mycothiol_MshC cyste 100.0 3.7E-28 8E-33 279.6 24.9 144 726-890 241-386 (411)
50 PRK12418 cysteinyl-tRNA synthe 100.0 1.6E-27 3.4E-32 273.5 22.5 150 726-897 214-366 (384)
51 PRK14536 cysS cysteinyl-tRNA s 99.9 1.6E-25 3.5E-30 263.9 30.8 161 727-890 234-403 (490)
52 PLN02946 cysteine-tRNA ligase 99.9 5E-26 1.1E-30 270.6 24.4 163 726-894 277-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 99.9 2.1E-25 4.4E-30 265.7 25.9 151 726-891 446-612 (699)
54 cd00672 CysRS_core catalytic c 99.9 1.9E-25 4.2E-30 239.0 17.1 86 726-813 128-213 (213)
55 PRK14534 cysS cysteinyl-tRNA s 99.9 2.4E-22 5.2E-27 235.9 30.1 163 726-891 233-397 (481)
56 cd00674 LysRS_core_class_I cat 99.9 7.1E-22 1.5E-26 225.0 24.8 124 101-294 19-151 (353)
57 PRK01611 argS arginyl-tRNA syn 99.9 2.2E-19 4.7E-24 217.7 32.2 131 760-893 305-466 (507)
58 PRK00750 lysK lysyl-tRNA synth 99.8 1.6E-19 3.6E-24 217.1 20.7 86 726-814 234-321 (510)
59 PF13603 tRNA-synt_1_2: Leucyl 99.8 7.5E-20 1.6E-24 189.6 4.8 172 326-560 10-185 (185)
60 cd07961 Anticodon_Ia_Ile_ABEc 99.8 1.6E-17 3.4E-22 175.4 17.9 148 820-969 13-183 (183)
61 PF01406 tRNA-synt_1e: tRNA sy 99.7 1.2E-16 2.6E-21 175.7 20.5 94 725-820 205-298 (300)
62 TIGR00456 argS arginyl-tRNA sy 99.7 1E-14 2.2E-19 179.1 35.3 139 756-896 355-526 (566)
63 cd07960 Anticodon_Ia_Ile_BEm A 99.7 3.5E-16 7.5E-21 164.7 17.6 150 817-971 9-178 (180)
64 COG0215 CysS Cysteinyl-tRNA sy 99.7 5.5E-16 1.2E-20 178.5 15.8 155 726-894 221-376 (464)
65 TIGR00467 lysS_arch lysyl-tRNA 99.6 4.9E-15 1.1E-19 177.1 19.5 49 101-150 18-66 (515)
66 PF08264 Anticodon_1: Anticodo 99.6 1.1E-15 2.4E-20 156.3 11.3 122 851-974 1-140 (153)
67 KOG2007 Cysteinyl-tRNA synthet 99.6 1.2E-14 2.6E-19 164.5 16.7 185 726-916 258-446 (586)
68 cd07959 Anticodon_Ia_Leu_AEc A 99.5 1.7E-13 3.7E-18 133.4 14.7 117 812-932 1-117 (117)
69 cd00671 ArgRS_core catalytic c 99.5 1E-13 2.2E-18 149.7 10.6 120 103-303 2-122 (212)
70 PRK12451 arginyl-tRNA syntheta 99.4 5.1E-10 1.1E-14 137.4 34.0 135 761-897 359-525 (562)
71 COG0018 ArgS Arginyl-tRNA synt 99.4 1.1E-09 2.4E-14 132.8 35.7 190 70-294 91-286 (577)
72 cd07958 Anticodon_Ia_Leu_BEm A 99.3 4.5E-11 9.7E-16 116.2 13.1 109 817-932 9-117 (117)
73 cd07957 Anticodon_Ia_Met Antic 99.2 8.3E-11 1.8E-15 116.4 12.4 84 848-932 35-129 (129)
74 cd07962 Anticodon_Ia_Val Antic 99.2 2.5E-10 5.4E-15 114.5 13.0 115 816-932 8-135 (135)
75 cd00802 class_I_aaRS_core cata 98.9 1.2E-09 2.6E-14 110.6 6.4 54 106-159 2-55 (143)
76 COG0495 LeuS Leucyl-tRNA synth 98.9 5.6E-09 1.2E-13 129.6 10.1 164 347-566 244-412 (814)
77 PF00750 tRNA-synt_1d: tRNA sy 98.5 2.2E-07 4.8E-12 108.2 9.7 167 100-295 19-193 (354)
78 cd07375 Anticodon_Ia_like Anti 98.5 1.4E-06 3.1E-11 84.1 11.6 103 816-921 6-117 (117)
79 PLN02286 arginine-tRNA ligase 98.3 3.2E-06 7E-11 104.3 10.7 169 100-295 116-284 (576)
80 cd09287 GluRS_non_core catalyt 97.8 4.5E-05 9.7E-10 83.0 7.8 37 109-150 7-43 (240)
81 PF01921 tRNA-synt_1f: tRNA sy 97.7 3.3E-05 7.2E-10 88.2 5.2 86 726-815 234-323 (360)
82 COG0215 CysS Cysteinyl-tRNA sy 97.7 9.7E-05 2.1E-09 86.5 8.9 121 102-303 24-146 (464)
83 PLN02286 arginine-tRNA ligase 97.7 0.00059 1.3E-08 84.5 15.6 161 729-893 331-536 (576)
84 PRK04156 gltX glutamyl-tRNA sy 97.5 0.00016 3.4E-09 87.9 8.0 61 759-819 324-400 (567)
85 COG1384 LysS Lysyl-tRNA synthe 97.3 0.00032 7E-09 82.4 5.6 106 101-262 19-125 (521)
86 TIGR00463 gltX_arch glutamyl-t 97.2 0.00059 1.3E-08 82.9 6.9 29 104-132 94-122 (560)
87 PTZ00402 glutamyl-tRNA synthet 96.9 0.002 4.2E-08 78.5 7.6 38 104-143 53-90 (601)
88 KOG2007 Cysteinyl-tRNA synthet 96.8 0.0039 8.5E-08 72.5 8.9 46 101-148 56-102 (586)
89 PLN03233 putative glutamate-tR 96.8 0.0025 5.5E-08 76.7 7.4 63 758-821 232-310 (523)
90 PLN02907 glutamate-tRNA ligase 96.6 0.0052 1.1E-07 77.6 8.9 38 104-143 214-251 (722)
91 TIGR00440 glnS glutaminyl-tRNA 96.5 0.0061 1.3E-07 73.6 7.9 33 109-143 6-38 (522)
92 PF00750 tRNA-synt_1d: tRNA sy 96.4 0.0023 4.9E-08 74.9 3.8 71 725-797 236-312 (354)
93 PLN02859 glutamine-tRNA ligase 96.4 0.0064 1.4E-07 76.0 7.4 36 106-143 267-302 (788)
94 PTZ00437 glutaminyl-tRNA synth 96.3 0.0063 1.4E-07 73.6 6.9 36 106-143 54-89 (574)
95 COG0008 GlnS Glutamyl- and glu 96.2 0.0095 2.1E-07 71.4 7.6 38 104-143 10-47 (472)
96 PF00749 tRNA-synt_1c: tRNA sy 96.2 0.013 2.8E-07 67.4 8.4 33 109-143 7-39 (314)
97 TIGR03838 queuosine_YadB gluta 96.2 0.021 4.5E-07 63.9 9.7 33 109-143 6-38 (272)
98 cd00807 GlnRS_core catalytic c 96.1 0.024 5.2E-07 61.9 9.4 33 109-143 7-39 (238)
99 PRK14895 gltX glutamyl-tRNA sy 96.1 0.016 3.5E-07 69.9 8.7 72 727-803 197-270 (513)
100 PRK05710 glutamyl-Q tRNA(Asp) 96.0 0.025 5.3E-07 64.1 9.4 33 109-143 11-43 (299)
101 cd00418 GlxRS_core catalytic c 96.0 0.029 6.2E-07 61.2 9.4 33 109-143 7-39 (230)
102 PRK05347 glutaminyl-tRNA synth 96.0 0.014 3.1E-07 70.7 7.5 59 761-819 258-332 (554)
103 PRK12410 glutamylglutaminyl-tR 95.9 0.021 4.6E-07 67.7 8.4 44 760-804 221-266 (433)
104 PRK14703 glutaminyl-tRNA synth 95.9 0.015 3.4E-07 73.3 7.4 38 104-143 32-69 (771)
105 cd00808 GluRS_core catalytic c 95.6 0.04 8.6E-07 60.5 8.6 25 109-133 7-31 (239)
106 TIGR00464 gltX_bact glutamyl-t 95.6 0.034 7.3E-07 67.4 8.5 73 727-804 198-272 (470)
107 PLN02627 glutamyl-tRNA synthet 95.3 0.051 1.1E-06 65.8 8.9 44 760-804 279-324 (535)
108 PRK12558 glutamyl-tRNA synthet 95.1 0.061 1.3E-06 64.2 8.5 44 760-804 226-271 (445)
109 PF01921 tRNA-synt_1f: tRNA sy 94.8 0.012 2.5E-07 67.8 1.2 126 100-283 22-148 (360)
110 PRK04156 gltX glutamyl-tRNA sy 94.6 0.062 1.3E-06 65.9 7.0 43 102-150 101-143 (567)
111 PRK01406 gltX glutamyl-tRNA sy 94.2 0.13 2.8E-06 62.5 8.5 72 728-804 209-282 (476)
112 cd00802 class_I_aaRS_core cata 94.2 0.055 1.2E-06 54.7 4.6 49 727-778 94-143 (143)
113 cd00395 Tyr_Trp_RS_core cataly 94.2 0.069 1.5E-06 60.1 5.8 55 725-783 152-208 (273)
114 COG1384 LysS Lysyl-tRNA synthe 93.6 0.22 4.9E-06 59.2 8.7 61 751-814 256-319 (521)
115 PRK13354 tyrosyl-tRNA syntheta 93.6 0.049 1.1E-06 64.7 3.3 58 725-786 185-243 (410)
116 PRK12556 tryptophanyl-tRNA syn 93.6 0.076 1.7E-06 61.4 4.7 58 725-783 148-212 (332)
117 cd00805 TyrRS_core catalytic c 93.2 0.1 2.2E-06 58.7 4.9 54 726-783 151-205 (269)
118 PRK12284 tryptophanyl-tRNA syn 93.2 0.11 2.3E-06 61.4 5.2 59 725-784 147-213 (431)
119 KOG1195 Arginyl-tRNA synthetas 92.5 0.91 2E-05 53.8 11.2 82 71-158 86-167 (567)
120 PRK05912 tyrosyl-tRNA syntheta 92.1 0.099 2.2E-06 62.2 3.0 73 725-803 187-260 (408)
121 PF00579 tRNA-synt_1b: tRNA sy 91.7 0.16 3.6E-06 57.8 4.1 59 725-785 148-211 (292)
122 PRK12282 tryptophanyl-tRNA syn 91.4 0.13 2.9E-06 59.4 3.0 58 725-785 141-208 (333)
123 PRK08560 tyrosyl-tRNA syntheta 89.3 0.3 6.5E-06 56.6 3.6 57 725-786 167-228 (329)
124 PTZ00126 tyrosyl-tRNA syntheta 89.3 0.33 7.2E-06 57.1 3.9 58 725-786 209-271 (383)
125 cd00418 GlxRS_core catalytic c 89.0 1.4 3.1E-05 48.2 8.3 73 727-804 110-184 (230)
126 PRK12285 tryptophanyl-tRNA syn 87.4 0.36 7.9E-06 56.6 2.6 59 725-786 202-265 (368)
127 PLN02563 aminoacyl-tRNA ligase 86.7 1.1 2.4E-05 59.0 6.7 77 549-628 211-303 (963)
128 PRK12283 tryptophanyl-tRNA syn 86.6 0.48 1E-05 55.6 3.0 31 756-786 245-277 (398)
129 TIGR00233 trpS tryptophanyl-tR 86.1 0.42 9.1E-06 55.3 2.2 59 725-785 138-205 (328)
130 PRK00927 tryptophanyl-tRNA syn 85.6 0.45 9.8E-06 55.2 2.2 61 725-786 137-209 (333)
131 KOG1147 Glutamyl-tRNA syntheta 85.2 2.1 4.7E-05 50.9 7.2 46 247-298 253-298 (712)
132 cd00806 TrpRS_core catalytic c 85.1 0.63 1.4E-05 52.7 2.9 60 725-786 136-205 (280)
133 COG0162 TyrS Tyrosyl-tRNA synt 84.7 0.52 1.1E-05 55.5 2.1 51 726-781 180-232 (401)
134 cd07956 Anticodon_Ia_Arg Antic 84.6 7.7 0.00017 39.7 10.5 105 790-896 2-117 (156)
135 TIGR00234 tyrS tyrosyl-tRNA sy 83.3 1 2.2E-05 53.1 3.8 56 726-785 177-233 (377)
136 COG0180 TrpS Tryptophanyl-tRNA 83.3 0.93 2E-05 51.6 3.3 58 725-784 144-210 (314)
137 TIGR00396 leuS_bact leucyl-tRN 83.1 0.86 1.9E-05 59.5 3.3 54 574-629 171-224 (842)
138 TIGR00464 gltX_bact glutamyl-t 81.0 4.6 0.0001 49.2 8.3 33 109-143 7-39 (470)
139 PRK00390 leuS leucyl-tRNA synt 79.0 3.6 7.8E-05 53.6 6.9 82 549-632 132-229 (805)
140 KOG4426 Arginyl-tRNA synthetas 78.8 1.7 3.6E-05 50.3 3.3 45 100-144 187-231 (656)
141 cd00808 GluRS_core catalytic c 75.8 4.6 0.0001 44.5 5.6 75 725-804 117-193 (239)
142 KOG0435 Leucyl-tRNA synthetase 70.9 1.5 3.2E-05 53.6 0.3 50 575-627 200-249 (876)
143 PTZ00348 tyrosyl-tRNA syntheta 70.3 3.6 7.8E-05 51.9 3.5 58 725-786 174-236 (682)
144 PLN02486 aminoacyl-tRNA ligase 68.4 3.7 8E-05 48.5 2.9 55 728-786 221-279 (383)
145 KOG1148 Glutaminyl-tRNA synthe 68.3 2.3 4.9E-05 51.2 1.1 19 104-122 249-267 (764)
146 PRK01406 gltX glutamyl-tRNA sy 65.9 12 0.00025 45.9 6.5 33 109-143 10-42 (476)
147 cd00807 GlnRS_core catalytic c 64.4 27 0.00058 38.5 8.3 88 727-819 122-226 (238)
148 cd00671 ArgRS_core catalytic c 57.3 18 0.00039 39.2 5.5 52 726-779 157-212 (212)
149 cd00395 Tyr_Trp_RS_core cataly 56.5 9.3 0.0002 43.2 3.2 32 111-146 7-39 (273)
150 PRK05347 glutaminyl-tRNA synth 56.3 25 0.00054 43.4 7.0 37 105-143 31-67 (554)
151 cd09287 GluRS_non_core catalyt 55.2 30 0.00066 38.2 6.8 59 762-820 155-229 (240)
152 PLN03233 putative glutamate-tR 54.8 41 0.0009 41.3 8.5 38 104-143 12-49 (523)
153 cd00805 TyrRS_core catalytic c 53.8 9.7 0.00021 42.9 2.8 32 111-146 8-40 (269)
154 PLN02886 aminoacyl-tRNA ligase 53.8 10 0.00023 44.7 3.2 16 725-740 183-198 (389)
155 PRK12285 tryptophanyl-tRNA syn 51.2 19 0.00041 42.5 4.7 41 101-146 65-105 (368)
156 TIGR00440 glnS glutaminyl-tRNA 48.6 46 0.001 41.0 7.5 52 763-814 231-298 (522)
157 PRK08560 tyrosyl-tRNA syntheta 47.8 18 0.00038 42.1 3.8 41 103-148 31-72 (329)
158 TIGR00234 tyrS tyrosyl-tRNA sy 47.6 15 0.00032 43.5 3.2 37 111-152 38-75 (377)
159 PLN02486 aminoacyl-tRNA ligase 43.7 31 0.00066 40.9 4.9 43 100-146 71-114 (383)
160 PF00579 tRNA-synt_1b: tRNA sy 43.7 19 0.00041 41.0 3.1 41 101-146 4-44 (292)
161 cd00806 TrpRS_core catalytic c 43.5 17 0.00037 41.2 2.7 33 111-146 7-39 (280)
162 PRK14703 glutaminyl-tRNA synth 40.4 78 0.0017 41.0 8.1 63 760-822 260-338 (771)
163 PRK14895 gltX glutamyl-tRNA sy 39.7 53 0.0012 40.3 6.2 33 109-143 10-42 (513)
164 TIGR00233 trpS tryptophanyl-tR 39.6 23 0.0005 41.1 3.0 38 104-146 4-41 (328)
165 PRK05912 tyrosyl-tRNA syntheta 38.9 26 0.00055 42.0 3.3 39 103-146 34-73 (408)
166 PRK12410 glutamylglutaminyl-tR 38.8 55 0.0012 39.4 6.0 33 109-143 5-37 (433)
167 PRK13354 tyrosyl-tRNA syntheta 35.5 40 0.00086 40.5 4.2 40 102-146 33-73 (410)
168 PRK00927 tryptophanyl-tRNA syn 34.9 26 0.00057 40.7 2.6 32 111-146 9-40 (333)
169 PTZ00402 glutamyl-tRNA synthet 34.6 1.5E+02 0.0033 37.2 9.0 60 761-820 276-351 (601)
170 PRK12284 tryptophanyl-tRNA syn 34.2 33 0.00072 41.0 3.2 32 111-144 10-41 (431)
171 PLN02907 glutamate-tRNA ligase 29.4 1.8E+02 0.0039 37.6 8.9 86 729-818 408-509 (722)
172 COG0180 TrpS Tryptophanyl-tRNA 29.0 58 0.0013 37.4 3.9 40 101-145 4-44 (314)
173 PTZ00437 glutaminyl-tRNA synth 28.2 77 0.0017 39.3 5.0 57 765-821 278-350 (574)
174 PLN02886 aminoacyl-tRNA ligase 28.0 41 0.00089 39.8 2.6 29 111-143 54-82 (389)
175 PRK12556 tryptophanyl-tRNA syn 26.6 55 0.0012 38.1 3.3 32 111-144 11-42 (332)
176 PRK12558 glutamyl-tRNA synthet 25.5 1.1E+02 0.0024 37.0 5.7 33 109-143 8-40 (445)
177 PLN02859 glutamine-tRNA ligase 25.1 1.1E+02 0.0025 39.3 5.9 57 762-818 488-561 (788)
178 KOG2145 Cytoplasmic tryptophan 22.3 76 0.0016 35.6 3.1 25 100-124 83-107 (397)
179 PRK12283 tryptophanyl-tRNA syn 22.2 65 0.0014 38.3 2.8 28 111-143 10-38 (398)
180 PLN02627 glutamyl-tRNA synthet 21.4 1.9E+02 0.0041 35.9 6.6 37 104-143 47-83 (535)
181 PTZ00126 tyrosyl-tRNA syntheta 21.4 64 0.0014 38.3 2.6 33 111-146 74-106 (383)
182 KOG2623 Tyrosyl-tRNA synthetas 20.6 93 0.002 36.4 3.5 59 725-785 226-285 (467)
No 1
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.4e-224 Score=2121.20 Aligned_cols=1077 Identities=81% Similarity=1.338 Sum_probs=971.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCC
Q 039882 60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGA 139 (1142)
Q Consensus 60 ~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~ 139 (1142)
..+++||++|.++|++||++|+++++|+.+++.+.+. ++++|++|+|||||||.||||||+|+|++||++||+||+||
T Consensus 6 ~~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~--~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~ 83 (1084)
T PLN02959 6 GKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPK--PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGA 83 (1084)
T ss_pred ccCCchhcCHHHHHHHHHHHHHhcCCcccCcccccCC--CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCC
Confidence 5689999999999999999999999999987643211 15899999999999999999999999999999999999999
Q ss_pred ceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCC-CCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhH
Q 039882 140 NVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEES-PQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQ 218 (1142)
Q Consensus 140 ~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 218 (1142)
||+|||||||||||||++|+|++++++++|++++||...+..+. +.+++.....+..++++|+++|++.++|++..++|
T Consensus 84 ~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~ 163 (1084)
T PLN02959 84 NVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQ 163 (1084)
T ss_pred ccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHH
Confidence 99999999999999999999999999999999889853332221 11111223345678899999999999999998999
Q ss_pred HHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceeccee
Q 039882 219 WEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRY 298 (1142)
Q Consensus 219 ~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~p 298 (1142)
|+||+++||++++|.+|+||.+|++||++.|+++|+|||+++||+|+|+|||.||+|++||+|||.+|+++|+||||.||
T Consensus 164 ~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rp 243 (1084)
T PLN02959 164 WEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRY 243 (1084)
T ss_pred HHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEE
Q 039882 299 TIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFE 378 (1142)
Q Consensus 299 v~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~ 378 (1142)
|+|||+|+|||||||++++++++|++|++|+|++.++++..+..+.+++++|+|||||||||||||||||||+.+|++++
T Consensus 244 v~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~ 323 (1084)
T PLN02959 244 TIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYE 323 (1084)
T ss_pred eeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEE
Confidence 99999999999999999999999999999999987644444434456678999999999999999999999999999999
Q ss_pred ecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCCh
Q 039882 379 ISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAP 458 (1142)
Q Consensus 379 ~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~ 458 (1142)
+++++.||||++++++|+||......++++++.+++|++|+|+.|.||+++.+.+||+|++||++++|||||||||||||
T Consensus 324 ~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~p 403 (1084)
T PLN02959 324 INDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSP 403 (1084)
T ss_pred ecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCH
Confidence 98789999999999999999876555679999999999999999999998655599999999999999999999999999
Q ss_pred hhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccc
Q 039882 459 DDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTM 538 (1142)
Q Consensus 459 ~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~ 538 (1142)
+||++++||++|++++++|||+++|+.+++++|+|+++++|+++|+++|+++||+||+|+++|+|||+.+|++||++|+|
T Consensus 404 dDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m 483 (1084)
T PLN02959 404 DDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTM 483 (1084)
T ss_pred HHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchh
Q 039882 539 LVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDEN 618 (1142)
Q Consensus 539 ~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~ 618 (1142)
.+|+|+|++|.+||++|+++|++.|+++.+++++.|||||||++|++++++||||+|++++||+++++++++|+|+|+++
T Consensus 484 ~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~ 563 (1084)
T PLN02959 484 LVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDET 563 (1084)
T ss_pred cCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHH
Confidence 99999999999999999999999999987888889999999999999999999999998899999999999999999999
Q ss_pred hhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEe
Q 039882 619 RHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIF 698 (1142)
Q Consensus 619 r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wF 698 (1142)
+++|.+||+|++||||||||+||||||||+.|+++|+||+++||++|+++|+++.++.+|.+.+.+.++++++|||||||
T Consensus 564 ~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF 643 (1084)
T PLN02959 564 RHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVF 643 (1084)
T ss_pred HHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEee
Confidence 99999999999999999999999999999999999999999999999999999876556665445788889999999999
Q ss_pred eCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccC
Q 039882 699 CGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKST 778 (1142)
Q Consensus 699 ds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~ 778 (1142)
+||++|.+++||.++++.++++|++|||+|+|++|+||++|||+|++++|+++++..|||++|++||||+.+|+|||||+
T Consensus 644 ~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSk 723 (1084)
T PLN02959 644 CGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKST 723 (1084)
T ss_pred cCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccC
Confidence 99999998899999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHH
Q 039882 779 GNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEI 858 (1142)
Q Consensus 779 GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l 858 (1142)
||||+|.++|++||||++||||++++++.+|++|+++.++.++.++.|+++|+.+++.....+........+|+|+++++
T Consensus 724 GNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l 803 (1084)
T PLN02959 724 GNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEI 803 (1084)
T ss_pred CCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999998887766542112222222257899999999
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCC
Q 039882 859 NIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGF 938 (1142)
Q Consensus 859 ~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~s 938 (1142)
+.++++++++|++|+|++|++.++|+|...+++|+.++.....++.+|+++|+.+++||||||||+|||||+.|++..+|
T Consensus 804 ~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr~~~~~~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~s 883 (1084)
T PLN02959 804 NIAIAETEKNYEAMMFREALKSGFYDLQAARDEYRLSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGF 883 (1084)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCe
Confidence 99999999999999999999998999999999999876433356789999999999999999999999999998766789
Q ss_pred eEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecCCChhhHHHHHHHH
Q 039882 939 AVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRIL 1018 (1142)
Q Consensus 939 v~~~~wP~~~~~d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~~~~~w~~~~~~~l 1018 (1142)
|+++.||.++..|+.++..++++++++.+||++++++.+..|++|.++. .......|.+|+||||++||+||++++++|
T Consensus 884 I~~~~wP~~~~~d~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~~k~~~~-~~~~~~~~~~v~IyVA~~yp~Wq~~~l~~l 962 (1084)
T PLN02959 884 AVTAGWPVAGEPDLTLKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGA-PVTLPEKKLAGLIYVAEKYDGWKEECLRIL 962 (1084)
T ss_pred EEecCCCCCCccCHHHHHHHHHHHHHHHHHHHhHHHhchhhhhcCCCCC-CcccccCcceEEEEECCCChHHHHHHHHHH
Confidence 9999999987668888888999999999999999998877776543221 101123467799999999999999999999
Q ss_pred HhhhhccCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCHHHHHHHHHHHHHHh
Q 039882 1019 QSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQ 1098 (1142)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE~~vL~~~~~yi~~~ 1098 (1142)
++.++.++++|++++++|.+++++.+.++...|+.+|++|+|++++++++++.|+++|.+.++|||.++|+++++||+++
T Consensus 963 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~l~~~~~~~~~~ 1042 (1084)
T PLN02959 963 QSKFDSQSRTFAPDAEILEALKESSVGQEANFKQVQKLCMPFVKFKKDEAIAVGPQALDLKLPFDEIEVLQENLELIKRQ 1042 (1084)
T ss_pred HHHHhhcccccCCHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHh
Confidence 99887766788888999998865555555567889999999999999889889999999999999999999999999999
Q ss_pred cCCceEEEEecCCcccccccCccccccCCCCCCCCCceeEE
Q 039882 1099 LGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIF 1139 (1142)
Q Consensus 1099 l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~a~PgkP~i~~ 1139 (1142)
||+++|+|+.++++...++.+...+...++.|+||+|+|+|
T Consensus 1043 ~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 1083 (1084)
T PLN02959 1043 LGLEEVEILSASDPDAVAKAGAHASLLKQNPPSPGNPVAIF 1083 (1084)
T ss_pred cCCcEEEEEecccccccccccccccccccccCCCCCCeeee
Confidence 99988999988775443332211222457899999999987
No 2
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-220 Score=1852.93 Aligned_cols=1059 Identities=59% Similarity=1.028 Sum_probs=973.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCC
Q 039882 60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGA 139 (1142)
Q Consensus 60 ~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~ 139 (1142)
.++..+|+.|.+||+++|+.|+++++|+.+.+....+ ++||||+++|+|||||.||+||+|+.++.||.+-|+||+|+
T Consensus 5 ~k~~ar~d~L~eiEk~~q~~W~~e~~fevda~~el~~--~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk 82 (1080)
T KOG0437|consen 5 LKSTARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQK--SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGK 82 (1080)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhheeccCchhccc--ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCc
Confidence 3467799999999999999999999999987543221 27999999999999999999999999999999999999999
Q ss_pred ceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHH
Q 039882 140 NVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQW 219 (1142)
Q Consensus 140 ~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 219 (1142)
+||||+|||||||||.++|+|++||++.+|.+|+||.+..++. ..|.++.+.....+|+++++|.++|+|..+|||
T Consensus 83 ~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv----~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw 158 (1080)
T KOG0437|consen 83 NVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEV----EEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQW 158 (1080)
T ss_pred eEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhh----hhcccccccccccccccchhhHHHhhcccchhH
Confidence 9999999999999999999999999999999999997422211 122233444444599999999999999999999
Q ss_pred HHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceee
Q 039882 220 EIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYT 299 (1142)
Q Consensus 220 ~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv 299 (1142)
+||+++|++++||.+|+||.+|+.|||+.+.+++++||+.+||||+|+|||.||+|++||+|||.+|.+.|.|.+|+|.+
T Consensus 159 ~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyT 238 (1080)
T KOG0437|consen 159 EIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYT 238 (1080)
T ss_pred HHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEe
Q 039882 300 IYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEI 379 (1142)
Q Consensus 300 ~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~ 379 (1142)
+|||+|+|||+|||+..||+|+||+|++||+++.++.|.++..+.+.++|+++||+|||||||+|+|+|+|+.+|+.++.
T Consensus 239 IyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~ 318 (1080)
T KOG0437|consen 239 IYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEA 318 (1080)
T ss_pred eecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEe
Confidence 99999999999999999999999999999999999888888888888899999999999999999999999999999998
Q ss_pred cC-CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCCh
Q 039882 380 SE-TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAP 458 (1142)
Q Consensus 380 ~~-~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~ 458 (1142)
.+ +++||+++++++||+||+++++.+.+..+.++.|.+|+|..+..|++.++.|++||+.+|..++|||||+|||+++|
T Consensus 319 ~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsP 398 (1080)
T KOG0437|consen 319 CNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSP 398 (1080)
T ss_pred cCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCc
Confidence 74 58999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred hhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccc
Q 039882 459 DDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTM 538 (1142)
Q Consensus 459 ~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~ 538 (1142)
|||.+++||++|+++ |||.++|+. ++++|||.++++|+++|+.+|.+++|+||||+++|+||++.+|.+|||+|+|
T Consensus 399 DDf~al~dL~kK~~l---Yg~~~ew~~-~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m 474 (1080)
T KOG0437|consen 399 DDFAALQDLKKKPEL---YGLKPEWVL-FEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM 474 (1080)
T ss_pred hhhhHHHhhhhcccc---cCCChhhcc-ccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE
Confidence 999999999999988 999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchh
Q 039882 539 LVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDEN 618 (1142)
Q Consensus 539 ~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~ 618 (1142)
.+|+|.|.+|.++++.|..+|++.|.++.|.||+.+|++|||++|||.|||||||+|++++||.++.++|++++.+.+++
T Consensus 475 lig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEt 554 (1080)
T KOG0437|consen 475 LIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDET 554 (1080)
T ss_pred EEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCC--CCCCCCCccceEE
Q 039882 619 RHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGS--IEPGQMTDEVWEF 696 (1142)
Q Consensus 619 r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~--~~~e~~~~dv~D~ 696 (1142)
|+.|+.+++||+.|+|||+.++||+||||++|+|||||||||||||||++|+|+. +++|...++ ++|+||+++||||
T Consensus 555 R~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~-d~~g~~~~plgi~~~QMtdeVwdY 633 (1080)
T KOG0437|consen 555 RNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR-DLYGKVEGPLGIKPDQMTDEVWDY 633 (1080)
T ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHH-hhccCCcccCCCChhhcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 999988775 8999999999999
Q ss_pred EeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccc
Q 039882 697 IFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSK 776 (1142)
Q Consensus 697 wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSK 776 (1142)
.|..+..+..+.++.+.|..+|++|+||||.|+|++|+|+|.|||+|+||+|+|+|+...||++|.+|||+++|++||||
T Consensus 634 vF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSK 713 (1080)
T KOG0437|consen 634 VFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSK 713 (1080)
T ss_pred hhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhcc
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHH
Q 039882 777 STGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFEN 856 (1142)
Q Consensus 777 S~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~ 856 (1142)
|.||+.++.+.|++||||++|+.||.+|+..+|+||.+..+|+++.||.+...|+.+++...+.++.++...+.|+.|.+
T Consensus 714 STGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~n 793 (1080)
T KOG0437|consen 714 STGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANAAILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFEN 793 (1080)
T ss_pred ccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876677777665699999999
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCC
Q 039882 857 EINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKD 936 (1142)
Q Consensus 857 ~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~ 936 (1142)
++|.+|+..+++|+...|++|++.+||+|+.++|+|++.+. ..++.+++..++++++.||+||+||+||+||+.+++..
T Consensus 794 emN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g-~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~ 872 (1080)
T KOG0437|consen 794 EMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCG-EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKN 872 (1080)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999988 45899999999999999999999999999999886655
Q ss_pred CCeEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecCCChhhHHHHHH
Q 039882 937 GFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLR 1016 (1142)
Q Consensus 937 ~sv~~~~wP~~~~~d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~~~~~w~~~~~~ 1016 (1142)
.||+. +||..++.++.+.....++++++..+|......+.++|++| |+. ...+.|.+.+|||+++||+||.++++
T Consensus 873 ~~v~~-~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~kkkk~-K~~---~~~~~p~~~ti~Vae~fp~Wq~~cl~ 947 (1080)
T KOG0437|consen 873 FSVNV-GWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKKKKKK-KGA---EVPSKPLKLTIYVAEEFPEWQAQCLS 947 (1080)
T ss_pred ceeec-CCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchhhccc-CCC---CCCCCcceEEEEEeccCCHHHHHHHH
Confidence 56654 99999887777766667889999999888777765543332 322 23568999999999999999999999
Q ss_pred HHHhhhhccCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCHHHHHHHHHHHHH
Q 039882 1017 ILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIK 1096 (1142)
Q Consensus 1017 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE~~vL~~~~~yi~ 1096 (1142)
+|+.+++..+..|+ ++++++.+. .+...+|+.+|.+|+|+++.++++...|.+++++.++|||.+||++++.||+
T Consensus 948 il~k~~~e~~~~~~-d~k~i~~~~----~k~~~lk~~~K~~mpFi~~~K~~~~~~~~~~~~~~l~F~E~evL~~~k~~i~ 1022 (1080)
T KOG0437|consen 948 ILQKIFCEQTGKFP-DKKVISSLE----GKEVPLKAVMKVAMPFIQMIKQRLINKGNSALNRSLPFNEIEVLKENKDYIE 1022 (1080)
T ss_pred HHHHHHHHhcCCCC-hHHHHHhcc----cccchHHHHHHHhhhHHHHHHHHHHhcccchhhhcCCccHHHHHHHHHHHHH
Confidence 99999998888885 556666652 2234578999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEecC-CcccccccCc---------ccc-c-cCCCCCCCCCceeEEE
Q 039882 1097 RQLGLEEVEILSAT-DPDALSKAGS---------LSS-L-LKQNPPSPGNPTAIFL 1140 (1142)
Q Consensus 1097 ~~l~~~~v~v~~~~-~~~~~~~~~~---------~~~-~-~~~~~a~PgkP~i~~~ 1140 (1142)
+.+|+++|+|.+.. +++..+-+.| ... + ....++.||.|.+.|.
T Consensus 1023 ~~lgle~i~i~~~s~~~~~~~~a~p~~~l~~~~~~~p~i~~~~~n~~p~n~~f~~~ 1078 (1080)
T KOG0437|consen 1023 NNLGLEEIEIVSASADADIVSAADPGVPLLEFKPPSPGIPTAIFNTVPGNPGFVFQ 1078 (1080)
T ss_pred hccCceEEEEEeccCCcccccccCCCCcccccCCCCCCCCcceeeccCCCCceeec
Confidence 99999999998865 2221110000 000 0 2256788888888775
No 3
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.3e-187 Score=1774.24 Aligned_cols=931 Identities=38% Similarity=0.705 Sum_probs=828.7
Q ss_pred HHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 71 ~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
++|++||++|+++++|+.+++. +++|+|++|||||||.|||||++|++++|+++||+||+||+|+||||||||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~~-------~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~ 74 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPDD-------REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVT 74 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCCC-------CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCC
Confidence 5899999999999999987642 589999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChh
Q 039882 151 GMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDS 230 (1142)
Q Consensus 151 GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~ 230 (1142)
||||+++|+|++++.+..+. .| ....+++++
T Consensus 75 G~pi~~~aek~~~~~~~~~~--~~-----------------------------------------------~~~~~i~~~ 105 (938)
T TIGR00395 75 GTPILGLAELIKRRDELTIK--NY-----------------------------------------------TEVHAIPRE 105 (938)
T ss_pred CCchHHHHHHhhhhhhhccc--cc-----------------------------------------------hhhccCCHH
Confidence 99999999987664332220 00 012368999
Q ss_pred HHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCcccc
Q 039882 231 EISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCA 310 (1142)
Q Consensus 231 ~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~la 310 (1142)
+|.+|++|++|+++|++.++++|++||+++||+|+|+||| |+|.++|+|+|.+|+++|+||+|.+||+|||+|+|+||
T Consensus 106 ~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~d--p~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~ls 183 (938)
T TIGR00395 106 ELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTD--PYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVE 183 (938)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCC--hhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCc
Confidence 9999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehH
Q 039882 311 DHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTER 390 (1142)
Q Consensus 311 d~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~ 390 (1142)
|||+++++++++++|++|+|++.+ .+.+|+|||||||||||||||||||+++|++++++ +++|||+++
T Consensus 184 d~e~~~~e~~~~~~~~~ikf~~~~-----------~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~-~e~~i~s~~ 251 (938)
T TIGR00395 184 DHDLLSGEGVTIVEYILIKFELED-----------GAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVG-GEKWITSKE 251 (938)
T ss_pred hhHhccCCccccceEEEEEEEcCC-----------CceEEEEeeCCcchhhcceeEEECCCCcEEEEEeC-CcEEEEeHH
Confidence 999999999999999999998754 24689999999999999999999999999999986 589999999
Q ss_pred HHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccC
Q 039882 391 AALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAK 470 (1142)
Q Consensus 391 ~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~ 470 (1142)
++++|+||.. .++++++++|++|+|+++.||++ ++.+||++++||++++|||+|||||||||+||+++++|+++
T Consensus 252 ~~~~~~~q~~-----~~~~~~~~~g~~l~G~~~~~P~~-~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~ 325 (938)
T TIGR00395 252 AFENLSYQKL-----KYKPIEEVPGKQFIGKKVHNPVV-GPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHD 325 (938)
T ss_pred HHHhhhhccc-----ceeEEEEEchHhccCCEEECCCC-CCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhc
Confidence 9999999852 47899999999999999999987 57899999999999999999999999999999999999877
Q ss_pred hhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc--ccCCCCcch
Q 039882 471 PAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML--VGDFAGKKV 548 (1142)
Q Consensus 471 ~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~--~g~~~G~~v 548 (1142)
+++ |||+++|. ++++++||+++++|+++|+.+|+++||+||+|+.+|++||+.+|++||++|+|+ +|+|+|++|
T Consensus 326 ~~~---~gi~~~~~-~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v 401 (938)
T TIGR00395 326 PEY---LGIKPVVI-DIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKV 401 (938)
T ss_pred chh---cCCcchhc-ccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCH
Confidence 543 99988764 688999999999999999999999999999999999999999999999999997 469999999
Q ss_pred HhhhHHHHHHHHHcCCeeeeecc-CccccccCCCeEEEc-ccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhh
Q 039882 549 QDAKPLIRSKLIETGEAIMYSEP-EKRVMSRSGDECVVA-LTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTL 626 (1142)
Q Consensus 549 ~ea~~~I~~~L~~~g~l~~~~e~-~~~v~~Rsg~~~i~~-~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i 626 (1142)
.+||++|+++|++.|.++.++++ ++|||||||+||+++ +++||||+|++++||+++++++++++|+|+.++++|.+||
T Consensus 402 ~ear~~i~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l 481 (938)
T TIGR00395 402 SEAKEKVKADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKI 481 (938)
T ss_pred HHhHHHHHHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHH
Confidence 99999999999999999988887 889999999999998 9999999999889999999999999999999999999999
Q ss_pred hcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC
Q 039882 627 GWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES 706 (1142)
Q Consensus 627 ~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~ 706 (1142)
+|++||||||||+||||||||+.|+|+|++|++|||++|+++|+++.. .+.+++++++|||+||+++..+..
T Consensus 482 ~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~--------~~~~~~l~~ev~D~~~~~~~~~~~ 553 (938)
T TIGR00395 482 DWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD--------YYGNEQMTDEFFDYIFLGKGDVKN 553 (938)
T ss_pred hhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--------CCChHHCCcccCceEEECCCChhh
Confidence 999999999999999999999899999999999999999999998742 134567789999999998777777
Q ss_pred CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHH
Q 039882 707 SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQ 786 (1142)
Q Consensus 707 ~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~ 786 (1142)
+++|.+.++.++++|++|||+|+|++|+||++||+.|++++|+++++..+||++|++||||+.+|+|||||+||+|+|.+
T Consensus 554 t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d 633 (938)
T TIGR00395 554 TNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQ 633 (938)
T ss_pred cCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHH
Confidence 89998877777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 039882 787 AIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTD 866 (1142)
Q Consensus 787 ~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~ 866 (1142)
+|++||||++||||++++++++|++|+++.++..+++++++.+++..+....+ ...+......|+|++++++.++++++
T Consensus 634 ~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~-~~~~~~~~~~D~wlls~l~~~i~~v~ 712 (938)
T TIGR00395 634 AVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN-LETGEETSFIDRWLESRMNAAIKETY 712 (938)
T ss_pred HHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999899999999999998888878887777766543211 11111224789999999999999999
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCC
Q 039882 867 QHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPT 946 (1142)
Q Consensus 867 ~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~ 946 (1142)
++|++|+|+.|++.++|+|...+|+|++..+. ....++.++++.+++||+|||||+||+||+.| +.++||++++||+
T Consensus 713 ~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~--~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~L-g~~~sv~~~~wP~ 789 (938)
T TIGR00395 713 EAMENFQTRKAVKYALFDLQADVDWYRRRGGV--NHKDVLARYLETWIKLLAPFAPHFAEEMWEEV-GNEGFVSLAKFPE 789 (938)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHhcCcccHHHHHHHHHc-CCCCeEEecCCCC
Confidence 99999999999977789999899999886432 34558999999999999999999999999987 6678999999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecCCChhhHHHHHHHHHhhhhc
Q 039882 947 YGTP--DLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDS 1024 (1142)
Q Consensus 947 ~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~~~~~w~~~~~~~l~~~~~~ 1024 (1142)
+++. |+.++.+++++++++.+||+..+. + ...|.+++||+++ +||.++++++.+..+.
T Consensus 790 ~~~~~~d~~~~~~~~~~~~~i~~iR~~~~~----------~-------~~~p~~~~i~~~~---~w~~~~~~~~~~~~~~ 849 (938)
T TIGR00395 790 ASEPAVDKEVEAAEEYLRNLVRDIQEIAKI----------D-------ASKPKRVYLYTSE---DWKSQCLKIVAELFGE 849 (938)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhcc----------C-------CCCCcEEEEEECc---HHHHHHHHHHHHHhcc
Confidence 8865 899999999999999999985211 1 1246789999995 7999999999996643
Q ss_pred cCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCHHHHHHHHHHHHHHhcCCceE
Q 039882 1025 KSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEV 1104 (1142)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE~~vL~~~~~yi~~~l~~~~v 1104 (1142)
+++++|+.+.+ + ++.+|++|+|++++++.+++.|+ ...++|||.++|+++++||+++||++ |
T Consensus 850 ------~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~l~~~~~~~~~~~~~~-~ 911 (938)
T TIGR00395 850 ------DTGEDMKKVME-----E---PEERKRGKEVISLVKQIIKDEKK---EDELQISEIEVLKAAARFIKKEVGAL-V 911 (938)
T ss_pred ------cHHHHHHHhhc-----C---HHHHHHHHHHHHHHHHHHHhccc---cccCCCCHHHHHHHHHHHHHHhcCCe-E
Confidence 35677776531 1 34478899999999988877665 45679999999999999999999996 4
Q ss_pred EEEecCCcccccccCccccccCCCCCCCCCceeEEE
Q 039882 1105 EILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFL 1140 (1142)
Q Consensus 1105 ~v~~~~~~~~~~~~~~~~~~~~~~~a~PgkP~i~~~ 1140 (1142)
.++.+++++.. .+++.|+||||+|+|+
T Consensus 912 ~~~~~~~~~~~---------~~~~~a~p~~p~i~~~ 938 (938)
T TIGR00395 912 IIEFSADSFPE---------NKKRNAVPGKPAIYLE 938 (938)
T ss_pred EEEeccCCccc---------cccccCcCCCCeEeeC
Confidence 44444332111 3467899999999985
No 4
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-178 Score=1682.32 Aligned_cols=885 Identities=37% Similarity=0.674 Sum_probs=791.1
Q ss_pred CchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCC
Q 039882 116 LHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGG 195 (1142)
Q Consensus 116 LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1142)
|||||++|++++|+++||+||+||+|+|||||||||||||++|+++++ |.
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~-----~~------------------------- 50 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR-----GD------------------------- 50 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc-----cc-------------------------
Confidence 799999999999999999999999999999999999999999987543 21
Q ss_pred CChhhHHHHHHHHHHhhcchhhHHHHHHhc-CCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChh
Q 039882 196 APLDKFKSKKSKAAAKSGVQMYQWEIMRSF-GLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPF 274 (1142)
Q Consensus 196 ~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~-~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~ 274 (1142)
..|+++++++ |+++++|++|++|++|+++|.+.++++|++||+++||+|+|+||| |+
T Consensus 51 --------------------~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~d--p~ 108 (897)
T PRK12300 51 --------------------PETIELYKSLYGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTD--PE 108 (897)
T ss_pred --------------------hhHHHHHHHHcCCCHHHHHHhcCHHHHHHHhHHHHHHHHHHhCcEEeCCCCeECCC--hh
Confidence 1366667665 999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEee
Q 039882 275 FDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAAT 354 (1142)
Q Consensus 275 y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~T 354 (1142)
|+++|+|+|.+|+++||||||.|||+|||+|+|+|||||+++++.+++++|++|+|+ . +.+.+|+|||
T Consensus 109 y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~~ikf~--~----------~~~~~l~~~T 176 (897)
T PRK12300 109 YSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYTLIKFE--E----------SEDLILPAAT 176 (897)
T ss_pred HHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEEEEEEe--C----------CCceEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 2 2357999999
Q ss_pred cCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEE
Q 039882 355 LRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIY 434 (1142)
Q Consensus 355 trPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~ 434 (1142)
|||||||||+||||||+++|++++++ +++||+|++++.+++||. ++++++.+++|++|+|++|.|||+ ++.+|
T Consensus 177 trPeTl~g~tai~V~P~~~Y~~~~~~-~e~~i~a~~~~~~~~~~~-----~~~~~~~~~~G~~l~G~~~~~Pl~-~~~ip 249 (897)
T PRK12300 177 LRPETIFGVTNLWVNPDATYVKAEVD-GEKWIVSKEAAEKLSFQD-----RDVEIIEEIKGSELIGKKVKNPVT-GKEVP 249 (897)
T ss_pred CCcchhccceEEEECCCCcEEEEEEC-CEEEEEeHHHHHHHhcCc-----CCceEEEEeehHHhcCCEEECCCC-CCeEE
Confidence 99999999999999999999999985 799999999999999983 468899999999999999999997 47899
Q ss_pred EccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccc
Q 039882 435 ALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKS 514 (1142)
Q Consensus 435 il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s 514 (1142)
|++++||++++|||+||+|||||++||+++++++.++++ +|+ ++++|+|.++++|+++|+++|++++|+|
T Consensus 250 il~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~---~~~-------l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 250 ILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKEL---LDV-------IEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred EeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhcccccc---ccc-------cCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 999999999999999999999999999999887654322 232 4677899999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcccccccccc--ccCCCCcchHhhhHHHHHHHHHcCCeeeeec-cCccccccCCCeEEEcc-cCc
Q 039882 515 QNEKDKLAEAKRLTYLRGFTEGTML--VGDFAGKKVQDAKPLIRSKLIETGEAIMYSE-PEKRVMSRSGDECVVAL-TDQ 590 (1142)
Q Consensus 515 ~~d~~~l~ea~~~~y~~~f~~g~~~--~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e-~~~~v~~Rsg~~~i~~~-~~Q 590 (1142)
|+|.+ |++||+.+|++||++|+|+ +|+|+|++|.|||++|++.|+++|.++.+++ +++|+|||||+|||+++ ++|
T Consensus 320 ~~d~~-l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~Q 398 (897)
T PRK12300 320 QEDPE-LEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQ 398 (897)
T ss_pred ccchh-HHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCc
Confidence 99998 9999999999999999997 4999999999999999999999999998887 46799999999999985 699
Q ss_pred cceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhh
Q 039882 591 WYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHM 670 (1142)
Q Consensus 591 WFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~ 670 (1142)
|||+|++++||+++++++++|+|+|++++++|.+||+|++||||||||+||||||||+.|+|+|++|++|||++|+++|.
T Consensus 399 WFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~ 478 (897)
T PRK12300 399 WFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHK 478 (897)
T ss_pred eEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCcccCCCCCCCCCCCCCccceEEEeeCCCCC----CCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHH
Q 039882 671 LHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYP----ESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIY 746 (1142)
Q Consensus 671 l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~----~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~ 746 (1142)
++. .| +.++++.+++||+||.++..+ ..+|+|.+.+..++++|++|||+|+|++|+||++||+.|+++
T Consensus 479 l~~---~g-----~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~ 550 (897)
T PRK12300 479 IRE---YG-----IKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIF 550 (897)
T ss_pred HHH---cC-----CChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHHHHHH
Confidence 874 12 456678899999999976543 347899988888889999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHH
Q 039882 747 NHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTK 826 (1142)
Q Consensus 747 ~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n 826 (1142)
+|+++++..+||++|++||||+.+|+|||||+||+|+|.++|++||||++||||++++++++|++|+++.++...+.+.+
T Consensus 551 ~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r 630 (897)
T PRK12300 551 NHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLER 630 (897)
T ss_pred HHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999998876555555
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHH
Q 039882 827 EIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLV 906 (1142)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l 906 (1142)
+.+++....... .... ....|+|+++++++++++++++|++|+|++|++.+++.+.+.+|+|++.+++ .+..++
T Consensus 631 ~~~~~~~~~~~~---~~~~-~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~--~~~~~l 704 (897)
T PRK12300 631 FYELAKELIEIG---GEEE-LRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVGE--ANNKVL 704 (897)
T ss_pred HHHHHHHHhcCC---Cccc-cCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHH
Confidence 444444333211 1112 2478999999999999999999999999999988766688889999988765 567799
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 039882 907 WRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQILGSKKANK 984 (1142)
Q Consensus 907 ~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~ 984 (1142)
+++++.+++||+|||||+||+||+.| +.++||+++.||++++. |+.++.++++++++++++|++++...
T Consensus 705 ~~~l~~~~~lLaPf~P~~aEeiw~~L-~~~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~ir~~~~~~~-------- 775 (897)
T PRK12300 705 REVLEIWIRLLAPFTPHLAEELWHKL-GGEGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDIREILKVAK-------- 775 (897)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHc-CCCCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 99999999999999999999999987 66689999999998864 89999999999999999999986531
Q ss_pred CCCCCcCccCCCcEEEEEecCCChhhHHHHHHHHHhhhhccCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHh
Q 039882 985 KGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFK 1064 (1142)
Q Consensus 985 ~~~~~~~~~~~~~~v~i~va~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~ 1064 (1142)
+ .+++|+||++ ++|+.++++++.+.+|. ++++..++ ..+.+|+.+|++|+|++.+
T Consensus 776 -~--------~~~~~~i~~~---~~~~~~~~~~~~~~~n~--------k~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 830 (897)
T PRK12300 776 -I--------KPKKVYIYVA---PDWKYEVLEIAAENGDV--------KEAIKELM-----KDEELRKHGKEVAKLAQKI 830 (897)
T ss_pred -C--------CCceEEEEEC---CHHHHHHHHHHHHhhcH--------HHHHHHHh-----ccchHHHHHHHHHHHHHHH
Confidence 1 3578999998 57999999999886643 45555442 3556788899999999999
Q ss_pred HHHHhhcChhhhc-cCCCCCHHHHHHHHHHHHHHhcCCceEEEEecCCcccccccCccccccCCCCCCCCCceeEEE
Q 039882 1065 KDEAKAIGPQALD-LKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFL 1140 (1142)
Q Consensus 1065 ~~~~~~~g~~al~-~~~~fdE~~vL~~~~~yi~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~a~PgkP~i~~~ 1140 (1142)
++.+...|+++++ .+++|||.++|+++++||+++||+ +|+|+++++++.. +.++.|+||||+|+|+
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~-~v~i~~~~~~~~~---------~~~~~a~p~~p~i~~~ 897 (897)
T PRK12300 831 VKEVLKLDKEVRKLILKNIDEEEVLEEAKDFLEKELGV-EVEIYGADDPGKK---------KKKKKALPLKPAIYIE 897 (897)
T ss_pred HHHHHhcChhhhhcccCCCCHHHHHHHHHHHHHHhhCc-eEEEEECCCCccc---------cccccCcCCCCeEeeC
Confidence 9999888999988 778999999999999999999999 7999988765431 2245699999999985
No 5
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-166 Score=1514.59 Aligned_cols=796 Identities=20% Similarity=0.330 Sum_probs=668.2
Q ss_pred ChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCC-CCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhH
Q 039882 48 SFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPG-ERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSK 126 (1142)
Q Consensus 48 ~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~-~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~ 126 (1142)
++..|++|| +|.||||++|+++|++++++|+++++|++..+ .+++ +|+|++|||||||||.+|||||+|+++
T Consensus 2 ~~k~tl~lp---~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g----~~~FvfhDGPPyANG~iHiGHalnKil 74 (933)
T COG0060 2 DYKDTLNLP---KTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKG----KPKFVLHDGPPYANGNIHIGHALNKIL 74 (933)
T ss_pred CccccccCc---cCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCC----CCcEEEeCCCCCCCCCcchhhhHHHhh
Confidence 467789999 99999999999999999999999999998874 4443 799999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHH
Q 039882 127 LEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKS 206 (1142)
Q Consensus 127 ~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1142)
||||.||++|+||+|.|.|||||||||||.+|+| ++|.. .+....++.++|+++|+
T Consensus 75 KDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek------~lg~~------------------k~~i~~~~~~efr~~Cr 130 (933)
T COG0060 75 KDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEK------KLGIG------------------KKDIESFGVEEFREKCR 130 (933)
T ss_pred hhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHH------HhCCC------------------cchhhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999986 45632 11123467789999999
Q ss_pred HHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHH
Q 039882 207 KAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKL 286 (1142)
Q Consensus 207 ~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L 286 (1142)
+++.+ |. +.|+++|+|||+++||+++|.||| |.|++.++|.|.+|
T Consensus 131 ~~a~~------~v---------------------------~~q~~~f~RLGv~~Dw~npY~Tmd--~~ye~~~~~~f~~~ 175 (933)
T COG0060 131 EFALE------QV---------------------------DEQKEQFKRLGVWGDWENPYKTMD--PSYEESVWWAFKEL 175 (933)
T ss_pred HHHHH------HH---------------------------HHHHHHHHhheEeeccCCCeecCC--HHHHHHHHHHHHHH
Confidence 88765 21 468899999999999999999998 99999999999999
Q ss_pred HHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEE
Q 039882 287 KSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNA 366 (1142)
Q Consensus 287 ~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai 366 (1142)
+++||||||.|||+|||+|+|+||+||++|++..+|+.| |+|++.+. + ...+.+++||||||||||+|.||
T Consensus 176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIy--V~F~v~~~--~-----~~~~~~lviWTTTPWTLPaN~ai 246 (933)
T COG0060 176 YEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIY--VKFPVKDE--G-----LDENAYLVIWTTTPWTLPANLAI 246 (933)
T ss_pred HHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEE--EEEEeccC--C-----CCCCcEEEEEeCCCCCchhccee
Confidence 999999999999999999999999999999999999877 67777642 0 23578999999999999999999
Q ss_pred EECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCC---CceEEEccCCcccc
Q 039882 367 WVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSF---NEVIYALPMLTILT 443 (1142)
Q Consensus 367 ~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~---~~~v~il~~~~V~~ 443 (1142)
+||||.+|++|+++ ++.||+|+.+++.+.-. . + ...++++++++|++|.|..|.|||.. ...+||+.++||+.
T Consensus 247 av~pd~~Y~lv~~~-~~~~IlA~~lve~~~~~-~-~-~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~ 322 (933)
T COG0060 247 AVHPDLDYVLVEVN-GEKLILAKALVESVAKK-A-G-VEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTL 322 (933)
T ss_pred EeCCCcceEEEEEC-CEEEEEhHHHHHHHHHH-c-C-CcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEec
Confidence 99999999999996 48999999998874321 1 1 11278999999999999999999985 46799999999999
Q ss_pred CCCCCccccCCCCChhhHHHHhhhccChhHHHhhC-CCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHH
Q 039882 444 DKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFG-VKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLA 522 (1142)
Q Consensus 444 ~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~g-l~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ 522 (1142)
+.|||+||+|||||+|||.+| ++|| ++. +.| +++.|.+++.
T Consensus 323 d~GTG~VHtAPghGeeDy~vg----------~~~g~l~v-------~~p---VD~~G~yt~~------------------ 364 (933)
T COG0060 323 DDGTGLVHTAPGHGEEDYEVG----------KKYGLLEV-------LNP---VDDNGRYTEE------------------ 364 (933)
T ss_pred CCCccceecCCCCCHHHHHHH----------HHcCCcCC-------ccc---cCCCcccccc------------------
Confidence 999999999999999999988 5688 432 123 3677775431
Q ss_pred HHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeee--ccCccccccCCCeEEEcccCccceecCchHH
Q 039882 523 EAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDECVVALTDQWYITYGEEEW 600 (1142)
Q Consensus 523 ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~ 600 (1142)
++.|.|+.|.+|++.|++.|++.|.|++.+ +|+|||||||++|+|||+|+||||+++ ++
T Consensus 365 -----------------~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~--~~ 425 (933)
T COG0060 365 -----------------APKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVD--KL 425 (933)
T ss_pred -----------------chhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHH--HH
Confidence 478999999999999999999999998654 489999999999999999999999996 79
Q ss_pred HHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCC-
Q 039882 601 KRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGS- 679 (1142)
Q Consensus 601 k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~- 679 (1142)
|+++++++++++|+|+++++||.+||++++||||||||+||||||. |+++..++..++ ......+..+..+..|.
T Consensus 426 r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi---~~~~~~g~~~~~-~~El~e~~~~~~~~~g~~ 501 (933)
T COG0060 426 RDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPV---WYCKETGEILVI-TEELEELVGQLVEEKGID 501 (933)
T ss_pred HHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeE---EEECCCCCeecc-HHHHHHHHHHHhhhcCch
Confidence 9999999999999999999999999999999999999999999994 566554322111 22333333221111111
Q ss_pred ---------------CCC-CCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCc---ceEEeecccchhh
Q 039882 680 ---------------TTG-SIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPF---DLRVSGKDLIQNH 740 (1142)
Q Consensus 680 ---------------~~~-~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~---Dl~~~G~D~ir~h 740 (1142)
.+| .++ .++||||||||||++|.+.--|.+ +.++|. |+|+||+||+|||
T Consensus 502 ~w~~~~idel~~~~~~~g~~~~---rv~DvlDVWFDSGs~~~a~~~~~~---------~~~~~~~~aD~~lEGsDQ~RGW 569 (933)
T COG0060 502 DWHRPDIDELLPPCPEDGKEYR---RVPDVLDVWFDSGSTPYAVLHPRE---------NLKFPALFADFYLEGSDQTRGW 569 (933)
T ss_pred hhhccchHhhcCCCCCCcceeE---ecCcceEEEEcCCCCcccccCCcc---------cccCccccCcEEEEeccccchh
Confidence 112 111 268999999999999876322332 134555 9999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH-
Q 039882 741 LTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN- 818 (1142)
Q Consensus 741 l~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~- 818 (1142)
|++++.+++++++..|+ ++|++|||++ .+|+|||||+||+|+|.+++++||||+||||++++ ++++|+.||++.++
T Consensus 570 F~Ssl~~s~a~~~~aPY-k~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ss-d~~~dl~~s~~il~~ 647 (933)
T COG0060 570 FYSSLLTSTALFGRAPY-KNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASS-DYWEDLRFSDEILKQ 647 (933)
T ss_pred HHHHHHHHHHHcCCchH-HHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeec-CchhccccCHHHHHH
Confidence 99999999999999999 9999999999 89999999999999999999999999999999999 59999999998765
Q ss_pred --HHHHHHHHHHHHHHHHHhhhccCC----CCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH--HhhhH
Q 039882 819 --TGILRLTKEIAWMEEVLAVESSLR----TGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL--QAARD 890 (1142)
Q Consensus 819 --~~~~kl~n~~~~~~~~~~~~~~~~----~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l--~~~~~ 890 (1142)
..++++||+++|+..++.+++.-. ..++ ..+|+|++++++.++++++++|++|+|++|++. +.+| ..+.+
T Consensus 648 ~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~-~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~-l~~F~~~dLS~ 725 (933)
T COG0060 648 VREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEEL-RELDRWILSRLNSLVKEVREAYENYDFHKVVRA-LMNFVSEDLSN 725 (933)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccchhhc-chhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhhhhH
Confidence 568899999999999877654211 1122 478999999999999999999999999999997 4444 46778
Q ss_pred HHHHhcCCc-----------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC--CCCeEeccCCCCCCCCHHHHHH
Q 039882 891 EYRLSCGAG-----------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK--DGFAVKAGWPTYGTPDLILKSA 957 (1142)
Q Consensus 891 ~Y~~~~~~~-----------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~--~~sv~~~~wP~~~~~d~~l~~~ 957 (1142)
+|++..+.+ .+++.+|+++|..++++||||+||+||+||++|.+. .+|||+++||+........+..
