Query 039882
Match_columns 1142
No_of_seqs 463 out of 2985
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wz2_A Leucyl-tRNA synthetase; 100.0 4E-178 1E-182 1704.2 64.1 947 65-1140 2-967 (967)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 1E-152 4E-157 1453.6 40.2 788 48-1005 2-835 (917)
3 1wkb_A Leucyl-tRNA synthetase; 100.0 2E-149 7E-154 1423.8 59.1 790 65-932 2-809 (810)
4 1gax_A Valrs, valyl-tRNA synth 100.0 3E-144 1E-148 1364.4 70.6 717 63-976 3-737 (862)
5 1ile_A Ilers, isoleucyl-tRNA s 100.0 6E-143 2E-147 1361.8 49.0 760 65-973 6-817 (821)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 3E-119 1E-123 1141.6 47.0 682 65-949 2-809 (878)
7 4arc_A Leucine--tRNA ligase; l 100.0 2E-118 7E-123 1123.9 48.2 680 61-948 19-811 (880)
8 1rqg_A Methionyl-tRNA syntheta 100.0 1.3E-80 4.5E-85 776.7 35.9 480 101-932 2-519 (722)
9 3u1f_A Methionyl-tRNA syntheta 100.0 1E-80 3.5E-85 761.7 32.9 467 100-932 8-497 (542)
10 2x1l_A Methionyl-tRNA syntheta 100.0 5.4E-75 1.8E-79 707.6 32.6 452 100-932 11-489 (524)
11 3h99_A Methionyl-tRNA syntheta 100.0 6.2E-74 2.1E-78 702.4 28.4 482 100-947 17-528 (560)
12 4dlp_A Aminoacyl-tRNA syntheta 100.0 2.6E-73 9.1E-78 693.4 33.7 450 100-932 24-496 (536)
13 3kfl_A Methionyl-tRNA syntheta 100.0 1.6E-73 5.3E-78 697.3 26.4 460 100-932 25-513 (564)
14 2d5b_A Methionyl-tRNA syntheta 100.0 9.5E-73 3.3E-77 684.6 29.8 443 100-932 2-467 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 1.1E-71 3.7E-76 674.4 27.8 442 100-933 4-467 (497)
16 3pz6_A Leurs, leucyl-tRNA synt 100.0 3.7E-57 1.3E-61 490.9 20.3 233 343-575 75-311 (311)
17 2wfd_A Leucyl-tRNA synthetase, 100.0 1.4E-49 4.9E-54 434.6 23.0 252 319-570 1-252 (252)
18 2wfg_A Cytosolic leucyl-tRNA s 100.0 5.1E-46 1.8E-50 407.7 17.4 244 324-572 2-253 (261)
19 3c8z_A Cysteinyl-tRNA syntheta 100.0 4.3E-35 1.5E-39 344.8 30.6 145 725-891 243-390 (414)
20 3sp1_A Cysteinyl-tRNA syntheta 100.0 2.8E-34 9.5E-39 338.2 29.3 155 726-890 253-416 (501)
21 3tqo_A Cysteinyl-tRNA syntheta 100.0 3.3E-33 1.1E-37 328.0 30.2 147 726-894 223-373 (462)
22 1wny_A Isoleucyl-tRNA syntheta 100.0 2.5E-32 8.6E-37 285.6 17.3 174 326-569 6-181 (186)
23 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.1E-31 7.2E-36 316.5 27.4 153 725-895 219-372 (461)
24 3o0a_A Leucyl-tRNA synthetase 100.0 2.1E-30 7.2E-35 276.5 6.2 171 347-567 37-213 (219)
25 2ajg_A Leucyl-tRNA synthetase; 100.0 1.2E-29 4.2E-34 267.5 11.0 179 326-567 13-194 (196)
26 1wka_A Valyl-tRNA synthetase; 100.0 1.7E-28 6E-33 246.2 14.9 133 326-568 7-143 (147)
27 3fnr_A Arginyl-tRNA synthetase 99.9 4.8E-20 1.7E-24 217.8 31.5 163 729-897 239-418 (464)
28 1iq0_A Arginyl-tRNA synthetase 99.8 2.2E-18 7.5E-23 211.2 28.8 135 760-896 381-546 (592)
29 2zue_A Arginyl-tRNA synthetase 99.8 6.3E-17 2.1E-21 198.8 28.7 135 760-896 411-590 (629)
30 1irx_A Lysyl-tRNA synthetase; 99.8 2.8E-19 9.6E-24 216.5 7.1 86 731-821 235-327 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.4 3.9E-10 1.3E-14 137.7 34.1 138 756-897 392-569 (607)
32 1nzj_A Hypothetical protein YA 97.2 0.00033 1.1E-08 78.0 7.0 42 247-294 58-100 (298)
33 3aii_A Glutamyl-tRNA synthetas 97.2 0.00033 1.1E-08 83.5 6.8 89 729-821 289-393 (553)
34 2o5r_A Glutamyl-tRNA synthetas 97.1 0.00059 2E-08 81.0 7.5 73 727-804 219-293 (481)
35 1qtq_A GLNRS, protein (glutami 97.0 0.0007 2.4E-08 80.7 7.4 88 727-817 224-327 (553)
36 3aii_A Glutamyl-tRNA synthetas 97.0 0.00046 1.6E-08 82.3 5.6 42 247-294 149-190 (553)
37 3al0_C Glutamyl-tRNA(Gln) amid 96.8 0.0041 1.4E-07 75.5 12.0 41 101-144 128-168 (592)
38 2cyb_A Tyrosyl-tRNA synthetase 96.7 0.0014 4.9E-08 74.0 6.6 71 724-803 168-239 (323)
39 2hz7_A Glutaminyl-tRNA synthet 96.7 0.0014 4.7E-08 81.6 6.7 42 103-150 67-108 (851)
40 4g6z_A Glutamate-tRNA ligase; 96.6 0.0035 1.2E-07 74.1 8.5 43 761-804 251-295 (490)
41 1qtq_A GLNRS, protein (glutami 96.3 0.0039 1.3E-07 74.3 7.0 37 109-150 32-68 (553)
42 2cfo_A Glutamyl-tRNA synthetas 96.3 0.0032 1.1E-07 74.9 5.8 73 727-804 204-278 (492)
43 3afh_A Glutamyl-tRNA synthetas 96.0 0.017 5.8E-07 68.5 10.0 44 760-804 241-286 (488)
44 2hz7_A Glutaminyl-tRNA synthet 95.4 0.023 7.9E-07 70.8 8.5 88 727-818 264-368 (851)
45 4gri_A Glutamate--tRNA ligase; 95.4 0.021 7.2E-07 68.4 7.9 83 729-816 232-318 (512)
46 1j09_A Glutamyl-tRNA synthetas 95.3 0.027 9.2E-07 66.5 8.3 70 730-804 203-274 (468)
47 2ja2_A Glutamyl-tRNA synthetas 95.3 0.035 1.2E-06 65.9 9.2 73 728-804 210-288 (498)
48 2cfo_A Glutamyl-tRNA synthetas 95.3 0.0082 2.8E-07 71.3 3.8 41 248-294 55-96 (492)
49 2yxn_A Tyrosyl-tRNA synthetase 95.1 0.01 3.4E-07 66.9 3.4 72 726-803 191-263 (322)
50 2g36_A Tryptophanyl-tRNA synth 95.1 0.016 5.3E-07 65.8 5.0 73 725-803 152-230 (340)
51 1y42_X Tyrosyl-tRNA synthetase 94.9 0.011 3.9E-07 68.1 3.3 75 725-802 231-320 (392)
52 3tzl_A Tryptophanyl-tRNA synth 94.8 0.011 3.7E-07 66.5 2.7 61 725-786 138-205 (322)
53 2pid_A Tyrosyl-tRNA synthetase 94.8 0.012 4E-07 67.2 2.9 73 725-803 209-282 (356)
54 1jil_A Tyrrs, tyrosyl-tRNA syn 94.6 0.017 5.7E-07 67.4 3.8 74 725-803 185-259 (420)
55 1h3f_A Tyrosyl-tRNA synthetase 94.6 0.026 8.9E-07 65.9 5.4 70 725-803 186-257 (432)
56 2ts1_A Tyrosyl-tRNA synthetase 94.3 0.019 6.5E-07 66.7 3.4 74 725-803 184-258 (419)
57 2jan_A Tyrosyl-tRNA synthetase 93.9 0.03 1E-06 65.2 3.9 73 725-803 186-260 (432)
58 1yi8_B Tryptophanyl-tRNA synth 93.8 0.026 8.9E-07 64.2 3.2 61 725-786 161-228 (351)
59 1n3l_A Tyrosyl-tRNA synthetase 93.8 0.033 1.1E-06 64.0 4.0 69 725-802 177-247 (372)
60 2el7_A Tryptophanyl-tRNA synth 93.5 0.026 8.9E-07 63.9 2.5 73 725-803 140-220 (337)
61 2dlc_X Tyrosyl-tRNA synthetase 92.7 0.058 2E-06 62.4 3.9 58 725-786 181-241 (394)
62 2zp1_A Tyrosyl-tRNA synthetase 91.9 0.067 2.3E-06 60.0 2.8 54 725-786 162-217 (314)
63 2o5r_A Glutamyl-tRNA synthetas 91.3 0.3 1E-05 57.9 7.7 40 102-143 12-51 (481)
64 2yy5_A Tryptophanyl-tRNA synth 91.1 0.1 3.4E-06 59.3 3.3 60 725-785 146-217 (348)
65 1i6k_A TRPRS, tryptophanyl-tRN 91.0 0.11 3.9E-06 58.4 3.5 59 725-784 136-206 (328)
66 3vgj_A Tyrosyl-tRNA synthetase 90.6 0.14 4.9E-06 58.6 3.9 57 725-785 199-260 (373)
67 2ip1_A Tryptophanyl-tRNA synth 90.2 0.14 4.9E-06 59.7 3.5 58 725-786 248-309 (432)
68 2cya_A Tyrosyl-tRNA synthetase 90.2 0.19 6.5E-06 57.4 4.5 68 725-802 176-263 (364)
69 3hzr_A Tryptophanyl-tRNA synth 89.7 0.22 7.4E-06 57.2 4.5 56 727-786 225-283 (386)
70 3i05_A Tryptophanyl-tRNA synth 88.9 0.16 5.3E-06 58.6 2.5 56 727-786 225-283 (395)
71 3jxe_A Tryptophanyl-tRNA synth 88.4 0.23 7.9E-06 57.1 3.5 54 727-784 208-265 (392)
72 1j09_A Glutamyl-tRNA synthetas 88.3 0.56 1.9E-05 55.3 6.8 25 109-133 7-31 (468)
73 3tze_A Tryptophanyl-tRNA synth 88.3 0.26 8.8E-06 56.9 3.8 57 725-785 242-302 (406)
74 2j5b_A Tyrosyl-tRNA synthetase 88.1 0.25 8.4E-06 56.1 3.4 56 726-785 186-245 (348)
75 1r6u_A Tryptophanyl-tRNA synth 87.7 0.28 9.5E-06 57.2 3.6 56 725-785 255-315 (437)
76 4arc_A Leucine--tRNA ligase; l 86.9 0.43 1.5E-05 60.6 4.9 76 550-627 154-245 (880)
77 3hv0_A Tryptophanyl-tRNA synth 86.9 0.3 1E-05 56.2 3.2 53 728-785 222-279 (393)
78 2cyc_A Tyrosyl-tRNA synthetase 86.9 0.3 1E-05 56.0 3.2 59 725-786 179-265 (375)
79 3afh_A Glutamyl-tRNA synthetas 86.7 1.5 5.2E-05 51.8 9.2 38 103-143 26-63 (488)
80 2ja2_A Glutamyl-tRNA synthetas 86.5 1.9 6.4E-05 51.1 9.8 38 103-143 7-44 (498)
81 3sz3_A Tryptophanyl-tRNA synth 86.2 0.21 7.3E-06 56.4 1.5 59 725-784 142-215 (341)
82 1r6t_A Tryptophanyl-tRNA synth 85.7 0.4 1.4E-05 56.6 3.6 56 725-785 302-362 (477)
83 3p0j_A Tyrosyl-tRNA synthetase 85.0 0.49 1.7E-05 58.4 3.9 56 725-784 182-242 (690)
84 3al0_C Glutamyl-tRNA(Gln) amid 84.1 0.7 2.4E-05 56.0 4.7 72 726-804 315-390 (592)
85 3foc_A Tryptophanyl-tRNA synth 81.3 0.63 2.2E-05 54.2 2.7 50 729-783 290-344 (451)
86 3n9i_A Tryptophanyl-tRNA synth 80.5 0.7 2.4E-05 52.2 2.7 59 725-784 151-221 (346)
87 3prh_A Tryptophanyl-tRNA synth 77.0 1.1 3.7E-05 51.4 2.8 59 725-784 170-240 (388)
88 1nzj_A Hypothetical protein YA 75.8 1.7 5.8E-05 48.1 3.9 58 109-171 11-70 (298)
89 3a04_A Tryptophanyl-tRNA synth 74.7 2.2 7.7E-05 48.6 4.7 58 725-783 207-267 (372)
90 3tzl_A Tryptophanyl-tRNA synth 73.2 0.69 2.4E-05 51.8 -0.1 36 112-152 12-47 (322)
91 2v0c_A Aminoacyl-tRNA syntheta 72.6 2.3 7.8E-05 54.2 4.5 75 550-627 134-225 (878)
92 3jxe_A Tryptophanyl-tRNA synth 65.3 4.4 0.00015 46.4 4.4 45 102-151 73-117 (392)
93 1y42_X Tyrosyl-tRNA synthetase 62.7 5 0.00017 46.1 4.2 32 111-146 72-104 (392)
94 2cyb_A Tyrosyl-tRNA synthetase 61.8 7.8 0.00027 43.3 5.5 63 104-172 34-104 (323)
95 2dlc_X Tyrosyl-tRNA synthetase 61.7 6.1 0.00021 45.4 4.7 30 113-146 49-78 (394)
96 1n3l_A Tyrosyl-tRNA synthetase 60.9 4.6 0.00016 46.1 3.5 31 112-146 44-74 (372)
97 4g6z_A Glutamate-tRNA ligase; 53.7 23 0.00079 41.7 7.8 37 103-142 26-62 (490)
98 3vgj_A Tyrosyl-tRNA synthetase 51.8 4.8 0.00016 45.9 1.6 37 111-152 64-101 (373)
99 1i6k_A TRPRS, tryptophanyl-tRN 51.2 6 0.00021 44.3 2.3 31 112-146 10-40 (328)
100 2j5b_A Tyrosyl-tRNA synthetase 50.1 8.3 0.00029 43.5 3.2 33 111-146 48-80 (348)
101 3a04_A Tryptophanyl-tRNA synth 47.3 11 0.00037 42.9 3.6 41 101-146 69-109 (372)
102 2zp1_A Tyrosyl-tRNA synthetase 47.1 8.6 0.00029 42.7 2.7 30 113-146 38-67 (314)
103 2yxn_A Tyrosyl-tRNA synthetase 46.2 10 0.00035 42.3 3.1 32 111-146 41-73 (322)
104 2el7_A Tryptophanyl-tRNA synth 45.7 9.1 0.00031 43.0 2.6 32 112-146 10-42 (337)
105 2cya_A Tyrosyl-tRNA synthetase 45.2 11 0.00037 42.8 3.2 31 112-146 44-74 (364)
106 2pid_A Tyrosyl-tRNA synthetase 44.1 11 0.00038 42.6 3.0 32 111-146 54-86 (356)
107 3p0j_A Tyrosyl-tRNA synthetase 43.7 12 0.00041 46.1 3.4 44 103-152 41-85 (690)
108 2cyc_A Tyrosyl-tRNA synthetase 43.1 12 0.00041 42.6 3.2 33 111-146 41-73 (375)
109 2yy5_A Tryptophanyl-tRNA synth 42.1 8.8 0.0003 43.3 1.8 31 112-146 13-43 (348)
110 2g36_A Tryptophanyl-tRNA synth 41.9 14 0.00049 41.4 3.5 32 112-146 21-52 (340)
111 1r6t_A Tryptophanyl-tRNA synth 41.2 17 0.00058 42.7 4.1 42 101-146 154-196 (477)
112 2ip1_A Tryptophanyl-tRNA synth 41.0 15 0.0005 42.7 3.5 41 102-146 102-143 (432)
113 2jan_A Tyrosyl-tRNA synthetase 40.9 14 0.00047 42.9 3.2 32 111-146 40-72 (432)
114 3n9i_A Tryptophanyl-tRNA synth 40.5 12 0.0004 42.2 2.4 58 111-172 23-86 (346)
115 2ts1_A Tyrosyl-tRNA synthetase 40.3 17 0.00057 42.0 3.8 32 111-146 38-70 (419)
116 1jil_A Tyrrs, tyrosyl-tRNA syn 40.1 14 0.00049 42.6 3.2 32 111-146 40-72 (420)
117 3hzr_A Tryptophanyl-tRNA synth 39.8 20 0.0007 40.9 4.3 42 101-146 81-122 (386)
118 1r6u_A Tryptophanyl-tRNA synth 39.8 18 0.00061 42.0 3.9 42 101-146 107-149 (437)
119 1h3f_A Tyrosyl-tRNA synthetase 36.3 18 0.00061 42.0 3.2 37 111-152 45-82 (432)
120 3sz3_A Tryptophanyl-tRNA synth 35.3 13 0.00044 41.8 1.7 32 111-146 14-45 (341)
121 3prh_A Tryptophanyl-tRNA synth 34.4 14 0.00047 42.3 1.8 41 105-151 38-78 (388)
122 3foc_A Tryptophanyl-tRNA synth 30.3 34 0.0012 39.8 4.1 42 101-146 90-132 (451)
123 1yi8_B Tryptophanyl-tRNA synth 27.6 19 0.00065 40.6 1.4 28 113-145 32-60 (351)
124 3i05_A Tryptophanyl-tRNA synth 26.7 43 0.0015 38.3 4.2 42 101-146 77-119 (395)
125 3tze_A Tryptophanyl-tRNA synth 26.4 46 0.0016 38.2 4.3 42 101-146 100-142 (406)
126 3hv0_A Tryptophanyl-tRNA synth 24.4 40 0.0014 38.5 3.3 41 102-146 74-115 (393)
No 1
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.3e-178 Score=1704.18 Aligned_cols=947 Identities=32% Similarity=0.573 Sum_probs=811.2
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
+.+++.++|++||++|+++++|+.+.+.+.+ +++|++++|||||||.|||||++|++++|+++||+||+||+|+||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~----~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~ 77 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPK----EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCG----GGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCC----CCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCC
Confidence 3568899999999999999999987752211 489999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
|||||||||||.+|+++++ |. ...++.+.+.
T Consensus 78 ~GwD~~GlPie~~a~~~~~-----~~--------------------------------------------~~~~~~~~~~ 108 (967)
T 1wz2_A 78 MAWHITGSPIVGIAERIKN-----RD--------------------------------------------PKTIWIYRDV 108 (967)
T ss_dssp CCBBCCSSHHHHHHHHHHT-----TC--------------------------------------------HHHHHHHHTT
T ss_pred CcCCCCCcHHHHHHHHhhc-----cc--------------------------------------------hhHHHHHHHh
Confidence 9999999999999986432 21 0123344445
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
+|+++++|++|.+|++|+++|.+.|++||++||+++||+|+|+|||.||.|+++++|+|.+|+++||||+|.+||+|||.
T Consensus 109 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~ 188 (967)
T 1wz2_A 109 YKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPV 188 (967)
T ss_dssp SCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCC
Confidence 69999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecC---
Q 039882 305 DDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISE--- 381 (1142)
Q Consensus 305 ~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~--- 381 (1142)
|+|+||||||++++++.++.|++|+|++.+. +.+.+|+||||||||||||+||||||+++|+.+++++
T Consensus 189 ~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~---------~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~ 259 (967)
T 1wz2_A 189 VGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDK 259 (967)
T ss_dssp TSCBCCSSSCSSCCCCCEECCEEEEEECCCS---------SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSC
T ss_pred CCCCcchhhhccCCCceeceeEEEEEEecCC---------CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCc
Confidence 9999999999999999999999999987541 1247999999999999999999999999999999853
Q ss_pred CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhH
Q 039882 382 TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDY 461 (1142)
Q Consensus 382 ~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy 461 (1142)
+++||++++++.+++||. ++++++.+++|++|+|++|.||+++ +.+||++++||++++|||+||+|||||++||
T Consensus 260 ~~~~i~a~~~~~~~~~~~-----~~~~~~~~~~G~~l~G~~~~~P~~~-~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy 333 (967)
T 1wz2_A 260 EETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRNPVSG-DEVIILPAEFVDPDNATGVVMSVPAHAPFDH 333 (967)
T ss_dssp EEEEEEEHHHHHHHHHSS-----CEEEEEEECCSSTTSSCEEECSSSS-CEEEEEECSSCCSSSTTSCEEECTTSCTTTT
T ss_pred ceeeehHHHHHHHHHhhc-----cCcEEEEEEEchhhcCCEEECCCCC-CceEEEecccccCCCCcccEEeecCCCHHHH
Confidence 289999999999999873 4578999999999999999999984 6899999999999999999999999999999
Q ss_pred HHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccccc
Q 039882 462 MALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVG 541 (1142)
Q Consensus 462 ~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g 541 (1142)
+++++++++++|+++|||+++|+.++++++||+++++|+++++.+|++++|.+|+|..+|++|++.+|+++|++|+|.+|
T Consensus 334 ~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g 413 (967)
T 1wz2_A 334 VALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVP 413 (967)
T ss_dssp TTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSS
T ss_pred HHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEecc
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCcchHhhhHHHHHHHHHcCCeeeeeccC-ccccccCCCeEEEc-ccCccceecCchHHHHHHHHHHhcCceeCchhh
Q 039882 542 DFAGKKVQDAKPLIRSKLIETGEAIMYSEPE-KRVMSRSGDECVVA-LTDQWYITYGEEEWKRLATECLNSMNLYHDENR 619 (1142)
Q Consensus 542 ~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~-~~v~~Rsg~~~i~~-~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r 619 (1142)
+|+|+.|.+|++.|+++|++.|.++..+++. +|+|||||+||+++ +++||||+|++..||+++++++++++|+|++++
T Consensus 414 ~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~ 493 (967)
T 1wz2_A 414 PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR 493 (967)
T ss_dssp SSCSSBHHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTH
T ss_pred CcCCcCHHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCcccc
Confidence 9999999999999999999999999877765 69999999999999 699999999977799999999999999999999
Q ss_pred hhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEee
Q 039882 620 HGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFC 699 (1142)
Q Consensus 620 ~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFd 699 (1142)
++|.+|++|++||||||||+||||||||+.|++++++|+++|+++|+++|.++.. .+. +.+.++++.+++||+||.
T Consensus 494 ~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~--~~~--~g~~~~~l~~~~~d~~~~ 569 (967)
T 1wz2_A 494 AQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKL--RQE--GKLDPEKLTPEFFDYIFL 569 (967)
T ss_dssp HHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHH--HHT--TCCCGGGCCHHHHHHTTT
T ss_pred chHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHH--HHh--cCCChHHcCcccceeecc
Confidence 9999999999999999999999999998889999999999999999998887521 000 114566778899999997
Q ss_pred C----CCC---CCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCc
Q 039882 700 G----GPY---PESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSE 772 (1142)
Q Consensus 700 s----~~~---~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~ 772 (1142)
+ |.. +..+|+|.+.+..++++|++|||+|+|++|+||+++|+.+++++|.++++..+||+++++||||+.+|+
T Consensus 570 ~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~ 649 (967)
T 1wz2_A 570 EEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQ 649 (967)
T ss_dssp SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSS
T ss_pred CccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCE
Confidence 5 111 113578887777778899999999999999999999999999999999998899999999999999999
Q ss_pred cccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCCh
Q 039882 773 KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTG---ILRLTKEIAWMEEVLAVESSLRTGPPSTY 849 (1142)
Q Consensus 773 KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~---~~kl~n~~~~~~~~~~~~~~~~~~~~~~~ 849 (1142)
|||||+||||+|.++|++||||++||||++++++.+|++|+++.++.. +++++|+++++. .. . .+.......
T Consensus 650 KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~---~~-~-~~~~~~~~~ 724 (967)
T 1wz2_A 650 KMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFA---EY-E-VKGNVELKD 724 (967)
T ss_dssp CCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHH---SS-C-CCCCCCCCH
T ss_pred EccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHh---cC-C-CCCcccCCH
Confidence 999999999999999999999999999998778999999999988754 556666655442 21 1 111112257
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCC--ccchHHHHHHHHHHHHHHhhchhhHHHHH
Q 039882 850 ADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGA--GGLNRDLVWRFMDVQTRLITPICPHYAEY 927 (1142)
Q Consensus 850 ~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~--~~~~~~~l~~~l~~l~~lLaPi~P~~aEe 927 (1142)
.|+|++++++.++++++++|++|+|+.|++.+++.+.+.+|+|++.+++ +..++.+++++|+.+++||||||||+|||
T Consensus 725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEe 804 (967)
T 1wz2_A 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEE 804 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 8999999999999999999999999999987666788889999988763 23467799999999999999999999999
Q ss_pred HHHHhhcCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecC
Q 039882 928 VWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNE 1005 (1142)
Q Consensus 928 iw~~L~~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~ 1005 (1142)
||+.| +..+||+++.||++++. |+.++..+++++++++++|+++.... ++ .|++++||++.