T Consensus 726 ~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~~~~~~ 805 (933)
T COG0060 726 WYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAA 805 (933)
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCCCCceeEeccCCcccccccchhHH
Confidence 887765431 357889999999999999999999999999999766 6899999999987651111222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecC
Q 039882 958 NKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNE 1005 (1142)
Q Consensus 958 ~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~ 1005 (1142)
...-++....+|.-+++.++.+|..+++++ +..++++|+++.
T Consensus 806 ~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~------~lnak~~~~~~~ 847 (933)
T COG0060 806 LAARWEALLKLRDPVNKALEAARLEKVIGS------SLNAKVVIYTED 847 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhh------cceeEEEEeecc
Confidence 233357788999999999999898876554 578899999874
No 6
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.5e-157 Score=1491.01 Aligned_cols=808 Identities=19% Similarity=0.277 Sum_probs=657.2
Q ss_pred ccChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhh
Q 039882 46 NHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFS 125 (1142)
Q Consensus 46 ~~~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~ 125 (1142)
.++|++|++|| +|+||||+++.++|++||++|+++++|++..+.+.+ +++|++|+|||||||.||||||+|+|
T Consensus 6 ~~~y~~tl~lp---~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~----~~~f~l~dgPPyanG~lHiGHaln~~ 78 (961)
T PRK13804 6 AMDYKKTLNLP---QTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKG----RPKFVLHDGPPYANGNIHIGHALNKI 78 (961)
T ss_pred cCchHhhcCCC---CCCCCCCCChHHhHHHHHHHHHHCCCccccccccCC----CCcEEEeCCCCCCCCCccHHHHHHHH
Confidence 35899999999 999999999999999999999999999987654332 68999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHH
Q 039882 126 KLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKK 205 (1142)
Q Consensus 126 ~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1142)
++||++||+||+||+|+|+|||||||||||.+|+|.. ...|. +++++++.+|+++|
T Consensus 79 lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~---~~~~~---------------------~~~~~~~~~f~~~c 134 (961)
T PRK13804 79 LKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY---RAKGK---------------------NKDEVPVAEFRKEC 134 (961)
T ss_pred HHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh---hhcCC---------------------ChHhCCHHHHHHHH
Confidence 9999999999999999999999999999999997621 11121 22345556666665
Q ss_pred HHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHH
Q 039882 206 SKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRK 285 (1142)
Q Consensus 206 ~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~ 285 (1142)
+ +|++++...|++||+|||+++||+|+|.||| |.|+++++|+|.+
T Consensus 135 ~---------------------------------~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d--~~y~~~~~~~F~~ 179 (961)
T PRK13804 135 R---------------------------------EYALSWIDVQREEFKRLGVLGDWDNPYTTMD--FHAEARIAREFGK 179 (961)
T ss_pred H---------------------------------HHHHHHHHHHHHHHHHhCceecCCCCcCcCC--HHHHHHHHHHHHH
Confidence 4 4555556789999999999999999999998 9999999999999
Q ss_pred HHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcE
Q 039882 286 LKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTN 365 (1142)
Q Consensus 286 L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~a 365 (1142)
|+++||||||.+||+|||.|+|+|||+||+|.+..+++.| |+|++.++ +. + + +.+.+++||||||||||||+|
T Consensus 180 l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~--v~F~~~~~-~~-~--~-~~~~~lviwTTtPwTl~an~a 252 (961)
T PRK13804 180 FAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIW--VKFPVKDG-KG-I--L-DSGTYVVIWTTTPWTIPANRA 252 (961)
T ss_pred HHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEE--EEEEecCc-cc-c--c-CCCCeEEEEeCCchhhhhCeE
Confidence 9999999999999999999999999999999988888755 67777541 11 0 1 124689999999999999999
Q ss_pred EEECCCCceeEEEecC---------CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCc----e
Q 039882 366 AWVLPDGKYGAFEISE---------TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNE----V 432 (1142)
Q Consensus 366 i~V~P~~~Y~~~~~~~---------~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~----~ 432 (1142)
|||||+++|+++++++ +++||+|+++++++..+. ...+++++.+++|++|+|++|.|||++.. .
T Consensus 253 iav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~---~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~ 329 (961)
T PRK13804 253 ISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKA---GVESFERLADVKGEDLEKIVCAHPLDGLDGYEFE 329 (961)
T ss_pred EEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHh---CCCCcEEEEEEEhhhccCCEEECCCCCcccccce
Confidence 9999999999999854 379999999999876542 12457899999999999999999998532 7
Q ss_pred EEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCC-CccccCCcccceeecCCCCCCchhhhhhhhhh
Q 039882 433 IYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGV-KDEWVLPFEVIPIINIPEFGDKSAERVCTDLK 511 (1142)
Q Consensus 433 v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl-~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~ 511 (1142)
+||++++||++++|||+||+|||||++||+++ ++||| +. .. .+++.|+++...
T Consensus 330 ~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~----------~~~~l~~~--------~~--~vd~~G~~~~~~------ 383 (961)
T PRK13804 330 VPVLDGDHVTDDAGTGFVHTAPGHGREDFNVW----------MKYGRTEI--------PV--TVDEDGFYTENA------ 383 (961)
T ss_pred eEEEecCccCCCCCCceEEeCCCCCHHHHHHH----------HHcCCCcc--------cc--cCCCCeEEccCC------
Confidence 99999999999999999999999999999987 57887 53 12 236778865320
Q ss_pred ccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccC
Q 039882 512 IKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTD 589 (1142)
Q Consensus 512 i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~ 589 (1142)
+-+.| ++++.|+|+.+.+|++.|+++|++.|.++..++ |++|+|||||+|||+++++
T Consensus 384 --------------------~~~~g-~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~ 442 (961)
T PRK13804 384 --------------------PGFGG-ARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTP 442 (961)
T ss_pred --------------------Ccccc-ccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccc
Confidence 00122 235569999999999999999999999987654 6889999999999999999
Q ss_pred ccceecCch-----HHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeeh
Q 039882 590 QWYITYGEE-----EWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAY 664 (1142)
Q Consensus 590 QWFi~~~~~-----~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~ 664 (1142)
||||+|+++ +||+++++++++|+|+|+++++++.+||+|++||||||||+||||||+ |++++ ...++..
T Consensus 443 QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~---~~~~~---~~~~~~~ 516 (961)
T PRK13804 443 QWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPI---FVAED---GEILMDE 516 (961)
T ss_pred cccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeE---EEcCC---CCEeccH
Confidence 999999842 499999999999999999999999999999999999999999999995 44432 1222322
Q ss_pred hhhhhhcccCcccCCCCC-----------CC-CCCC--CCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceE
Q 039882 665 YTVAHMLHKGDMYGSTTG-----------SI-EPGQ--MTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLR 730 (1142)
Q Consensus 665 ~ti~~~l~~~~~~g~~~~-----------~~-~~e~--~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~ 730 (1142)
.++.++.......|.+.+ .+ .... ..+||||||||||+++... + .++.+| .||+|+|
T Consensus 517 ~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~------~-~~~~~~--~~PaD~~ 587 (961)
T PRK13804 517 EVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFV------L-EDRPDL--KWPADLY 587 (961)
T ss_pred HHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCcccc------c-cCCccc--CCCceEE
Confidence 333333221001111110 00 0111 1579999999999887531 1 123334 5899999
Q ss_pred EeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCC
Q 039882 731 VSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDD 809 (1142)
Q Consensus 731 ~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D 809 (1142)
++|+||+||||+++++.+.++.+..|+ ++|++|||++ .+|+|||||+||||+|.++|++||||++|||++++ ++++|
T Consensus 588 ~eG~Di~rgWF~s~ll~s~~~~~~~P~-k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~-~~~~D 665 (961)
T PRK13804 588 LEGSDQHRGWFNSSLLESCGTRGRAPY-KAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASV-DYSDD 665 (961)
T ss_pred EEEcccccHHHHHHHHHHHHhcCCCCh-hhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhC-CCCCC
Confidence 999999999999999999998888776 9999999999 59999999999999999999999999999999975 78999
Q ss_pred ccchHHHHHH---HHHHHHHHHHHHHHHHhhhccC----CCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 039882 810 ANFVFDTANT---GILRLTKEIAWMEEVLAVESSL----RTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGF 882 (1142)
Q Consensus 810 ~~fs~~~~~~---~~~kl~n~~~~~~~~~~~~~~~----~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~ 882 (1142)
++|+++.+.. .+++|+|+++|+.+++.....- +.... ..+|+|+++++++++++++++|++|+|++|++. +
T Consensus 666 ~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~-l 743 (961)
T PRK13804 666 QRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADL-PELERYMLHRLNELDGLVREAYDAYDFKRIYKA-L 743 (961)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-H
Confidence 9999997654 6789999999987766542210 11122 468999999999999999999999999999987 6
Q ss_pred HHHH--hhhHHHHHhcCCc-----------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhc-CCCCeEeccCCCCC
Q 039882 883 YDLQ--AARDEYRLSCGAG-----------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILK-KDGFAVKAGWPTYG 948 (1142)
Q Consensus 883 ~~l~--~~~~~Y~~~~~~~-----------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~-~~~sv~~~~wP~~~ 948 (1142)
++|. .++|+|++..+++ ...+.+|+.+++.+++||+|||||+|||||+.|.+ ..+||+++.||..+
T Consensus 744 ~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~ 823 (961)
T PRK13804 744 VNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETP 823 (961)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCc
Confidence 7675 5789999877653 12456899999999999999999999999999853 35699999999977
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecC
Q 039882 949 TP--DLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNE 1005 (1142)
Q Consensus 949 ~~--d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~ 1005 (1142)
+. |+.++..+ +.+..+|+.+++.++.+|+.+.++ .+.++.|+|+++.
T Consensus 824 ~~~~d~~~~~~~----~~~~~~r~~v~~~le~~R~~~~i~------~~~e~~v~l~~~~ 872 (961)
T PRK13804 824 AFWRDDALAEKW----RKFRAVRDVVTGALEEERAAKRIG------SSLEAAPTVYIAD 872 (961)
T ss_pred chhCCHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCC------CCcceeEEEEcCC
Confidence 54 66666543 556778888888887777776443 2467888887653
No 7
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-156 Score=1485.18 Aligned_cols=791 Identities=19% Similarity=0.286 Sum_probs=655.2
Q ss_pred ChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHH
Q 039882 48 SFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKL 127 (1142)
Q Consensus 48 ~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~ 127 (1142)
+|++|++|| +|.||||+++.++|++||++|+++++|++..+.+.+ +++|+|++|||||||.||||||+|++++
T Consensus 3 ~y~~tl~lp---~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~----~~~f~i~~~pPyanG~lHiGHa~~~~~~ 75 (912)
T PRK05743 3 DYKDTLNLP---KTDFPMRANLPKREPEILKRWEENDLYQKIREANKG----KPKFILHDGPPYANGDIHIGHALNKILK 75 (912)
T ss_pred ChHhhcCCC---CCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCC----CCcEEEeCCCCCCCCCccHHHHHHHHHH
Confidence 799999999 999999999999999999999999999976543322 6899999999999999999999999999
Q ss_pred HHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHH
Q 039882 128 EFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSK 207 (1142)
Q Consensus 128 D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1142)
|+++||+||+||+|+|+|||||||||||.+|+|. +|.+ ++.+++++|+++|+
T Consensus 76 Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~------l~~~---------------------~~~~~~~~f~~~c~- 127 (912)
T PRK05743 76 DIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK------LGKK---------------------GKKLSAAEFRKKCR- 127 (912)
T ss_pred HHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH------cCCc---------------------cccCCHHHHHHHHH-
Confidence 9999999999999999999999999999999862 2421 23455666666664
Q ss_pred HHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHH
Q 039882 208 AAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLK 287 (1142)
Q Consensus 208 ~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~ 287 (1142)
+|++.+.+.|++||++||+++||+++|.|+| |.|+++++|+|.+|+
T Consensus 128 --------------------------------~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~--~~~~~~v~~~f~~l~ 173 (912)
T PRK05743 128 --------------------------------EYALEQVDIQREDFKRLGVLGDWDNPYLTMD--FKYEANIIRALGKMA 173 (912)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHhCCcccCCCCcCCCC--HHHHHHHHHHHHHHH
Confidence 4555566789999999999999999999998 999999999999999
Q ss_pred HcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEE
Q 039882 288 SMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAW 367 (1142)
Q Consensus 288 ~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~ 367 (1142)
++||||+|.+||+|||.|+|+|||+||+|++..+++.| |+|++.++ .....+ .+.+++||||||||||||+|||
T Consensus 174 ~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~y--v~f~l~~~--~~~~~~--~~~~l~i~TTrP~Tl~~n~aia 247 (912)
T PRK05743 174 KKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIY--VAFPVVDG--KLAAAF--KDASLVIWTTTPWTLPANQAIA 247 (912)
T ss_pred HCCCEEecceeEecCCCcCCCchhhHhhcccccCceEE--EEEEecCc--chhccc--CCCEEEEEeCCChhhhhCeEEE
Confidence 99999999999999999999999999999999888877 66776541 000001 2468999999999999999999
Q ss_pred ECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCC
Q 039882 368 VLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGT 447 (1142)
Q Consensus 368 V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GT 447 (1142)
|||+++|++++++ +++||+++++++++..+. ...+++++++++|++|+|++|.|||+ ++.+||++++||++++||
T Consensus 248 v~p~~~Y~~~~~~-~~~~i~a~~~~~~~~~~~---~~~~~~~~~~~~G~~l~g~~~~~Pl~-~~~~pvi~~~~V~~~~GT 322 (912)
T PRK05743 248 VHPEFDYVLVEVE-GEKLIVAKDLVESVLERF---GWEDYEVLATFKGKELEGLVAQHPFY-DRDSPVILGDHVTLDAGT 322 (912)
T ss_pred ECCCCeeEEEEcC-CCEEEEeHHhHHHHHHhh---CCcceEEEEEechHhhcCCEEECCCC-CCeeeEeCCCccCCCCCc
Confidence 9999999999985 469999999999876652 23568899999999999999999998 467999999999999999
Q ss_pred CccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHh
Q 039882 448 GIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRL 527 (1142)
Q Consensus 448 GiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~ 527 (1142)
|+||+|||||++||.++ ++|||+. +.+| ++.|+++.
T Consensus 323 G~Vh~aPahg~~Dy~~~----------~~~~L~~--------~~~v--d~~G~~~~------------------------ 358 (912)
T PRK05743 323 GLVHTAPGHGEDDYVVG----------QKYGLEV--------LNPV--DDDGRYTE------------------------ 358 (912)
T ss_pred CeEEeCCCCCHHHHHHH----------HHcCCCc--------cccc--CCCceEec------------------------
Confidence 99999999999999976 6799742 3333 44555321
Q ss_pred hhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHH
Q 039882 528 TYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLAT 605 (1142)
Q Consensus 528 ~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~ 605 (1142)
..|+|+|+.+.+|+++|++.|++.|.++..++ |.+|+|||||+||++++++||||+++++.||++++
T Consensus 359 -----------~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l 427 (912)
T PRK05743 359 -----------EAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQAL 427 (912)
T ss_pred -----------CCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHH
Confidence 14789999999999999999999999987654 67899999999999999999999998767999999
Q ss_pred HHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeeh---hhhhhhcccCcccCCCCC
Q 039882 606 ECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAY---YTVAHMLHKGDMYGSTTG 682 (1142)
Q Consensus 606 ~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~---~ti~~~l~~~~~~g~~~~ 682 (1142)
+++++|+|+|+++++++.+||++++||||||||+||||||+ |+++++. .+.+.. ++++++++. .|.+.+
T Consensus 428 ~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~---~~~~~~g--~~~~~~~~~~~i~~~~~~---~g~~~W 499 (912)
T PRK05743 428 KAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPI---FYHKETG--ELHPTPELIEHVAKLFEK---EGIDAW 499 (912)
T ss_pred HHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEE---EEECCCC--cEeecHHHHHHHHHHHHh---hCCccc
Confidence 99999999999999999999999999999999999999995 4444321 111111 233333332 111100
Q ss_pred ------CCCC---CCC--CccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHH
Q 039882 683 ------SIEP---GQM--TDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAI 751 (1142)
Q Consensus 683 ------~~~~---e~~--~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al 751 (1142)
.+.+ ..+ .+||+|+|||||++|+.. +. .+. ++|||+|+|++|+||+||||+++++.+.++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~------~~-~~~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~ 570 (912)
T PRK05743 500 FELDAKELLPDEADEYEKETDILDVWFDSGSSHAAV------LE-QRP--ELGYPADLYLEGSDQHRGWFQSSLLTSVAT 570 (912)
T ss_pred cccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHH------hc-Ccc--ccCCCceEEEecccccchHHHHHHHHHHHh
Confidence 0111 112 579999999999988642 11 122 368999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHH---HHHHHHHH
Q 039882 752 MSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANT---GILRLTKE 827 (1142)
Q Consensus 752 ~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~---~~~kl~n~ 827 (1142)
++..|| ++|++|||++ .+|+|||||+||||+|.++|++||||++|||+++ +++++|++|+++.+.. .+++|+|+
T Consensus 571 ~g~~P~-k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~ 648 (912)
T PRK05743 571 RGKAPY-KQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNT 648 (912)
T ss_pred cCCCcc-ceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHH
Confidence 888776 9999999999 5999999999999999999999999999999997 5789999999998754 57899999
Q ss_pred HHHHHHHHhhhcc----CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCCc--
Q 039882 828 IAWMEEVLAVESS----LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGAG-- 899 (1142)
Q Consensus 828 ~~~~~~~~~~~~~----~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~~-- 899 (1142)
++|+.+.+..... ++...+ ..+|+|+++++++++++++++|++|+|++|++. +++|. .++|+|++..+++
T Consensus 649 ~rf~~~nl~~~~~~~~~~~~~~l-~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~-l~~f~~~~ls~~Yie~~K~rly 726 (912)
T PRK05743 649 LRFLLGNLNDFDPAKDAVPYEEL-LELDRWALHRLAELQEEILEAYENYDFHKVYQK-LHNFCSVDLSAFYLDIIKDRLY 726 (912)
T ss_pred HHHHHhCccCCCcccccCCchhC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHhhhhhceeeheeccHhhh
Confidence 9998776543211 111122 478999999999999999999999999999987 66665 6889998876653
Q ss_pred ---------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhh-cCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHH
Q 039882 900 ---------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVIL-KKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVL 967 (1142)
Q Consensus 900 ---------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~-~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~ 967 (1142)
...+.+|+.+++.+++||+|||||+|||||+.|. +..+||+++.||+.++. |+.++..+ +.+..
T Consensus 727 ~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~~sv~~~~wP~~~~~~~~~~~~~~~----~~~~~ 802 (912)
T PRK05743 727 TDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVPELADDEELLAKW----EELLE 802 (912)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCCCceEEecCCCCccccCCHHHHHHH----HHHHH
Confidence 1245689999999999999999999999999985 45679999999987754 66666544 56677
Q ss_pred HHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEec
Q 039882 968 MRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVN 1004 (1142)
Q Consensus 968 iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va 1004 (1142)
+|..+.+.++..|+.+.++ .+.++.|+|+++
T Consensus 803 ~r~~v~~~i~~~r~~~~i~------~~~~~~~~~~~~ 833 (912)
T PRK05743 803 VRDEVNKALEEARKEKVIG------SSLEAEVTLYAD 833 (912)
T ss_pred HHHHHHHHHHHhhhccCCC------cccceEEEEEcC
Confidence 7888888887777775332 246788888765
No 8
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.5e-155 Score=1480.67 Aligned_cols=870 Identities=17% Similarity=0.201 Sum_probs=675.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCC
Q 039882 60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGA 139 (1142)
Q Consensus 60 ~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~ 139 (1142)
.+.|+++++++++|++|+++|+++++|++..+.+.+ +++|++++|||||||.||||||+|++++|+++||+||+||
T Consensus 65 ~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~----~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~ 140 (1205)
T PTZ00427 65 FTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKN----KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGF 140 (1205)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCC----CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCC
Confidence 467999999999999999999999999987754322 5789999999999999999999999999999999999999
Q ss_pred ceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHH
Q 039882 140 NVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQW 219 (1142)
Q Consensus 140 ~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 219 (1142)
+|+|+|||||||||||.+|+| ++|+.. .+....+++++|+.+|+
T Consensus 141 ~V~~~~GwD~hGlPiE~~vEk------~lg~~~-----------------k~~i~~~g~~~f~e~c~------------- 184 (1205)
T PTZ00427 141 SVERKFGWDCHGLPIEYEIEK------ENNINK-----------------KEDILKMGIDVYNEKCR------------- 184 (1205)
T ss_pred eeccCCccCCCCcHHHHHHHH------HhCCCc-----------------ccchhhcCHHHHHHHHH-------------
Confidence 999999999999999999986 335420 00111355566666554
Q ss_pred HHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceee
Q 039882 220 EIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYT 299 (1142)
Q Consensus 220 ~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv 299 (1142)
.|+..+...++++|+|||+|+||+++|.|+| |.|.++++|+|.+|+++||||||.|||
T Consensus 185 --------------------~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d--~~~~~~v~~~f~~L~ekGlIYr~~k~V 242 (1205)
T PTZ00427 185 --------------------GIVLKYSNEWVKTVERIGRWIDFKNDYKTMD--KTFMESVWWVFSELYKNNYVYKSFKVM 242 (1205)
T ss_pred --------------------HHHHHHHHHHHHHHHHhCcEEecCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEecceee
Confidence 5556666788999999999999999999998 999999999999999999999999999
Q ss_pred eccCCCCcccccccc--ccCCccccccceeEeeeccCCCCC---------------Cc----ccC---------------
Q 039882 300 IYSPLDDQPCADHDR--ASGEGVQPQDYTLIKMEVLQPFPA---------------KF----GPL--------------- 343 (1142)
Q Consensus 300 ~w~p~~~t~lad~ev--~~~e~~~~~~y~~ikf~~~~~~~~---------------~~----~~l--------------- 343 (1142)
+|||+|+|+||+||+ +|.+..+|+.| |+|++.+..+. .+ +.+
T Consensus 243 ~wcp~c~TaLS~~EV~~~ykd~~dpsi~--v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~ 320 (1205)
T PTZ00427 243 PYSCKCNTPISNFELNLNYKDTPDPSII--ISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNN 320 (1205)
T ss_pred ccCCCCCCchhHHHhhcccccccCceEE--EEeecccccccccccccccccccccccceeeccccccccccccccccccc
Confidence 999999999999999 68888888766 56766542110 00 000
Q ss_pred --CCCceEEEEeecCCCccccCcEEEECCCCceeEEEe-cCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecC
Q 039882 344 --EGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEI-SETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIG 420 (1142)
Q Consensus 344 --~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~-~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G 420 (1142)
...+.+++||||||||||||+||||||+.+|+.++. .+++.||+++.++..+.. .+.-...+++++++++|++|+|
T Consensus 321 ~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~-~~~~~~~~~~v~~~~~G~~L~g 399 (1205)
T PTZ00427 321 VCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMK-ELKWNVEDLKIVNRFKGKELKG 399 (1205)
T ss_pred cccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHH-hhcccccccEEEEEeechhhCC
Confidence 012469999999999999999999999999999986 346899999998876432 1110114689999999999999
Q ss_pred CeEecCCCC--------CceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCccccee
Q 039882 421 LPLKSPLSF--------NEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPI 492 (1142)
Q Consensus 421 ~~~~~Pl~~--------~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~v 492 (1142)
.+|.+|+.. ++.+|||+++||++++||||||+|||||++||.+| ++|||.... ...++.+
T Consensus 400 ~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~----------~k~gL~~~~--~~~~~~~ 467 (1205)
T PTZ00427 400 LRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVC----------KKNGVIDPE--KNIFIDP 467 (1205)
T ss_pred CeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHH----------HHcCCCCcc--ccccccc
Confidence 999988721 35799999999999999999999999999999987 579983110 0001122
Q ss_pred ecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeec--
Q 039882 493 INIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSE-- 570 (1142)
Q Consensus 493 i~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e-- 570 (1142)
+++.|++++ .+|+|+|+.|++|++.|+++|++.|+|+..++
T Consensus 468 --vd~~G~~~~-----------------------------------~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~ 510 (1205)
T PTZ00427 468 --LDANGYFTN-----------------------------------EVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIV 510 (1205)
T ss_pred --cCCCceecC-----------------------------------CCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeee
Confidence 355565432 15789999999999999999999999997654
Q ss_pred cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchh-hhhHHHhhhcCCceeeecccCCCccCC-CCC
Q 039882 571 PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDEN-RHGFEHTLGWLNQWACSRSFGLGTRIP-WDP 648 (1142)
Q Consensus 571 ~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~-r~~~~~~i~~l~DW~ISRqr~WG~PIP-~d~ 648 (1142)
|++|+|||||+|+|+++++||||+++ ++|+++++++++|+|+|+++ +++|.+||++++||||||||+|||||| |++
T Consensus 511 H~yP~cwR~~tpli~~a~~QWFI~~~--~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~ 588 (1205)
T PTZ00427 511 HSYPFCWRSDTPLIYRAIPAWFIRVS--NSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWAD 588 (1205)
T ss_pred ccCCEeCCCCCEEEEEecceeEEeCc--HHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEc
Confidence 68999999999999999999999997 69999999999999999999 589999999999999999999999999 643
Q ss_pred ce-----eeccCCC----cceeeehhhhhhhcccCcccCCCCCC-CCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhh
Q 039882 649 QF-----LVESLSD----STIYMAYYTVAHMLHKGDMYGSTTGS-IEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRM 717 (1142)
Q Consensus 649 ~~-----~iesl~d----~~iy~~~~ti~~~l~~~~~~g~~~~~-~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~ 717 (1142)
.. +++|+++ +.+++..+.-.+.+....+..+ +|. ...-..++||||||||||++|++ .+||.+. .
T Consensus 589 ~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~-~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~---~ 664 (1205)
T PTZ00427 589 EKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNP-KGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFST---E 664 (1205)
T ss_pred CCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCC-ccccccceeecCceEEEEEeCCCChHHHhCCCccc---c
Confidence 21 1233211 1112211111111111001100 110 00112378999999999999986 5888641 2
Q ss_pred HHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhh
Q 039882 718 KQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADAT 796 (1142)
Q Consensus 718 ~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDal 796 (1142)
+++|+++||+|++++|.||+||||+++++.++++++..|| ++|++||||+ .+|+|||||+||||+|.++|++||||++
T Consensus 665 ~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~Pf-K~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaL 743 (1205)
T PTZ00427 665 KEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPF-KNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSL 743 (1205)
T ss_pred hhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCc-ceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHH
Confidence 5679999999999999999999999999999999999888 9999999999 6999999999999999999999999999
Q ss_pred hhhhhccCC-CCCCccchHHHHH----HHHHHHHHHHHHHHHHHhhhc-----cCC--C---CCCCChhhHHHHHHHHHH
Q 039882 797 RFSLADAGD-GVDDANFVFDTAN----TGILRLTKEIAWMEEVLAVES-----SLR--T---GPPSTYADRVFENEINIA 861 (1142)
Q Consensus 797 Rl~la~~~~-~~~D~~fs~~~~~----~~~~kl~n~~~~~~~~~~~~~-----~~~--~---~~~~~~~D~~il~~l~~~ 861 (1142)
||||++++. .++|++|+++.+. .+++++||.++|+...+.... .+. . ......+|+||+++++++
T Consensus 744 R~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~l 823 (1205)
T PTZ00427 744 RLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSL 823 (1205)
T ss_pred HHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHH
Confidence 999998765 4799999988653 567788999998876543211 110 0 011246899999999999
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHH-HhhhHHHHHhcCCc----------cchHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 039882 862 VEMTDQHYKNYMFREALKTGFYDL-QAARDEYRLSCGAG----------GLNRDLVWRFMDVQTRLITPICPHYAEYVWR 930 (1142)
Q Consensus 862 i~~v~~~ye~~~f~~a~~~~~~~l-~~~~~~Y~~~~~~~----------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~ 930 (1142)
++.++++|++|+|+.|++. +++| ..++|||++..+.+ ..+..+|+++|+.+++||||||||+||+||+
T Consensus 824 i~~v~~~me~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq 902 (1205)
T PTZ00427 824 TKSVHTEMKAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQ 902 (1205)
T ss_pred HHHHHHHHHccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 9999999999999999998 4444 46999999876531 1345689999999999999999999999999
Q ss_pred HhhcC-------------------------CCCeEeccCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 039882 931 VILKK-------------------------DGFAVKAGWPTYGT---PDLILKSANKYLQDSIVLMRKLLQKQILGSKKA 982 (1142)
Q Consensus 931 ~L~~~-------------------------~~sv~~~~wP~~~~---~d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~ 982 (1142)
.|.+. .+|||++.||++++ .|+.++..++.+++++..+|+++++...+.|+
T Consensus 903 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r~- 981 (1205)
T PTZ00427 903 QLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASKK- 981 (1205)
T ss_pred HhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-
Confidence 98421 24999999999875 28899999999999999999999886432221
Q ss_pred ccCCCCCcCccCCCcEEEEEecCC-ChhhHHHHHHHHHhhhhccCCCCCCcHHHH-HHhhcccccccchhhHHHhHHhHH
Q 039882 983 NKKGAPVATLTEDKLKGLVYVNEQ-FDGWKAECLRILQSKFDSKSRTFAPDGEIL-EALQNSSVGQASNFKQTQKLCMPF 1060 (1142)
Q Consensus 983 k~~~~~~~~~~~~~~~v~i~va~~-~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~k~~m~f 1060 (1142)
+...++|....+ +.+-..++.+++.+.+|.++..+..+...+ -.++.+....++.+++.++.++..
T Consensus 982 ------------pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~~~~~~~~~~pn~~~lG~~~g~~~~~v~~~ 1049 (1205)
T PTZ00427 982 ------------PLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSNDTSCLDFSAIPNYKTLGVKLGYNLKKVQNK 1049 (1205)
T ss_pred ------------ccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEecCceEEEEEEechhHhChhhhhhHHHHHHH
Confidence 344566654322 223334555667777766543322110100 001223334466677778888877
Q ss_pred HHHh
Q 039882 1061 LRFK 1064 (1142)
Q Consensus 1061 ~~~~ 1064 (1142)
+..+
T Consensus 1050 i~~~ 1053 (1205)
T PTZ00427 1050 IKNM 1053 (1205)
T ss_pred HHcC
Confidence 7754
No 9
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.6e-154 Score=1470.78 Aligned_cols=879 Identities=20% Similarity=0.264 Sum_probs=690.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCc
Q 039882 61 KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGAN 140 (1142)
Q Consensus 61 ~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~ 140 (1142)
+.+++++++.++|++||++|+++++|++..+.+.+ +++|++++|||||||.||||||+|+|++|+++||+||+||+
T Consensus 5 ~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~----~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~ 80 (975)
T PRK06039 5 PEVDSQPDFPALEEEVLKFWKENDIFEKSIENREG----GPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYK 80 (975)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCcccCccccCC----CCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCc
Confidence 35678899999999999999999999987653322 68999999999999999999999999999999999999999
Q ss_pred eeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHH
Q 039882 141 VLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWE 220 (1142)
Q Consensus 141 Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 220 (1142)
|+|+|||||||||||.+|+| ++|++. ....+++++++|+++|
T Consensus 81 v~~~~GwD~~GlPie~~vek------~l~~~~-----------------~~~i~~~g~~~f~~~c--------------- 122 (975)
T PRK06039 81 VERRAGWDTHGLPVELEVEK------ELGISG-----------------KKDIEEYGIEKFNEKC--------------- 122 (975)
T ss_pred ccCcCCcCCCccHHHHHHHH------HhCccc-----------------ccchhhcCHHHHHHHH---------------
Confidence 99999999999999999986 235420 0111234556666655
Q ss_pred HHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeee
Q 039882 221 IMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTI 300 (1142)
Q Consensus 221 i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~ 300 (1142)
++|+..+...|+++|+|||+|+||+|+|.||| |.|.++++|+|.+|+++||||||.+||+
T Consensus 123 ------------------~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d--~~y~~~v~~~F~~l~~kGliyr~~~~v~ 182 (975)
T PRK06039 123 ------------------RESVLRYTDEWEEYTERLGRWVDFDNPYKTLD--NEYMESVWWALKQLYDKGLLYKGYRVVP 182 (975)
T ss_pred ------------------HHHHHHHHHHHHHHHHHhCceeecCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEecceeee
Confidence 45666666788999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCCccccccccc--cCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEE
Q 039882 301 YSPLDDQPCADHDRA--SGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFE 378 (1142)
Q Consensus 301 w~p~~~t~lad~ev~--~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~ 378 (1142)
|||+|+|+||||||+ |.+..+++.| |+|++.+ +.+.+|+||||||||||||+||||||+++|++++
T Consensus 183 wcp~~~T~Ls~~Ev~~~y~~~~~~~~~--v~f~l~~----------~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~ 250 (975)
T PRK06039 183 YCPRCETPLSNHEVAQGYKDVKDPSVY--VKFKLKG----------EENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVE 250 (975)
T ss_pred ecCCCCCCccHHHHhhcccccCCceEE--EEEEecC----------CCCCEEEEEECCccccccceEEEECCCCceEEEe
Confidence 999999999999999 6777778765 6777642 1346999999999999999999999999999999
Q ss_pred ecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCC--C--ceEEEccCCccccCCCCCccccCC
Q 039882 379 ISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSF--N--EVIYALPMLTILTDKGTGIVTSVP 454 (1142)
Q Consensus 379 ~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~--~--~~v~il~~~~V~~~~GTGiV~~~P 454 (1142)
.+ +++||+++.++.++.. .+++++.+++|++|+|++|.|||+. + +.+||++++||++++|||+||+||
T Consensus 251 ~~-~~~yi~a~~~~~~~~~-------~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aP 322 (975)
T PRK06039 251 GG-GEVYILAEALLEKVLK-------EDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAP 322 (975)
T ss_pred cC-CeEEEEhHHHHHHHhh-------cccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCC
Confidence 74 5899999998886532 3678999999999999999999963 2 369999999999999999999999
Q ss_pred CCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccc
Q 039882 455 SDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFT 534 (1142)
Q Consensus 455 ah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~ 534 (1142)
|||++||+++ ++|||+ ++++| ++.|+++.
T Consensus 323 ahg~~D~~~~----------~~~~l~--------~~~~i--d~~G~~~~------------------------------- 351 (975)
T PRK06039 323 AFGEDDFEVG----------KKYGLP--------VVCPV--DDDGRFTE------------------------------- 351 (975)
T ss_pred CCChHHHHHH----------HHcCCC--------cccee--CCCceEcC-------------------------------
Confidence 9999999987 578974 34444 34454321
Q ss_pred cccccccCCCCcchHhhhHHHHHHHHHcCCeeeee--ccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCc
Q 039882 535 EGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMN 612 (1142)
Q Consensus 535 ~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~ 612 (1142)
.+|+|+|+.+++|+++|++.|++.|++++.+ +|++|+|||||+||++++++||||+++ .||+++++++++++
T Consensus 352 ----~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~--~~k~~ll~~~~~i~ 425 (975)
T PRK06039 352 ----EVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVT--KIKDRMLELNQKIN 425 (975)
T ss_pred ----CCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecH--HHHHHHHHhhCCeE
Confidence 2589999999999999999999999998766 478999999999999999999999996 79999999999999
Q ss_pred eeCchhhh-hHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhccc------------CcccC-
Q 039882 613 LYHDENRH-GFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHK------------GDMYG- 678 (1142)
Q Consensus 613 ~~P~~~r~-~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~------------~~~~g- 678 (1142)
|+|+++++ +|.+||++++||||||||+||||||. |+|++. ..++..++++++... ...+.
T Consensus 426 ~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPi---w~~~~~---g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~ 499 (975)
T PRK06039 426 WYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPI---WRCEDC---GRIDVIGSIEELEELFGEDVEPIDLHRPYVDEV 499 (975)
T ss_pred EECcccchhhHHHHHhcCccceeeeccccCCcceE---EEecCC---CeEEEeccHHHHHHHhCCCcchhhhcccccccc
Confidence 99999999 99999999999999999999999993 556542 234444555554321 00000
Q ss_pred -CCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCC
Q 039882 679 -STTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRH 756 (1142)
Q Consensus 679 -~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~ 756 (1142)
..|+.-..-..++||+|||||||++|++ .+||.+. +++|++|||+|++++|+||+||||+++++.++++++..|
T Consensus 500 ~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~----~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~p 575 (975)
T PRK06039 500 TLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFEN----KEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPP 575 (975)
T ss_pred cccCCCCcceEeccccccceeecCCccHHHhCCcccC----hhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCc
Confidence 0010000012257999999999999876 5888652 456899999999999999999999999999999999888
Q ss_pred CCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHH----HHHHHHHHHHHHHHH
Q 039882 757 WPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDT----ANTGILRLTKEIAWM 831 (1142)
Q Consensus 757 ~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~----~~~~~~kl~n~~~~~ 831 (1142)
| ++|++||||+ .+|+|||||+||+|+|.++|++||||++|||+++++..++|++|+++. .+.+++++||+++|+
T Consensus 576 f-k~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~ 654 (975)
T PRK06039 576 Y-KNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFF 654 (975)
T ss_pred c-cEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999 599999999999999999999999999999999998889999999998 345788999999887
Q ss_pred HHHHh--hhccC----CCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH-hhhHHHHHhcCC--c---
Q 039882 832 EEVLA--VESSL----RTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ-AARDEYRLSCGA--G--- 899 (1142)
Q Consensus 832 ~~~~~--~~~~~----~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~-~~~~~Y~~~~~~--~--- 899 (1142)
..... ..... ..+.. ...|+|++++++.+++.++++|++|+|+.|++. +++|. .++|+|++..++ |
T Consensus 655 ~~y~~~~~~~~~~~~~~~~~~-~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~ 732 (975)
T PRK06039 655 VLYANLDGFDYPPAEDEVDSL-NELDRWILSRLNSLVKEVTEALDNYDITKAARA-IRDFVDDLSNWYIRRSRRRFWKEE 732 (975)
T ss_pred HHHhhhccCCccccccccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHhhhhhccCC
Confidence 53321 11000 11122 478999999999999999999999999999987 66665 567999886643 2
Q ss_pred -----cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhc--CCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHH
Q 039882 900 -----GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILK--KDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRK 970 (1142)
Q Consensus 900 -----~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~--~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~ 970 (1142)
..+..+|+.+|+.+++||||||||+||+||+.|.+ ..+|||+++||++++. |+.++..++.+++++..+|+
T Consensus 733 ~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~ 812 (975)
T PRK06039 733 DDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRS 812 (975)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 12346899999999999999999999999999853 4579999999998865 88999999999999999999
Q ss_pred HHHHHhhhhcccccCCCCCcCccCCCcEEEEEecCCChhhHHHHHHHHHhhhhccCCC----C---CCcHHHHHHhhc--
Q 039882 971 LLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRT----F---APDGEILEALQN-- 1041 (1142)
Q Consensus 971 ~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~~~~~w~~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~~-- 1041 (1142)
++++...+.| .+...++|....+..+...++.+++.+..+.++.. + ...+........
T Consensus 813 ~r~~~~i~~~-------------~pl~~~~v~~~~~~~~~~~~~~~~i~~~~nv~~v~~~~~~~~~~~~~~~~~~~~~~~ 879 (975)
T PRK06039 813 ARKKAGIKVR-------------QPLSKITVAEDEEVAEALERYEDLIKDELNVKEVPEEVEIEEEAPEGYAAAEEGGGT 879 (975)
T ss_pred HHHHcCCCCC-------------CccceEEEecCHHHHHHHHHHHHHHHHHhCcccchhheEEEEecCCCceEEeeCCEE
Confidence 9987643211 12345555443222233344555565555443211 0 000000000000
Q ss_pred ---ccccccc--hhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCH--HHHHHHHHHHHHHhcCCceEE
Q 039882 1042 ---SSVGQAS--NFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGE--IEVLQENLDLIKRQLGLEEVE 1105 (1142)
Q Consensus 1042 ---~~~~~~~--~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE--~~vL~~~~~yi~~~l~~~~v~ 1105 (1142)
+.. ..+ .....+.++...+|.++++..-.-.+...+...-+| .++++...+||++++-..++.
T Consensus 880 v~ld~~-~~~~l~~eg~~re~~~~iq~~rk~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 949 (975)
T PRK06039 880 VALDTE-LTEELEAEGLARELIRRIQEMRKEAGLDVSDRIRVYISAPEEVAEAVEKHEDYIKEETLATSLE 949 (975)
T ss_pred EEEECC-cCHHHHHhhHHHHHHHHHHHHHHhCCCCCCceEEEEEeCcHHHHHHHHHHHHHHHHhhCcceee
Confidence 000 011 124556778888888877531100222222222223 478999999999998755444
No 10
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.7e-153 Score=1465.35 Aligned_cols=850 Identities=17% Similarity=0.238 Sum_probs=670.4
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
..++++++|++|+++|+++++|++..+.+.+ +|+|++++||||+||.||||||+|++++|+++||+||+||+|+|+
T Consensus 6 ~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~----~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~ 81 (1159)
T PLN02882 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEG----LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRR 81 (1159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccCC----CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCccccc
Confidence 5679999999999999999999987654432 688999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
|||||||||||.+|+| ++|+.+ ......+++++|+++|+
T Consensus 82 ~GwD~hGlPiE~~vek------~lgi~~-----------------~~~i~~~g~~~f~~~c~------------------ 120 (1159)
T PLN02882 82 FGWDCHGLPVEYEIDK------KLGIKR-----------------RDDVLKMGIDKYNEECR------------------ 120 (1159)
T ss_pred CccCCCCcHHHHHHHH------HcCCCC-----------------ccchhhcCHHHHHHHHH------------------
Confidence 9999999999999975 346431 00112356666666654
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
.|+.++...++++++|||+|+||+++|.||| |.|.++++|+|.+|+++||||||.+||+|||.
T Consensus 121 ---------------~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d--~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~ 183 (1159)
T PLN02882 121 ---------------SIVTRYSKEWEKTVTRTGRWIDFENDYKTMD--PKFMESVWWVFKQLFEKGLVYKGFKVMPYSTA 183 (1159)
T ss_pred ---------------HHHHHHHHHHHHHHHHcCcEEECCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEecceeEeecCC
Confidence 4555666788999999999999999999998 99999999999999999999999999999999
Q ss_pred CCcccccccc--ccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEec-C
Q 039882 305 DDQPCADHDR--ASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEIS-E 381 (1142)
Q Consensus 305 ~~t~lad~ev--~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~-~ 381 (1142)
|+|+||+||+ +|.+..+|+.| |+|++.++ ..+.+++||||||||||||+||||||+.+|+.++.. +
T Consensus 184 ~~TaLs~~E~~~~Yk~~~~~si~--v~F~l~~~---------~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~ 252 (1159)
T PLN02882 184 CKTPLSNFEAGLNYKDVSDPAVM--VSFPIVGD---------PDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYT 252 (1159)
T ss_pred CCCCcchhhhhhhcccCCCcEEE--EEEEecCC---------CCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCC
Confidence 9999999998 67887888765 67877541 123699999999999999999999999999999874 5
Q ss_pred CcEEEEehHHHHhhhhhccc---------cCCCCCeeeEeEecceecCCeEecCCCC-----CceEEEccCCccccCCCC
Q 039882 382 TDVLIVTERAALNLAYQNFS---------RIPKKPTCLVELTGYDLIGLPLKSPLSF-----NEVIYALPMLTILTDKGT 447 (1142)
Q Consensus 382 ~e~~i~~~~~~~~l~~q~~~---------~~~~~~~~~~~~~G~~L~G~~~~~Pl~~-----~~~v~il~~~~V~~~~GT 447 (1142)
++.||+|+.++..+.-. .. ....+++++++++|++|+|++|.+||.. +..+||++++||++++||
T Consensus 253 ~~~~i~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GT 331 (1159)
T PLN02882 253 GKVYIVAESRLSALPTA-KPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGT 331 (1159)
T ss_pred CeEEEEhHHHHHHHHhh-hhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCc
Confidence 78999999988764311 10 0023589999999999999999877631 247999999999999999
Q ss_pred CccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHh
Q 039882 448 GIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRL 527 (1142)
Q Consensus 448 GiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~ 527 (1142)
||||+|||||++||.+| ++|||... ..+++.+| ++.|+++.
T Consensus 332 GiVh~aPahG~~Dy~v~----------~~~gl~~~---~~~~~~~v--d~~G~~~~------------------------ 372 (1159)
T PLN02882 332 GVVHCAPAFGEDDYRVC----------LANGIIEK---GGNLPVPV--DDDGCFTE------------------------ 372 (1159)
T ss_pred ceeEecCCCChhHHHHH----------HHcCCCcc---ccCccceE--CCCceEcc------------------------
Confidence 99999999999999988 57887310 00122222 55666432
Q ss_pred hhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHH
Q 039882 528 TYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLAT 605 (1142)
Q Consensus 528 ~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~ 605 (1142)
.+|+|+|+.|++|++.|++.|+++|.|++.++ |++|+|||||+|+|+++++||||+++ ++|++++
T Consensus 373 -----------~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~--~~k~~~l 439 (1159)
T PLN02882 373 -----------KVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVE--EIKDRLL 439 (1159)
T ss_pred -----------CCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcH--HHHHHHH
Confidence 15789999999999999999999999997654 67899999999999999999999995 7999999
Q ss_pred HHHhcCceeCchhh-hhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccC------
Q 039882 606 ECLNSMNLYHDENR-HGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYG------ 678 (1142)
Q Consensus 606 ~~l~~v~~~P~~~r-~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g------ 678 (1142)
+++++|+|+|++++ +||.+||++++||||||||+||||||. |+|++.++ .++++ +++++.+.....+
T Consensus 440 ~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPv---w~~~~~~~-~~~~~--s~~el~~~~~~~~~dlh~~ 513 (1159)
T PLN02882 440 ENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPI---WISDDGEE-VVVIG--SIAELEKLSGVKVTDLHRH 513 (1159)
T ss_pred HhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccce---EEeCCCCe-EEecC--cHHHHHHHhCCchhhcccc
Confidence 99999999999995 899999999999999999999999994 66665432 44443 5555433211111
Q ss_pred --------CCCCC-CCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHH
Q 039882 679 --------STTGS-IEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNH 748 (1142)
Q Consensus 679 --------~~~~~-~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~ 748 (1142)
..+|+ -..-...+||||||||||++|++ .+||++. ++.|+.+||+|++++|+||+||||+++++.+
T Consensus 514 ~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~----~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s 589 (1159)
T PLN02882 514 FIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN----KELFEKNFPADFVAEGLDQTRGWFYTLMVLS 589 (1159)
T ss_pred chhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccC----hhHhhccCCceEEEEecchhhhHHHHHHHHH
Confidence 01111 00001257999999999999986 6899753 4568888999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeeEEee-cCccccccCCCcCChHHHHHHcChhhhhhhhhccCCC-CCCccchHHHHH----HHHH
Q 039882 749 TAIMSQRHWPRGFRCNGHIML-NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDG-VDDANFVFDTAN----TGIL 822 (1142)
Q Consensus 749 ~al~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~-~~D~~fs~~~~~----~~~~ 822 (1142)
+++++..|| ++|++|||++. +|+|||||+||+|+|.++|++||||++||||+++... .+|++|+++.+. .+++
T Consensus 590 ~~l~~~~pf-k~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~ 668 (1159)
T PLN02882 590 TALFDKPAF-KNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFL 668 (1159)
T ss_pred HHhcCCCCc-ceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHH
Confidence 999999887 99999999995 8999999999999999999999999999999977432 688999888765 3677
Q ss_pred HHHHHHHHHHHHHhhh-----ccCCCC------CCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH-hhhH
Q 039882 823 RLTKEIAWMEEVLAVE-----SSLRTG------PPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ-AARD 890 (1142)
Q Consensus 823 kl~n~~~~~~~~~~~~-----~~~~~~------~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~-~~~~ 890 (1142)
++||.++|+...+... +.+.+. .....+|+||+++++++++.++++|++|+|++|++. +++|. .++|
T Consensus 669 kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~-I~~Fv~~lsN 747 (1159)
T PLN02882 669 PWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPY-LVKFIDNLTN 747 (1159)
T ss_pred HHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHhH
Confidence 8999998887665431 111111 112478999999999999999999999999999998 55565 4899
Q ss_pred HHHHhcCCcc----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhc----CCCCeEeccCCCCCCC--CHHH
Q 039882 891 EYRLSCGAGG----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILK----KDGFAVKAGWPTYGTP--DLIL 954 (1142)
Q Consensus 891 ~Y~~~~~~~~----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~----~~~sv~~~~wP~~~~~--d~~l 954 (1142)
+|++..++|. .+..+|+++|+.+++||+|||||+||+||+.|.+ ..+|||++.||++++. |+.+
T Consensus 748 ~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~l 827 (1159)
T PLN02882 748 IYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERI 827 (1159)
T ss_pred HHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcchhH
Confidence 9999887641 2345899999999999999999999999999843 2579999999998764 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEe-cCCCh-hhHHHHHHHHHhhhhccCCCCCCc
Q 039882 955 KSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYV-NEQFD-GWKAECLRILQSKFDSKSRTFAPD 1032 (1142)
Q Consensus 955 ~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~v-a~~~~-~w~~~~~~~l~~~~~~~~~~~~~~ 1032 (1142)
+..++.+++++..+|+++.+... +.+ .+...+++.. ..++- +...++.+++.+.+|.++..+..+
T Consensus 828 e~~~~~~~~ii~~~r~~r~~~~~-------~~~------~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~ 894 (1159)
T PLN02882 828 EQSVSRMQTVIELARNIRERHNK-------PLK------TPLKEMVVVHPDAEFLDDITGKLKEYVLEELNVRSLVPCND 894 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-------CCC------CccceeeEecCCHHHHHHHHHHHHHHHHHhhCcceEEEeec
Confidence 99999999999999999885422 222 1222333322 22111 112345566666666544332211
Q ss_pred -HHHH-HHhhcccccccchhhHHHhHHhHHHHHhH
Q 039882 1033 -GEIL-EALQNSSVGQASNFKQTQKLCMPFLRFKK 1065 (1142)
Q Consensus 1033 -~~~~-~~~~~~~~~~~~~~k~~~k~~m~f~~~~~ 1065 (1142)
...+ -.++.+....++.+++.++.+++.++.+.
T Consensus 895 ~~~~~~~~~~pn~~~lG~~~~~~~~~v~~~i~~~~ 929 (1159)
T PLN02882 895 PLKYASLRAEPNFSVLGKRLGKSMGLVAKEVKAMS 929 (1159)
T ss_pred ccceEEEEEeeCchHhchhhhhhHHHHHHHHHhCC
Confidence 0000 00122333446677788888888887643
No 11
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.2e-152 Score=1448.64 Aligned_cols=783 Identities=21% Similarity=0.288 Sum_probs=641.1
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
||++|+++|++||++|+++++|++..+.+. +++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+
T Consensus 1 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~-----~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~ 75 (974)
T PLN02843 1 MRANSVTREPEIQKLWEENQVYKRVSDRNN-----GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYV 75 (974)
T ss_pred CCCChHHhhHHHHHHHHHCCCccccccccC-----CCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccC
Confidence 789999999999999999999998765332 467999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
|||||||||||.+++|. +|. +.++.+++++|+++|++.+.+
T Consensus 76 pG~D~hGlpie~~vek~------l~~--------------------~~~~~~~~~~f~~~c~~~~~~------------- 116 (974)
T PLN02843 76 PGWDCHGLPIELKVLQS------LDQ--------------------EARKELTPIKLRAKAAKFAKK------------- 116 (974)
T ss_pred CccCCCCcHHHHHHHHH------hch--------------------hhhccCCHHHHHHHHHHHHHH-------------
Confidence 99999999999998762 121 022346678888887765544
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
+...|+++|+|||+++||+++|.||| |.|+++++|+|.+|+++||||||.|||+|||+
T Consensus 117 --------------------~~~~~~~~~~~lG~~~Dw~~~y~T~d--~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~ 174 (974)
T PLN02843 117 --------------------TVDTQRESFKRYGVWGDWENPYLTLD--PEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPS 174 (974)
T ss_pred --------------------HHHHHHHHHHHhCCceecCCCCccCC--HHHHHHHHHHHHHHHHCCCEEecceeeeecCC
Confidence 33568899999999999999999998 99999999999999999999999999999999
Q ss_pred CCccccccccccCCc-cccccceeEeeeccCCCCCCcccCCC--CceEEEEeecCCCccccCcEEEECCCCceeEEEec-
Q 039882 305 DDQPCADHDRASGEG-VQPQDYTLIKMEVLQPFPAKFGPLEG--KKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEIS- 380 (1142)
Q Consensus 305 ~~t~lad~ev~~~e~-~~~~~y~~ikf~~~~~~~~~~~~l~~--~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~- 380 (1142)
|+|+|||||++|++. ++++.|+ +|++.++.+.....+.+ .+.+++||||||||||||+||||||+.+|++|+++
T Consensus 175 ~~Talae~Evey~e~~~~~s~yv--~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~ 252 (974)
T PLN02843 175 SRTALAEAELEYPEGHVSKSIYV--AFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQS 252 (974)
T ss_pred CCCcchHhHhcccCCccCceEEE--EEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEecc
Confidence 999999999999985 6888775 55554311110000111 13699999999999999999999999999999985
Q ss_pred -----------------------CCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEc-
Q 039882 381 -----------------------ETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYAL- 436 (1142)
Q Consensus 381 -----------------------~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il- 436 (1142)
+++.||+++.++..+.-. + ..+++++++++|++|+|++|.|||++ +.+||+
T Consensus 253 ~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~-~---~~~~~~~~~~~g~~L~g~~~~~P~~~-~~~pii~ 327 (974)
T PLN02843 253 FSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAK-W---GVKLVVLKTFPGSDLEGCRYIHPLYN-RESPVVI 327 (974)
T ss_pred ccccccccccccccccccccccccCceEEeHHHHHHHHHHh-h---CCceEEEeeechHHcCCCEEECCCCC-CceeEEe
Confidence 246899999888865221 1 12589999999999999999999975 578885
Q ss_pred cCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchh
Q 039882 437 PMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQN 516 (1142)
Q Consensus 437 ~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~ 516 (1142)
+++||++++|||+||+|||||++||+++ ++|||+ ++.+ ++++|++++
T Consensus 328 ~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~----------~~~~l~--------~~~~--vd~~G~~~~------------- 374 (974)
T PLN02843 328 GGDYITTESGTGLVHTAPGHGQEDYITG----------LKYGLP--------LLSP--VDDAGKFTE------------- 374 (974)
T ss_pred cCCccCCCCCCCeEEeCCCCCHHHHHHH----------HHcCCC--------cccc--cCCCceEcc-------------
Confidence 6899999999999999999999999987 578974 2222 366676532
Q ss_pred hHHHHHHHHHhhhccccccccccccCCCCcchH-hhhHHHHHHHHHcCCeeeee--ccCccccccCCCeEEEcccCccce
Q 039882 517 EKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQ-DAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDECVVALTDQWYI 593 (1142)
Q Consensus 517 d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~-ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~~i~~~~~QWFi 593 (1142)
.+|+|+|+.|. +||+.|+++|++.|.++... .|.+|||||||+|||+|+++||||
T Consensus 375 ----------------------~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi 432 (974)
T PLN02843 375 ----------------------EAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFA 432 (974)
T ss_pred ----------------------CCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeE
Confidence 15789999997 89999999999999988654 378899999999999999999999
Q ss_pred ecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhccc
Q 039882 594 TYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHK 673 (1142)
Q Consensus 594 ~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~ 673 (1142)
+++ +||+++++++++|+|+|++++++|.+||+|++||||||||+||||||. |++... .+++|++++++|+.+.