T Consensus 805 iw~~L-~~~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~~---------~~-------~p~~~~i~~~~ 867 (967)
T 1wz2_A 805 LWEKL-GGEGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAK---------IE-------NAKRAYIYTAE 867 (967)
T ss_dssp HHHHS-SCCSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTSC---------CC-------CSBEEEECCCT
T ss_pred HHHhc-CCCCceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhC---------CC-------CCCeEEEEECC
Confidence 99987 55689999999998864 89999999999999999998886542 11 46899999884
Q ss_pred CChhhHHHHHHHHHhhhhccCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCHH
Q 039882 1006 QFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEI 1085 (1142)
Q Consensus 1006 ~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE~ 1085 (1142)
+|+.++++.+.+.. ++++++..+ +.++.+++.+|++|+|++.+++ .+++ ..++|||.
T Consensus 868 ---~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~e~ 924 (967)
T 1wz2_A 868 ---DWKWKVAEVVSEKR--------DFKSSMEEL-----MKDSEIRKHGKEVAKIVQKLIK------ERTF-DVKRINEE 924 (967)
T ss_dssp ---TTTTTTHHHHTTTC--------SSSHHHHHH-----HTSTTTTTTGGGTTHHHHHHTT------CCCC-CCCTTHHH
T ss_pred ---HHHHHHHHHHHhcc--------ChHHHHHHH-----hcCHHHHHHHHHHHHHHHHHhh------cccc-ccCCCCHH
Confidence 68888877765411 234566544 2356678889999999999876 2333 44699999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEecCCcccccccCccccccCCCCCCCCCceeEEE
Q 039882 1086 EVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFL 1140 (1142)
Q Consensus 1086 ~vL~~~~~yi~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~a~PgkP~i~~~ 1140 (1142)
++|+++++||++++|+ +|+|..+++ +. .+++.|+||+|+|+|+
T Consensus 925 ~~l~~~~~~~~~~~~~-~v~v~~~~~--~~---------~~~~~a~p~~p~i~~~ 967 (967)
T 1wz2_A 925 KALREAKEFMEKELGI-EIIINPTED--KG---------GKKKQAMPLKPAIFIE 967 (967)
T ss_dssp HHHTTTHHHHHHHHTS-BCCCSCSSC--CS---------SCTTCCBTTBCEEEEC
T ss_pred HHHHHHHHHHHHhhCc-eEEEEecCC--cc---------cccccCcCCCCeEEeC
Confidence 9999999999999999 688877652 11 2378899999999985
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.1e-152 Score=1453.56 Aligned_cols=788 Identities=18% Similarity=0.260 Sum_probs=645.1
Q ss_pred ChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHH
Q 039882 48 SFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKL 127 (1142)
Q Consensus 48 ~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~ 127 (1142)
+|++|++|| +|.||||+++.++|++||++|+++++|+...+.+.+ +++|+|++|||||||.||||||+|++++
T Consensus 2 ~y~~tl~lp---~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~----~~~f~i~~~pPY~nG~lHiGHa~n~~~~ 74 (917)
T 1ffy_A 2 DYEKTLLMP---KTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKG----NETFILHDGPPYANGNLHMGHALNKILK 74 (917)
T ss_dssp CSGGGSCCC---CCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTT----SCBCCEECCCCBSSSCCCHHHHHHHHHH
T ss_pred chhhhhcCC---CCCCCCCCChHHHhHHHHHHHHHCCCcccchhhccC----CCceeeCCCCCCCCCcchHHHHHHHHHH
Confidence 599999999 899999999999999999999999999986532222 6899999999999999999999999999
Q ss_pred HHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHH
Q 039882 128 EFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSK 207 (1142)
Q Consensus 128 D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1142)
||++||+||+||+|+|+|||||||||||.+|+| + |++ ++++++++|+++|++
T Consensus 75 Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k------~-G~~---------------------~~~~~~~~f~~~~~~ 126 (917)
T 1ffy_A 75 DFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTK------K-GVD---------------------RKKMSTAEFREKCKE 126 (917)
T ss_dssp HHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHH------H-TCC---------------------STTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccCchhhHHHHHHHHH------c-CCC---------------------chhCCHHHHHHHHHH
Confidence 999999999999999999999999999999986 2 653 134667777777654
Q ss_pred HHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHH
Q 039882 208 AAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLK 287 (1142)
Q Consensus 208 ~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~ 287 (1142)
|++.+...|++||+|||+++||+|+|.||| |.|+++++|+|.+|+
T Consensus 127 ---------------------------------~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d--~~~~~~v~~~F~~l~ 171 (917)
T 1ffy_A 127 ---------------------------------FALEQIELQKKDFRRLGVRGDFNDPYITLK--PEYEAAQIRIFGEMA 171 (917)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTTTCCSCTTSCEETTS--HHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhCeEEccCCCeEcCC--HHHHHHHHHHHHHHH
Confidence 444445678999999999999999999998 999999999999999
Q ss_pred HcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEE
Q 039882 288 SMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAW 367 (1142)
Q Consensus 288 ~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~ 367 (1142)
++|+||+|.+||+|||.|+|+|||+||+|++..+++.| |+|++.++ .+. +. .+.+++||||||||||||+|||
T Consensus 172 ~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~--v~f~~~~~-~g~---~~-~~~~~~i~TTrP~Tl~~~~av~ 244 (917)
T 1ffy_A 172 DKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIY--VAFNVKDD-KGV---VD-ADAKFIIWTTTPWTIPSNVAIT 244 (917)
T ss_dssp HTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEE--CCBCCCSS-TTG---GG-TTCCBCCEESCGGGSSCCBCCC
T ss_pred HcCCeEecccceeccCCCCcCcchhhhhcccccCceEE--EEEEeccc-ccc---cC-CCCeEEEEeCCcchhhhceEEE
Confidence 99999999999999999999999999999998888766 67776542 000 11 2578999999999999999999
Q ss_pred ECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCe--eeEeEecceecCCeEecCCCCCceEEEccCCccccCC
Q 039882 368 VLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPT--CLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDK 445 (1142)
Q Consensus 368 V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~--~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~ 445 (1142)
|||+++|++++++ ++.||+++++++.+..+. ....++ ++.+++|.+|+|+++.|||+ ++.+||++++||++++
T Consensus 245 v~p~~~Y~~v~~~-~~~~i~a~~~~~~~~~~~---~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~~~pvi~~~~V~~~~ 319 (917)
T 1ffy_A 245 VHPELKYGQYNVN-GEKYIIAEALSDAVAEAL---DWDKASIKLEKEYTGKELEWVVAQHPFL-DRESLVINGDHVTTDA 319 (917)
T ss_dssp CCTTCCCCCCCTT-TTCCCCCHHHHHHHHTTT---TCCSSCCCCCCCCCTTTCTTCCCBCCTT-CCSBCCCCCCSSCCSS
T ss_pred ECCCCceEEEEeC-CceeehHHHHHHHHHHhc---CcccceeeeeeeeecccccCCEEECCCC-CCeeeEEeccccccCC
Confidence 9999999999985 578999999888754321 112455 78899999999999999997 4789999999999999
Q ss_pred CCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHH
Q 039882 446 GTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAK 525 (1142)
Q Consensus 446 GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~ 525 (1142)
|||+||+|||||++||+++ ++|||+ ++.+| ++.|.+++
T Consensus 320 GTG~V~~~Pah~~~D~~~~----------~~~~L~--------~~~~v--d~~G~~~~---------------------- 357 (917)
T 1ffy_A 320 GTGCVHTAPGHGEDDYIVG----------QQYELP--------VISPI--DDKGVFTE---------------------- 357 (917)
T ss_dssp SCSCCCBCTTSCSHHHHTT----------TSSSCC--------CCCCC--CSSSCCCT----------------------
T ss_pred CCceeEeCCCCCHHHHHHH----------HHcCCC--------eeeeE--CCCceeCC----------------------
Confidence 9999999999999999876 679974 33343 45555432
Q ss_pred HhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeee--ccCccccccCCCeEEEcccCccceecCchHHHHH
Q 039882 526 RLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDECVVALTDQWYITYGEEEWKRL 603 (1142)
Q Consensus 526 ~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~ 603 (1142)
..|+|+|+++.+|++.|++.|++.|.++... +|++|+|||||+||++++++||||+++ +||++
T Consensus 358 -------------~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~--~lr~~ 422 (917)
T 1ffy_A 358 -------------EGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASIS--KVRQD 422 (917)
T ss_dssp -------------TCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHH--HHHHH
T ss_pred -------------cccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHH--HHHHH
Confidence 1478999999999999999999999987654 467899999999999999999999996 69999
Q ss_pred HHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeecc----CCCcc------------eeeehh-h
Q 039882 604 ATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVES----LSDST------------IYMAYY-T 666 (1142)
Q Consensus 604 ~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~ies----l~d~~------------iy~~~~-t 666 (1142)
+++++++++|+|+++++++.+||++++||||||||+||||||+ |++++ +++++ +|.|+. .
T Consensus 423 ~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~---~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~ 499 (917)
T 1ffy_A 423 ILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV---FYAENGEIIMTKETVNHVADLFAEHGSNIWFERE 499 (917)
T ss_dssp HHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCC---EECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSC
T ss_pred HHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccce---eeCCCCCEecCHHHHHHHHHHhhhcCCcccccCC
Confidence 9999999999999999999999999999999999999999995 33332 12221 122111 1
Q ss_pred hhhhcccCcccCCCCCC--CCCCCCCccceEEEeeCCCCCCCC-CCChhhHhhhHHhhhhcCCcceEEeecccchhhHHH
Q 039882 667 VAHMLHKGDMYGSTTGS--IEPGQMTDEVWEFIFCGGPYPESS-NIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTF 743 (1142)
Q Consensus 667 i~~~l~~~~~~g~~~~~--~~~e~~~~dv~D~wFds~~~~~~~-~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~ 743 (1142)
+..++.. ......||. +.. .+||||+|||||++|+.. +. ++++ .||+|+|++|+||+||||++
T Consensus 500 ~~~~~~~-~~~~~~~g~~~~~~---~~D~lD~WfdSg~~~~~~l~~--------~~~~--~~P~Dl~~~G~D~~r~wf~~ 565 (917)
T 1ffy_A 500 AKDLLPE-GFTHPGSPNGTFTK---ETDIMDVWFDSGSSHRGVLET--------RPEL--SFPADMYLEGSDQYRGWFNS 565 (917)
T ss_dssp HHHHSST-TCCCSSCTTSCCEE---CCCEECHHHHHHTHHHHTTTT--------STTC--CSSBSEEEEEGGGGTTHHHH
T ss_pred HHHhccc-ccccccCCcccccc---cCCCcCeecCCCCCHHHHcCC--------chhc--CCCceEEEEEecccccHHHH
Confidence 1111110 111112332 222 468999999999887542 22 2233 39999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHH---
Q 039882 744 CIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANT--- 819 (1142)
Q Consensus 744 ~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~--- 819 (1142)
+++.+.++++..|| ++|++||||+ .+|+|||||+||||+|.++|++||||++|||+++ +++.+|++|+++.+..
T Consensus 566 ~l~~s~~~~g~~Pf-k~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~ 643 (917)
T 1ffy_A 566 SITTSVATRGVSPY-KFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSD 643 (917)
T ss_dssp HHHHHHHHHSSCSB-SEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHhhCCCcc-cceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHH
Confidence 99999999888776 9999999999 5999999999999999999999999999999998 5899999999998764
Q ss_pred HHHHHHHHHHHHHHHHhhhc----cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh--hhHHHH
Q 039882 820 GILRLTKEIAWMEEVLAVES----SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQA--ARDEYR 893 (1142)
Q Consensus 820 ~~~kl~n~~~~~~~~~~~~~----~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~--~~~~Y~ 893 (1142)
++++|+|+++|+.+.+...+ .++...+ ..+|+|+++++++++++++++|++|+|+.|++. +++|.. ++|+|+
T Consensus 644 ~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l-~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~-l~~f~~~~l~~~Yl 721 (917)
T 1ffy_A 644 DYRKIRNTLRFMLGNINDFNPDTDSIPESEL-LEVDRYLLNRLREFTASTINNYENFDYLNIYQE-VQNFINVELSNFYL 721 (917)
T ss_dssp HHHHHHHHHHHHHHTSTTCCHHHHCCCGGGS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCCCCCCHH
T ss_pred HHHHHHHHHHHHHhhhhccCcccccCCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHH
Confidence 57889999998876644321 1121222 478999999999999999999999999999987 777775 889998
Q ss_pred HhcCCc-----------cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhc-CCCCeEeccCCCCCCCCHHHHHHHHHH
Q 039882 894 LSCGAG-----------GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILK-KDGFAVKAGWPTYGTPDLILKSANKYL 961 (1142)
Q Consensus 894 ~~~~~~-----------~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~-~~~sv~~~~wP~~~~~d~~l~~~~~~~ 961 (1142)
+..+++ ..++.+++.+++.+++||+|||||+|||||+.|.+ ..+|||++.||++++.|+.++..+
T Consensus 722 ~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~~~~~~~~l~~~~--- 798 (917)
T 1ffy_A 722 DYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKW--- 798 (917)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCCCCCCCHHHHHHH---
T ss_pred HhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCCCCcchHHHHHHH---
Confidence 765432 13457899999999999999999999999999853 257999999999876566666554
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecC
Q 039882 962 QDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNE 1005 (1142)
Q Consensus 962 ~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~ 1005 (1142)
+.+.+||..+.+.++.+|+.|.+ + .+..+.|+|+++.
T Consensus 799 -~~~~~v~~~v~~~~~~~R~~~~i-~-----~~l~~~v~i~~~~ 835 (917)
T 1ffy_A 799 -RTFMNLRDDVNRALETARNEKVI-G-----KSLEAKVTIASND 835 (917)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSC-S-----SGGGEEEEEECCS
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCC-C-----CCCceEEEEEeCC
Confidence 45556666666666666776643 2 2456788888764
No 3
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-149 Score=1423.76 Aligned_cols=790 Identities=35% Similarity=0.631 Sum_probs=683.3
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
+.+++.++|++||++|+++++|+...+.+.+ +++|+|++|||||||.|||||++|++++|+++||+||+||+|+|+
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~----~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPK----EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCG----GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCC----CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 5678999999999999999999987754322 689999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
+||||||+|||..|++++. |. ...++.+.+.
T Consensus 78 ~G~D~~G~pie~~a~~~~~-----~~--------------------------------------------~~~~~~~~~~ 108 (810)
T 1wkb_A 78 MAWHITGSPIVGIAERIKN-----RD--------------------------------------------PKTIWIYRDV 108 (810)
T ss_dssp CCBBCCBSHHHHHHHHHHT-----TC--------------------------------------------HHHHHHHHHT
T ss_pred CccCCCCChHHHHHHHhcc-----cC--------------------------------------------chHHHHHHHH
Confidence 9999999999999986421 21 0123334445
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
+|++++++.+|.+|++|++++...++++|++||+++||+++|.|+|.||.|+++++|+|.+|+++|+||+|.++|+|||.
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~ 188 (810)
T 1wkb_A 109 YKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPV 188 (810)
T ss_dssp SCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETT
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCC
Confidence 68999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecC---
Q 039882 305 DDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISE--- 381 (1142)
Q Consensus 305 ~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~--- 381 (1142)
|+|+|||+||++++++.++.|+.|+|++.+. +.+.+|+||||||||||||+||||||+++|+.+++.+
T Consensus 189 ~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~---------~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~ 259 (810)
T 1wkb_A 189 VGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDK 259 (810)
T ss_dssp TTEECCTTCCSBCSSCCEEEEEEEEEECCSS---------CSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTE
T ss_pred cCCCccHHHHhcCCCCccceeEEEEEEccCC---------CCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCc
Confidence 9999999999999999999999999987641 1247899999999999999999999999999998743
Q ss_pred CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhH
Q 039882 382 TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDY 461 (1142)
Q Consensus 382 ~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy 461 (1142)
+++||++++++.+++||. ..++++.+++|.+|+|++|.||++ ++.+||++++||++++|||+||+|||||++||
T Consensus 260 ~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~G~~l~g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~ 333 (810)
T 1wkb_A 260 EETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDPDNATGVVMSVPAHAPFDH 333 (810)
T ss_dssp EEEEEEEHHHHHHHTTSS-----CEEEEEEECTTTTTTTCEEECSSS-CCEEEEEECTTSCTTSTTSCEEECTTTCHHHH
T ss_pred ceeeeeHHHHHHHHHhhh-----cceEEEEEEEchhhcCCEEECCCC-CCeeEEEecCcccCCCCceeEEeCCCCCHHHH
Confidence 279999999999988863 357889999999999999999998 46899999999999999999999999999999
Q ss_pred HHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccccc
Q 039882 462 MALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVG 541 (1142)
Q Consensus 462 ~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g 541 (1142)
+++++++++++++++|||+++|+.+++++++|+++++|++++..+|++++|.++.|..++++|.+.+|+++|++|+|.+|
T Consensus 334 ~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g 413 (810)
T 1wkb_A 334 VALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVP 413 (810)
T ss_dssp HHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSG
T ss_pred HHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEecc
Confidence 99999999889999999998888889999999999999999999999999999999888999999999999999999989
Q ss_pred CCCCcchHhhhHHHHHHHHHcCCeeeeeccC-ccccccCCCeEEEc-ccCccceecCchHHHHHHHHHHhcCceeCchhh
Q 039882 542 DFAGKKVQDAKPLIRSKLIETGEAIMYSEPE-KRVMSRSGDECVVA-LTDQWYITYGEEEWKRLATECLNSMNLYHDENR 619 (1142)
Q Consensus 542 ~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~-~~v~~Rsg~~~i~~-~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r 619 (1142)
+|+|+.+.+|++.|++.|++.|.+...+++. +|+|||||+||+++ +++|||+++++.+|++++++++++++|+|++++
T Consensus 414 ~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~ 493 (810)
T 1wkb_A 414 PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR 493 (810)
T ss_dssp GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGH
T ss_pred CcCCeEHHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchh
Confidence 9999999999999999999999998777754 69999999999999 799999999876799999999999999999999
Q ss_pred hhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCc-ccCCCCCCCCCCCCCccceEEEe
Q 039882 620 HGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGD-MYGSTTGSIEPGQMTDEVWEFIF 698 (1142)
Q Consensus 620 ~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~-~~g~~~~~~~~e~~~~dv~D~wF 698 (1142)
+++.+|++|++||||||||+||||||||+.|.+++++|+++|+++|++.+.+.... ..| +.++++.+++||+||
T Consensus 494 ~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~d~~~ 568 (810)
T 1wkb_A 494 AQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK-----LDPEKLTPEFFDYIF 568 (810)
T ss_dssp HHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTC-----CCGGGCCHHHHHHHH
T ss_pred chHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcC-----CCHHHcCccceeeee
Confidence 99999999999999999999999999987889999999999999999888765100 011 345567789999999
Q ss_pred eC----CCC---CCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecC
Q 039882 699 CG----GPY---PESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNS 771 (1142)
Q Consensus 699 ds----~~~---~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G 771 (1142)
.+ |.. +..+|+|.+.+..++++|++|||+|+|++|+||+++|+.++++++.++++..+||+.+++||||+.+|
T Consensus 569 ~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G 648 (810)
T 1wkb_A 569 LEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEG 648 (810)
T ss_dssp HSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETT
T ss_pred ccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCC
Confidence 64 111 11357777666556678999999999999999999999999999999999888999999999999999
Q ss_pred ccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039882 772 EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANT---GILRLTKEIAWMEEVLAVESSLRTGPPST 848 (1142)
Q Consensus 772 ~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~---~~~kl~n~~~~~~~~~~~~~~~~~~~~~~ 848 (1142)
+|||||+||||+|.++|++||||++|||+++++++.+|++|+++.++. +++|++|+++++.+ . . .+......