T Consensus 433 ~~~--~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~---~~~~~~--~~~~~~~~~i~~~~~~ 505 (974)
T PLN02843 433 SVE--GFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPV---FYHVET--KEPLMNEETIAHVKSI 505 (974)
T ss_pred eCH--HHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEE---EEEcCC--CCEeechhhHHHHHHH
Confidence 995 799999999999999999999999999999999999999999999993 455433 4678898998887542
Q ss_pred CcccCCCCC------CCCCC-------CC--CccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccch
Q 039882 674 GDMYGSTTG------SIEPG-------QM--TDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQ 738 (1142)
Q Consensus 674 ~~~~g~~~~------~~~~e-------~~--~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir 738 (1142)
....|.+.+ .+.|+ .+ ..||+|||||||+++.. ++ .++ ++++||+|+|++|+||+|
T Consensus 506 ~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~------~~-~~~--~~~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 506 VAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAG------VL-GSR--EGLSYPADLYLEGSDQHR 576 (974)
T ss_pred HHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHH------Hh-ccc--cccCCCceeeeeeccccc
Confidence 112232211 01111 12 47999999999987632 11 122 245799999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHH---------HcChhhhhhhhhccCCCCC
Q 039882 739 NHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE---------EFSADATRFSLADAGDGVD 808 (1142)
Q Consensus 739 ~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~---------~yGaDalRl~la~~~~~~~ 808 (1142)
|||+++++.+.++.+..|| ++|++|||++ .+|+|||||+||||+|.++|+ +||||++|||++++ ++.+
T Consensus 577 gWf~s~l~~~~~~~g~~Pf-k~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~-~~~~ 654 (974)
T PLN02843 577 GWFQSSLLTSVATKGKAPY-KSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASV-DYTG 654 (974)
T ss_pred hHHHHHHHHHHHhcCCCcc-ceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhc-ccCC
Confidence 9999999999999887777 9999999999 599999999999999999999 79999999999976 6889
Q ss_pred CccchHHHHH---HHHHHHHHHHHHHHHHHhhhcc---CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 039882 809 DANFVFDTAN---TGILRLTKEIAWMEEVLAVESS---LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGF 882 (1142)
Q Consensus 809 D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~---~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~ 882 (1142)
|++|+.+.++ ..+++|+|.++|+.+++..... ++..++ ..+|+|+++++++++++++++|++|+|++|++. +
T Consensus 655 d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~-~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~-i 732 (974)
T PLN02843 655 DVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDL-PSIDKYALFQLENVVNEIEESYDNYQFFKIFQI-L 732 (974)
T ss_pred CceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-H
Confidence 9999998776 5678999999998877654321 111222 468999999999999999999999999999998 5
Q ss_pred HHH--HhhhHHHHHhcCCcc-----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC-----CCCeEeccC
Q 039882 883 YDL--QAARDEYRLSCGAGG-----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK-----DGFAVKAGW 944 (1142)
Q Consensus 883 ~~l--~~~~~~Y~~~~~~~~-----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~-----~~sv~~~~w 944 (1142)
++| ..++|+|++..++|. .++.+|+.+++.+++||+|||||+|||||+.|... .+|||++.|
T Consensus 733 ~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~ 812 (974)
T PLN02843 733 QRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGW 812 (974)
T ss_pred HHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCC
Confidence 545 679999999887741 24568999999999999999999999999998531 469999999
Q ss_pred CCCCCC--C--HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecC
Q 039882 945 PTYGTP--D--LILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNE 1005 (1142)
Q Consensus 945 P~~~~~--d--~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~ 1005 (1142)
|+.++. | +.+ ...++.+.++|..+.+.++.+|+.|.++ .+.++.|+|++++
T Consensus 813 P~~~~~~~~~~~~~----~~~~~~~~~~r~~v~~~l~~~r~~~~i~------~~~~~~v~l~~~~ 867 (974)
T PLN02843 813 PTPNEEWLSFPAED----VDFWSLLLEVRDEVNKVLESARNGKLIG------ASLEAKVYLHASD 867 (974)
T ss_pred CCCchhhcCchHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCC------cccceeEEEEeCC
Confidence 987653 3 222 2235778889999989888888876443 2467888887753
No 12
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-150 Score=1355.85 Aligned_cols=718 Identities=25% Similarity=0.344 Sum_probs=616.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCcee
Q 039882 63 FARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVL 142 (1142)
Q Consensus 63 f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl 142 (1142)
+++.|++.++|++|++.|+++++|+...+.. .+.|+|..||||++|.||||||++.|+.|+++||+||+||+|+
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~------~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl 74 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNED------KPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVL 74 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCC------CCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeee
Confidence 3567999999999999999999999876543 1459999999999999999999999999999999999999999
Q ss_pred ecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHH
Q 039882 143 LPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIM 222 (1142)
Q Consensus 143 ~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~ 222 (1142)
|+|||||+|+|+|.+|||... +.|+ .++++++++|.++|
T Consensus 75 ~~pG~DhAGIaTq~~VEk~l~---~~g~---------------------~r~d~gRe~Fl~~~----------------- 113 (877)
T COG0525 75 WPPGTDHAGIATQVVVEKQLA---AEGI---------------------TRHDLGREEFLKKC----------------- 113 (877)
T ss_pred cCCCCCCCCchHHHHHHHHHH---HcCC---------------------CccccCHHHHHHHH-----------------
Confidence 999999999999999997432 1154 35566777777654
Q ss_pred HhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeecc
Q 039882 223 RSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYS 302 (1142)
Q Consensus 223 ~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~ 302 (1142)
++|++.....+++||+|||+|+||+|+|+||| |.|.+.|+..|.+||++||||||+++||||
T Consensus 114 ----------------weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD--~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWc 175 (877)
T COG0525 114 ----------------WEWKEESGGTIREQLRRLGVSVDWSRERFTMD--PGLSRAVQEAFVRLYEKGLIYRGERLVNWC 175 (877)
T ss_pred ----------------HHHHHHHHHHHHHHHHHhCCCcccccccccCC--HHHHHHHHHHHHHHHHCCceeecCCcccCC
Confidence 57888888899999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCC
Q 039882 303 PLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISET 382 (1142)
Q Consensus 303 p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~ 382 (1142)
|+|+|+|||.||++.|..+..+| |++++.+ .+.+|+|||||||||+|+|||+|||+ |
T Consensus 176 P~~~TAiSd~EVe~~e~~g~L~~--i~y~l~~-----------~~~~i~VATTRPEtmlgdtAVaVhP~----------D 232 (877)
T COG0525 176 PKCRTAISDIEVEYKEVEGKLYY--IKYPLAD-----------GDGYLVVATTRPETLLGDTAVAVHPD----------D 232 (877)
T ss_pred CccccchhhhhhccceeeeeEEE--EEEecCC-----------CCceEEEEecCccccccceEEEECCC----------C
Confidence 99999999999999998876555 7887765 24599999999999999999999999 4
Q ss_pred cEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHH
Q 039882 383 DVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYM 462 (1142)
Q Consensus 383 e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~ 462 (1142)
+ +| ++|+|+.+++|+++ +.|||+.+++|++++|||+||+||+|+++||+
T Consensus 233 e------------RY------------------k~LvGk~v~lPl~~-r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e 281 (877)
T COG0525 233 E------------RY------------------KHLVGKEVILPLVG-REIPIIADEYVDPEFGTGAVKITPAHDFNDYE 281 (877)
T ss_pred h------------hh------------------HhhcCCEEecCCCC-CeeeeecCcccCCcCCCceEEecCCCCchhhh
Confidence 5 66 57899999999984 78999999999999999999999999999998
Q ss_pred HHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccc-c
Q 039882 463 ALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLV-G 541 (1142)
Q Consensus 463 ~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~-g 541 (1142)
++ ++|+|+ ++.|++ ..|++.. .. |
T Consensus 282 ~~----------krh~Lp--------~i~i~d--~dG~in~-----------------------------------~~~~ 306 (877)
T COG0525 282 VG----------KRHNLP--------LINIID--EDGRINE-----------------------------------EAAG 306 (877)
T ss_pred hh----------hcCCCC--------ceEEEC--CCCeecc-----------------------------------CCcc
Confidence 76 678873 455554 3444321 13 5
Q ss_pred CCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHh--cCceeCch
Q 039882 542 DFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLN--SMNLYHDE 617 (1142)
Q Consensus 542 ~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~--~v~~~P~~ 617 (1142)
+|+||++++||++|+++|++.|++.+..+ ++-++|+|||+|+++.+++|||+++. .+++.++++.+ +++|+|+.
T Consensus 307 ~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~--~la~~~l~~~~~g~i~f~P~~ 384 (877)
T COG0525 307 EFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVL--ELAKKALEAVKDGKIKFVPER 384 (877)
T ss_pred ccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhH--hhHHHHHHHHhcCCceEecHH
Confidence 99999999999999999999999997655 45689999999999999999999995 79999999999 89999999
Q ss_pred hhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCC-CCCCCCCCCccceEE
Q 039882 618 NRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTT-GSIEPGQMTDEVWEF 696 (1142)
Q Consensus 618 ~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~-~~~~~e~~~~dv~D~ 696 (1142)
+++++.+|+++++|||||||++||||||. |+|.. ...+|++.. ....... .+.++ ..+.+ ++||+||
T Consensus 385 ~~~~~~~W~~~i~DWcISRQlwwGh~IPv---Wy~~~--~g~v~v~~~-~~~~~~~---~~~~~~~~~~q---d~DVLDT 452 (877)
T COG0525 385 MEKRYEDWMENIRDWCISRQLWWGHRIPV---WYCKE--CGNVVVAEE-EPEDPAA---AEKCPKEELEQ---DEDVLDT 452 (877)
T ss_pred HHHHHHHHHhhCcCceeeeeeecCcccce---EEecC--CCcEEeCCc-cccchhh---hccCchhcccC---Ccchhhh
Confidence 99999999999999999999999999993 55532 234454421 0000000 00000 01222 5799999
Q ss_pred EeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccc
Q 039882 697 IFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKM 774 (1142)
Q Consensus 697 wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KM 774 (1142)
||+|++||++ +|||.+ ..+|+.+||.|++++|.|||+||..++++.+..+.++.|| +.|++||+|. .+|+||
T Consensus 453 WFSS~LwPfstlgWp~~-----t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PF-k~V~ihGLVrDe~G~KM 526 (877)
T COG0525 453 WFSSSLWPFSTLGWPEE-----TPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPF-KDVYIHGLVRDEQGRKM 526 (877)
T ss_pred hhhcccccccccCCCCc-----chHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCc-cEEEEeeeEEcCCCCCC
Confidence 9999999997 699986 3567888999999999999999999999999999999999 9999999999 899999
Q ss_pred cccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhccCCCC-CCCChh
Q 039882 775 SKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVESSLRTG-PPSTYA 850 (1142)
Q Consensus 775 SKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~~~~~-~~~~~~ 850 (1142)
|||+||||+|.++|++|||||||||+++.+..++|++|+++.+. ++.+||||..+|+..+.......... ...+.+
T Consensus 527 SKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~ 606 (877)
T COG0525 527 SKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLA 606 (877)
T ss_pred cccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchH
Confidence 99999999999999999999999999999889999999999875 68899999999998765332211111 111489
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH--HhhhHHHHHhcCCc--------cchHHHHHHHHHHHHHHhhch
Q 039882 851 DRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL--QAARDEYRLSCGAG--------GLNRDLVWRFMDVQTRLITPI 920 (1142)
Q Consensus 851 D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l--~~~~~~Y~~~~~~~--------~~~~~~l~~~l~~l~~lLaPi 920 (1142)
|+||+++++++++.++++|++|+|..|.+. +|+| ..+||||++..++. ..++.+|+++|+.+++|||||
T Consensus 607 drWIls~l~~~v~~v~~~ld~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPf 685 (877)
T COG0525 607 DRWILSRLNETVKEVTEALDNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPF 685 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999987 7765 68999999998853 145679999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 921 CPHYAEYVWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 921 ~P~~aEeiw~~L~~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
|||+||||||.+.+. +||+.++||.+.+. |+.++..++.+.+++..||+++..+.
T Consensus 686 mPfiTEei~q~l~~~-~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~ 742 (877)
T COG0525 686 MPFITEEIWQKLPGT-ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMN 742 (877)
T ss_pred CccchHHHHHhcCCC-CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998544 79999999998765 88899999999999999999998763
No 13
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=6.4e-150 Score=1431.12 Aligned_cols=782 Identities=20% Similarity=0.287 Sum_probs=642.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCce
Q 039882 62 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANV 141 (1142)
Q Consensus 62 ~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~V 141 (1142)
+|||++++.++|++||++|+++++|+...+.+.+ +++|++++|||||||.||||||+|++++|+++||+||+||+|
T Consensus 1 ~f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~----~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v 76 (861)
T TIGR00392 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKG----KPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNV 76 (861)
T ss_pred CCCCCCChhHhhHHHHHHHHHCCchhhhhhccCC----CCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4899999999999999999999999986643322 689999999999999999999999999999999999999999
Q ss_pred eecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHH
Q 039882 142 LLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEI 221 (1142)
Q Consensus 142 l~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i 221 (1142)
+|||||||||||||.+|+| ++|++. .......++++|+++
T Consensus 77 ~~~~G~D~~Glpie~~~ek------~l~~~~-----------------~~~~~~~~~~~f~~~----------------- 116 (861)
T TIGR00392 77 TRKPGWDTHGLPIEHKVEK------KLGISG-----------------KKEISSLEIEEFREK----------------- 116 (861)
T ss_pred CCCCCcCCCccHHHHHHHH------HhCccc-----------------ccccchhhHHHHHHH-----------------
Confidence 9999999999999999986 235320 000011223444444
Q ss_pred HHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeec
Q 039882 222 MRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIY 301 (1142)
Q Consensus 222 ~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w 301 (1142)
|.+|++++...|++||+|||+++||+|+|.|+| |.|+++++|+|.+|+++||||||.+||+|
T Consensus 117 ----------------c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~--p~y~~~~~~~f~~l~~~gliyr~~~~v~w 178 (861)
T TIGR00392 117 ----------------CREFALKQIEEQREQFQRLGVWGDWENPYKTMD--PSYEESQWWLFKEAHEKGLLYRGLKPVYW 178 (861)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhCceecCCCCcCcCC--HHHHHHHHHHHHHHHHCCCEeecceeeec
Confidence 456666677889999999999999999999999 99999999999999999999999999999
Q ss_pred cCCCCccccccccccCC----ccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEE
Q 039882 302 SPLDDQPCADHDRASGE----GVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAF 377 (1142)
Q Consensus 302 ~p~~~t~lad~ev~~~e----~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~ 377 (1142)
||.|+|+||||||++++ +.+++.| |+|++.++ +... ...+..+|+||||||||||||+||||||+++|+++
T Consensus 179 ~p~~~T~La~~Ev~~~~~~~~~~~~~~~--v~f~~~~~--~~~~-~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~ 253 (861)
T TIGR00392 179 SPRCRTALAEAEVEYKENYKDVKDPSIY--VKFPVKKD--KKTY-LKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALV 253 (861)
T ss_pred CCCcCCcccHHHHhcccccccccCceEE--EEEEecCC--cccc-cccccceEEEEECCcccccCCeeeeeCCCCceEEE
Confidence 99999999999999998 6788776 56666431 0000 00111289999999999999999999999999999
Q ss_pred EecC-CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceE------EE-ccCCccccCCCCCc
Q 039882 378 EISE-TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVI------YA-LPMLTILTDKGTGI 449 (1142)
Q Consensus 378 ~~~~-~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v------~i-l~~~~V~~~~GTGi 449 (1142)
+.++ +++||+++++++++..+. ...++++.+++|.+|+|++|.||+++ ..+ |+ ++++||++++|||+
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~G~~l~g~~~~~P~~~-~~~~~~~~~p~v~~~~~V~~~~GTG~ 328 (861)
T TIGR00392 254 QDNTKVEYFILAKKLVEKLYNKA----GSDYEIIKTFKGSDLEGLEYEHPLYD-FVSQLKEGAPVVIGGDHVTTEDGTGI 328 (861)
T ss_pred EcCCCCcEEEEeHHHHHHHHHhc----CCceEEEeeecchhhCCCEEECCCCc-cccccccCCcEEeCCCCCCCCCCCce
Confidence 9753 479999999998876432 11278899999999999999999975 456 75 67799999999999
Q ss_pred cccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhh
Q 039882 450 VTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTY 529 (1142)
Q Consensus 450 V~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y 529 (1142)
||+|||||++||+++ ++|||+. + ..+++.|++...
T Consensus 329 V~~~Pah~~~D~~~~----------~~~~l~~--------~--~~vd~~g~~~~~------------------------- 363 (861)
T TIGR00392 329 VHTAPGHGEEDYEIG----------KKYGLEV--------L--SPVDEKGVYTEG------------------------- 363 (861)
T ss_pred eEcCCCCCHHHHHHH----------HHcCCCc--------c--cccCCCceECCc-------------------------
Confidence 999999999999976 6799852 1 123566765321
Q ss_pred ccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHH
Q 039882 530 LRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATEC 607 (1142)
Q Consensus 530 ~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~ 607 (1142)
.+++.|.+ .+|+|+.+.+|+++|++.|++.|.+++.++ |.+|||||||+||++++++||||+++ .||++++++
T Consensus 364 -~~~~~g~~--~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~--~~k~~~l~~ 438 (861)
T TIGR00392 364 -VNDFQGRF--VKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTK--DIKDQMLEQ 438 (861)
T ss_pred -Cccccccc--cccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcH--HHHHHHHHH
Confidence 01233432 269999999999999999999999987654 67899999999999999999999995 799999999
Q ss_pred HhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCC------
Q 039882 608 LNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTT------ 681 (1142)
Q Consensus 608 l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~------ 681 (1142)
+++|+|+|+++++++.+||++++||||||||+||||||+ |+|++++++ |++++++|+++.....|.+.
T Consensus 439 ~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~w~~~~~ 512 (861)
T TIGR00392 439 IKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPI---WYCEDTGEP---IVVGSIEELIELIELKGIDAWFEDLH 512 (861)
T ss_pred hCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeE---EEECCCCCC---cCchhHHHHHHHHHHhCCccccccch
Confidence 999999999999999999999999999999999999997 888888765 67788888764110011100
Q ss_pred -----C-CCCC---CCC--CccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHH
Q 039882 682 -----G-SIEP---GQM--TDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHT 749 (1142)
Q Consensus 682 -----~-~~~~---e~~--~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~ 749 (1142)
. .... ..+ .+||+|||||||++|++ .++|.+ .++|++|||+|+|++|+||+||||+++++.+.
T Consensus 513 ~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~-----~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~ 587 (861)
T TIGR00392 513 RDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFE-----NEKFKEVFPADFILEGSDQTRGWFYSSLAIGT 587 (861)
T ss_pred hhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCC-----cchhhccCCceEEEEecchhccHHHHHHHHHH
Confidence 0 0000 122 68999999999998875 466643 23689999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHH----HHHHH
Q 039882 750 AIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANT----GILRL 824 (1142)
Q Consensus 750 al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~----~~~kl 824 (1142)
++++..|+ ++|++||||+ .+|+|||||+||+|+|.++|++||||++|||++++ +..+|++|+++.++. +.+++
T Consensus 588 ~~~~~~P~-k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~l 665 (861)
T TIGR00392 588 ALFGQAPY-KNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKIR 665 (861)
T ss_pred HHcCCCCh-HhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHHH
Confidence 88887665 9999999999 59999999999999999999999999999999999 899999999998754 45667
Q ss_pred HHHHHHHH--HHHhhhcc----CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh--hhHHHHHhc
Q 039882 825 TKEIAWME--EVLAVESS----LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQA--ARDEYRLSC 896 (1142)
Q Consensus 825 ~n~~~~~~--~~~~~~~~----~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~--~~~~Y~~~~ 896 (1142)
+|+++|+. ..+..... ...... ...|+|++++++.++++++++|++|+|+.|++. +++|.. ++|+|++.+
T Consensus 666 ~N~~~~~~~~~~l~~~~~~~~~~~~~~l-~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~-l~~f~~~~l~n~Yi~~~ 743 (861)
T TIGR00392 666 WNTYRFLLTYANLDKFDPLFNSVAVEKF-PEEDRWILSRLNSLVEEVNEALEKYNFHKVLRA-LQDFIVEELSNWYIRII 743 (861)
T ss_pred HHHHHHHHHHhccccCCccccccccccC-CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 88888876 43322110 011122 478999999999999999999999999999988 565643 799999877
Q ss_pred CC--c--------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC--CCCeEeccCCCCCCC--CHHHHHHHHHHH
Q 039882 897 GA--G--------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK--DGFAVKAGWPTYGTP--DLILKSANKYLQ 962 (1142)
Q Consensus 897 ~~--~--------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~--~~sv~~~~wP~~~~~--d~~l~~~~~~~~ 962 (1142)
++ | ..++.+++.+++.+++||+|||||+||+||+.|.+. .+||+.++||.+++. |+.++..++.++
T Consensus 744 k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~ 823 (861)
T TIGR00392 744 RDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFIDEALEANMAIVR 823 (861)
T ss_pred hHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcCHHHHHHHHHHH
Confidence 54 2 123468899999999999999999999999998543 479999999998764 888999999999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 039882 963 DSIVLMRKLLQKQILGSK 980 (1142)
Q Consensus 963 ~~i~~iR~~~~~~~e~~r 980 (1142)
+++..+|+++++.....+
T Consensus 824 ~~i~~ir~ir~~~~~~~~ 841 (861)
T TIGR00392 824 EIVEAFLALRDAANKKLR 841 (861)
T ss_pred HHHHHHHHHHHHhChhhh
Confidence 999999999988754333
No 14
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.5e-143 Score=1368.11 Aligned_cols=753 Identities=22% Similarity=0.324 Sum_probs=617.9
Q ss_pred hccccccCcccccccccccccccChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEE
Q 039882 25 LSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFF 104 (1142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~ 104 (1142)
++..|+.+-|-.+...++++.-.|.++-.. ...++..+++.+ |++||++|+++++|+++++.. +++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~~~~-E~~~~~~W~~~~~f~~~~~~~------~~~f~ 91 (958)
T PLN02943 24 LSACRRRAWAPRRAARRFCAAAASENDVFT-----SPETAKSFDFTS-EERIYNWWESQGYFKPNFDRG------GDPFV 91 (958)
T ss_pred hhchHHHhhCCCcccccccchhcCccchhc-----ccccCCCCChhh-hHHHHHHHHHCCCcccCcccC------CCCEE
Confidence 334455555666666677765555444332 114668899988 999999999999999876532 57899
Q ss_pred EeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCC
Q 039882 105 GNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESP 184 (1142)
Q Consensus 105 i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~ 184 (1142)
|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+++|.. ...|++
T Consensus 92 i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l---~~~~~~------------- 155 (958)
T PLN02943 92 IPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKML---ASEGIK------------- 155 (958)
T ss_pred EecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHH---HHcCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999998732 223432
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccccccccc
Q 039882 185 QPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRR 264 (1142)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r 264 (1142)
++++++++|+++ |++|++++...|++||++||+++||+|
T Consensus 156 --------~~~~~re~f~~~---------------------------------~~~~~~~~~~~~~~~~~~lG~s~Dw~~ 194 (958)
T PLN02943 156 --------RTDLGRDEFTKR---------------------------------VWEWKEKYGGTITNQIKRLGASCDWSR 194 (958)
T ss_pred --------hhhCCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhCcceecCC
Confidence 233444555544 467888888999999999999999999
Q ss_pred ceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCC
Q 039882 265 SFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLE 344 (1142)
Q Consensus 265 ~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~ 344 (1142)
+|+|+| |.|.++++|+|.+|+++||||||.+||+|||.|+|+|||+||+|.+..++. .+|+|++.+
T Consensus 195 ~~~T~d--~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~--~~i~f~l~~---------- 260 (958)
T PLN02943 195 ERFTLD--EQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTL--YYIKYRVAG---------- 260 (958)
T ss_pred CcccCC--HHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccE--EEEEEEEcC----------
Confidence 999999 999999999999999999999999999999999999999999999877654 457887754
Q ss_pred CCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEe
Q 039882 345 GKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLK 424 (1142)
Q Consensus 345 ~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~ 424 (1142)
+.+.+|+|||||||||+||+||||||++ + +| .+|+|+.+.
T Consensus 261 ~~~~~l~vaTTrPeTl~~~~avavnP~d----------~------------ry------------------~~l~g~~~~ 300 (958)
T PLN02943 261 GSEDFLTIATTRPETLFGDVAIAVNPED----------D------------RY------------------SKYIGKMAI 300 (958)
T ss_pred CCCCEEEEEeCChhhhhcceEEEECCCC----------H------------HH------------------HHHcCCEEE
Confidence 1235899999999999999999999993 3 45 246899999
Q ss_pred cCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhh
Q 039882 425 SPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAE 504 (1142)
Q Consensus 425 ~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~ 504 (1142)
||++.++.+||++++||++++|||+||+|||||++||+++ ++|||+ ++.+| ++.|+
T Consensus 301 ~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~----------~~~~L~--------~~~~i--d~~G~---- 356 (958)
T PLN02943 301 VPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLA----------RKLGLP--------ILNVM--NKDGT---- 356 (958)
T ss_pred CCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHH----------HHcCCC--------ceeee--CCCce----
Confidence 9996357899999999999999999999999999999987 578874 34444 44444
Q ss_pred hhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeee--ccCccccccCCCe
Q 039882 505 RVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDE 582 (1142)
Q Consensus 505 ~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~ 582 (1142)
|+ ++.|+.+.+||++|+++|++.|+++... ++..|+|||||+|
T Consensus 357 ---------------------------------~~--~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~ 401 (958)
T PLN02943 357 ---------------------------------LN--EVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 401 (958)
T ss_pred ---------------------------------ee--ccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcE
Confidence 32 2456679999999999999999998663 4678999999999
Q ss_pred EEEcccCccceecCchHHHHHHHHHHh--cCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcc-
Q 039882 583 CVVALTDQWYITYGEEEWKRLATECLN--SMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDST- 659 (1142)
Q Consensus 583 ~i~~~~~QWFi~~~~~~~k~~~~~~l~--~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~- 659 (1142)
+++++++||||+++ .|+++++++++ +|+|+|+++++++.+|++|++||||||||+||||||+ |+|++.+++.
T Consensus 402 Ie~~~~~QWFi~~~--~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~---w~~~~~~~~~~ 476 (958)
T PLN02943 402 IEPLVSKQWFVTME--PLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKDCEED 476 (958)
T ss_pred eEEEeccceeEEHH--HHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCc---eeccccCCCce
Confidence 99999999999996 69999999996 5999999999999999999999999999999999995 6765433332
Q ss_pred eeeehhhhhhhcccCcccCCCCCCCCC-CCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccc
Q 039882 660 IYMAYYTVAHMLHKGDMYGSTTGSIEP-GQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLI 737 (1142)
Q Consensus 660 iy~~~~ti~~~l~~~~~~g~~~~~~~~-e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~i 737 (1142)
+.++. .....+.. .+..||. .+ -..++||+|||||||++|++ .|||.. .+++|++|||+|++++|+||+
T Consensus 477 ~~v~~-~~~~~~~~---~~~~~g~-~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~----~~~~~~~~yP~dl~~~G~Dii 547 (958)
T PLN02943 477 YIVAR-SAEEALEK---AREKYGK-DVEIYQDPDVLDTWFSSALWPFSTLGWPDV----SAEDFKKFYPTTVLETGHDIL 547 (958)
T ss_pred EEecC-cHHHHHHH---hhhhcCC-chheeecCceEEEEEcCccchHHhcCCCcc----ChHHHhccCCCeEEEEeehHH
Confidence 11111 11111110 0111221 10 11268999999999999986 578763 246799999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHH
Q 039882 738 QNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDT 816 (1142)
Q Consensus 738 r~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~ 816 (1142)
+||++++++.+..+.+..|| ++|++||+++ .+|+|||||+||+|+|.++|++||||++|||+++++ +++|++|+++.
T Consensus 548 ~fW~a~m~~~~~~~~~~~Pf-~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~-~~~d~~fs~~~ 625 (958)
T PLN02943 548 FFWVARMVMMGIEFTGTVPF-SYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGT-AGQDLNLSTER 625 (958)
T ss_pred HHHHHHHHHhhhhhcCCCCh-heEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCC-CCCCccccHHH
Confidence 99999999888877776666 9999999998 799999999999999999999999999999999874 58999999997
Q ss_pred HH---HHHHHHHHHHHHHHHHHhhhc-----------cCCCC---CCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 039882 817 AN---TGILRLTKEIAWMEEVLAVES-----------SLRTG---PPSTYADRVFENEINIAVEMTDQHYKNYMFREALK 879 (1142)
Q Consensus 817 ~~---~~~~kl~n~~~~~~~~~~~~~-----------~~~~~---~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~ 879 (1142)
+. .++++|+|+.+|+...+.... .+... ......|+|++++++.++++++++|++|+|+.|++
T Consensus 626 l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~ 705 (958)
T PLN02943 626 LTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGR 705 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence 64 467899999999877553210 01110 01247899999999999999999999999999999
Q ss_pred HHHHHH--HhhhHHHHHhcCCcc----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCC
Q 039882 880 TGFYDL--QAARDEYRLSCGAGG----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTY 947 (1142)
Q Consensus 880 ~~~~~l--~~~~~~Y~~~~~~~~----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~ 947 (1142)
. +|+| ..++|+|++.++++. .++.+++.+++.+++||+|||||+|||||+.|.+..+||+.++||+.
T Consensus 706 ~-i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~~~si~~~~wP~~ 784 (958)
T PLN02943 706 E-IYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYRKEALIVSPWPQT 784 (958)
T ss_pred H-HHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCCCCceeecCCCCC
Confidence 7 7777 589999999887631 24568999999999999999999999999998655569999999997
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 948 GTP-DLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 948 ~~~-d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
... |+.++..++++++++.+||+++.+..
T Consensus 785 ~~~~d~~~~~~~~~v~~ii~~iR~~r~~~~ 814 (958)
T PLN02943 785 SLPKDLKSIKRFENLQSLTRAIRNARAEYS 814 (958)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 654 78888999999999999999997763
No 15
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.8e-143 Score=1370.25 Aligned_cols=720 Identities=25% Similarity=0.341 Sum_probs=614.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 64 ARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 64 ~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
++.+++.++|++||++|+++++|+++.+.. +++|+|++||||+||.||||||+|++++|+++||+||+||+|+|
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~------~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~ 75 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDGNSN------KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLW 75 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcccC------CCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccC
Confidence 567899999999999999999999876532 58899999999999999999999999999999999999999999
Q ss_pred cccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHH
Q 039882 144 PFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMR 223 (1142)
Q Consensus 144 ~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~ 223 (1142)
++||||||||||.+|+|... ..|. ++.++++++|.++
T Consensus 76 ~~G~D~~Glp~e~~vek~~~---~~g~---------------------~~~~~~~e~f~~~------------------- 112 (861)
T TIGR00422 76 LPGTDHAGIATQVKVEKKLG---AEGK---------------------TKHDLGREEFREK------------------- 112 (861)
T ss_pred CCCcCcCCCcHHHHHHHHhc---ccCC---------------------chhhCCHHHHHHH-------------------
Confidence 99999999999999987321 1121 1223444444443
Q ss_pred hcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccC
Q 039882 224 SFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSP 303 (1142)
Q Consensus 224 ~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p 303 (1142)
|++|++++...+++||++||+|+||+|+|+||| |.|.++|+|+|.+|+++||||+|.++|+|||
T Consensus 113 --------------~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp 176 (861)
T TIGR00422 113 --------------IWEWKEESGGTIKNQIKRLGASLDWSRERFTMD--EGLSKAVKEAFVRLYEKGLIYRGEYLVNWDP 176 (861)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCC--HHHHHHHHHHHHHHHHCCCeeecCcccccCC
Confidence 467888899999999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCc
Q 039882 304 LDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETD 383 (1142)
Q Consensus 304 ~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e 383 (1142)
+|+|+|||+||+|.+..+++.| |+|++.+ +.+.+|+|||||||||+||+||||||+ ++
T Consensus 177 ~~~t~lsd~Ev~~~~~~~~~~~--i~f~~~~----------~~~~~l~vaTtrPeTl~~~~av~V~P~----------~~ 234 (861)
T TIGR00422 177 KLNTAISDIEVEYKEVKGKLYY--IRYPLAN----------GSKDYLVVATTRPETMFGDTAVAVHPE----------DE 234 (861)
T ss_pred CCCCcchHhHhhcccccceEEE--EEEEecC----------CCCCEEEEEeCCcchhhhCeEEEECCC----------ch
Confidence 9999999999999988887765 6777654 123699999999999999999999999 23
Q ss_pred EEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHH
Q 039882 384 VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMA 463 (1142)
Q Consensus 384 ~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~ 463 (1142)
+| ++|+|++|.+|++ ++.+|||+++||++++|||+||+|||||++||++
T Consensus 235 ------------ry------------------~~l~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~ 283 (861)
T TIGR00422 235 ------------RY------------------KHLIGKKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEW 283 (861)
T ss_pred ------------HH------------------HHhcCCEEEcCCC-CCcceeeecCCCCcccCCCceEecCCCChHHHHH
Confidence 34 4689999999998 4689999999999999999999999999999998
Q ss_pred HhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCC
Q 039882 464 LHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDF 543 (1142)
Q Consensus 464 ~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~ 543 (1142)
+ ++|||+ ++++|+ ..|+++. .+|.|
T Consensus 284 ~----------~~~~l~--------~~~~id--~~G~~~~-----------------------------------~~~~~ 308 (861)
T TIGR00422 284 G----------KRHNLE--------FINILD--EDGLLNE-----------------------------------NAGKY 308 (861)
T ss_pred H----------HHcCCC--------ccceeC--CCCeEcC-----------------------------------CCccc
Confidence 7 578863 456654 4454331 26899
Q ss_pred CCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHh--cCceeCchhh
Q 039882 544 AGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLN--SMNLYHDENR 619 (1142)
Q Consensus 544 ~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~--~v~~~P~~~r 619 (1142)
+|+++++||++|+++|++.|+++..++ +..|+|||||+||++++++||||+++ .|+++++++++ +++|+|++++
T Consensus 309 ~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~--~~~~~~~~~~~~~~i~~~P~~~~ 386 (861)
T TIGR00422 309 QGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVE--KLADKALEAAEEGEIKFVPKRME 386 (861)
T ss_pred CCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecH--HHHHHHHHHhhcCCeEEEChHHH
Confidence 999999999999999999999987664 57799999999999999999999995 79999999997 6999999999
Q ss_pred hhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEee
Q 039882 620 HGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFC 699 (1142)
Q Consensus 620 ~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFd 699 (1142)
+++.+|+++++||||||||+||||||. |+|++. .++|++.+........ .+|.. ..+. .++||+|||||
T Consensus 387 ~~~~~wl~~l~DW~ISRq~~WG~piP~---w~~~~~--~~~~v~~~~~~~~~~~--~~~~~-~~~~---~~~dVlDtWFd 455 (861)
T TIGR00422 387 KRYLNWLRNIKDWCISRQLIWGHRIPV---WYCKEC--GEVYVAKEEPLPDDKT--NTGPS-VELE---QDTDVLDTWFS 455 (861)
T ss_pred HHHHHHHhccccceeeeecccCCcceE---EEECCC--CcEEeccchHHhhhhh--ccCCc-ccEE---ECCCcccceec
Confidence 999999999999999999999999994 666543 4778865443322211 11110 0111 25799999999
Q ss_pred CCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCcccccc
Q 039882 700 GGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKS 777 (1142)
Q Consensus 700 s~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS 777 (1142)
|+.+|++ .|||.+. ++|++|||+|++++|+||++||+.++++.+.++++..|| ++|++||||+ .+|+|||||
T Consensus 456 S~l~~~s~~g~p~~~-----~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pf-k~v~~hG~v~d~~G~KMSKS 529 (861)
T TIGR00422 456 SSLWPFSTLGWPDET-----KDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPF-KEVYIHGLVRDEQGRKMSKS 529 (861)
T ss_pred cchHHHHHhCCCCCh-----HHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCch-heEEEeeEEECCCCCCCCcC
Confidence 9999886 5888642 578999999999999999999999999999999988777 9999999999 599999999
Q ss_pred CCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhccCCC-CCCCChhhHH
Q 039882 778 TGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVESSLRT-GPPSTYADRV 853 (1142)
Q Consensus 778 ~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~~~~-~~~~~~~D~~ 853 (1142)
+||+|+|.++|++||||++|||+++.++.++|++|+++.+. +++++|||..+|+.........++. .......|+|
T Consensus 530 ~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~w 609 (861)
T TIGR00422 530 LGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRW 609 (861)
T ss_pred CCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHH
Confidence 99999999999999999999999999888999999998765 4688999988887655432211221 1112478999
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCCcc---------chHHHHHHHHHHHHHHhhchhh
Q 039882 854 FENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGAGG---------LNRDLVWRFMDVQTRLITPICP 922 (1142)
Q Consensus 854 il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~~~---------~~~~~l~~~l~~l~~lLaPi~P 922 (1142)
|+++++.++++++++|++|+|+.|++. +|+|. ..+|+|++.+++|. .+..+|+.+++.+++||+||||
T Consensus 610 il~~l~~~~~~v~~~~e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~lL~Pf~P 688 (861)
T TIGR00422 610 ILSKLNRTIKEVRKALDKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHPFMP 688 (861)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999987 77774 89999999877641 3456899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 923 HYAEYVWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 923 ~~aEeiw~~L~~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
|+||+||+.|.+..+||++++||++++. |+.++..++.+++++..+|+++....
T Consensus 689 ~itEelw~~L~~~~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~~~~ 744 (861)
T TIGR00422 689 FITEEIWQHFKEGADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKAESN 744 (861)
T ss_pred HHHHHHHHhCcccCCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998545579999999998864 88999999999999999999997763
No 16
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-143 Score=1368.14 Aligned_cols=713 Identities=23% Similarity=0.324 Sum_probs=610.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCc
Q 039882 61 KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGAN 140 (1142)
Q Consensus 61 ~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~ 140 (1142)
..+++.+++.++|++||++|+++++|+.+.+. +++|+|++||||+||.||||||+|++++|+++||+||+||+
T Consensus 3 ~~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~~-------~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~ 75 (874)
T PRK05729 3 MELPKTYDPKEVEAKWYQKWEEKGYFKPDDNS-------KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYN 75 (874)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCCCcccCcCC-------CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35678899999999999999999999987642 35599999999999999999999999999999999999999
Q ss_pred eeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHH
Q 039882 141 VLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWE 220 (1142)
Q Consensus 141 Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 220 (1142)
|+|+|||||||||+|.++++. +...|++ ++++++++|+++
T Consensus 76 vl~~~G~D~~Gi~~e~~ve~~---l~~~g~~---------------------~~~~~re~f~~~---------------- 115 (874)
T PRK05729 76 TLWLPGTDHAGIATQMVVERQ---LAAEGKS---------------------RHDLGREKFLEK---------------- 115 (874)
T ss_pred ccCCCCCCccchhhHHHHHHH---HHhcCCC---------------------hHHCCHHHHHHH----------------
Confidence 999999999999999999763 2222432 223444455444
Q ss_pred HHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeee
Q 039882 221 IMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTI 300 (1142)
Q Consensus 221 i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~ 300 (1142)
|++|++++...+++||++||+++||+|+|+||| |.|.++|+|+|.+|+++||||||.+||+
T Consensus 116 -----------------~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~v~ 176 (874)
T PRK05729 116 -----------------VWEWKEESGGTITNQLRRLGASCDWSRERFTMD--EGLSKAVREVFVRLYEKGLIYRGKRLVN 176 (874)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhCcceecCCCcccCC--HHHHHHHHHHHHHHHHCCCEeecCcccc
Confidence 468888999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEec
Q 039882 301 YSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEIS 380 (1142)
Q Consensus 301 w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~ 380 (1142)
|||+|+|+|||+||++.+..++. .+|+|++.+ .+.+|+|||||||||+||+||||||+
T Consensus 177 wcp~~~talsd~EV~~~~~~~~~--~~i~f~~~~-----------~~~~l~vaTtrPeTl~~~~avaV~P~--------- 234 (874)
T PRK05729 177 WDPKLQTALSDLEVEYKEVKGKL--WHIRYPLAD-----------GSDYLVVATTRPETMLGDTAVAVNPE--------- 234 (874)
T ss_pred cCCCCCCcchhhhcccccccceE--EEEEEEecC-----------CCcEEEEEeCCcchhhcCeeEeECCC---------
Confidence 99999999999999998866654 557887754 34699999999999999999999999
Q ss_pred CCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhh
Q 039882 381 ETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDD 460 (1142)
Q Consensus 381 ~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~D 460 (1142)
++ +| ++|+|++++||++ ++.+|||+++||++++|||+||++||||++|
T Consensus 235 -d~------------ry------------------~~l~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D 282 (874)
T PRK05729 235 -DE------------RY------------------KHLIGKTVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDPND 282 (874)
T ss_pred -cc------------HH------------------HHhcCCEEECCCC-CCeeeEecCccCCCCCCCcceEecCCCCHHH
Confidence 23 34 4689999999998 5789999999999999999999999999999
Q ss_pred HHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccc
Q 039882 461 YMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLV 540 (1142)
Q Consensus 461 y~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~ 540 (1142)
|+++ ++|||+ ++++|+ ..|++++ .+
T Consensus 283 ~~~~----------~~~~l~--------~~~~i~--~~G~~~~-----------------------------------~~ 307 (874)
T PRK05729 283 FEVG----------KRHNLP--------MINIMD--EDGTINE-----------------------------------NP 307 (874)
T ss_pred HHHH----------HHcCCC--------cccccC--CCCeEcC-----------------------------------CC
Confidence 9987 578863 455554 3455432 26
Q ss_pred cCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHh--cCceeCc
Q 039882 541 GDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLN--SMNLYHD 616 (1142)
Q Consensus 541 g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~--~v~~~P~ 616 (1142)
|+|+|+.+++||++|++.|++.|++...+. +..|+|||||+||++++++||||+|+ .|+++++++++ +++|+|+
T Consensus 308 ~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~--~~~~~~~~~v~~~~i~~~P~ 385 (874)
T PRK05729 308 GEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMK--PLAKPALEAVENGEIKFVPE 385 (874)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehH--HHHHHHHHHHhcCCcEEECh
Confidence 899999999999999999999999986543 56899999999999999999999996 79999999995 6999999
Q ss_pred hhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEE
Q 039882 617 ENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEF 696 (1142)
Q Consensus 617 ~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~ 696 (1142)
.+++++.+|+++++||||||||+||||||. |++++ +++|++++.... +.. ..++. .+|||||
T Consensus 386 ~~~~~~~~wl~~l~DWcISRq~~WG~pIP~---~~~~~---~~~~v~~~~~~~-------~~~--~~~~~---~~DvlDt 447 (874)
T PRK05729 386 RWEKTYFHWMENIQDWCISRQLWWGHRIPA---WYDED---GEVYVGREEPEA-------REK--ALLTQ---DEDVLDT 447 (874)
T ss_pred HHHHHHHHHHhcCccceeeeecccCCcccE---EEeCC---CcEEeCCccccc-------ccc--cCeEe---CCceecc
Confidence 999999999999999999999999999993 55554 458887553210 000 01222 5799999
Q ss_pred EeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccc
Q 039882 697 IFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKM 774 (1142)
Q Consensus 697 wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KM 774 (1142)
||||+++|++ .|||.+ +.+|++|||+|++++|+||++||+.++++.+..+.+..|| +.|++||||+ .+|+||
T Consensus 448 WfsS~l~~~~~lgwp~~-----~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pf-k~v~~hG~v~d~~G~KM 521 (874)
T PRK05729 448 WFSSALWPFSTLGWPEK-----TEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPF-KDVYIHGLVRDEQGRKM 521 (874)
T ss_pred eecCCccHHHHhCCCCC-----cHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCch-hheEEeeeEECCCCCCc
Confidence 9999999986 588853 4678999999999999999999999999999988877676 9999999999 799999
Q ss_pred cccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCh
Q 039882 775 SKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVES--SLRTGPPSTY 849 (1142)
Q Consensus 775 SKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~--~~~~~~~~~~ 849 (1142)
|||+||||+|.++|++||||++|||+++.++.++|++|+++.+. .+++++||..+|+...+.... ..........
T Consensus 522 SKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~ 601 (874)
T PRK05729 522 SKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSL 601 (874)
T ss_pred ccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCH
Confidence 99999999999999999999999999998889999999999764 578899999888765433211 1111111247
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCCc------cchHHHHHHHHHHHHHHhhchh
Q 039882 850 ADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGAG------GLNRDLVWRFMDVQTRLITPIC 921 (1142)
Q Consensus 850 ~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~~------~~~~~~l~~~l~~l~~lLaPi~ 921 (1142)
.|+|++++++.+++.++++|++|+|+.|++. +|+|. .++|+|++..+++ ..++.+++.+++.+++||+|||
T Consensus 602 ~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~-l~~f~~~~~~~~Yle~~k~~l~~~~~~~~~~~l~~~l~~~~~lL~Pf~ 680 (874)
T PRK05729 602 ADRWILSRLNRTVAEVTEALDKYRFDEAARA-LYEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILRLLHPFM 680 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcccc
Confidence 8999999999999999999999999999987 77775 7999999998876 2356689999999999999999
Q ss_pred hHHHHHHHHHhhcC--CCCeEeccCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 039882 922 PHYAEYVWRVILKK--DGFAVKAGWPTYGTP-DLILKSANKYLQDSIVLMRKLLQKQ 975 (1142)
Q Consensus 922 P~~aEeiw~~L~~~--~~sv~~~~wP~~~~~-d~~l~~~~~~~~~~i~~iR~~~~~~ 975 (1142)
||+|||||+.|.+. .+||+.++||++++. |+.++..++.+++++..||+++...
T Consensus 681 PfitEelw~~l~~~~~~~si~~~~~P~~~~~~~~~~~~~~~~~~~ii~~ir~~r~~~ 737 (874)
T PRK05729 681 PFITEELWQKLAPLGIEESIMLAPWPEADEAIDEAAEAEFEWLKELITAIRNIRAEM 737 (874)
T ss_pred hhhHHHHHHhcccCCCCCceeecCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998533 248999999998765 7888999999999999999998765
No 17
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=4e-143 Score=1369.21 Aligned_cols=736 Identities=21% Similarity=0.282 Sum_probs=601.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCce
Q 039882 62 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANV 141 (1142)
Q Consensus 62 ~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~V 141 (1142)
.++..+++.++|++||++|+++++|++..+.. +++|+|++||||+||.||||||+|+|++|+++||+||+||+|
T Consensus 95 ~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~------~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~v 168 (1066)
T PLN02381 95 QMAKQYSPSAVEKSWYAWWEKSGYFGADAKSS------KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNA 168 (1066)
T ss_pred hcccCCCHHHHHHHHHHHHHHCCCccCCccCC------CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 57789999999999999999999999865332 688999999999999999999999999999999999999999
Q ss_pred eecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHH
Q 039882 142 LLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEI 221 (1142)
Q Consensus 142 l~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i 221 (1142)
+|+|||||||||||.+|+|... .+.|. +++++++++|.++
T Consensus 169 l~~~G~D~~Glp~e~~vek~l~--~~~~~---------------------~~~~~~re~f~~~----------------- 208 (1066)
T PLN02381 169 LWVPGVDHAGIATQVVVEKKLM--RERHL---------------------TRHDIGREEFVSE----------------- 208 (1066)
T ss_pred cccCCCCCCcChHHHHHHHHhH--hhcCC---------------------ChhhCCHHHHHHH-----------------
Confidence 9999999999999999976210 11132 1223344444443
Q ss_pred HHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeec
Q 039882 222 MRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIY 301 (1142)
Q Consensus 222 ~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w 301 (1142)
|++|++++...|++||++||+++||+|+|+||| |.|.++|+|+|.+|+++||||||.+||+|
T Consensus 209 ----------------~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~VnW 270 (1066)
T PLN02381 209 ----------------VWKWKDEYGGTILNQLRRLGASLDWSRECFTMD--EQRSKAVTEAFVRLYKEGLIYRDIRLVNW 270 (1066)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhCchhccCCccccCC--HHHHHHHHHHHHHHHHCCCEEeccccccC
Confidence 567888888999999999999999999999998 99999999999999999999999999999
Q ss_pred cCCCCccccccccccCCccccccceeEeeeccCC------CCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCcee
Q 039882 302 SPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQP------FPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYG 375 (1142)
Q Consensus 302 ~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~------~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~ 375 (1142)
||+|+|+|||+||+|.+..+++.| +|+.... |-...+.+.+.+.+++|||||||||+|++|++|||++
T Consensus 271 cP~~~TaLSd~EVey~d~~~~s~~---~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d--- 344 (1066)
T PLN02381 271 DCTLRTAISDVEVDYIDIKERTLL---KVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDD--- 344 (1066)
T ss_pred CCCCCCCccHHHhhhhccccchhh---cccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCC---
Confidence 999999999999998876655533 2221000 0000011222234799999999999999999999993
Q ss_pred EEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccC-CccccCCCCCccccCC
Q 039882 376 AFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPM-LTILTDKGTGIVTSVP 454 (1142)
Q Consensus 376 ~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~-~~V~~~~GTGiV~~~P 454 (1142)
+ +| ++|+|+.|.|||+ ++.+|||.+ +||++++|||+||+||
T Consensus 345 -------~------------ry------------------~~L~G~~~~~Pl~-~~~ipIi~d~~~Vd~e~GTG~V~i~P 386 (1066)
T PLN02381 345 -------E------------RY------------------KHLHGKFAVHPFN-GRKLPIICDAILVDPNFGTGAVKITP 386 (1066)
T ss_pred -------c------------ch------------------hhhCCCEEECCCC-CCEEEEEECCccccccCCCCcEEecC
Confidence 2 23 5789999999997 468999986 5999999999999999
Q ss_pred CCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccc
Q 039882 455 SDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFT 534 (1142)
Q Consensus 455 ah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~ 534 (1142)
|||++||+++ ++|||+ ++++|+ +.|.+..
T Consensus 387 aHd~~Dy~~~----------~~~~L~--------~i~~id--~~G~~~~------------------------------- 415 (1066)
T PLN02381 387 AHDPNDFEVG----------KRHNLE--------FINIFT--DDGKINS------------------------------- 415 (1066)
T ss_pred CCChHHHHHH----------HHcCCC--------eeeeeC--CCceeCC-------------------------------
Confidence 9999999987 568863 455554 3444321
Q ss_pred cccccc-cCCCCcchHhhhHHHHHHHHHcCCeee--eeccCccccccCCCeEEEcccCccceecCchHHHHHHHHHH---
Q 039882 535 EGTMLV-GDFAGKKVQDAKPLIRSKLIETGEAIM--YSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECL--- 608 (1142)
Q Consensus 535 ~g~~~~-g~~~G~~v~ea~~~I~~~L~~~g~l~~--~~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l--- 608 (1142)
.+ ++|+|+.+++||++|+++|++.|+++. .++|.+|+|||||+|+++++++||||+|+ .+++++++++
T Consensus 416 ----~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~--~l~~~al~av~~~ 489 (1066)
T PLN02381 416 ----NGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCS--SMAKQALDAAIDG 489 (1066)
T ss_pred ----CCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEch--HHHHHHHHHHhhc
Confidence 12 379999999999999999999999984 45678999999999999999999999996 6999999999
Q ss_pred --hcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCc-----ceeeehhhhhhhcccC-cccC-C
Q 039882 609 --NSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDS-----TIYMAYYTVAHMLHKG-DMYG-S 679 (1142)
Q Consensus 609 --~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~-----~iy~~~~ti~~~l~~~-~~~g-~ 679 (1142)
++|+|+|++++++|.+||++++||||||||+||||||. |+|+ ++++ ..++..+.+++-.... .... .
T Consensus 490 ~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPi---w~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 565 (1066)
T PLN02381 490 ENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPA---WYVT-LEDDQLKELGSYNDHWVVARNESDALLEASQK 565 (1066)
T ss_pred cCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccce---EEec-cChhhcccCCcccceEEEccchHhhcchhhcc
Confidence 78999999999999999999999999999999999993 4443 1111 1122212211110000 0000 1
Q ss_pred CCCC-CCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCC
Q 039882 680 TTGS-IEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHW 757 (1142)
Q Consensus 680 ~~~~-~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~ 757 (1142)
.+|. ... ..++||||||||||++|++ .|||.+ .++|++|||+|++++|+||+|||+.++++.+.++++..||
T Consensus 566 ~~~~~~~~-~rd~DVlDtWF~Sg~~p~~~lg~P~~-----~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PF 639 (1066)
T PLN02381 566 FPGKKFEL-SQDPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPF 639 (1066)
T ss_pred cCCCccce-eecCceeeEEEeCCchHHHHhcCCCC-----HHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCch
Confidence 1111 111 1268999999999999986 589875 3578999999999999999999999999999999999999
Q ss_pred CcEEEEeeEEe-ecCccccccCCCcCChHHHHH-------------------------------------HcChhhhhhh
Q 039882 758 PRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-------------------------------------EFSADATRFS 799 (1142)
Q Consensus 758 Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-------------------------------------~yGaDalRl~ 799 (1142)
++|++||||+ .+|+|||||+||||+|.++|+ +||||+||||
T Consensus 640 -k~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~ 718 (1066)
T PLN02381 640 -RKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFA 718 (1066)
T ss_pred -HHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHH
Confidence 9999999999 799999999999999999999 8999999999
Q ss_pred hhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhh-hc---cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 039882 800 LADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAV-ES---SLRTGPPSTYADRVFENEINIAVEMTDQHYKNY 872 (1142)
Q Consensus 800 la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~-~~---~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~ 872 (1142)
+++++..++|++|+.+.+. +++++|||+.+|+...+.. .. .+..... ..+|+||+++|+.++++++++|++|
T Consensus 719 l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~-~~~DrWILskL~~~i~~v~~~~e~y 797 (1066)
T PLN02381 719 LVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETM-PFSCKWILSVLNKAISKTVSSLDAY 797 (1066)
T ss_pred HHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCcccc-CHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888999999988654 5788999999998765431 11 0111122 4789999999999999999999999
Q ss_pred cHHHHHHHHHHHH--HhhhHHHHHhcCCcc------------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhc----
Q 039882 873 MFREALKTGFYDL--QAARDEYRLSCGAGG------------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILK---- 934 (1142)
Q Consensus 873 ~f~~a~~~~~~~l--~~~~~~Y~~~~~~~~------------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~---- 934 (1142)
+|+.|++. +|+| ..+||+|++..+++. .++.+|+.++..+++||+|||||+|||||+.|.+
T Consensus 798 ~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~ 876 (1066)
T PLN02381 798 EFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDH 876 (1066)
T ss_pred CHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccC
Confidence 99999987 6665 789999998877631 2456899999999999999999999999999852
Q ss_pred -CCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 039882 935 -KDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQ 975 (1142)
Q Consensus 935 -~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~ 975 (1142)
..+||++++||.+++. |+.++..++.+++++..+|+++...
T Consensus 877 ~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~ 920 (1066)
T PLN02381 877 TRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEV 920 (1066)
T ss_pred CCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2369999999998764 8899999999999999999999886
No 18
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=5.6e-143 Score=1377.97 Aligned_cols=733 Identities=23% Similarity=0.308 Sum_probs=604.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCccccCCC--CCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcC
Q 039882 61 KSFARRDRLLEIESKVHTWWEESNVFNAEPG--ERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKG 138 (1142)
Q Consensus 61 ~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~--~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G 138 (1142)
..+++.+++.++|++||++|+++++|+.... .+.+ +++|+|++|||||||.||||||+|++++|+++||+||+|
T Consensus 22 ~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~----~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G 97 (995)
T PTZ00419 22 SSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNS----GKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKG 97 (995)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCC----CCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3577889999999999999999999998531 1111 688999999999999999999999999999999999999
Q ss_pred CceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhH
Q 039882 139 ANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQ 218 (1142)
Q Consensus 139 ~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 218 (1142)
|+|+|+|||||||||+|.++|+... .+.|.. +.++++++|+++
T Consensus 98 ~~v~~~~G~D~~Gl~~~~~vE~~l~--~~~~~~---------------------~~~~~~e~f~~~-------------- 140 (995)
T PTZ00419 98 DETLWVPGTDHAGIATQVVVEKKLM--KEENKT---------------------RHDLGREEFLKK-------------- 140 (995)
T ss_pred CcccCCCCCCCCchhhHHHHHHHHH--HhcCCC---------------------hHHcCHHHHHHH--------------
Confidence 9999999999999999999987321 112321 122333333333
Q ss_pred HHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceeccee
Q 039882 219 WEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRY 298 (1142)
Q Consensus 219 ~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~p 298 (1142)
|++|++++...|++||++||+++||+|+|+||| |.|.++++|+|.+|+++||||||.+|
T Consensus 141 -------------------~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d--~~~~~~v~~~F~~l~~~Gliyr~~~~ 199 (995)
T PTZ00419 141 -------------------VWEWKDKHGNNICNQLRRLGSSLDWSREVFTMD--EQRSKAVKEAFVRLYEDGLIYRDTRL 199 (995)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEeccee
Confidence 578899999999999999999999999999999 99999999999999999999999999
Q ss_pred eeccCCCCccccccccccCCccccccc--------------eeEeeeccCCCCCCcccCCCCc-eEEEEeecCCCccccC
Q 039882 299 TIYSPLDDQPCADHDRASGEGVQPQDY--------------TLIKMEVLQPFPAKFGPLEGKK-VYLAAATLRPETMYGQ 363 (1142)
Q Consensus 299 v~w~p~~~t~lad~ev~~~e~~~~~~y--------------~~ikf~~~~~~~~~~~~l~~~~-~~l~i~TtrPeTl~g~ 363 (1142)
|+|||.|+|+|||+||+|.+..+++.+ .+|+|++. +.+ .+|+|||||||||+||
T Consensus 200 V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~-----------~~~~~~l~vaTTrPeTl~g~ 268 (995)
T PTZ00419 200 VNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLE-----------DSGQEEIVVATTRIETMLGD 268 (995)
T ss_pred eecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeec-----------CCCCcEEEEEeCCcchhhhC
Confidence 999999999999999999877655521 12344332 223 3899999999999999
Q ss_pred cEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCC-CCCceEEEccCC-cc
Q 039882 364 TNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPL-SFNEVIYALPML-TI 441 (1142)
Q Consensus 364 ~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl-~~~~~v~il~~~-~V 441 (1142)
+||||||++ + +| ++|+|++|.||+ + ++.+||++++ ||
T Consensus 269 ~avav~P~d----------~------------~y------------------~~l~G~~~~~Pl~~-~~~ipii~~~~~V 307 (995)
T PTZ00419 269 VAVAVHPKD----------E------------RY------------------KKLHGKELIHPFIP-DRKIPIIADDELV 307 (995)
T ss_pred eEEEECCCC----------c------------HH------------------HHhcCCEEECCccC-CCEEEEEeCCccc
Confidence 999999993 3 34 468999999999 6 5789999999 99
Q ss_pred ccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHH
Q 039882 442 LTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKL 521 (1142)
Q Consensus 442 ~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l 521 (1142)
++++|||+||+|||||++||+++ ++|||+ ++.+|+ +.|++..
T Consensus 308 ~~~~GTG~V~~~Pahd~~D~~~~----------~~~~L~--------~~~~i~--~~G~~~~------------------ 349 (995)
T PTZ00419 308 DMEFGTGAVKITPAHDPNDYEIA----------KRHNLP--------FINIFT--LDGKINE------------------ 349 (995)
T ss_pred CCCcCCCCeEeCCCCChHHHHHH----------HHcCCC--------eeeeeC--CCceEcC------------------
Confidence 99999999999999999999987 568863 445553 3444321
Q ss_pred HHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeee--ccCccccccCCCeEEEcccCccceecCchH
Q 039882 522 AEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDECVVALTDQWYITYGEEE 599 (1142)
Q Consensus 522 ~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~ 599 (1142)
..|+|+|+.+.+||++|++.|++.|+++... +|.+|+|||||+||++++++||||+|+ +
T Consensus 350 -----------------~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~--~ 410 (995)
T PTZ00419 350 -----------------NGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCK--D 410 (995)
T ss_pred -----------------CCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecH--H
Confidence 2689999999999999999999999998654 468899999999999999999999996 6
Q ss_pred HHHHHHHHHh--cCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcc------eeeehhhhhhhc
Q 039882 600 WKRLATECLN--SMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDST------IYMAYYTVAHML 671 (1142)
Q Consensus 600 ~k~~~~~~l~--~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~------iy~~~~ti~~~l 671 (1142)
|+++++++++ +++|+|+.+++++.+|++|++||||||||+||||||+ |+|+++++.+ .+.........+
T Consensus 411 ~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (995)
T PTZ00419 411 MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPA---YRVISKGPETDPSDEEPWVVARSEEEAL 487 (995)
T ss_pred HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeE---EEeCCCCccccCCCCceEEEcCCHHHHH
Confidence 9999999997 7999999999999999999999999999999999995 5665543221 111000111111
Q ss_pred cc-CcccCC-CCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHH
Q 039882 672 HK-GDMYGS-TTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNH 748 (1142)
Q Consensus 672 ~~-~~~~g~-~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~ 748 (1142)
.. ...++. .++ ... ..++||||||||||++|++ .|||.+ .++|++|||+|++++|+||+|+|++++++.+
T Consensus 488 ~~~~~~~~~~~~~-~~~-~~~~DVlDtWFdS~l~p~~~~g~p~~-----~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~ 560 (995)
T PTZ00419 488 EKAKKKFGLSEED-FEL-EQDEDVLDTWFSSGLFPFSTLGWPDQ-----TDDLQRFFPTSLLETGSDILFFWVARMVMMS 560 (995)
T ss_pred hhhccccCCcccc-CCe-EECCceEEEEEeCCHHHHHHhCCCCC-----hHHHhhcCCCcEEEechhHHhHHHHHHHHHH
Confidence 10 000110 011 011 1257999999999999875 588864 3568999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHH-------------------------------------H
Q 039882 749 TAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-------------------------------------E 790 (1142)
Q Consensus 749 ~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-------------------------------------~ 790 (1142)
..+.+..|| +.|++||||+ .+|+|||||+||||+|.++|+ +
T Consensus 561 ~~~~~~~Pf-k~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~ 639 (995)
T PTZ00419 561 LHLTDKLPF-KTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPE 639 (995)
T ss_pred HHhcCCCCh-HHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcc
Confidence 999988777 9999999999 599999999999999999999 8
Q ss_pred cChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhcc-CCC-------CCCCChhhHHHHHHHH
Q 039882 791 FSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVESS-LRT-------GPPSTYADRVFENEIN 859 (1142)
Q Consensus 791 yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~-~~~-------~~~~~~~D~~il~~l~ 859 (1142)
||||++|||+++.+..++|++|+.+.+. .+++++||+.+|+...+..... ... ......+|+|++++++
T Consensus 640 yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~ 719 (995)
T PTZ00419 640 CGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLN 719 (995)
T ss_pred cCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHH
Confidence 9999999999999889999999998765 5678999999998765543211 000 1112468999999999
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHH--HhhhHHHHHhcCCcc----------chHHHHHHHHHHHHHHhhchhhHHHHH
Q 039882 860 IAVEMTDQHYKNYMFREALKTGFYDL--QAARDEYRLSCGAGG----------LNRDLVWRFMDVQTRLITPICPHYAEY 927 (1142)
Q Consensus 860 ~~i~~v~~~ye~~~f~~a~~~~~~~l--~~~~~~Y~~~~~~~~----------~~~~~l~~~l~~l~~lLaPi~P~~aEe 927 (1142)
++++.++++|++|+|+.|++. +|+| ..++|+|++.++++. .++.+|+.+|+.+++||+|||||+|||
T Consensus 720 ~~i~~v~~~~e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEE 798 (995)
T PTZ00419 720 VAIKEVTEGFKEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEE 798 (995)
T ss_pred HHHHHHHHHHHccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999988 6764 689999999877642 245689999999999999999999999
Q ss_pred HHHHhhc---CCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 928 VWRVILK---KDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 928 iw~~L~~---~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
||+.|.+ ..+||++++||.+++. |+.++..++.+++++..+|+++....
T Consensus 799 lw~~L~~~~~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~~ 852 (995)
T PTZ00419 799 LYQRLPNYLRKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLG 852 (995)
T ss_pred HHHhhhccCCCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999853 3469999999998754 88899999999999999999998764
No 19
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-140 Score=1348.83 Aligned_cols=723 Identities=21% Similarity=0.274 Sum_probs=600.4
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHc
Q 039882 58 ESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLK 137 (1142)
Q Consensus 58 ~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~ 137 (1142)
...+.++.+|++.++|++||++|+++++|+.+.. +.+ +++|+|++||||+||.|||||++|++++|+++||+||+
T Consensus 10 ~~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~----~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~ 84 (1052)
T PRK14900 10 ENRTELAKGYEHREVEARWYPFWQERGYFHGDEH-DRT----RPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMS 84 (1052)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHHCCCccCCcc-cCC----CCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhc
Confidence 3456788999999999999999999999998632 211 68899999999999999999999999999999999999
Q ss_pred CCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhh
Q 039882 138 GANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMY 217 (1142)
Q Consensus 138 G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 217 (1142)
||+|+|++||||||||||.++++.... ..|. +++++++++|.+.
T Consensus 85 G~~vl~~~G~D~~Glp~e~~ve~~l~~--~~~~---------------------~~~~~~~e~f~~~------------- 128 (1052)
T PRK14900 85 GFNTLWLPGTDHAGIATQMIVEKELKK--TEKK---------------------SRHDLGREAFLER------------- 128 (1052)
T ss_pred CCcccCCCCCCccchHHHHHHHHHhhh--ccCC---------------------ChhhCCHHHHHHH-------------
Confidence 999999999999999999988762110 0121 1223334444433
Q ss_pred HHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecce
Q 039882 218 QWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVR 297 (1142)
Q Consensus 218 ~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~ 297 (1142)
|++|++++...|++||++||+++||+|+|+|+| |.|.++++|+|.+|+++||||+|.+
T Consensus 129 --------------------~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d--~~~~~~v~~~F~~L~~~Gliyr~~~ 186 (1052)
T PRK14900 129 --------------------VWAWKEQYGSRIGEQHKALGASLDWQRERFTMD--EGLSRAVREVFVRLHEEGLIYREKK 186 (1052)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHhchheecCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEeccc
Confidence 568888889999999999999999999999998 9999999999999999999999999
Q ss_pred eeeccCCCCccccccccccCC-ccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeE
Q 039882 298 YTIYSPLDDQPCADHDRASGE-GVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGA 376 (1142)
Q Consensus 298 pv~w~p~~~t~lad~ev~~~e-~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~ 376 (1142)
||+|||.|+|+|||+||+|++ ..+.. .+|+|++.+ .+.+|+||||||||||||+||||||++
T Consensus 187 ~v~wcp~~~T~Lsd~Ev~~~e~~~~~~--~~i~f~l~~-----------~~~~l~vaTTrPeTl~~~~avaV~P~~---- 249 (1052)
T PRK14900 187 LINWCPDCRTALSDLEVEHEEAHQGEL--WSFAYPLAD-----------GSGEIVVATTRPETMLGDTAVAVHPLD---- 249 (1052)
T ss_pred eeccCCCCCCCccHHHhcccCCCCCeE--EEEEEEecC-----------CCcEEEEEECchhhhhcceeEEECCCc----
Confidence 999999999999999999886 33333 357887754 235899999999999999999999993
Q ss_pred EEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccC-CccccCCCCCccccCCC
Q 039882 377 FEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPM-LTILTDKGTGIVTSVPS 455 (1142)
Q Consensus 377 ~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~-~~V~~~~GTGiV~~~Pa 455 (1142)
+ +| ++|+|++|.|||+ ++.+|||.+ .+|++++|||+||+|||
T Consensus 250 ------~------------~y------------------~~L~G~~~~~Pl~-~~~ipIi~d~~~vd~~~GTG~V~~~Pa 292 (1052)
T PRK14900 250 ------P------------RY------------------MALHGKKVRHPIT-GRTFPIVADAILVDPKFGTGAVKVTPA 292 (1052)
T ss_pred ------H------------HH------------------HHhcCCEEECCCC-CCeeEEEecccccCcCCCCCeEEecCC
Confidence 2 34 3689999999997 578999964 48999999999999999
Q ss_pred CChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccc
Q 039882 456 DAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTE 535 (1142)
Q Consensus 456 h~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~ 535 (1142)
||++||+++ ++|||+ ++++|+ ..|++..
T Consensus 293 hd~~D~~~~----------~~~~L~--------~~~~id--~~G~~~~-------------------------------- 320 (1052)
T PRK14900 293 HDFNDFEVG----------KRHGLE--------MITVIG--PDGRMTA-------------------------------- 320 (1052)
T ss_pred CChhHHHHH----------HHcCCC--------ccceEC--CCcEEec--------------------------------
Confidence 999999977 568873 445554 3444321
Q ss_pred ccccccCCCCcchHhhhHHHHHHHHHcCCeeee--eccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhc--C
Q 039882 536 GTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMY--SEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNS--M 611 (1142)
Q Consensus 536 g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~--~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~--v 611 (1142)
..|+|+|+.+++||+.|+++|.+.|++... ++|.+|+|||||+|+++++++||||+++ .|++++++++++ +
T Consensus 321 ---~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~--~~k~~~~~~v~~~~~ 395 (1052)
T PRK14900 321 ---EAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIE--PLARPAIEAVEQGRT 395 (1052)
T ss_pred ---CCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehH--HHHHHHHHHHhcCCc
Confidence 157899999999999999999999999864 4578899999999999999999999996 699999999974 9
Q ss_pred ceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCc
Q 039882 612 NLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTD 691 (1142)
Q Consensus 612 ~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~ 691 (1142)
+|+|+..++++.+||++++||||||||+||||||. |+|++ ..+.++ +... ..+ ..|+... -...+
T Consensus 396 ~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~---w~~~~---~~~~v~-----~~~~--~~~-~~~~~~~-~~~~~ 460 (1052)
T PRK14900 396 RFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPA---WYCPD---GHVTVA-----RETP--EAC-STCGKAE-LRQDE 460 (1052)
T ss_pred EEEChHHHHHHHHHHhcCccceEEeecCCCceeCe---EEcCC---CcEEec-----cccc--ccc-cccCccc-eecCC
Confidence 99999999999999999999999999999999993 44442 122211 1111 111 1122111 11267
Q ss_pred cceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEee-
Q 039882 692 EVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIML- 769 (1142)
Q Consensus 692 dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~- 769 (1142)
|||||||||+++|++ .+||.+ .++|++|||+|+|++|+||++||+.++++.+..+.+..|| +.|++||||+.
T Consensus 461 dVlDvWFdS~l~y~s~~g~p~~-----~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pf-k~V~~hG~v~d~ 534 (1052)
T PRK14900 461 DVLDTWFSSGLWPFSTMGWPEQ-----TDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPF-RTVYLHPMVRDE 534 (1052)
T ss_pred ceEEEEEcCChHHHHHHcCCCc-----hHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCcc-ceeEecccEECC
Confidence 999999999999876 578764 3468999999999999999999999999988888887676 99999999995
Q ss_pred cCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhc--c-CCC
Q 039882 770 NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVES--S-LRT 843 (1142)
Q Consensus 770 ~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~--~-~~~ 843 (1142)
+|+|||||+||||+|.++|++||+|++||||++.++.++|++|+++.++ .++++|||+.+|+...+.... . ...
T Consensus 535 ~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~ 614 (1052)
T PRK14900 535 KGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPA 614 (1052)
T ss_pred CCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccc
Confidence 9999999999999999999999999999999998889999999998764 578899998888765443221 1 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCCcc---------chHHHHHHHHHH
Q 039882 844 GPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGAGG---------LNRDLVWRFMDV 912 (1142)
Q Consensus 844 ~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~~~---------~~~~~l~~~l~~ 912 (1142)
.......|+||+++++.++++++++|++|+|+.|++. +|+|. .++|+|++.++++. .+..+++.+|+.
T Consensus 615 ~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~~~L~~~L~~ 693 (1052)
T PRK14900 615 RLARTPADRWILARLQRAVNETVEALEAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEARRSVQAVLVHCLQT 693 (1052)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHHHHHHHHHHHHHHH
Confidence 1112478999999999999999999999999999988 67664 79999999876531 234588999999
Q ss_pred HHHHhhchhhHHHHHHHHHhhcC------CCCeEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 913 QTRLITPICPHYAEYVWRVILKK------DGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 913 l~~lLaPi~P~~aEeiw~~L~~~------~~sv~~~~wP~~~~~d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
+++||+|||||+||+||+.|.+. .+||++++||.+++.|+.++..++.+++++..||++++...
T Consensus 694 l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~~d~~~e~~~~~v~~ii~~iR~~R~~~~ 763 (1052)
T PRK14900 694 SYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGEADEAAEAAFRPVLGIIDAVRNIRGEMG 763 (1052)
T ss_pred HHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998421 26999999999877788899999999999999999998874
No 20
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-138 Score=1316.14 Aligned_cols=717 Identities=23% Similarity=0.323 Sum_probs=598.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCC
Q 039882 60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGA 139 (1142)
Q Consensus 60 ~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~ 139 (1142)
.+.|++++++.++|++||++|+++++|+.+.+.. +++|+|++|||||||.|||||++|++++|+++||+||+||
T Consensus 3 ~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~------~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~ 76 (800)
T PRK13208 3 MPELPKKYDPEELEEKWQKIWEEEGTYKFDPDER------KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGY 76 (800)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcccccccC------CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999876542 5889999999999999999999999999999999999999
Q ss_pred ceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHH
Q 039882 140 NVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQW 219 (1142)
Q Consensus 140 ~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 219 (1142)
+|+|++||||||||||.+|+| ++|+++ +.+++++|++.
T Consensus 77 ~v~~~~G~D~~Glpie~~~ek------~~g~~~---------------------~~~~~~~f~~~--------------- 114 (800)
T PRK13208 77 NVFFPQGWDDNGLPTERKVEK------YYGIRK---------------------DDISREEFIEL--------------- 114 (800)
T ss_pred cccCCCCcCCCcchHHHHHHH------HhCCCc---------------------ccCCHHHHHHH---------------
Confidence 999999999999999999975 236431 12333444443
Q ss_pred HHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceee
Q 039882 220 EIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYT 299 (1142)
Q Consensus 220 ~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv 299 (1142)
|++|++++...++++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||+|.++|
T Consensus 115 ------------------~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v 174 (800)
T PRK13208 115 ------------------CRELTDEDEKKFRELWRRLGLSVDWSLEYQTIS--PEYRRISQKSFLDLYKKGLIYRAEAPV 174 (800)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhCeeeccCCCcccCC--HHHHHHHHHHHHHHHHCCCeeecCccc
Confidence 457777888899999999999999999999998 999999999999999999999999999
Q ss_pred eccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEe
Q 039882 300 IYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEI 379 (1142)
Q Consensus 300 ~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~ 379 (1142)
+|||.|+|+|||+||++++..++. .+|+|++.+ +.+|+||||||||||||+||||||++
T Consensus 175 ~wcp~~~t~Lsd~ev~~~~~~~~~--~~ikf~~~~------------~~~l~v~TtrPeTl~g~~ai~v~p~~------- 233 (800)
T PRK13208 175 LWCPRCETAIAQAEVEYREREGKL--NYIKFPVED------------GEEIEIATTRPELLPACVAVVVHPDD------- 233 (800)
T ss_pred ccCCCCCCccchhhhccccccceE--EEEEEEecC------------CCEEEEEeCCcchhhhCeEEEECCCc-------
Confidence 999999999999999998877765 557887653 24899999999999999999999993
Q ss_pred cCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChh
Q 039882 380 SETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPD 459 (1142)
Q Consensus 380 ~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~ 459 (1142)
+ +| ++|+|+.+.||++ ++.+||++++||++++|||+||+||+|+++
T Consensus 234 ---~------------~~------------------~~l~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~p~hd~~ 279 (800)
T PRK13208 234 ---E------------RY------------------KHLVGKTAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKT 279 (800)
T ss_pred ---h------------HH------------------HHhcCCEEEcCCC-CCcceEECCCccCCCCCcceEEeCCCCCHH
Confidence 2 34 3689999999998 568999999999999999999999999999
Q ss_pred hHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc
Q 039882 460 DYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML 539 (1142)
Q Consensus 460 Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~ 539 (1142)
||+++ ++|||+ ++++|+ +.|.+.. .
T Consensus 280 D~~~~----------~~~~l~--------~~~~i~--~~G~~~~-----------------------------------~ 304 (800)
T PRK13208 280 DVTWW----------RELNLP--------TRIIID--EDGRMTE-----------------------------------A 304 (800)
T ss_pred HHHHH----------HHcCCC--------cccccC--CCceEec-----------------------------------C
Confidence 99876 678874 455553 4444321 2
Q ss_pred ccCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCch
Q 039882 540 VGDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDE 617 (1142)
Q Consensus 540 ~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~ 617 (1142)
+|+|+|+++.+||++|++.|++.|.++..++ +++|+|||||+||++++++||||+++ +|++++++++++++|+|++
T Consensus 305 ~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~--~~~~~~~~~~~~~~~~P~~ 382 (800)
T PRK13208 305 AGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVL--DLKEELLERGKEINWYPEH 382 (800)
T ss_pred CcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCH--HHHHHHHHhhcCcEEECHH
Confidence 6899999999999999999999999986554 56799999999999999999999985 7999999999999999999
Q ss_pred hhhhHHHhhhcCC-ceeeecccCCCccCCCCCceeeccCCCcceeeehh-h--hhhhcccC-cccCCCCC--CCCCCCCC
Q 039882 618 NRHGFEHTLGWLN-QWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYY-T--VAHMLHKG-DMYGSTTG--SIEPGQMT 690 (1142)
Q Consensus 618 ~r~~~~~~i~~l~-DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~-t--i~~~l~~~-~~~g~~~~--~~~~e~~~ 690 (1142)
+++++.+||++++ ||||||||+||||||+ |.|++++. +.++.. . +....... ...+..|| .++. .
T Consensus 383 ~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~---~~~~~~g~--~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~---~ 454 (800)
T PRK13208 383 MRVRLENWIEGLNWDWCISRQRYFGTPIPV---WYCKDCGH--PILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEG---E 454 (800)
T ss_pred HHHHHHHHHHhcCCCceeeeccccCCcceE---EEeCCCCC--eecCchhhhccCchhhccccccccccCCcCEEe---c
Confidence 9999999999988 9999999999999995 44443321 111100 0 00000000 00111122 1222 4
Q ss_pred ccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-
Q 039882 691 DEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM- 768 (1142)
Q Consensus 691 ~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl- 768 (1142)
+|||||||||+.+|.. .+||.+ +++|++|||+|++++|+||++|||+++++++.++++..|| ++|++|||++
T Consensus 455 ~dvlD~WfdS~~~~~~~~~~~~~-----~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf-~~v~~hg~v~~ 528 (800)
T PRK13208 455 TDVMDTWATSSITPLIVTGWERD-----EDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPW-KNIMISGMVLD 528 (800)
T ss_pred CCEEEEEEeCCchHHHHhCCCCC-----hhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCc-ceEEEeeEEEC
Confidence 7999999999988764 577754 3568999999999999999999999999999999998887 9999999999
Q ss_pred ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhccCCCCC
Q 039882 769 LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVESSLRTGP 845 (1142)
Q Consensus 769 ~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~~~~~~ 845 (1142)
.+|+|||||+||+|+|.++|++||+|++|||++ ++++.+|++|+++.+. .++++++|+.+++..... ........
T Consensus 529 ~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~-~~~~~~~~ 606 (800)
T PRK13208 529 PDGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSA-DPEPDKAE 606 (800)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCccc
Confidence 699999999999999999999999999999999 6689999999999875 467889999887653211 11111111
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCCcc----------chHHHHHHHHHHH
Q 039882 846 PSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGAGG----------LNRDLVWRFMDVQ 913 (1142)
Q Consensus 846 ~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~~~----------~~~~~l~~~l~~l 913 (1142)
.....|+|++++++.++++++++|++|+|+.|++. +++|. ..+|+|++..+++. ....+++.+++.+
T Consensus 607 ~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~-i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l 685 (800)
T PRK13208 607 VLEPLDRWILAKLAKVVEKATEALENYDFAKALEE-IESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTL 685 (800)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 12478999999999999999999999999999988 56565 37999998876531 2345889999999
Q ss_pred HHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 039882 914 TRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQ 975 (1142)
Q Consensus 914 ~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~ 975 (1142)
++||+|||||+|||||+.| + .+||+.+.||+.++. ++.++..++.+.+++..+|+.+.+.
T Consensus 686 ~~LLaPf~P~iaEelw~~L-~-~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~r~~~ 747 (800)
T PRK13208 686 LRLLAPFLPFITEEVWSWL-Y-GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEA 747 (800)
T ss_pred HHHhcccchhhHHHHHHhC-C-CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998 4 569999999998754 7788899999999999999988765
No 21
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-132 Score=1137.63 Aligned_cols=770 Identities=18% Similarity=0.269 Sum_probs=615.3
Q ss_pred ccccChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhh
Q 039882 44 ALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFS 123 (1142)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~ 123 (1142)
...+.|+.|+++| || +++.|...++.++++.|....++....+..+ ++.|.+++ +||.||||||+|
T Consensus 12 ~e~~~ys~T~~lp---Kt--~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q-----~~~f~L~d----anG~lhlghaln 77 (937)
T KOG0433|consen 12 GEPIHYSITSHLP---KT--LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQ-----RVEFELKD----ANGNLHLGHALN 77 (937)
T ss_pred CCcccceeecCCC---CC--ccccccccchHHHHHHhCChHHHHHHHhhcc-----CceEEEec----cCCCccchHHHH
Confidence 4456799999999 65 9999999999999999998888876554432 68899999 999999999999
Q ss_pred hhHHHHHHHHHHHcCCceeecccCCccCchhH-HHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHH
Q 039882 124 FSKLEFAAAYHRLKGANVLLPFGFHCTGMPIK-ASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFK 202 (1142)
Q Consensus 124 ~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe-~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1142)
++++||+.||+.++|++|+|+||||||||||| .+|.+-. . ......++.+.|
T Consensus 78 kILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl------~---------------------~~~~~~s~leiR 130 (937)
T KOG0433|consen 78 KILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSL------T---------------------ESEGSRTPLEIR 130 (937)
T ss_pred HHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhh------h---------------------hccccCCcHHHH
Confidence 99999999999999999999999999999999 5665411 1 011345667777
Q ss_pred HHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHH
Q 039882 203 SKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQ 282 (1142)
Q Consensus 203 ~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~ 282 (1142)
++.++.+.++ .+.|++.|+|||++.||.++|.|+| |.|+.....+
T Consensus 131 ~~Ar~fA~~A---------------------------------Ik~Q~e~F~r~gv~aDW~n~Y~T~~--~~ye~aQL~i 175 (937)
T KOG0433|consen 131 AKARIFADEA---------------------------------IKKQMEAFRRWGVTADWENPYVTKS--PSYEAAQLDI 175 (937)
T ss_pred HHHHHHHHHH---------------------------------HHHHHHHHHHheeeccCCCceeecC--hHHHHHHHHH
Confidence 7766554331 2468899999999999999999998 9999999999
Q ss_pred HHHHHHcCcceecceeeeccCCCCccccccccccCCc-cccccceeEeeeccCCCCCCcccC---CCCceEEEEeecCCC
Q 039882 283 MRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEG-VQPQDYTLIKMEVLQPFPAKFGPL---EGKKVYLAAATLRPE 358 (1142)
Q Consensus 283 F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~-~~~~~y~~ikf~~~~~~~~~~~~l---~~~~~~l~i~TtrPe 358 (1142)
|.+|+++|||||+.+||+|||+++||||++|++|.++ ++++.| ++|++.. .+.. +.+ ....+|++|||||||
T Consensus 176 F~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y--~~F~L~~-~S~~-~~~~~~~~~~iyaLVWTTTPW 251 (937)
T KOG0433|consen 176 FAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAY--FRFKLIN-FSSS-AHSEDSKIPQIYALVWTTTPW 251 (937)
T ss_pred HHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEE--EEEeccC-Cccc-cccCCCccCcEEEEEEeCCCc
Confidence 9999999999999999999999999999999999987 466666 6777765 2221 111 124599999999999
Q ss_pred ccccCcEEEECCCCceeEEEec---CCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEE
Q 039882 359 TMYGQTNAWVLPDGKYGAFEIS---ETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYA 435 (1142)
Q Consensus 359 Tl~g~~ai~V~P~~~Y~~~~~~---~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~i 435 (1142)
|||+|.|||+||++.|++++.+ .+++|+++..+..++... .....+++++++|.+|.|.+|.||+.+....|+
T Consensus 252 TlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~----~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~ 327 (937)
T KOG0433|consen 252 TLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKS----SDRKCKIVGTVKGANLIGRRYKHPLHNELGLPI 327 (937)
T ss_pred cccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhh----cCcceeeeeecchhhccCceecCcCccccCCcc
Confidence 9999999999999999999985 258999999888765321 112567899999999999999999977677999
Q ss_pred ccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccch
Q 039882 436 LPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQ 515 (1142)
Q Consensus 436 l~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~ 515 (1142)
+.++||+++.|||+||+|||||++||.++ .++||+.+ .| +|+.|+++.+
T Consensus 328 l~g~hVT~~~GTGLVHTAP~HG~eDYlv~----------l~~~l~~~-------s~---VD~~G~yT~e----------- 376 (937)
T KOG0433|consen 328 LEGPHVTDTVGTGLVHTAPAHGFEDYLVA----------ISKGLRVE-------SF---VDSRGCYTRE----------- 376 (937)
T ss_pred ccccceecCcccceeecCCCCChHHHHHH----------hhcCCCcc-------cc---cCCCCceecc-----------
Confidence 99999999999999999999999999876 56887532 12 3778886532
Q ss_pred hhHHHHHHHHHhhhcccccccccccc-CCCCcch-HhhhHHHHHHHHHcCCeeee--eccCccccccCCCeEEEcccCcc
Q 039882 516 NEKDKLAEAKRLTYLRGFTEGTMLVG-DFAGKKV-QDAKPLIRSKLIETGEAIMY--SEPEKRVMSRSGDECVVALTDQW 591 (1142)
Q Consensus 516 ~d~~~l~ea~~~~y~~~f~~g~~~~g-~~~G~~v-~ea~~~I~~~L~~~g~l~~~--~e~~~~v~~Rsg~~~i~~~~~QW 591 (1142)
.| .+.|+.| .|..+.|+..|. ..+++. +.|.||+.||++.|+|+|+++||
T Consensus 377 ------------------------a~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQW 430 (937)
T KOG0433|consen 377 ------------------------AGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQW 430 (937)
T ss_pred ------------------------cccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhh
Confidence 33 6888888 478889999998 334433 45899999999999999999999
Q ss_pred ceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhc
Q 039882 592 YITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHML 671 (1142)
Q Consensus 592 Fi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l 671 (1142)
||++. ++|..|.++|++|+|+|....+++..++..|++|||||||.||+|||. ++-.+ +++ ..|.-.++.|+.
T Consensus 431 Fi~~e--~~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~---ly~k~-~~~-~l~ns~~~~h~~ 503 (937)
T KOG0433|consen 431 FIDVE--EIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPA---LYDKN-GGS-YLSNSLIEWHAK 503 (937)
T ss_pred eeeHH--hhhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCccee---EEecC-CCc-eeehHHHHHHHH
Confidence 99995 799999999999999999999999999999999999999999999994 22111 111 223334555554
Q ss_pred ccCcccCCCCC------CCCCC-----------C--CCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEe
Q 039882 672 HKGDMYGSTTG------SIEPG-----------Q--MTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVS 732 (1142)
Q Consensus 672 ~~~~~~g~~~~------~~~~e-----------~--~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~ 732 (1142)
...+..|.+.+ ++-|+ + ...|+||+|||||+++.. ++. +..-.++|+|++
T Consensus 504 ~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~------v~~-----~~~~~~aDv~LE 572 (937)
T KOG0433|consen 504 LTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSA------VLD-----NEREHVADVYLE 572 (937)
T ss_pred HHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCccee------ecC-----CCCCcceeeEEe
Confidence 43223333321 01111 0 146899999999987743 110 122257999999
Q ss_pred ecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH------cChhhhhhhhhccCC
Q 039882 733 GKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE------FSADATRFSLADAGD 805 (1142)
Q Consensus 733 G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~------yGaDalRl~la~~~~ 805 (1142)
|.||+||||+++|++++|..+..|+ +.|++|||++ .+|.|||||+||||+|..+++. ||||+||||+|++ +
T Consensus 573 G~DQ~rGWFQSsLLTsvA~q~kAPY-k~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~-~ 650 (937)
T KOG0433|consen 573 GVDQFRGWFQSSLLTSVAVQNKAPY-KKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGS-E 650 (937)
T ss_pred cchhcchHHHHHHHHHHHHhccCCc-hheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecc-c
Confidence 9999999999999999999999998 9999999999 8999999999999999999998 9999999999966 6
Q ss_pred CCCCccchHHHHHH---HHHHHHHHHHHHHHHHhhhcc----CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 039882 806 GVDDANFVFDTANT---GILRLTKEIAWMEEVLAVESS----LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREAL 878 (1142)
Q Consensus 806 ~~~D~~fs~~~~~~---~~~kl~n~~~~~~~~~~~~~~----~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~ 878 (1142)
...|+..+.+.+++ .+.+++++++|+.+++.+.+. ++..++ ..+|+++|.+|+++++++++.|++|+|++++
T Consensus 651 ~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl-~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv 729 (937)
T KOG0433|consen 651 NTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDL-RYIDQYMLQQLDAIVKRIIELYNDYKFRKVV 729 (937)
T ss_pred ccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhh-hhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 77899999988764 577899999999999877542 333343 4689999999999999999999999999999
Q ss_pred HH----------HHHHHHhhhHHHHHhcCC-----ccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEecc
Q 039882 879 KT----------GFYDLQAARDEYRLSCGA-----GGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAG 943 (1142)
Q Consensus 879 ~~----------~~~~l~~~~~~Y~~~~~~-----~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~ 943 (1142)
+. +|| |+..+| |.||+. +..++++|.+++..+++.++||+||++||+||+|++..+-++...
T Consensus 730 ~~lq~F~~~~lSa~Y-fdivKD--RLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~~~~f~~k 806 (937)
T KOG0433|consen 730 NDLQQFLQRNLSAFY-FDIVKD--RLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLK 806 (937)
T ss_pred HHHHHHHHHHhhHHH-HHHHhh--hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCCCcccccC
Confidence 85 344 444555 355542 246788999999999999999999999999999986555599999
Q ss_pred CCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039882 944 WPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQILGSK 980 (1142)
Q Consensus 944 wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~e~~r 980 (1142)
||..... ++..+... -+..+..+|......++.+.
T Consensus 807 ~~~l~s~~~~~~~~~~~--~~~~vl~~~~~~~~~l~la~ 843 (937)
T KOG0433|consen 807 WEDLHSGLLTPHDQLSK--HMKFVLEVRNELESTLGLAI 843 (937)
T ss_pred ccccchhhcCchhHHHH--HHHHHHHHHHhHHHHHHhhh
Confidence 9998764 33222221 12334455655545444333
No 22
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=3.5e-135 Score=1245.38 Aligned_cols=585 Identities=32% Similarity=0.535 Sum_probs=465.8
Q ss_pred HHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchh
Q 039882 75 KVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPI 154 (1142)
Q Consensus 75 ~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPI 154 (1142)
|||++|+++++|+.....+++ +++|++++||||+||.||||||+|+|++|+++||+||+||+|+|+||||||||||
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~----~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpi 76 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKN----KPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPI 76 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTT----SGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHH
T ss_pred CHhHHHhhCCCcccccccCCC----CCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcch
Confidence 799999999999987433322 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhh
Q 039882 155 KASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISE 234 (1142)
Q Consensus 155 e~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~ 234 (1142)
|.+|+| ++|... .++++.+++++|++.
T Consensus 77 e~~vek------~l~~~~-----------------~~~~~~~~~~~~~~~------------------------------ 103 (601)
T PF00133_consen 77 EAKVEK------KLGIKE-----------------KKDRKDLGREEFREE------------------------------ 103 (601)
T ss_dssp HHHHHH------HTTTTS-----------------HHHCSCSTHHHHHHH------------------------------
T ss_pred hhhHHH------hhcccc-----------------cccccccccccchhh------------------------------
Confidence 999986 334310 011223333343333
Q ss_pred hcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCcccccccc
Q 039882 235 FQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDR 314 (1142)
Q Consensus 235 f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev 314 (1142)
|++|++++.+.|++||++||+++||+|+|.|+| |.|+++++|+|.+|+++||||||.+||+|||+|+|+|||||+
T Consensus 104 ---~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d--~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 104 ---CREWAEEFIEEQKEQFKRLGVSIDWDREYFTMD--PEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT--SECTCEEETTS--HHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred ---hcchhhhhhhhhhhhhhheeeecccCCceEECC--ccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 457888888999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred ccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHh
Q 039882 315 ASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALN 394 (1142)
Q Consensus 315 ~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~ 394 (1142)
++++..+++ ++|+|++.+ +.+++|+||||||||||||+||||||+.+|+ . +++.||+++.++.+
T Consensus 179 ~~~~~~~~~--~~v~f~~~~----------~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~-~~~~~i~~~~~~~~ 242 (601)
T PF00133_consen 179 EYKEVKSPS--IYVKFPLKD----------GEEVYLVIWTTRPETLPGNTAIAVNPDFDYV---I-NGERYIVAKDLVEK 242 (601)
T ss_dssp EEEEEEEEE--EEEEEEESS----------SSEEEEEEEES-GGGGGG-BEEEE-TTSEEE---E-TTEEEEEEHHHHHH
T ss_pred ccccccCce--EEEEEEecC----------ccceEEEEEechhhHHhCCeeEEECCCccce---e-CCeeehHHHHHHHH
Confidence 999877665 557888765 3457999999999999999999999999999 3 57999999999998
Q ss_pred hhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHH
Q 039882 395 LAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFR 474 (1142)
Q Consensus 395 l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~ 474 (1142)
+.+|.. .. +.+++|++|+|++|.||+++ +.+||++++||++++|||+||+|||||++||++++
T Consensus 243 ~~~~~~------~~-~~~~~g~~L~g~~~~~P~~~-~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~--------- 305 (601)
T PF00133_consen 243 LSKQEK------TK-LEDFRGKELVGLKYIHPLTG-REVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGK--------- 305 (601)
T ss_dssp HHTTTS------SS-EEEEECHHHTTSEEE-TTSS-SSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHH---------
T ss_pred HHhhhh------hc-ccccCcceecCcEecccccc-ceeEEEcccccccccchhhhhhcccCCHHHHHHHh---------
Confidence 877632 12 89999999999999999974 68999999999999999999999999999999874
Q ss_pred HhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHH
Q 039882 475 AKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPL 554 (1142)
Q Consensus 475 ~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~ 554 (1142)
++++ +++.+| ++.|++.. .+|+|+|++|++||++
T Consensus 306 -~~~l--------~~~~~i--d~~G~~~~-----------------------------------~~~~~~G~~v~~ar~~ 339 (601)
T PF00133_consen 306 -KHNL--------PIINPI--DEDGRFTE-----------------------------------EAGKFKGMKVFEAREK 339 (601)
T ss_dssp -HHHH--------CCGCCC--CCTSTBBS-----------------------------------CCSTTTTSBHHHHHHH
T ss_pred -hcCc--------eeeEec--CCCceEee-----------------------------------cccccCCceeeeccHH
Confidence 5665 234444 45555431 1589999999999999
Q ss_pred HHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCce
Q 039882 555 IRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQW 632 (1142)
Q Consensus 555 I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW 632 (1142)
|++.|+++|+++..++ +.+|+|||||+||++++++||||+|+ +||+++++++++|+|+|++++++|.+||+|++||
T Consensus 340 ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~--~~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DW 417 (601)
T PF00133_consen 340 IIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYD--DWKKKALEALEKIKFYPESYRKRFENWIDNLRDW 417 (601)
T ss_dssp HHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHH--HHHHHHHHHHHTSEESSSTCHHHHHHHHHT--EE
T ss_pred HHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecH--HhHHHHHhhcccceEEcccchhhhhhhccccccc
Confidence 9999999999997765 46789999999999999999999996 5999999999999999999999999999999999
Q ss_pred eeecccCCCccCCCCCceeeccCCCcceeee-hhhhhhhccc----Ccc-------cCCCCCCCCCCCCCccceEEEeeC
Q 039882 633 ACSRSFGLGTRIPWDPQFLVESLSDSTIYMA-YYTVAHMLHK----GDM-------YGSTTGSIEPGQMTDEVWEFIFCG 700 (1142)
Q Consensus 633 ~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~-~~ti~~~l~~----~~~-------~g~~~~~~~~e~~~~dv~D~wFds 700 (1142)
||||||+||||||+ |.++++++..++.. .+.+...+.. .++ .+.+.+.+. .++||||+||||
T Consensus 418 cISRQR~WG~PIPi---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~dvlD~WfdS 491 (601)
T PF00133_consen 418 CISRQRYWGTPIPI---WYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELR---RDTDVLDTWFDS 491 (601)
T ss_dssp E-EESSSSSEBETE---EEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEE---EHS-EE-HHHHH
T ss_pred hhhccCCCCcccee---eecccCcccccccccccccccccccccccccccccccccccccccceE---Eeeeeccccccc
Confidence 99999999999996 66666554433221 1111211111 000 000001111 157999999999
Q ss_pred CCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccC
Q 039882 701 GPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKST 778 (1142)
Q Consensus 701 ~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~ 778 (1142)
|++|.. .++|.+ ++++|++|||+|+|++|+||+||||++++++++++++..|| ++|++||||+ .+|+|||||+
T Consensus 492 g~~~~~~~~~~~~----~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~ 566 (601)
T PF00133_consen 492 GLWPFAVLGWPEN----DREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPF-KKVITHGFVLDEDGRKMSKSK 566 (601)
T ss_dssp CTCHHHHTTSTTC----SCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSB-SEEEEE--EEETTSSB-BTTT
T ss_pred cCCcccccccccc----cchhccccCCcccccCCccchhhHHHHhHhhccccccCCch-heeeecccccccceeecccCC
Confidence 998864 456654 47899999999999999999999999999999999999999 9999999999 6899999999
Q ss_pred CCcCChHHHHHHcChhhhhhhhhccCCCCCCccch
Q 039882 779 GNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV 813 (1142)
Q Consensus 779 GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs 813 (1142)
||||+|.++|++||||++|||+++++++.+|++||
T Consensus 567 GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 567 GNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred CcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999999999999999888999999996
No 23
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-127 Score=1122.76 Aligned_cols=737 Identities=23% Similarity=0.335 Sum_probs=618.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCce
Q 039882 62 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANV 141 (1142)
Q Consensus 62 ~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~V 141 (1142)
..+..|++..+|..|..+|++++.|+.....+. .+.|.+..|||+++|.||||||++.++.|.++||+||.||+|
T Consensus 41 ~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~-----~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~v 115 (995)
T KOG0432|consen 41 PLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNP-----GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQV 115 (995)
T ss_pred cccccCCccchHHHHHHHHHHcCCCCcccCCCC-----CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 345678889999999999999999998765332 589999999999999999999999999999999999999999
Q ss_pred eecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHH
Q 039882 142 LLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEI 221 (1142)
Q Consensus 142 l~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i 221 (1142)
+|.||+||+|+.++..|||... ..| ..+|+++++++|.++
T Consensus 116 lw~PG~DHAGIATQ~VVEK~l~---~~~--------------------~~~Rh~lgRe~F~~~----------------- 155 (995)
T KOG0432|consen 116 LWVPGTDHAGIATQVVVEKQLA---REG--------------------GKTRHDLGREEFLKE----------------- 155 (995)
T ss_pred eecCCccccchhHHHHHHHHHH---Hhc--------------------CcchhhcCHHHHHHH-----------------
Confidence 9999999999999999998432 112 235667777777654
Q ss_pred HHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeec
Q 039882 222 MRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIY 301 (1142)
Q Consensus 222 ~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w 301 (1142)
.++|.+.+...+.+|+++||.++||+|+++||| |...+.|...|.+|++.|+|||+.|.|||
T Consensus 156 ----------------vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD--~~~s~AV~eAFvrL~eeglIyR~~rlVNW 217 (995)
T KOG0432|consen 156 ----------------VWEWKEEYGGRIYNQLKRLGASLDWDREAFTMD--PKLSRAVTEAFVRLHEEGLIYRANRLVNW 217 (995)
T ss_pred ----------------HHHHHHHhCccHHHHHHHhcCcccccHhhcccC--HHHHHHHHHHHHHHHhcCceEecCceeee
Confidence 468888899999999999999999999999999 88999999999999999999999999999
Q ss_pred cCCCCccccccccccCCccccccc------eeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCcee
Q 039882 302 SPLDDQPCADHDRASGEGVQPQDY------TLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYG 375 (1142)
Q Consensus 302 ~p~~~t~lad~ev~~~e~~~~~~y------~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~ 375 (1142)
||..+|+++|.||++.+..++... ..|.|.+. ....+.+.|.+..++++|||||||+|++||||||+
T Consensus 218 ~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L---~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~---- 290 (995)
T KOG0432|consen 218 CPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVL---YSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPD---- 290 (995)
T ss_pred chhHHhhhhhheecceecCCCceEecCCCCcceeeeee---eEEEEeccCCCCeEEEecCCccccccceeEEeCCC----
Confidence 999999999999999876544210 11222221 22233456666799999999999999999999999
Q ss_pred EEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCC
Q 039882 376 AFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPS 455 (1142)
Q Consensus 376 ~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pa 455 (1142)
|. +| ++|.|+.++|||+ ++.+|||.+.+|++++|||+|.++||
T Consensus 291 ------D~------------RY------------------k~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPa 333 (995)
T KOG0432|consen 291 ------DD------------RY------------------KHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPA 333 (995)
T ss_pred ------Cc------------cc------------------ccccCceeecCCC-CCccceeecccccccccccceEecCC
Confidence 33 44 4678999999999 68899999999999999999999999
Q ss_pred CChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccc
Q 039882 456 DAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTE 535 (1142)
Q Consensus 456 h~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~ 535 (1142)
|++.||+++ +++|| +++.||+. +
T Consensus 334 Hd~nDyEvg----------kRh~L--------~~~ni~~~---------------------------------------d 356 (995)
T KOG0432|consen 334 HDPNDYEVG----------KRHNL--------EFINIFTD---------------------------------------D 356 (995)
T ss_pred CChhHHHHH----------HhcCC--------CceeEEcC---------------------------------------C
Confidence 999999876 67997 35667653 3
Q ss_pred cccc--ccCCCCcchHhhhHHHHHHHHHcCCeeeeecc--CccccccCCCeEEEcccCccceecCchHHHHHHHHHHh--
Q 039882 536 GTML--VGDFAGKKVQDAKPLIRSKLIETGEAIMYSEP--EKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLN-- 609 (1142)
Q Consensus 536 g~~~--~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~--~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~-- 609 (1142)
|.|+ +|+|.||++++||++|++.|++.|++.....+ .-|+|+|||+.+++.+.+|||++++ ++.++++++++
T Consensus 357 G~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~--ema~~A~~av~sG 434 (995)
T KOG0432|consen 357 GLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCK--EMAKKALKAVESG 434 (995)
T ss_pred CceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehH--HHHHHHHHHHhcC
Confidence 4443 78999999999999999999999998754443 2489999999999999999999996 69999999998
Q ss_pred cCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceee---ccCCCcceeeehhhhhhhccc-CcccCCCCCCCC
Q 039882 610 SMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLV---ESLSDSTIYMAYYTVAHMLHK-GDMYGSTTGSIE 685 (1142)
Q Consensus 610 ~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~i---esl~d~~iy~~~~ti~~~l~~-~~~~g~~~~~~~ 685 (1142)
+++++|+..++.+..|+++.+|||||||.|||++||. |.+ +...++.-|++..+.+..+++ ....| .+..++
T Consensus 435 ~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPA---y~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g-~~~~~~ 510 (995)
T KOG0432|consen 435 KLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPA---YFVNLSDGRAEEDYWVVARSEEEAREKAAEKFG-PGKEFT 510 (995)
T ss_pred CeEECchHHHHHHHHHHhhccccchhhhhhhccccce---eeeecccCCCccceeEEeCCHHHHHHHHHHHhC-Ccccce
Confidence 7999999999999999999999999999999999994 332 123345556654444444332 23455 223466
Q ss_pred CCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEe
Q 039882 686 PGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCN 764 (1142)
Q Consensus 686 ~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~h 764 (1142)
.++ ++||+||||+||++|++ .|||+++ ++|..+||.++.-+|+||++||...+++...-+.|+.|| +.|+.|
T Consensus 511 L~q-DpDVLDTWFSS~L~PfS~lGWP~~t-----~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF-~~V~LH 583 (995)
T KOG0432|consen 511 LEQ-DPDVLDTWFSSGLWPFSTLGWPEET-----KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPF-KEVLLH 583 (995)
T ss_pred eec-CccHHHhhhhcccccchhcCCcccc-----ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCc-hheeec
Confidence 666 68999999999999997 6999864 578899999999999999999999999999999999899 999999
Q ss_pred eEEe-ecCccccccCCCcCChHHHHH-------------------------------------HcChhhhhhhhhccCCC
Q 039882 765 GHIM-LNSEKMSKSTGNFRTLKQAIE-------------------------------------EFSADATRFSLADAGDG 806 (1142)
Q Consensus 765 G~vl-~~G~KMSKS~GNvI~p~~~i~-------------------------------------~yGaDalRl~la~~~~~ 806 (1142)
|+|. -+|+|||||+||||||.|+|+ +.|.|||||.|++.+..
T Consensus 584 ~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~ 663 (995)
T KOG0432|consen 584 GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQ 663 (995)
T ss_pred hhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHcccc
Confidence 9999 799999999999999999996 35999999999999889
Q ss_pred CCCccchHHHHH---HHHHHHHHHHHHHHHHHhhh-cc--CC-CCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 039882 807 VDDANFVFDTAN---TGILRLTKEIAWMEEVLAVE-SS--LR-TGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK 879 (1142)
Q Consensus 807 ~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~-~~--~~-~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~ 879 (1142)
+.|+|++...+. .++|||||..+|+...+... .. .. .+.....+|+||+++|+.+++.+.++|+.|+|+.|..
T Consensus 664 ~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~ 743 (995)
T KOG0432|consen 664 GRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATS 743 (995)
T ss_pred CccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999988764 68999999999998764321 00 00 1111113899999999999999999999999999997
Q ss_pred HHHHH--HHhhhHHHHHhcCCc---------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCC----CeEeccC
Q 039882 880 TGFYD--LQAARDEYRLSCGAG---------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDG----FAVKAGW 944 (1142)
Q Consensus 880 ~~~~~--l~~~~~~Y~~~~~~~---------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~----sv~~~~w 944 (1142)
+ +|. +.++||.|++..++. ..+..+|+.+++..++||+|||||+|||+||+|+..++ ||..++|
T Consensus 744 a-~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~~~~~si~va~y 822 (995)
T KOG0432|consen 744 A-LYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASISVSPY 822 (995)
T ss_pred H-HHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCCCCCCceEecCC
Confidence 6 554 468999999988762 12467999999999999999999999999999975544 8999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 945 PTYGTP--DLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 945 P~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
|..... |++++..++.+.+++..+|+.+..+.
T Consensus 823 P~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~ 856 (995)
T KOG0432|consen 823 PSSNELWRNEELESAFELVLAITRAIRSLRAEYN 856 (995)
T ss_pred CchhcccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 944433 99999999999999999999988764
No 24
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-126 Score=1071.28 Aligned_cols=849 Identities=20% Similarity=0.273 Sum_probs=664.1
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
...++++-|+++.++|.+.+.|+...+..++ +|+|.+.||||+|+|.+|.||.+.-||+|++.||..|+||.|-..
T Consensus 6 ~n~nfp~eEEkvle~W~e~~aF~~slk~sk~----rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRR 81 (1070)
T KOG0434|consen 6 ENFNFPKEEEKVLEFWREIDAFHTSLKLSKG----RPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERR 81 (1070)
T ss_pred ccCCCchhHHHHHHHHHHhhHHHHHHHhhCC----CCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeee
Confidence 4457788899999999999999976655443 799999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
|||||||||+|...+| ++|+.. ..+--.++.++|..+|++.+.+..
T Consensus 82 FGWD~HGlPVE~eIDK------kLgI~g-----------------~~dV~kmGI~kYN~ECR~IVmrYs----------- 127 (1070)
T KOG0434|consen 82 FGWDTHGLPVEYEIDK------KLGITG-----------------RDDVMKMGIDKYNNECRKIVMRYS----------- 127 (1070)
T ss_pred cccccCCCccceeech------hcCCCC-----------------HHHHHHHhHHhHhHHHHHHHHHHH-----------
Confidence 9999999999998886 557631 000013556777777776654422
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
...++.+.|||-|+|+++-|.||+ |.|.+.|+|+|.+|+++|+||||.+...||..
T Consensus 128 ----------------------sEWe~tv~RlGRWidF~ndYkTmy--p~FMESvWwvFkeL~~kglVYRG~kVMP~STa 183 (1070)
T KOG0434|consen 128 ----------------------SEWEKTVERLGRWIDFDNDYKTLY--PSFMESVWWVFKELHEKGLVYRGFKVMPYSTA 183 (1070)
T ss_pred ----------------------HHHHHHHHhhccceeccCCcceec--HHHHHHHHHHHHHHHhcCceecceeeeccccc
Confidence 344678999999999999999999 99999999999999999999999999999999
Q ss_pred CCccccccccc--cCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEec-C
Q 039882 305 DDQPCADHDRA--SGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEIS-E 381 (1142)
Q Consensus 305 ~~t~lad~ev~--~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~-~ 381 (1142)
|.||||+-|.. |++...|. +.|.|++.. ...+.|++|||||||||+|.|+||||+..|+.++-. .
T Consensus 184 c~TPLSNFEa~QNYKdV~DPa--v~v~F~li~----------~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~ 251 (1070)
T KOG0434|consen 184 CTTPLSNFEAQQNYKDVPDPA--VFVAFPLIG----------DPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTT 251 (1070)
T ss_pred cCCcccchhcccCcccCCCCe--EEEEeeccC----------CcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccC
Confidence 99999998764 55556665 557788765 246899999999999999999999999999999864 3
Q ss_pred CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCC------CceEEEccCCccccCCCCCccccCCC
Q 039882 382 TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSF------NEVIYALPMLTILTDKGTGIVTSVPS 455 (1142)
Q Consensus 382 ~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~------~~~v~il~~~~V~~~~GTGiV~~~Pa 455 (1142)
+..||+.+..+..+ |. .+...+++++..+.|++|.|++|..+|.. .....|+.++||+.+.||||||+||+
T Consensus 252 ~k~yil~esrl~~l-~k--~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~ 328 (1070)
T KOG0434|consen 252 GKKYILMESRLGEL-YK--NPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPA 328 (1070)
T ss_pred CeEEEEeHHHHHHH-hc--CcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCc
Confidence 56899988766543 21 12245799999999999999999988742 23589999999999999999999999
Q ss_pred CChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccc
Q 039882 456 DAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTE 535 (1142)
Q Consensus 456 h~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~ 535 (1142)
.|++||.+|. ..||-.+- ...++| +|+.|+++.+
T Consensus 329 FGe~Dy~~c~----------~~giI~~d--~~~~cp---VDe~G~~Tse------------------------------- 362 (1070)
T KOG0434|consen 329 FGEEDYRACV----------ANGIIRKD--SLPPCP---VDESGLFTSE------------------------------- 362 (1070)
T ss_pred cChhhHHHHH----------HcCcccCC--CCCCCc---cccCCccccc-------------------------------
Confidence 9999999984 46653221 122334 4777876532
Q ss_pred ccccccCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCce
Q 039882 536 GTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNL 613 (1142)
Q Consensus 536 g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~ 613 (1142)
+..|+|..|++|.+.|++.|++.|.++.... |++|.||||.+|++|++.|.||+++ +++.+++++...+..|
T Consensus 363 ----v~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrV--k~~v~~ll~nn~~t~W 436 (1070)
T KOG0434|consen 363 ----VTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRV--KNIVDQLLRNNMKTHW 436 (1070)
T ss_pred ----cccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhH--HHHHHHHHhccccccc
Confidence 5689999999999999999999999997765 7899999999999999999999999 4799999999999999
Q ss_pred eCchhh-hhHHHhhhcCCceeeecccCCCccCC-C--C--C-ceeeccCCCcceeeehhhhhhhcccCcccC----CCCC
Q 039882 614 YHDENR-HGFEHTLGWLNQWACSRSFGLGTRIP-W--D--P-QFLVESLSDSTIYMAYYTVAHMLHKGDMYG----STTG 682 (1142)
Q Consensus 614 ~P~~~r-~~~~~~i~~l~DW~ISRqr~WG~PIP-~--d--~-~~~iesl~d~~iy~~~~ti~~~l~~~~~~g----~~~~ 682 (1142)
+|+..| +||.+|+.+.+||.|||+|+|||||| | | + ..+++|..+..-..+ ..|.. |++..+++ +.+|
T Consensus 437 VP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG-~kItD-lHRe~iD~itIps~~g 514 (1070)
T KOG0434|consen 437 VPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSG-VKITD-LHRESIDHITIPSKKG 514 (1070)
T ss_pred CChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcC-Ccchh-hhhhhcCceecccCCC
Confidence 999998 68999999999999999999999999 6 1 1 234444321110000 00111 11111111 1111
Q ss_pred --CCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCc
Q 039882 683 --SIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPR 759 (1142)
Q Consensus 683 --~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk 759 (1142)
.+ ..+.+|||+||.||++|++ .+||++. +++|+.-+|+|+.-+|.||.||||+..+..+.+||++.|+ +
T Consensus 515 kg~l---~Rv~eVfDCWFESGSMPYAq~HyPFen----k~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppf-k 586 (1070)
T KOG0434|consen 515 KGVL---HRVSEVFDCWFESGSMPYAQRHYPFEN----KEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPF-K 586 (1070)
T ss_pred Ccce---ehhhhHhhhhhccCCCcchhhcCCccc----hHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcc-h
Confidence 12 2367999999999999997 5899985 6789999999999999999999999999999999999999 9
Q ss_pred EEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCC-CCCCccchHHHHHHH----HHHHHHHHHHHHH
Q 039882 760 GFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD-GVDDANFVFDTANTG----ILRLTKEIAWMEE 833 (1142)
Q Consensus 760 ~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~-~~~D~~fs~~~~~~~----~~kl~n~~~~~~~ 833 (1142)
+|++||.|+ .+|+|||||+.|..+|..+|++||||||||||+++.- ..+...|.++.+... +.-.+|.++|+.+
T Consensus 587 NvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~q 666 (1070)
T KOG0434|consen 587 NVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQ 666 (1070)
T ss_pred heeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999 8999999999999999999999999999999998843 357789999887654 4568999999887
Q ss_pred HHhhhccC-----C---CCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCc------
Q 039882 834 VLAVESSL-----R---TGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAG------ 899 (1142)
Q Consensus 834 ~~~~~~~~-----~---~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~------ 899 (1142)
........ . .....+.+|+||++.++.++.-+++.|+.|+...++-..+-.++...|||++....+
T Consensus 667 n~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G 746 (1070)
T KOG0434|consen 667 NAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENG 746 (1070)
T ss_pred HHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhhcCCCc
Confidence 76543211 1 011224799999999999999999999999999999874444678999998765432
Q ss_pred ----cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhh---------cCCCCeEeccCCCCCCC--CHHHHHHHHHHHHH
Q 039882 900 ----GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVIL---------KKDGFAVKAGWPTYGTP--DLILKSANKYLQDS 964 (1142)
Q Consensus 900 ----~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~---------~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~ 964 (1142)
..+..+|..+|.+++++|+||+||+||.|||+|- +...|||...+|.+.+. |+.++..++.++.+
T Consensus 747 ~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~si 826 (1070)
T KOG0434|consen 747 EHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSI 826 (1070)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccchHHHHHHHHHHH
Confidence 1234689999999999999999999999999983 12468999999998875 88899999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCcCccCCCcE-EEEEecCCChhhHHHHHHHHHhhhhccCCCCCCcHHHHHH-hh--
Q 039882 965 IVLMRKLLQKQILGSKKANKKGAPVATLTEDKLK-GLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEA-LQ-- 1040 (1142)
Q Consensus 965 i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~-v~i~va~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-- 1040 (1142)
|..+|.++.......|- +.++ +.|..+.+|-+=...+.+.+.+.+|.....+..+++-++. ++
T Consensus 827 Idl~R~iRern~islKt-------------PLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~d~~kyg~~lkae 893 (1070)
T KOG0434|consen 827 IDLARNIRERNTISLKT-------------PLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTSDEEKYGVVLKAE 893 (1070)
T ss_pred HHHHHHHhhccCCcccC-------------chhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeecccchhcceEEEec
Confidence 99999998765433221 2233 3343343333222233444555555443333333222221 11
Q ss_pred cccccccchhhHHHhHHhHHHHHhH
Q 039882 1041 NSSVGQASNFKQTQKLCMPFLRFKK 1065 (1142)
Q Consensus 1041 ~~~~~~~~~~k~~~k~~m~f~~~~~ 1065 (1142)
.+....+..+|+.+|++|+.++.+-
T Consensus 894 pd~~vLGkklk~~~kkv~~~l~~~t 918 (1070)
T KOG0434|consen 894 PDFPVLGKKLKKDMKKVKKALKQVT 918 (1070)
T ss_pred CCcHHHhHHHHHHHHHHHHHHhhcC
Confidence 1222224456788888888887654
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2.1e-119 Score=1134.03 Aligned_cols=666 Identities=22% Similarity=0.342 Sum_probs=505.0
Q ss_pred CChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 67 DRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 67 ~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++.++|++||++|+++++|+...+.. +++|++++|||||||.|||||++|++++|+++||+||+||+|+|++|
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~------k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G 74 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSN------KPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMG 74 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCC------CCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCC
Confidence 578899999999999999999876532 68899999999999999999999999999999999999999999999
Q ss_pred CCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcC
Q 039882 147 FHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFG 226 (1142)
Q Consensus 147 ~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~ 226 (1142)
|||||||||.+|++ .|++
T Consensus 75 ~D~~Glpie~~a~~-------~g~~------------------------------------------------------- 92 (842)
T TIGR00396 75 WDAFGLPAENAAIK-------RGIH------------------------------------------------------- 92 (842)
T ss_pred cCCCChHHHHHHHH-------cCCC-------------------------------------------------------
Confidence 99999999998853 2432
Q ss_pred CChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCC
Q 039882 227 LSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDD 306 (1142)
Q Consensus 227 i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~ 306 (1142)
|.+|++.+...++++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||+|.+||+|||.|+
T Consensus 93 -----------p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d--~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~ 159 (842)
T TIGR00396 93 -----------PAKWTYENIANMKKQLQALGFSYDWDREIATCD--PEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG 159 (842)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhCCcccCCCCcccCC--HHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCC
Confidence 335666666788999999999999999999998 9999999999999999999999999999999999
Q ss_pred cccccccccc-CCc----c------ccccceeE-eee--c------cCCCCCCcc-----------------cCCCCceE
Q 039882 307 QPCADHDRAS-GEG----V------QPQDYTLI-KME--V------LQPFPAKFG-----------------PLEGKKVY 349 (1142)
Q Consensus 307 t~lad~ev~~-~e~----~------~~~~y~~i-kf~--~------~~~~~~~~~-----------------~l~~~~~~ 349 (1142)
|+||++|+.+ |.+ . ..|+|..+ +|. + .+.||+.++ .+.+.+.+
T Consensus 160 t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~ 239 (842)
T TIGR00396 160 TVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEK 239 (842)
T ss_pred CCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCE
Confidence 9999999953 211 1 12333211 010 0 112443221 12333458
Q ss_pred EEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCC--CCeeeEeEecceecCCeEecCC
Q 039882 350 LAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPK--KPTCLVELTGYDLIGLPLKSPL 427 (1142)
Q Consensus 350 l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~--~~~~~~~~~G~~L~G~~~~~Pl 427 (1142)
|+||||||||||||+||+|||+++|+.+.... ...+.. +.......+ +..++.+.+|..|+|+++.||+
T Consensus 240 l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~-------~~~v~~--~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 310 (842)
T TIGR00396 240 IAVFTTRPDTIFGVTYLALAPEHPLVEKIAEN-------NPKVAA--FIKKILQKTTTERTKETKLKKGVFTGIKAIHPL 310 (842)
T ss_pred EEEEeCCcHHhhhccEEEECCCCHHHHhhhcc-------hHHHHH--HHHHHhccCchhhhhhhcccccEecCCEEECCC
Confidence 99999999999999999999999998764211 111221 111110011 1234456788889999999999
Q ss_pred CCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhh
Q 039882 428 SFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVC 507 (1142)
Q Consensus 428 ~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~ 507 (1142)
+ ++.+||+.++||++++|||+||+|||||++||+++ ++|||+ ++++|+.+ |.-.
T Consensus 311 ~-~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~----------~k~~L~--------i~~vi~~~--~~~~----- 364 (842)
T TIGR00396 311 T-GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFA----------QKYKLP--------IKVVIDPA--GKNL----- 364 (842)
T ss_pred C-CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHH----------HHhCCC--------cceeeCCc--cccc-----
Confidence 7 47899999999999999999999999999999865 689974 45566532 2100
Q ss_pred hhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEEEc
Q 039882 508 TDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVA 586 (1142)
Q Consensus 508 ~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i~~ 586 (1142)
..+.|.+ +|+|+ .|+|+|+.+.+|+++|++.|++.|.+.. + +.+
T Consensus 365 -----------------~~~~~~~---~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~------~--------v~y- 409 (842)
T TIGR00396 365 -----------------KTQAFTE---DGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKR------K--------VNY- 409 (842)
T ss_pred -----------------ccccccC---CceEecchhcCCCCHHHHHHHHHHHHHHcCCCCc------e--------EEe-
Confidence 0112332 57774 6899999999999999999999998641 1 111
Q ss_pred ccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCC-----Cccee
Q 039882 587 LTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLS-----DSTIY 661 (1142)
Q Consensus 587 ~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~-----d~~iy 661 (1142)
+++||||||||+||||||+ |.|+++. ++.+.