T Consensus 649 ~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~---~-~-~~~~~~~~ 723 (810)
T 1wkb_A 649 QKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE---Y-E-VKGNVELK 723 (810)
T ss_dssp BCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHT---C-C-CCSCCCCC
T ss_pred eehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh---c-c-CcccccCC
Confidence 999999999999999999999999999999777899999999998875 45566666554422 1 1 11111224
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCcc-ch-HHHHHHHHHHHHHHhhchhhHHHH
Q 039882 849 YADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGG-LN-RDLVWRFMDVQTRLITPICPHYAE 926 (1142)
Q Consensus 849 ~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~-~~-~~~l~~~l~~l~~lLaPi~P~~aE 926 (1142)
..|+|++++++.++++++++|++|+|+.|+..+++++.+.+|+|++.+++.. .+ +.+++++++.+++||+|||||+||
T Consensus 724 ~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~~~~~~~~~l~~~l~~l~~lLaP~~P~~aE 803 (810)
T 1wkb_A 724 DIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICE 803 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7899999999999999999999999999998756678888999998776321 34 678999999999999999999999
Q ss_pred HHHHHh
Q 039882 927 YVWRVI 932 (1142)
Q Consensus 927 eiw~~L 932 (1142)
|||+.|
T Consensus 804 elw~~L 809 (810)
T 1wkb_A 804 ELWEKL 809 (810)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 999986
No 4
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3e-144 Score=1364.42 Aligned_cols=717 Identities=20% Similarity=0.285 Sum_probs=611.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCcee
Q 039882 63 FARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVL 142 (1142)
Q Consensus 63 f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl 142 (1142)
.+.++++.++|++||++|++ ++|+...+.. +++|+|++|||||||.|||||++|++++|+++||+||+||+|+
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~------~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl 75 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSG------KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAV 75 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCC------SCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCC------CCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccc
Confidence 45789999999999999999 9999876432 6899999999999999999999999999999999999999999
Q ss_pred ecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHH
Q 039882 143 LPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIM 222 (1142)
Q Consensus 143 ~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~ 222 (1142)
|+|||||||||||.+|++. +...|. .++++++++|+++|
T Consensus 76 ~~~G~D~~Glp~e~~vek~---l~~~g~---------------------~~~~~~~~~f~~~~----------------- 114 (862)
T 1gax_A 76 WLPGTDHAGIATQVVVERL---LLKEGK---------------------TRHDLGREKFLERV----------------- 114 (862)
T ss_dssp EECEEBCCTHHHHHHHHTT---TTTTTS---------------------CCSCCCTTHHHHHH-----------------
T ss_pred cccccCCCCcHHHHHHHHH---HHHcCC---------------------ChHHcCHHHHHHHH-----------------
Confidence 9999999999999998752 111232 23455666666654
Q ss_pred HhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeecc
Q 039882 223 RSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYS 302 (1142)
Q Consensus 223 ~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~ 302 (1142)
++|++++...+++||++||+++||+|+|+||| |.|.++|+|+|.+|+++||||+|.++|+||
T Consensus 115 ----------------~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d--~~~~~~v~~~F~~L~~kGliYrg~~~v~wc 176 (862)
T 1gax_A 115 ----------------WQWKEESGGTILKQLKRLGASADWSREAFTMD--EKRSRAVRYAFSRYYHEGLAYRAPRLVNWC 176 (862)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTS--HHHHHHHHHHHHHHHTTSSEEEECCEEEEE
T ss_pred ----------------HHHHHHHHHHHHHHHHHhCccccCCCCcccCC--HHHHHHHHHHHHHHHHCCCEEecccccccC
Confidence 56777888899999999999999999999998 999999999999999999999999999999
Q ss_pred CCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCC
Q 039882 303 PLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISET 382 (1142)
Q Consensus 303 p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~ 382 (1142)
|.|+|+|||+||+|.+..++.+| |+|++.+ . .+|+|||||||||+||+||||||++
T Consensus 177 p~~~T~Lsd~EV~~~e~~g~~~~--v~f~~~~-----------~-~~l~v~TTrPeTl~g~~avav~P~~---------- 232 (862)
T 1gax_A 177 PRCETTLSDLEVETEPTPGKLYT--LRYEVEG-----------G-GFIEIATVRPETVFADQAIAVHPED---------- 232 (862)
T ss_dssp TTTTEEECGGGEEECCEEEEEEE--EECCCSS-----------S-CCCEEEESCSGGGTTCCCEEECSSC----------
T ss_pred CCcCccccccccccccccceEEE--EEEEecC-----------C-CEEEEEeCCccccccceEEEECCCc----------
Confidence 99999999999999987777554 7787654 1 4899999999999999999999993
Q ss_pred cEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHH
Q 039882 383 DVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYM 462 (1142)
Q Consensus 383 e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~ 462 (1142)
+ +| ++|+|+++.+|++ ++.+||++++||++++|||+||+|||||++||+
T Consensus 233 ~------------ry------------------~~l~G~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~ 281 (862)
T 1gax_A 233 E------------RY------------------RHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYE 281 (862)
T ss_dssp C------------TT------------------CSCTTCCCBCTTC-CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHH
T ss_pred c------------HH------------------HHHcCCEEECCCC-CCeeeEEeccccccCCCCcceEecCCCCchHHH
Confidence 3 34 4789999999998 578999999999999999999999999999999
Q ss_pred HHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccc--
Q 039882 463 ALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLV-- 540 (1142)
Q Consensus 463 ~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~-- 540 (1142)
++ ++|||+ ++++|+ +.|++++ .+
T Consensus 282 ~~----------~~~~L~--------~~~~id--~~G~~~~-----------------------------------~~~~ 306 (862)
T 1gax_A 282 IG----------ERHGLK--------PVSVIN--LEGRMEG-----------------------------------ERVP 306 (862)
T ss_dssp HH----------HHTTCC--------CCCSBC--TTSBBCS-----------------------------------SSSC
T ss_pred HH----------HHcCCC--------ccceeC--CCCcccc-----------------------------------ccCC
Confidence 76 679974 445553 4455432 14
Q ss_pred cCCCCcchHhhhHHHHHHHHHcCCeeeeec--cCccccccCCCeEEEcccCccceecCchHHHHHHHHHHh--cCceeCc
Q 039882 541 GDFAGKKVQDAKPLIRSKLIETGEAIMYSE--PEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLN--SMNLYHD 616 (1142)
Q Consensus 541 g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e--~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~--~v~~~P~ 616 (1142)
|+|.|+++++||+.|+++|++.|+++.... +.+|+|||||+||++++++|||++++ .|+++++++++ +++|+|+
T Consensus 307 g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~--~~~~~~l~~v~~~~~~~~P~ 384 (862)
T 1gax_A 307 EALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMR--PLAEEVLKGLRRGDIAFVPE 384 (862)
T ss_dssp TTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHH--HHHHHHHHHHHHTCCEESSS
T ss_pred cccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhH--HHHHHHHHHHHcCCceEcCH
Confidence 789999999999999999999999986543 67899999999999999999999996 79999999995 6999999
Q ss_pred hhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEE
Q 039882 617 ENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEF 696 (1142)
Q Consensus 617 ~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~ 696 (1142)
++++++.+|+++++||||||||+||||||+ |++++ +.++|++.+. +++.... ....||.-.. ..++||||+
T Consensus 385 ~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~---w~~~~--~~~i~v~~~~--~l~~~~~-~~~~~g~~~~-~r~~DvlDt 455 (862)
T 1gax_A 385 RWKKVNMDWLENVKDWNISRQLWWGHQIPA---WYCED--CQAVNVPRPE--RYLEDPT-SCEACGSPRL-KRDEDVFDT 455 (862)
T ss_dssp HHHHHHHHHHHTCCCCCCBCCCSSSCCCCC---EEETT--TCCEECCCGG--GTTCCCC-SCTTTCCSCE-EECCCCBCH
T ss_pred HHHHHHHHHHhcccceeEecccCCCcccCc---eecCC--CCEEEEeccc--cccccch-hhhhcCchhe-ecCCcccce
Confidence 999999999999999999999999999995 66664 3578887532 2222111 1122331111 125799999
Q ss_pred EeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccc
Q 039882 697 IFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKM 774 (1142)
Q Consensus 697 wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KM 774 (1142)
|||||++|++ .+||.+ .++|++|||+|+|++|+||+|+|+.++++.+.++++..|| ++|++||||+ .+|+||
T Consensus 456 WfdS~~~~~~~~~~p~~-----~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pf-k~v~~hG~vld~~G~KM 529 (862)
T 1gax_A 456 WFSSALWPLSTLGWPEE-----TEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPF-KTVLLHGLVLDEKGQKM 529 (862)
T ss_dssp HHHHTSCTTGGGTTTSC-----CHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSB-SEEEEECCEECTTSCBC
T ss_pred eeccCCcchhhccCCCc-----hHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcc-cEEEEeeeEEcCCCCCc
Confidence 9999999986 578854 3578999999999999999999999999999888888777 9999999999 799999
Q ss_pred cccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---HHHHHHHHHHHHHHHHHhhhccCCCCCCCChhh
Q 039882 775 SKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---TGILRLTKEIAWMEEVLAVESSLRTGPPSTYAD 851 (1142)
Q Consensus 775 SKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D 851 (1142)
|||+||+|+|.++|++||||++||||++++++++|++|+++.+. ++++++||+.+|+...+...... ... ....|
T Consensus 530 SKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~-~~~-~~~~D 607 (862)
T 1gax_A 530 SKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK-EDT-PTLAD 607 (862)
T ss_dssp CTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC-BCC-CCHHH
T ss_pred cccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-ccc-CCHHH
Confidence 99999999999999999999999999998789999999999875 56889999988877654321111 112 35789
Q ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCCcc-----chHHHHHHHHHHHHHHhhchhhHH
Q 039882 852 RVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGAGG-----LNRDLVWRFMDVQTRLITPICPHY 924 (1142)
Q Consensus 852 ~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~~~-----~~~~~l~~~l~~l~~lLaPi~P~~ 924 (1142)
+|+++++++++++++++|++|+|++|++. +|+|. .++|+|++.++++. .++.+++++|+.+++||||||||+
T Consensus 608 ~~il~~l~~~~~~v~~a~e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l~~~l~~~~~lL~P~~P~~ 686 (862)
T 1gax_A 608 RFMRSRLSRGVEEITALYEALDLAQAARE-VYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFL 686 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhccHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999999999999987 67775 68999998887642 356789999999999999999999
Q ss_pred HHHHHHHhhcCCCCeEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039882 925 AEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQI 976 (1142)
Q Consensus 925 aEeiw~~L~~~~~sv~~~~wP~~~~~d~~l~~~~~~~~~~i~~iR~~~~~~~ 976 (1142)
|||||+.|. ..+||++++||+.+..|+.++..++.+++++..+|+++....
T Consensus 687 aEeiw~~L~-~~~sv~~~~wP~~~~~d~~~~~~~~~~~~v~~~~r~~r~~~~ 737 (862)
T 1gax_A 687 TSELYQALT-GKEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALKAEAG 737 (862)
T ss_dssp HHHHHHHHH-CCSCGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCeEEecCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999985 367999999999874488899999999999999999988764
No 5
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=6.4e-143 Score=1361.82 Aligned_cols=760 Identities=19% Similarity=0.253 Sum_probs=621.3
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
|++++.++|++||++|+++++|+...+.+.+ +++|++++|||||||.|||||++|++++|+++||+||+||+|+|+
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~----~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~ 81 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKG----GPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRR 81 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTT----SCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCE
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCC----CCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccc
Confidence 8999999999999999999999987542222 689999999999999999999999999999999999999999999
Q ss_pred ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882 145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS 224 (1142)
Q Consensus 145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~ 224 (1142)
+||||||||||.+|+| ++|..+ .+. .+.
T Consensus 82 ~G~D~~Glpie~~a~k------~l~~~~--------------------------~~~--------------------~~~ 109 (821)
T 1ile_A 82 AGWDTHGLPVELEVEK------KLGLKS--------------------------KRE--------------------IEA 109 (821)
T ss_dssp EEECCCHHHHHHHHHH------HTTCCS--------------------------HHH--------------------HHH
T ss_pred ccccCCCchHHHHHHH------Hhcccc--------------------------cch--------------------Hhh
Confidence 9999999999999986 235321 000 001
Q ss_pred cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL 304 (1142)
Q Consensus 225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~ 304 (1142)
+ +++++.+ .|.+|++.+...|+++|++||+++||+|+|.||| |.|+++++|+|.+|+++|+||+|.++|+|||.
T Consensus 110 ~--g~~~f~~--~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~ 183 (821)
T 1ile_A 110 Y--GIERFNQ--ACRESVFTYEKEWEAFTERIAYWVDLEDAYATLE--PTYIESIWWSLKNLFDRGLLYRDHKVVPYCPR 183 (821)
T ss_dssp H--CHHHHHH--HHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTS--HHHHHHHHHHHHHHHHTTCEEEECCEEEEETT
T ss_pred c--CHHHHHH--HHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECC--HHHHHHHHHHHHHHHHcCCeeecCcceEecCC
Confidence 1 1222222 1678899999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCccccccccc--cCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCC
Q 039882 305 DDQPCADHDRA--SGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISET 382 (1142)
Q Consensus 305 ~~t~lad~ev~--~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~ 382 (1142)
|+|+|||+||. +.+..+++. +|+|++.+..+. .+.+.+|+||||||||||||+||||||+++|+.++. ++
T Consensus 184 ~~t~Lad~ev~~G~~~~~~~~~--~v~f~~~~~~~~-----~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~-~~ 255 (821)
T 1ile_A 184 CGTPLSSHEVALGYKEIQDPSV--YVRFPLKEPKKL-----GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV-GD 255 (821)
T ss_dssp TTEECCHHHHHHTEEEEEEEEE--EEEEEBSSGGGG-----TCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEE-TT
T ss_pred CCCcccHhHhhcCcccccCceE--EEEEEecCCccc-----CCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEc-CC
Confidence 99999999996 555556654 477877541100 113589999999999999999999999999999998 46
Q ss_pred cEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCC--CceEEEccCCccccCCCCCccccCCCCChhh
Q 039882 383 DVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSF--NEVIYALPMLTILTDKGTGIVTSVPSDAPDD 460 (1142)
Q Consensus 383 e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~--~~~v~il~~~~V~~~~GTGiV~~~Pah~~~D 460 (1142)
++||+++.+++++.. ..++++.+++|++|+|+.+.||+.. ++.+||++++||++++|||+||+|||||++|
T Consensus 256 ~~~i~a~~~~~~~~~-------~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D 328 (821)
T 1ile_A 256 EALILEEGLGRKLLG-------EGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 328 (821)
T ss_dssp EEEEEETTHHHHHTC-------TTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHH
T ss_pred cEEEehHHHHHHHHh-------hCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHH
Confidence 899999998887542 2578999999999999999999963 5789999999999999999999999999999
Q ss_pred HHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccc
Q 039882 461 YMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLV 540 (1142)
Q Consensus 461 y~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~ 540 (1142)
|+++ ++|||+ ++.+| ++.|++. + .
T Consensus 329 ~~~~----------~~~~l~--------~~~~i--d~~G~~~--------------------------------~----~ 352 (821)
T 1ile_A 329 LETA----------RVYGLP--------LLKTV--DEEGKLL--------------------------------V----E 352 (821)
T ss_dssp HHHH----------HHTTCC--------CCCCB--CTTSBBC--------------------------------S----G
T ss_pred HHHH----------HHcCCC--------cceeE--CCCCcCc--------------------------------c----c
Confidence 9976 679974 33444 3445432 1 2
Q ss_pred cCCCCcchHhhhHHHHHHHHHcCCeeeee--ccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchh
Q 039882 541 GDFAGKKVQDAKPLIRSKLIETGEAIMYS--EPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDEN 618 (1142)
Q Consensus 541 g~~~G~~v~ea~~~I~~~L~~~g~l~~~~--e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~ 618 (1142)
| |+|+.+.+|++.|+++|++.|.++... +|++|+|||||+||++++++|||++++ +|++++++++++++|+|+++
T Consensus 353 ~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~--~~~~~~~~~~~~~~~~P~~~ 429 (821)
T 1ile_A 353 P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNT--LFKDELIRNNQEIHWVPPHI 429 (821)
T ss_dssp G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGG--GGHHHHHHHHHHSEESSGGG
T ss_pred C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchH--HHHHHHHHHhcCeEEECchh
Confidence 5 999999999999999999999998765 467899999999999999999999996 69999999999999999999
Q ss_pred h-hhHHHhhhcCCceeeecccCCCccCC-CCC-----ceeeccCCCcce---eee-hhhhhhhcccCc-----ccCCCCC
Q 039882 619 R-HGFEHTLGWLNQWACSRSFGLGTRIP-WDP-----QFLVESLSDSTI---YMA-YYTVAHMLHKGD-----MYGSTTG 682 (1142)
Q Consensus 619 r-~~~~~~i~~l~DW~ISRqr~WG~PIP-~d~-----~~~iesl~d~~i---y~~-~~ti~~~l~~~~-----~~g~~~~ 682 (1142)
+ +++.+||++|+||||||||+|||||| |++ .+++++++++.. .+. .| +-++... .... ||
T Consensus 430 ~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~---~~l~~~~~d~~~~~~~-~g 505 (821)
T 1ile_A 430 KEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEP---FDPHRPYVDQVELACA-CG 505 (821)
T ss_dssp TTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSS---CCCSHHHHTTCEEECT-TS
T ss_pred hHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccch---hhhccccccccccCCC-CC
Confidence 5 68999999999999999999999999 421 233333332200 000 00 0000000 0011 22
Q ss_pred CCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEE
Q 039882 683 SIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGF 761 (1142)
Q Consensus 683 ~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v 761 (1142)
. +-+..+||||||||||.+|++ .++|.+. +++|++|||+|+|++|+||+|||+.++++.+.++++..|| ++|
T Consensus 506 ~--~~~r~~dvld~WfdS~~~~~~~~~~p~~~----~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf-~~v 578 (821)
T 1ile_A 506 G--TMRRVPYVIDVWYDSGAMPFASLHYPFEH----EEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAF-KNV 578 (821)
T ss_dssp S--EEEECSCBCCHHHHHHHHHHHTTTTTTSC----HHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSB-SEE
T ss_pred C--chhhcccccceecccccchHhhcCCCccc----hHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCc-ceE
Confidence 1 112357999999999987653 4676532 4578999999999999999999999999999999988776 999
Q ss_pred EEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHH----HHHHHHHHHHHHHHH--
Q 039882 762 RCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANT----GILRLTKEIAWMEEV-- 834 (1142)
Q Consensus 762 ~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~----~~~kl~n~~~~~~~~-- 834 (1142)
++|||++ .+|+|||||+||||+|.++|++||||++|||+++.+++.+|++|+++.+.. ++++++|+++|+...
T Consensus 579 ~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~ 658 (821)
T 1ile_A 579 ICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYAN 658 (821)
T ss_dssp EEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999 599999999999999999999999999999999988899999999998654 578899998886532
Q ss_pred Hhhhcc-C--CCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH--hhhHHHHHhcCC----------c
Q 039882 835 LAVESS-L--RTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ--AARDEYRLSCGA----------G 899 (1142)
Q Consensus 835 ~~~~~~-~--~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~--~~~~~Y~~~~~~----------~ 899 (1142)
+..... . ..... ...|+|++++++.++++++++|++|+|++|++. +++|. ..+|+|++..++ +
T Consensus 659 ~~~~~~~~~~~~~~~-~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r 736 (821)
T 1ile_A 659 LDRPDLKNPPPPEKR-PEMDRWLLARMQDLIQRVTEALEAYDPTTSARA-LRDFVVEDLSQWYVRRNRRRFWKNEDALDR 736 (821)
T ss_dssp HHCCCTTSCCCSTTS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTTTSST
T ss_pred cccCCcccccccccC-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCcHHH
Confidence 221110 0 01122 478999999999999999999999999999987 67777 789999875422 1
Q ss_pred cchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcC----CC-CeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 039882 900 GLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK----DG-FAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLL 972 (1142)
Q Consensus 900 ~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~----~~-sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~ 972 (1142)
..++.+++.+|+.+++||+|||||+|||||+.|.+. .+ ||+++.||++++. |+.++..++.+++++..+|+++
T Consensus 737 ~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r~~r 816 (821)
T 1ile_A 737 EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAAR 816 (821)
T ss_dssp THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 235578999999999999999999999999998542 35 9999999998764 8899999999999998888765
Q ss_pred H
Q 039882 973 Q 973 (1142)
Q Consensus 973 ~ 973 (1142)
+
T Consensus 817 ~ 817 (821)
T 1ile_A 817 A 817 (821)
T ss_dssp T
T ss_pred H
Confidence 4
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=3.3e-119 Score=1141.61 Aligned_cols=682 Identities=22% Similarity=0.337 Sum_probs=511.4
Q ss_pred CCCChHHHHHHHHHHHHhCCccccCC-CCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 65 RRDRLLEIESKVHTWWEESNVFNAEP-GERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 65 ~r~~l~~~E~~~~~~W~~~~~f~~~~-~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
|++++.++|++||++|+++++|+... +.. +++|++++|||||||.|||||++|++++|+++||+||+||+|+|
T Consensus 2 ~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~------~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~ 75 (878)
T 2v0c_A 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGG------RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLH 75 (878)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCSCCC---------EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccCcccCC------CCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEe
Confidence 47899999999999999999999876 322 68899999999999999999999999999999999999999999
Q ss_pred cccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHH
Q 039882 144 PFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMR 223 (1142)
Q Consensus 144 ~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~ 223 (1142)
++||||||+|||.+|++ .|++
T Consensus 76 ~~G~D~~Glpie~~a~k-------~g~~---------------------------------------------------- 96 (878)
T 2v0c_A 76 PMGWDAFGLPAENAALK-------FGVH---------------------------------------------------- 96 (878)
T ss_dssp CCCBCCSSHHHHHHHHH-------TTCC----------------------------------------------------
T ss_pred ecccCcccHHHHHHHHH-------cCCC----------------------------------------------------
Confidence 99999999999998864 2431
Q ss_pred hcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccC
Q 039882 224 SFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSP 303 (1142)
Q Consensus 224 ~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p 303 (1142)
|.+|++.+...++++|++||+++||+|+|.|++ |.|.++++|+|.+|+++|+||+|.++|+|||
T Consensus 97 --------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p 160 (878)
T 2v0c_A 97 --------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCP 160 (878)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEET
T ss_pred --------------HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCC--HHHHHHHHHHHHHHHHCCCEEEcceeEEEeC
Confidence 346677777889999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCccccccccccCCcc--ccccceeE-----eeeccC------------CCCCCc-----------------ccCCCCc
Q 039882 304 LDDQPCADHDRASGEGV--QPQDYTLI-----KMEVLQ------------PFPAKF-----------------GPLEGKK 347 (1142)
Q Consensus 304 ~~~t~lad~ev~~~e~~--~~~~y~~i-----kf~~~~------------~~~~~~-----------------~~l~~~~ 347 (1142)
.|+|+|||+||++|.+. +...++.. -|++.+ +||+.+ ..+.+.+
T Consensus 161 ~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~ 240 (878)
T 2v0c_A 161 KCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKE 240 (878)
T ss_dssp TTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSS
T ss_pred CCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCC
Confidence 99999999999876532 21111110 011110 022211 1123446
Q ss_pred eEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCC--ee-eEeEecceecCCeEe
Q 039882 348 VYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKP--TC-LVELTGYDLIGLPLK 424 (1142)
Q Consensus 348 ~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~--~~-~~~~~G~~L~G~~~~ 424 (1142)
.+|+||||||||||||+||+|||+++|+...++ ++. ...+.. |..-....... .+ ..+++|. |+|+.+.
T Consensus 241 ~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~-~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~ 312 (878)
T 2v0c_A 241 VRIPVFTTRPDTLFGATFLVLAPEHPLTLELAA-PEK----REEVLA--YVEAAKRKTEIERQAEGREKTGV-FLGAYAL 312 (878)
T ss_dssp CEEEEEESCGGGGGGCCEEEECTTSHHHHHHSC-GGG----HHHHHH--HHHHHHTSCHHHHHCSSSCCCCE-EEEEEEE
T ss_pred ceEEEEeCCchhhhCcEEEEEcCCCeeeehhcc-chh----HHHHHH--HHHHHhhhhhhhhhhccceeeeE-ecCcEEE
Confidence 789999999999999999999999999876542 221 111111 11100000100 11 4577888 9999999
Q ss_pred cCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhh
Q 039882 425 SPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAE 504 (1142)
Q Consensus 425 ~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~ 504 (1142)
||++ ++.+||+.++||++++|||+||+|||||++||+++ ++|||+ ++++|+.++ ++..
T Consensus 313 ~P~~-~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~----------~k~~L~--------i~~vi~~~~-~~~~-- 370 (878)
T 2v0c_A 313 NPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFA----------RKFGLP--------IKKVIERPG-EPLP-- 370 (878)
T ss_dssp CTTT-CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHH----------HHHTCC--------CCCCEECSS-SCCC--
T ss_pred CCCC-CCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHH----------HHcCCC--------ceeeeCCCC-cccc--
Confidence 9997 57899999999999999999999999999999865 789974 456665432 1100
Q ss_pred hhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeE
Q 039882 505 RVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDEC 583 (1142)
Q Consensus 505 ~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~ 583 (1142)
+| + +.+|++ +|+|. .|+|+|+.+.+|+++|++.|++.|++.. ++
T Consensus 371 -----------~~---~----~~~~~~---~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~------~v-------- 415 (878)
T 2v0c_A 371 -----------EP---L----ERAYEE---PGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG------RV-------- 415 (878)
T ss_dssp -----------SS---C----SSCCCS---CCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE------EE--------
T ss_pred -----------cc---c----cccccC---CeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCC------ce--------
Confidence 00 0 112332 57774 7899999999999999999999998531 11
Q ss_pred EEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccC-----CCc
Q 039882 584 VVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESL-----SDS 658 (1142)
Q Consensus 584 i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl-----~d~ 658 (1142)
.+ +|+||||||||+||+|||+ |+|+++ ++.
T Consensus 416 ~~------------------------------------------rlrDW~ISRQR~WG~PIPi---~~~~~~~~v~v~~~ 450 (878)
T 2v0c_A 416 TY------------------------------------------RLRDWLISRQRYWGTPIPM---VHCEACGVVPVPEE 450 (878)
T ss_dssp EE------------------------------------------SCCCEECEESCSSSEECCE---EEETTTEEEECCGG
T ss_pred EE------------------------------------------ecccchhhcccccCCcccE---EEECCCCeEecCHH
Confidence 11 3789999999999999994 334321 111
Q ss_pred ceeeehhhhhhh--ccc--C-------c---ccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHh-hhHHhhh
Q 039882 659 TIYMAYYTVAHM--LHK--G-------D---MYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILN-RMKQEFE 722 (1142)
Q Consensus 659 ~iy~~~~ti~~~--l~~--~-------~---~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~-~~~~ef~ 722 (1142)
.+.+....+..+ +.. + + .....||. +-...+||||+||||+ |++. .++|...-. -.+++++
T Consensus 451 ~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~--~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~ 527 (878)
T 2v0c_A 451 ELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGG--PAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKAN 527 (878)
T ss_dssp GCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCS--EEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHH
T ss_pred HccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCC--cceecccccccccccc-chhhhccCccccccccCHHHHc
Confidence 111000000010 000 0 0 00112221 1122579999999996 5432 233332100 0146789
Q ss_pred hcCCcceEEeecccchhhHHHHHHHHHHHhcCC------CCCcEEEEeeEEee---------------------------
Q 039882 723 YWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR------HWPRGFRCNGHIML--------------------------- 769 (1142)
Q Consensus 723 ~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~------~~Pk~v~~hG~vl~--------------------------- 769 (1142)
+|||+|+|++|+||+++||.|+.|++.+|++.+ || ++|++||||+.
T Consensus 528 ~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pf-k~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (878)
T 2v0c_A 528 AWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPF-QGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIP 606 (878)
T ss_dssp HHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSB-SBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCS
T ss_pred cCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCch-HhheecceEeccceeccccccccceecccccccccccc
Confidence 999999999999999999999999998887533 55 99999999984
Q ss_pred --------------------cC-------ccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHH---H
Q 039882 770 --------------------NS-------EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN---T 819 (1142)
Q Consensus 770 --------------------~G-------~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~---~ 819 (1142)
+| +|||||+||+|+|.++|++||||++|||+++++++.+|++|+++.+. +
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~ 686 (878)
T 2v0c_A 607 ESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWR 686 (878)
T ss_dssp CSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH
T ss_pred CchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHH
Confidence 89 99999999999999999999999999999997789999999999876 4
Q ss_pred HHHHHHHHHHHHHHHHhh-hccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCC
Q 039882 820 GILRLTKEIAWMEEVLAV-ESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGA 898 (1142)
Q Consensus 820 ~~~kl~n~~~~~~~~~~~-~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~ 898 (1142)
+++|++|++++....+.. ...+....+ ...|+|+++++++++++++++|++|+|++|++. +|+|.+..+.|+....