T Consensus 410 -----------------------------------------rlrDW~ISRQRyWG~PIPi---~~~~~~g~~~v~~~~lp 445 (842)
T TIGR00396 410 -----------------------------------------RLRDWLFSRQRYWGEPIPI---IHCEDGGAVPVPEEDLP 445 (842)
T ss_pred -----------------------------------------ecccceeecccccCCceEE---EEECCCCeEeCcchhcc
Confidence 3789999999999999995 3333221 00000
Q ss_pred eehhhhhhhcc-c--C--------c---ccCCCCCCCCCCCCCccceEEEeeCC------CCCCCCCCChhhHhhhHHhh
Q 039882 662 MAYYTVAHMLH-K--G--------D---MYGSTTGSIEPGQMTDEVWEFIFCGG------PYPESSNIPSSILNRMKQEF 721 (1142)
Q Consensus 662 ~~~~ti~~~l~-~--~--------~---~~g~~~~~~~~e~~~~dv~D~wFds~------~~~~~~~~~~~~l~~~~~ef 721 (1142)
. .+..... . + + .....||. +-...+||||+||||+ ++|....++.+ +++|
T Consensus 446 ~---~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~--~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~-----~~~~ 515 (842)
T TIGR00396 446 V---ILPELVNYDPDGNSPLSRIQEWVNVTCPSCGK--PALRETDTMDTFAGSSWYYLRYLDPKNTDQPFD-----KEKA 515 (842)
T ss_pred h---hhhhhhhccCCCCCchhhhhhhhcCcCccCCC--CcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcC-----hHHH
Confidence 0 0000000 0 0 0 00111221 1123679999999987 23332233332 5678
Q ss_pred hhcCCcceEEeecccchhhHHHHHHHHHHHhcCC------CCCcEEEEeeEEee-----cCc------------------
Q 039882 722 EYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR------HWPRGFRCNGHIML-----NSE------------------ 772 (1142)
Q Consensus 722 ~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~------~~Pk~v~~hG~vl~-----~G~------------------ 772 (1142)
++|||+|+|++|.||+..||.|+++++.+|+... || ++|++||||+. +|+
T Consensus 516 ~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pf-k~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~ 594 (842)
T TIGR00396 516 EYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPF-KKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSG 594 (842)
T ss_pred hccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccH-HHHhccceEEeeeecCCCCccChhhhccccccccccC
Confidence 9999999999999999999999999998887543 55 99999999996 888
Q ss_pred ---------cccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhcc
Q 039882 773 ---------KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVESS 840 (1142)
Q Consensus 773 ---------KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~ 840 (1142)
|||||+||+|+|.++|++||||++|||+++++++.+|++|+++.+. ++++++||+++++...+.....
T Consensus 595 ~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~ 674 (842)
T TIGR00396 595 GELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTY 674 (842)
T ss_pred CcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999988789999999999875 5678899998876554422111
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcc-HHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhc
Q 039882 841 LRTGPPSTYADRVFENEINIAVEMTDQHYKNYM-FREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITP 919 (1142)
Q Consensus 841 ~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~-f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaP 919 (1142)
+....+ ...|+|+++++++++++++++|++|+ |++|++. +|+|.+....|.. ..+++.++..+++||||
T Consensus 675 ~~~~~l-~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~-l~~f~n~L~~~~~--------~~~l~~~l~~ll~lLaP 744 (842)
T TIGR00396 675 LTPTIL-EEAQKELRRDVHKFLKKVTEDLEKLESFNTAISA-MMILLNALYKAKK--------DALYLEYLKGFLTVLSP 744 (842)
T ss_pred CCcccC-CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhhh--------HHHHHHHHHHHHHHHhh
Confidence 111222 47899999999999999999999998 9999976 8888765554321 13788999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCCeEeccCCCCC
Q 039882 920 ICPHYAEYVWRVILKKDGFAVKAGWPTYG 948 (1142)
Q Consensus 920 i~P~~aEeiw~~L~~~~~sv~~~~wP~~~ 948 (1142)
|+||+|||||+.|.+.++||+.++||+++
T Consensus 745 f~PhiaEElW~~l~~~~~sv~~~~wP~~d 773 (842)
T TIGR00396 745 FAPHLAEELWEKLGSEPFIIKQAKWPKVD 773 (842)
T ss_pred hhhHHHHHHHHHhCCCCCeeecCCCCCCC
Confidence 99999999999983333589999999865
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-119 Score=1135.30 Aligned_cols=683 Identities=21% Similarity=0.299 Sum_probs=499.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCc-CchhhhhhhhHHHHHHHHHHHcC
Q 039882 60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGY-LHLGHAFSFSKLEFAAAYHRLKG 138 (1142)
Q Consensus 60 ~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~-LHiGHa~~~~~~D~i~Ry~rm~G 138 (1142)
...+++.+++.++|++||++|+++++|+...+.+.+ +|+|++++|||||||. |||||++|++++|+++||+||+|
T Consensus 73 ~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~----k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G 148 (963)
T PLN02563 73 TPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTS----KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQG 148 (963)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCccccccccCC----CCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 347889999999999999999999999976532222 6899999999999997 99999999999999999999999
Q ss_pred CceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhH
Q 039882 139 ANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQ 218 (1142)
Q Consensus 139 ~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 218 (1142)
|+|+||+||||||||||.+|.+ .|..
T Consensus 149 ~~Vl~~~G~D~~GlPiE~~a~~-------~g~~----------------------------------------------- 174 (963)
T PLN02563 149 YNVLHPMGWDAFGLPAEQYAIE-------TGTH----------------------------------------------- 174 (963)
T ss_pred CeecccccccccCcHHHHHHHH-------cCCC-----------------------------------------------
Confidence 9999999999999999988753 2432
Q ss_pred HHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceeccee
Q 039882 219 WEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRY 298 (1142)
Q Consensus 219 ~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~p 298 (1142)
|..|+..+...+++||++||+++||+|+|.|+| |.|.+++||+|.+|+++||||+|.++
T Consensus 175 -------------------p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~d--p~y~~~~q~~F~~L~~~GliY~~~~~ 233 (963)
T PLN02563 175 -------------------PKITTLKNIARFRSQLKSLGFSYDWDREISTTE--PEYYKWTQWIFLQLLKRGLAYQAEVP 233 (963)
T ss_pred -------------------hHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCC--HHHHHHHHHHHHHHHHCCCEEeeeee
Confidence 234445555678999999999999999999998 99999999999999999999999999
Q ss_pred eeccCCCCccccccccccCCcc-c---------cccceeEe---------eeccCCCCCCcc-----------------c
Q 039882 299 TIYSPLDDQPCADHDRASGEGV-Q---------PQDYTLIK---------MEVLQPFPAKFG-----------------P 342 (1142)
Q Consensus 299 v~w~p~~~t~lad~ev~~~e~~-~---------~~~y~~ik---------f~~~~~~~~~~~-----------------~ 342 (1142)
|+|||.|+|+||++||+++.+. + .|+|..|. +...+ ||+.+. .
T Consensus 234 v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~-wp~~v~~~q~nwiG~s~g~~i~F~ 312 (963)
T PLN02563 234 VNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLD-WPESIKEMQRNWIGRSEGAELDFS 312 (963)
T ss_pred eeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcC-CCHHHHHHHHHhccccceEEEEEE
Confidence 9999999999999999987332 1 12221110 00011 332211 0
Q ss_pred CCC-----CceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCC--eeeEeEec
Q 039882 343 LEG-----KKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKP--TCLVELTG 415 (1142)
Q Consensus 343 l~~-----~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~--~~~~~~~G 415 (1142)
+.+ .+.+|+|||||||||||+++|+|||+++|+.+.+..+. ...++ +|........+. ......+|
T Consensus 313 ~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~-----~~~v~--~y~~~~~~~~~~~~~~~~~~k~ 385 (963)
T PLN02563 313 VLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQ-----KEAVE--EYVDAASRKSDLERTELQKEKT 385 (963)
T ss_pred ecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccc-----hHHHH--HHHHHHhchhHHhhhhccceec
Confidence 111 23589999999999999999999999999865432111 00011 121110000111 11234567
Q ss_pred ceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecC
Q 039882 416 YDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINI 495 (1142)
Q Consensus 416 ~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~ 495 (1142)
..+.|+.+.||++ ++.+||+.++||++++|||+||+|||||++||+++ ++|||+ ++++|..
T Consensus 386 g~~~g~~~~~P~~-~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a----------~k~~Lp--------i~~vI~~ 446 (963)
T PLN02563 386 GVFTGSYAINPAT-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFA----------QKFDLP--------IKWVVKP 446 (963)
T ss_pred ccccCcEEeccCC-CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHH----------HHcCCC--------ceeeecc
Confidence 7899999999997 47899999999999999999999999999999864 789974 3455532
Q ss_pred CCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccC----CCCcchHhhhHHHHHHHHHcCCeeeeec
Q 039882 496 PEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGD----FAGKKVQDAKPLIRSKLIETGEAIMYSE 570 (1142)
Q Consensus 496 ~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~----~~G~~v~ea~~~I~~~L~~~g~l~~~~e 570 (1142)
++ +... + .+.+|.+ +|+|. .|. |.|+.+.+|+++|++.|.+.|.+..
T Consensus 447 ~d-~~~~--------------~-------~~~~y~~---~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~--- 498 (963)
T PLN02563 447 AD-GNED--------------D-------AEKAYTG---EGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK--- 498 (963)
T ss_pred Cc-cccc--------------c-------ccccccC---ceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC---
Confidence 11 1100 0 0123332 46663 454 9999999999999999999998631
Q ss_pred cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCce
Q 039882 571 PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQF 650 (1142)
Q Consensus 571 ~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~ 650 (1142)
+ ++| +|+|||||||||||+|||+ |
T Consensus 499 ---~------------------------------------v~y--------------~lrDW~ISRQRyWG~PIPi---~ 522 (963)
T PLN02563 499 ---K------------------------------------VNY--------------KLRDWLFARQRYWGEPIPV---V 522 (963)
T ss_pred ---e------------------------------------eEe--------------cCCCceEeeecccCCceEE---E
Confidence 1 121 4889999999999999995 4
Q ss_pred eeccCCCcceeeehhhhhhhcc---cCccc-----------------CCCCCCCCCCCCCccceEEEeeCCCCCCCCCCC
Q 039882 651 LVESLSDSTIYMAYYTVAHMLH---KGDMY-----------------GSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIP 710 (1142)
Q Consensus 651 ~iesl~d~~iy~~~~ti~~~l~---~~~~~-----------------g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~ 710 (1142)
+|+++. +++++.-..+.-.|. ..... ...||. +-....||||+||+|+.++....+|
T Consensus 523 ~c~~cg-~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~--~~~RetDtmDtw~~Sswy~~r~~~p 599 (963)
T PLN02563 523 FLEDSG-EPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGK--PARRETNTMPQWAGSCWYYLRFMDP 599 (963)
T ss_pred EEcCCC-cEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCC--CcEECCCcCCchhhccHHHHHHhCC
Confidence 444332 233222100000000 00000 111221 1223679999999886433223334
Q ss_pred hhhHhhh-HHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCC------CCCcEEEEeeEEe----------ecCc-
Q 039882 711 SSILNRM-KQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR------HWPRGFRCNGHIM----------LNSE- 772 (1142)
Q Consensus 711 ~~~l~~~-~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~------~~Pk~v~~hG~vl----------~~G~- 772 (1142)
.+.-+.. ++.+++|||+|+|++|.||+..||.|++||+.+++..+ || +.+++||||+ .+|+
T Consensus 600 ~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePf-k~ll~qGmVl~~~~~~~~~d~~G~~ 678 (963)
T PLN02563 600 KNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPF-QCLVNQGMILGEVEYTAFKDSDGEY 678 (963)
T ss_pred CccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccH-HHHhccceeecCccccceecCCCcC
Confidence 3211001 23357899999999999999999999999998887554 55 9999999998 4566
Q ss_pred --------------------------------------------cccccCCCcCChHHHHHHcChhhhhhhhhccCCCCC
Q 039882 773 --------------------------------------------KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVD 808 (1142)
Q Consensus 773 --------------------------------------------KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~ 808 (1142)
|||||+||||+|.++|++||||++|||+++++++.+
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~d 758 (963)
T PLN02563 679 VSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRD 758 (963)
T ss_pred cccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999988999
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 039882 809 DANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGP--PSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886 (1142)
Q Consensus 809 D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~--~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~ 886 (1142)
|.+|+.+.+....+.+.++++++..+......+.... .....|+|+++++++++++++++|++|+|++|++. +|+|.
T Consensus 759 d~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~-lmef~ 837 (963)
T PLN02563 759 SKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISA-MMEFT 837 (963)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Confidence 9999998887655545555444444311000111111 11256999999999999999999999999999987 67776
Q ss_pred hhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCCC
Q 039882 887 AARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYG 948 (1142)
Q Consensus 887 ~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~~ 948 (1142)
+..+. +. ..+.++++.+++||||||||+|||||+.| +..+||+.++||+++
T Consensus 838 n~l~~-------~~---~~~~~~l~~ll~LLaPf~PhiaEELW~~L-g~~~sv~~~~WP~~d 888 (963)
T PLN02563 838 NAAYK-------WD---KVPREAIEPFVLLLSPYAPHLAEELWFRL-GHSNSLAYEPWPEAN 888 (963)
T ss_pred HHHhC-------ch---HHHHHHHHHHHHHHHhhhhhHHHHHHHHc-CCCCeeeeCCCCCCC
Confidence 54321 11 24578999999999999999999999998 556799999999875
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-121 Score=1107.75 Aligned_cols=727 Identities=27% Similarity=0.428 Sum_probs=609.6
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
+++++.+||+|||++|+++++|+.+.+.+. .+|||+++|+|||||.|||||++|||+.||++||+||+|||||||
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~-----~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~P 77 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDK-----PEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHP 77 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCCCCCC-----CCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeeccc
Confidence 567778999999999999999999877652 259999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
|||||+|||||+.|+++ |.
T Consensus 78 MGwdafGlPae~~A~~~-------~~------------------------------------------------------ 96 (814)
T COG0495 78 MGWDAFGLPAENAAIKI-------GT------------------------------------------------------ 96 (814)
T ss_pred CcccccCchHHHHHHHh-------CC------------------------------------------------------
Confidence 99999999999999752 21
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
+|.+|+++|++.+++||++||+++||+|+|.||| |+|++|+||||.+|+++||||+|.++|+|||.
T Consensus 97 ------------~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~D--p~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~ 162 (814)
T COG0495 97 ------------DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCD--PEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPV 162 (814)
T ss_pred ------------ChHHHHHHHHHHHHHHHHHhCCccccccceecCC--ccHHHHHHHHHHHHHHCCCEEeccccceeCCC
Confidence 5889999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCccccccccccC------CccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEE
Q 039882 305 DDQPCADHDRASG------EGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFE 378 (1142)
Q Consensus 305 ~~t~lad~ev~~~------e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~ 378 (1142)
|+|+||||||..| +.|.+.+++.+.|++.+ ..+.+ + +-....+|.+|||+.|.+++||+|+..|++..
T Consensus 163 d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~-yae~l--l---~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f 236 (814)
T COG0495 163 DGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITD-YADEL--L---DDLDKLATLWPETVKGMQRNWIGPSEGYEVAF 236 (814)
T ss_pred cCCccccceeecCCcccCCCceeEeeeEEEEEEech-hHHHH--H---hhhhhhccCCchhHHHHHHcCcCCCCCeEEEE
Confidence 9999999999988 77888999999998876 22111 0 11355678899999999999999999999987
Q ss_pred ecCCc-EEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCC
Q 039882 379 ISETD-VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDA 457 (1142)
Q Consensus 379 ~~~~e-~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~ 457 (1142)
..++. . +.+..++..+..| ...++.++...|..|+|..+.+|.. +++++||++..|||+|+++|+|.
T Consensus 237 ~~~~~~~-~~~~~vfttr~dt-----~~gvt~~~~a~~h~lv~~~~~~~~~------~~~a~fv~~~~~~~~~~~~~~~~ 304 (814)
T COG0495 237 VVDGEEE-IVSIEVFTTRPDT-----LFGVTYVVLAPEHPLVGKLVTNPQT------PLVAEFVDECKGTGVVESVPAHA 304 (814)
T ss_pred ecCCccc-ceeeeeeeccCcc-----ccCeEEEEEeCCchHHHHHhcCccc------hhHHHHHHHhcCCCceeeeeccC
Confidence 63222 2 4444443333333 2467889999999999999998874 67889999999999999999999
Q ss_pred hhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccc
Q 039882 458 PDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGT 537 (1142)
Q Consensus 458 ~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~ 537 (1142)
+.|+..+.- |-+.+ +.. +.+||+..+..|...+.. ..|+++++. .+.+++|+ .|+..++.|+
T Consensus 305 ~k~gv~~g~----------~a~~p--~~~-e~iPi~~a~~vl~~ygtg--avm~vpahd-~rd~efA~--~y~l~i~~vi 366 (814)
T COG0495 305 EKDGVFLGG----------YAINP--VNG-EKIPVWIANYVLMEYGTG--AVMGVPAHD-ERDLEFAT--KYKLPIKKVI 366 (814)
T ss_pred CCcceeccc----------cccCC--CCC-CcCCEEEeCccccccccc--ceecCCCCC-chhhHHHH--hcCCCeEEEE
Confidence 999986521 11111 222 678999888777777666 789999998 67899999 9999999998
Q ss_pred ccccCCCCcchHhhhHHHHHHHHHc-CCeeeeeccCccccccCCCeEEEcccCccceecCchHH-HHHHHHHHhcCceeC
Q 039882 538 MLVGDFAGKKVQDAKPLIRSKLIET-GEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEW-KRLATECLNSMNLYH 615 (1142)
Q Consensus 538 ~~~g~~~G~~v~ea~~~I~~~L~~~-g~l~~~~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~-k~~~~~~l~~v~~~P 615 (1142)
|..+. .|+.+.+ ++.+ |+++ |+....++ +.++.+||| ++-+..+|||++|+..+| +.+...++..|.++|
T Consensus 367 ~~~~~-~~~~~~~-~~g~---linS~~~~gl~~e-~a~~~~~~~--l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~ 438 (814)
T COG0495 367 MPEGT-VGKKVYE-GEGV---LINSGGLDGLDYE-EAKVKIRCG--LVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIH 438 (814)
T ss_pred ecCCC-cccceec-cCce---EeccccccCcchh-HHHHHHHHh--HHHhcCCceEEecccchHHHHHHHHhCCCcceeE
Confidence 87554 7888887 6655 7777 44333445 347889999 666789999999999889 999999999999999
Q ss_pred chhhhhHHHhhhcCCceeeecccCCCc--cCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccc
Q 039882 616 DENRHGFEHTLGWLNQWACSRSFGLGT--RIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEV 693 (1142)
Q Consensus 616 ~~~r~~~~~~i~~l~DW~ISRqr~WG~--PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv 693 (1142)
.+.++-+..-++||+.|.|.|.++.|+ ||||++.|++++|+|+++|+++||+++.+.. ..+..++
T Consensus 439 ~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~s-------------swy~~r~ 505 (814)
T COG0495 439 CEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDS-------------SWYYLRF 505 (814)
T ss_pred cccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhccc-------------ccccHhh
Confidence 999999999999999999999999999 9999999999999999999999999998763 1456788
Q ss_pred eEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcE-----EEEeeEEe
Q 039882 694 WEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRG-----FRCNGHIM 768 (1142)
Q Consensus 694 ~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~-----v~~hG~vl 768 (1142)
+|++|+. . +..++++|+||||+|+|++|+|++.+||+|++|+|.+|++.+.||+. ++++|||+
T Consensus 506 ~d~~~~~-~-----------~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl 573 (814)
T COG0495 506 FDPIFLG-E-----------LPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVL 573 (814)
T ss_pred cChhcCc-c-----------chhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEE
Confidence 8888874 0 12357899999999999999999999999999999999999988877 99999999
Q ss_pred e-cCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 039882 769 L-NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPS 847 (1142)
Q Consensus 769 ~-~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~ 847 (1142)
. +|+|||||+||+|+|+++|++||||++|+|++++++..+|++|+++.++...+.|.++.+++.+...........+.
T Consensus 574 ~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~- 652 (814)
T COG0495 574 GEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQ- 652 (814)
T ss_pred ecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccccccchh-
Confidence 7 89999999999999999999999999999999999999999999999988777777766666665432101111111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHH
Q 039882 848 TYADRVFENEINIAVEMTDQHYKN-YMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAE 926 (1142)
Q Consensus 848 ~~~D~~il~~l~~~i~~v~~~ye~-~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aE 926 (1142)
...|+|+++++.+. +++.++. +.|+.|+.. +|+|.+...+|...... ...++..+++.+++||+||+||+||
T Consensus 653 ~~~~~~~~h~~~~~---v~~~~e~~~~~nt~i~~-~m~l~N~l~~~~~~~~~---~~~~l~~~l~~~v~lLaP~aPH~aE 725 (814)
T COG0495 653 GKEDRWLLHRTIKK---VTEDFEARQTFNTAIAA-LMELLNALRKYLRRTEG---DRKVLREALETWVRLLAPFAPHIAE 725 (814)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHhcccccHHHH
Confidence 15788887766554 5555555 777777755 99999999999876543 2268899999999999999999999
Q ss_pred HHHHHhhcCCCCeEeccCCCCCC
Q 039882 927 YVWRVILKKDGFAVKAGWPTYGT 949 (1142)
Q Consensus 927 eiw~~L~~~~~sv~~~~wP~~~~ 949 (1142)
|+|+.| |..++|+.++||++++
T Consensus 726 ElW~~l-g~~~~v~~~~wP~~de 747 (814)
T COG0495 726 ELWEEL-GNEGFVSNAPWPEPDE 747 (814)
T ss_pred HHHHHh-cCCCceeeCCCCCCCh
Confidence 999988 5456999999999875
No 28
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-118 Score=1126.35 Aligned_cols=668 Identities=22% Similarity=0.346 Sum_probs=508.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 64 ARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 64 ~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
.+++++.++|++||++|+++++|+...+. +++|++++|||||||.|||||++|++++|+++||+||+|++|+|
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~~-------~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~ 74 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTEDS-------SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLH 74 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCccC-------CCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccc
Confidence 47899999999999999999999986543 24799999999999999999999999999999999999999999
Q ss_pred cccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHH
Q 039882 144 PFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMR 223 (1142)
Q Consensus 144 ~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~ 223 (1142)
++||||||||||.+|++ .|++
T Consensus 75 ~~G~D~~Glpie~~a~~-------~g~~---------------------------------------------------- 95 (805)
T PRK00390 75 PMGWDAFGLPAENAAIK-------TGTH---------------------------------------------------- 95 (805)
T ss_pred cCccCCCCCHHHHHHHH-------cCCC----------------------------------------------------
Confidence 99999999999998853 2431
Q ss_pred hcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccC
Q 039882 224 SFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSP 303 (1142)
Q Consensus 224 ~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p 303 (1142)
|.+|++.+...|+++|++||+++||+++|.|+| |.|.++++|+|.+|+++|+||+|.++|+|||
T Consensus 96 --------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp 159 (805)
T PRK00390 96 --------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCD--PEYYKWTQWIFLKLYEKGLAYRKESPVNWCP 159 (805)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCC--HHHHHHHHHHHHHHHHCCCEEEecCEEEecC
Confidence 345667777889999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCccccccccccCCcc-ccccceeE-----eeeccC-------------CCCCCcc-----------------cCCCCc
Q 039882 304 LDDQPCADHDRASGEGV-QPQDYTLI-----KMEVLQ-------------PFPAKFG-----------------PLEGKK 347 (1142)
Q Consensus 304 ~~~t~lad~ev~~~e~~-~~~~y~~i-----kf~~~~-------------~~~~~~~-----------------~l~~~~ 347 (1142)
.|+|+||++|++.+.+. +...+... -|++.+ .||+.++ .+.+.+
T Consensus 160 ~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~ 239 (805)
T PRK00390 160 VDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSD 239 (805)
T ss_pred CcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCC
Confidence 99999999999865321 11111100 011110 1322111 122334
Q ss_pred eEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccc-cCCCCCeeeEeEecceecCCeEecC
Q 039882 348 VYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFS-RIPKKPTCLVELTGYDLIGLPLKSP 426 (1142)
Q Consensus 348 ~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~-~~~~~~~~~~~~~G~~L~G~~~~~P 426 (1142)
.+++||||||||||||+||||||+++|+.+..++ +.++.++..+... .......++.+++|. |+|++|.||
T Consensus 240 ~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P 311 (805)
T PRK00390 240 EKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ-------NPAVAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHP 311 (805)
T ss_pred CEEEEEeCCchHhhcceEEEECCCChhHHhhhcc-------hHHHHHHHHHHhhhcchhhhhcccceeee-ecCcEEECC
Confidence 6899999999999999999999999998876432 1223332221100 011223455789996 999999999
Q ss_pred CCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhh
Q 039882 427 LSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERV 506 (1142)
Q Consensus 427 l~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~ 506 (1142)
++ ++.+||+.++||++++|||+||+|||||++||+++ ++|||+ ++++|+.+ |...
T Consensus 312 ~~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~----------~~~~L~--------~~~~i~~~--g~~~---- 366 (805)
T PRK00390 312 LT-GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFA----------KKYGLP--------IKPVIEPG--DGDE---- 366 (805)
T ss_pred CC-CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHH----------HHcCCC--------ceeeeCCC--Cccc----
Confidence 97 46899999999999999999999999999999876 679974 45666543 3200
Q ss_pred hhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEEE
Q 039882 507 CTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVV 585 (1142)
Q Consensus 507 ~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i~ 585 (1142)
++++.+|.+ +|+|. .|.|+|+.+.+|+++|++.|++.|++. .++.+
T Consensus 367 ----------------~~~~~~~~~---~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~--------------~~v~~ 413 (805)
T PRK00390 367 ----------------DISEEAYTG---DGVLINSGELDGLDSEEAKEAIIAWLEEKGLGK--------------RKVNY 413 (805)
T ss_pred ----------------ccccccccC---CeEEEeccccCCCCHHHHHHHHHHHHHHcCCCC--------------CceEE
Confidence 122334443 56664 589999999999999999999999842 11111
Q ss_pred cccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehh
Q 039882 586 ALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYY 665 (1142)
Q Consensus 586 ~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ 665 (1142)
.++||||||||+||+|||. |+|++++ .+...-.
T Consensus 414 ------------------------------------------~l~DW~ISRQR~WG~PIPi---~~~~~~g--~~~v~~~ 446 (805)
T PRK00390 414 ------------------------------------------RLRDWGISRQRYWGEPIPI---IHCEDCG--IVPVPEE 446 (805)
T ss_pred ------------------------------------------ECCCccccccccCCCceeE---EEECCCC--ceeCchH
Confidence 2679999999999999993 3343322 1111000
Q ss_pred hh-hhhc---c-c----------Cccc--CCCCCC-CCCCCCCccceEEEeeCCCCCCC-CCCChhhHh-hhHHhhhhcC
Q 039882 666 TV-AHML---H-K----------GDMY--GSTTGS-IEPGQMTDEVWEFIFCGGPYPES-SNIPSSILN-RMKQEFEYWY 725 (1142)
Q Consensus 666 ti-~~~l---~-~----------~~~~--g~~~~~-~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~-~~~~ef~~~~ 725 (1142)
.. .++. . . ..+. ...||. ++ ..+||||+||||+ |++. .++|...-. -.+++|++||
T Consensus 447 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~ 522 (805)
T PRK00390 447 DLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPAR---RETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWL 522 (805)
T ss_pred hhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCce---eCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcC
Confidence 00 0000 0 0 0000 011221 22 2579999999996 5443 233321000 0157899999
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcC------CCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhh
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQ------RHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFS 799 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~------~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~ 799 (1142)
|+|+|++|+||+.+||.|+++++.++++. .|| ++|++|||| |||||+||+|+|.++|++||||++|||
T Consensus 523 P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pf-k~v~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~ 596 (805)
T PRK00390 523 PVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPF-KKLLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLF 596 (805)
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hhheecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHH
Confidence 99999999999999999999999888854 355 999999999 999999999999999999999999999
Q ss_pred hhccCCCCCCccchHHHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHH
Q 039882 800 LADAGDGVDDANFVFDTANT---GILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFRE 876 (1142)
Q Consensus 800 la~~~~~~~D~~fs~~~~~~---~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~ 876 (1142)
+++++++.+|++|+++.++. ++++++|++++..... ..+. ... ..+|+|+++++++++++++++|++|+|++
T Consensus 597 l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~---~~~~-~~~-~~~D~~il~~l~~~i~~v~~~~e~~~f~~ 671 (805)
T PRK00390 597 EMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEA---GALD-VAA-LSEDKELRRKLHKTIKKVTEDIERLRFNT 671 (805)
T ss_pred HHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcc---cccC-ccc-ChhhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988899999999997764 5777888777632221 1121 122 36899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCCC
Q 039882 877 ALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYG 948 (1142)
Q Consensus 877 a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~~ 948 (1142)
|++. +|+|.+..+.|+. ..++.+++.+++.+++||||||||+|||||+.| +..+||+.++||+++
T Consensus 672 ai~~-l~~f~n~lsk~~~-----~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L-~~~~sv~~~~wP~~~ 736 (805)
T PRK00390 672 AIAA-LMELVNALYKAED-----EQDKAVLREALEILVRLLAPFAPHLAEELWEKL-GHEGSIANAPWPTAD 736 (805)
T ss_pred HHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc-CCCCeeEecCCCCCC
Confidence 9976 7888877777652 245678999999999999999999999999997 556799999999865
No 29
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-90 Score=783.37 Aligned_cols=653 Identities=21% Similarity=0.299 Sum_probs=463.1
Q ss_pred ChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccC
Q 039882 68 RLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGF 147 (1142)
Q Consensus 68 ~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~ 147 (1142)
....+|+.|+++|.+.-.|..+.+.. ++| ||++++|||+|.|||||.+.||+.|+++||+||+||||++||||
T Consensus 31 ~~~~iEk~W~~~~~~~~~~~~~~d~s------k~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGW 103 (876)
T KOG0435|consen 31 AIAMIEKHWKQYLKDGFPFSKDSDKS------KKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGW 103 (876)
T ss_pred hHHHHHHHHHHHHhcCCccccccccC------CCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcc
Confidence 33479999999999887776533332 577 78889999999999999999999999999999999999999999
Q ss_pred CccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCC
Q 039882 148 HCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGL 227 (1142)
Q Consensus 148 D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i 227 (1142)
|.+|||.|++|. +.|+.
T Consensus 104 DaFGLPAENAAi-------ergv~-------------------------------------------------------- 120 (876)
T KOG0435|consen 104 DAFGLPAENAAI-------ERGVH-------------------------------------------------------- 120 (876)
T ss_pred cccCCchhhHHH-------hcCCC--------------------------------------------------------
Confidence 999999999884 23543
Q ss_pred ChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCc
Q 039882 228 SDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQ 307 (1142)
Q Consensus 228 ~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t 307 (1142)
|..|+...+..|++||++||+++||+|+..||+ |+|++|+||+|.+|+++||.|+.+.+|+|||.++|
T Consensus 121 ----------P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~--PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~T 188 (876)
T KOG0435|consen 121 ----------PASWTINNIAKMKQQLKSLGISFDWDREISTCE--PDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKT 188 (876)
T ss_pred ----------chhhhHHHHHHHHHHHHHcCcccccccccccCC--cchhHHHHHHHHHHHHhhhhhccccccccCcccce
Confidence 456666666778999999999999999999998 99999999999999999999999999999999999
Q ss_pred ccccccc-ccCCc------c----ccccceeE---------eeeccCCCCCCccc------------------CC--CCc
Q 039882 308 PCADHDR-ASGEG------V----QPQDYTLI---------KMEVLQPFPAKFGP------------------LE--GKK 347 (1142)
Q Consensus 308 ~lad~ev-~~~e~------~----~~~~y~~i---------kf~~~~~~~~~~~~------------------l~--~~~ 347 (1142)
+||+++| +.|.- | -.||+..+ .++.+..|++ ++. +. +.+
T Consensus 189 VLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~d 267 (876)
T KOG0435|consen 189 VLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGSND 267 (876)
T ss_pred eecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-HHHHHHhhcccccceEEEEEeccCCCCC
Confidence 9999999 33321 2 23555332 1111212555 211 12 234
Q ss_pred eEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCC
Q 039882 348 VYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPL 427 (1142)
Q Consensus 348 ~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl 427 (1142)
..|.++|||||||+|.+.+++.|++..+.... ...+-++. ..+. . +|-. .+..+.||+
T Consensus 268 e~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~----------~lkefl~~-------~~l~--~--Kg~~-lp~~A~Np~ 325 (876)
T KOG0435|consen 268 EILTVYTTRPETLFGASFLVLAPSHSLLDKDS----------SLKEFLSK-------SDLP--Q--KGVQ-LPCQAKNPV 325 (876)
T ss_pred ceEEEEecCchhhccceEEEEcCCchhhhhhc----------hHHHhhhh-------hhcc--c--cCcc-cceeeccCC
Confidence 78999999999999999999999986654332 01111110 0000 1 3444 468899999
Q ss_pred CCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecC--CCCCCchhhh
Q 039882 428 SFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINI--PEFGDKSAER 505 (1142)
Q Consensus 428 ~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~--~~~G~~~a~~ 505 (1142)
+ ++.+||+.+++|....|||+||.+|+|+..|++.. ++-|+. |+ .+|.. +++|+.
T Consensus 326 t-g~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela----------~~~~~~--~~------~~~~~~f~~~~K~---- 382 (876)
T KOG0435|consen 326 T-GRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELA----------QKIGIK--WI------ICIEVIFTNFGKK---- 382 (876)
T ss_pred C-CceeeEEEechhccCCCcceeeeccCcccchhHHH----------hcccce--eE------EEEeeeecchhhh----
Confidence 8 57899999999999999999999999999999754 554432 21 22221 122210
Q ss_pred hhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCC-cchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEE
Q 039882 506 VCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAG-KKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECV 584 (1142)
Q Consensus 506 ~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G-~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i 584 (1142)
. ..+.+.| +..++|..+|.+.+.+.|+.-. +.
T Consensus 383 ----------------------~----------~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~-------~v-------- 415 (876)
T KOG0435|consen 383 ----------------------N----------EQKAFTNLDIRQNAALKLFQFAERKGVGGY-------VV-------- 415 (876)
T ss_pred ----------------------h----------ccccccchhHHHHHHHHHHHHHHhcCCCcc-------ee--------
Confidence 0 1234566 3346688899999988887641 10
Q ss_pred EcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeec----cCCCcce
Q 039882 585 VALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVE----SLSDSTI 660 (1142)
Q Consensus 585 ~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~ie----sl~d~~i 660 (1142)
+ ..|+||.||||||||||||.-.+-.|+ ++++..+
T Consensus 416 ---------s--------------------------------~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV 454 (876)
T KOG0435|consen 416 ---------S--------------------------------YKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPV 454 (876)
T ss_pred ---------c--------------------------------chhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCc
Confidence 0 127899999999999999951111111 1122211
Q ss_pred eeehhhhhhhcccC----------cccCCCCCCCCCCCCCccceEEEeeCCCCCCC---CCCChhhHhhhHHhhhhcCCc
Q 039882 661 YMAYYTVAHMLHKG----------DMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES---SNIPSSILNRMKQEFEYWYPF 727 (1142)
Q Consensus 661 y~~~~ti~~~l~~~----------~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~---~~~~~~~l~~~~~ef~~~~P~ 727 (1142)
-.. .++.+-.++ ....+.||+ |.....|+||+|+||+-+++. ..-+++..+ +.--.+|+|+
T Consensus 455 ~LP--~l~~~~~kG~Pls~~~e~vn~~cP~cg~--pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d--~a~a~k~MPV 528 (876)
T KOG0435|consen 455 TLP--ELNDFTPKGPPLSKADEWVNVDCPRCGE--PAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFD--KAKAKKNMPV 528 (876)
T ss_pred ccc--cccccCCCCCcccchhhheeccCccCCC--cccccccccchhhccceeeEeecCCCCcccccc--hhhhhccCce
Confidence 110 001110110 011122332 445568999999999765432 111111111 2234789999
Q ss_pred ceEEeecccchhhHHHHHHHHHHHhcCC------CCCcEEEEeeEEee-------cC-----------------------
Q 039882 728 DLRVSGKDLIQNHLTFCIYNHTAIMSQR------HWPRGFRCNGHIML-------NS----------------------- 771 (1142)
Q Consensus 728 Dl~~~G~D~ir~hl~~~l~~~~al~~~~------~~Pk~v~~hG~vl~-------~G----------------------- 771 (1142)
|+|++|+++.-.||+|+.|++.++.+.+ || +.++++|+|.. .|
T Consensus 529 DvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF-~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~ 607 (876)
T KOG0435|consen 529 DVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPF-TKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKND 607 (876)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcH-HHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCC
Confidence 9999999999999999999999998765 44 88888888762 23
Q ss_pred --------ccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHH---HHHHHHHHHHHHHHHHHHhhhcc
Q 039882 772 --------EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTA---NTGILRLTKEIAWMEEVLAVESS 840 (1142)
Q Consensus 772 --------~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~---~~~~~kl~n~~~~~~~~~~~~~~ 840 (1142)
+|||||++|+|+|.+++.+||+|++|++++.++++.++++|++..+ .++..|+|++..-+.+.-.. ..
T Consensus 608 ~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~-g~ 686 (876)
T KOG0435|consen 608 KEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDD-GK 686 (876)
T ss_pred CcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 6999999999999999999999999999999999999999998765 45677788776544432111 11
Q ss_pred CC----CCCCCChhhHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHH
Q 039882 841 LR----TGPPSTYADRVFENEINIAVEMTDQHYK-NYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTR 915 (1142)
Q Consensus 841 ~~----~~~~~~~~D~~il~~l~~~i~~v~~~ye-~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~ 915 (1142)
.. ..+.....++-+.+..|.++++|+++|+ .+.++.|+.. ++.|.+....-. +....+.......|..++.
T Consensus 687 ~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~---k~~~~h~~~~~~al~~lv~ 762 (876)
T KOG0435|consen 687 AKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD-MMGLTNALKKAL---KIVLVHSPEFERALEALVI 762 (876)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhh---hhhhhcChHHHHHHHHHHH
Confidence 11 1111234567899999999999999998 5669999976 666665443211 1111222345678999999
Q ss_pred HhhchhhHHHHHHHHHhhcCCCCe-EeccCCCCCC
Q 039882 916 LITPICPHYAEYVWRVILKKDGFA-VKAGWPTYGT 949 (1142)
Q Consensus 916 lLaPi~P~~aEeiw~~L~~~~~sv-~~~~wP~~~~ 949 (1142)
||+|++||+|+|+|+.| +...+. ....||++++
T Consensus 763 mlaP~aPh~asE~Ws~l-~~~~~~~~~~~WP~vd~ 796 (876)
T KOG0435|consen 763 MLAPFAPHVASELWSAL-ANDLSWVSDVKWPEVDP 796 (876)
T ss_pred HHhccCchhHHHHHHHH-hccccchhccCCccCCh
Confidence 99999999999999987 544444 2235998764
No 30
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-78 Score=740.35 Aligned_cols=493 Identities=20% Similarity=0.252 Sum_probs=382.8
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhh-hHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSF-SKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~-~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
++|+|+.||||+||.|||||++++ +++|+++||+||+|++|+|++||||||+||+.+|++ .|.+
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-------~g~~-------- 67 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-------EGVT-------- 67 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-------cCCC--------
Confidence 579999999999999999999998 999999999999999999999999999999999864 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+|++.+.+.+++++++||++
T Consensus 68 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~l~i~ 89 (556)
T PRK12268 68 ----------------------------------------------------------PQELADKYHEEHKEDFKKLGIS 89 (556)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCc
Confidence 3345566667889999999997
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
.|+ .+.|++ |.|.+.++++|.+|+++|+||++.++|+|||.|+|.|++..+.
T Consensus 90 ~d~--~~~t~~--~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~------------------------ 141 (556)
T PRK12268 90 YDL--FTRTTS--PNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE------------------------ 141 (556)
T ss_pred CCC--CcCCCC--HHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee------------------------
Confidence 664 678877 9999999999999999999999999999999999999874211
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
++.|. |.+ +
T Consensus 142 --------------g~cp~----c~~-----~------------------------------------------------ 150 (556)
T PRK12268 142 --------------GTCPY----CGY-----E------------------------------------------------ 150 (556)
T ss_pred --------------ccCCC----CCC-----c------------------------------------------------
Confidence 11110 000 0
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
+.+|
T Consensus 151 ----------------------------------------------------------------------------~~~G 154 (556)
T PRK12268 151 ----------------------------------------------------------------------------GARG 154 (556)
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0001
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+.+. .+|.+ . + ..+...|+|+||
T Consensus 155 ~~ce-----------------------------------~cg~~----~-~-----------------~~~l~~p~~~~~ 177 (556)
T PRK12268 155 DQCD-----------------------------------NCGAL----L-D-----------------PTDLINPRSKIS 177 (556)
T ss_pred chhh-----------------------------------hcccc----C-C-----------------hHHhcCCccccC
Confidence 1000 00000 0 0 001113789999
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhh-cCCceeeecccCCCccCCCCCceeeccCCCc
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLG-WLNQWACSRSFGLGTRIPWDPQFLVESLSDS 658 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~-~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~ 658 (1142)
|++++++.++|||++++ +++++++++++++.++|+..++++.+||+ +++||||||||+|||||||++ .+++
T Consensus 178 ~~~~e~~~~~qwF~~l~--~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~------~~~~ 249 (556)
T PRK12268 178 GSTPEFRETEHFFLDLP--AFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPG------FEGK 249 (556)
T ss_pred CCcCeEEecceEEEEhH--HHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCC------CCCc
Confidence 99999999999999995 79999999999999999999999999999 999999999999999999742 3456
Q ss_pred ceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcC----CcceEEeec
Q 039882 659 TIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWY----PFDLRVSGK 734 (1142)
Q Consensus 659 ~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~----P~Dl~~~G~ 734 (1142)
++|+|+++...++.... .|+++ .+ ...+|..|| |.+++++|+
T Consensus 250 ~iyvW~da~~~y~~~~~--------------------~~~~~------~g--------~~~~~~~~w~ds~~~~~~~~G~ 295 (556)
T PRK12268 250 VFYVWFDAVIGYISASK--------------------EWAER------TG--------DPEAWKEFWLDPETKSYYFIGK 295 (556)
T ss_pred EEEEeehHhhHHHHHHH--------------------HHHHh------cC--------CchHHHHHhCCCCCeEEEEEee
Confidence 77777665544332100 00000 00 011233344 668999999
Q ss_pred ccchhhHHHHHHHHHHHhcC---CCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCcc
Q 039882 735 DLIQNHLTFCIYNHTAIMSQ---RHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDAN 811 (1142)
Q Consensus 735 D~ir~hl~~~l~~~~al~~~---~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~ 811 (1142)
|+++|| ++++++++.+. .++|+.+++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.++..+|++
T Consensus 296 D~~~Fh---~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~ 372 (556)
T PRK12268 296 DNIPFH---SIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTD 372 (556)
T ss_pred ccCcch---HHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCC
Confidence 999999 55566666544 468899999999999999999999999999999999999999999999988899999
Q ss_pred chHHHHH-----HHHHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 039882 812 FVFDTAN-----TGILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYD 884 (1142)
Q Consensus 812 fs~~~~~-----~~~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~ 884 (1142)
|+++.+. .++++++|+++++...+... + .++.+.. ...|+|++++++++++.++++|++|+|+.|++. +++
T Consensus 373 f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~-~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~-l~~ 450 (556)
T PRK12268 373 FTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGEL-GDEDRELIAEAEALFKEVGELLEAGEFKKALEE-IME 450 (556)
T ss_pred CCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcC-CcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH
Confidence 9998764 24567888877766655431 1 1221222 478999999999999999999999999999988 678
Q ss_pred HHhhhHHHHHhcCCccc-------hH---HHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCC
Q 039882 885 LQAARDEYRLSCGAGGL-------NR---DLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTY 947 (1142)
Q Consensus 885 l~~~~~~Y~~~~~~~~~-------~~---~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~ 947 (1142)
|.+.+|+|++..++|.. .. .++..+++.++++|+|||||+|||||+.| |. +++....||..
T Consensus 451 ~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~L-g~-~~~~~~~w~~~ 521 (556)
T PRK12268 451 LAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEML-GG-ENIEKLTWESL 521 (556)
T ss_pred HHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHh-CC-CCCcccchhhh
Confidence 99999999998877531 12 24456889999999999999999999997 54 46777788753
No 31
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.2e-76 Score=685.05 Aligned_cols=371 Identities=27% Similarity=0.415 Sum_probs=308.0
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEK 180 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~ 180 (1142)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||..|++. .+..
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~------~~~~--------- 65 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKK------LGIE--------- 65 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHH------hccc---------
Confidence 5899999999999999999999999999999999999999999999999999999999862 1211
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccccc
Q 039882 181 EESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGC 260 (1142)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~ 260 (1142)
+++...+++++|... |.+|++.+.+.++++|++||+++
T Consensus 66 ---------~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~lgi~~ 103 (382)
T cd00817 66 ---------GKTRHDLGREEFLEK---------------------------------CWEWKEESGGKIREQLKRLGASV 103 (382)
T ss_pred ---------ccchhcCCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhCcee
Confidence 001112333344333 45677777888999999999999
Q ss_pred ccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCc
Q 039882 261 DWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKF 340 (1142)
Q Consensus 261 DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~ 340 (1142)
||++.|.|++ |.|.++|+|+|.+|+++|+||+|.++|+|||.|+|+|+++|+
T Consensus 104 Dw~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev-------------------------- 155 (382)
T cd00817 104 DWSREYFTMD--PGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV-------------------------- 155 (382)
T ss_pred ecCCCcCCCC--HHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh--------------------------
Confidence 9999999988 999999999999999999999999999999999987654210
Q ss_pred ccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecC
Q 039882 341 GPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIG 420 (1142)
Q Consensus 341 ~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G 420 (1142)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCC
Q 039882 421 LPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGD 500 (1142)
Q Consensus 421 ~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~ 500 (1142)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCC
Q 039882 501 KSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSG 580 (1142)
Q Consensus 501 ~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg 580 (1142)
|+|||
T Consensus 156 ---------------------------------------------------------------------------c~~cg 160 (382)
T cd00817 156 ---------------------------------------------------------------------------CSRSG 160 (382)
T ss_pred ---------------------------------------------------------------------------cccCC
Confidence 46788
Q ss_pred CeEEEcccCccceecCchHHHHHHHHHHhc--CceeCchhhhhHHHhhhcCCceeeecccCCCccCCC----CC-ceeec
Q 039882 581 DECVVALTDQWYITYGEEEWKRLATECLNS--MNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPW----DP-QFLVE 653 (1142)
Q Consensus 581 ~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~--v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~----d~-~~~ie 653 (1142)
+||+++.++|||++++ .+++++++.+++ ++|+|+..++++.+||++++||||||||.||+|||+ ++ ..+++
T Consensus 161 ~~~~~~~~~qwf~~l~--~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~ 238 (382)
T cd00817 161 DVIEPLLKPQWFVKVK--DLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVA 238 (382)
T ss_pred CeEEEEecCeeEEehH--HHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEec
Confidence 8999999999999996 799999999987 999999999999999999999999999999999994 21 12333
Q ss_pred cCCCcceeeehhhhhhhcccCcccCCCCC--CCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceE
Q 039882 654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLR 730 (1142)
Q Consensus 654 sl~d~~iy~~~~ti~~~l~~~~~~g~~~~--~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~ 730 (1142)
+..+..+.++. ... +..|+ .+++ .++|+||||||++++.+ .+++.+ .++|++|||+|+|
T Consensus 239 ~~~~~~~~~~~---------~~~-~~~~~~~~~~~---~~~v~dvWfds~~~~~~~~~~~~~-----~~~~~~~~p~d~~ 300 (382)
T cd00817 239 REEDEAIDKAA---------PEA-CVPCGGEELKQ---DEDVLDTWFSSSLWPFSTLGWPEE-----TKDLKKFYPTSLL 300 (382)
T ss_pred chhHHHHHHhc---------ccc-ccCCCccCeeE---CCceeeeeecCCCcHHHHhCCCCc-----chhHhhcCCCCee
Confidence 33332222211 011 11122 1333 47999999999998865 456543 2568999999999
Q ss_pred EeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCC
Q 039882 731 VSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDD 809 (1142)
Q Consensus 731 ~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D 809 (1142)
++|+||+++|+.+.++.+.++.+..|+ +.+++||||+ .+|+|||||+||+|+|.+++++||+|++|||+++.++.++|
T Consensus 301 ~~G~D~~~~h~~~~l~~~~~~~g~~p~-~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D 379 (382)
T cd00817 301 VTGHDIIFFWVARMIMRGLKLTGKLPF-KEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRD 379 (382)
T ss_pred eeecCcCchHHHHHHHHHHHhhCCCch-HHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCC
Confidence 999999999999999988888876665 9999999999 79999999999999999999999999999999999889999
Q ss_pred ccc
Q 039882 810 ANF 812 (1142)
Q Consensus 810 ~~f 812 (1142)
.+|
T Consensus 380 ~~f 382 (382)
T cd00817 380 INL 382 (382)
T ss_pred CCC
Confidence 886
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=9e-74 Score=697.87 Aligned_cols=473 Identities=22% Similarity=0.278 Sum_probs=378.6
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccC
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEE 182 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~ 182 (1142)
|+|++||||+||.|||||+++++.+|+++||+||+|++|+|++|+|+||+||+.+|++ .|++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-------~g~~----------- 62 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-------EGLT----------- 62 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-------cCCC-----------
Confidence 6899999999999999999999999999999999999999999999999999998864 2432
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccccccc
Q 039882 183 SPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDW 262 (1142)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW 262 (1142)
|.++++.+.+.+++++++||+++|+
T Consensus 63 -------------------------------------------------------~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 63 -------------------------------------------------------PKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 2344555567789999999998875
Q ss_pred ccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCccc
Q 039882 263 RRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGP 342 (1142)
Q Consensus 263 ~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~ 342 (1142)
.+.|++ +.|...++++|.+|+++|+||++.++|+|||.|+|.|+|.++..+
T Consensus 88 --~~~t~~--~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~------------------------- 138 (530)
T TIGR00398 88 --FIRTTD--EEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGT------------------------- 138 (530)
T ss_pred --CccCCC--HHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCC-------------------------
Confidence 456776 889999999999999999999999999999999999988532110
Q ss_pred CCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCe
Q 039882 343 LEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLP 422 (1142)
Q Consensus 343 l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~ 422 (1142)
T Consensus 139 -------------------------------------------------------------------------------- 138 (530)
T TIGR00398 139 -------------------------------------------------------------------------------- 138 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCch
Q 039882 423 LKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKS 502 (1142)
Q Consensus 423 ~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~ 502 (1142)
||.++..|. +|+.|
T Consensus 139 ------------------------------cp~c~~~~~------------------------------------~g~~c 152 (530)
T TIGR00398 139 ------------------------------CPKCGSEDA------------------------------------RGDHC 152 (530)
T ss_pred ------------------------------CCCCCCccc------------------------------------ccchh
Confidence 000000000 01000
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCe
Q 039882 503 AERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDE 582 (1142)
Q Consensus 503 a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~ 582 (1142)
. .+|.+ .+ -.+...|+|+|||+|
T Consensus 153 e-----------------------------------~cg~~-----~~-----------------~~~l~~p~~~~~~~~ 175 (530)
T TIGR00398 153 E-----------------------------------VCGRH-----LE-----------------PTELINPRCKICGAK 175 (530)
T ss_pred h-----------------------------------hcccc-----CC-----------------HHHhcCCccccCCCc
Confidence 0 00100 00 001124889999999
Q ss_pred EEEcccCccceecCchHHHHHHHHHHhc---CceeCchhhhhHHHhhhc-CCceeeecccC-CCccCCCCCceeeccCCC
Q 039882 583 CVVALTDQWYITYGEEEWKRLATECLNS---MNLYHDENRHGFEHTLGW-LNQWACSRSFG-LGTRIPWDPQFLVESLSD 657 (1142)
Q Consensus 583 ~i~~~~~QWFi~~~~~~~k~~~~~~l~~---v~~~P~~~r~~~~~~i~~-l~DW~ISRqr~-WG~PIP~d~~~~iesl~d 657 (1142)
++++.++|||++++ .+++.+++.+++ ..+.|+.+++.+.+|++. ++|||||||+. ||+|||++
T Consensus 176 ~e~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------- 243 (530)
T TIGR00398 176 PELRDSEHYFFRLS--AFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------- 243 (530)
T ss_pred ceEEecceEEEEhH--HHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------
Confidence 99999999999995 799999999984 666799999999999987 99999999999 99999942
Q ss_pred cceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcc-----eEE
Q 039882 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFD-----LRV 731 (1142)
Q Consensus 658 ~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~D-----l~~ 731 (1142)
...|+|+|||+...+.+ .+++.. ...+|+.|||.| +++
T Consensus 244 --------------------------------~~~~~yvW~da~~~y~~~~~~~~~----~~~~~~~~w~~~~~~~~v~~ 287 (530)
T TIGR00398 244 --------------------------------PNKVVYVWFDALIGYISSLGILSG----DTEDWKKWWNNDEDAELIHF 287 (530)
T ss_pred --------------------------------CCcEEEEeecchHHhHhhhccccC----ChhhHHHhCCCCCCceEEEE
Confidence 12478999998766553 223221 124688899999 999
Q ss_pred eecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCc
Q 039882 732 SGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDA 810 (1142)
Q Consensus 732 ~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~ 810 (1142)
.|+||+++| ++++++++.+.+ ++|+++++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.++..+|+
T Consensus 288 ~G~Di~~~h---~~~~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~ 364 (530)
T TIGR00398 288 IGKDIVRFH---TIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDG 364 (530)
T ss_pred EecccchhH---HHHHHHHHHhCCCCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCC
Confidence 999999999 556655555443 6689999999999999999999999999999999999999999999988889999
Q ss_pred cchHHHHHH-----HHHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039882 811 NFVFDTANT-----GILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFY 883 (1142)
Q Consensus 811 ~fs~~~~~~-----~~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~ 883 (1142)
+|+++.+.. .+++++|+++++...+... + .++........|+|++++++++++.++++|++|+|+.|++. ++
T Consensus 365 ~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~-l~ 443 (530)
T TIGR00398 365 DFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALRE-IM 443 (530)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HH
Confidence 999998643 4568899887776655431 1 12222222468999999999999999999999999999988 88
Q ss_pred HHHhhhHHHHHhcCCcc---------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 884 DLQAARDEYRLSCGAGG---------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 884 ~l~~~~~~Y~~~~~~~~---------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
+|...+|+|++.+++|. ....++.+++++++++|+|||||+||+||+.|
T Consensus 444 ~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L 501 (530)
T TIGR00398 444 KLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFL 501 (530)
T ss_pred HHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHh
Confidence 89999999999887752 23468889999999999999999999999988
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-73 Score=708.05 Aligned_cols=448 Identities=19% Similarity=0.251 Sum_probs=374.1
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|++|+|||||.+||||+++++.+|+++||+||+|++|+|+.|+|+||+||+.+|.+ .|.+
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-------~g~~-------- 67 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-------AGKT-------- 67 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-------cCCC--------
Confidence 3689999999999999999999999999999999999999999999999999999988853 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.++++++...++++|++||++
T Consensus 68 ----------------------------------------------------------~~e~~d~~~~~fk~~l~~lgI~ 89 (648)
T PRK12267 68 ----------------------------------------------------------PQEYVDEISAGFKELWKKLDIS 89 (648)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCC
Confidence 3345666667889999999998
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
+|+ .+.|++ +++...++++|.+|+++|+||++...+.|||.|++.|++.+
T Consensus 90 ~D~--f~rTt~--~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~-------------------------- 139 (648)
T PRK12267 90 YDK--FIRTTD--ERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQ-------------------------- 139 (648)
T ss_pred CCC--CeeCCC--HHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHH--------------------------
Confidence 873 566776 88999999999999999999999999999999887654310
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
|+
T Consensus 140 ------------------------------------------------------------------------------l~ 141 (648)
T PRK12267 140 ------------------------------------------------------------------------------LV 141 (648)
T ss_pred ------------------------------------------------------------------------------hc
Confidence 00
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+ .++|+||
T Consensus 142 -----------------------------------~-------------------------------------~~~c~~c 149 (648)
T PRK12267 142 -----------------------------------D-------------------------------------GGKCPDC 149 (648)
T ss_pred -----------------------------------c-------------------------------------CCcCCCC
Confidence 0 0347889
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhcC-c-eeCchhhhhHH-Hhhhc-CCceeeeccc-CCCccCCCCCceeecc
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNSM-N-LYHDENRHGFE-HTLGW-LNQWACSRSF-GLGTRIPWDPQFLVES 654 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v-~-~~P~~~r~~~~-~~i~~-l~DW~ISRqr-~WG~PIP~d~~~~ies 654 (1142)
|+|++++.++|||++++ .+++++++.+++. + +.|+..++++. +|++. ++|||||||| .||+|||.+
T Consensus 150 g~~~e~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------- 220 (648)
T PRK12267 150 GREVELVKEESYFFRMS--KYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------- 220 (648)
T ss_pred CCcCeEEecceEEEEcH--HHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------
Confidence 99999999999999996 7999999999853 3 56999999988 99986 9999999997 699999931
Q ss_pred CCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEee
Q 039882 655 LSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSG 733 (1142)
Q Consensus 655 l~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G 733 (1142)
...|+||||||+..+.+ .+++.+. .++|+.|||+|+|++|
T Consensus 221 -----------------------------------~~~v~yVWfDA~~~y~s~~~~~~~~----~~~~~~~wp~~~~~~G 261 (648)
T PRK12267 221 -----------------------------------PKHVVYVWIDALLNYITALGYGSDD----DELFKKFWPADVHLVG 261 (648)
T ss_pred -----------------------------------CCCEEEEcccchHHHHHHcCCCCCC----chHHHhhcccceEEEe
Confidence 13699999999887764 4665421 2468889999999999
Q ss_pred cccchhhHHHHHHHHHHHhcC-CCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 734 KDLIQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 734 ~D~ir~hl~~~l~~~~al~~~-~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
+||++|| ++|+++++.+. .++|++|++|||++.+|+|||||+||+|+|.+++++||+|++||||+++++..+|.+|
T Consensus 262 kDii~fH---~i~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~f 338 (648)
T PRK12267 262 KDILRFH---AIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDF 338 (648)
T ss_pred eeecchh---HHHHHHHHHhCCCCCCcEEEecceEEECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCC
Confidence 9999999 56666666443 3678999999999999999999999999999999999999999999998889999999
Q ss_pred hHHHHH-----HHHHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 039882 813 VFDTAN-----TGILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 885 (1142)
Q Consensus 813 s~~~~~-----~~~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l 885 (1142)
+++.+. .+.++++|+++++...+... + .++........|+|++++++++++++.++|++|+|++|++. +++|
T Consensus 339 s~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~-i~~~ 417 (648)
T PRK12267 339 SPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEE-VWKL 417 (648)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHH
Confidence 999864 25677899887766555431 1 12211122468999999999999999999999999999998 6679
Q ss_pred HhhhHHHHHhcCCccc------------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 886 QAARDEYRLSCGAGGL------------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 886 ~~~~~~Y~~~~~~~~~------------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
...+|+|++..++|.. ...++.++++.++++|+|||||+||+||+.|
T Consensus 418 ~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~L 476 (648)
T PRK12267 418 ISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQL 476 (648)
T ss_pred HHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHc
Confidence 9999999999887631 1235677889999999999999999999987
No 34
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=5.5e-71 Score=668.10 Aligned_cols=451 Identities=18% Similarity=0.247 Sum_probs=359.4
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||+||+||+.+|.+ .|.+
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-------~g~~-------- 132 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-------NGRN-------- 132 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-------cCCC--------
Confidence 6889999999999999999999999999999999999999999999999999999988853 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.++++.+...+++++++||+
T Consensus 133 ----------------------------------------------------------p~e~~~~~~~~~~~~~~~l~I- 153 (616)
T PLN02224 133 ----------------------------------------------------------PPEHCDIISQSYRTLWKDLDI- 153 (616)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHHHHHHcCC-
Confidence 223334444567899999998
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
+|++.+.|++ |.|.+.|+++|.+|+++|+||++.++++|||+|++.+.+.
T Consensus 154 -~~D~f~rTt~--~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~--------------------------- 203 (616)
T PLN02224 154 -AYDKFIRTTD--PKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEK--------------------------- 203 (616)
T ss_pred -CCCcCeeCCC--HHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHH---------------------------
Confidence 5558889988 9999999999999999999999999999999988632110
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
+|+
T Consensus 204 -----------------------------------------------------------------------------~l~ 206 (616)
T PLN02224 204 -----------------------------------------------------------------------------ELL 206 (616)
T ss_pred -----------------------------------------------------------------------------HHc
Confidence 000
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
+ +
T Consensus 207 ~---------~--------------------------------------------------------------------- 208 (616)
T PLN02224 207 E---------N--------------------------------------------------------------------- 208 (616)
T ss_pred C---------C---------------------------------------------------------------------
Confidence 0 0
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+.|..|
T Consensus 209 --------------------------------------------------------------------------~~~~~~ 214 (616)
T PLN02224 209 --------------------------------------------------------------------------NCCPVH 214 (616)
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 012236
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhc-Cc-eeCchhhhhHHHhhhc-CCceeeeccc-CCCccCCCCCceeeccC
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNS-MN-LYHDENRHGFEHTLGW-LNQWACSRSF-GLGTRIPWDPQFLVESL 655 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~-v~-~~P~~~r~~~~~~i~~-l~DW~ISRqr-~WG~PIP~d~~~~iesl 655 (1142)
|.|++++.+++||++++ ++++.+.+.++. -. +.|+..++.+.+||.. |+||||||.+ .||+|+|.+
T Consensus 215 ~~~~~~~~e~~~ff~Ls--~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~-------- 284 (616)
T PLN02224 215 QMPCVARKEDNYFFALS--KYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDD-------- 284 (616)
T ss_pred CCcceEEecceEEEEhH--HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCC--------
Confidence 77888888999999996 699999999963 33 4588888889999874 9999999986 799999942
Q ss_pred CCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeec
Q 039882 656 SDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGK 734 (1142)
Q Consensus 656 ~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~ 734 (1142)
++. |++||||+-..+.+ ++...+. ......|.+|||.|+|+.|+
T Consensus 285 ~~~----------------------------------viYVWfDAl~~Yls~~~~~~~~-~~~~~~~~~~w~~~v~~iGK 329 (616)
T PLN02224 285 DKQ----------------------------------TIYVWFDALLGYISALTEDNKQ-QNLETAVSFGWPASLHLIGK 329 (616)
T ss_pred CCc----------------------------------EEEEehhhHHHHHHHhcccccc-cccchhhccCCCcceEEEee
Confidence 123 55555553322221 1111100 00111256689999999999
Q ss_pred ccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccch
Q 039882 735 DLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV 813 (1142)
Q Consensus 735 D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs 813 (1142)
|+++|| ++++++++.+.+ +||+.|++|||++.+|+|||||+||+|+|.+++++||+|++||||++.++..+|.+|+
T Consensus 330 Dii~fH---~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs 406 (616)
T PLN02224 330 DILRFH---AVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYS 406 (616)
T ss_pred cccccH---HHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCC
Confidence 999999 888888888655 8899999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHhhh-cc-CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 039882 814 FDTAN-----TGILRLTKEIAWMEEVLAVE-SS-LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886 (1142)
Q Consensus 814 ~~~~~-----~~~~kl~n~~~~~~~~~~~~-~~-~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~ 886 (1142)
++.+. .+++.++|+++++...+... +. ++........|.+++++++++++++.++|++|+|++|++. ++++.
T Consensus 407 ~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~-i~el~ 485 (616)
T PLN02224 407 EDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEA-VLEIG 485 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHH
Confidence 99753 25677888888776655432 11 1211111346899999999999999999999999999998 78899
Q ss_pred hhhHHHHHhcCCccc-------------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 887 AARDEYRLSCGAGGL-------------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 887 ~~~~~Y~~~~~~~~~-------------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
+..|+|++.++||.. ...++.++++.+++||+|||||+||+||+.|
T Consensus 486 ~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~L 544 (616)
T PLN02224 486 NAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQL 544 (616)
T ss_pred HHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 999999998887621 1125788899999999999999999999997
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-70 Score=682.58 Aligned_cols=473 Identities=21% Similarity=0.284 Sum_probs=373.8
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEK 180 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~ 180 (1142)
.+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.+|++ .|.+
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-------~g~~--------- 65 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-------EGIT--------- 65 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-------cCCC---------
Confidence 469999999999999999999999999999999999999999999999999999999964 2432
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccccc
Q 039882 181 EESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGC 260 (1142)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~ 260 (1142)
|.+|++++...++++|++||++.
T Consensus 66 ---------------------------------------------------------p~e~~~~~~~~~~~~~~~l~i~~ 88 (673)
T PRK00133 66 ---------------------------------------------------------PEELIARYHAEHKRDFAGFGISF 88 (673)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566677778899999999988
Q ss_pred ccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCc
Q 039882 261 DWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKF 340 (1142)
Q Consensus 261 DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~ 340 (1142)
|+ .+.|++ |.|.+.++++|.+|+++|+||++..+|+|||.|++.|++..+.
T Consensus 89 d~--f~rtt~--~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~------------------------- 139 (673)
T PRK00133 89 DN--YGSTHS--EENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK------------------------- 139 (673)
T ss_pred CC--CccCCc--HHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee-------------------------
Confidence 75 566766 8999999999999999999999999999999999998874321
Q ss_pred ccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecC
Q 039882 341 GPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIG 420 (1142)
Q Consensus 341 ~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G 420 (1142)
| |+|. |. .++
T Consensus 140 ----g---------~cp~----C~----~~d------------------------------------------------- 149 (673)
T PRK00133 140 ----G---------TCPK----CG----AED------------------------------------------------- 149 (673)
T ss_pred ----c---------ccCC----CC----Ccc-------------------------------------------------
Confidence 0 1110 00 000
Q ss_pred CeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCC
Q 039882 421 LPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGD 500 (1142)
Q Consensus 421 ~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~ 500 (1142)
..|+.+-. .|.
T Consensus 150 -----------------------~~g~~ce~----------------------------------------------cg~ 160 (673)
T PRK00133 150 -----------------------QYGDNCEV----------------------------------------------CGA 160 (673)
T ss_pred -----------------------cCCchhhh----------------------------------------------ccc
Confidence 00000000 000
Q ss_pred chhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCC
Q 039882 501 KSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSG 580 (1142)
Q Consensus 501 ~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg 580 (1142)
.+.+. . + ..|+|.+||
T Consensus 161 -----------------------------------------~~~~~-----------~------l------~~~~~~~~g 176 (673)
T PRK00133 161 -----------------------------------------TYSPT-----------E------L------INPKSAISG 176 (673)
T ss_pred -----------------------------------------cCChH-----------h------h------cCCccccCC
Confidence 00000 0 1 136799999
Q ss_pred CeEEEcccCccceecCchHHHHHHHHHHhc-CceeCchhhhhHHHhhh-cCCceeeecccCC-CccCCCCCceeeccCCC
Q 039882 581 DECVVALTDQWYITYGEEEWKRLATECLNS-MNLYHDENRHGFEHTLG-WLNQWACSRSFGL-GTRIPWDPQFLVESLSD 657 (1142)
Q Consensus 581 ~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~-v~~~P~~~r~~~~~~i~-~l~DW~ISRqr~W-G~PIP~d~~~~iesl~d 657 (1142)
++++++.++|||++++ ++++.+++.+++ ..| |+.+++.+.+||+ .++|||||||+.| |+|+|.+
T Consensus 177 ~~~e~~~~~~~f~~l~--~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~---------- 243 (673)
T PRK00133 177 ATPVLKESEHFFFKLP--RFEEFLKEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGA---------- 243 (673)
T ss_pred CcceEEecceEEEEHH--HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCCC----------
Confidence 9999999999999995 799999999865 665 9999999999995 6999999999999 9999931
Q ss_pred cceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-C-CCChhhHhhhHHhhhhcCCcc-----eE
Q 039882 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-S-NIPSSILNRMKQEFEYWYPFD-----LR 730 (1142)
Q Consensus 658 ~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~-~~~~~~l~~~~~ef~~~~P~D-----l~ 730 (1142)
...|+|+|||+-..+.+ + +++... ..+.|+.|||.+ ++
T Consensus 244 --------------------------------~~~~iyVW~dal~~Yl~~~~~~~~~~---~~~~~~~~w~~~~~~~~v~ 288 (673)
T PRK00133 244 --------------------------------PGKVFYVWLDAPIGYISSTKNLCDKR---GGLDWDEYWKKDSDTELYH 288 (673)
T ss_pred --------------------------------CCeEEEEcccchhhhhHHHhhhcccc---cchhHHHhcCCCCCceEEE
Confidence 12467778876544432 1 232210 013477888433 89
Q ss_pred EeecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCC-C
Q 039882 731 VSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGV-D 808 (1142)
Q Consensus 731 ~~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~-~ 808 (1142)
+.|+|+++|| +++|++++.+.+ ++|++|++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.++.+ +
T Consensus 289 ~iGkDi~~fH---~i~wpa~l~a~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~ 365 (673)
T PRK00133 289 FIGKDIIYFH---TLFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETID 365 (673)
T ss_pred EEeecchhHH---HHHHHHHHHhCCCCCCCEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCC
Confidence 9999999999 888888887655 7789999999999999999999999999999999999999999999988888 9
Q ss_pred CccchHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039882 809 DANFVFDTAN-----TGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFY 883 (1142)
Q Consensus 809 D~~fs~~~~~-----~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~ 883 (1142)
|.+|+++.+. .++++++|+++++..++... +.........|+|++++++++++.+.++|++|+|+.|++. ++
T Consensus 366 D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~--~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~-l~ 442 (673)
T PRK00133 366 DLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKR--FDGKLPDALADPELLEEFEAAAEKIAEAYEAREFRKALRE-IM 442 (673)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence 9999998753 35677899888776655421 1111111357999999999999999999999999999988 77
Q ss_pred HHHhhhHHHHHhcCCccc----------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 884 DLQAARDEYRLSCGAGGL----------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 884 ~l~~~~~~Y~~~~~~~~~----------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
+|...+|+|++..++|.. ...++..+++.+++||+|||||+||+||+.|
T Consensus 443 ~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~L 501 (673)
T PRK00133 443 ALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFL 501 (673)
T ss_pred HHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHh
Confidence 899999999999888731 1235567788999999999999999999997
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.9e-71 Score=670.18 Aligned_cols=451 Identities=20% Similarity=0.244 Sum_probs=372.9
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccccc
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~ 181 (1142)
+|+|++||||+||.+||||+++++..|+++||+||+|++|.|++|+|+||.||+..|++ .|.+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-------~g~~---------- 64 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-------AGIS---------- 64 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-------cCCC----------
Confidence 69999999999999999999999999999999999999999999999999999987753 2432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccc
Q 039882 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCD 261 (1142)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~D 261 (1142)
|.++++++...++++|++||+..|
T Consensus 65 --------------------------------------------------------~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 65 --------------------------------------------------------PQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCcC
Confidence 234556666788999999999877
Q ss_pred cccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcc
Q 039882 262 WRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFG 341 (1142)
Q Consensus 262 W~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~ 341 (1142)
+ .+.|++ +++...++++|.+|+++|+||++.++|+|||.|+|.|++.|
T Consensus 89 ~--~~~t~~--~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~---------------------------- 136 (511)
T PRK11893 89 D--FIRTTD--PRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESE---------------------------- 136 (511)
T ss_pred C--ceeCCC--HHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHH----------------------------
Confidence 3 456766 88999999999999999999999999999999998765411
Q ss_pred cCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCC
Q 039882 342 PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGL 421 (1142)
Q Consensus 342 ~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~ 421 (1142)
T Consensus 137 -------------------------------------------------------------------------------- 136 (511)
T PRK11893 137 -------------------------------------------------------------------------------- 136 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCc
Q 039882 422 PLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDK 501 (1142)
Q Consensus 422 ~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~ 501 (1142)
+ + +
T Consensus 137 ------------------------------------------l----------------------------~--~----- 139 (511)
T PRK11893 137 ------------------------------------------L----------------------------I--E----- 139 (511)
T ss_pred ------------------------------------------h----------------------------c--C-----
Confidence 0 0 0
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCC
Q 039882 502 SAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGD 581 (1142)
Q Consensus 502 ~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~ 581 (1142)
+ .|+|||||+
T Consensus 140 ----------------------------------~------------------------------------~p~~~~~~~ 149 (511)
T PRK11893 140 ----------------------------------D------------------------------------GYRCPPTGA 149 (511)
T ss_pred ----------------------------------C------------------------------------CCCCCCCCC
Confidence 0 057999999
Q ss_pred eEEEcccCccceecCchHHHHHHHHHHhc-Cce-eCchhhhhHHHhhh-cCCceeeec-ccCCCccCCCCCceeeccCCC
Q 039882 582 ECVVALTDQWYITYGEEEWKRLATECLNS-MNL-YHDENRHGFEHTLG-WLNQWACSR-SFGLGTRIPWDPQFLVESLSD 657 (1142)
Q Consensus 582 ~~i~~~~~QWFi~~~~~~~k~~~~~~l~~-v~~-~P~~~r~~~~~~i~-~l~DW~ISR-qr~WG~PIP~d~~~~iesl~d 657 (1142)
|++++.++|||++++ .+++++.+.+++ +++ .|+..++++.+|++ +++|||||| |+.||+|||.+
T Consensus 150 ~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~---------- 217 (511)
T PRK11893 150 PVEWVEEESYFFRLS--KYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD---------- 217 (511)
T ss_pred cceEEecCeEEEEcH--HHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC----------
Confidence 999999999999996 699999999986 554 59999999999997 499999999 99999999931
Q ss_pred cceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeeccc
Q 039882 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDL 736 (1142)
Q Consensus 658 ~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ 736 (1142)
..+++|+|||++..+.+ .++|.+. ..|+++|.+|||+|++++|+||
T Consensus 218 --------------------------------~~~~~~vWfda~~~y~s~~~~p~~~-~~~~~~~~~~~~~D~~~~G~D~ 264 (511)
T PRK11893 218 --------------------------------PKHVIYVWFDALTNYLTALGYPDDE-ELLAELFNKYWPADVHLIGKDI 264 (511)
T ss_pred --------------------------------CCceEEEEecCcHHHHhHhcccccc-ccchhHHHhcCCCcceEecccc
Confidence 13588999999887765 3555421 1244578999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHH
Q 039882 737 IQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDT 816 (1142)
Q Consensus 737 ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~ 816 (1142)
+++|+.+.+....++ ..++|+.+++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.++..+|++|+++.
T Consensus 265 ~~~h~~~~~a~~~a~--~~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~ 342 (511)
T PRK11893 265 LRFHAVYWPAFLMAA--GLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREA 342 (511)
T ss_pred cccchhHHHHHHHhC--CCCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHH
Confidence 999977765555444 347889999999999999999999999999999999999999999999998889999999998
Q ss_pred HHH-----HHHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhh
Q 039882 817 ANT-----GILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAAR 889 (1142)
Q Consensus 817 ~~~-----~~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~ 889 (1142)
+.. +.+.++|+++.+...+... + ..+........|+|++++++++++.+.++|++|+|+.|++. +++|....
T Consensus 343 ~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~-l~~l~~~~ 421 (511)
T PRK11893 343 FINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEA-ILALVRAA 421 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHH
Confidence 743 3356777766555544321 1 12211112467999999999999999999999999999988 77888999
Q ss_pred HHHHHhcCCccc----------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 890 DEYRLSCGAGGL----------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 890 ~~Y~~~~~~~~~----------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
|+|++..++|.. ...+++++++.++++|+|||||+||+||+.|
T Consensus 422 n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 474 (511)
T PRK11893 422 NKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQL 474 (511)
T ss_pred HHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHh
Confidence 999988777521 2246788899999999999999999999997
No 37
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.4e-70 Score=682.87 Aligned_cols=476 Identities=18% Similarity=0.208 Sum_probs=374.6
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhh-hhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFS-FSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEA 178 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~-~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~ 178 (1142)
..+|+||+|+|||||.|||||+++ ++.+|+++||+||+|++|+|+.|+|+||+||+.+|++ .|.
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-------~g~-------- 80 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-------ENC-------- 80 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-------cCC--------
Confidence 568999999999999999999997 4668999999999999999999999999999998863 243
Q ss_pred cccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccc
Q 039882 179 EKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGL 258 (1142)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~ 258 (1142)
+|.+|++++...+++++++||+
T Consensus 81 ----------------------------------------------------------~p~e~~d~~~~~~~~~~~~l~i 102 (801)
T PLN02610 81 ----------------------------------------------------------TPKEICDKYHAIHKEVYDWFDI 102 (801)
T ss_pred ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHcCC
Confidence 2556677777888999999998
Q ss_pred ccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCC
Q 039882 259 GCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPA 338 (1142)
Q Consensus 259 ~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~ 338 (1142)
++| +.+.|++ |.|.++++|+|.+|+++|+||+|.++++|||.|+|.|+|..+.. .+|..
T Consensus 103 ~~D--~f~rT~~--~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G---~CP~~-------------- 161 (801)
T PLN02610 103 SFD--KFGRTST--PQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEG---TCPTE-------------- 161 (801)
T ss_pred ccc--cCccCCC--HHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcC---cCCcc--------------
Confidence 766 6667876 99999999999999999999999999999999999998854321 11100
Q ss_pred CcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEeccee
Q 039882 339 KFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDL 418 (1142)
Q Consensus 339 ~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L 418 (1142)
| |. +
T Consensus 162 -----------------------~---C~-----------------------------~--------------------- 165 (801)
T PLN02610 162 -----------------------G---CN-----------------------------Y--------------------- 165 (801)
T ss_pred -----------------------c---cC-----------------------------c---------------------
Confidence 0 00 0
Q ss_pred cCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCC
Q 039882 419 IGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEF 498 (1142)
Q Consensus 419 ~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~ 498 (1142)
+ +.+
T Consensus 166 ----------------------------------------~------------------------------------~a~ 169 (801)
T PLN02610 166 ----------------------------------------D------------------------------------SAR 169 (801)
T ss_pred ----------------------------------------c------------------------------------ccc
Confidence 0 000
Q ss_pred CCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCcccccc
Q 039882 499 GDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSR 578 (1142)
Q Consensus 499 G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~R 578 (1142)
|+.|.. +| ..+.-.+...|+|.+
T Consensus 170 Gd~Ce~-----------------------------------Cg----------------------~~~~p~eLi~p~c~~ 192 (801)
T PLN02610 170 GDQCEK-----------------------------------CG----------------------KLLNPTELIDPKCKV 192 (801)
T ss_pred cchhhh-----------------------------------cc----------------------ccCChhhhcCCcccC
Confidence 110000 00 000001112478999
Q ss_pred CCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhh---HHHhhh-cCCceeeecccCCCccCCCCCceeecc
Q 039882 579 SGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHG---FEHTLG-WLNQWACSRSFGLGTRIPWDPQFLVES 654 (1142)
Q Consensus 579 sg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~---~~~~i~-~l~DW~ISRqr~WG~PIP~d~~~~ies 654 (1142)
||.+++++-++|||++++ .+++.+++.++.-...|.+.++. ..+||+ .|+||||||...||+|+|++.
T Consensus 193 ~g~~~~~~~~~~~ff~Ls--~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~------ 264 (801)
T PLN02610 193 CKNTPRIRDTDHLFLELP--LLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEK------ 264 (801)
T ss_pred CCCcceEEEcceEEEEhH--HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCC------
Confidence 999999999999999996 79999999998644556555553 447874 699999999999999999520
Q ss_pred CCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCC--CCChhhHhhhHHhhhhcCCc--c--
Q 039882 655 LSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESS--NIPSSILNRMKQEFEYWYPF--D-- 728 (1142)
Q Consensus 655 l~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~--~~~~~~l~~~~~ef~~~~P~--D-- 728 (1142)
+...|++||||.-..+.+. ++ .++|+.|||. |
T Consensus 265 ----------------------------------~~~~v~YVWfDAl~~Yis~~~~~--------~~~~~~~W~~~~~~~ 302 (801)
T PLN02610 265 ----------------------------------YKDKVFYVWFDAPIGYVSITACY--------TPEWEKWWKNPENVE 302 (801)
T ss_pred ----------------------------------CCCcEEEEehhhHHHHHHHHhhh--------hhHHHHhcCCcccce
Confidence 0135889999865444321 22 2347778865 7
Q ss_pred -eEEeecccchhhHHHHHHHHHHHhcCC-C--CCcEEEEeeEEeecCccccccCCCcCChHHHHHH-cChhhhhhhhhcc
Q 039882 729 -LRVSGKDLIQNHLTFCIYNHTAIMSQR-H--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADA 803 (1142)
Q Consensus 729 -l~~~G~D~ir~hl~~~l~~~~al~~~~-~--~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~ 803 (1142)
+|+.|+||++|| +++|+++|.+.+ + +|+.|++|||++.+|+|||||+||+|+|.++++. ||+|++||||++.
T Consensus 303 ~~hfiGKDi~~fH---~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~ 379 (801)
T PLN02610 303 LYQFMGKDNVPFH---TVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTN 379 (801)
T ss_pred EEEEEeeecchhH---HHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhc
Confidence 899999999999 999999999866 3 6799999999999999999999999999999996 9999999999999
Q ss_pred CCCCCCccchHHHHHH-----HHHHHHHHHHHHHHHHhh-----hc-cCCCCC--CCChhhHHHHHHHHHHHHHHHHHhh
Q 039882 804 GDGVDDANFVFDTANT-----GILRLTKEIAWMEEVLAV-----ES-SLRTGP--PSTYADRVFENEINIAVEMTDQHYK 870 (1142)
Q Consensus 804 ~~~~~D~~fs~~~~~~-----~~~kl~n~~~~~~~~~~~-----~~-~~~~~~--~~~~~D~~il~~l~~~i~~v~~~ye 870 (1142)
++.++|.+|+++.+.. +++.++|+++++..++.. .+ .++... ....+|+|++++++++++++.++|+
T Consensus 380 ~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me 459 (801)
T PLN02610 380 RPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAME 459 (801)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987642 567888988877766652 11 222111 1135799999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhhhHHHHHhcCCccc----------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 871 NYMFREALKTGFYDLQAARDEYRLSCGAGGL----------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 871 ~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~----------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
+|+|++|++. ++++...+|+|++..+||.. ...++.++++.+++||+||||++|++||+.|
T Consensus 460 ~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~L 530 (801)
T PLN02610 460 KVKLKQGLKT-AMSISSEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQL 530 (801)
T ss_pred hcCHHHHHHH-HHHHHHHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHh
Confidence 9999999998 67899999999999988732 1123456899999999999999999999987
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3.3e-68 Score=610.45 Aligned_cols=336 Identities=23% Similarity=0.399 Sum_probs=286.5
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEK 180 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~ 180 (1142)
++|+|++||||+||.+|||||++++++|+++||+||+|++|+|++||||||+|||.+|++ ++|.++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k------~lg~~~-------- 66 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK------ELGISG-------- 66 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHH------HhCCCC--------
Confidence 479999999999999999999999999999999999999999999999999999999975 235431
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccccc
Q 039882 181 EESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGC 260 (1142)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~ 260 (1142)
.....+.+++++... |.+|++++.+.++++|++||++.
T Consensus 67 ---------~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~lgi~~ 104 (338)
T cd00818 67 ---------KKDIEKMGIAEFNAK---------------------------------CREFALRYVDEQEEQFQRLGVWV 104 (338)
T ss_pred ---------CcchhhcCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhCcee
Confidence 001112233333332 45677777788999999999999
Q ss_pred ccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCc
Q 039882 261 DWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKF 340 (1142)
Q Consensus 261 DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~ 340 (1142)
||++.|.|++ +.|.+.++++|.+|+++|+||++.++|+|
T Consensus 105 ~~~~~~~T~~--~~~~~~v~~~f~~L~~~G~iY~~~~~v~~--------------------------------------- 143 (338)
T cd00818 105 DWENPYKTMD--PEYMESVWWVFKQLHEKGLLYRGYKVVPW--------------------------------------- 143 (338)
T ss_pred cCCCCeECCC--HHHHHHHHHHHHHHHHCCCEeccCCeeee---------------------------------------
Confidence 9999999988 99999999999999999999999888877
Q ss_pred ccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecC
Q 039882 341 GPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIG 420 (1142)
Q Consensus 341 ~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G 420 (1142)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCC
Q 039882 421 LPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGD 500 (1142)
Q Consensus 421 ~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~ 500 (1142)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCC
Q 039882 501 KSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSG 580 (1142)
Q Consensus 501 ~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg 580 (1142)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcce
Q 039882 581 DECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTI 660 (1142)
Q Consensus 581 ~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~i 660 (1142)
|++++.++|||++++ +|++++++.+++++|+|+..++++.+|+++|+||||||||+||||||+ |.+++ ++++
T Consensus 144 -~v~~~~~~qwf~~l~--~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~---~~~~~--~~~~ 215 (338)
T cd00818 144 -PLIYRATPQWFIRVT--KIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPV---WYCED--CGEV 215 (338)
T ss_pred -EEEEEecCeEEEEcH--HHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeE---EEecC--CCeE
Confidence 001123679999996 799999999999999999999999999999999999999999999995 55654 3456
Q ss_pred eeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchh
Q 039882 661 YMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQN 739 (1142)
Q Consensus 661 y~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~ 739 (1142)
|| + .+++|+||||||++++.+ .+++.+. ++|++|||+|++++|+||+++
T Consensus 216 ~~---------~----------------~~~~v~~vWfda~~~~~~~~~~~~~~-----~~~~~~~p~d~~~~GkDii~~ 265 (338)
T cd00818 216 LV---------R----------------RVPDVLDVWFDSGSMPYAQLHYPFEN-----EDFEELFPADFILEGSDQTRG 265 (338)
T ss_pred EE---------e----------------cCCceEEEEEeCCCCHHHHcCCCCcc-----hhhhccCCCeEEeecchHHhH
Confidence 65 1 146899999999887754 4565432 468999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 740 HLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 740 hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
||.+.++.+.++.+..|+ +++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.++.++|++|
T Consensus 266 wf~~~~~~~~~~~~~~p~-~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 266 WFYSLLLLSTALFGKAPY-KNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred HHHHHHHHHHHhcCCCcc-ceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 999999888887776555 9999999998 58999999999999999999999999999999999889999876
No 39
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-66 Score=612.97 Aligned_cols=480 Identities=23% Similarity=0.274 Sum_probs=383.7
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
..+|+||+|.|||||.|||||+++++.+|+++||+||+|++|+|+-|.|.||+||+.+|++ .|++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-------~g~t-------- 68 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-------EGIT-------- 68 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-------cCCC--------
Confidence 4689999999999999999999999999999999999999999999999999999999964 3543
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.++++.+...+++.++.|+++
T Consensus 69 ----------------------------------------------------------P~el~d~~~~~~~~~~~~l~Is 90 (558)
T COG0143 69 ----------------------------------------------------------PQELVDKNHEEFKELFKALNIS 90 (558)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCc
Confidence 3344555556788999999999
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
+|- -..|++ |.+.++++.+|.+|+++|+||.+..++.|||+|++.|.|.+++... |
T Consensus 91 fD~--F~rTt~--~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~c---p----------------- 146 (558)
T COG0143 91 FDN--FIRTTS--PEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTC---P----------------- 146 (558)
T ss_pred ccc--cccCCC--HHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccC---C-----------------
Confidence 883 345665 8999999999999999999999999999999999988875432110 0
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
.
T Consensus 147 -------------------------------~------------------------------------------------ 147 (558)
T COG0143 147 -------------------------------K------------------------------------------------ 147 (558)
T ss_pred -------------------------------C------------------------------------------------
Confidence 0
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
.+.. ...|
T Consensus 148 --------cg~~----------------------------------------------------------------~arG 155 (558)
T COG0143 148 --------CGGE----------------------------------------------------------------DARG 155 (558)
T ss_pred --------cCcc----------------------------------------------------------------ccCc
Confidence 0000 0001
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+.|.. +| ..+.-.+...|+|+.|
T Consensus 156 D~Ce~-----------------------------------Cg----------------------~~~~P~~l~~p~~~i~ 178 (558)
T COG0143 156 DQCEN-----------------------------------CG----------------------RTLDPTELINPVCVIS 178 (558)
T ss_pred chhhh-----------------------------------cc----------------------CcCCchhcCCCeeEee
Confidence 11100 00 0000001125899999
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhc--CceeCchhhhhHHHhhhc-CCceeeec-ccCCCccCCCCCceeeccC
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNS--MNLYHDENRHGFEHTLGW-LNQWACSR-SFGLGTRIPWDPQFLVESL 655 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~--v~~~P~~~r~~~~~~i~~-l~DW~ISR-qr~WG~PIP~d~~~~iesl 655 (1142)
|...+++.+..||++++ .+.+.+++.+++ -...|+..|+.+.+||.. |+|||||| ...||+|||.+
T Consensus 179 g~~p~~r~~~hyFf~L~--~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~-------- 248 (558)
T COG0143 179 GATPEVREEEHYFFRLS--KFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGD-------- 248 (558)
T ss_pred CCCcccccceeEEEEHH--HhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCC--------
Confidence 99999999999999996 699999999985 355899999999999855 99999999 89999999931
Q ss_pred CCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcc----eE
Q 039882 656 SDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFD----LR 730 (1142)
Q Consensus 656 ~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~D----l~ 730 (1142)
...|++||||.-....+ ++...+ .....+|+.|||.| +|
T Consensus 249 ----------------------------------p~kv~YVWfDAligYisa~~~~~~--~~~~~~~~~~W~~~~~e~vh 292 (558)
T COG0143 249 ----------------------------------PGKVIYVWFDALIGYISALGELAE--IGDDEDFKKFWPADDTELVH 292 (558)
T ss_pred ----------------------------------CCCEEEEeeccHHHHHHHhcchhc--cCChHHHHhhCCCCCceEEE
Confidence 13578888885433322 121111 01245799999999 99
Q ss_pred EeecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCC
Q 039882 731 VSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDD 809 (1142)
Q Consensus 731 ~~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D 809 (1142)
+.||||++|| ++||++++.+.+ +.|+.|++|||++.+|+|||||+||+|+|.++++.||+|++||||+...+.++|
T Consensus 293 fIGKDii~FH---av~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D 369 (558)
T COG0143 293 FIGKDIIRFH---AVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSD 369 (558)
T ss_pred EeccccCcch---hhHHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCC
Confidence 9999999999 999999999875 789999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHH-----HHHHHHHHHHHHHHHHhhh-c-cCCCCC-CCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 039882 810 ANFVFDTANT-----GILRLTKEIAWMEEVLAVE-S-SLRTGP-PSTYADRVFENEINIAVEMTDQHYKNYMFREALKTG 881 (1142)
Q Consensus 810 ~~fs~~~~~~-----~~~kl~n~~~~~~~~~~~~-~-~~~~~~-~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~ 881 (1142)
.+|+++.+.+ +.+.+.|++++..+.+... + .++... .....|+.++..+..+.+.+.++|+.++|++|+..
T Consensus 370 ~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~- 448 (558)
T COG0143 370 GDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEE- 448 (558)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-
Confidence 9999998753 4678889888887766542 2 222211 11257899999999999999999999999999988
Q ss_pred HHHHHhhhHHHHHhcCCccch-----------HHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC
Q 039882 882 FYDLQAARDEYRLSCGAGGLN-----------RDLVWRFMDVQTRLITPICPHYAEYVWRVILKK 935 (1142)
Q Consensus 882 ~~~l~~~~~~Y~~~~~~~~~~-----------~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~ 935 (1142)
++.+....|.|++..+||... ..++.++++.++.+|+||||.+|++||+.| |.
T Consensus 449 i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L-~~ 512 (558)
T COG0143 449 IMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQL-GL 512 (558)
T ss_pred HHHHHHHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHh-CC
Confidence 678999999999999988432 124566789999999999999999999987 54
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2.2e-58 Score=526.07 Aligned_cols=310 Identities=29% Similarity=0.514 Sum_probs=261.2
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccccc
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~ 181 (1142)
||+|++|||||||.|||||+++++++|+++||+||+||+|+|++||||||+|||.+|++. .+.+
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~------~~~~---------- 64 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK------GGRK---------- 64 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh------cCcc----------
Confidence 599999999999999999999999999999999999999999999999999999999752 1211
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccc
Q 039882 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCD 261 (1142)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~D 261 (1142)
.+...+++|. ..|.+|++++.+.++++|++||+++|
T Consensus 65 -----------~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~~lgI~~D 100 (312)
T cd00668 65 -----------KKTIWIEEFR---------------------------------EDPKEFVEEMSGEHKEDFRRLGISYD 100 (312)
T ss_pred -----------cccccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 0000111221 13678888888999999999999999
Q ss_pred cccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcc
Q 039882 262 WRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFG 341 (1142)
Q Consensus 262 W~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~ 341 (1142)
|++.|.|++ |+|.+.++++|.+|+++|+||++.++| +
T Consensus 101 w~~~~~T~~--~~~~~~v~~~f~~L~~~G~iY~~~~~v-------------------------~---------------- 137 (312)
T cd00668 101 WSDEYITTE--PEYSKAVELIFSRLYEKGLIYRGTHPV-------------------------R---------------- 137 (312)
T ss_pred CCCCeECCC--HHHHHHHHHHHHHHHHCCCEEeeccee-------------------------E----------------
Confidence 999999987 999999999999999999999887665 0
Q ss_pred cCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCC
Q 039882 342 PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGL 421 (1142)
Q Consensus 342 ~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~ 421 (1142)
T Consensus 138 -------------------------------------------------------------------------------- 137 (312)
T cd00668 138 -------------------------------------------------------------------------------- 137 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCc
Q 039882 422 PLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDK 501 (1142)
Q Consensus 422 ~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~ 501 (1142)
T Consensus 138 -------------------------------------------------------------------------------- 137 (312)
T cd00668 138 -------------------------------------------------------------------------------- 137 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCC
Q 039882 502 SAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGD 581 (1142)
Q Consensus 502 ~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~ 581 (1142)
T Consensus 138 -------------------------------------------------------------------------------- 137 (312)
T cd00668 138 -------------------------------------------------------------------------------- 137 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCccee
Q 039882 582 ECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIY 661 (1142)
Q Consensus 582 ~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy 661 (1142)
.++|||++++ ++++++++.+++++|+|+..++++.+||++..|||||||+.||+|+|
T Consensus 138 -----~~~~~f~~~~--~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P---------------- 194 (312)
T cd00668 138 -----ITEQWFFDMP--KFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP---------------- 194 (312)
T ss_pred -----eeeeEEEEcH--HHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC----------------
Confidence 0124555554 46777777777777899999999999999988999999999999999
Q ss_pred eehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhh
Q 039882 662 MAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNH 740 (1142)
Q Consensus 662 ~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~h 740 (1142)
.+|+||||||+.++.. .+++.+ +++|.+|||.|++++|+||+++|
T Consensus 195 -----------------------------~~~i~~Wfds~~~~~~~~~~~~~-----~~~~~~~~~~di~~~G~D~~~~h 240 (312)
T cd00668 195 -----------------------------EDVFDVWFDSGIGPLGSLGYPEE-----KEWFKDSYPADWHLIGKDILRGW 240 (312)
T ss_pred -----------------------------cccccchhhccHHHHHHcCCCcc-----chhhhhcCCceEEEEecchhhhH
Confidence 1578999999876653 333322 34688999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeeEEeecC-ccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 741 LTFCIYNHTAIMSQRHWPRGFRCNGHIMLNS-EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 741 l~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G-~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
+.+.+..+.++.+..+ |+.+++|||++.+| +|||||+||+|+|.+++++||+|++|||+++.+++++|.+|
T Consensus 241 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 241 ANFWITMLVALFGEIP-PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHHHHHHhcCCCC-cceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999988888776544 59999999999665 99999999999999999999999999999999889999876
No 41
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.8e-56 Score=509.20 Aligned_cols=310 Identities=40% Similarity=0.689 Sum_probs=266.7
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccccc
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~ 181 (1142)
||+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++ .|.
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-------~g~----------- 62 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-------IGR----------- 62 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-------cCC-----------
Confidence 69999999999999999999999999999999999999999999999999999998864 232
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccc
Q 039882 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCD 261 (1142)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~D 261 (1142)
+|.+|++++.+.++++|++||+++|
T Consensus 63 -------------------------------------------------------~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 63 -------------------------------------------------------DPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred -------------------------------------------------------CHHHHHHHHHHHHHHHHHHhcccee
Confidence 2557788888899999999999999
Q ss_pred cccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcc
Q 039882 262 WRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFG 341 (1142)
Q Consensus 262 W~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~ 341 (1142)
|++.+.|++ |.|.++++++|.+|+++|+||++..+|+||
T Consensus 88 ~~~~~~t~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------------------- 126 (314)
T cd00812 88 WRREFTTCD--PEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------------------- 126 (314)
T ss_pred cccccccCC--HHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------------------
Confidence 999999987 999999999999999999999999999887
Q ss_pred cCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCC
Q 039882 342 PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGL 421 (1142)
Q Consensus 342 ~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~ 421 (1142)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCc
Q 039882 422 PLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDK 501 (1142)
Q Consensus 422 ~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~ 501 (1142)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCC
Q 039882 502 SAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGD 581 (1142)
Q Consensus 502 ~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~ 581 (1142)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCccee
Q 039882 582 ECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIY 661 (1142)
Q Consensus 582 ~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy 661 (1142)
+.++|||++++++++++++++++++++++|+.+++.+.+|++ ||||+.||+|+|| .+.+++..|+++|
T Consensus 127 ----~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~------isR~~~wGipvP~--~~~i~~w~ds~~y 194 (314)
T cd00812 127 ----KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPIPW--TDTMESLSDSTWY 194 (314)
T ss_pred ----CccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHhe------eeeecCCcCCcCc--ccccccccccHHH
Confidence 002467778866678888999998888899999999988886 9999999999998 4667777888888
Q ss_pred eehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhH
Q 039882 662 MAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHL 741 (1142)
Q Consensus 662 ~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl 741 (1142)
++.|+.++.... . +. ..++..+++|++|||+|+++.|+||+++|+
T Consensus 195 ~~~y~~~~~~~~------------------~----~~-------------~~~~~~~~~~~~w~p~di~v~G~D~i~~h~ 239 (314)
T cd00812 195 YARYTDAHNLEQ------------------P----YE-------------GDLEFDREEFEYWYPVDIYIGGKEHAPNHL 239 (314)
T ss_pred HHHHHhcccccC------------------c----ch-------------hhhhhhHHHHHHhCCCeeeecchhHHHHHH
Confidence 866654322110 0 00 011223567999999999999999999999
Q ss_pred HHHHHHHHHHhcCC----CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchH
Q 039882 742 TFCIYNHTAIMSQR----HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVF 814 (1142)
Q Consensus 742 ~~~l~~~~al~~~~----~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~ 814 (1142)
.+++++++++++.+ ++|+++++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.++ .|.+|++
T Consensus 240 ~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 240 LYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC--cCCCCCC
Confidence 88999999999877 67899999999999999999999999999999999999999999998866 7777763
No 42
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-52 Score=452.49 Aligned_cols=458 Identities=21% Similarity=0.293 Sum_probs=345.3
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
.+.|++|+|--|+|..+||||+++.+++|.++||+|++|..|.|.-|.|.|||-|+.+|. ..|..
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaa-------tnG~~-------- 102 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAA-------TNGRN-------- 102 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHh-------hcCCC--------
Confidence 468999999999999999999999999999999999999999999999999999998884 23532
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+.++...+...+-++..|+.
T Consensus 103 ----------------------------------------------------------P~e~cDr~s~~f~qL~k~~gi~ 124 (578)
T KOG0436|consen 103 ----------------------------------------------------------PPELCDRISQSFRQLWKDAGIA 124 (578)
T ss_pred ----------------------------------------------------------hHHHHhhhhHHHHHHHHHhCcc
Confidence 1122223334445667888887
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
++ +...||| |..++.|+..+..+.++|+||+|.+--.||.+|+|...+..+...
T Consensus 125 yt--~FIRTTd--pkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~---------------------- 178 (578)
T KOG0436|consen 125 YT--KFIRTTD--PKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN---------------------- 178 (578)
T ss_pred hh--heeecCC--chHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC----------------------
Confidence 76 4567777 999999999999999999999999999999888775433221100
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
T Consensus 179 -------------------------------------------------------------------------------- 178 (578)
T KOG0436|consen 179 -------------------------------------------------------------------------------- 178 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
|=..++
T Consensus 179 ------p~~~gk-------------------------------------------------------------------- 184 (578)
T KOG0436|consen 179 ------PCPPGK-------------------------------------------------------------------- 184 (578)
T ss_pred ------CCCCCc--------------------------------------------------------------------
Confidence 000000
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+|.--|
T Consensus 185 --------------------------------------------------------------------------~vsmEs 190 (578)
T KOG0436|consen 185 --------------------------------------------------------------------------VVSMES 190 (578)
T ss_pred --------------------------------------------------------------------------eeeecc
Confidence 000114
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhc-Cce-eCchhhhhHHHhh-hcCCceeeec--c-cCCCccCCCCCceeec
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNS-MNL-YHDENRHGFEHTL-GWLNQWACSR--S-FGLGTRIPWDPQFLVE 653 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~-v~~-~P~~~r~~~~~~i-~~l~DW~ISR--q-r~WG~PIP~d~~~~ie 653 (1142)
|.||+++..+.+|..++ .+++.+.+++++ -++ .|+..++...+|+ ..++|-.||| + ..||+|+|-|
T Consensus 191 g~~vv~~kE~NY~FrLS--kfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~d------ 262 (578)
T KOG0436|consen 191 GNPVVWRKEDNYFFRLS--KFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGD------ 262 (578)
T ss_pred CCceeEecccceeeeHH--hhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCC------
Confidence 44555555556666665 477777777763 444 4555567777775 4589999999 4 7899999943
Q ss_pred cCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEee
Q 039882 654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSG 733 (1142)
Q Consensus 654 sl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G 733 (1142)
+..|||+|++....++.. .|+|....+ .+..+..|||+.+|+.|
T Consensus 263 --dsQtIYVWfDAL~nYiSv---------------------------------ig~~~~~~N-~k~~ls~~wPat~HvIG 306 (578)
T KOG0436|consen 263 --DSQTIYVWFDALLNYISV---------------------------------IGYPNKQQN-LKTALSFGWPATLHVIG 306 (578)
T ss_pred --CcceEEEeHHHHhhHHHh---------------------------------hcCCchhcc-ccceeecCCCceeeehh
Confidence 224666666555444431 222221110 13456788999999999
Q ss_pred cccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 734 KDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 734 ~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
+||+||| ++||++++++.+ |+|+.|++|||++.+|.|||||+||||+|.+++++||+|++||||+..+..+.|.+|
T Consensus 307 KDIlrFH---avYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy 383 (578)
T KOG0436|consen 307 KDILRFH---AVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDY 383 (578)
T ss_pred hhhhhhh---hhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCc
Confidence 9999999 999999999877 789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHH-----HHHHHHHHHHHHHHHHH-hhhc---cCC-CCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 039882 813 VFDTAN-----TGILRLTKEIAWMEEVL-AVES---SLR-TGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGF 882 (1142)
Q Consensus 813 s~~~~~-----~~~~kl~n~~~~~~~~~-~~~~---~~~-~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~ 882 (1142)
+++.+. ...+.++|+++++.+-- ...+ .+- ........+.-+.+.++++.+.+.+.|++|.+..|+++ .
T Consensus 384 ~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~-V 462 (578)
T KOG0436|consen 384 SEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEA-V 462 (578)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHH-H
Confidence 998654 34678899988776521 0011 010 01111234556888999999999999999999999987 5
Q ss_pred HHHHhhhHHHHHhcCCccc-------------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 883 YDLQAARDEYRLSCGAGGL-------------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 883 ~~l~~~~~~Y~~~~~~~~~-------------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
.++.+..|.|.+...||.. ....+.++|+++..+|.||+|.++.+++.+|
T Consensus 463 ~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsql 525 (578)
T KOG0436|consen 463 LSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQL 525 (578)
T ss_pred HHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHc
Confidence 6688999999988888731 1234667899999999999999999999998
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=5e-53 Score=482.64 Aligned_cols=313 Identities=23% Similarity=0.308 Sum_probs=248.9
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccccc
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~ 181 (1142)
+|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.+|++ .|.+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-------~g~~---------- 63 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-------EGVT---------- 63 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-------cCCC----------
Confidence 58999999999999999999999999999999999999999999999999999998863 2432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccc
Q 039882 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCD 261 (1142)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~D 261 (1142)
|.++++.+.+.+++++++||+.+|
T Consensus 64 --------------------------------------------------------~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 64 --------------------------------------------------------PQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCcCC
Confidence 234455566788999999998766
Q ss_pred cccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcc
Q 039882 262 WRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFG 341 (1142)
Q Consensus 262 W~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~ 341 (1142)
..+.|++ +.+...++++|.+|+++|++|++..++.|||.|++.|++
T Consensus 88 --~~~~tt~--~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e------------------------------ 133 (319)
T cd00814 88 --YFIRTTS--PRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPE------------------------------ 133 (319)
T ss_pred --CCeeCCC--HHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeE------------------------------
Confidence 4566776 889999999999999999999999999999998876540
Q ss_pred cCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCC
Q 039882 342 PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGL 421 (1142)
Q Consensus 342 ~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~ 421 (1142)
T Consensus 134 -------------------------------------------------------------------------------- 133 (319)
T cd00814 134 -------------------------------------------------------------------------------- 133 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCc
Q 039882 422 PLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDK 501 (1142)
Q Consensus 422 ~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~ 501 (1142)
T Consensus 134 -------------------------------------------------------------------------------- 133 (319)
T cd00814 134 -------------------------------------------------------------------------------- 133 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCC
Q 039882 502 SAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGD 581 (1142)
Q Consensus 502 ~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~ 581 (1142)
T Consensus 134 -------------------------------------------------------------------------------- 133 (319)
T cd00814 134 -------------------------------------------------------------------------------- 133 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcccCccceecCchHHHHHHHHHHhcCc--eeCchhhhhHHHhhhc-CCceeeeccc-CCCccCCCCCceeeccCCC
Q 039882 582 ECVVALTDQWYITYGEEEWKRLATECLNSMN--LYHDENRHGFEHTLGW-LNQWACSRSF-GLGTRIPWDPQFLVESLSD 657 (1142)
Q Consensus 582 ~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~--~~P~~~r~~~~~~i~~-l~DW~ISRqr-~WG~PIP~d~~~~iesl~d 657 (1142)
++.++|||++++ ++++.+++.+++-. ++|+..++.+.+|++. ++|||||||. .||+|+|.+ +
T Consensus 134 ---~~~~~~~ff~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~--------~- 199 (319)
T cd00814 134 ---WREEEHYFFRLS--KFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLD--------P- 199 (319)
T ss_pred ---EEeeeeEEEEhH--HHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCC--------C-
Confidence 000234555553 46666666665433 6789999999999886 9999999999 999999942 1
Q ss_pred cceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeeccc
Q 039882 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDL 736 (1142)
Q Consensus 658 ~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ 736 (1142)
..++++|||+...+.+ .+++.+.. .....|...+|.++++.|+|+
T Consensus 200 ---------------------------------~~~~yvWfda~~~y~~~~~~~~~~~-~~~~~~~~~~~~~v~~~G~D~ 245 (319)
T cd00814 200 ---------------------------------GKVIYVWFDALIGYISATGYYNEEW-GNSWWWKDGWPELVHFIGKDI 245 (319)
T ss_pred ---------------------------------CcEEEEehhhHHHHHHHcccccccc-cchhhhhcCCCceEEEEeech
Confidence 2466777775443322 22221100 000234566899999999999
Q ss_pred chhhHHHHHHHHHHHhcC-CCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 737 IQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 737 ir~hl~~~l~~~~al~~~-~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
+++| ++++++++.+. .++|+.+++|||++.+|+|||||+||+|+|.+++++||+|++|||+++.++..+|.+|
T Consensus 246 ~~fh---~~~~pa~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 246 IRFH---AIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred hhhh---HHHHHHHHHhCCCCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 9999 45555555543 3677999999999999999999999999999999999999999999999999999987
No 44
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.5e-53 Score=495.95 Aligned_cols=377 Identities=26% Similarity=0.355 Sum_probs=266.2
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccC
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEE 182 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~ 182 (1142)
|+||+|+|||||.|||||+.+++.+|+++||+||+|++|+|+.|+|+||+||+.+|++ .|.+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-------~g~~----------- 62 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-------QGID----------- 62 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-------TTS------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-------cCCC-----------
Confidence 7899999999999999999999999999999999999999999999999999999974 3432
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHccccccc
Q 039882 183 SPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDW 262 (1142)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW 262 (1142)
|.++++.+...+++.++++|++.|.
T Consensus 63 -------------------------------------------------------p~~~~~~~~~~~~~~~~~~~I~~D~ 87 (391)
T PF09334_consen 63 -------------------------------------------------------PEEFCDKYSAKFKELLEALNISYDR 87 (391)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 3455556667889999999999983
Q ss_pred ccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCccc
Q 039882 263 RRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGP 342 (1142)
Q Consensus 263 ~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~ 342 (1142)
...|++ +.+.++++++|.+|+++|+||++.....||+.|++.++|.+++.. +|.
T Consensus 88 --F~rTt~--~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~---CP~------------------- 141 (391)
T PF09334_consen 88 --FIRTTD--DRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGT---CPY------------------- 141 (391)
T ss_dssp --EEETTS--HHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCE---ETT-------------------
T ss_pred --eeCCCC--HHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeecc---ccC-------------------
Confidence 334655 899999999999999999999999999999999998888654311 110
Q ss_pred CCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCe
Q 039882 343 LEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLP 422 (1142)
Q Consensus 343 l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~ 422 (1142)
| -. +. ++ |-.
T Consensus 142 --------------------C---~~-------------~~------------a~----------------------g~~ 151 (391)
T PF09334_consen 142 --------------------C---GS-------------DK------------AR----------------------GDQ 151 (391)
T ss_dssp --------------------T------------------SS------------CT----------------------TTE
T ss_pred --------------------c---Cc-------------cc------------cC----------------------CCc
Confidence 0 00 00 00 000
Q ss_pred EecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCch
Q 039882 423 LKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKS 502 (1142)
Q Consensus 423 ~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~ 502 (1142)
| +..| .
T Consensus 152 C---------------------------------------------------e~cG---------------------~-- 157 (391)
T PF09334_consen 152 C---------------------------------------------------ENCG---------------------R-- 157 (391)
T ss_dssp E---------------------------------------------------TTTS---------------------S--
T ss_pred c---------------------------------------------------cCCC---------------------C--
Confidence 0 0001 0
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCe
Q 039882 503 AERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDE 582 (1142)
Q Consensus 503 a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~ 582 (1142)
.+.-.+...|+|-.||.+
T Consensus 158 --------------------------------------------------------------~~~~~~l~~p~~~~~g~~ 175 (391)
T PF09334_consen 158 --------------------------------------------------------------PLEPEELINPVCKICGSP 175 (391)
T ss_dssp --------------------------------------------------------------BEECCCSECEEETTTS-B
T ss_pred --------------------------------------------------------------CcccccccCCcccccccc
Confidence 000011124788899999
Q ss_pred EEEcccCccceecCchHHHHHHHHHHhcCc-eeCchhhhhHHHhhhc-CCceeeecccCCCccCCCCCceeeccCCCcce
Q 039882 583 CVVALTDQWYITYGEEEWKRLATECLNSMN-LYHDENRHGFEHTLGW-LNQWACSRSFGLGTRIPWDPQFLVESLSDSTI 660 (1142)
Q Consensus 583 ~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~-~~P~~~r~~~~~~i~~-l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~i 660 (1142)
++++-++|||++++ .+++.+.+.++.-. +.|+..++.+.+|++. |+||||||...||+|+|.+ .+.+|
T Consensus 176 ~~~r~e~~~ff~L~--~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~--------~~~~i 245 (391)
T PF09334_consen 176 PEVREEENYFFKLS--KFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGD--------PGQVI 245 (391)
T ss_dssp -EEEEEEEEEE-GG--GGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTE--------EEEEE
T ss_pred CccccceEEEEehH--HhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeecc--------CCceE
Confidence 99999999999996 69999999998653 4666777778899876 9999999999999999942 34456
Q ss_pred eeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCC-----cceEEeecc
Q 039882 661 YMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYP-----FDLRVSGKD 735 (1142)
Q Consensus 661 y~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P-----~Dl~~~G~D 735 (1142)
|+|++....++.. .+...+.. ...++|..||+ --+++.|+|
T Consensus 246 yVWfdal~~Ylt~---------------------------------~~~~~~~~-~~~~~~~~~w~~~~~~~~v~~iGkD 291 (391)
T PF09334_consen 246 YVWFDALIGYLTA---------------------------------TGYLAEKR-GDPEEFKKWWANDSDVEIVHFIGKD 291 (391)
T ss_dssp -HHHHHHTHHHHT---------------------------------TTTTHHHT-TTSHHHHHHHCST--SEEEEEEEGG
T ss_pred EEcchHHHHHHHH---------------------------------hccccccc-cccchhhhhccccCCceEEEEEccc
Confidence 6665554444331 11111000 01245666662 129999999
Q ss_pred cchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchH
Q 039882 736 LIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVF 814 (1142)
Q Consensus 736 ~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~ 814 (1142)
++++| ++++++++.+.+ ++|+.+++|||++.+|+|||||+||+|+|.+++++||+|++||||++.++..+|.+|++
T Consensus 292 i~~fH---~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~ 368 (391)
T PF09334_consen 292 IIRFH---AIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSW 368 (391)
T ss_dssp GHHHH---HTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-H
T ss_pred hhHHH---HHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCH
Confidence 99999 777777777654 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-----HHHHHHHHH
Q 039882 815 DTANTGIL-----RLTKEIAWM 831 (1142)
Q Consensus 815 ~~~~~~~~-----kl~n~~~~~ 831 (1142)
+.+.+.++ .+.|+++++
T Consensus 369 ~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 369 EDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhcc
Confidence 88765443 466666543
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.9e-35 Score=352.30 Aligned_cols=154 Identities=25% Similarity=0.305 Sum_probs=133.3
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAG 804 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~ 804 (1142)
-|.|+|.+|+|++++|+.+.++.+.++++ .||++.++.+|||..+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 219 ~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~- 296 (463)
T PRK00260 219 ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSA- 296 (463)
T ss_pred CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhC-
Confidence 37899999999999999999999999999 7897888888999999999999999999999999999999999999975
Q ss_pred CCCCCccchHHHHHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHH
Q 039882 805 DGVDDANFVFDTANTG---ILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKT 880 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~---~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~ 880 (1142)
.+.++++|+++.+... +.+++|+++++. . ...|.|++++++.+++++.++| ++|+++.|+..
T Consensus 297 ~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~---~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~ 362 (463)
T PRK00260 297 HYRSPLNFSEEALEQAKKALERLYNALAETA---L-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV 362 (463)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHhh---h-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6889999999877644 556666655432 0 1367899999999999999999 49999999987
Q ss_pred HHHHHHhhhHHHHHh
Q 039882 881 GFYDLQAARDEYRLS 895 (1142)
Q Consensus 881 ~~~~l~~~~~~Y~~~ 895 (1142)
++++....|.|+..
T Consensus 363 -l~~lv~~~n~~~~~ 376 (463)
T PRK00260 363 -LFELAREINRALET 376 (463)
T ss_pred -HHHHHHHHHHHhhc
Confidence 67888888888754
No 46
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-35 Score=320.30 Aligned_cols=303 Identities=17% Similarity=0.185 Sum_probs=230.3
Q ss_pred eEEEcccCccceecCchHHHHHHHHHHhcCc---eeCchhhhhHHHhh-hcCCceeeecccCCCccCCCCCceeeccCCC
Q 039882 582 ECVVALTDQWYITYGEEEWKRLATECLNSMN---LYHDENRHGFEHTL-GWLNQWACSRSFGLGTRIPWDPQFLVESLSD 657 (1142)
Q Consensus 582 ~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~---~~P~~~r~~~~~~i-~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d 657 (1142)
--+++.+..-|++++ .++.++.+.+++-- -....+++-..+|+ +.++..||+|..-||||+|.
T Consensus 191 ~p~~~~t~h~Fl~L~--kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl----------- 257 (567)
T KOG1247|consen 191 GPVVRQTQHLFLSLD--KLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL----------- 257 (567)
T ss_pred CCeeeeeeEEEEEhH--HhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh-----------
Confidence 345677889999995 68989888887532 12344566677885 67899999999999999993
Q ss_pred cceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCC----cc-eEEe
Q 039882 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYP----FD-LRVS 732 (1142)
Q Consensus 658 ~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P----~D-l~~~ 732 (1142)
|.+.+.||+||||.-.... ++.... -++|+.||- ++ +.+.
T Consensus 258 -----------------------------e~fk~KVfYVWFDA~IGYl--sit~~y----t~ew~kWwknpE~v~LyqFm 302 (567)
T KOG1247|consen 258 -----------------------------EKFKDKVFYVWFDAPIGYL--SITKNY----TDEWEKWWKNPENVELYQFM 302 (567)
T ss_pred -----------------------------hhhcccEEEEEEcCcceEE--Eeehhh----hHHHHHHhcCHhhhhHHHHh
Confidence 1224679999999644332 233332 368899984 23 5689
Q ss_pred ecccchhhHHHHHHHHHHHhcCC-CCC--cEEEEeeEEeecCccccccCCCcCChHHHHH-HcChhhhhhhhhccCCCCC
Q 039882 733 GKDLIQNHLTFCIYNHTAIMSQR-HWP--RGFRCNGHIMLNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLADAGDGVD 808 (1142)
Q Consensus 733 G~D~ir~hl~~~l~~~~al~~~~-~~P--k~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~~~~~~~ 808 (1142)
|+|.+.|| +++++....+.. .|+ +++.+..++..+..|+|||+|-+|--.++.+ ..++|+.||||++..+..+
T Consensus 303 gKDNVpFH---tviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEss 379 (567)
T KOG1247|consen 303 GKDNVPFH---TVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESS 379 (567)
T ss_pred ccCCCcce---eeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCccc
Confidence 99999999 666666665543 565 8888888998888899999999999888887 4799999999999999999
Q ss_pred CccchHHHHH-----HHHHHHHHHHHHHHHHHhhh-cc-CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 039882 809 DANFVFDTAN-----TGILRLTKEIAWMEEVLAVE-SS-LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTG 881 (1142)
Q Consensus 809 D~~fs~~~~~-----~~~~kl~n~~~~~~~~~~~~-~~-~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~ 881 (1142)
|..|+++++. .+++.|+|+++++..+++.. +. ++.-.+ ..-|+-++..++.+..+..++||.-..++|++.