T Consensus 687 ~l~Rl~n~~~~~~~~~~~~~~~~~~~~l-~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~-l~~f~~~l~k~~~~~~- 763 (878)
T 2v0c_A 687 FLNRIYRRVAEDREALLETSGVFQAEAL-EGKDRELYGKLHETLKKVTEDLEALRFNTAIAA-LMEFLNALYEYRKDRP- 763 (878)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhcccccccccCcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHhhhcccch-
Confidence 577788777654433210 011111222 578999999999999999999999999999976 8888888888865421
Q ss_pred ccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCCCC
Q 039882 899 GGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGT 949 (1142)
Q Consensus 899 ~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~~~ 949 (1142)
...+++++++.+++||+|||||+|||||+.| + .+||+.++||+.++
T Consensus 764 ---~~~~l~~~l~~l~~LLaPf~P~~aEElw~~L-g-~~sv~~~~wP~~d~ 809 (878)
T 2v0c_A 764 ---VTPVYRTAIRYYLQMLFPFAPHLAEELWHWF-W-PDSLFEAGWPELDE 809 (878)
T ss_dssp ---SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHH-C-SSCGGGSCCCCCCG
T ss_pred ---hHHHHHHHHHHHHHHHcccchHHHHHHHHHc-C-CCceeecCCCCCCH
Confidence 1268999999999999999999999999998 5 78999999998764
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=2.1e-118 Score=1123.93 Aligned_cols=680 Identities=24% Similarity=0.350 Sum_probs=489.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCc
Q 039882 61 KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGAN 140 (1142)
Q Consensus 61 ~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~ 140 (1142)
..++++|++.++|++||++|+++++|+...+.. +++|++++|||||||.|||||++|++++|+++||+||+||+
T Consensus 19 ~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~------~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~ 92 (880)
T 4arc_A 19 SHMQEQYRPEEIESKVQLHWDEKRTFEVTEDES------KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKN 92 (880)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTT------SCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccccCChHHHHHHHHHHHHhcCCcccCCcCC------CCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCc
Confidence 456789999999999999999999999876432 68999999999999999999999999999999999999999
Q ss_pred eeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHH
Q 039882 141 VLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWE 220 (1142)
Q Consensus 141 Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 220 (1142)
|+|++||||||+|||..|++ .|++
T Consensus 93 V~~~~G~D~~Glpie~~a~~-------~g~~------------------------------------------------- 116 (880)
T 4arc_A 93 VLQPIGWDAFGLPAEGAAVK-------NNTA------------------------------------------------- 116 (880)
T ss_dssp EECCCEECCCSTHHHHHHHH-------TTSC-------------------------------------------------
T ss_pred eEEecCccccCcHHHHHHHH-------cCCC-------------------------------------------------
Confidence 99999999999999998853 2431
Q ss_pred HHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeee
Q 039882 221 IMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTI 300 (1142)
Q Consensus 221 i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~ 300 (1142)
|..|++.+...+++||++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||+|.++|+
T Consensus 117 -----------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d--~~~~~~v~~~f~~L~ekGliY~~~~~v~ 177 (880)
T 4arc_A 117 -----------------PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCT--PEYYRWEQKFFTELYKKGLVYKKTSAVN 177 (880)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTS--HHHHHHHHHHHHHHHHTTCEEEEEECC-
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCC--HHHHHHHHHHHHHHHHCCCEEEeceeEe
Confidence 345566666788999999999999999999998 9999999999999999999999999999
Q ss_pred ccCCCCccccccccccCCcc----------ccccceeEeee-----------ccCCCCCCcc-----------------c
Q 039882 301 YSPLDDQPCADHDRASGEGV----------QPQDYTLIKME-----------VLQPFPAKFG-----------------P 342 (1142)
Q Consensus 301 w~p~~~t~lad~ev~~~e~~----------~~~~y~~ikf~-----------~~~~~~~~~~-----------------~ 342 (1142)
|||.|+|+||++|+..|.+. ..++| +++. ..++||+.++ .
T Consensus 178 wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f--~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~ 255 (880)
T 4arc_A 178 WCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWF--IKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFN 255 (880)
T ss_dssp -----------------------------CEEEEE--ECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ecCCcCCEecchhhhcCcCcCCCCccEEEEccceE--EeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEE
Confidence 99999999999998765431 12322 1111 0112443221 1
Q ss_pred CCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCC--CCee-eEeEecceec
Q 039882 343 LEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPK--KPTC-LVELTGYDLI 419 (1142)
Q Consensus 343 l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~--~~~~-~~~~~G~~L~ 419 (1142)
+.+.+.+|+|||||||||||+++|+|||+++|+...+.++. .+. .|..-....+ +..+ ..+.+|. ++
T Consensus 256 ~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~g~-~~ 325 (880)
T 4arc_A 256 VNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP-------ELA--AFIDECRNTKVAEAEMATMEKKGV-DT 325 (880)
T ss_dssp ETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCH-------HHH--HHHTC----------------CEE-EE
T ss_pred ecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChH-------HHH--HHHHHHhccCchhhhhccceeecc-cc
Confidence 23445689999999999999999999999999876543221 111 1111011000 1111 2367786 78
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
|+.+.||++ ++.+||+.++||++++|||+||+|||||++||+++ ++|||+ +++||+.. .|
T Consensus 326 g~~~~~P~~-~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~----------~~~~Lp--------i~~vi~~~-~~ 385 (880)
T 4arc_A 326 GFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFA----------SKYGLN--------IKPVILAA-DG 385 (880)
T ss_dssp EEEEECTTT-CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHH----------HHHTCC--------CCCCBCCT-TS
T ss_pred CcEEecCCC-CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHH----------HHcCCC--------ceEeeccC-cc
Confidence 999999998 57899999999999999999999999999999854 789974 44555421 12
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCcccccc
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSR 578 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~R 578 (1142)
.-.. + .+.+|.+ +|+|. .|+|.|+.+.+|+++|++.|++.|++.. ++
T Consensus 386 ~~~~--------~------------~~~~~~~---~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~------~v--- 433 (880)
T 4arc_A 386 SEPD--------L------------SQQALTE---KGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER------KV--- 433 (880)
T ss_dssp CCCC--------C------------SSSCCCS---CCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE------EE---
T ss_pred cccc--------c------------ccccccC---CceeecCcccCCCCHHHHHHHHHHHHHHcCCcce------eE---
Confidence 1000 0 0122332 57664 7899999999999999999999998752 11
Q ss_pred CCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCc
Q 039882 579 SGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDS 658 (1142)
Q Consensus 579 sg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~ 658 (1142)
+| +++|||||||||||+|||. |+|+++.
T Consensus 434 ---------------~y--------------------------------rlrDW~iSRQRyWG~PIPi---~~c~~cg-- 461 (880)
T 4arc_A 434 ---------------NY--------------------------------RLRDWGVSRQRYWGAPIPM---VTLEDGT-- 461 (880)
T ss_dssp ---------------EE--------------------------------SCCCEECEESCSSSCBCCE---EEETTSC--
T ss_pred ---------------EE--------------------------------EcccceeeeeeccCCcceE---EEECCCC--
Confidence 11 3789999999999999993 4454432
Q ss_pred ceeeehhhhhhhccc-Cccc--CC-----------CC-CCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhh-hHHhh
Q 039882 659 TIYMAYYTVAHMLHK-GDMY--GS-----------TT-GSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNR-MKQEF 721 (1142)
Q Consensus 659 ~iy~~~~ti~~~l~~-~~~~--g~-----------~~-~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~-~~~ef 721 (1142)
.+.+........+.. ..+. |+ .| |. +-...+||||+||||+ |++. .++|...-.. .++++
T Consensus 462 ~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~--~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~ 538 (880)
T 4arc_A 462 VMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGM--PALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAA 538 (880)
T ss_dssp EEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSS--EEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHH
T ss_pred eEeCChHHCccccchhcccCCCCCchHhCccceeeccCCC--cceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHH
Confidence 111111111111110 0000 10 01 10 1123579999999996 5542 3344321000 14678
Q ss_pred hhcCCcceEEeecccchhhHHHHHHHHHHHhcCC------CCCcEEEEeeEEe--------ecCc---------------
Q 039882 722 EYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR------HWPRGFRCNGHIM--------LNSE--------------- 772 (1142)
Q Consensus 722 ~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~------~~Pk~v~~hG~vl--------~~G~--------------- 772 (1142)
++|||+|+|++|.||+..||.|+.|++.+|++.+ || +++++||||+ .+|+
T Consensus 539 ~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePF-k~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~ 617 (880)
T 4arc_A 539 NYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPA-KQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDE 617 (880)
T ss_dssp HHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSE-EEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECT
T ss_pred hccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCCh-HHeEEeceEeecceeccccCCcccccCHHHhcccccc
Confidence 9999999999999999999999999999887654 44 9999999996 3566
Q ss_pred ---------------------cccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHH---HHHHHHHHH
Q 039882 773 ---------------------KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANT---GILRLTKEI 828 (1142)
Q Consensus 773 ---------------------KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~---~~~kl~n~~ 828 (1142)
|||||+||||+|.++|++||||++|||+++++++.+|++|+++.+.. +++++||++
T Consensus 618 ~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~ 697 (880)
T 4arc_A 618 KGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLV 697 (880)
T ss_dssp TCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998899999999998764 566677666
Q ss_pred HHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHH
Q 039882 829 AWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYK-NYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVW 907 (1142)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye-~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~ 907 (1142)
+++.... .........+ ...|+|+++++++++++++++|+ +|+|++|+.. +|+|.+..+.|. +....+..+++
T Consensus 698 ~~~~~~~-~~~~~~~~~l-~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k~~---~~~~~~~~~l~ 771 (880)
T 4arc_A 698 YEHTAKG-DVAALNVDAL-TENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAKAP---TDGEQDRALMQ 771 (880)
T ss_dssp HHHHHTC-CCCCCCSTTC-CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTSC---CSSHHHHHHHH
T ss_pred HHHHhcc-cccccccccC-CHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhhh---ccchHHHHHHH
Confidence 5433210 0001111222 57899999999999999999998 8999999976 888877666542 11123556899
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCCC
Q 039882 908 RFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYG 948 (1142)
Q Consensus 908 ~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~~ 948 (1142)
.+++.+++||+|||||+|||||+.| +..+||+.++||+++
T Consensus 772 ~~l~~ll~LLaPf~PhiaEElW~~L-g~~~sv~~~~wP~~d 811 (880)
T 4arc_A 772 EALLAVVRMLNPFTPHICFTLWQEL-KGEGDIDNAPWPVAD 811 (880)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHT-TCSSCGGGSCCCCCC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHc-CCCCeEEeCCCCCCC
Confidence 9999999999999999999999997 666899999999875
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.3e-80 Score=776.73 Aligned_cols=480 Identities=20% Similarity=0.238 Sum_probs=373.3
Q ss_pred CcEEEeCCCCCCCCcCchhhhhh-hhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFS-FSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~-~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
++|+|++|||||||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++ .|++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k-------~G~~-------- 66 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-------EGRS-------- 66 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-------HTCC--------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-------cCCC--------
Confidence 47999999999999999999999 9999999999999999999999999999999999964 1432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+|++++...++++|++||++
T Consensus 67 ----------------------------------------------------------p~e~~~~~~~~~~~~~~~lgis 88 (722)
T 1rqg_A 67 ----------------------------------------------------------PREIVDEFHEQIKITFQRAKIS 88 (722)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCC
Confidence 4567777788899999999998
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
+|| .+.|++ |.|.++++|+|.+|+++|+||+|.++|+|||.|+|+|+|..++
T Consensus 89 ~D~--~~rT~d--~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~------------------------ 140 (722)
T 1rqg_A 89 FDF--FGRTEL--PIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI------------------------ 140 (722)
T ss_dssp CSE--EEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC------------------------
T ss_pred CCC--CeeCCC--HHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc------------------------
Confidence 887 467877 9999999999999999999999999999999999999985321
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
| |.|..
T Consensus 141 -----g---------tcP~c------------------------------------------------------------ 146 (722)
T 1rqg_A 141 -----G---------TCPYC------------------------------------------------------------ 146 (722)
T ss_dssp -----S---------BCSSS------------------------------------------------------------
T ss_pred -----c---------ccCcc------------------------------------------------------------
Confidence 1 11210
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
+.+| .||-. + +..|
T Consensus 147 -------------------------------------~~~~---------------~~Gd~---------c-----~~~G 160 (722)
T 1rqg_A 147 -------------------------------------GAED---------------QKGDQ---------C-----EVCG 160 (722)
T ss_dssp -------------------------------------CCSC---------------CCTTT---------C-----SSSC
T ss_pred -------------------------------------CCcc---------------CCcch---------h-----hhcc
Confidence 0000 00000 0 0000
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
. . +.. .+...|+||||
T Consensus 161 ~-------------------------------------~----l~~-----------------------~~l~~p~~~r~ 176 (722)
T 1rqg_A 161 R-------------------------------------P----LTP-----------------------EILINPRCAIC 176 (722)
T ss_dssp C-------------------------------------C----CCT-----------------------TSSBSCBCTTT
T ss_pred c-------------------------------------c----cCh-----------------------hhccCCcccCC
Confidence 0 0 000 01124899999
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhh-hcCCceeeecccCCCccCCCCCceeeccCCCc
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTL-GWLNQWACSRSFGLGTRIPWDPQFLVESLSDS 658 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i-~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~ 658 (1142)
|++++++.++|||++++ ++++++++.+++.. +|++.++++.+|| ++++|||||||++||+|||++. +...
T Consensus 177 g~~v~~~~~~qwF~~l~--~~~~~l~~~~~~~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~----~g~~-- 247 (722)
T 1rqg_A 177 GRPISFRDSAHYYIKMQ--DFAERLKRWIEKQP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDE----EDMK-- 247 (722)
T ss_dssp CCBCEEEEEEEEEECGG--GTHHHHHHHHHSSC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCC----SSST--
T ss_pred CcEeEEEEeccEEEEhH--HHHHHHHHHHHhCC-CCHHHHHHHHHHHHCCCcccceeccccCccccCccc----cCCC--
Confidence 99999999999999996 69999999999888 5999999999999 8999999999999999999521 0011
Q ss_pred ceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhh--hHHhhhhcCCc------ceE
Q 039882 659 TIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNR--MKQEFEYWYPF------DLR 730 (1142)
Q Consensus 659 ~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~--~~~ef~~~~P~------Dl~ 730 (1142)
..++|+|||+.....+. ..+..+. ..++|+.|||+ ++|
T Consensus 248 --------------------------------~~~iyvW~da~i~y~~~--~~~~~~~~g~~~~~~~~w~~pd~~~~~~h 293 (722)
T 1rqg_A 248 --------------------------------GKVLYVWFEAPIGYISI--TIEHFKRIGKPNEWKKYWLNIDGQTRVIH 293 (722)
T ss_dssp --------------------------------TCEECHHHHGGGHHHHH--HHHHHHHTTCTTTTHHHHBCSSCCEEEEE
T ss_pred --------------------------------CCEEEEEeccccchhhh--HHHHHhhcCCchHHHhccCCCCCCCeeEE
Confidence 24556666532211000 0000000 01135555552 389
Q ss_pred EeecccchhhHHHHHHHHHHHhcC-----------CCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhh
Q 039882 731 VSGKDLIQNHLTFCIYNHTAIMSQ-----------RHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFS 799 (1142)
Q Consensus 731 ~~G~D~ir~hl~~~l~~~~al~~~-----------~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~ 799 (1142)
++|+|++++| ++++++++.+. -++|++|++||||+.+|+|||||+||+|+|.++|++||+|++|||
T Consensus 294 ~~GkDii~fH---~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ 370 (722)
T 1rqg_A 294 FIGKDNIPFH---AIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYY 370 (722)
T ss_dssp EEEGGGHHHH---HTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHH
T ss_pred Eccccccccc---hhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHH
Confidence 9999999999 56666666653 267899999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCccchHHHHHH-----HHHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 039882 800 LADAGDGVDDANFVFDTANT-----GILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNY 872 (1142)
Q Consensus 800 la~~~~~~~D~~fs~~~~~~-----~~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~ 872 (1142)
|++.+++.+|++|+++.+.. ++++++|+++++..++... + .++........|+|+++++++++++++++|++|
T Consensus 371 ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~ 450 (722)
T 1rqg_A 371 LTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNY 450 (722)
T ss_dssp HHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998899999999998754 3456888877766655421 1 222111224789999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhHHHHHhcCCccc----------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 873 MFREALKTGFYDLQAARDEYRLSCGAGGL----------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 873 ~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~----------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
+|++|++. +++|.+.+|+|++..++|.. ...++.++++.+++||+|||||+||+||+.|
T Consensus 451 ~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L 519 (722)
T 1rqg_A 451 RFKDALKR-VMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLL 519 (722)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHc
Confidence 99999988 77899999999998777521 1235678999999999999999999999998
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1e-80 Score=761.68 Aligned_cols=467 Identities=19% Similarity=0.211 Sum_probs=366.6
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
.++|+||+|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||.+|++ .|++
T Consensus 8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-------~g~~-------- 72 (542)
T 3u1f_A 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-------KQVS-------- 72 (542)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-------TTSC--------
T ss_pred CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-------cCCC--------
Confidence 4789999999999999999999999999999999999999999999999999999998864 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+|++.+...++++|++||++
T Consensus 73 ----------------------------------------------------------~~e~~~~~~~~~~~~~~~lgi~ 94 (542)
T 3u1f_A 73 ----------------------------------------------------------PYDFTTAVAGEFKKCFEQMDYS 94 (542)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCc
Confidence 3456666777899999999999
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
+|| .+.|+| |.|.+.|+++|.+|+++|+||+|.++|+|||+|+|+|+|.+++.+
T Consensus 95 ~D~--~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~---------------------- 148 (542)
T 3u1f_A 95 IDY--FIRTTN--EQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDG---------------------- 148 (542)
T ss_dssp CSE--EEETTC--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEE----------------------
T ss_pred cCc--CccCCC--HHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcc----------------------
Confidence 999 456887 999999999999999999999999999999999998877532100
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
T Consensus 149 -------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 149 -------------------------------------------------------------------------------- 148 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
+ +.+|
T Consensus 149 ---------------------------------~------------------------------------------~~~g 153 (542)
T 3u1f_A 149 ---------------------------------V------------------------------------------DKDG 153 (542)
T ss_dssp ---------------------------------E------------------------------------------CTTS
T ss_pred ---------------------------------c------------------------------------------cccC
Confidence 0 0001
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+ . .++|+||
T Consensus 154 ~----------------------------------------------------------------~-------~~~~~~s 162 (542)
T 3u1f_A 154 N----------------------------------------------------------------P-------CKVSLES 162 (542)
T ss_dssp C----------------------------------------------------------------E-------EEEETTT
T ss_pred c----------------------------------------------------------------c-------ccccCCC
Confidence 0 0 1468999
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhc--CceeCchhhhhHHHhhh-cCCceeeecccC----CCccCCCCCceee
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNS--MNLYHDENRHGFEHTLG-WLNQWACSRSFG----LGTRIPWDPQFLV 652 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~--v~~~P~~~r~~~~~~i~-~l~DW~ISRqr~----WG~PIP~d~~~~i 652 (1142)
|++++++.++|||++++ .+++++++.+++ ..++|+..++.+.+|+. +++||||||||+ ||+|||.++
T Consensus 163 g~~ve~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~---- 236 (542)
T 3u1f_A 163 GHVVTWVSEENYMFRLS--AFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNP---- 236 (542)
T ss_dssp CCBEEEEEEEEEEECGG--GGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE----
T ss_pred CCcceeeccccceecch--hHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCc----
Confidence 99999999999999996 689999998864 78999999999888864 589999999998 999999642
Q ss_pred ccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEe
Q 039882 653 ESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVS 732 (1142)
Q Consensus 653 esl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~ 732 (1142)
+..+|+++.....++....... .....+.|+.. . .+....||+|+|++
T Consensus 237 ----~~~~~vw~da~~~~~~~~~~~~-----------~~~g~~~~~~d-----------~------~~~~~~~p~d~~~~ 284 (542)
T 3u1f_A 237 ----DHXVYVWLDALTNYLTGSRLRV-----------DESGKEVSLVD-----------D------FNELERFPADVHVI 284 (542)
T ss_dssp ----EEEECHHHHHHTHHHHHHTEEE-----------CTTSCEEEECS-----------S------GGGTTCCSCSEEEE
T ss_pred ----Ceeeeeeeccchhhhhhhhccc-----------cccCCcccccc-----------h------hhhhcCCcceEEEe
Confidence 3345665543322221100000 00111222210 0 01123489999999
Q ss_pred ecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccc
Q 039882 733 GKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812 (1142)
Q Consensus 733 G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~f 812 (1142)
|+||+++|..+.. +.++....++|+.|++||||..+|+|||||+||||+|.++|++||||++||||++.+++++|++|
T Consensus 285 G~D~~~fh~~~~~--a~l~~~g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~f 362 (542)
T 3u1f_A 285 GKDILKFHAIYWP--AFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDY 362 (542)
T ss_dssp EGGGHHHHHTHHH--HHHHHHTCCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEE
T ss_pred cccccccccchhH--HHHHhhcccccceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccc
Confidence 9999999943322 22333344778999999999999999999999999999999999999999999998889999999
Q ss_pred hHHHHHH-----HHHHHHHHHHHHHHHHhhhc-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 039882 813 VFDTANT-----GILRLTKEIAWMEEVLAVES-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886 (1142)
Q Consensus 813 s~~~~~~-----~~~kl~n~~~~~~~~~~~~~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~ 886 (1142)
+++.+.. ++++|+|+++++.......+ ..+........|+|+++++++++++++++|++|+|++|++. +++|.
T Consensus 363 s~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~-i~~~~ 441 (542)
T 3u1f_A 363 SDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIA-VFDVL 441 (542)
T ss_dssp CHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHH
T ss_pred cHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9998754 34578888877654332211 22222223588999999999999999999999999999987 78899
Q ss_pred hhhHHHHHhcCCccc----------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 887 AARDEYRLSCGAGGL----------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 887 ~~~~~Y~~~~~~~~~----------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
..+|+|++..++|.. ...++.++++.+++||+|||||+||+||+.|
T Consensus 442 ~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~L 497 (542)
T 3u1f_A 442 RAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDML 497 (542)
T ss_dssp HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHC
Confidence 999999988776521 1235567888999999999999999999998
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=5.4e-75 Score=707.65 Aligned_cols=452 Identities=18% Similarity=0.232 Sum_probs=367.6
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
++.|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+||+.+|++ .|.+
T Consensus 11 ~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~-------- 75 (524)
T 2x1l_A 11 SEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK-------EGIP-------- 75 (524)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-------HTSC--------
T ss_pred CCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-------cCCC--------
Confidence 6889999999999999999999999999999999999999999999999999999998864 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+|++.+...+++++++||++
T Consensus 76 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~lgi~ 97 (524)
T 2x1l_A 76 ----------------------------------------------------------AAELARRNSDVFQRLQEKLNIS 97 (524)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCc
Confidence 2234455556789999999998
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
.| +.+.|++ |.|.+.++++|.+|+++|+||++.++|+|||.|+|.+++.|++++
T Consensus 98 ~d--~~~~t~~--~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g---------------------- 151 (524)
T 2x1l_A 98 FD--RFIRTSD--ADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQ---------------------- 151 (524)
T ss_dssp CS--EEEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEC----------------------
T ss_pred CC--CCeecCC--HHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccC----------------------
Confidence 77 4567887 999999999999999999999999999999999988765432100
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
.+
T Consensus 152 ----------------------------------------------------------------------------~~-- 153 (524)
T 2x1l_A 152 ----------------------------------------------------------------------------PD-- 153 (524)
T ss_dssp ----------------------------------------------------------------------------TT--
T ss_pred ----------------------------------------------------------------------------CC--
Confidence 00
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
|
T Consensus 154 --------------------------G----------------------------------------------------- 154 (524)
T 2x1l_A 154 --------------------------G----------------------------------------------------- 154 (524)
T ss_dssp --------------------------S-----------------------------------------------------
T ss_pred --------------------------C-----------------------------------------------------
Confidence 0
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccc-c
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMS-R 578 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~-R 578 (1142)
+.|+ |
T Consensus 155 --------------------------------------------------------------------------~~c~~~ 160 (524)
T 2x1l_A 155 --------------------------------------------------------------------------TRIATE 160 (524)
T ss_dssp --------------------------------------------------------------------------CEEETT
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 0245 8
Q ss_pred CCCeEEEcccCccceecCchHHHHHHHHHHhc--CceeCchhhhhHHHhh-hcCCceeeecccC-CCccCCCCCceeecc
Q 039882 579 SGDECVVALTDQWYITYGEEEWKRLATECLNS--MNLYHDENRHGFEHTL-GWLNQWACSRSFG-LGTRIPWDPQFLVES 654 (1142)
Q Consensus 579 sg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~--v~~~P~~~r~~~~~~i-~~l~DW~ISRqr~-WG~PIP~d~~~~ies 654 (1142)
||+|++++.++|||++++ ++++++++++++ ..+.|+..++++.+|+ ++++||||||||. ||+|||++
T Consensus 161 ~g~~v~~~~~~qwF~~l~--~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~------- 231 (524)
T 2x1l_A 161 TGAPVTWTEEQTYFFRLS--AYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDH------- 231 (524)
T ss_dssp TCCBEEEEEEEEEEECGG--GSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTE-------
T ss_pred cCCcceEEecCCeEeeHH--HHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCC-------
Confidence 999999999999999996 699999999985 3478999999999998 6899999999985 99999952
Q ss_pred CCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCC-CCCCChhhHhhhHHhhhhcCCcceEEee
Q 039882 655 LSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPE-SSNIPSSILNRMKQEFEYWYPFDLRVSG 733 (1142)
Q Consensus 655 l~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~-~~~~~~~~l~~~~~ef~~~~P~Dl~~~G 733 (1142)
..+|+|+||||+..+. ..++|.+ ...+|++|||+|+|++|
T Consensus 232 -----------------------------------~~~~~yvWfds~~~~~~~~g~p~~----~~~~~~~~~p~di~~~G 272 (524)
T 2x1l_A 232 -----------------------------------PDHVMYVWVDALTNYLTGVGFPDT----ESESFRRYWPADLHMIG 272 (524)
T ss_dssp -----------------------------------EEEEECHHHHHHTHHHHTTTTTCT----TSHHHHHHCSCSEEEEE
T ss_pred -----------------------------------CCCEEEEecCCchHHHHHcCCCCC----chHHHHhhCCCeEEEEe
Confidence 0246788888765443 2466643 23468889999999999
Q ss_pred cccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccch
Q 039882 734 KDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV 813 (1142)
Q Consensus 734 ~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs 813 (1142)
+||+++|..+......++ +. ++|+++++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.+++.+|++|+
T Consensus 273 ~D~~~fh~~~~~a~l~~~-g~-~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs 350 (524)
T 2x1l_A 273 KDIIRFHTVYWPAFLMSA-GL-PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYN 350 (524)
T ss_dssp GGGHHHHHTHHHHHHHHH-TC-CCCSCEEEECCEEECSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEEC
T ss_pred echhHhHHHHHHHHHHHC-CC-CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcC
Confidence 999999855433222222 43 5669999999999999999999999999999999999999999999966889999999
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 039882 814 FDTANTGIL-----RLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886 (1142)
Q Consensus 814 ~~~~~~~~~-----kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~ 886 (1142)
++.+.+..+ +|+|+.+++...+... + ..+........|+|++++++++++.+.++|++|+|+.|+.. +++|.
T Consensus 351 ~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~-l~~l~ 429 (524)
T 2x1l_A 351 EDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEA-IWSVL 429 (524)
T ss_dssp HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Confidence 998876544 3778776655544321 1 12211122578999999999999999999999999999987 78899
Q ss_pred hhhHHHHHhcCCccc--------------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 887 AARDEYRLSCGAGGL--------------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 887 ~~~~~Y~~~~~~~~~--------------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
..+|+|++.+++|.. ...++.++++.+++||+|||||+||+||+.|
T Consensus 430 ~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L 489 (524)
T 2x1l_A 430 GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLL 489 (524)
T ss_dssp HHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 999999987765311 1235678899999999999999999999998
No 11
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=6.2e-74 Score=702.45 Aligned_cols=482 Identities=18% Similarity=0.251 Sum_probs=372.3
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++||||||+||+..|++ .|++
T Consensus 17 ~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~-------- 81 (560)
T 3h99_A 17 AKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-------LGIT-------- 81 (560)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-------HTSC--------
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHH-------hCCC--------
Confidence 6899999999999999999999999999999999999999999999999999999998864 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.++++.+...++++|++||++
T Consensus 82 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~lgi~ 103 (560)
T 3h99_A 82 ----------------------------------------------------------PEQMIGEMSQEHQTDFAGFNIS 103 (560)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCC
Confidence 2234445556789999999997
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
.| +.|.|++ +.|.+.++++|.+|+++|+||++.+.++|||.|+|+|++.+++. .+
T Consensus 104 ~d--~~~~t~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g---~c------------------ 158 (560)
T 3h99_A 104 YD--NYHSTHS--EENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKG---TC------------------ 158 (560)
T ss_dssp CS--EEEESSS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEE---EC------------------
T ss_pred CC--CceeCCC--HHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCC---CC------------------
Confidence 55 5678877 99999999999999999999999999999999999998854320 00
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
| .
T Consensus 159 -----------------p-------------~------------------------------------------------ 160 (560)
T 3h99_A 159 -----------------P-------------K------------------------------------------------ 160 (560)
T ss_dssp -----------------T-------------T------------------------------------------------
T ss_pred -----------------C-------------C------------------------------------------------
Confidence 0 0
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
.+. .| .+|-. .+..|
T Consensus 161 --------c~~----------------------------~~---------------~~gd~--------------ce~cg 175 (560)
T 3h99_A 161 --------CKS----------------------------PD---------------QYGDN--------------CEVCG 175 (560)
T ss_dssp --------TCC----------------------------SS---------------EETTB--------------CTTTC
T ss_pred --------CCC----------------------------cc---------------cccch--------------hhhcc
Confidence 000 00 00100 00001
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
. .+.+ .+...|+|+||
T Consensus 176 ~-----------------------------------------~~~~-----------------------~~l~~~~~~~~ 191 (560)
T 3h99_A 176 A-----------------------------------------TYSP-----------------------TELIEPKSVVS 191 (560)
T ss_dssp C-----------------------------------------BCCG-----------------------GGCEEEEETTT
T ss_pred c-----------------------------------------cCCh-----------------------hhhcCCccccC
Confidence 0 0000 01113789999
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchhhhhHHHhhh-cCCceeeeccc-CCCccCCCCCceeeccCCC
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLG-WLNQWACSRSF-GLGTRIPWDPQFLVESLSD 657 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r~~~~~~i~-~l~DW~ISRqr-~WG~PIP~d~~~~iesl~d 657 (1142)
|++++++.++|||++++ ++++.+++.+++ .++|+..++.+.+|++ +++|||||||+ +||+|||.++
T Consensus 192 g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~--------- 259 (560)
T 3h99_A 192 GATPVMRDSEHFFFDLP--SFSEMLQAWTRS-GALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP--------- 259 (560)
T ss_dssp CCCCEEEEEEEEEECGG--GGHHHHHHHHHT-SCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT---------
T ss_pred CCCceEEecceEEEEHH--HHHHHHHHHHHh-CCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC---------
Confidence 99999999999999996 699999999988 4578889999999997 89999999999 8899999421
Q ss_pred cceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-C-CCChhhHhhhHHhhhhcCCcc-----eE
Q 039882 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-S-NIPSSILNRMKQEFEYWYPFD-----LR 730 (1142)
Q Consensus 658 ~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~-~~~~~~l~~~~~ef~~~~P~D-----l~ 730 (1142)
..|+|||||+...+.+ . +++.+. ....+|+.|||.| ++
T Consensus 260 ---------------------------------~~viyvW~da~~~y~s~~~~~~~~~--~~~~~~~~~wp~~~~~~~~~ 304 (560)
T 3h99_A 260 ---------------------------------GKYFYVWLDAPIGLMGSFKNLCDKR--GDSVSFDEYWKKDSTAELYH 304 (560)
T ss_dssp ---------------------------------TEEECHHHHHHHHHHHHHHHHHHHH--TCSSHHHHHHBTTCCSEEEE
T ss_pred ---------------------------------CceEEeCcccchhHHHHHHHHhhcc--CChhhHHHhCcCCCCceeEE
Confidence 2477777875433211 0 111100 0014688899999 99
Q ss_pred EeecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCC-C
Q 039882 731 VSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGV-D 808 (1142)
Q Consensus 731 ~~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~-~ 808 (1142)
+.|+||+++|.. ++.+++...+ ++|+.|++||||+.+|+|||||+||||+|.++|++||+|++|||+++.++.+ +
T Consensus 305 ~~G~D~~~fh~~---~~~a~l~~~g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~ 381 (560)
T 3h99_A 305 FIGKDIVYFLSL---FWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRID 381 (560)
T ss_dssp EEEGGGHHHHHT---HHHHHHHHTTBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCC
T ss_pred EeccccchhHHH---HHHHHHHhCCCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCC
Confidence 999999999944 4444443322 6789999999999999999999999999999999999999999999987666 8
Q ss_pred CccchHHHHHH-----HHHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 039882 809 DANFVFDTANT-----GILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTG 881 (1142)
Q Consensus 809 D~~fs~~~~~~-----~~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~ 881 (1142)
|++|+++.+.. ++++++|+++++..++... + .++ ....|+|++++++++++.++++|++|+|+.|++.
T Consensus 382 d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~----~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~- 456 (560)
T 3h99_A 382 DIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLA----SELADPQLYKTFTDAAEVIGEAWESREFGKAVRE- 456 (560)
T ss_dssp CEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCC----SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHH-
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHH-
Confidence 99999997653 3446778776655544321 1 111 1357999999999999999999999999999988
Q ss_pred HHHHHhhhHHHHHhcCCcc------------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCCeEeccCCCC
Q 039882 882 FYDLQAARDEYRLSCGAGG------------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTY 947 (1142)
Q Consensus 882 ~~~l~~~~~~Y~~~~~~~~------------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~sv~~~~wP~~ 947 (1142)
+++|.+.+|+|++.+++|. ....++..+++.+++||+|||||+||+||+.| |.+ ..||..
T Consensus 457 l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L-~~~-----~~w~~~ 528 (560)
T 3h99_A 457 IMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL-NTE-----LTWDGI 528 (560)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-TSC-----CCTGGG
T ss_pred HHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHc-CCC-----CChhhh
Confidence 7789999999998877541 11245678999999999999999999999998 432 567753
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2.6e-73 Score=693.37 Aligned_cols=450 Identities=18% Similarity=0.213 Sum_probs=358.6
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|+.|+|||||.|||||++++++.|+++||+||+||+|.|++|||+||+||+..|++ .|.+
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~-------~g~~-------- 88 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK-------EGIT-------- 88 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-------HTSC--------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHH-------cCCC--------
Confidence 5789999999999999999999999999999999999999999999999999999988853 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.++++.+...++++|++||++
T Consensus 89 ----------------------------------------------------------~~~~~~~~~~~~~~~l~~lgi~ 110 (536)
T 4dlp_A 89 ----------------------------------------------------------PRDLADRNTSAFRRMAEVLNSS 110 (536)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCC
Confidence 2345556667889999999998
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
.| +.+.|++ +.|...++++|.+|+++|+||++..+++|||.|++.++++|+..
T Consensus 111 ~d--~~~~t~~--~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~----------------------- 163 (536)
T 4dlp_A 111 ND--DYIRTSE--ERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEV----------------------- 163 (536)
T ss_dssp CS--EEEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEE-----------------------
T ss_pred CC--cceeCCC--HHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhc-----------------------
Confidence 88 4456766 89999999999999999999999999999999998765532100
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
T Consensus 164 -------------------------------------------------------------------------------- 163 (536)
T 4dlp_A 164 -------------------------------------------------------------------------------- 163 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
| +
T Consensus 164 ~----------------------------------------------------------------------------~-- 165 (536)
T 4dlp_A 164 R----------------------------------------------------------------------------A-- 165 (536)
T ss_dssp C----------------------------------------------------------------------------T--
T ss_pred C----------------------------------------------------------------------------C--
Confidence 0 0
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+| ..|+||
T Consensus 166 -----------------------------------~g-------------------------------------~~c~~~ 173 (536)
T 4dlp_A 166 -----------------------------------DG-------------------------------------VRYGPQ 173 (536)
T ss_dssp -----------------------------------TS-------------------------------------CEECTT
T ss_pred -----------------------------------CC-------------------------------------CcccCC
Confidence 00 036789
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhcC--ceeCchhhhhHHHhhh-cCCceeeeccc-CCCccCCCCCceeeccC
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNSM--NLYHDENRHGFEHTLG-WLNQWACSRSF-GLGTRIPWDPQFLVESL 655 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v--~~~P~~~r~~~~~~i~-~l~DW~ISRqr-~WG~PIP~d~~~~iesl 655 (1142)
|+|++++.++|||++++ ++++.+++.+++. .+.|+..++++.+|++ +++|||||||| +||+|||.+
T Consensus 174 g~~~e~~~~~~~f~~l~--~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~-------- 243 (536)
T 4dlp_A 174 GTPVEWVEEESYFFRLS--AYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGD-------- 243 (536)
T ss_dssp SSBCEEEEEEEEEECGG--GGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTC--------
T ss_pred CCcceEEeccceEEecH--HHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCC--------
Confidence 99999999999999996 6999999999864 4679999999999996 79999999995 699999931
Q ss_pred CCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEeec
Q 039882 656 SDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVSGK 734 (1142)
Q Consensus 656 ~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~G~ 734 (1142)
..+|+||||||+..+++ .++|.+ ..+|+.|||+|++++|+
T Consensus 244 ----------------------------------~~~v~yvWfda~~~y~s~~~~~~~-----~~~~~~~~p~dv~~~G~ 284 (536)
T 4dlp_A 244 ----------------------------------EKHVMYVWVDALTNYITALGYPDT-----TDERWAYWPANAHIIGK 284 (536)
T ss_dssp ----------------------------------TTSEECHHHHHHHHHHHTTTTTCT-----TSGGGGGCSCSEEEEEG
T ss_pred ----------------------------------CCCceEEeeCCcHHHHHhcCCCCC-----chHHHhhCCcceEEeec
Confidence 13689999998776653 567653 24688999999999999
Q ss_pred ccchhhHHHHHHHHHHHhc-CCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccch
Q 039882 735 DLIQNHLTFCIYNHTAIMS-QRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV 813 (1142)
Q Consensus 735 D~ir~hl~~~l~~~~al~~-~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs 813 (1142)
||++||..+ +.+.+.. ..++|+.|++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.++.++|++|+
T Consensus 285 D~~~fh~~~---~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs 361 (536)
T 4dlp_A 285 DISRFHAVY---WPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYS 361 (536)
T ss_dssp GGHHHHHTH---HHHHHHHTTCCCCSCEEEECCEEC------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECC
T ss_pred hHHHHHHHH---HHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCC
Confidence 999999444 3333322 225679999999999999999999999999999999999999999999977899999999
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHhhh-c-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 039882 814 FDTANTG-----ILRLTKEIAWMEEVLAVE-S-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886 (1142)
Q Consensus 814 ~~~~~~~-----~~kl~n~~~~~~~~~~~~-~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~ 886 (1142)
++.+... .++++|+.+++..++... + ..+........|+|++++++++++.+.++|++|+|++|++. +++|.
T Consensus 362 ~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~-l~~l~ 440 (536)
T 4dlp_A 362 HEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGA-IFAVV 440 (536)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHH
Confidence 9987543 346888877666554321 1 12222223589999999999999999999999999999987 78899
Q ss_pred hhhHHHHHhcCCcc----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 887 AARDEYRLSCGAGG----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 887 ~~~~~Y~~~~~~~~----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
..+|+|++.+++|. ....++..+++.+++||+|||||+||+||+.|
T Consensus 441 ~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L 496 (536)
T 4dlp_A 441 AEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDIL 496 (536)
T ss_dssp HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTT
T ss_pred HHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHc
Confidence 99999999887642 12346778899999999999999999999987
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.6e-73 Score=697.30 Aligned_cols=460 Identities=19% Similarity=0.218 Sum_probs=372.7
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|+.|+|||||.|||||++++++.|+++||+||+||+|+|++|+|+||+||+.+|++ .|.+
T Consensus 25 ~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-------~g~~-------- 89 (564)
T 3kfl_A 25 QKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-------QGVS-------- 89 (564)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-------TTCC--------
T ss_pred CCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-------cCCC--------
Confidence 5789999999999999999999999999999999999999999999999999999998853 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+|++.+...+++++++||++
T Consensus 90 ----------------------------------------------------------p~~~~~~~~~~~~~~~~~lgi~ 111 (564)
T 3kfl_A 90 ----------------------------------------------------------PMDFTTSVSSEFKQCFQEMNYD 111 (564)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHcCCC
Confidence 3345666667889999999999
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
.|+ .+.|++ |+|...++++|.+|+++|+||++...++|||.|++.+++.|+..+
T Consensus 112 ~D~--~~~t~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~---------------------- 165 (564)
T 3kfl_A 112 MNY--FIRTTN--PTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADG---------------------- 165 (564)
T ss_dssp CSE--EEETTS--HHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEE----------------------
T ss_pred CCc--cccCCC--HHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccC----------------------
Confidence 995 456766 999999999999999999999999999999999988776432100
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
T Consensus 166 -------------------------------------------------------------------------------- 165 (564)
T 3kfl_A 166 -------------------------------------------------------------------------------- 165 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
||. . |
T Consensus 166 ---------------------------------~~~---------------------~---------------------g 170 (564)
T 3kfl_A 166 ---------------------------------VDR---------------------D---------------------G 170 (564)
T ss_dssp ---------------------------------ECT---------------------T---------------------S
T ss_pred ---------------------------------cCC---------------------C---------------------C
Confidence 000 0 0
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+ .++ ++++|
T Consensus 171 ~--------------------------------------~c~---------------------------------~~~~~ 179 (564)
T 3kfl_A 171 K--------------------------------------PCK---------------------------------VSLES 179 (564)
T ss_dssp C--------------------------------------EEE---------------------------------EETTT
T ss_pred C--------------------------------------Eec---------------------------------cccCC
Confidence 0 000 12468
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhc--CceeCchhhhhHHHhhh-cCCceeeec----ccCCCccCCCCCceee
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNS--MNLYHDENRHGFEHTLG-WLNQWACSR----SFGLGTRIPWDPQFLV 652 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~--v~~~P~~~r~~~~~~i~-~l~DW~ISR----qr~WG~PIP~d~~~~i 652 (1142)
|+|++++.++|||++++ .+++.+++.+++ ..|+|++.++++.+|++ +++|||||| |++||+|||.+
T Consensus 180 g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~----- 252 (564)
T 3kfl_A 180 GHVVTWVEEENYMFRLS--AFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGD----- 252 (564)
T ss_dssp SCBCEEEEEEEEEECGG--GGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE-----
T ss_pred CCccEEEecceeEEEHH--HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCC-----
Confidence 89999999999999996 699999999975 45789999999999997 899999999 89999999931
Q ss_pred ccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCC-ChhhHh-hhHHhh--hhcCCc
Q 039882 653 ESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNI-PSSILN-RMKQEF--EYWYPF 727 (1142)
Q Consensus 653 esl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~-~~~~l~-~~~~ef--~~~~P~ 727 (1142)
..+|+|||||++..+++ .++ +.+.-+ .+..+| +.|||+
T Consensus 253 -------------------------------------~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~ 295 (564)
T 3kfl_A 253 -------------------------------------ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPA 295 (564)
T ss_dssp -------------------------------------EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSC
T ss_pred -------------------------------------CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCcc
Confidence 13688999998766543 222 221100 000126 789999
Q ss_pred ceEEeecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCC
Q 039882 728 DLRVSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDG 806 (1142)
Q Consensus 728 Dl~~~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~ 806 (1142)
|++++|+||++|| ++++++++...+ ++|+.|++||||+.+|+|||||+||||+|.+++++||+|++|||+++..+.
T Consensus 296 dv~~~GkDii~FH---~~~wpa~L~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~ 372 (564)
T 3kfl_A 296 DVHVVGKDILKFH---AIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372 (564)
T ss_dssp SEEEEEGGGHHHH---HTHHHHHHHHTTCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCS
T ss_pred ceEEEeecccchH---HHHHHHHHHhCCCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCc
Confidence 9999999999999 555554443332 567999999999999999999999999999999999999999999997789
Q ss_pred CCCccchHHHHHH-----HHHHHHHHHHHHHHHHhhhc-cCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 039882 807 VDDANFVFDTANT-----GILRLTKEIAWMEEVLAVES-SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKT 880 (1142)
Q Consensus 807 ~~D~~fs~~~~~~-----~~~kl~n~~~~~~~~~~~~~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~ 880 (1142)
++|++|+++.+.. ++++++|+++++..++...+ ..+........|+|++++++++++.+.++|++|+|++|++.
T Consensus 373 ~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~ 452 (564)
T 3kfl_A 373 QDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIA 452 (564)
T ss_dssp SCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999998754 34678999887766543221 12222222578999999999999999999999999999988
Q ss_pred HHHHHHhhhHHHHHhcCCcc----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 881 GFYDLQAARDEYRLSCGAGG----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 881 ~~~~l~~~~~~Y~~~~~~~~----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
+++|...+|+|++.+++|. ....++.++++.+++||+|||||+||+||+.|
T Consensus 453 -i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~L 513 (564)
T 3kfl_A 453 -IFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDAL 513 (564)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHc
Confidence 7889999999998887642 12346788999999999999999999999988
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=9.5e-73 Score=684.62 Aligned_cols=443 Identities=20% Similarity=0.228 Sum_probs=360.6
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|+.|+|||||.|||||+++++++|+++||+||+||+|+|++||||||+||+.+|++ .|.+
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~-------- 66 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA-------AGED-------- 66 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH-------HTSC--------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH-------cCCC--------
Confidence 3689999999999999999999999999999999999999999999999999999998864 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.+|++.+...++++|++||++
T Consensus 67 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~lgi~ 88 (500)
T 2d5b_A 67 ----------------------------------------------------------PKAFVDRVSGRFKRAWDLLGIA 88 (500)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCc
Confidence 2345555667789999999998
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
+|| .+.|++ |.|.+.++++|.+|+++|+||++.++++|||.|+|.+++++
T Consensus 89 ~d~--~~~t~~--~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~-------------------------- 138 (500)
T 2d5b_A 89 YDD--FIRTTE--ERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE-------------------------- 138 (500)
T ss_dssp CSE--EEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTT--------------------------
T ss_pred CCC--CcccCC--HHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchh--------------------------
Confidence 774 577887 89999999999999999999999999999999987543210
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
|+
T Consensus 139 ------------------------------------------------------------------------------l~ 140 (500)
T 2d5b_A 139 ------------------------------------------------------------------------------LV 140 (500)
T ss_dssp ------------------------------------------------------------------------------SB
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+| .|+||
T Consensus 141 -----------------------------------~g--------------------------------------~c~~~ 147 (500)
T 2d5b_A 141 -----------------------------------EG--------------------------------------LCPIH 147 (500)
T ss_dssp -----------------------------------TT--------------------------------------BCTTT
T ss_pred -----------------------------------CC--------------------------------------cCCCC
Confidence 00 27789
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhc-C-ceeCchhhhhHHHhh-hcCCceeeec--cc-CCCccCCCCCceeec
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNS-M-NLYHDENRHGFEHTL-GWLNQWACSR--SF-GLGTRIPWDPQFLVE 653 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~-v-~~~P~~~r~~~~~~i-~~l~DW~ISR--qr-~WG~PIP~d~~~~ie 653 (1142)
|.|++++.++|||++++ ++++.+++.+++ . .+.|+..++++.+|+ ++++|||||| || .||+|||++
T Consensus 148 ~~~v~~~~~~~wf~~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~------ 219 (500)
T 2d5b_A 148 GRPVERRKEGNYFFRME--KYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD------ 219 (500)
T ss_dssp CSBCEEEEEEEEEECGG--GGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE------
T ss_pred CCeeeEEecCceEEEcH--HHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC------
Confidence 99999999999999996 699999999986 3 356999999999998 5789999999 77 699999952
Q ss_pred cCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCC-CCCChhhHhhhHHhhhhcCCcceEEe
Q 039882 654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES-SNIPSSILNRMKQEFEYWYPFDLRVS 732 (1142)
Q Consensus 654 sl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~-~~~~~~~l~~~~~ef~~~~P~Dl~~~ 732 (1142)
..+|+|+||||+..+.+ .+|+.+ .+|+.+||+|+|++
T Consensus 220 ------------------------------------~~~v~~vWfds~~~y~~~~g~~~~------~~~~~~~p~di~~~ 257 (500)
T 2d5b_A 220 ------------------------------------ENHVTFVWFDALLNYVSALDYPEG------EAYRTFWPHAWHLI 257 (500)
T ss_dssp ------------------------------------EEEEECHHHHHHTHHHHTTTTTTC------HHHHHHGGGEEEEE
T ss_pred ------------------------------------CCCeeEEccccchhhHHHcCCCCC------chHHHcCCCeEEEE
Confidence 12578889998765543 456543 12777899999999
Q ss_pred ecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEee-cCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCcc
Q 039882 733 GKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIML-NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDAN 811 (1142)
Q Consensus 733 G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~ 811 (1142)
|+||+++|..+......++ +. ++|+.+++||||+. +|+|||||+||+|+|.++|++||+|++|||+++.+++.+|++
T Consensus 258 G~D~~~fh~~~~~a~~~~~-g~-~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~ 335 (500)
T 2d5b_A 258 GKDILKPHAVFWPTMLKAA-GI-PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTP 335 (500)
T ss_dssp EGGGHHHHHTHHHHHHHHH-TC-CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEE
T ss_pred eechhhhHHHHHHHHHHHc-CC-CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCC
Confidence 9999999976544333333 44 55699999999997 999999999999999999999999999999999768999999
Q ss_pred chHHHHHHHH-----HHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 039882 812 FVFDTANTGI-----LRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886 (1142)
Q Consensus 812 fs~~~~~~~~-----~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~ 886 (1142)
|+++.+.+.. ++++|+..++...+.... . +......++|++++++++++.+.++|++|+|+.|+.. +++|.