T Consensus 380 Ds~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~-~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~- 457 (567)
T KOG1247|consen 380 DSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMEL-TSGDKKLLEDVNELLAKYVAAMEKVKLREALKT- 457 (567)
T ss_pred CCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceee-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999874 35677888887777766542 21 222222 234889999999999999999999999999998
Q ss_pred HHHHHhhhHHHHHhcCCcc----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCC
Q 039882 882 FYDLQAARDEYRLSCGAGG----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGF 938 (1142)
Q Consensus 882 ~~~l~~~~~~Y~~~~~~~~----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~s 938 (1142)
.+++....|.|++..+.+. ....+...++..+..||+|+||.++.+|...+ +.+..
T Consensus 458 ~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kql-nlp~~ 523 (567)
T KOG1247|consen 458 AMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQL-NLPET 523 (567)
T ss_pred HHHHHHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHh-CCccc
Confidence 5678899999987764221 11124567788889999999999999999887 44433
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.98 E-value=1.3e-29 Score=310.15 Aligned_cols=167 Identities=22% Similarity=0.259 Sum_probs=138.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAG 804 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~ 804 (1142)
.|+|+|.+|.|+++.|+-.-+..+.|+++..+|++.++++|||+++|+|||||+||+|+|.++|++||+|++|||+++.
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~- 345 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH- 345 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc-
Confidence 4899999999999999999999999999998997777777999999999999999999999999999999999999977
Q ss_pred CCCCCccchHHHHHHHHHH---HHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHH
Q 039882 805 DGVDDANFVFDTANTGILR---LTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKT 880 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~~~k---l~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~ 880 (1142)
.+.+|++|+++.+....+. +.|++..+...+... ...........|+|++..++.+.+.+.++| ++|+++.|+..
T Consensus 346 ~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~-~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~ 424 (651)
T PTZ00399 346 KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRES-ELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA 424 (651)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7999999999987765544 444443333222211 111111114679999999999999999999 78999999987
Q ss_pred HHHHHHhhhHHHHH
Q 039882 881 GFYDLQAARDEYRL 894 (1142)
Q Consensus 881 ~~~~l~~~~~~Y~~ 894 (1142)
+++|...+|.|+.
T Consensus 425 -L~eLv~~~N~yi~ 437 (651)
T PTZ00399 425 -LQKLISATNTYLN 437 (651)
T ss_pred -HHHHHHHHHHHHh
Confidence 7889999999986
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.97 E-value=2.8e-29 Score=298.63 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=119.8
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAG 804 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~ 804 (1142)
.|+|+|.+|.|++++|+.+.+..+.++++ .+|++.++.+|||..+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 218 ~~~Dih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~- 295 (465)
T TIGR00435 218 DQIDIHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSV- 295 (465)
T ss_pred CCceeeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhC-
Confidence 36899999999999999999999999998 4777888999999999999999999999999999999999999999976
Q ss_pred CCCCCccchHHHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHH
Q 039882 805 DGVDDANFVFDTANT---GILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKT 880 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~---~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~ 880 (1142)
.+.++++|+++.+.. .+.+|+|+++++...... ... .. .. +......+.+.+.++| +++++..|+..
T Consensus 296 ~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~--~~~-~~--~~----~~~~~~~~~~~f~~al~dDlnt~~a~~~ 366 (465)
T TIGR00435 296 HYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAY--SGN-QS--LN----KFPDEKEFEARFVEAMDDDLNTANALAV 366 (465)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccc-cc--cc----cchhHHHHHHHHHHHHhhccCHHHHHHH
Confidence 689999999997764 456677766655332210 000 00 00 0112334556777788 58999999976
Q ss_pred HHHHHHhhhH
Q 039882 881 GFYDLQAARD 890 (1142)
Q Consensus 881 ~~~~l~~~~~ 890 (1142)
++++....|
T Consensus 367 -l~~~~~~~n 375 (465)
T TIGR00435 367 -LFELAKSIN 375 (465)
T ss_pred -HHHHHHHhh
Confidence 777877666
No 49
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.96 E-value=3.7e-28 Score=279.56 Aligned_cols=144 Identities=24% Similarity=0.240 Sum_probs=116.2
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
+.|+|.+|.|++++|+.+.++.+.++++..+|++.++.+|||..+|+|||||+||+|+|.++++. |++|++|||++++
T Consensus 241 ~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~- 319 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAG- 319 (411)
T ss_pred ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecC-
Confidence 47899999999999999999999999998899888888899999999999999999999999886 8889999999965
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHH
Q 039882 805 DGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTGFY 883 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~~~ 883 (1142)
.+.++++|+++.+++...++..+.+.+... . . . .+..+...+.++| +++++..|+.. ++
T Consensus 320 ~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~-------~--~---~-------~~~~~~~~~~~al~dDln~p~a~~~-l~ 379 (411)
T TIGR03447 320 HYRQDRDWTDAVLAEAEARLARWRAALAAT-------D--A---P-------DATDLIARLRQHLANDLDTPAALAA-VD 379 (411)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHhhc-------c--c---c-------hHHHHHHHHHHHHHhcCChHHHHHH-HH
Confidence 799999999999887766655544333211 0 0 0 1234556677888 58999999976 66
Q ss_pred HHHhhhH
Q 039882 884 DLQAARD 890 (1142)
Q Consensus 884 ~l~~~~~ 890 (1142)
++....|
T Consensus 380 ~~~~~~n 386 (411)
T TIGR03447 380 NWAAAAL 386 (411)
T ss_pred HHHHHHH
Confidence 6765544
No 50
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.6e-27 Score=273.52 Aligned_cols=150 Identities=23% Similarity=0.175 Sum_probs=119.9
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChh--hhhhhhhcc
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSAD--ATRFSLADA 803 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaD--alRl~la~~ 803 (1142)
|.|+|.+|.|+++.|+-+.++.+.++++..+|++.++.+|+|..+|+|||||+||+|+|.+++ +||+| ++|||++++
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell-~~G~d~~~lR~~lls~ 292 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLR-AAGVDPAAIRLALLAG 292 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHH-hccCChhheeEEEecc
Confidence 579999999999999999999999999988996666666777899999999999999999976 55555 999999855
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHH
Q 039882 804 GDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYK-NYMFREALKTGF 882 (1142)
Q Consensus 804 ~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye-~~~f~~a~~~~~ 882 (1142)
.+.++++|+++.+.+...++..+.+.+... . . . .+..+.+.+.++|+ ++++..|+.. +
T Consensus 293 -~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~-------~--~---~-------~~~~~~~~f~~al~dDlnt~~a~~~-l 351 (384)
T PRK12418 293 -HYRADREWTDAVLAEAEARLARWRAAAALP-------A--G---P-------DAADVVARVRAALADDLDTPGALAA-V 351 (384)
T ss_pred -CCCCCcccCHHHHHHHHHHHHHHHHHHhcc-------c--c---c-------hHHHHHHHHHHHHHhcCChHHHHHH-H
Confidence 799999999999887766666554433210 0 0 0 23345678888884 7999999976 7
Q ss_pred HHHHhhhHHHHHhcC
Q 039882 883 YDLQAARDEYRLSCG 897 (1142)
Q Consensus 883 ~~l~~~~~~Y~~~~~ 897 (1142)
+++....|.|.....
T Consensus 352 ~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 352 DGWATDALEGGGDDA 366 (384)
T ss_pred HHHHHHHHhccCCCc
Confidence 888888888876554
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.6e-25 Score=263.93 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=123.4
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHH-cChhhhhhhhhccCC
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAGD 805 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~~ 805 (1142)
.|+|.+|.|+++.|.-..+..+.++.+. +|++.++.+||++.+|+|||||+||+|++.+++++ |+++++|||++++ .
T Consensus 234 ~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~-~ 311 (490)
T PRK14536 234 CDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGG-H 311 (490)
T ss_pred eeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhC-C
Confidence 6899999999999999999999888775 88899999999999999999999999999999998 9999999999986 7
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC---CC---C-CChhhHHHHHHHHHHHHHHHHHh-hhccHHHH
Q 039882 806 GVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRT---GP---P-STYADRVFENEINIAVEMTDQHY-KNYMFREA 877 (1142)
Q Consensus 806 ~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~---~~---~-~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a 877 (1142)
+..+++|+++.+.+..+.+.++.+++............ +. . ....+.-....+..+...+.++| +++++..|
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~A 391 (490)
T PRK14536 312 YRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKA 391 (490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHH
Confidence 99999999999988777777776666554221100000 00 0 00000111234556778888888 58999999
Q ss_pred HHHHHHHHHhhhH
Q 039882 878 LKTGFYDLQAARD 890 (1142)
Q Consensus 878 ~~~~~~~l~~~~~ 890 (1142)
+.. ++++....|
T Consensus 392 l~~-l~~~~~~~n 403 (490)
T PRK14536 392 LSE-LQKLVKDTS 403 (490)
T ss_pred HHH-HHHHHHHhh
Confidence 976 777776555
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.94 E-value=5e-26 Score=270.60 Aligned_cols=163 Identities=23% Similarity=0.161 Sum_probs=123.5
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~ 805 (1142)
+.|+|.+|.|+++.|.-.-+..+.+..+. +|-+..++||||+.+|+|||||+||+|++.+++++||+|++|||++++ .
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~-h 354 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGT-H 354 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeecc-C
Confidence 57999999999999999999999888765 454788999999999999999999999999999999999999999987 6
Q ss_pred CCCCccchHHHHHHHHHH---HHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHH
Q 039882 806 GVDDANFVFDTANTGILR---LTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTG 881 (1142)
Q Consensus 806 ~~~D~~fs~~~~~~~~~k---l~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~ 881 (1142)
+.++++|+++.+...... +.+.+..+...+........ .. ..+.-+...+..+.+.+.++| +++++..|+..
T Consensus 355 yr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~- 430 (557)
T PLN02946 355 YRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFE-KD--SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA- 430 (557)
T ss_pred CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-cc--ccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-
Confidence 889999999988766554 44444333222211000000 00 011123345566778889999 58999999976
Q ss_pred HHHHHhhhHHHHH
Q 039882 882 FYDLQAARDEYRL 894 (1142)
Q Consensus 882 ~~~l~~~~~~Y~~ 894 (1142)
++++....|.++.
T Consensus 431 l~~~vk~~N~~~~ 443 (557)
T PLN02946 431 LSEPLKTINDLLH 443 (557)
T ss_pred HHHHHHHHHHHhh
Confidence 7888888887764
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2.1e-25 Score=265.73 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=119.3
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCC---------------CCCcEEEEeeEEeecCccccccCCCcCChHHHHHH
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQR---------------HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE 790 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~---------------~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~ 790 (1142)
+.|+|.+|.|+++.|.-.-+..+.+..+.. +|-+..+.||||+.+|+|||||+||+|+|.+++++
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh
Confidence 479999999999999999999988887752 46689999999999999999999999999999999
Q ss_pred cChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-
Q 039882 791 FSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY- 869 (1142)
Q Consensus 791 yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y- 869 (1142)
||+|++|||++++ .+.++++|+++.+.+....+.++.+.+..... .. . . ....+..+.+.+.++|
T Consensus 526 ygpdalRl~lLss-hYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~----~~--~---~----~~~~l~~~~~~f~~AL~ 591 (699)
T PRK14535 526 YDPEVVRFFILRA-HYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA----AE--F---M----LSENVNDYTRRFYAAMN 591 (699)
T ss_pred CCHHHHHHHHHcC-CCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh----cc--c---h----hhhhHHHHHHHHHHHHh
Confidence 9999999999986 69999999999888766555555544433210 00 0 0 1123445667788888
Q ss_pred hhccHHHHHHHHHHHHHhhhHH
Q 039882 870 KNYMFREALKTGFYDLQAARDE 891 (1142)
Q Consensus 870 e~~~f~~a~~~~~~~l~~~~~~ 891 (1142)
+++++..|+.. ++++....|.
T Consensus 592 DDlntp~Ala~-L~~lvk~iN~ 612 (699)
T PRK14535 592 DDFGTVEAVAV-LFELAGEVNK 612 (699)
T ss_pred hccChHHHHHH-HHHHHHHHHH
Confidence 58999999976 7777776664
No 54
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.93 E-value=1.9e-25 Score=238.96 Aligned_cols=86 Identities=30% Similarity=0.475 Sum_probs=78.6
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~ 805 (1142)
|.|++.+|.|++++|+.+.++.+.++++. +|++.++..|+|..+|+|||||+||+|+|.+++++||+|++|||+++. .
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~-~ 205 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSS-H 205 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhC-C
Confidence 57899999999999999999999999998 887777777888899999999999999999999999999999999987 4
Q ss_pred CCCCccch
Q 039882 806 GVDDANFV 813 (1142)
Q Consensus 806 ~~~D~~fs 813 (1142)
+.++++|+
T Consensus 206 ~~~~l~f~ 213 (213)
T cd00672 206 YRSPLDFS 213 (213)
T ss_pred cCCCCCCC
Confidence 77888875
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=2.4e-22 Score=235.94 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=117.5
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
..|+|.+|.|+++.|.-..+..+.+..+. +|++.++.+||++.+|+|||||+||+|++.+++++ |+++++|||++++
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~- 310 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTA- 310 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhC-
Confidence 47999999999999999999888887754 77899999999999999999999999999999997 9999999998887
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHH
Q 039882 805 DGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTGFY 883 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~~~ 883 (1142)
.+..+++|+++.+.+....+.++.+.+...+...............+.........+.+.+.++| +++++..|+.. ++
T Consensus 311 ~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~ 389 (481)
T PRK14534 311 HYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LW 389 (481)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HH
Confidence 78999999999988766544444444333322111000000000000000011234456778888 58999999976 77
Q ss_pred HHHhhhHH
Q 039882 884 DLQAARDE 891 (1142)
Q Consensus 884 ~l~~~~~~ 891 (1142)
++....|.
T Consensus 390 ~~~k~~n~ 397 (481)
T PRK14534 390 DIIKDDNL 397 (481)
T ss_pred HHHHHHHH
Confidence 77765553
No 56
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.89 E-value=7.1e-22 Score=224.96 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=94.2
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc--------CchhHHHHHHHHHHHHHcCCCC
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT--------GMPIKASADKLAREIKQFGNPP 172 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~--------GlPIe~~a~k~~~e~~~~g~~~ 172 (1142)
++|+|++|+ ||||.+||||++.++..|+++||+||+|++|.|+.|+|+| |+|-+ ++ +..|.+-
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~------~~~G~pi 89 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YE------QYIGMPL 89 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HH------HhcCccc
Confidence 579999998 5999999999999999999999999999999999999999 46654 11 1235321
Q ss_pred CCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHh-hhcchhhhhhcCchHHHH
Q 039882 173 VFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEIS-EFQEPEKWLNFFPPLAKE 251 (1142)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~-~f~~p~~w~~~~~~~~~~ 251 (1142)
..+. .|-.+..|+++|....++
T Consensus 90 ---------------------------------------------------------~~ip~p~g~~~~~~d~~~~~f~~ 112 (353)
T cd00674 90 ---------------------------------------------------------SSVPDPFGCCESYAEHFERPFEE 112 (353)
T ss_pred ---------------------------------------------------------hhchhhcCCCHHHHHHHHHHHHH
Confidence 0000 111133778888889999
Q ss_pred HHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCccee
Q 039882 252 DLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIK 294 (1142)
Q Consensus 252 ~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~ 294 (1142)
.|.+||+++|+ |.|++. ..--.+.+.++..|.+.+.|..
T Consensus 113 ~l~~lgi~~d~---~~~T~~-y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 113 SLEKLGIEVEF---ISQSQM-YKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred HHHHcCCeeee---eecCCc-hhhchHHHHHHHHHHHCChHHH
Confidence 99999999996 666652 2333688888899999988854
No 57
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=2.2e-19 Score=217.69 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=95.2
Q ss_pred EEEEe---eEEe-ecCccccccCCCcCChHHHHHH-cCh----------------hhhhhhhhccCCCCCCccchHHHHH
Q 039882 760 GFRCN---GHIM-LNSEKMSKSTGNFRTLKQAIEE-FSA----------------DATRFSLADAGDGVDDANFVFDTAN 818 (1142)
Q Consensus 760 ~v~~h---G~vl-~~G~KMSKS~GNvI~p~~~i~~-yGa----------------DalRl~la~~~~~~~D~~fs~~~~~ 818 (1142)
.++.| |+++ .+|+|||||+||+|+|.|++++ +|+ |++||++++. ....|++|+++.+.
T Consensus 305 ~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~~~ 383 (507)
T PRK01611 305 EVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDLAL 383 (507)
T ss_pred eEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHHHH
Confidence 44555 7776 5899999999999999999999 999 9999999977 68899999999865
Q ss_pred HHH-----HHHHHHHHHHHHHHhhhcc--CCC--CCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh-h
Q 039882 819 TGI-----LRLTKEIAWMEEVLAVESS--LRT--GPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQA-A 888 (1142)
Q Consensus 819 ~~~-----~kl~n~~~~~~~~~~~~~~--~~~--~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~-~ 888 (1142)
.+. ..+++.. ++..++..... ... ..+....|+|++.+|..+...+.+++++|+++.+++. +|+|.. +
T Consensus 384 ~~~~~~~~yvqYa~a-R~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~y-l~~la~~f 461 (507)
T PRK01611 384 SFEGNNPPYVQYAHA-RICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANY-LYELAGAF 461 (507)
T ss_pred hhcCCCcHHHHHHHH-HHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHH
Confidence 331 1122211 22222222110 100 1122478999999999999999999999999999987 677754 5
Q ss_pred hHHHH
Q 039882 889 RDEYR 893 (1142)
Q Consensus 889 ~~~Y~ 893 (1142)
.++|.
T Consensus 462 ~~fY~ 466 (507)
T PRK01611 462 HSFYN 466 (507)
T ss_pred HHHHH
Confidence 55664
No 58
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=1.6e-19 Score=217.06 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=71.2
Q ss_pred CcceEEeecccch-hhHHHHHHHHHHHhcCCCCCcEEEEeeEEeec-CccccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 726 PFDLRVSGKDLIQ-NHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLN-SEKMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 726 P~Dl~~~G~D~ir-~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~-G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
-+|+.+.|+||+. .|.++......++....| .. ++|||++.+ |+|||||+||+|+|.++++.||+|++|||++..
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P--~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~ 310 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPP--EP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFAR 310 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCC--ee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhC
Confidence 3778888999999 887666654434444434 33 789999976 999999999999999999999999999998877
Q ss_pred CCCCCCccchH
Q 039882 804 GDGVDDANFVF 814 (1142)
Q Consensus 804 ~~~~~D~~fs~ 814 (1142)
..+..|++|+.
T Consensus 311 ~~~~~~~~f~~ 321 (510)
T PRK00750 311 PKPAKRLDFDV 321 (510)
T ss_pred CCCCCCCcccH
Confidence 77889999988
No 59
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.78 E-value=7.5e-20 Score=189.63 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=101.6
Q ss_pred eeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCC
Q 039882 326 TLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPK 405 (1142)
Q Consensus 326 ~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~ 405 (1142)
+.|+|++.. .+..|.|+||||+||+|++.|+++|+++.+.--...+ ..+. .|..-.....
T Consensus 10 ~~i~F~i~~-----------~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~-------~~l~--~fi~~~~~~~ 69 (185)
T PF13603_consen 10 AEIDFKIKG-----------SNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENN-------PELQ--EFIEKCKKIK 69 (185)
T ss_dssp EEEEEEBTT-----------SSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTH-------HHHH--HHHHHHHTS-
T ss_pred EEEEEEecC-----------CCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhh-------hhHH--HHHHHHhcCC
Confidence 457787764 2347999999999999999999999987543211100 1111 1111000000
Q ss_pred CC---eeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCcc
Q 039882 406 KP---TCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDE 482 (1142)
Q Consensus 406 ~~---~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~ 482 (1142)
.. ....+..|- +.|..+.||++ ++.+||..++||.++.|||+||.||+|+..||+ |+++|||+
T Consensus 70 ~~~~~~~~~~k~Gv-~tg~~aihP~t-~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~----------FAk~~~lp-- 135 (185)
T PF13603_consen 70 NSERNKDFKEKEGV-FTGLYAIHPLT-GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFE----------FAKKYNLP-- 135 (185)
T ss_dssp HHHHHHCSSS--EE-EEEEEEE-TTT-S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHH----------HHHHHT----
T ss_pred HhHhhhhccccccC-cCCCEEECCCC-CCCccEEEECceeecCCcceEEEcCCCCHHHHH----------HHHHcCCC--
Confidence 00 011235566 67999999998 688999999999999999999999999999996 67899974
Q ss_pred ccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHH
Q 039882 483 WVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLI 560 (1142)
Q Consensus 483 ~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~ 560 (1142)
+.+||...+...-.. ..+.+|.. +|+|. .|+|.||+..+|+++|++.|.
T Consensus 136 ------i~~Vi~~~~~~~~~~--------------------~~~~~~~~---~G~l~nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 136 ------IKQVIKPKDDNEEID--------------------NKQEAYTG---DGILINSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp ----------EEBSSSS---S--------------------TTSS---S-----EE-SSGGGTTSBHHHHHHHHHHHHH
T ss_pred ------eeEEEcCCCCccccc--------------------ccccCcCC---CEEEEeCCCCCCCCHHHHHHHHHHHhC
Confidence 456665432110000 01233433 67775 899999999999999999984
No 60
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.76 E-value=1.6e-17 Score=175.37 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHh--hhc-c---CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH-HhhhHHH
Q 039882 820 GILRLTKEIAWMEEVLA--VES-S---LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL-QAARDEY 892 (1142)
Q Consensus 820 ~~~kl~n~~~~~~~~~~--~~~-~---~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l-~~~~~~Y 892 (1142)
+++||||+.+|+.+... ... . ..... ....|+|+++++++++++++++|++|+|+.|++. +|.| ....++|
T Consensus 13 f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~-~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~-l~~f~~~~~~~Y 90 (183)
T cd07961 13 VLLPLWNAYRFFVTYANLDGFDPGKDDDAVAS-LNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRA-LLEFIDELTNWY 90 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccccccc-CchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHhhhhH
Confidence 88999999999876222 111 1 01112 2579999999999999999999999999999998 4544 3455899
Q ss_pred HHhcCCc----------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC----CCCeEeccCCCCCCC--CHHHHH
Q 039882 893 RLSCGAG----------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK----DGFAVKAGWPTYGTP--DLILKS 956 (1142)
Q Consensus 893 ~~~~~~~----------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~----~~sv~~~~wP~~~~~--d~~l~~ 956 (1142)
++.+++. ..++.++..++..++++|+|||||+|||||+++.+. .+||+.++||++++. |+.++.
T Consensus 91 ~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~~~~~~~~~~~~~ 170 (183)
T cd07961 91 IRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVDESLIDEELEE 170 (183)
T ss_pred hhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCCCcccccCHHHHH
Confidence 8775421 135568999999999999999999999999998542 469999999998753 888888
Q ss_pred HHHHHHHHHHHHH
Q 039882 957 ANKYLQDSIVLMR 969 (1142)
Q Consensus 957 ~~~~~~~~i~~iR 969 (1142)
.++.+++++..+|
T Consensus 171 ~~~~l~~~i~~~r 183 (183)
T cd07961 171 AMELVREIVELGR 183 (183)
T ss_pred HHHHHHHHHHhhC
Confidence 8999999988876
No 61
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.73 E-value=1.2e-16 Score=175.68 Aligned_cols=94 Identities=31% Similarity=0.417 Sum_probs=76.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAG 804 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~ 804 (1142)
-+.|+|.+|.|+++.|.-.-+..+.++.+ .+|.+..+.+|||+.+|+|||||+||++++.+++++|+++++||+++++
T Consensus 205 ~~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~- 282 (300)
T PF01406_consen 205 DTFDIHGGGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLST- 282 (300)
T ss_dssp TSEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-
T ss_pred CCceEEccccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcC-
Confidence 36899999999999999999999999998 6777889999999999999999999999999999999999999999988
Q ss_pred CCCCCccchHHHHHHH
Q 039882 805 DGVDDANFVFDTANTG 820 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~ 820 (1142)
.+..+++|+++.+.++
T Consensus 283 hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 283 HYRKPLNFSEENLEEA 298 (300)
T ss_dssp -TTS-EEE-HHHHHHH
T ss_pred CCCCccccCHHHHHHh
Confidence 6999999999987754
No 62
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.71 E-value=1e-14 Score=179.14 Aligned_cols=139 Identities=10% Similarity=0.056 Sum_probs=109.4
Q ss_pred CCCcEEEEeeEEeecCccccccCCCcCChH-----------------------HHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 756 HWPRGFRCNGHIMLNSEKMSKSTGNFRTLK-----------------------QAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 756 ~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~-----------------------~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
+.|+.+.+|||.+++|.|||||+||+|+|. ++++.+|+|++||++++.. ...|.+|
T Consensus 355 ~~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~F 433 (566)
T TIGR00456 355 YKKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVF 433 (566)
T ss_pred CCCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCcee
Confidence 567899999999999999999999999998 7788899999999999985 7899999
Q ss_pred hHHHHHH----HHHHHHHHHHHHHHHHhhhc--cCCCC----CCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 039882 813 VFDTANT----GILRLTKEIAWMEEVLAVES--SLRTG----PPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGF 882 (1142)
Q Consensus 813 s~~~~~~----~~~kl~n~~~~~~~~~~~~~--~~~~~----~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~ 882 (1142)
+++.+.. ...-+.++..++..++.... ..... ......++.++..+..+.+.+.+++++++++.+++. +
T Consensus 434 d~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~-l 512 (566)
T TIGR00456 434 DWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNY-L 512 (566)
T ss_pred cHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-H
Confidence 9986532 22345555555555554321 11100 112356778899999999999999999999999987 7
Q ss_pred HHHHhhhHHHHHhc
Q 039882 883 YDLQAARDEYRLSC 896 (1142)
Q Consensus 883 ~~l~~~~~~Y~~~~ 896 (1142)
+++....|.|.+.+
T Consensus 513 ~~La~~~N~yy~~~ 526 (566)
T TIGR00456 513 YELASLFSSFYKAC 526 (566)
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999998766
No 63
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.70 E-value=3.5e-16 Score=164.72 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC---CCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHH
Q 039882 817 ANTGILRLTKEIAWMEEVLAVESSLR---TGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDE 891 (1142)
Q Consensus 817 ~~~~~~kl~n~~~~~~~~~~~~~~~~---~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~ 891 (1142)
++.+++++||.++|+.+.+...+.-. ........|+|+++++++++++++++|++|+|++|++. +|+|. ..+|+
T Consensus 9 ~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~-i~~f~~~~l~n~ 87 (180)
T cd07960 9 VAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQA-LNNFCTVDLSAF 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHH
Confidence 45688999999999876554321100 01122578999999999999999999999999999988 66675 48899
Q ss_pred HHHhcCCcc-----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC--CCCeEeccCCCCCCC--CHHHHH
Q 039882 892 YRLSCGAGG-----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK--DGFAVKAGWPTYGTP--DLILKS 956 (1142)
Q Consensus 892 Y~~~~~~~~-----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~--~~sv~~~~wP~~~~~--d~~l~~ 956 (1142)
|++..++|. .+..+++.+++.++++|+|||||+||+||+.|.+. .++|+.++||+.++. |++++.
T Consensus 88 Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~~~~wP~~~~~~~~~~~~~ 167 (180)
T cd07960 88 YLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEWKDEELEE 167 (180)
T ss_pred HHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCeeccCCCCCcccccCHHHHH
Confidence 999877742 13458899999999999999999999999988433 478999999998763 777777
Q ss_pred HHHHHHHHHHHHHHH
Q 039882 957 ANKYLQDSIVLMRKL 971 (1142)
Q Consensus 957 ~~~~~~~~i~~iR~~ 971 (1142)
.++. +.+||..
T Consensus 168 ~~~~----~~~i~~~ 178 (180)
T cd07960 168 KWEK----LLALRDE 178 (180)
T ss_pred HHHH----HHHHHHh
Confidence 6644 4555554
No 64
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.5e-16 Score=178.46 Aligned_cols=155 Identities=18% Similarity=0.254 Sum_probs=122.9
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~ 805 (1142)
..|+|.+|.|+++.|.-.-+..+.+.++..+|-+..+.+|||+.+|+|||||+||+++..+++++|++.++||+|+++ .
T Consensus 221 ~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~-H 299 (464)
T COG0215 221 TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSS-H 299 (464)
T ss_pred CcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHH-H
Confidence 359999999999999999999999999988888999999999999999999999999999999999999999999988 6
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHH
Q 039882 806 GVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTGFYD 884 (1142)
Q Consensus 806 ~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~~~~ 884 (1142)
+...++||++.+....+.+..+.+++........ .... . .+.....++.++| ++|++..|+.. +++
T Consensus 300 YR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~---~~~~--~-------~~~~~~~~f~~al~DDfnt~~al~~-l~~ 366 (464)
T COG0215 300 YRSPLDFSEELLEEAKKALERLYNALRRLRDLAG---DAEL--A-------DLKEFEARFREALDDDFNTPKALAV-LFE 366 (464)
T ss_pred hCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcc---cccc--c-------hhHHHHHHHHHHHHhccCcHHHHHH-HHH
Confidence 9999999999988766544444444433221110 0010 0 4456667788888 58999999976 777
Q ss_pred HHhhhHHHHH
Q 039882 885 LQAARDEYRL 894 (1142)
Q Consensus 885 l~~~~~~Y~~ 894 (1142)
+....+...+
T Consensus 367 l~~~~~~~~~ 376 (464)
T COG0215 367 LAKEINRLLE 376 (464)
T ss_pred HHHHHhhhhh
Confidence 7765554433
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.64 E-value=4.9e-15 Score=177.10 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=47.3
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
.+++|.+|.+ |||.+||||++..+..|+++|+.|++|++|.|+.|+|+|
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~ 66 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNY 66 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 4699999998 999999999999999999999999999999999999999
No 66
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.63 E-value=1.1e-15 Score=156.29 Aligned_cols=122 Identities=21% Similarity=0.389 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH--HhhhHHHHHhcCCccc---------hHHHHHHHHHHHHHHhhc
Q 039882 851 DRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL--QAARDEYRLSCGAGGL---------NRDLVWRFMDVQTRLITP 919 (1142)
Q Consensus 851 D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l--~~~~~~Y~~~~~~~~~---------~~~~l~~~l~~l~~lLaP 919 (1142)
|+|++++++.++++++++|++|+|+.|++. ++.| ..++|+|++.++++.. .+.++..+++.++++|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESREAQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHHHHHHHHHHHHHHhhccCC
Confidence 899999999999999999999999999998 4554 5678999998876521 237899999999999999
Q ss_pred hhhHHHHHHHHHh----hcCCCCeEeccCCCCCCC--CHHH-HHHHHHHHHHHHHHHHHHHH
Q 039882 920 ICPHYAEYVWRVI----LKKDGFAVKAGWPTYGTP--DLIL-KSANKYLQDSIVLMRKLLQK 974 (1142)
Q Consensus 920 i~P~~aEeiw~~L----~~~~~sv~~~~wP~~~~~--d~~l-~~~~~~~~~~i~~iR~~~~~ 974 (1142)
||||+||++|+.| .+..+||+.+.||. ... +... +..++.+.+++..+|++++.
T Consensus 80 ~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~ 140 (153)
T PF08264_consen 80 FMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKE 140 (153)
T ss_dssp TSHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999654 26678999999997 432 4444 56677777788888876544
No 67
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.2e-14 Score=164.50 Aligned_cols=185 Identities=19% Similarity=0.244 Sum_probs=144.2
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~ 805 (1142)
-.|+|-+|.|+.+.|.-.-+..+.|.+...+|-+.++.+|||..+|+|||||++|+|+..+++++|.+++||++++.+ .
T Consensus 258 ~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~-~ 336 (586)
T KOG2007|consen 258 QLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLH-Q 336 (586)
T ss_pred ccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHH-H
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred CCCCccchHHHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHH
Q 039882 806 GVDDANFVFDTANTGI---LRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTG 881 (1142)
Q Consensus 806 ~~~D~~fs~~~~~~~~---~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~ 881 (1142)
+.++++|+...+..+. ..+.|++.-+..+..... +. +..+..+..++.++..+..+|..++ ++++...|+..
T Consensus 337 wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~--~~-~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~- 412 (586)
T KOG2007|consen 337 WRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK--PF-EKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA- 412 (586)
T ss_pred hcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-
Confidence 8899999998765443 334444432222222110 11 1225778899999999999999888 89999999987
Q ss_pred HHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHH
Q 039882 882 FYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRL 916 (1142)
Q Consensus 882 ~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~l 916 (1142)
+-++....|.|+...... ....+|..+...+..+
T Consensus 413 ~~~lvs~~N~~i~~~~~~-~~~~~L~~I~~yIt~~ 446 (586)
T KOG2007|consen 413 IRELVSQGNAYIRESGER-PNSALLKAIASYITKL 446 (586)
T ss_pred HHHHHhhhhHHHHHhccc-cchHHHHHHHHHHHHH
Confidence 678999999998876632 2334444443333333
No 68
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.52 E-value=1.7e-13 Score=133.45 Aligned_cols=117 Identities=41% Similarity=0.663 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHH
Q 039882 812 FVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDE 891 (1142)
Q Consensus 812 fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~ 891 (1142)
|+.+.++...+.+.++.+++....... .+.+.. ...|+|+++++++++++++++|++|+|++|++.+++++.+.+|+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~--~~~~~~-~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~ 77 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE--GELEEL-TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDW 77 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc--CCcccc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456666666555555555555533211 111223 47899999999999999999999999999999866889999999
Q ss_pred HHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 892 YRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 892 Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
|++.++++ ....++..+++.++++|+||+||+|||+|+.|
T Consensus 78 Y~~~~~~~-~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 78 YRERGGAG-MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHhCcc-chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99887776 45678999999999999999999999999864
No 69
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.48 E-value=1e-13 Score=149.65 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=97.7
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccC
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEE 182 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~ 182 (1142)
.+|-..+|||||.|||||++|.++.|+++||.|+.|++|.+..|+|.+|.+|+..|++..+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~------------------- 62 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK------------------- 62 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-------------------
Confidence 4677889999999999999999999999999999999999999999999999988854210
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccc-
Q 039882 183 SPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCD- 261 (1142)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~D- 261 (1142)
+.++++.+...+++++++||+++|
T Consensus 63 -------------------------------------------------------~~~~~~~~~~~~~~~~~~L~i~~d~ 87 (212)
T cd00671 63 -------------------------------------------------------WRKLVEESIKADLETYGRLDVRFDV 87 (212)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCcCce
Confidence 123344444667899999999988
Q ss_pred cccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccC
Q 039882 262 WRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSP 303 (1142)
Q Consensus 262 W~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p 303 (1142)
|. .|++ |...+..++..|.++|++|...--+..|+
T Consensus 88 ~~---~es~----~~~~~~~~i~~L~~~g~~~~~~g~~~~~~ 122 (212)
T cd00671 88 WF---GESS----YLGLMGKVVELLEELGLLYEEDGALWLDL 122 (212)
T ss_pred ec---chhh----hhhHHHHHHHHHHHCCCEEEeCCcEEEec
Confidence 43 3333 36688999999999999998877666654
No 70
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.38 E-value=5.1e-10 Score=137.37 Aligned_cols=135 Identities=16% Similarity=0.103 Sum_probs=97.6
Q ss_pred EEEeeEEeecCccccccCCCcCChHHHHHH-------------------------cChhhhhhhhhccCCCCCCccchHH
Q 039882 761 FRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-------------------------FSADATRFSLADAGDGVDDANFVFD 815 (1142)
Q Consensus 761 v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-------------------------yGaDalRl~la~~~~~~~D~~fs~~ 815 (1142)
.+..|+|+.+|+||||-+||+|+++|++++ -|.|++||++++. +...++.|+++
T Consensus 359 h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~-~~~~~~~Fd~d 437 (562)
T PRK12451 359 HVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKN-ERMHNIEFSLE 437 (562)
T ss_pred EEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhc-CCCCCceECHH
Confidence 466788888999999999999999999996 7799999999988 57789999998
Q ss_pred HHHHHH-H---HHHHHHHHHHHHHhhhc-cCC--CCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Q 039882 816 TANTGI-L---RLTKEIAWMEEVLAVES-SLR--TGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAA 888 (1142)
Q Consensus 816 ~~~~~~-~---kl~n~~~~~~~~~~~~~-~~~--~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~ 888 (1142)
.+-.+- + -+.-...++.+++.... ... ...+..+...-++..+..+.+.+.+++++++++.+++. ++++...
T Consensus 438 ~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~y-l~~LA~~ 516 (562)
T PRK12451 438 NMLKFEGETGPYVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKY-VLDVAQS 516 (562)
T ss_pred HHhCcCCCccHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHH
Confidence 742110 0 01111112223332211 011 00122455677889999999999999999999999988 7889999
Q ss_pred hHHHHHhcC
Q 039882 889 RDEYRLSCG 897 (1142)
Q Consensus 889 ~~~Y~~~~~ 897 (1142)
.|.|...+.
T Consensus 517 fN~fy~~~~ 525 (562)
T PRK12451 517 FNKYYGNVR 525 (562)
T ss_pred HHHHHHhCC
Confidence 999887653
No 71
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.1e-09 Score=132.77 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhC-CccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCC
Q 039882 70 LEIESKVHTWWEES-NVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFH 148 (1142)
Q Consensus 70 ~~~E~~~~~~W~~~-~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D 148 (1142)
......+++...+. +.|......+ ..+.+|-.--|+|+|+||+||+||-++.|+++|-.+..||+|.-..-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~G~~~~~~------~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvn 164 (577)
T COG0018 91 EFLAELLLEILEKGDDRYGRSKLGK------GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVN 164 (577)
T ss_pred HHHHHHHHHHHHhcccccCccccCC------CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeEC
Confidence 34555566666553 2232221111 2578888888999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhh-HHHHHHHHHHhhcch-hhHHHHHHhcC
Q 039882 149 CTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDK-FKSKKSKAAAKSGVQ-MYQWEIMRSFG 226 (1142)
Q Consensus 149 ~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~~-~~~~~i~~~~~ 226 (1142)
..|..|-..+-.++ ++|.+.. + ..........+ |+.....+....+.. ....+.++++.
T Consensus 165 D~G~Q~~~l~~~~~----~~~~e~~-~--------------~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e 225 (577)
T COG0018 165 DWGTQIGMLALSYE----KRGREAL-G--------------LTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLE 225 (577)
T ss_pred cHHHHHHHHHHHHH----Hhccccc-c--------------CCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHh
Confidence 99999988776543 3343200 0 00000111223 333333232222211 33444555555
Q ss_pred CChhHHhhhcchhhhhhcCchHHHHHHHHcccccc-c--ccceEecCCChhhHHHHHHHHHHHHHcCccee
Q 039882 227 LSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCD-W--RRSFVTTEINPFFDSFVQWQMRKLKSMGKIIK 294 (1142)
Q Consensus 227 i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~D-W--~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~ 294 (1142)
..+++..- -.+.+++....+++++.+||+.+| | ..+. .|...+..+...|.++|++|.
T Consensus 226 ~~d~~~~l---w~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~-------~~~~~~~~vv~~L~~~~~~~e 286 (577)
T COG0018 226 SGDEEAEL---WRKFVDLSLEGIKETLDRLGVKFDVYDSEGES-------FYNGKVEKVVEDLEEKGLLYE 286 (577)
T ss_pred cCChHHHH---HHHHHHHHHHHHHHHHHHhCcccceeeccchh-------hhcccHHHHHHHHHhcCCEee
Confidence 44444311 124566777889999999999999 3 3333 233367888899999999987
No 72
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.27 E-value=4.5e-11 Score=116.23 Aligned_cols=109 Identities=16% Similarity=0.297 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhc
Q 039882 817 ANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSC 896 (1142)
Q Consensus 817 ~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~ 896 (1142)
..++++|++++.....+.. ....+.+.. ...|+|+++++++++++++++|++|+|++|++. ++++.+..|.|....
T Consensus 9 ~~n~l~R~~~~~~~~~~~~--~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-i~~~~~~~n~~~~~~ 84 (117)
T cd07958 9 AYRFLNRVWRLVTELAEAL--AAPAAAAEL-SEEDKELRRKLHKTIKKVTEDIERLRFNTAIAA-LMELVNALYKYKKKD 84 (117)
T ss_pred HHHHHHHHHHHHHHHHhhc--ccccccccc-chhhHHHHHHHHHHHHHHHHHHhCCcchHHHHH-HHHHHHHHHHhhccc
Confidence 3456777777765422110 000001122 468999999999999999999999999999987 788989999998755
Q ss_pred CCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 897 GAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 897 ~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
.+ ...++.++++.++++|+|||||+||++|+.|
T Consensus 85 ~p---~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 85 AQ---HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred cc---hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 43 5678899999999999999999999999864
No 73
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.22 E-value=8.3e-11 Score=116.42 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCccc-----------hHHHHHHHHHHHHHH
Q 039882 848 TYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGL-----------NRDLVWRFMDVQTRL 916 (1142)
Q Consensus 848 ~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~-----------~~~~l~~~l~~l~~l 916 (1142)
...|+|+++++++++++++++|++|+|++|++. +++|.+.+|+|++..+||.. ...++..+++.++++
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~l 113 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAMEELEFRKALEE-IMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAIL 113 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999988 67888999999988777521 113566778999999
Q ss_pred hhchhhHHHHHHHHHh
Q 039882 917 ITPICPHYAEYVWRVI 932 (1142)
Q Consensus 917 LaPi~P~~aEeiw~~L 932 (1142)
|+|||||+||++|+.|
T Consensus 114 L~P~~P~~aeei~~~l 129 (129)
T cd07957 114 LSPFMPETAEKILDQL 129 (129)
T ss_pred hcCCCChHHHHHHHhC
Confidence 9999999999999864
No 74
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.17 E-value=2.5e-10 Score=114.47 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC--CCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh--hhHH
Q 039882 816 TANTGILRLTKEIAWMEEVLAVESSL--RTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQA--ARDE 891 (1142)
Q Consensus 816 ~~~~~~~kl~n~~~~~~~~~~~~~~~--~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~--~~~~ 891 (1142)
.+.+++.++||+.+++.......+.. +.+.. ...|+++++.++++++++.++|++|+|++|++. ++++.. .+|+
T Consensus 8 ~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~-i~~~~~~~~~N~ 85 (135)
T cd07962 8 GGRNFCNKLWNAARFVLMNLEDDDEPEEDPESL-SLADRWILSRLNKTVEEVTEALENYRFSEAATA-LYEFFWNDFCDW 85 (135)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCccccccccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHhHH
Confidence 34578899999998864321111110 11222 467999999999999999999999999999998 555765 8999
Q ss_pred HHHhcCCccc---------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 892 YRLSCGAGGL---------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 892 Y~~~~~~~~~---------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
|++..+||.. ...++.++++.++++|+|||||+||++|+.|
T Consensus 86 Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 86 YLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 9998887621 2346788899999999999999999999854
No 75
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.93 E-value=1.2e-09 Score=110.59 Aligned_cols=54 Identities=30% Similarity=0.299 Sum_probs=51.1
Q ss_pred eCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHH
Q 039882 106 NFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASAD 159 (1142)
Q Consensus 106 ~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~ 159 (1142)
..+.|||||.+||||+++.++.|+++||.|++|++|.++.|+|.+|.+|...+.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~ 55 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPAN 55 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHH
Confidence 456799999999999999999999999999999999999999999999998775
No 76
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=5.6e-09 Score=129.64 Aligned_cols=164 Identities=23% Similarity=0.307 Sum_probs=115.0
Q ss_pred ceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeee---EeEecceecCCeE
Q 039882 347 KVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCL---VELTGYDLIGLPL 423 (1142)
Q Consensus 347 ~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~---~~~~G~~L~G~~~ 423 (1142)
...+-|+||||.|++|.+.+.+.|+++.+...+.+... .+.. .|..-....+....+ .+.+|..+ |..+
T Consensus 244 ~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~-----~~~a--~fv~~~~~~~~~~~~~~~~~k~gv~~-g~~a 315 (814)
T COG0495 244 IVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQT-----PLVA--EFVDECKGTGVVESVPAHAEKDGVFL-GGYA 315 (814)
T ss_pred ceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccc-----hhHH--HHHHHhcCCCceeeeeccCCCcceec-cccc
Confidence 35789999999999999999999998766543322111 0111 121111111222222 34667664 6789
Q ss_pred ecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCC-CCCch
Q 039882 424 KSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPE-FGDKS 502 (1142)
Q Consensus 424 ~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~-~G~~~ 502 (1142)
.||+++ +.+||+.++||.+..|||+||.||||+..||+ ++.+|++ ++.++|..++ .|.
T Consensus 316 ~~p~~~-e~iPi~~a~~vl~~ygtgavm~vpahd~rd~e----------fA~~y~l--------~i~~vi~~~~~~~~-- 374 (814)
T COG0495 316 INPVNG-EKIPVWIANYVLMEYGTGAVMGVPAHDERDLE----------FATKYKL--------PIKKVIMPEGTVGK-- 374 (814)
T ss_pred cCCCCC-CcCCEEEeCcccccccccceecCCCCCchhhH----------HHHhcCC--------CeEEEEecCCCccc--
Confidence 999986 88999999999999999999999999999996 6788997 3556776543 121
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHcCCee
Q 039882 503 AERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIETGEAI 566 (1142)
Q Consensus 503 a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~g~l~ 566 (1142)
.+|. -+|+|+ .|.++|+...+|...|+..|.+.|..-
T Consensus 375 ------------------------~~~~---~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q 412 (814)
T COG0495 375 ------------------------KVYE---GEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQ 412 (814)
T ss_pred ------------------------ceec---cCceEeccccccCcchhHHHHHHHHhHHHhcCCc
Confidence 2232 267775 679999999988889999988877643
No 77
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.53 E-value=2.2e-07 Score=108.16 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=99.4
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
.++.+|-..=|+|+|+||+||+||.++.|+++|-.+-.||+|.-..-....|..+-..+..+++.....-.. ..|-
T Consensus 19 ~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~-~~~~--- 94 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLE-EDPI--- 94 (354)
T ss_dssp SEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSH-SSCH---
T ss_pred CCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcc-cccc---
Confidence 478899999999999999999999999999999999999999999999999999987776554322110000 0000
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcc-------hhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHH
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGV-------QMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKED 252 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-------~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~ 252 (1142)
..-.+.|.+......+.... .....+++..++-..+++. ..|.+++...++++
T Consensus 95 ---------------~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~-----~~~~~~~~~~~k~~ 154 (354)
T PF00750_consen 95 ---------------KHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFR-----ELWQKYILEWSKET 154 (354)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHH-----HHHHHHHHHHHHHH
T ss_pred ---------------cchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHH-----HHHHHHHHHHHHHH
Confidence 00012222222111111110 0001112222211122222 35666678889999
Q ss_pred HHHcccccc-cccceEecCCChhhHHHHHHHHHHHHHcCcceec
Q 039882 253 LKAFGLGCD-WRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKD 295 (1142)
Q Consensus 253 ~~~lG~~~D-W~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g 295 (1142)
+.++|+.+| |..+ .+ -.|...+..++..|.++|++|+.
T Consensus 155 l~~l~i~fDv~~~E---~E--s~~~~~v~~vl~~L~e~g~~~~~ 193 (354)
T PF00750_consen 155 LQRLYIRFDVWFDE---SE--SFYSGKVDEVLERLKEKGLLYES 193 (354)
T ss_dssp HHHTT---SEEEEH---CH--HHHTTHHHHHHHHHHCTTTEEEE
T ss_pred HHHHHHHhCcCccc---ch--hhhhhHHHHHHHHHHhCCcEEec
Confidence 999999999 3212 11 34556788899999999999863
No 78
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.46 E-value=1.4e-06 Score=84.09 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHH
Q 039882 816 TANTGILRLTKEIAWMEEVLAVESSLRTG--PPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYR 893 (1142)
Q Consensus 816 ~~~~~~~kl~n~~~~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~ 893 (1142)
.+.++.++++++.+++...... ..+.. ......|+|+++++++++++++++|++|+|+.|++. +++|....|+|+
T Consensus 6 ~~~~~~n~~~r~~~~~~~~~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~-i~~~~~~~n~y~ 82 (117)
T cd07375 6 QARAFLNRLYRLLSFFRKALGG--TQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQE-LFKFTNELNWYL 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhccHHH
Confidence 3456788888888775443221 11110 111467999999999999999999999999999988 688988889999
Q ss_pred HhcCCcc-------chHHHHHHHHHHHHHHhhchh
Q 039882 894 LSCGAGG-------LNRDLVWRFMDVQTRLITPIC 921 (1142)
Q Consensus 894 ~~~~~~~-------~~~~~l~~~l~~l~~lLaPi~ 921 (1142)
+..+||. ....++..++..++++|+|||
T Consensus 83 ~~~~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 83 DELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHhhHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8776652 123478889999999999996
No 79
>PLN02286 arginine-tRNA ligase
Probab=98.25 E-value=3.2e-06 Score=104.28 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=104.1
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++.+|-.-=|+|+|+||+||+||.++.|+++|-.+..||+|.-..-....|..+-..+..+.. .+|....
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~---~~~~~~~------ 186 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFE---KFPNWES------ 186 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHH---hcCcccc------
Confidence 3678999999999999999999999999999999999999999999999999999877755422 2332100
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
++...-+.+. .-|....+...........-.+++..+.-.+++...+ -...++.....+++.+.+||+.
T Consensus 187 --------~~~~~i~~l~-~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~l--w~~~~~~~~~~~~~~y~~l~V~ 255 (576)
T PLN02286 187 --------VSDQAIGDLQ-EFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAA--WAKICEISRREFEKVYQRLRVE 255 (576)
T ss_pred --------cCcccHHHHH-HHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHHHHHhCCe
Confidence 0000000000 0111100000000000011122233333333333322 1344556667889999999999
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceec
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKD 295 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g 295 (1142)
+|-. . ...|...+..++..|.++|++|..
T Consensus 256 fd~~------g-es~y~~~~~~vi~~L~~~g~~~e~ 284 (576)
T PLN02286 256 LEEK------G-ESFYNPYIPGVIEELESKGLVVES 284 (576)
T ss_pred eeec------C-chhhhhhHHHHHHHHHHCCCEEee
Confidence 9841 1 133556678889999999998753
No 80
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.81 E-value=4.5e-05 Score=83.04 Aligned_cols=37 Identities=32% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
+|.|||.||+||+++.++.++++| ++++.|..=+|.+
T Consensus 7 aPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDt 43 (240)
T cd09287 7 APNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDT 43 (240)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcC
Confidence 599999999999999999999999 5677776655554
No 81
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.71 E-value=3.3e-05 Score=88.16 Aligned_cols=86 Identities=22% Similarity=0.139 Sum_probs=42.5
Q ss_pred CcceEEeecccch---hhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCc-cccccCCCcCChHHHHHHcChhhhhhhhh
Q 039882 726 PFDLRVSGKDLIQ---NHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSE-KMSKSTGNFRTLKQAIEEFSADATRFSLA 801 (1142)
Q Consensus 726 P~Dl~~~G~D~ir---~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~-KMSKS~GNvI~p~~~i~~yGaDalRl~la 801 (1142)
-+|+=.-|||++- .+=++.. .+.-+++..| -.-+.-.|++.+|. |||||+||+++|.++++-+.+++|||+++
T Consensus 234 gVdfEp~GKDH~~~GGS~d~~~~-I~~~i~g~~p--P~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~ 310 (360)
T PF01921_consen 234 GVDFEPFGKDHASPGGSYDTSKR-IAREILGYEP--PVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMA 310 (360)
T ss_dssp T-SEEEEEHHHHCTTSHHHHHHH-HHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHH
T ss_pred CceeccCCCccCCCCCChhhHHH-HHHHHhCCCC--CCCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHc
Confidence 4667778999998 5533333 2323444432 22356788886655 99999999999999999999999999999
Q ss_pred ccCCCCCCccchHH
Q 039882 802 DAGDGVDDANFVFD 815 (1142)
Q Consensus 802 ~~~~~~~D~~fs~~ 815 (1142)
.. .+....+|+.+
T Consensus 311 ~~-~P~~~~~~~~~ 323 (360)
T PF01921_consen 311 RT-KPNKAKDFSFD 323 (360)
T ss_dssp CS--TTS-EEE--S
T ss_pred cc-CCCcceEeccC
Confidence 86 35555556554
No 82
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=9.7e-05 Score=86.51 Aligned_cols=121 Identities=19% Similarity=0.124 Sum_probs=83.8
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccccc
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~ 181 (1142)
+-|++. |++-...|||||++++.-|++.||.+.+||.|.|+.-+=.--=.|-..|.
T Consensus 24 ~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~---------------------- 79 (464)
T COG0215 24 KMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAR---------------------- 79 (464)
T ss_pred EEEecC--CccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHH----------------------
Confidence 344443 68889999999999999999999999999999998755221111111110
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc-c
Q 039882 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG-C 260 (1142)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~-~ 260 (1142)
+.|+ ++.+++++|.....++|..||+. .
T Consensus 80 ------------------------------------------~~g~---------~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 80 ------------------------------------------EEGL---------SIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred ------------------------------------------HhCC---------CHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 0111 23455666777889999999994 4
Q ss_pred ccccceEecCCChhhHHHHHHHHHHHHHcCcceec-ceeeeccC
Q 039882 261 DWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKD-VRYTIYSP 303 (1142)
Q Consensus 261 DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g-~~pv~w~p 303 (1142)
|- .+-.| +|..-+.....+|.++|+.|.. .--|+++.
T Consensus 109 ~~-~PraT-----e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv 146 (464)
T COG0215 109 DI-EPRAT-----EHIDEIIEFIEKLIEKGYAYVADDGDVYFDV 146 (464)
T ss_pred cc-cCcHh-----hCHHHHHHHHHHHHHCCceEEecCCcEEEec
Confidence 53 23333 2455667778899999999998 45787764
No 83
>PLN02286 arginine-tRNA ligase
Probab=97.67 E-value=0.00059 Score=84.53 Aligned_cols=161 Identities=11% Similarity=0.113 Sum_probs=102.3
Q ss_pred eEEeecccchhhHHHHHHHHHHHhcCCCC--C--cEEEEeeEEe-ecCccccccCCCcCChHHHHHH-------------
Q 039882 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHW--P--RGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE------------- 790 (1142)
Q Consensus 729 l~~~G~D~ir~hl~~~l~~~~al~~~~~~--P--k~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~------------- 790 (1142)
+||.|.||.. ||.-.. ...-..|..+. . =.++..|+|+ .+|+||||-+||+|+++|+|++
T Consensus 331 IyVvg~~q~~-hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~ 408 (576)
T PLN02286 331 IYVTDVGQQQ-HFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408 (576)
T ss_pred EEEEeCcHHH-HHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence 7899999874 543222 22222232111 1 2357789997 7899999999999999999983
Q ss_pred ----------------cChhhhhhhhhccCCCCCCccchHHHHHHHHH----HHHHHHHHHHHHHhhhcc----CC---C
Q 039882 791 ----------------FSADATRFSLADAGDGVDDANFVFDTANTGIL----RLTKEIAWMEEVLAVESS----LR---T 843 (1142)
Q Consensus 791 ----------------yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~----kl~n~~~~~~~~~~~~~~----~~---~ 843 (1142)
.|.||+||++++. +...+..|+++.+-.+-. -+.-...++..++..... +. .
T Consensus 409 ~~~~~~~~~~~~~a~~vg~~Airy~~L~~-~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~ 487 (576)
T PLN02286 409 KDSEWTPEELEQAAEAVGYGAVKYADLKN-NRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGK 487 (576)
T ss_pred CccccchhhHHHHHHHhhhhhhhhhhhhc-CCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCcccccccccc
Confidence 5789999999988 577899999987532100 111122222233322110 00 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHH
Q 039882 844 GPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYR 893 (1142)
Q Consensus 844 ~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~ 893 (1142)
..+..+..+.++..|.++-..+.++.++++-+..+.- +|++...-+.|-
T Consensus 488 ~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Y-l~~LA~~F~~fY 536 (576)
T PLN02286 488 IVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEY-LYNLSEKFTKFY 536 (576)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHH
Confidence 1122355677888888888888888888888888876 566665555443
No 84
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.55 E-value=0.00016 Score=87.89 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=46.6
Q ss_pred cEEEEeeEEeecCccccccC-------C--------CcCChHHHHHH-cChhhhhhhhhccCCCCCCccchHHHHHH
Q 039882 759 RGFRCNGHIMLNSEKMSKST-------G--------NFRTLKQAIEE-FSADATRFSLADAGDGVDDANFVFDTANT 819 (1142)
Q Consensus 759 k~v~~hG~vl~~G~KMSKS~-------G--------NvI~p~~~i~~-yGaDalRl~la~~~~~~~D~~fs~~~~~~ 819 (1142)
-.+..+|.+..+|.|||||+ | +..+...+.+. |.++++|.|++..+-...|..|+++.+.+
T Consensus 324 P~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~ 400 (567)
T PRK04156 324 PETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYA 400 (567)
T ss_pred ceEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 34577888888999999998 4 33455566655 88999999999887666888888876544
No 85
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00032 Score=82.37 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=78.8
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEK 180 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~ 180 (1142)
..+++-+|. .|||.+|||.++-....|++.|-.|-+|+.|.+++=||..-- . ..+++++|.
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~---------l-----Rkvp~~lp~---- 79 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP---------L-----RKVPRNLPD---- 79 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc---------c-----ccCCCCCCC----
Confidence 468888884 899999999999999999999999999999999999987521 0 133334442
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHh-hhcchhhhhhcCchHHHHHHHHcccc
Q 039882 181 EESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEIS-EFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~-~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|....+-+|+|-.+|+ -|-++..|.++|.....+.|.++|+-
T Consensus 80 -------------------------------------~~~~e~Ylg~Plt~IPdP~G~~~Sya~hf~~~f~~~l~~~Gi~ 122 (521)
T COG1384 80 -------------------------------------PEELEQYLGMPLTEIPDPFGCCDSYAEHFLRPFEEFLDEFGIE 122 (521)
T ss_pred -------------------------------------hHHHHHHcCCccccCCCCccccchHHHHHHHHHHHHHHhcCCc
Confidence 1111223466666666 34446788888889999999999987
Q ss_pred ccc
Q 039882 260 CDW 262 (1142)
Q Consensus 260 ~DW 262 (1142)
+.|
T Consensus 123 ~E~ 125 (521)
T COG1384 123 VEF 125 (521)
T ss_pred eEE
Confidence 764
No 86
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.17 E-value=0.00059 Score=82.86 Aligned_cols=29 Identities=28% Similarity=0.191 Sum_probs=25.2
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHH
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAA 132 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~R 132 (1142)
+++==||.|||.||||||++..+.+.+||
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar 122 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK 122 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 44444699999999999999999999996
No 87
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.88 E-value=0.002 Score=78.49 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=29.6
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+++==||-|||.||||||++..+...+||-+ .|.-+|.
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLR 90 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFR 90 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 3444469999999999999999999999853 5655543
No 88
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0039 Score=72.53 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.0
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHH-HcCCceeecccCC
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHR-LKGANVLLPFGFH 148 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~r-m~G~~Vl~~~G~D 148 (1142)
-.+|++. |++--.-|||||++|+--||+-|+.+ --||+|.|++++-
T Consensus 56 v~wY~CG--pTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiT 102 (586)
T KOG2007|consen 56 VTWYICG--PTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNIT 102 (586)
T ss_pred EEEEEec--CcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEeccc
Confidence 3466664 67888889999999999999999999 9999999999873
No 89
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.77 E-value=0.0025 Score=76.68 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=42.7
Q ss_pred CcEEEEeeEEeecCccccccC------CCcCC---------hHHHHH-HcChhhhhhhhhccCCCCCCccchHHHHHHHH
Q 039882 758 PRGFRCNGHIMLNSEKMSKST------GNFRT---------LKQAIE-EFSADATRFSLADAGDGVDDANFVFDTANTGI 821 (1142)
Q Consensus 758 Pk~v~~hG~vl~~G~KMSKS~------GNvI~---------p~~~i~-~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~ 821 (1142)
|+. ..-+.+...|.||||++ .+.|+ ...+-+ -|-++|+|-|++..|....|..++++.+.+..