T Consensus 336 fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~--~-~~~~~~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~-l~~l~ 411 (500)
T 2d5b_A 336 VSEEALRTRYEADLADDLGNLVQRTRAMLFRFA--E-GRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEE-AMAYV 411 (500)
T ss_dssp CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHS--T-TBCCCCCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CCCCchhHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHH
Confidence 9999876543 345666555444332211 0 1110112489999999999999999999999999987 78899
Q ss_pred hhhHHHHHhcCCccc----------hHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 039882 887 AARDEYRLSCGAGGL----------NRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932 (1142)
Q Consensus 887 ~~~~~Y~~~~~~~~~----------~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L 932 (1142)
..+|+|++.+++|.. ...++.++++.++++|+|||||+||+||+.|
T Consensus 412 ~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l 467 (500)
T 2d5b_A 412 KALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467 (500)
T ss_dssp HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHc
Confidence 999999988776521 2246777888899999999999999999998
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.1e-71 Score=674.36 Aligned_cols=442 Identities=18% Similarity=0.219 Sum_probs=334.8
Q ss_pred CCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCccccc
Q 039882 100 GEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAE 179 (1142)
Q Consensus 100 ~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~ 179 (1142)
+++|+|+.|||||||.|||||+++++++|+++||+||+||+|+|++||||||+|||.+|++ .|.+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~-------- 68 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-------LGIS-------- 68 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-------SSSC--------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-------cCCC--------
Confidence 4789999999999999999999999999999999999999999999999999999998864 2432
Q ss_pred ccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccc
Q 039882 180 KEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLG 259 (1142)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~ 259 (1142)
|.++++.+...++++|++||++
T Consensus 69 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~lgi~ 90 (497)
T 2csx_A 69 ----------------------------------------------------------PKELVDRNAERFKKLWEFLKIE 90 (497)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHhCCc
Confidence 2234455556789999999996
Q ss_pred cccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCC
Q 039882 260 CDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAK 339 (1142)
Q Consensus 260 ~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~ 339 (1142)
.| +.+.|++ |.|.+.++++|.+|+++|+||++.++++|||.|+|+++++|+
T Consensus 91 ~d--~~~~t~~--~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~------------------------- 141 (497)
T 2csx_A 91 YT--KFIRTTD--PYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAEL------------------------- 141 (497)
T ss_dssp CS--EEEETTS--HHHHHHHHHHHHHHHHTTCEEEEEC------------------------------------------
T ss_pred CC--CCccCCC--HHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHh-------------------------
Confidence 66 4678887 999999999999999999999999999999998876543210
Q ss_pred cccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceec
Q 039882 340 FGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419 (1142)
Q Consensus 340 ~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~ 419 (1142)
.
T Consensus 142 -------------------------------------------------------------------------------~ 142 (497)
T 2csx_A 142 -------------------------------------------------------------------------------A 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCC
Q 039882 420 GLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFG 499 (1142)
Q Consensus 420 G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G 499 (1142)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccC
Q 039882 500 DKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS 579 (1142)
Q Consensus 500 ~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rs 579 (1142)
+ . +.|+||
T Consensus 143 -----------------------------------~----~---------------------------------~~c~~~ 150 (497)
T 2csx_A 143 -----------------------------------E----D---------------------------------HTCPIH 150 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------c----C---------------------------------CCCCCC
Confidence 0 0 125678
Q ss_pred CCeEEEcccCccceecCchHHHHHHHHHHhcC--ceeCchhhhhHHHhhh-cCCceeeec--cc-CCCccCCCCCceeec
Q 039882 580 GDECVVALTDQWYITYGEEEWKRLATECLNSM--NLYHDENRHGFEHTLG-WLNQWACSR--SF-GLGTRIPWDPQFLVE 653 (1142)
Q Consensus 580 g~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v--~~~P~~~r~~~~~~i~-~l~DW~ISR--qr-~WG~PIP~d~~~~ie 653 (1142)
|.+++.+.++|||++++ ++++++++.+++. .+.|+..++++.+|++ +++|||||| |+ .||+|||+++
T Consensus 151 ~~~~~~~~~~~wf~~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~----- 223 (497)
T 2csx_A 151 QKKCEYIKEPSYFFRLS--KYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDP----- 223 (497)
T ss_dssp -------CCEEEEECTT--SSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEE-----
T ss_pred CCCCeEEecCceEEEcH--HHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCC-----
Confidence 88888889999999997 5999999999863 4578888999999985 689999999 76 6999999420
Q ss_pred cCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEee
Q 039882 654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSG 733 (1142)
Q Consensus 654 sl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G 733 (1142)
.+++|+||||+..+.+ .++.. .+ .+||+|+|++|
T Consensus 224 -------------------------------------~~~i~vW~ds~~~~~s-~~~~~------~~--~~~p~di~~~G 257 (497)
T 2csx_A 224 -------------------------------------EHTIYVWFDALFNYIS-ALEDK------VE--IYWPADLHLVG 257 (497)
T ss_dssp -------------------------------------EEEECSHHHHHTHHHH-TTTTT------HH--HHCSCSCEEEE
T ss_pred -------------------------------------CceEEEecccchhhcc-cCCCc------ch--hhCCceEEEee
Confidence 2466788987644321 11110 11 45699999999
Q ss_pred cccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccch
Q 039882 734 KDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV 813 (1142)
Q Consensus 734 ~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs 813 (1142)
+||+++|..+......++ +. ++|+.+++||||+.+|+|||||+||+|+|.++|++||+|++|||+++.+++.+|++|+
T Consensus 258 ~D~~~~H~~~~~a~l~~~-g~-~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs 335 (497)
T 2csx_A 258 KDILRFHTVYWPAFLMSL-GY-ELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFS 335 (497)
T ss_dssp GGGHHHHHTHHHHHHHHH-TC-CCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECC
T ss_pred cchhHhHHHHHHHHHHHc-CC-CCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCC
Confidence 999999965543333333 43 4569999999999999999999999999999999999999999999977899999999
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Q 039882 814 FDTANTGI-----LRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAA 888 (1142)
Q Consensus 814 ~~~~~~~~-----~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~ 888 (1142)
++.+.... ++++|+..++...+..... +......|+|++++++++++.+.++|++|+|+.|+.. +++|...
T Consensus 336 ~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~---~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~-l~~l~~~ 411 (497)
T 2csx_A 336 KKAILNRINGELANEIGNLYSRVVNMAHKFLG---GEVSGARDEEYAKIAQESIKNYENYMEKVNFYKAIEE-ILKFTSY 411 (497)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST---TCBCCCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHH
Confidence 99886544 3467776666555433211 1111357899999999999999999999999999987 7889999
Q ss_pred hHHHHHhcCCcc-----------chHHHHHHHHHHHHHHhhchhhHHHHHHHHHhh
Q 039882 889 RDEYRLSCGAGG-----------LNRDLVWRFMDVQTRLITPICPHYAEYVWRVIL 933 (1142)
Q Consensus 889 ~~~Y~~~~~~~~-----------~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~ 933 (1142)
+|+|++.+++|. ....++.++++.+++||+|||||+|||||+.|.
T Consensus 412 ~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~ 467 (497)
T 2csx_A 412 LNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLG 467 (497)
T ss_dssp HHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred HHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcC
Confidence 999998776541 122457788999999999999999999999983
No 16
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=100.00 E-value=3.7e-57 Score=490.89 Aligned_cols=233 Identities=46% Similarity=0.794 Sum_probs=212.5
Q ss_pred CCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCC--CCCeeeEeEecceecC
Q 039882 343 LEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIP--KKPTCLVELTGYDLIG 420 (1142)
Q Consensus 343 l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~--~~~~~~~~~~G~~L~G 420 (1142)
+.|++++++||||||||||||+||||||+++|+++++.+++.||++++++++|++|...... +.++++.+++|++|+|
T Consensus 75 l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G 154 (311)
T 3pz6_A 75 VDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLL 154 (311)
T ss_dssp CCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTT
T ss_pred cCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcC
Confidence 45678999999999999999999999999999999996678999999999999988643221 4689999999999999
Q ss_pred CeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhh-hccChhHHHhhCCCccccC-CcccceeecCCCC
Q 039882 421 LPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHD-LKAKPAFRAKFGVKDEWVL-PFEVIPIINIPEF 498 (1142)
Q Consensus 421 ~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~-l~~~~~~~~k~gl~~~~~~-~~~~~~vi~~~~~ 498 (1142)
+.|.|||+..+.+||++++||++++|||+||+|||||++||.+|++ |++|++|++||||+++|+. +++++|||+++++
T Consensus 155 ~~~~hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~ 234 (311)
T 3pz6_A 155 ATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDI 234 (311)
T ss_dssp CEEECTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTT
T ss_pred CEEECCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCC
Confidence 9999999864479999999999999999999999999999999999 9999999999999999998 8999999999999
Q ss_pred CCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccc
Q 039882 499 GDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRV 575 (1142)
Q Consensus 499 G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v 575 (1142)
|+++|+++|+++||+||+|..+|++|++.+|++||++|+|..|+|+|++|.+|+++|+++|+++|.++.|+||+..|
T Consensus 235 G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyEpe~~v 311 (311)
T 3pz6_A 235 GTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVKDCKQSCRDLLVQNNQCIVYSEPESEV 311 (311)
T ss_dssp BSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTCEEEEECC----
T ss_pred CCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEeeeccCCeEHHHHHHHHHHHHHHCCCceEEccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654
No 17
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=434.56 Aligned_cols=252 Identities=54% Similarity=0.933 Sum_probs=231.8
Q ss_pred ccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhh
Q 039882 319 GVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQ 398 (1142)
Q Consensus 319 ~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q 398 (1142)
+++||+|++|+|++.++.++.+..+.+.+++|+||||||||||||+||||||+++|+.+++.+++.||++++++.++.||
T Consensus 1 ~~~~~e~~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~ 80 (252)
T 2wfd_A 1 AMGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQ 80 (252)
T ss_dssp CCCCCEEEEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTT
T ss_pred CCCceEEEEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHH
Confidence 47899999999999875555555566778999999999999999999999999999999975568999999999998898
Q ss_pred ccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhC
Q 039882 399 NFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFG 478 (1142)
Q Consensus 399 ~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~g 478 (1142)
.+....++++++.+++|.+|+|++|+||+++.+.+||++++||++++|||+||+|||||++||++|++|+++++|+++||
T Consensus 81 ~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kyg 160 (252)
T 2wfd_A 81 GFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYG 160 (252)
T ss_dssp TSSSSTTCCCEEEECCHHHHTTCEEECSSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTT
T ss_pred HhhccCcccEEEEEEEcccccCCEEEcCCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcC
Confidence 76554567889999999999999999999854579999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHH
Q 039882 479 VKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSK 558 (1142)
Q Consensus 479 l~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~ 558 (1142)
|+.+|+.++++++||+.+++|++++..+|++++|.||+|..+|++|++.+|..||++|+|.+|+|+|+++.+|++.|+++
T Consensus 161 L~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~~~~~~Gl~v~eA~~~Ii~~ 240 (252)
T 2wfd_A 161 IRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKK 240 (252)
T ss_dssp CCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSTTSTTCBHHHHHHHHHHH
T ss_pred CCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEeeeccCCeEHHHHHHHHHHH
Confidence 99888888889999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHcCCeeeeec
Q 039882 559 LIETGEAIMYSE 570 (1142)
Q Consensus 559 L~~~g~l~~~~e 570 (1142)
|+++|.+..++|
T Consensus 241 L~~~g~~~~~~e 252 (252)
T 2wfd_A 241 MIDAGDALIYME 252 (252)
T ss_dssp HHHTTSEEEEEC
T ss_pred HHHCCCCccccC
Confidence 999999998775
No 18
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=100.00 E-value=5.1e-46 Score=407.69 Aligned_cols=244 Identities=43% Similarity=0.767 Sum_probs=217.3
Q ss_pred cceeEeeeccCCCCCCccc--------CCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhh
Q 039882 324 DYTLIKMEVLQPFPAKFGP--------LEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNL 395 (1142)
Q Consensus 324 ~y~~ikf~~~~~~~~~~~~--------l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l 395 (1142)
+||+||+++.+ +|+++.. +.+.+.+|+||||||||||||+||||||+++|+.+++.++++||+++++...+
T Consensus 2 ~y~~ik~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~ 80 (261)
T 2wfg_A 2 GYVGIKIRLTD-VAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNM 80 (261)
T ss_dssp CEEEEEEEEEE-CCHHHHHHHHHTTCCTTTSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHH
T ss_pred ceeEEEEEEec-CcHHHHHHhcccccccCCCCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHH
Confidence 69999999987 6665433 34457899999999999999999999999999999987677888888888888
Q ss_pred hhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHH
Q 039882 396 AYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRA 475 (1142)
Q Consensus 396 ~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~ 475 (1142)
.|+++....++++++.+++|.+|+|++|.|||+.++.+||++++||++++|||+||+|||||++||+++++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~-- 158 (261)
T 2wfg_A 81 SFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEY-- 158 (261)
T ss_dssp TTTTCSSSTTCCCCSEEEEHHHHTTCEEECTTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTT--
T ss_pred HHHhhhhcccccEEEEEEecccccCCEEECCCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhh--
Confidence 888765544567888999999999999999998556799999999999999999999999999999999888766655
Q ss_pred hhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHH
Q 039882 476 KFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLI 555 (1142)
Q Consensus 476 k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I 555 (1142)
|||..+|+ +++++++|+.+++|++++.++|++++|+||+|..+|++|++.+|++||+.|+|.+|+|+|+++.+|++.|
T Consensus 159 -ygi~~~~~-~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~I 236 (261)
T 2wfg_A 159 -YGIEKDWV-QTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKV 236 (261)
T ss_dssp -TTCCGGGC-CCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHH
T ss_pred -cCCccccc-cCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHH
Confidence 99888887 7889999998889999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHcCCeeeeeccC
Q 039882 556 RSKLIETGEAIMYSEPE 572 (1142)
Q Consensus 556 ~~~L~~~g~l~~~~e~~ 572 (1142)
+++|+++|.+....++.
T Consensus 237 i~~L~~~G~~~~~~~~~ 253 (261)
T 2wfg_A 237 KQDLIDEGLAFVYNEPE 253 (261)
T ss_dssp HHHHHHTTSEEEECC--
T ss_pred HHHHHHCCCeeeeeeee
Confidence 99999999999776543
No 19
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.3e-35 Score=344.78 Aligned_cols=145 Identities=20% Similarity=0.237 Sum_probs=106.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEe-eEEeecCccccccCCCcCChHHHHHH-cChhhhhhhhhc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCN-GHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLAD 802 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~h-G~vl~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~ 802 (1142)
-|+|++++|+||+++|+.+.+..+.++++..++ .++++| |||+.+|+|||||+||+|+|.+++++ ||+|++|||+++
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~-~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTGERRF-ARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCS-EEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcCCCCc-CeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 389999999999999999999999999887666 667777 89999999999999999999999999 999999999999
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHH
Q 039882 803 AGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTG 881 (1142)
Q Consensus 803 ~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~ 881 (1142)
+++.+|++|+++.+....+.+.++.+.+ ... . +. .++.+++++.++| ++|+|+.|+..
T Consensus 322 -~~~~~d~~fs~~~l~~~~~~l~~l~n~~----~~~---~-~~-----------~~~~~~~~v~~a~~d~~~~~~Al~~- 380 (414)
T 3c8z_A 322 -GHYREDRFWSNEVLDEANARLARWRSAT----ALP---E-AP-----------DATDVIARVRQYLADDLDTPKALAA- 380 (414)
T ss_dssp -SCTTSCBCCCHHHHHHHHHHHHHHHHHH----TSS---C-BS-----------CCHHHHHHHHHHHHBTCCHHHHHHH-
T ss_pred -cCcCCCCCcCHHHHHHHHHHHHHHHHHH----Hhc---c-ch-----------hHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 5899999999998876544433333322 111 1 11 1357788999999 89999999977
Q ss_pred HHHHHhhhHH
Q 039882 882 FYDLQAARDE 891 (1142)
Q Consensus 882 ~~~l~~~~~~ 891 (1142)
+++|.+..|.
T Consensus 381 i~~~~~~~n~ 390 (414)
T 3c8z_A 381 LDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7788888776
No 20
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=2.8e-34 Score=338.23 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=106.2
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
|.|+|++|+|++++|+.+.++++.++++. ||++.++.+|||+.+|+|||||+||+|+|.+++++ ||+|++|||++++
T Consensus 253 ~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~- 330 (501)
T 3sp1_A 253 ALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS- 330 (501)
T ss_dssp CCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS-
T ss_pred CceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc-
Confidence 67999999999999999999999999985 77455555599999999999999999999999999 9999999999988
Q ss_pred CCCCCccchHHHHHHHHHH-------HHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhh-hccHHH
Q 039882 805 DGVDDANFVFDTANTGILR-------LTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYK-NYMFRE 876 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~~~k-------l~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye-~~~f~~ 876 (1142)
.+.+|++|+++.+....+. |+|+++.+............... + ...+..+.+.+.++|+ +|+...
T Consensus 331 ~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~f~~am~dDlnt~~ 403 (501)
T 3sp1_A 331 HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNF----G---FSVEKEYYDSFVEKISFDLNVAQ 403 (501)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTTSC----S---SHHHHHHHHHHHHHHHBTSCHHH
T ss_pred cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccccch----h---hhhHHHHHHHHHHHHHhccCcHH
Confidence 7999999999988765555 44433321111110000000000 0 1234567778899995 899999
Q ss_pred HHHHHHHHHHhhhH
Q 039882 877 ALKTGFYDLQAARD 890 (1142)
Q Consensus 877 a~~~~~~~l~~~~~ 890 (1142)
|+.. ++++....|
T Consensus 404 al~~-l~~~~~~~~ 416 (501)
T 3sp1_A 404 GLAL-LWEIIKSDN 416 (501)
T ss_dssp HHHH-HHHHHHCSS
T ss_pred HHHH-HHHHHHHhc
Confidence 9976 777765543
No 21
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3.3e-33 Score=328.05 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=119.0
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccCC
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~ 805 (1142)
+.|++.+|.|++++|+...+..+.++++. ||++.++.+|||..+|+|||||+||+|+|.+++++||+|++|||++++ .
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~-~ 300 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSG-H 300 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHS-C
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccC-C
Confidence 68999999999999999999999999987 886777777888899999999999999999999999999999999987 6
Q ss_pred CCCCccchHHHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHhh-hccHHHHHHHH
Q 039882 806 GVDDANFVFDTANTGI---LRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYK-NYMFREALKTG 881 (1142)
Q Consensus 806 ~~~D~~fs~~~~~~~~---~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ye-~~~f~~a~~~~ 881 (1142)
+.+|++|+++.+.... .+++|.++++. ... . ..+..+...+.++|+ +|+...|+..
T Consensus 301 yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~----------~~~---~------~~~~~~~~~~~~a~~dD~nt~~a~~~- 360 (462)
T 3tqo_A 301 YRNPLSYSKENLENGRLALERFYLALRGLP----------VVN---H------EKTSSYTDRFYEAMDDDFNTPIAFAL- 360 (462)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHTTCC----------C---------------CHHHHHHHHHHTBTCCHHHHHHH-
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHHHhh----------hcc---c------hhHHHHHHHHHHHHHhccChHHHHHH-
Confidence 8999999999887644 44544443210 000 0 123466778899996 8999999976
Q ss_pred HHHHHhhhHHHHH
Q 039882 882 FYDLQAARDEYRL 894 (1142)
Q Consensus 882 ~~~l~~~~~~Y~~ 894 (1142)
++++....|.+..
T Consensus 361 l~~~~~~~n~~~~ 373 (462)
T 3tqo_A 361 LFEMVREINRFRD 373 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 7888888887654
No 22
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=99.98 E-value=2.5e-32 Score=285.58 Aligned_cols=174 Identities=23% Similarity=0.306 Sum_probs=141.0
Q ss_pred eeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCC
Q 039882 326 TLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPK 405 (1142)
Q Consensus 326 ~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~ 405 (1142)
++|+|++.+... . ...+.+++||||||||||||+||||||+++|+.+++. ++.|+++++.++++.. .
T Consensus 6 i~V~F~~~~~~~---~--~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~-~~~~i~a~~~~~~~~~-------~ 72 (186)
T 1wny_A 6 VYVRFPLKEPKK---L--GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG-DEALILEEGLGRKLLG-------E 72 (186)
T ss_dssp EEEEEEBSCGGG---G--TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEET-TEEEEEEHHHHHHHHC-------T
T ss_pred EEEEEEeCCCcc---c--cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeC-CcchHHHHHHHHHHhh-------c
Confidence 457787754100 0 0125789999999999999999999999999999984 5789999988876542 1
Q ss_pred CCeeeEeEecceecCCeEecCCCC--CceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccc
Q 039882 406 KPTCLVELTGYDLIGLPLKSPLSF--NEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEW 483 (1142)
Q Consensus 406 ~~~~~~~~~G~~L~G~~~~~Pl~~--~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~ 483 (1142)
+++++.+++|.+|+|+.|.||++. ++.+||++++||++++|||+||+|||||++||+++ ++|||+
T Consensus 73 ~~~~~~~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~----------~~~~L~--- 139 (186)
T 1wny_A 73 GTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETA----------RVYGLP--- 139 (186)
T ss_dssp TSCEEEEEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHH----------HHHTCC---
T ss_pred CcEEEEEEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHH----------HHcCCc---
Confidence 567889999999999999999962 56899999999999999999999999999999876 689974
Q ss_pred cCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccCCCCcchHhhhHHHHHHHHHcC
Q 039882 484 VLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETG 563 (1142)
Q Consensus 484 ~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g 563 (1142)
++++|+ +.|.++ + .| |+|+.+.+|++.|++.|+++|
T Consensus 140 -----i~~~id--~~G~~~--------------------------------~----~~-~~Gl~v~~A~~~Ii~~L~~~g 175 (186)
T 1wny_A 140 -----LLKTVD--EEGKLL--------------------------------V----EP-FKGLYFREANRAILRDLRGRG 175 (186)
T ss_dssp -----CCCCBC--TTSBBC--------------------------------S----TT-CTTCBHHHHHHHHHHHHHHTT
T ss_pred -----eEeeeC--CCccCc--------------------------------c----CC-CCCcCHHHHHHHHHHHHHHCC
Confidence 345553 334421 1 26 999999999999999999999
Q ss_pred Ceeeee
Q 039882 564 EAIMYS 569 (1142)
Q Consensus 564 ~l~~~~ 569 (1142)
.++...
T Consensus 176 ~l~~~~ 181 (186)
T 1wny_A 176 LLFKEE 181 (186)
T ss_dssp CEEEEE
T ss_pred Ceecce
Confidence 998543
No 23
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.98 E-value=2.1e-31 Score=316.46 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=124.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcChhhhhhhhhccC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAG 804 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~ 804 (1142)
.|.|+|++|+||+++|..+.+..+.++++. +||+.+++||||+.+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 219 ~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~- 296 (461)
T 1li5_A 219 NHFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG- 296 (461)
T ss_dssp SSEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS-
T ss_pred CCceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcC-
Confidence 378999999999999999998888888776 787888888999999999999999999999999999999999999985
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHH
Q 039882 805 DGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KNYMFREALKTGFY 883 (1142)
Q Consensus 805 ~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~y-e~~~f~~a~~~~~~ 883 (1142)
++.+|++|+++.+....+.+.++.+++. ..+. ... . | +++.+.+.+.++| ++|+++.|+.. ++
T Consensus 297 ~~~~~~~fs~~~l~~~~~~l~rl~n~~~----~~~~----~~~-~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~ 360 (461)
T 1li5_A 297 HYRSQLNYSEENLKQARAALERLYTALR----GTDK----TVA-P-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LF 360 (461)
T ss_dssp CTTSCEEECHHHHHHHHHHHHHHHHHHT----TCCT----TSC-C-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHH----Hhhc----CCC-H-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HH
Confidence 7999999999987665443333322221 1110 011 1 3 4677888999999 99999999987 78
Q ss_pred HHHhhhHHHHHh
Q 039882 884 DLQAARDEYRLS 895 (1142)
Q Consensus 884 ~l~~~~~~Y~~~ 895 (1142)
++....|+|+..
T Consensus 361 ~l~~~~N~~~~~ 372 (461)
T 1li5_A 361 DMAREVNRLKAE 372 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 899999998754
No 24
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=2.1e-30 Score=276.50 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=126.5
Q ss_pred ceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEE-----EEehHHHHhhhhhccccCCCCCeeeEeEecceecCC
Q 039882 347 KVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVL-----IVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGL 421 (1142)
Q Consensus 347 ~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~-----i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~ 421 (1142)
..+|+||||||||||||++|||||+++|+.+...++..+ ++++..++.+.-.. . .+..++.+++|. |.|+
T Consensus 37 ~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~G~-l~G~ 111 (219)
T 3o0a_A 37 RIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMS-T---RERTMEEDKEGV-FLGV 111 (219)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCC-H---HHHHSCSSCCEE-EEEE
T ss_pred CCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhc-c---ccceeEEEeeeE-EcCC
Confidence 478999999999999999999999999998876432222 44554444322100 0 011223678998 9999
Q ss_pred eEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCc
Q 039882 422 PLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDK 501 (1142)
Q Consensus 422 ~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~ 501 (1142)
+|.|||+ ++.+||+.++||++++|||+||+|||||++||+++ ++|||+ ++++|+.++ +.