T Consensus 232 P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~n 310 (523)
T PLN03233 232 PRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAEN 310 (523)
T ss_pred Cee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHH
Confidence 443 33455558999999997 34443 444443 37789999999988877778888776654433
No 90
>PLN02907 glutamate-tRNA ligase
Probab=96.61 E-value=0.0052 Score=77.56 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=30.1
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+++==||.|||.||||||++..+...+|| ...|.-+|.
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR 251 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR 251 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence 44545799999999999999999999998 345655544
No 91
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.47 E-value=0.0061 Score=73.57 Aligned_cols=33 Identities=42% Similarity=0.444 Sum_probs=27.2
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
||.|||.||||||++..+...+||- ..|.-+|.
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLR 38 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLR 38 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 7999999999999999999999973 35655444
No 92
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=96.42 E-value=0.0023 Score=74.86 Aligned_cols=71 Identities=25% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCcc--eEEeecccchhhHHHHHHHHHHHhcCCCC-CcEE-EEeeEEe-ecCc-cccccCCCcCChHHHHHHcChhhhh
Q 039882 725 YPFD--LRVSGKDLIQNHLTFCIYNHTAIMSQRHW-PRGF-RCNGHIM-LNSE-KMSKSTGNFRTLKQAIEEFSADATR 797 (1142)
Q Consensus 725 ~P~D--l~~~G~D~ir~hl~~~l~~~~al~~~~~~-Pk~v-~~hG~vl-~~G~-KMSKS~GNvI~p~~~i~~yGaDalR 797 (1142)
+.+| +|+.|.||.. ||........+ .+..+. .+-. +..|+++ .+|+ |||+.+||+|.++++|++-...+.+
T Consensus 236 ~~~d~~iyV~~~~q~~-hf~~l~~~l~~-lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 236 YGFDKIIYVVGADQKG-HFKQLFAILEA-LGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp SS-SEEEEEEEGGGHH-HHHHHHHHHHH-TT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred hccccEEEEecCchhh-HHHHHHHHHHH-hCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 4555 8999999974 65433322222 232111 1322 4568886 6887 8999999999999999955444444
No 93
>PLN02859 glutamine-tRNA ligase
Probab=96.36 E-value=0.0064 Score=76.00 Aligned_cols=36 Identities=33% Similarity=0.220 Sum_probs=28.7
Q ss_pred eCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 106 NFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 106 ~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+==||-|||.||||||++..+.-.+||.+ .|.-.|.
T Consensus 267 tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LR 302 (788)
T PLN02859 267 TRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLR 302 (788)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 33469999999999999999999999874 4654443
No 94
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=96.33 E-value=0.0063 Score=73.56 Aligned_cols=36 Identities=36% Similarity=0.277 Sum_probs=28.2
Q ss_pred eCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 106 NFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 106 ~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+==||.|||.||||||++..+...+||.+ .|.-+|.
T Consensus 54 tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLR 89 (574)
T PTZ00437 54 FRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLR 89 (574)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 33369999999999999999999999853 4554443
No 95
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.0095 Score=71.36 Aligned_cols=38 Identities=29% Similarity=0.235 Sum_probs=30.1
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+++==+|.|||.||||||++....-.+||-+ .|.-++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLR 47 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILR 47 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 4444469999999999999999999888754 4666654
No 96
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.22 E-value=0.013 Score=67.37 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=24.1
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|.|||.|||||+++..+.-.+|| +..|.-++.
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLR 39 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILR 39 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEe
Confidence 599999999999999999998888 445665554
No 97
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.21 E-value=0.021 Score=63.92 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|.|||.|||||+++..+.-.+|| +..|.-+|.
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR 38 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR 38 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence 599999999999999999999998 346766665
No 98
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.12 E-value=0.024 Score=61.85 Aligned_cols=33 Identities=36% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|.|||.||+||+++..+.-.+||-+ .|.-++.
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLR 39 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLR 39 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 69999999999999999999888753 5554443
No 99
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.10 E-value=0.016 Score=69.87 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=43.7
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHH-HcChhhhhhhhhcc
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLADA 803 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~~ 803 (1142)
++-.+-|.|++.+=- --+....++ | ..+..+..+.+|+ .+|.||||..|.. ...++.+ .|-+.+++=||+..
T Consensus 197 ithVIRG~d~~~~t~-~q~~l~~aL-G--~~~p~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~L 270 (513)
T PRK14895 197 ITHIIRGDDHLTNAA-RQLAIYQAF-G--YAVPSMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRL 270 (513)
T ss_pred CCEEEECchHhhhHH-HHHHHHHHc-C--CCCCeEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHHHHh
Confidence 344456777765321 111111222 2 2234677778888 8999999999875 4444443 47788888888844
No 100
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=96.05 E-value=0.025 Score=64.09 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
.|.|||.||+||+++..+.-.+||-+ .|.-++.
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLR 43 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDARAH--GGRWLLR 43 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEE
Confidence 59999999999999999988888754 3544443
No 101
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.02 E-value=0.029 Score=61.18 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=27.5
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|.|||.||+||+++..+.-.+||-+ .|.-++.
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLR 39 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARKY--GGKFILR 39 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 69999999999999999999988864 5655554
No 102
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.98 E-value=0.014 Score=70.71 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=41.6
Q ss_pred EEEeeEEeecCccccccCCCc------C---------ChHHHHH-HcChhhhhhhhhccCCCCCCccchHHHHHH
Q 039882 761 FRCNGHIMLNSEKMSKSTGNF------R---------TLKQAIE-EFSADATRFSLADAGDGVDDANFVFDTANT 819 (1142)
Q Consensus 761 v~~hG~vl~~G~KMSKS~GNv------I---------~p~~~i~-~yGaDalRl~la~~~~~~~D~~fs~~~~~~ 819 (1142)
+...|++..+|.||||+++.. + +...+.+ -|-++|+|=|++..|-...|..++++.+.+
T Consensus 258 ~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~ 332 (554)
T PRK05347 258 QYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLES 332 (554)
T ss_pred eEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHH
Confidence 345677778999999998651 2 3444444 378899998888887666777777765543
No 103
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=95.91 E-value=0.021 Score=67.73 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=33.3
Q ss_pred EEEEeeEEe-ecCccccccCCCcCChHHHHH-HcChhhhhhhhhccC
Q 039882 760 GFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLADAG 804 (1142)
Q Consensus 760 ~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~~~ 804 (1142)
.+..+++++ .+|+||||..|.+ +..++.+ .|-+++++=|++..+
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~~G~~PeAi~n~l~~lG 266 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNAS-SVKWLLEQGFLPSAIANYLILLG 266 (433)
T ss_pred eEEEeeeeeCCCCCeeecccChh-hHHHHHHCCCCHHHHHHHHHHhC
Confidence 566667776 7999999998853 5555554 478899998888775
No 104
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.86 E-value=0.015 Score=73.35 Aligned_cols=38 Identities=34% Similarity=0.175 Sum_probs=29.0
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+++==||.|||.||||||++..+...+||- ..|.-+|.
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR 69 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLR 69 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 445557999999999999999999988874 24544443
No 105
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.64 E-value=0.04 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHH
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAY 133 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry 133 (1142)
+|.|||.||+||+++.++.-.++|-
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~ 31 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK 31 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 6999999999999999999888874
No 106
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.56 E-value=0.034 Score=67.39 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=45.6
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
++..+-|.|++..= ...+....++ +. + +..+..+.+++ .+|.||||.+| .++..++++. |-+.+++-+++..+
T Consensus 198 ithvIrG~d~~~~t-~~~~~l~~aL-g~-~-~p~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG 272 (470)
T TIGR00464 198 ITHVIRGEDHISNT-PKQILIYQAL-GW-K-IPVFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLG 272 (470)
T ss_pred CCEEEECchhhcCH-HHHHHHHHHc-CC-C-CCeEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcC
Confidence 34455677777632 1111111222 21 2 23455555544 79999999999 8899999887 46889998888654
No 107
>PLN02627 glutamyl-tRNA synthetase
Probab=95.34 E-value=0.051 Score=65.85 Aligned_cols=44 Identities=30% Similarity=0.287 Sum_probs=32.9
Q ss_pred EEEEeeEEe-ecCccccccCCCcCChHHHHH-HcChhhhhhhhhccC
Q 039882 760 GFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLADAG 804 (1142)
Q Consensus 760 ~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~~~ 804 (1142)
.+..+.+++ .+|+||||..|. +...++.+ -|-+++++=|++..+
T Consensus 279 ~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LG 324 (535)
T PLN02627 279 RFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLG 324 (535)
T ss_pred eEEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 456667777 789999999865 46666655 478899998888765
No 108
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=95.11 E-value=0.061 Score=64.24 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=33.4
Q ss_pred EEEEeeEEe-ecCccccccCCCcCChHHHHH-HcChhhhhhhhhccC
Q 039882 760 GFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLADAG 804 (1142)
Q Consensus 760 ~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~~~ 804 (1142)
.+..+++++ .+|+|+||..|. ++..++.+ .|-+++++=|++..+
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 455567777 699999999876 46666665 488999998888764
No 109
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=94.77 E-value=0.012 Score=67.80 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+..+++-+|. .|||.+|||+.+-.+..|+++|-.|.+|.+|-+++.||..-- + | ++++++|+. .
T Consensus 22 ~~~~v~~sG~-sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~--------l-R-----KvP~~~p~~-~ 85 (360)
T PF01921_consen 22 KEPYVFASGI-SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP--------L-R-----KVPPNVPNP-E 85 (360)
T ss_dssp -SEEEEEEEE---SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-------------------TTS-CC--
T ss_pred CccEEEecCC-CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc--------c-c-----CCCCCCChH-H
Confidence 4678888884 899999999999999999999999999999999999998421 0 0 223233320 0
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHh-hhcchhhhhhcCchHHHHHHHHccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEIS-EFQEPEKWLNFFPPLAKEDLKAFGL 258 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~-~f~~p~~w~~~~~~~~~~~~~~lG~ 258 (1142)
. + +-+|.|-..|+ -|-....|.++|.....+.|..||+
T Consensus 86 --~----------------~-----------------------~ylg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gi 124 (360)
T PF01921_consen 86 --L----------------E-----------------------KYLGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGI 124 (360)
T ss_dssp --C----------------C-----------------------CCTTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT-
T ss_pred --H----------------H-----------------------HhcCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCC
Confidence 0 0 01233333333 1223467889999999999999999
Q ss_pred ccccccceEecCCChhhHHHHHHHH
Q 039882 259 GCDWRRSFVTTEINPFFDSFVQWQM 283 (1142)
Q Consensus 259 ~~DW~r~y~T~d~np~y~~~v~~~F 283 (1142)
-+++-+..-.. .+-.|...+..++
T Consensus 125 e~e~~s~te~Y-~sG~y~~~i~~aL 148 (360)
T PF01921_consen 125 EYEFISQTEMY-RSGRYDEQIRTAL 148 (360)
T ss_dssp --EEEECCCCC-CTTTTHHHHCHHH
T ss_pred ceEEEeHHHhh-hCCchHHHHHHHH
Confidence 88764332222 2345666665544
No 110
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=94.62 E-value=0.062 Score=65.85 Aligned_cols=43 Identities=30% Similarity=0.202 Sum_probs=32.0
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
+...=+ +|.|||.||||||++.++.+.+|| +|+.-|..=+|.+
T Consensus 101 ~V~tRF-aPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDT 143 (567)
T PRK04156 101 KVVMRF-APNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDT 143 (567)
T ss_pred eEEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccC
Confidence 344444 699999999999999999999999 3455555444443
No 111
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=94.24 E-value=0.13 Score=62.51 Aligned_cols=72 Identities=22% Similarity=0.185 Sum_probs=44.8
Q ss_pred ceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 728 DLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 728 Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
+..+-|.|++.+-.. .+....++ |. .. ..+..+.+++ .+|.||||..| .++..++++. |-+.+++-|++..+
T Consensus 209 thvIrG~d~~~~t~~-q~~l~~al-G~-~~-p~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG 282 (476)
T PRK01406 209 THVIRGEDHLSNTPK-QILLYEAL-GW-EV-PVFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLG 282 (476)
T ss_pred CEEEECchhhcCHHH-HHHHHHHh-CC-CC-CeEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhC
Confidence 444567776653211 11111222 21 12 3444556654 79999999999 7899999886 57888888887653
No 112
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.21 E-value=0.055 Score=54.73 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=35.1
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccC
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKST 778 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~ 778 (1142)
.|+++.|+||.. |+........++.. ..+...+.+|+++ .+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~--~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGG--PARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCC--CCCceEEEeCCeECCCCCcCCCCC
Confidence 699999999999 65555544444432 2234567789998 4779999995
No 113
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.20 E-value=0.069 Score=60.14 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhc-CCCCCcEEEEeeEEe-ecCccccccCCCcCC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMS-QRHWPRGFRCNGHIM-LNSEKMSKSTGNFRT 783 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~-~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~ 783 (1142)
+.+|+.+.|.||..++ ...+ ..+-.- ..+-|..+.+ -++. .+|.|||||.||.++
T Consensus 152 ~~~~~vp~G~DQ~~~i-~l~r--dla~r~n~~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~ 208 (273)
T cd00395 152 EGCDIQPGGSDQWGNI-TLGR--ELARRFNGFTIAEGLTI-PLVTKLDGPKFGKSESGPKW 208 (273)
T ss_pred cCCcEEEecHHHHHHH-HHHH--HHHHHhCCCCCCeEEee-ccccCCCCCcCCCCCCCCcc
Confidence 4579999999998754 3332 222111 1123445444 5555 799999999999974
No 114
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.22 Score=59.22 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=45.3
Q ss_pred Hhc-CCCCCcEEEEeeEEeecC-ccccccCCCcCChHHHHHHcChhhhhhhhhccCC-CCCCccchH
Q 039882 751 IMS-QRHWPRGFRCNGHIMLNS-EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD-GVDDANFVF 814 (1142)
Q Consensus 751 l~~-~~~~Pk~v~~hG~vl~~G-~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~-~~~D~~fs~ 814 (1142)
+++ ..|.| ++-.|++++| .|||||+||+|++.|+++-+.++.|||+++...+ ..-|++|+.
T Consensus 256 i~g~~pP~~---~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~ 319 (521)
T COG1384 256 IFGYEPPVP---FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDL 319 (521)
T ss_pred hcCCCCCCC---CceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCcceecCCCC
Confidence 445 44443 4556777555 9999999999999999999999999999998832 234444443
No 115
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=93.59 E-value=0.049 Score=64.74 Aligned_cols=58 Identities=19% Similarity=0.043 Sum_probs=35.7
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~ 786 (1142)
+.+|+.+.|.||..++ ...+=...-+.. ..| ..+++-.+. .+|.|||||.||.|+..+
T Consensus 185 ~~~~iq~gG~DQ~~ni-~~grdl~~r~~~--~~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 185 EDVDLQIGGTDQWGNI-LMGRDLQRKLEG--EEQ-FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCCEEEecHHHHHHH-HHHHHHHHHhCC--CCc-eEeccCCccCCCCCccCCCCCCceeccC
Confidence 5799999999998765 222211111111 222 222333343 689999999999987654
No 116
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.56 E-value=0.076 Score=61.35 Aligned_cols=58 Identities=26% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHH---HHhcC-CCCCcEEEE--eeEEe-ecCccccccCCCcCC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHT---AIMSQ-RHWPRGFRC--NGHIM-LNSEKMSKSTGNFRT 783 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~---al~~~-~~~Pk~v~~--hG~vl-~~G~KMSKS~GNvI~ 783 (1142)
|.+|+...|.||...+ -.+.=... ..++. -+.|..++. +-++. .+|+|||||.+|.|.
T Consensus 148 ~~~d~VpvG~DQ~qhl-eLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~ 212 (332)
T PRK12556 148 FQATHVPVGKDQIQHI-EIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIP 212 (332)
T ss_pred ccCCEEEeccccHHHH-HHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccc
Confidence 6689999999999744 22221111 11111 134555542 33343 789999999999874
No 117
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.25 E-value=0.1 Score=58.75 Aligned_cols=54 Identities=26% Similarity=0.119 Sum_probs=34.7
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRT 783 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~ 783 (1142)
-+|+.+.|.||..++ ..++=...-+ +. .. -..++|.++. .+|+|||||.+|.++
T Consensus 151 ~~~l~~~G~DQ~~~i-~~~rd~a~r~-~~-~~-~~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 151 DVDLQLGGSDQRGNI-TLGRDLIRKL-GY-KK-VVGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred hCCeeEecHHHHHHH-HHHHHHHHHh-CC-CC-cEEEeeccccCCCCCcccCCCCCccc
Confidence 359999999999654 3333211111 11 11 2345666666 799999999999984
No 118
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.23 E-value=0.11 Score=61.43 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcCC--CCCcEEEE-ee-EEe-ecCccccccCCCcCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQR--HWPRGFRC-NG-HIM-LNSEKMSKSTGNFRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~~--~~Pk~v~~-hG-~vl-~~G~KMSKS~GNvI~p 784 (1142)
|-+|+...|.||.+ |+-.+.=...- .++.. +.|..++. |+ .|. ++|+|||||.+|.|..
T Consensus 147 y~ad~VPVG~DQ~q-HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L 213 (431)
T PRK12284 147 FNAHKVPVGRDQIQ-HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPL 213 (431)
T ss_pred cCCCEEEEcchhHH-HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeee
Confidence 56899999999987 43333211111 12221 34555553 33 344 6899999999998853
No 119
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=0.91 Score=53.76 Aligned_cols=82 Identities=22% Similarity=0.149 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 71 ~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
-++.-.+..|++...|.... ... .++-+|-+--|+.+-..|+||.++-++.-+++.-++-.|+.|.-+--.-.-
T Consensus 86 ~~k~~l~~i~~~~~~~g~~~-~~~-----~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDW 159 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKNE-LGS-----GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDW 159 (567)
T ss_pred HHHHHHHHHHHHhcccCccc-ccc-----CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHH
Confidence 45666677788777776652 221 478899999999999999999999999999999999999999877655555
Q ss_pred CchhHHHH
Q 039882 151 GMPIKASA 158 (1142)
Q Consensus 151 GlPIe~~a 158 (1142)
|.-+-..+
T Consensus 160 GkQFgll~ 167 (567)
T KOG1195|consen 160 GKQFGLLA 167 (567)
T ss_pred HHHhhHHh
Confidence 66555444
No 120
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=92.06 E-value=0.099 Score=62.22 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=41.7
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
+.+|+.+.|.||.. |+...+=...-+ +..+ -..++.-.+. .+|+|||||.||.|+..+ ++..++.++=++.+.
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~-~~~~--~~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRY-GGKP--QFGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHh-CCCC--eEEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 68999999999996 544433221111 2111 1112222333 689999999999998764 123344444444443
No 121
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=91.66 E-value=0.16 Score=57.80 Aligned_cols=59 Identities=24% Similarity=0.164 Sum_probs=34.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCC--CCCcEEEEeeEEe-ecCc-cccccCCC-cCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIM-LNSE-KMSKSTGN-FRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~--~~Pk~v~~hG~vl-~~G~-KMSKS~GN-vI~p~ 785 (1142)
+-+|+.+.|.||..++ ..+.-...-+.... +-|..+ ++-++. .+|. |||||.+| .|++.
T Consensus 148 l~~~~~~~G~DQ~~~~-~l~rd~a~k~~~~~~~~~p~~l-~~~~l~~l~G~~KMSKS~~ns~I~L~ 211 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHI-ELARDLARKFNYKEIFPKPAGL-TSPLLPGLDGQKKMSKSDPNSAIFLD 211 (292)
T ss_dssp TTHSEEEEEGGGHHHH-HHHHHHHHHHTHHSTSSS-EEE-EETCBBSTTSSSBTTTTTTGGS-BTT
T ss_pred eccccccccchHHHHH-HHHHHHHhhhcccccccCchhe-eeccccccCCccccCccCCccEEEEe
Confidence 4578999999999755 33321111111111 233444 444555 7898 99999999 66554
No 122
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.39 E-value=0.13 Score=59.41 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHH-----hcCC--CCCcEEEEee-EEe-ecC-ccccccCCCcCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAI-----MSQR--HWPRGFRCNG-HIM-LNS-EKMSKSTGNFRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al-----~~~~--~~Pk~v~~hG-~vl-~~G-~KMSKS~GNvI~p~ 785 (1142)
|.+|+...|.||...+ .+..-.|- ++.. +.|+.++.++ ++. ++| .|||||.+|.|...
T Consensus 141 ~~~d~vpvG~DQ~~h~---~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~ 208 (333)
T PRK12282 141 FKATLVPVGDDQLPMI---EQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLS 208 (333)
T ss_pred hCCCEEEeccccHHHH---HHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeee
Confidence 6789999999998754 22222221 2211 3456555443 343 566 89999999988643
No 123
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.34 E-value=0.3 Score=56.61 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHH-hcCCCCCcEEEEeeEEe-ecCc--cccccC-CCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAI-MSQRHWPRGFRCNGHIM-LNSE--KMSKST-GNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al-~~~~~~Pk~v~~hG~vl-~~G~--KMSKS~-GNvI~p~~ 786 (1142)
|.+|+.+.|.||...+ ..+. -.+- ++. .-| ..+.|.++. ++|. |||||. ||.|.+.|
T Consensus 167 ~~ad~vpvG~DQ~~h~-~l~R--dia~~~n~-~~p-~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIH-MLAR--EVLPKLGY-KKP-VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHH-HHHH--HhhHhcCC-CCc-eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 5799999999999744 2222 2221 111 222 334466666 6776 999999 99987543
No 124
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=89.27 E-value=0.33 Score=57.15 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=34.6
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCc-EEEEeeEEe-e-cC-ccccccCCC-cCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPR-GFRCNGHIM-L-NS-EKMSKSTGN-FRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk-~v~~hG~vl-~-~G-~KMSKS~GN-vI~p~~ 786 (1142)
+-+|+.+.|.||...+. +..-.+- ..+..++ .++.|.++. + +| .|||||.+| .|...|
T Consensus 209 l~adivpvG~DQ~~~~~---LaRdia~-~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNM---LAREYCD-KKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHH---HHHHHHH-HhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 56899999999987552 2222221 1111123 344566665 5 45 799999988 466543
No 125
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=89.05 E-value=1.4 Score=48.18 Aligned_cols=73 Identities=23% Similarity=0.207 Sum_probs=45.2
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHH-HcChhhhhhhhhccC
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLADAG 804 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~~~ 804 (1142)
++..+-|.|++.+-...-.+. .++ +. +.| .+..++.++ .+|+|||||.|+ ++..++.+ .|.+++++-|++..+
T Consensus 110 IThViRG~D~l~st~~q~~l~-~~L-g~-~~P-~~~H~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 110 ITHVLRGEDHLDNTPIQDWLY-EAL-GW-EPP-RFYHFPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred CCEEEECHhhhhchHHHHHHH-HHc-CC-CCC-eEEEeeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 556677888877532222111 122 21 233 344556665 688999999998 45666544 388899999988765
No 126
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.37 E-value=0.36 Score=56.56 Aligned_cols=59 Identities=19% Similarity=0.051 Sum_probs=35.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHH---hcCCCCCcEEEEeeEEe-ecCccccccC-CCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAI---MSQRHWPRGFRCNGHIM-LNSEKMSKST-GNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al---~~~~~~Pk~v~~hG~vl-~~G~KMSKS~-GNvI~p~~ 786 (1142)
|-+++...|.||.. |+-.+.=...-+ ++ -+-|..++ |-++. ++|.|||||. +|.|.+.|
T Consensus 202 ~~~~lvPvG~DQ~~-h~~ltRdiA~r~n~~~g-f~~P~~l~-~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDP-HIRLTRDIAERLHGGYG-FIKPSSTY-HKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHH-HHHHHHHHHHHHhhhcC-CCCchhHh-hhcccCCCCCcCCCCCCCCeeeccC
Confidence 45789999999976 433333222211 12 12344433 44665 7899999998 57876543
No 127
>PLN02563 aminoacyl-tRNA ligase
Probab=86.73 E-value=1.1 Score=58.97 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=60.8
Q ss_pred HhhhHHHHHHHHHcCCeeeeecc----------------CccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCc
Q 039882 549 QDAKPLIRSKLIETGEAIMYSEP----------------EKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMN 612 (1142)
Q Consensus 549 ~ea~~~I~~~L~~~g~l~~~~e~----------------~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~ 612 (1142)
.+.-..+...|-++|++.....+ ..+.|+|||.+++.+-..|||++++ .+++++++.++...
T Consensus 211 ~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it--~ya~~L~~~l~~~~ 288 (963)
T PLN02563 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKIT--AYADRLLEDLDDLD 288 (963)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecc--hhHHHHHHhhhhcC
Confidence 34556777788888887532111 2356899999999999999999997 69999999999888
Q ss_pred eeCchhhhhHHHhhhc
Q 039882 613 LYHDENRHGFEHTLGW 628 (1142)
Q Consensus 613 ~~P~~~r~~~~~~i~~ 628 (1142)
.|+.+++.-.+||..
T Consensus 289 -wp~~v~~~q~nwiG~ 303 (963)
T PLN02563 289 -WPESIKEMQRNWIGR 303 (963)
T ss_pred -CCHHHHHHHHHhccc
Confidence 599999988888764
No 128
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.57 E-value=0.48 Score=55.59 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=22.2
Q ss_pred CCCcEEEE-eeEEe-ecCccccccCCCcCChHH
Q 039882 756 HWPRGFRC-NGHIM-LNSEKMSKSTGNFRTLKQ 786 (1142)
Q Consensus 756 ~~Pk~v~~-hG~vl-~~G~KMSKS~GNvI~p~~ 786 (1142)
+.|..++. +.+|. ++|+|||||.+|.|...|
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC
Confidence 44665553 45566 799999999999887544
No 129
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=86.08 E-value=0.42 Score=55.33 Aligned_cols=59 Identities=31% Similarity=0.263 Sum_probs=33.0
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHh---cC-CCCCcEEEEeeE---Ee-ecCccccccCCC-cCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIM---SQ-RHWPRGFRCNGH---IM-LNSEKMSKSTGN-FRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~---~~-~~~Pk~v~~hG~---vl-~~G~KMSKS~GN-vI~p~ 785 (1142)
|-+|+...|.||.. |+..+.=...-+. +. -+-|..+ .|.+ +. .+|+|||||.+| .|...
T Consensus 138 ~~~d~vpvG~DQ~~-h~elaRdia~r~n~~~~~~f~~P~~l-~~~~~~~l~gl~~~KMSKS~~~s~I~L~ 205 (328)
T TIGR00233 138 YQADLVPVGIDQDQ-HLELTRDLAERFNKKFKNFFPKPESL-ISKFFPRLMGLSGKKMSKSDPNSAIFLT 205 (328)
T ss_pred cCCCeeecccccHH-HHHHHHHHHHHhhhhcCcccCCChhh-hccccCCCCCCCCCcCCCCCCCCeEeec
Confidence 46889999999976 4333321111111 10 1234443 3334 22 467899999997 66543
No 130
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.63 E-value=0.45 Score=55.22 Aligned_cols=61 Identities=26% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHH---hcC-CCCCcEEEE-e-eEEe-ecCc--cccccCC---CcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAI---MSQ-RHWPRGFRC-N-GHIM-LNSE--KMSKSTG---NFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al---~~~-~~~Pk~v~~-h-G~vl-~~G~--KMSKS~G---NvI~p~~ 786 (1142)
|-+|+...|.||...+ ..+.=...-+ ++. -+.|..++. + ..+. ++|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~-elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHL-ELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHH-HHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 5789999999997644 2222111111 111 134555553 2 3344 6776 9999999 7886543
No 131
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.16 E-value=2.1 Score=50.90 Aligned_cols=46 Identities=28% Similarity=0.210 Sum_probs=30.0
Q ss_pred hHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceeccee
Q 039882 247 PLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRY 298 (1142)
Q Consensus 247 ~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~p 298 (1142)
..+.+++.-||+--| -+|... .+| ..+...=.+|.+.|..|-...|
T Consensus 253 ~~IleDl~~LgIkpd----~~TyTS-DyF-~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPD----RVTYTS-DYF-DEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred HHHHHHHHHhCcCcc----eeeech-hhH-HHHHHHHHHHHhcCcccccCCc
Confidence 457889999999988 234331 334 4455556778888887655544
No 132
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=85.06 E-value=0.63 Score=52.69 Aligned_cols=60 Identities=22% Similarity=0.094 Sum_probs=35.3
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcC----CCCCcEEEEe--eEEe-ecC--ccccccCC-CcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ----RHWPRGFRCN--GHIM-LNS--EKMSKSTG-NFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~----~~~Pk~v~~h--G~vl-~~G--~KMSKS~G-NvI~p~~ 786 (1142)
|-+|+...|.||...+ ..+.=...-+... -+.|..+ .| .++. .+| .|||||.| |.|...|
T Consensus 136 ~~~~~vpvG~DQ~~h~-~l~Rdia~r~n~~~~~~~~~P~~l-~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLVPVGIDQDPHL-ELTRDIARRFNKLYGEIFPKPAAL-LSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEEeeccccHHHH-HHHHHHHHHhccccccccCCCeee-ccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 4578999999997644 3333222111110 1334444 44 5555 555 59999999 9887654
No 133
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.70 E-value=0.52 Score=55.53 Aligned_cols=51 Identities=24% Similarity=0.226 Sum_probs=33.6
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe--ecCccccccCCCc
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM--LNSEKMSKSTGNF 781 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl--~~G~KMSKS~GNv 781 (1142)
-.|+.++|.||-.+|+.=-=+... .+ ..+.+.+|.-++ .+|.|||||.||.
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl~rr--~g---~~~~~~lt~PLL~~ldG~KmgKs~~~a 232 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDLIRR--LG---QKKVVGLTTPLLTGLDGKKMGKSEGGA 232 (401)
T ss_pred ccchhcCChHHHHHHHHHHHHHHH--hC---CCCeEEEEeccccCCCCCcccccCCCc
Confidence 367999999999988422212222 11 135555555554 7999999999994
No 134
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=84.59 E-value=7.7 Score=39.75 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=63.6
Q ss_pred HcChhhhhhhhhccCCCCCCccchHHHHHHH----HHHHHHHHHHHHHHHhhhcc-------CCCCCCCChhhHHHHHHH
Q 039882 790 EFSADATRFSLADAGDGVDDANFVFDTANTG----ILRLTKEIAWMEEVLAVESS-------LRTGPPSTYADRVFENEI 858 (1142)
Q Consensus 790 ~yGaDalRl~la~~~~~~~D~~fs~~~~~~~----~~kl~n~~~~~~~~~~~~~~-------~~~~~~~~~~D~~il~~l 858 (1142)
+.|.|++||.+++. ....++.|+++.+..+ .--+...+.++..++...+. ..........++.++..+
T Consensus 2 ~i~~~a~~~~~l~~-~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l 80 (156)
T cd07956 2 EVGVGAVKYQDLSN-KRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLL 80 (156)
T ss_pred ccchhHHHHHHHhc-CCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHH
Confidence 46889999999988 4667889998864321 00111122222222222110 000111123466677778
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhc
Q 039882 859 NIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSC 896 (1142)
Q Consensus 859 ~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~ 896 (1142)
..+-+.+..++.+.+++.++.. ++++....+.|.+.+
T Consensus 81 ~~~~~~i~~~~~~~~~~~l~~~-l~~L~~~~~~ffd~v 117 (156)
T cd07956 81 AKFPEVVKNAAETLEPHTIATY-LFDLAHAFSKFYNAC 117 (156)
T ss_pred HHhHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHhcC
Confidence 8888888888999999999987 667776666665443
No 135
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=83.28 E-value=1 Score=53.15 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=32.1
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChH
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLK 785 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~ 785 (1142)
-+|+.+.|.||..+ +...+-...-+.+...+ . ++.-.+. .+|.|||||.||.|+..
T Consensus 177 ~~di~~gG~DQ~~n-i~~g~dLar~~~~~~~~--~-~t~pLl~~~dg~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 177 NVDLQIGGSDQWGN-IRKGRDLIRRNLPSLGF--G-LTVPLLTPADGEKMGKSGGGAVSLD 233 (377)
T ss_pred cCCeeEecchhHHH-HHHHHHHHHHhcCCCce--e-eceeeecCCCCCCccCCCCCcccCC
Confidence 47899999999653 22222222111122111 1 2222333 58999999999988754
No 136
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.26 E-value=0.93 Score=51.58 Aligned_cols=58 Identities=28% Similarity=0.250 Sum_probs=33.7
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcCC-CCCcEEEEee--EEe-ecC-ccccccCCC-cCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQR-HWPRGFRCNG--HIM-LNS-EKMSKSTGN-FRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~~-~~Pk~v~~hG--~vl-~~G-~KMSKS~GN-vI~p 784 (1142)
|-+++..-|.||-. |+=.+.=...- .++.. +.|.. +.|. ++. ++| .|||||.+| +|.+
T Consensus 144 ~~a~~VPVG~DQ~q-HleLtRDiA~rfn~~y~~~f~~P~~-~~~~~~~i~gL~g~~KMSkS~~ns~I~L 210 (314)
T COG0180 144 YQATLVPVGEDQDQ-HLELTRDIARRFNHLYGEVFPLPEA-LISKVARLPGLDGPGKMSKSDPNSAIFL 210 (314)
T ss_pred ccCCeeccCCCchH-HHHHHHHHHHHHHhhcCCccCCccc-cccCCCcccCCCCCCcccccCCCCeeec
Confidence 55788889999987 43222211111 11111 23333 3444 776 788 899999999 6653
No 137
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=83.09 E-value=0.86 Score=59.46 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=48.3
Q ss_pred cccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcC
Q 039882 574 RVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWL 629 (1142)
Q Consensus 574 ~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l 629 (1142)
..|||||.+++.+-.+|||++++ ++++++++.++....+|+.+++...+||..-
T Consensus 171 g~~~~~g~~v~~~~~~~~f~~i~--~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 171 GRSWRGGTPVEKKELKQWFLKIT--AYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred CccccCCCcceEeecceeEEehh--hhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 46899999999999999999996 6999999999998889999999888887643
No 138
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=81.00 E-value=4.6 Score=49.19 Aligned_cols=33 Identities=30% Similarity=0.271 Sum_probs=26.7
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|-|||.|||||+++..+.-.+||- ..|.-++.
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLR 39 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAKH--TGGEFILR 39 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 5999999999999999999988883 34554444
No 139
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=79.01 E-value=3.6 Score=53.64 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=61.4
Q ss_pred HhhhHHHHHHHHHcCCeeeee----------------ccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCc
Q 039882 549 QDAKPLIRSKLIETGEAIMYS----------------EPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMN 612 (1142)
Q Consensus 549 ~ea~~~I~~~L~~~g~l~~~~----------------e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~ 612 (1142)
.++-..+...|.++|++.... |-+...|+|||.+++.+..+|||++++ ++++++++.++.+.
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~--~~~~~L~~~l~~~~ 209 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKIT--DYADELLDDLDKLE 209 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecc--hhHHHHHHHHHhhc
Confidence 345556777788888775321 112356899999999999999999996 69999999998774
Q ss_pred eeCchhhhhHHHhhhcCCce
Q 039882 613 LYHDENRHGFEHTLGWLNQW 632 (1142)
Q Consensus 613 ~~P~~~r~~~~~~i~~l~DW 632 (1142)
=+|+.++..-.+||....-+
T Consensus 210 ~w~~~v~~~~~~wig~~~~~ 229 (805)
T PRK00390 210 DWPEKVKTMQRNWIGRSEGA 229 (805)
T ss_pred cCcHHHHHHHHhhccccceE
Confidence 46999998888887654443
No 140
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.77 E-value=1.7 Score=50.34 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
.++-++.+.-|+.--.+|+||.++-+|.|.++|-....|+.|+..
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~ 231 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRR 231 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEee
Confidence 466788999999999999999999999999999999999999875
No 141
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.78 E-value=4.6 Score=44.53 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHH-HcChhhhhhhhhc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE-EFSADATRFSLAD 802 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~-~yGaDalRl~la~ 802 (1142)
+-++..+-|.|++..=- ..+....++ +. +.| .+..++.++ .+|.||||+.|| .+...+.+ .+-+.+++-+++.
T Consensus 117 ~~ithViRG~D~~~~t~-~q~~l~~aL-g~-~~p-~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 117 MGITHVIRGEEHLSSTP-KQILLYEAL-GW-EPP-KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred cCCCEEEEChhhhhChH-HHHHHHHHc-CC-CCC-ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHH
Confidence 45778888999887421 111111222 22 223 334445554 799999999999 45555443 3677888888886
Q ss_pred cC
Q 039882 803 AG 804 (1142)
Q Consensus 803 ~~ 804 (1142)
.+
T Consensus 192 lG 193 (239)
T cd00808 192 LG 193 (239)
T ss_pred cC
Confidence 54
No 142
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.89 E-value=1.5 Score=53.60 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=39.9
Q ss_pred ccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhh
Q 039882 575 VMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLG 627 (1142)
Q Consensus 575 v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~ 627 (1142)
..||||.+++-+...||||+.+ .+.+++++.|+...=.|+ +++.-.+||.
T Consensus 200 ~SWRSGA~VEkK~LrQWfiktt--aYAk~L~d~L~~L~~W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 200 CSWRSGAKVEKKKLRQWFIKTT--AYAKRLLDGLETLPEWPE-VKDMQRNWIG 249 (876)
T ss_pred ccccccchhhHHHHHHHHhhhh--HHHHHHHHHHHhhhhhhh-HHHHHHhhcc
Confidence 3589999999999999999996 699999999997644455 6665556664
No 143
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=70.31 E-value=3.6 Score=51.91 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=33.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEE-eeEEe-ec-C-ccccccC-CCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRC-NGHIM-LN-S-EKMSKST-GNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~-hG~vl-~~-G-~KMSKS~-GNvI~p~~ 786 (1142)
|.+|+...|.||...+ ..+.=... .++ ..|+.++. |.++. ++ | .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~-eLaRdia~-~~g--~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVN-MLAREYCD-LIG--RKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHH-HHHHHHHH-HhC--CCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 5688999999998754 22221111 122 22233443 44443 44 3 6999999 68887543
No 144
>PLN02486 aminoacyl-tRNA ligase
Probab=68.39 E-value=3.7 Score=48.49 Aligned_cols=55 Identities=18% Similarity=-0.019 Sum_probs=30.3
Q ss_pred ceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecC--ccccccCCC-cCChHH
Q 039882 728 DLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNS--EKMSKSTGN-FRTLKQ 786 (1142)
Q Consensus 728 Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G--~KMSKS~GN-vI~p~~ 786 (1142)
.+...|.||...+ -.+. -.|-.-...-| .++.|.++. +.| .|||||.+| .|...|
T Consensus 221 ~lVPvG~DQd~~~-~ltR--dia~r~~~~kp-~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 221 CLIPCAIDQDPYF-RMTR--DVAPRLGYYKP-ALIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred ceeecccchHHHH-HHHH--HHHHHhCCCCc-ceeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 4667799997633 2222 22211111223 233344554 566 799999988 577654
No 145
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.30 E-value=2.3 Score=51.24 Aligned_cols=19 Identities=42% Similarity=0.408 Sum_probs=15.8
Q ss_pred EEeCCCCCCCCcCchhhhh
Q 039882 104 FGNFPFPYMNGYLHLGHAF 122 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~ 122 (1142)
++|-=||=|||-||||||-
T Consensus 249 V~TRFPPEPNG~LHIGHaK 267 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAK 267 (764)
T ss_pred eEEeCCCCCCceeeecchh
Confidence 4455589999999999995
No 146
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=65.87 E-value=12 Score=45.86 Aligned_cols=33 Identities=33% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|-|||.||+||+++....-.+||-. .|.-+|.
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLR 42 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFARHH--GGKFILR 42 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEE
Confidence 69999999999999999988888753 4554444
No 147
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=64.42 E-value=27 Score=38.53 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=53.5
Q ss_pred cceEEeecccchhhH-HHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCC------cCC----h----HHHHH--
Q 039882 727 FDLRVSGKDLIQNHL-TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN------FRT----L----KQAIE-- 789 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl-~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GN------vI~----p----~~~i~-- 789 (1142)
+.-.+-|.|++.+-. +..++ .++ +. +.|+ ++..+|+..+|.||||+.+- .++ | ...+.
T Consensus 122 IThVvRG~D~l~~t~~Q~~l~--~aL-g~-~~P~-~~~~~hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~ 196 (238)
T cd00807 122 ITHSLCTLEFEDRRPSYYWLC--DAL-RL-YRPH-QWEFSRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRR 196 (238)
T ss_pred CCeEEechhhhcCCHHHHHHH--HHc-CC-CCCc-eeEEEEECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHc
Confidence 344556777776532 22222 122 21 2343 33457788899999999852 121 1 22233
Q ss_pred HcChhhhhhhhhccCCCCCCccchHHHHHH
Q 039882 790 EFSADATRFSLADAGDGVDDANFVFDTANT 819 (1142)
Q Consensus 790 ~yGaDalRl~la~~~~~~~D~~fs~~~~~~ 819 (1142)
.|-+++++=|++..|-...|..|+++.+..
T Consensus 197 G~~peal~~~l~~lG~s~~~~~~~~~~l~~ 226 (238)
T cd00807 197 GVTPEAIRQFILRQGVSKADSTIDWDKLEA 226 (238)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 366899999999888777888888876543
No 148
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=57.33 E-value=18 Score=39.19 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=30.3
Q ss_pred Ccc--eEEeecccchhhHHHHHHHHHHHhcCCCCC-cEEEEeeEEee-cCccccccCC
Q 039882 726 PFD--LRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-RGFRCNGHIML-NSEKMSKSTG 779 (1142)
Q Consensus 726 P~D--l~~~G~D~ir~hl~~~l~~~~al~~~~~~P-k~v~~hG~vl~-~G~KMSKS~G 779 (1142)
-+| +++.|.||.. |+........ .++..+-| -..+.+|+|+. +|.||||..|
T Consensus 157 ~~~~~i~v~g~~~~~-~~~~~~~~~~-~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 157 GADKIIYVVGADHHG-HFKRLFAALE-LLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCEEEEEECCCHHH-HHHHHHHHHH-HcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 445 5699999985 4333322222 23322112 23345689985 4999999887
No 149
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=56.47 E-value=9.3 Score=43.17 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+| .||+||.+. -..+.+++. .|+++.+..|
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~ 39 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG 39 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe
Confidence 3689 699999875 445566665 5888877665
No 150
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=56.31 E-value=25 Score=43.38 Aligned_cols=37 Identities=35% Similarity=0.215 Sum_probs=28.6
Q ss_pred EeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 105 GNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 105 i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
++==||.|||.||||||++..+...+||- ..|.-+|.
T Consensus 31 ~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR 67 (554)
T PRK05347 31 HTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLR 67 (554)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 34446999999999999999999999985 34554443
No 151
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=55.24 E-value=30 Score=38.18 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=38.7
Q ss_pred EEeeEEeecCccccccCCC------cC---------ChHHHHH-HcChhhhhhhhhccCCCCCCccchHHHHHHH
Q 039882 762 RCNGHIMLNSEKMSKSTGN------FR---------TLKQAIE-EFSADATRFSLADAGDGVDDANFVFDTANTG 820 (1142)
Q Consensus 762 ~~hG~vl~~G~KMSKS~GN------vI---------~p~~~i~-~yGaDalRl~la~~~~~~~D~~fs~~~~~~~ 820 (1142)
..++.++.+|+||||..+- .+ +...+-+ .|-+++++-|++..|-...+..++.+.+..+
T Consensus 155 ~H~pll~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~ 229 (240)
T cd09287 155 IHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAI 229 (240)
T ss_pred EeeeeecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHH
Confidence 4566677789999999842 11 2222222 3677888888888776667777777665443
No 152
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=54.84 E-value=41 Score=41.33 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=29.8
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+++==||.|||.||||||++..+...+||- ..|.-+|.
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLR 49 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILR 49 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 344446999999999999999999999974 35655554
No 153
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=53.84 E-value=9.7 Score=42.91 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+| .|||||.+. + -.+.|++++ |++|.+..|
T Consensus 8 ~PTg~~lHLG~~~~-~--~~~~~lq~~-g~~~~ilI~ 40 (269)
T cd00805 8 DPTAPSLHLGHLVP-L--MKLRDFQQA-GHEVIVLIG 40 (269)
T ss_pred CCCCCcccHHHHHH-H--HHHHHHHHC-CCeEEEEEC
Confidence 4689 899999874 2 368888876 988876665
No 154
>PLN02886 aminoacyl-tRNA ligase
Probab=53.82 E-value=10 Score=44.70 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.1
Q ss_pred CCcceEEeecccchhh
Q 039882 725 YPFDLRVSGKDLIQNH 740 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~h 740 (1142)
|-+|+...|.||..-+
T Consensus 183 ~~a~~VPVG~DQ~qH~ 198 (389)
T PLN02886 183 YQADLVPVGEDQKQHL 198 (389)
T ss_pred cCCCeEEEccchHHHH
Confidence 5688999999998733
No 155
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=51.18 E-value=19 Score=42.48 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=29.4
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
++|++.+|. -|+|.+||||.. --..+.+++. .|++|.+..+
T Consensus 65 ~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~Ia 105 (368)
T PRK12285 65 KPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIA 105 (368)
T ss_pred CCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEec
Confidence 566677763 678999999975 2456777777 7888766554
No 156
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=48.56 E-value=46 Score=40.97 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=37.0
Q ss_pred EeeEEeecCccccccCCCc---------------CChHHHHH-HcChhhhhhhhhccCCCCCCccchH
Q 039882 763 CNGHIMLNSEKMSKSTGNF---------------RTLKQAIE-EFSADATRFSLADAGDGVDDANFVF 814 (1142)
Q Consensus 763 ~hG~vl~~G~KMSKS~GNv---------------I~p~~~i~-~yGaDalRl~la~~~~~~~D~~fs~ 814 (1142)
..|++..+|.||||+++.. .+...+.+ -|-++|+|=|++..|-...|...+.
T Consensus 231 ~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~ 298 (522)
T TIGR00440 231 EFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEV 298 (522)
T ss_pred EEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceeh
Confidence 5577778999999999875 25555554 4888999999998765434433333
No 157
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=47.85 E-value=18 Score=42.12 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=25.5
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee-cccCC
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL-PFGFH 148 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~-~~G~D 148 (1142)
+++..| =-|+|.+||||.. .. -.+.++++. |++|.+ +-+||
T Consensus 31 ~~v~~G-~~PTG~lHLG~~~-~~--~~~~~lq~~-g~~~~i~IaD~h 72 (329)
T PRK08560 31 PKAYIG-FEPSGKIHLGHLL-TM--NKLADLQKA-GFKVTVLLADWH 72 (329)
T ss_pred CEEEEc-cCCCCcchhhhhH-HH--HHHHHHHHC-CCeEEEEEccch
Confidence 344455 3678999999965 22 337777764 777654 44444
No 158
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=47.63 E-value=15 Score=43.53 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=25.5
Q ss_pred CCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCc
Q 039882 111 YMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM 152 (1142)
Q Consensus 111 y~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~Gl 152 (1142)
-|+| .||+||... --.+.++++ .|++|.+..| |.||+
T Consensus 38 dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig-d~ta~ 75 (377)
T TIGR00234 38 DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG-DATAL 75 (377)
T ss_pred CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe-ccchh
Confidence 4699 899999874 233566666 6999887764 44443
No 159
>PLN02486 aminoacyl-tRNA ligase
Probab=43.71 E-value=31 Score=40.92 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCcEEEeCCCCCCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 100 GEKFFGNFPFPYMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++|++..|. -||| .|||||.. --.++..++...|..+...++
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv---~~~~~~~lQ~~~~~~~~I~ia 114 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLI---PFMFTKYLQDAFKVPLVIQLT 114 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHH---HHHHHHHHHHhCCCeEEEEec
Confidence 3567788874 7899 59999954 445566667666776666544
No 160
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=43.67 E-value=19 Score=41.04 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=27.1
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++.+..|. -|+|.|||||.... ..+.++++ .|++|.+..|
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 344444442 57999999988643 45666666 8999987765
No 161
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=43.50 E-value=17 Score=41.21 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|||.|||||.+..+. ...+++.. |+++.+..+
T Consensus 7 ~PTG~lHLG~~~~al~--~~~~lQ~a-g~~~~~~Ia 39 (280)
T cd00806 7 QPSGSLHLGHYLGAFR--FWVWLQEA-GYELFFFIA 39 (280)
T ss_pred CCCchhhHHHHHHHHH--HHHHHHhC-CCCEEEEec
Confidence 4789999999986333 34445543 888766544
No 162
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=40.44 E-value=78 Score=40.98 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=45.8
Q ss_pred EEEEeeEEeecCccccccC-------CCcC--------ChHHHHH-HcChhhhhhhhhccCCCCCCccchHHHHHHHHH
Q 039882 760 GFRCNGHIMLNSEKMSKST-------GNFR--------TLKQAIE-EFSADATRFSLADAGDGVDDANFVFDTANTGIL 822 (1142)
Q Consensus 760 ~v~~hG~vl~~G~KMSKS~-------GNvI--------~p~~~i~-~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~ 822 (1142)
.+...|++...|.||||++ |-+- +...+.+ -|-++|+|-|++..|-...|..++++.+....+
T Consensus 260 ~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 260 RQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred ceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHH
Confidence 3556788888999999998 3321 2334433 488999999999988777888888877655443
No 163
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=39.71 E-value=53 Score=40.33 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=27.7
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
.|-|||.||+||+++....-.+|| ...|.-++.
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLR 42 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFAR--HHNGKFLLR 42 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE
Confidence 599999999999999999998888 446666654
No 164
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=39.63 E-value=23 Score=41.13 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=24.6
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
.+..| =-|+|.+||||.++... .++....|++|.+..+
T Consensus 4 ~v~~G-~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 4 RVLTG-IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIA 41 (328)
T ss_pred EEEEe-eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEee
Confidence 34444 26789999999876653 3343456888765543
No 165
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=38.86 E-value=26 Score=42.04 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=26.1
Q ss_pred EEEeCCCCCCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 103 FFGNFPFPYMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 103 f~i~~ppPy~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+.+..|. -|+| .||+||... -..+.++++ .|++|.+..|
T Consensus 34 ~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 34 LRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 3344442 5789 599999873 345666665 6888877765
No 166
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=38.75 E-value=55 Score=39.44 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
.|-|||.||+||+++..+.-.+||- ..|.-+|.
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLR 37 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIR 37 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 5999999999999999998888874 35665555
No 167
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=35.46 E-value=40 Score=40.46 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=25.7
Q ss_pred cEEEeCCCCCCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 102 KFFGNFPFPYMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 102 kf~i~~ppPy~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
++.+..|. -|+| .||+||+.. --.+.+++ ..|++|.+..|
T Consensus 33 ~~~iy~G~-dPT~~sLHlGhlv~---l~~l~~lq-~~G~~~~~lig 73 (410)
T PRK13354 33 PLTLYLGF-DPTAPSLHIGHLVP---LMKLKRFQ-DAGHRPVILIG 73 (410)
T ss_pred CcEEEEcc-cCCCCCcchhhHHH---HHHHHHHH-HcCCeEEEEEc
Confidence 34455553 6788 599999553 23345555 47898887776
No 168
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=34.89 E-value=26 Score=40.74 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=21.0
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|||.|||||.+....+ +.+++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 47999999998865433 455554 366655443
No 169
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=34.59 E-value=1.5e+02 Score=37.18 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=41.0
Q ss_pred EEEeeEEeecCccccccCCCc-CC---------h-----HHHH-HHcChhhhhhhhhccCCCCCCccchHHHHHHH
Q 039882 761 FRCNGHIMLNSEKMSKSTGNF-RT---------L-----KQAI-EEFSADATRFSLADAGDGVDDANFVFDTANTG 820 (1142)
Q Consensus 761 v~~hG~vl~~G~KMSKS~GNv-I~---------p-----~~~i-~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~ 820 (1142)
+...+.+..+|.||||+++.- |. | ..+. .-|.++++|-|+...+....+..|+++.+...
T Consensus 276 ~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~ 351 (601)
T PTZ00402 276 VEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYF 351 (601)
T ss_pred EEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 344465558999999998752 11 1 1111 25788999999888877778888888766543
No 170
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=34.15 E-value=33 Score=41.02 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
-|+|.|||||.++.+.. ..+.+...|+++.|-
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~ 41 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYF 41 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEE
Confidence 47999999997765432 333444458887543
No 171
>PLN02907 glutamate-tRNA ligase
Probab=29.43 E-value=1.8e+02 Score=37.56 Aligned_cols=86 Identities=7% Similarity=0.005 Sum_probs=51.7
Q ss_pred eEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccC------CCcC---------ChHHHHH-HcC
Q 039882 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKST------GNFR---------TLKQAIE-EFS 792 (1142)
Q Consensus 729 l~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~------GNvI---------~p~~~i~-~yG 792 (1142)
-.+-|.|++.+--.+..+..++ +- +.| .+...|++..+|.||||++ .+.+ +...+-+ -|-
T Consensus 408 hvlRg~e~~~~t~~q~~l~~~l--g~-~~p-~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~ 483 (722)
T PLN02907 408 HALRSSEYHDRNAQYYRILEDM--GL-RKV-HIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLK 483 (722)
T ss_pred eEeecHhhhhChHHHHHHHHHc--CC-CCC-eeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCC
Confidence 4445666665432222222221 21 233 4567788889999999998 2222 2223322 278
Q ss_pred hhhhhhhhhccCCCCCCccchHHHHH
Q 039882 793 ADATRFSLADAGDGVDDANFVFDTAN 818 (1142)
Q Consensus 793 aDalRl~la~~~~~~~D~~fs~~~~~ 818 (1142)
++++|=|+...+....+..|+++.+.
T Consensus 484 ~eai~~f~~~~g~s~~~~~~~~~~l~ 509 (722)
T PLN02907 484 IEALKQFILSQGASKNLNLMEWDKLW 509 (722)
T ss_pred HHHHHHHHHHhCCCcCCccccHHHHH
Confidence 88999888888777778888876543
No 172
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.01 E-value=58 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.028 Sum_probs=27.7
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCC-ceeecc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGA-NVLLPF 145 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~-~Vl~~~ 145 (1142)
.++.|.+| =-|||.|||||.+..+ -.+++...++ ++.|..
T Consensus 4 ~~~~vlSG-~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~I 44 (314)
T COG0180 4 KKFRVLSG-IQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFFI 44 (314)
T ss_pred CCceEEec-CCCCCCcchhHhHHHH----HHHHHHhcccCceEEEE
Confidence 45666666 4789999999987654 4566666664 666543
No 173
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=28.19 E-value=77 Score=39.33 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=42.3
Q ss_pred eEEeecCccccccCCCc---------------CChHHHHH-HcChhhhhhhhhccCCCCCCccchHHHHHHHH
Q 039882 765 GHIMLNSEKMSKSTGNF---------------RTLKQAIE-EFSADATRFSLADAGDGVDDANFVFDTANTGI 821 (1142)
Q Consensus 765 G~vl~~G~KMSKS~GNv---------------I~p~~~i~-~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~ 821 (1142)
|-+..+|.||||++... .+...+.+ -|-++|+|=|++..|-...|..++++.+.+..
T Consensus 278 ~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~n 350 (574)
T PTZ00437 278 SRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTL 350 (574)
T ss_pred eeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHH
Confidence 55668999999999874 23444443 48899999999988877788888887665543
No 174
>PLN02886 aminoacyl-tRNA ligase
Probab=28.04 E-value=41 Score=39.84 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=19.1
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
-|+|.+||||.+..+ .=+++++. |+++.|
T Consensus 54 qPSG~lHLGnylGai--~~~v~lQ~--~~~~~~ 82 (389)
T PLN02886 54 QPTGSIHLGNYLGAI--KNWVALQE--TYDTFF 82 (389)
T ss_pred CCCCccHHHHHHHHH--HHHHHHhc--cCCEEE
Confidence 468999999977544 23444544 777654
No 175
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=26.63 E-value=55 Score=38.08 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=19.2
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
=|+|.|||||.++.+.. ..+.+.-.|.++.|.
T Consensus 11 qPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~ 42 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF 42 (332)
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE
Confidence 46899999997764432 233333346555543
No 176
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=25.51 E-value=1.1e+02 Score=36.99 Aligned_cols=33 Identities=33% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+|-|||.||||||++....-.+||-+ .|.-++.
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLR 40 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYARKH--GGKFILR 40 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE
Confidence 59999999999999998777777642 3444443
No 177
>PLN02859 glutamine-tRNA ligase
Probab=25.08 E-value=1.1e+02 Score=39.34 Aligned_cols=57 Identities=18% Similarity=0.027 Sum_probs=40.0
Q ss_pred EEeeEEeecCccccccCCCcC---------------ChHHHHH-HcChhhhhhhhhccCCCCCCc-cchHHHHH
Q 039882 762 RCNGHIMLNSEKMSKSTGNFR---------------TLKQAIE-EFSADATRFSLADAGDGVDDA-NFVFDTAN 818 (1142)
Q Consensus 762 ~~hG~vl~~G~KMSKS~GNvI---------------~p~~~i~-~yGaDalRl~la~~~~~~~D~-~fs~~~~~ 818 (1142)
...|.+..+|.||||+++... +...+.+ -|-++|+|=|++..|-...|. .|+.+.+.
T Consensus 488 ~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le 561 (788)
T PLN02859 488 WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLE 561 (788)
T ss_pred EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHH
Confidence 344555589999999998742 3444444 488899999999887655565 67776653
No 178
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.31 E-value=76 Score=35.56 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.8
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhh
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSF 124 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~ 124 (1142)
+++||+.+|----+|.||+||..-.
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPF 107 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPF 107 (397)
T ss_pred CCceEEEeCCCCCccccccccchhH
Confidence 4678898887777899999997543
No 179
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=22.20 E-value=65 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=18.5
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHH-HcCCceee
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHR-LKGANVLL 143 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~r-m~G~~Vl~ 143 (1142)
=|||.+||||.+... + .|.. ..|+++.|
T Consensus 10 qPSG~~HLGnylG~i-k----~wv~lq~~~~~~~ 38 (398)
T PRK12283 10 RPTGRLHLGHYHGVL-K----NWVKLQHEYECFF 38 (398)
T ss_pred CCCCcchHHHHHHHH-H----HHHHHhcCCcEEE
Confidence 479999999988733 3 3333 35777654
No 180
>PLN02627 glutamyl-tRNA synthetase
Probab=21.45 E-value=1.9e+02 Score=35.89 Aligned_cols=37 Identities=30% Similarity=0.166 Sum_probs=29.4
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
.+=+ .|-|||.||+||+++....-.+|| ...|.-++.
T Consensus 47 r~RF-APSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLR 83 (535)
T PLN02627 47 RVRF-APSPTGNLHVGGARTALFNYLFAR--SKGGKFVLR 83 (535)
T ss_pred EEEe-CCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence 3344 479999999999999999999988 445666665
No 181
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=21.44 E-value=64 Score=38.32 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=18.9
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
=|+|.+||||+.-.. --+.+++. .|++|.+..|
T Consensus 74 ~PTG~lHLG~g~i~~--~~~~~lq~-~G~~v~~~Ia 106 (383)
T PTZ00126 74 EPSGRMHIAQGILKA--INVNKLTK-AGCVFVFWVA 106 (383)
T ss_pred CCCCcccccchHhHh--HHHHHHHh-CCCeEEEEEc
Confidence 479999999943111 12233332 3887765554
No 182
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=93 Score=36.43 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~ 785 (1142)
|-+-+.++|+||.-+--.=.=+...+.-.+ ..+-+ ++--.++ ..|.|+-||-||.||.+
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~~~-~~vfG-lT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMPIQ-AFVFG-LTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhcccc-cceee-eeeeeEecCcchhhccCCCceEEec
Confidence 568899999999865311111222221111 11111 1222333 69999999999999864
Done!