T Consensus 112 ~~~~Pl~-~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~----------~k~~Lp--------i~~vi~~~~--~~ 170 (219)
T 3o0a_A 112 YATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFA----------KKYDLP--------IKVVVKPEG--AW 170 (219)
T ss_dssp EEECTTT-CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHH----------HHHTCC--------CCCCEECSS--CC
T ss_pred EEECCCC-CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHH----------HHcCCC--------ceeeeCCcc--cc
Confidence 9999998 47899999999999999999999999999999865 789974 345555321 10
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHcCCeee
Q 039882 502 SAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIETGEAIM 567 (1142)
Q Consensus 502 ~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~g~l~~ 567 (1142)
.. .+..|.+ +|+|. .|+|.|+.+++|+++|++.|+++|++..
T Consensus 171 ~~---------------------~~g~ft~---~g~~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~ 213 (219)
T 3o0a_A 171 DF---------------------EKGAYEG---KGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEK 213 (219)
T ss_dssp CT---------------------TTCCCCS---CCEECSCGGGTTCBHHHHHHHHHHHHHHTTSEEE
T ss_pred cc---------------------ccccccc---cceEecCCCCCCCCHHHHHHHHHHHHHHCCCeee
Confidence 00 0011221 46554 6899999999999999999999999874
No 25
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.96 E-value=1.2e-29 Score=267.48 Aligned_cols=179 Identities=22% Similarity=0.258 Sum_probs=129.0
Q ss_pred eeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccC--
Q 039882 326 TLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRI-- 403 (1142)
Q Consensus 326 ~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~-- 403 (1142)
+.|+|++.+ .+.+|+||||||||||||+||||||+++|+.+...++ ..+. +|+.....
T Consensus 13 ~~v~F~~~~-----------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~-------~~~~--~~~~~~~~~~ 72 (196)
T 2ajg_A 13 VEITFNVND-----------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN-------PELA--AFIDECRNTK 72 (196)
T ss_dssp EEEEEEBTT-----------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTC-------HHHH--HHHHHHHHCC
T ss_pred EEEEEEeCC-----------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCH-------HHHH--HHHHHhhccc
Confidence 347787643 3468999999999999999999999999988753211 1111 22211110
Q ss_pred CCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccc
Q 039882 404 PKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEW 483 (1142)
Q Consensus 404 ~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~ 483 (1142)
..+.+++...+|.+|.|++|.|||+ ++.+||++++||++++|||+||+|||||++||+++ ++|||+
T Consensus 73 ~~~~~~~~~~k~g~l~G~~~~~P~~-~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~----------~k~~L~--- 138 (196)
T 2ajg_A 73 VAEAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFA----------SKYGLN--- 138 (196)
T ss_dssp CCGGGGGGSCCCEEEEEEEEECTTT-CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHH----------HHHTCC---
T ss_pred ccceEEEeeeeCCEEcCCEEECCCC-CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHH----------HHcCCC---
Confidence 1124455444555999999999997 57899999999999999999999999999999865 789974
Q ss_pred cCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccc-ccCCCCcchHhhhHHHHHHHHHc
Q 039882 484 VLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTML-VGDFAGKKVQDAKPLIRSKLIET 562 (1142)
Q Consensus 484 ~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~-~g~~~G~~v~ea~~~I~~~L~~~ 562 (1142)
++++|+ ++.|.. +| +.+.+|.+ +|+|. .|+|+|+.+.+|++.|++.|+++
T Consensus 139 -----i~~vI~-~~~g~~--------------~d------~~~g~y~~---~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~ 189 (196)
T 2ajg_A 139 -----IKPVIL-AADGSE--------------PD------LSQQALTE---KGVLFNSGEFNGLDHEAAFNAIADKLTAM 189 (196)
T ss_dssp -----CCCCBC-CTTSSC--------------CC------CSSSCCCS---CCCBCSSGGGTTCCHHHHHHHHHHHHHHT
T ss_pred -----ceeEEe-CCcCcc--------------cc------cccccccC---CceEecCcccCCeEHHHHHHHHHHHHHHC
Confidence 456665 333321 00 01112322 46553 68999999999999999999999
Q ss_pred CCeee
Q 039882 563 GEAIM 567 (1142)
Q Consensus 563 g~l~~ 567 (1142)
|++..
T Consensus 190 g~~~~ 194 (196)
T 2ajg_A 190 GVGER 194 (196)
T ss_dssp TSEEE
T ss_pred CCcee
Confidence 99863
No 26
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.95 E-value=1.7e-28 Score=246.19 Aligned_cols=133 Identities=26% Similarity=0.377 Sum_probs=110.3
Q ss_pred eeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCC
Q 039882 326 TLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPK 405 (1142)
Q Consensus 326 ~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~ 405 (1142)
..|+|++ + .+.+|+||||||||||||+||||||++ + +|
T Consensus 7 ~~v~F~~-~-----------~~~~l~i~TTrP~Tl~g~~aiav~P~~----------~------------~~-------- 44 (147)
T 1wka_A 7 YTLRYEV-E-----------GGGFIEIATVRPETVFADQAIAVHPED----------E------------RY-------- 44 (147)
T ss_dssp EEEEEEB-T-----------TSCEEEEEESCGGGGGGCCEEEECTTC----------T------------TT--------
T ss_pred EEEEEEC-C-----------CCcEEEEEECCceecccceEEEECCCC----------c------------hH--------
Confidence 4477876 4 235899999999999999999999993 2 23
Q ss_pred CCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccC
Q 039882 406 KPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVL 485 (1142)
Q Consensus 406 ~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~ 485 (1142)
++|+|++|.||++ ++.+||++++||++++|||+||+|||||++||+++ ++|||+
T Consensus 45 ----------~~l~g~~~~~P~~-~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~----------~~~~L~----- 98 (147)
T 1wka_A 45 ----------RHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIG----------ERHGLK----- 98 (147)
T ss_dssp ----------GGGTTCEEECTTS-SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHH----------HHHTCC-----
T ss_pred ----------HHhcCCEEECCCC-CCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHH----------HHcCCC-----
Confidence 4689999999997 57899999999999999999999999999999865 689974
Q ss_pred CcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccccccC----CCCcchHhhhHHHHHHHHH
Q 039882 486 PFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGD----FAGKKVQDAKPLIRSKLIE 561 (1142)
Q Consensus 486 ~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g~----~~G~~v~ea~~~I~~~L~~ 561 (1142)
++++|+ +.|+ |..|+ |+|+.+.+|++.|+++|++
T Consensus 99 ---~~~~id--~~G~-------------------------------------~~~~~~~~~~~Gl~~~~A~~~Ii~~L~~ 136 (147)
T 1wka_A 99 ---PVSVIN--LEGR-------------------------------------MEGERVPEALRGLDRFEARRKAVELFRE 136 (147)
T ss_dssp ---CCCSBC--TTSB-------------------------------------BCSTTSCGGGTTSBHHHHHHHHHHHHHH
T ss_pred ---cceEEC--CCCE-------------------------------------EcCCCcccccCCcCHHHHHHHHHHHHHH
Confidence 345553 3343 23455 9999999999999999999
Q ss_pred cCCeeee
Q 039882 562 TGEAIMY 568 (1142)
Q Consensus 562 ~g~l~~~ 568 (1142)
+|.+...
T Consensus 137 ~g~l~~~ 143 (147)
T 1wka_A 137 AGHLVKE 143 (147)
T ss_dssp HTCEEEE
T ss_pred CCCeeee
Confidence 9998753
No 27
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.87 E-value=4.8e-20 Score=217.76 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=113.8
Q ss_pred eEEeecccchhhHHHHHHHHHHHhcCCCCCc-EEEEeeEEe--ecCc--cccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWPR-GFRCNGHIM--LNSE--KMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 729 l~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk-~v~~hG~vl--~~G~--KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
+|+.|.||+ +||.. ++......|.. +|+ .++.||||. .+|+ |||||+||+|+|.+++++||+|++|||+++.
T Consensus 239 Iyv~G~dq~-~~f~~-l~~~l~~lG~~-~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~ 315 (464)
T 3fnr_A 239 INIWGADHH-GYIPR-MKAAMEFLGFD-SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK 315 (464)
T ss_dssp EEEEEGGGG-GGHHH-HHHHHHTTTCC-GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS
T ss_pred EEEecCcHH-HHHHH-HHHHHHHcCCC-ccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc
Confidence 567899999 68764 44444444543 345 778899995 4885 9999999999999999999999999999988
Q ss_pred CCCCCCccchHHHHHHHHH-----HHHHHHHHHHHHHhhhc--c--CC---CCCCCChhhHHHHHHHHHHHHHHHHHhhh
Q 039882 804 GDGVDDANFVFDTANTGIL-----RLTKEIAWMEEVLAVES--S--LR---TGPPSTYADRVFENEINIAVEMTDQHYKN 871 (1142)
Q Consensus 804 ~~~~~D~~fs~~~~~~~~~-----kl~n~~~~~~~~~~~~~--~--~~---~~~~~~~~D~~il~~l~~~i~~v~~~ye~ 871 (1142)
.+..|.+|+++.+.+..+ -+.....++..++.... . .+ ...+ ...|++++.++.++.+.+.+++++
T Consensus 316 -~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L-~~~e~~Ll~~L~~~~~~v~~a~~~ 393 (464)
T 3fnr_A 316 -KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSL-NQDGVNLLFEALNLKAVLNDAFEA 393 (464)
T ss_dssp -CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTC-CHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred -CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhC-ChHHHHHHHHHHHHHHHHHHHHHc
Confidence 578999999886632110 11112222223222211 1 11 1123 334999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhHHHHHhcC
Q 039882 872 YMFREALKTGFYDLQAARDEYRLSCG 897 (1142)
Q Consensus 872 ~~f~~a~~~~~~~l~~~~~~Y~~~~~ 897 (1142)
|+++.+++. +++|....|.|...+.
T Consensus 394 ~ep~~i~~y-L~~La~~~n~fY~~~~ 418 (464)
T 3fnr_A 394 RALQKIPDY-LKNLAANFHKFYNENK 418 (464)
T ss_dssp TCTTHHHHH-HHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHhCc
Confidence 999999987 7788887787766654
No 28
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.81 E-value=2.2e-18 Score=211.18 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=101.2
Q ss_pred EEEEeeEEeecCccccccCCCcCChHHHHHH-------------------------cChhhhhhhhhccCCCCCCccchH
Q 039882 760 GFRCNGHIMLNSEKMSKSTGNFRTLKQAIEE-------------------------FSADATRFSLADAGDGVDDANFVF 814 (1142)
Q Consensus 760 ~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~-------------------------yGaDalRl~la~~~~~~~D~~fs~ 814 (1142)
.++.||||+.+|+|||||+||+|++.+++++ +|+|++||++++. ....|.+|++
T Consensus 381 ~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECH
T ss_pred EEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecH
Confidence 3567899999999999999999999999999 9999999999998 4689999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhcc--CCCCCCCChhhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Q 039882 815 DTANTG----ILRLTKEIAWMEEVLAVESS--LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAA 888 (1142)
Q Consensus 815 ~~~~~~----~~kl~n~~~~~~~~~~~~~~--~~~~~~~~~~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~ 888 (1142)
+.+..+ ...+.+...++..++..... .+...+....+.-++..+.++.+.+.+++++++++.++.. +|++...
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~y-l~~La~~ 538 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQY-LLDLAAS 538 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHH-HHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHH
Confidence 987532 22444445445454433211 1100112355777888999999999999999999999987 7889999
Q ss_pred hHHHHHhc
Q 039882 889 RDEYRLSC 896 (1142)
Q Consensus 889 ~~~Y~~~~ 896 (1142)
.|.|...+
T Consensus 539 fn~fy~~~ 546 (592)
T 1iq0_A 539 WNAYYNAR 546 (592)
T ss_dssp HHHHHHCE
T ss_pred HHHHHHhc
Confidence 99988877
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.76 E-value=6.3e-17 Score=198.84 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=100.5
Q ss_pred EEEEeeEEeecCccccccCC--CcCChHHHHHH---------------------------cChhhhhhhhhccCCCCCCc
Q 039882 760 GFRCNGHIMLNSEKMSKSTG--NFRTLKQAIEE---------------------------FSADATRFSLADAGDGVDDA 810 (1142)
Q Consensus 760 ~v~~hG~vl~~G~KMSKS~G--NvI~p~~~i~~---------------------------yGaDalRl~la~~~~~~~D~ 810 (1142)
.++.||||+.+|.|||||+| |+|++.+++++ +|+|++||++++. ....|.
T Consensus 411 ~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~-~~~~~~ 489 (629)
T 2zue_A 411 YHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKY-SPDKKI 489 (629)
T ss_dssp EEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSS-CTTSCE
T ss_pred EEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhc-CCCCCC
Confidence 46788999999999999999 99999999999 9999999999998 568999
Q ss_pred cchHHHHHHH----HHHHHHHHHHHHHHHhhh--ccC--------CCC--CCCChhhHHHHHHHHHHHHHHHHHhhhccH
Q 039882 811 NFVFDTANTG----ILRLTKEIAWMEEVLAVE--SSL--------RTG--PPSTYADRVFENEINIAVEMTDQHYKNYMF 874 (1142)
Q Consensus 811 ~fs~~~~~~~----~~kl~n~~~~~~~~~~~~--~~~--------~~~--~~~~~~D~~il~~l~~~i~~v~~~ye~~~f 874 (1142)
+|+++.+.++ ..-+.++..++..++... ... ... .+....+.-++..+.++-+.+.++++++++
T Consensus 490 ~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p 569 (629)
T 2zue_A 490 IFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKP 569 (629)
T ss_dssp ECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred eecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999876311 112222222222222111 000 000 122456778999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHhc
Q 039882 875 REALKTGFYDLQAARDEYRLSC 896 (1142)
Q Consensus 875 ~~a~~~~~~~l~~~~~~Y~~~~ 896 (1142)
+.++.. +|++....|.|...+
T Consensus 570 ~~l~~y-l~~La~~fn~fy~~~ 590 (629)
T 2zue_A 570 HLIAWF-ANELASLFNKFYMDH 590 (629)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHHHHhc
Confidence 999987 788988888877665
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.76 E-value=2.8e-19 Score=216.50 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=57.9
Q ss_pred Eeecccchhh----HHHHHHHHHHHhcCCCCCcEEEEeeEEeec--CccccccCCCcCChHHHHHHcChhhhhhhhhccC
Q 039882 731 VSGKDLIQNH----LTFCIYNHTAIMSQRHWPRGFRCNGHIMLN--SEKMSKSTGNFRTLKQAIEEFSADATRFSLADAG 804 (1142)
Q Consensus 731 ~~G~D~ir~h----l~~~l~~~~al~~~~~~Pk~v~~hG~vl~~--G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~ 804 (1142)
+.|+|++..| ...-+.. ..++.. .| .+++||||+.+ |+|||||+||+|++.+++++||+|++|+|++..
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~--~alG~~-~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~- 309 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIK--EVYGKE-AP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARH- 309 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHH--HHHCCC-CC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSS-
T ss_pred CCCcCccCCCcchhhHHHHHH--HHhCCC-CC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhc-
Confidence 5599999977 2333332 234542 34 57888999966 999999999999999999999999999999986
Q ss_pred CCCCCccchHH-HHHHHH
Q 039882 805 DGVDDANFVFD-TANTGI 821 (1142)
Q Consensus 805 ~~~~D~~fs~~-~~~~~~ 821 (1142)
.+.+|.+|+.+ .+....
T Consensus 310 ~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 310 RPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp CTTSCEEECCSTTHHHHH
T ss_pred CCCCCceeCcchhHHHHH
Confidence 56789999988 555443
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.37 E-value=3.9e-10 Score=137.71 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=95.4
Q ss_pred CCCcEEEEeeEEeecCccccccCCCcCChHHHHHHcCh----------------------------hhhhhhhhccCCCC
Q 039882 756 HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSA----------------------------DATRFSLADAGDGV 807 (1142)
Q Consensus 756 ~~Pk~v~~hG~vl~~G~KMSKS~GNvI~p~~~i~~yGa----------------------------DalRl~la~~~~~~ 807 (1142)
++++.+...+|.+++ |||||+||+|++.|++++++. .++||+.++. ...
T Consensus 392 ~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~-~~~ 468 (607)
T 1f7u_A 392 EWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG-KRI 468 (607)
T ss_dssp GGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS-CTT
T ss_pred CcCcEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhcc-CCC
Confidence 455555555665554 699999999999999999844 4799999987 688
Q ss_pred CCccchHHHHHHH----HHHHHHHHHHHHHHHhhhccCC-----CCC---CCChhhHHHHHHHHHHHHHHHHHhhhccHH
Q 039882 808 DDANFVFDTANTG----ILRLTKEIAWMEEVLAVESSLR-----TGP---PSTYADRVFENEINIAVEMTDQHYKNYMFR 875 (1142)
Q Consensus 808 ~D~~fs~~~~~~~----~~kl~n~~~~~~~~~~~~~~~~-----~~~---~~~~~D~~il~~l~~~i~~v~~~ye~~~f~ 875 (1142)
.+.+|+++.+..+ --.+.....++..++.....+. ..+ +....++.++..|.++-+.+.+++++++.+
T Consensus 469 s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~ 548 (607)
T 1f7u_A 469 NNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPT 548 (607)
T ss_dssp CCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHH
T ss_pred CCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999976421 1123333333333333220110 011 223556778889999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHhcC
Q 039882 876 EALKTGFYDLQAARDEYRLSCG 897 (1142)
Q Consensus 876 ~a~~~~~~~l~~~~~~Y~~~~~ 897 (1142)
.++.. +|+|....+.|-..|.
T Consensus 549 ~l~~Y-l~~La~~fn~fY~~~~ 569 (607)
T 1f7u_A 549 TVVTY-LFKLTHQVSSCYDVLW 569 (607)
T ss_dssp HHHHH-HHHHHHHHHHHHHHCC
T ss_pred HHHHH-HHHHHHHHHHHHHhCC
Confidence 99987 7788877777655553
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.24 E-value=0.00033 Score=77.98 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.5
Q ss_pred hHHHHHHHHccccccccc-ceEecCCChhhHHHHHHHHHHHHHcCccee
Q 039882 247 PLAKEDLKAFGLGCDWRR-SFVTTEINPFFDSFVQWQMRKLKSMGKIIK 294 (1142)
Q Consensus 247 ~~~~~~~~~lG~~~DW~r-~y~T~d~np~y~~~v~~~F~~L~~~GlIy~ 294 (1142)
..+.++|+.||+ +|+. .|...+ +....+....+|.++|++|.
T Consensus 58 ~~I~~dL~~LGl--~~D~~~~~qSe----r~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 58 ETILRQLEHYGL--HWDGDVLWQSQ----RHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp HHHHHHHHHTTC--CCSSCCEEGGG----CHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCC--CCCCCCeeeeC----CHHHHHHHHHHHHHcCCccc
Confidence 357899999996 6665 555544 34456667789999999984
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.20 E-value=0.00033 Score=83.48 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=53.9
Q ss_pred eEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCC---------------cCChHHHHHH-cC
Q 039882 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN---------------FRTLKQAIEE-FS 792 (1142)
Q Consensus 729 l~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GN---------------vI~p~~~i~~-yG 792 (1142)
..+-|.|++.+-..+..+.. ++ +. +.|+. ..+|+|..+|+|||||+|| +.+..++.++ |.
T Consensus 289 hviRG~D~~~nt~~Q~~l~~-al-G~-~~P~y-~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~ 364 (553)
T 3aii_A 289 HVLRGKDHLANREKQEYLYR-HL-GW-EPPEF-IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIR 364 (553)
T ss_dssp EEEC-----CHHHHHHHHHH-HH-TC-CCCEE-ECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCC
T ss_pred eEeccHhhhhCHHHHHHHHH-Hc-CC-CCCeE-EEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCC
Confidence 33446676665443333222 22 32 45665 4889888999999999998 6778888887 99
Q ss_pred hhhhhhhhhccCCCCCCccchHHHHHHHH
Q 039882 793 ADATRFSLADAGDGVDDANFVFDTANTGI 821 (1142)
Q Consensus 793 aDalRl~la~~~~~~~D~~fs~~~~~~~~ 821 (1142)
++++|.|+++.+-...+.+|+++.+....
T Consensus 365 PeaIr~fl~~~G~s~~~~~~s~~~L~~~~ 393 (553)
T 3aii_A 365 PEAIRKLMVEIGVKIADSTMSWKKIYGLN 393 (553)
T ss_dssp HHHHHHHHHHHTTCSSCBCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCccccccHHHHHHHH
Confidence 99999999988765678999988765543
No 34
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.08 E-value=0.00059 Score=80.97 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=49.1
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
.+..+-|.|++.+- .-.+....++ +. +.| .+..+++++ .+|+||||++||+ +..++.++ |-++++|.+++..+
T Consensus 219 ithvirG~D~~~~t-~~q~~l~~aL-G~-~~p-~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 219 ITHVIRGDDHLSNT-LRQLALYEAF-EK-APP-VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp CSEEEEEGGGHHHH-HHHHHHHHHT-TC-CCC-EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CCeEEEChhHHHhH-HHHHHHHHHc-CC-CCC-eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 34456789987533 2222222222 32 345 355567655 7999999999999 88888875 88999999988764
No 35
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.03 E-value=0.0007 Score=80.69 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=58.6
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccCCC---------------cCChHHHHHH-
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN---------------FRTLKQAIEE- 790 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~GN---------------vI~p~~~i~~- 790 (1142)
++..+-|.|++.+-..+..+.. ++ +....|+.+ .+|++..+|.|||||+|| +++..++.++
T Consensus 224 ITHviRg~e~~~n~~~q~~l~~-al-g~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rG 300 (553)
T 1qtq_A 224 ITHSLCTLEFQDNRRLYDWVLD-NI-TIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300 (553)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHH-TS-CCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHT
T ss_pred cceEeeccchhhhHHHHHHHHH-Hc-CCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCC
Confidence 3445557776655433332221 11 322245554 889999999999999997 7788899987
Q ss_pred cChhhhhhhhhccCCCCCCccchHHHH
Q 039882 791 FSADATRFSLADAGDGVDDANFVFDTA 817 (1142)
Q Consensus 791 yGaDalRl~la~~~~~~~D~~fs~~~~ 817 (1142)
|.++++|.|++..+-...|..++...+
T Consensus 301 y~PeAirnfl~~lG~s~~~~~~e~~~l 327 (553)
T 1qtq_A 301 YTAASIREFCKRIGVTKQDNTIEMASL 327 (553)
T ss_dssp CCHHHHHHHHHHHCCCSSCCCBCHHHH
T ss_pred CCHHHHHHHHHHcCCCCCccccchhhH
Confidence 999999999998765444444444443
No 36
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.02 E-value=0.00046 Score=82.26 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=30.9
Q ss_pred hHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCccee
Q 039882 247 PLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIK 294 (1142)
Q Consensus 247 ~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~ 294 (1142)
..+.++|+.||+ +|+..|..++ |-........+|.++|+.|.
T Consensus 149 ~~I~edL~wLGl--~wd~~~~qSd----r~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 149 DMIPADLEWLGV--EWDETVIQSD----RMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHTC--CCSEEEEGGG----GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCccccc----CHHHHHHHHHHHHHcCCcee
Confidence 356889999997 5556666654 44455666789999999985
No 37
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.84 E-value=0.0041 Score=75.47 Aligned_cols=41 Identities=27% Similarity=0.117 Sum_probs=32.5
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP 144 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~ 144 (1142)
++..+=++ |.|||.|||||+++....+.+||. ..|.-++.+
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi 168 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI 168 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe
Confidence 35666676 999999999999999999999986 355555443
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0014 Score=73.96 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=50.5
Q ss_pred cCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhc
Q 039882 724 WYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLAD 802 (1142)
Q Consensus 724 ~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~ 802 (1142)
.|.+|+.+.|.||..+. ..+.-.... ++. + +-..+++.++. .+|+|||||.||.|++.+ .+|.+|..+.+
T Consensus 168 ~~~~~~v~~G~DQ~~~~-~l~rdla~~-~~~-~-~p~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~ 238 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIH-MLARENLPR-LGY-S-SPVCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRK 238 (323)
T ss_dssp HTTCSEEEEEGGGHHHH-HHHHHHGGG-GTC-C-CCEEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHT
T ss_pred hcCCCEEEechhhHHHH-HHHHHHHHh-cCC-C-CceEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHh
Confidence 36899999999998733 333221111 121 1 23456677776 799999999999999986 48999998887
Q ss_pred c
Q 039882 803 A 803 (1142)
Q Consensus 803 ~ 803 (1142)
+
T Consensus 239 a 239 (323)
T 2cyb_A 239 A 239 (323)
T ss_dssp S
T ss_pred c
Confidence 6
No 39
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=96.72 E-value=0.0014 Score=81.59 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=30.0
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
+..=+ +|.|||.||||||++.++...++| +|++.|..=+|.+
T Consensus 67 v~tRF-aPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDT 108 (851)
T 2hz7_A 67 VVTRF-PPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDT 108 (851)
T ss_dssp CEEEE-CCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCC
T ss_pred eEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcC
Confidence 33334 589999999999999998766666 4555665555443
No 40
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=96.58 E-value=0.0035 Score=74.06 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.3
Q ss_pred EEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 761 FRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 761 v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
+..+.+++ .+|+||||..|. ++..++.+. |.+++++=||+..|
T Consensus 251 f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 251 YAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp EEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred EEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 44445555 689999999986 577777754 88999999998765
No 41
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=96.34 E-value=0.0039 Score=74.30 Aligned_cols=37 Identities=35% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCcc
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT 150 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~ 150 (1142)
+|.|||.||||||++.++...+|| +|+..|..=+|.+
T Consensus 32 aPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDT 68 (553)
T 1qtq_A 32 PPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDT 68 (553)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCC
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCC
Confidence 599999999999999998777776 4555555545444
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=96.29 E-value=0.0032 Score=74.85 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=50.9
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
++..+-|.|++.+--....+. .+ ++. +.| .+..+++++ .+|+|||||.||+ ...++.++ |.++++|.|++..+
T Consensus 204 IthviRG~D~~~~t~~q~~l~-~a-lg~-~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 204 ITDVIRGEDHIGNTPKQILLY-EA-LGA-TPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp CSEEEEEGGGTTHHHHHHHHH-HH-TTC-CCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred CCeEEEchhhhhCHHHHHHHH-HH-cCC-CCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 455566888886543222222 22 233 344 555667766 8999999999998 78888875 89999999999865
No 43
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=95.98 E-value=0.017 Score=68.49 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=35.0
Q ss_pred EEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 760 GFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 760 ~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
.+..+.+++ .+|+||||+.|+ ++..++.+. |-++++|-|++..+
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG 286 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 286 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTT
T ss_pred eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 344456665 799999999999 478888774 88999999998765
No 44
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=95.44 E-value=0.023 Score=70.81 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=60.4
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCC-CcEEEEeeEEeecCccccccCCC---------------cCChHHHHHH
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHW-PRGFRCNGHIMLNSEKMSKSTGN---------------FRTLKQAIEE 790 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~-Pk~v~~hG~vl~~G~KMSKS~GN---------------vI~p~~~i~~ 790 (1142)
++..+-|.|++.+-..+.++.. ++ +. +. |+. ..+||+..+|.|||||+|| +++..++.++
T Consensus 264 ITHViRG~D~~~n~~~q~~l~~-al-G~-~~~P~~-~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~r 339 (851)
T 2hz7_A 264 VTHSMCSLEFVDNRAIYDWLME-KL-NF-DPRPHQ-YEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRL 339 (851)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHH-HT-TC-SSCCEE-EEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHH
T ss_pred cceeecchhhhhChHHHHHHHH-Hc-CC-CCCCCc-eEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHc
Confidence 4455667887766544443332 22 32 22 444 4889999999999999987 5678888877
Q ss_pred -cChhhhhhhhhccCCCCCCccchHHHHH
Q 039882 791 -FSADATRFSLADAGDGVDDANFVFDTAN 818 (1142)
Q Consensus 791 -yGaDalRl~la~~~~~~~D~~fs~~~~~ 818 (1142)
|.++++|.|++..+-...|..++...+.
T Consensus 340 Gy~PeAIr~fl~~lG~s~~~~~~e~~~le 368 (851)
T 2hz7_A 340 GVTPEAVRAFAAQIGVSRTNRTVDIAVYE 368 (851)
T ss_dssp TCCHHHHHHHHHHSCCCSSCEEECHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCcccccHHHHH
Confidence 9999999999988754455555554443
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=95.40 E-value=0.021 Score=68.35 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=48.5
Q ss_pred eEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccCC-
Q 039882 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAGD- 805 (1142)
Q Consensus 729 l~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~~- 805 (1142)
-.+-|.|++.+=-...++. .++ +- +.| .+..+.+++ .+|+|+||..|.. ...+..+. |=++|+.=||+..|-
T Consensus 232 HViRG~D~l~sTp~q~~l~-~al-g~-~~P-~y~H~pli~~~~g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalLGws 306 (512)
T 4gri_A 232 HVLRAQEWVSSGPLHVLLY-KAF-KW-KPP-IYCHLPMVMGNDGQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLLGWS 306 (512)
T ss_dssp EEEEEGGGGGGHHHHHHHH-HHH-TC-CCC-EEEEECCCBCTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHSSBC
T ss_pred eeccccccccccHHHHHHH-HHc-CC-CCC-eEEecchhccccccccCcccccc-cHHHHHHcCCChHHHHHHHHHhCCC
Confidence 4455777776422222221 222 22 233 456667777 6899999998865 56666654 888999888877542
Q ss_pred CCC-CccchHHH
Q 039882 806 GVD-DANFVFDT 816 (1142)
Q Consensus 806 ~~~-D~~fs~~~ 816 (1142)
..+ .--|+.+.
T Consensus 307 ~~~~~Eifs~~e 318 (512)
T 4gri_A 307 YDDKREFFSKND 318 (512)
T ss_dssp SSSSCCCCCHHH
T ss_pred CcccchhhhHHH
Confidence 122 23466543
No 46
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=95.34 E-value=0.027 Score=66.50 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=46.0
Q ss_pred EEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhhccC
Q 039882 730 RVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADAG 804 (1142)
Q Consensus 730 ~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la~~~ 804 (1142)
.+-|.|++.+--.+..+. .++ +. +.| .+..+++++ .+|+||||++||+ +..++.+. |-++++|-|++..+
T Consensus 203 virG~D~~~~t~~q~~l~-~al-g~-~~p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 274 (468)
T 1j09_A 203 VIRAEEWLVSTPIHVLLY-RAF-GW-EAP-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG 274 (468)
T ss_dssp EEEEGGGGGGHHHHHHHH-HHH-TC-CCC-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS
T ss_pred EEEChhhhhhHHHHHHHH-HHc-CC-CCC-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc
Confidence 345888876542222222 222 32 234 334445655 7999999999999 77777764 88999999998765
No 47
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=95.32 E-value=0.035 Score=65.86 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=47.0
Q ss_pred ceEEeecccchhhHHHHHHHHHHHh----cCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhh
Q 039882 728 DLRVSGKDLIQNHLTFCIYNHTAIM----SQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLA 801 (1142)
Q Consensus 728 Dl~~~G~D~ir~hl~~~l~~~~al~----~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la 801 (1142)
+..+-|.|++.+--... ....++. +. +.| .+..+.+++ .+|+||||+.|++ +..++.+. |.++++|.|++
T Consensus 210 thviRG~D~~~~t~~q~-~l~~aL~~~g~g~-~~P-~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~ 285 (498)
T 2ja2_A 210 THVLRGEDLLPSTPRQL-ALHQALIRIGVAE-RIP-KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLA 285 (498)
T ss_dssp CEEEEEGGGGGGHHHHH-HHHHHHHHTTSCC-CCC-EEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHH
T ss_pred CEEEEChhhhhccHHHH-HHHHHHHhhcCCC-CCC-eEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHH
Confidence 34456888887542111 1222331 32 224 334445555 7999999999995 77777775 88999999998
Q ss_pred ccC
Q 039882 802 DAG 804 (1142)
Q Consensus 802 ~~~ 804 (1142)
..+
T Consensus 286 ~lG 288 (498)
T 2ja2_A 286 LLG 288 (498)
T ss_dssp TSS
T ss_pred HhC
Confidence 865
No 48
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.30 E-value=0.0082 Score=71.31 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHHHHHccccccccc-ceEecCCChhhHHHHHHHHHHHHHcCccee
Q 039882 248 LAKEDLKAFGLGCDWRR-SFVTTEINPFFDSFVQWQMRKLKSMGKIIK 294 (1142)
Q Consensus 248 ~~~~~~~~lG~~~DW~r-~y~T~d~np~y~~~v~~~F~~L~~~GlIy~ 294 (1142)
.+.++|+.||+ ||+. +|..++. -...+....+|.++|+.|.
T Consensus 55 ~i~~dL~wLGl--~wde~~~~QS~r----~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 55 NILEGLQWLGL--TWDEGPYFQSDR----LDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHTTC--CCSEEEEEGGGC----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCCCCccccCC----HHHHHHHHHHHHHCCCceE
Confidence 46789999996 7876 6666553 3344455678999999986
No 49
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.06 E-value=0.01 Score=66.91 Aligned_cols=72 Identities=17% Similarity=-0.022 Sum_probs=48.0
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
++|+.+.|.||..+. ..++=...-+.. . +...+++.++. .+|+|||||.||.|+..+ ++-.++.++=.+.+.
T Consensus 191 ~~~v~~gG~DQ~~~i-~l~rdla~r~n~-~--~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNI-TSGIDLTRRLHQ-N--QVFGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCHHHH-HHHHHHHHHHHC-C--CCEEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhHHHH-HHHHHHHHHhCC-C--CceeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 899999999998754 333322222222 1 23445666666 699999999999998877 556666666666554
No 50
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.06 E-value=0.016 Score=65.76 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=47.8
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHH---hcC-CCCCcEEEEe-eEEe-ecCccccccCCCcCChHHHHHHcChhhhhh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAI---MSQ-RHWPRGFRCN-GHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRF 798 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al---~~~-~~~Pk~v~~h-G~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl 798 (1142)
|-+|+.+.|.||..+. ..++=...-+ ++. -+-|..+++| .++. .+|+|||||.||.|++.+ .++.++=
T Consensus 152 ~~~~~vpvG~DQ~~hi-~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHI-ELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHH-HHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHH-HHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 7799999999999744 3333222211 221 1346666654 4454 789999999999998776 5666666
Q ss_pred hhhcc
Q 039882 799 SLADA 803 (1142)
Q Consensus 799 ~la~~ 803 (1142)
.+..+
T Consensus 226 Ki~~a 230 (340)
T 2g36_A 226 TILRM 230 (340)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55554
No 51
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=94.88 E-value=0.011 Score=68.08 Aligned_cols=75 Identities=13% Similarity=-0.040 Sum_probs=44.8
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHH-------------hcCCC-CCcEEEEeeEEe-ecCccccccCCCcCChHHHHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAI-------------MSQRH-WPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIE 789 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al-------------~~~~~-~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~ 789 (1142)
+.+|+.+.|.||. +|+...+=...-+ .+... -+...+++.++. .+|+|||||.||.|+..+-
T Consensus 231 ~~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~-- 307 (392)
T 1y42_X 231 QGVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY-- 307 (392)
T ss_dssp HCEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT--
T ss_pred CCccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC--
Confidence 4899999999995 4555443221111 11111 124455667766 7999999999999987652
Q ss_pred HcChhhhhhhhhc
Q 039882 790 EFSADATRFSLAD 802 (1142)
Q Consensus 790 ~yGaDalRl~la~ 802 (1142)
+-+++.++=++.+
T Consensus 308 ~tsp~~i~qki~~ 320 (392)
T 1y42_X 308 QTSVFDFYGYFVR 320 (392)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 1334444444443
No 52
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.77 E-value=0.011 Score=66.55 Aligned_cols=61 Identities=20% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCcceEEeecccchhhHHHHHHHHH---HHhcC-CCCCcEEE--EeeEEe-ecCccccccCCCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHT---AIMSQ-RHWPRGFR--CNGHIM-LNSEKMSKSTGNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~---al~~~-~~~Pk~v~--~hG~vl-~~G~KMSKS~GNvI~p~~ 786 (1142)
|-+|+...|.||...+ ..+.=... ..++. -+.|+.++ ++.++. .+|+|||||.||.|+..|
T Consensus 138 ~~~~~vpvG~DQ~~hi-~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHV-EIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEECCGGGHHHH-HHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEEeccchHHHH-HHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 6789999999998754 33321111 11221 13456665 355666 799999999999997654
No 53
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=94.75 E-value=0.012 Score=67.15 Aligned_cols=73 Identities=16% Similarity=0.043 Sum_probs=36.3
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
+.+|+.+.|.||..+. ..++=...-+ +.. |...+++.++. .+|+|||||.||.|+..+ ++-.++.++=.+.+.
T Consensus 209 ~~~~i~p~G~DQ~~~i-~l~rdla~r~-n~~--~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 209 YGCRVQLGGSDQLGNI-MSGYEFINKL-TGE--DVFGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp HCCCEEEEEGGGHHHH-HHHHHHHHHH-SSC--CCEEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCCcEEeccHHHHHHH-HHHHHHHHHh-CCC--CccccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 3899999999998754 3333222222 222 23455566665 799999999999998776 245566666666654
No 54
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.61 E-value=0.017 Score=67.37 Aligned_cols=74 Identities=18% Similarity=0.005 Sum_probs=46.6
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
|.+|+.+.|.||..+. ...+=...-+.+.. |...+++.++. .+|+|||||.||.|+..+ ++-.++.++=++.+.
T Consensus 185 ~~~~i~~gG~DQ~~ni-~~grdla~r~~~~~--~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNI-TSGIELMRRMYGQT--DAYGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWINQ 259 (420)
T ss_dssp HCEEEEEEEGGGHHHH-HHHHHHHHHHHCCC--CCEEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCCcEEeccHHHHHHH-HHHHHHHHHhcCCC--CeeEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 4899999999998754 33332222220221 23455666666 799999999999998765 233455555455543
No 55
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.60 E-value=0.026 Score=65.88 Aligned_cols=70 Identities=23% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCc-cccccCCCcCChHHHHHHcChhhhhhhhhc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSE-KMSKSTGNFRTLKQAIEEFSADATRFSLAD 802 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~-KMSKS~GNvI~p~~~i~~yGaDalRl~la~ 802 (1142)
+.+|+.+.|.||.. |+....=...- ++ .-|..++++.++. .+|. |||||.||.|++.+ .++.++=.+.+
T Consensus 186 l~~~l~~gG~DQ~~-ni~l~rdlarr-~~--~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~ 256 (432)
T 1h3f_A 186 IRADVEMGGTDQRF-NLLVGREVQRA-YG--QSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMR 256 (432)
T ss_dssp HTCSEEEEEGGGHH-HHHHHHHHHHH-TT--CCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred cCccEEEechHHHH-HHHHHHHHHHH-hC--CCCceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhC
Confidence 34999999999985 54444322222 12 2345666777776 7896 99999999999887 77777777766
Q ss_pred c
Q 039882 803 A 803 (1142)
Q Consensus 803 ~ 803 (1142)
.
T Consensus 257 ~ 257 (432)
T 1h3f_A 257 V 257 (432)
T ss_dssp S
T ss_pred C
Confidence 5
No 56
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.34 E-value=0.019 Score=66.70 Aligned_cols=74 Identities=14% Similarity=-0.043 Sum_probs=46.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhcc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADA 803 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~ 803 (1142)
|.+|+.+.|.||..+. ...+=...-+.+.. |...+++.++. .+|+|||||.||.|+..+ ++-.++.++=++.+.
T Consensus 184 ~~~~i~~gG~DQ~~ni-~lgrdlarr~~~~~--~~~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNI-TAGLELIRKTKGEA--RAFGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWINT 258 (419)
T ss_dssp HCEEEEEEEGGGHHHH-HHHHHHHHHHHC----CCEEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHTC
T ss_pred CCCcEEeccHHHHHHH-HHHHHHHHHhcCCC--CeeecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 4899999999998755 33332222220211 23455666666 799999999999998765 234455555555543
No 57
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=93.92 E-value=0.03 Score=65.21 Aligned_cols=73 Identities=16% Similarity=0.024 Sum_probs=46.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCC-cCChHHHHHHcChhhhhhhhhc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGN-FRTLKQAIEEFSADATRFSLAD 802 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GN-vI~p~~~i~~yGaDalRl~la~ 802 (1142)
|.+|+.+.|.||..+. ...+=...-+... |...+++-++. .+|+|||||.|| .|+..+ ++-.++.++=++.+
T Consensus 186 ~~~~i~~gG~DQ~~ni-~lgrdlarr~~~~---~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 186 HGCTLQIGGADQWGNI-IAGVRLVRQKLGA---TVHALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp HCCCEEEECSTTHHHH-HHHHHHHHHHHCC---CCEEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHH-HHHHHHHHHhCCC---CccccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 3899999999998754 3333222222222 24455666666 799999999999 887664 23445555555554
Q ss_pred c
Q 039882 803 A 803 (1142)
Q Consensus 803 ~ 803 (1142)
.
T Consensus 260 ~ 260 (432)
T 2jan_A 260 T 260 (432)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.85 E-value=0.026 Score=64.23 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcC-CCCCcEEEE-eeEEe-ecCc-cccccCCCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQ-RHWPRGFRC-NGHIM-LNSE-KMSKSTGNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~-~~~Pk~v~~-hG~vl-~~G~-KMSKS~GNvI~p~~ 786 (1142)
|-+|+.+.|.||..+ +..++=...- .++. -+-|..+++ +.++. .+|+ |||||.||.|++.+
T Consensus 161 ~~~~~vpvG~DQ~~h-i~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d 228 (351)
T 1yi8_B 161 FGATLVPVGDDQLPM-LEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD 228 (351)
T ss_dssp HTCSEEEECGGGHHH-HHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC
T ss_pred cCCCEEEecCCcHHH-HHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC
Confidence 568999999999974 3433322211 1231 134666665 34555 6897 99999999887654
No 59
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.84 E-value=0.033 Score=63.99 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCccccccCCC-cCChHHHHHHcChhhhhhhhhc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGN-FRTLKQAIEEFSADATRFSLAD 802 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GN-vI~p~~~i~~yGaDalRl~la~ 802 (1142)
|-+|+.+.|.||..+. ...+-....+ +. .- -..+++.++. .+|+|||||.|| .|++.|= ++.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~~~-~l~rdl~~r~-~~-~~-p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIF-TFAEKYLPAL-GY-SK-RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHHHH-HHHHHHGGGG-TC-CC-CEEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred hcCCEEEcChhHHHHH-HHHHHHHHHc-CC-CC-CEEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 6789999999998754 3332221111 11 11 3345566766 799999999999 6876543 4555544443
No 60
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.54 E-value=0.026 Score=63.91 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=45.7
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcC-CCCCcEEEEe--eEEe-ecC-ccccccCCCcCChHHHHHHcChhhh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQ-RHWPRGFRCN--GHIM-LNS-EKMSKSTGNFRTLKQAIEEFSADAT 796 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~-~~~Pk~v~~h--G~vl-~~G-~KMSKS~GNvI~p~~~i~~yGaDal 796 (1142)
|-+|+.+.|.||..+. ..++=...- .++. -+.|..+++. -++. .+| +|||||.||.|++.+- ++.+
T Consensus 140 ~~~~lvp~G~DQ~~~i-~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~i 213 (337)
T 2el7_A 140 YKADTVPVGEDQVQHI-ELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EESI 213 (337)
T ss_dssp TTCCEEECCGGGCHHH-HHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHHH
T ss_pred hCCcEEEcccchHHHH-HHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcCC-----HHHH
Confidence 7799999999999844 333221111 1232 1335555442 3555 799 9999999999987652 5555
Q ss_pred hhhhhcc
Q 039882 797 RFSLADA 803 (1142)
Q Consensus 797 Rl~la~~ 803 (1142)
+=.+.++
T Consensus 214 ~~Ki~~a 220 (337)
T 2el7_A 214 WQKIQHL 220 (337)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 5555544
No 61
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.75 E-value=0.058 Score=62.38 Aligned_cols=58 Identities=22% Similarity=0.155 Sum_probs=28.7
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ec-CccccccCCCc-CChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LN-SEKMSKSTGNF-RTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~-G~KMSKS~GNv-I~p~~ 786 (1142)
|.+|+.+.|.||..+. ...+-....+ +. +- ...+++.++. .+ |+|||||.||. |++.|
T Consensus 181 ~~~~~v~~G~DQ~~~~-~l~rdl~~r~-~~-~~-p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIF-VLAEENLPSL-GY-KK-RAHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp TTCSEEEEEGGGHHHH-HHHHHHGGGG-TC-CC-CEEEEECCCCCCC----------CCSCBTTC
T ss_pred hCCCEEecCccHHHHH-HHHHHHHHHc-CC-CC-CEEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 7899999999998744 3332211111 11 11 3445566666 78 99999999996 87654
No 62
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=91.88 E-value=0.067 Score=59.97 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecC-ccccccCCCcCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNS-EKMSKSTGNFRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G-~KMSKS~GNvI~p~~ 786 (1142)
|-+|+.+.|.||..+. .+..- +.. +- -.++++.++. .+| +|||||.||.|++.+
T Consensus 162 ~~~~~v~~G~DQ~~~~----~l~R~-i~~--~~-~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH----MLARE-LLP--KK-VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp HTCSEEEEEGGGHHHH----HHHHH-HSS--SC-CEEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred hCCCEEEcChhHHHHH----HHHHH-hcC--CC-cEEeeccccccCCcccccCCCCcceecCCC
Confidence 4689999999999843 11111 112 11 2344555555 689 799999999998654
No 63
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=91.33 E-value=0.3 Score=57.89 Aligned_cols=40 Identities=25% Similarity=0.137 Sum_probs=33.8
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
.++++-=.|.|||.|||||+++..+.|.+||. ..|+-|+.
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLR 51 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILR 51 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEEC
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEE
Confidence 35556667999999999999999999999998 67877766
No 64
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=91.09 E-value=0.1 Score=59.31 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=38.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcC-CCCCcEEEE--eeEEe-ecC--ccccccCCC---cCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQ-RHWPRGFRC--NGHIM-LNS--EKMSKSTGN---FRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~-~~~Pk~v~~--hG~vl-~~G--~KMSKS~GN---vI~p~ 785 (1142)
|-+|+.+.|.||.... ..+.=.... .++. -+.|..+++ +.++. ++| +|||||.|| .|.+.
T Consensus 146 ~~a~~vpvG~DQ~~~l-el~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~ 217 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHL-ELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLD 217 (348)
T ss_dssp TCCSEEECCGGGHHHH-HHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTT
T ss_pred hCccEEEecccHHHHH-HHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeec
Confidence 6799999999999844 333211111 1231 134555554 45555 678 999999999 78654
No 65
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.97 E-value=0.11 Score=58.39 Aligned_cols=59 Identities=29% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHH---HHhcC-CCCCcEEEE--eeEEe-ecC--ccccccCCC-c--CCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHT---AIMSQ-RHWPRGFRC--NGHIM-LNS--EKMSKSTGN-F--RTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~---al~~~-~~~Pk~v~~--hG~vl-~~G--~KMSKS~GN-v--I~p 784 (1142)
|-+|+.+.|.||..+. ..+.=... ..++. -+.|..+++ +.++. .+| +|||||.|| . |++
T Consensus 136 ~~~~~vpvG~DQ~~~i-el~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L 206 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHI-ELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITL 206 (328)
T ss_dssp TTCSEEECCGGGHHHH-HHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred hCCCEEecccchHHHH-HHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeee
Confidence 6799999999999744 33321111 11221 134566664 34555 688 999999999 5 754
No 66
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=90.61 E-value=0.14 Score=58.59 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCc-EEEEeeEEe-e-cCc-cccccC-CCcCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPR-GFRCNGHIM-L-NSE-KMSKST-GNFRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk-~v~~hG~vl-~-~G~-KMSKS~-GNvI~p~ 785 (1142)
|-+|+.+.|.||-.++ ..+.=...- ++. .+ + .++++.++. + +|. |||||. ||.|+..
T Consensus 199 l~ad~vpgG~DQ~~~l-~l~Rdla~r-~~~-~~-~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVN-MLAREYCDI-KKI-KK-KPVILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp TTCSEECCBGGGHHHH-HHHHHHHHH-HTC-SC-CCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred cCCcEEEcchhhHHHH-HHHHHHHHH-hCC-CC-CceEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 5689999999998754 333211111 222 11 3 456677766 4 885 999999 4788753
No 67
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=90.22 E-value=0.14 Score=59.68 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=31.4
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecC--ccccccCCC-cCChHH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNS--EKMSKSTGN-FRTLKQ 786 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G--~KMSKS~GN-vI~p~~ 786 (1142)
|-+++...|.||..+. ..+.=...- ++ .+-|. ++++.++. .+| +|||||.|| .|++.+
T Consensus 248 ~~~~lvp~G~DQ~~~i-~l~Rdla~r-~~-~~~p~-~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYF-RVCRDVADK-LK-YSKPA-LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHH-HHHHHHHHH-HT-SCCCE-EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHH-HHHHHHHHH-hC-CCCce-eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 5688999999998754 333221111 12 13333 45566666 789 999999999 787544
No 68
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=90.20 E-value=0.19 Score=57.44 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCC-cEEEEeeEEe-ec-----------------Ccccccc-CCCcCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-RGFRCNGHIM-LN-----------------SEKMSKS-TGNFRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~P-k~v~~hG~vl-~~-----------------G~KMSKS-~GNvI~p 784 (1142)
|-+|+.+.|.||..++ ..++= .+ ...+ .+ -.++++.++. .+ |+||||| .||.|+.
T Consensus 176 ~~~~~v~~G~DQ~~~~-~l~rd--la-~r~~-~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L 250 (364)
T 2cya_A 176 MDLDIALGGMDQRKAH-MLARD--VA-EKLG-RKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFV 250 (364)
T ss_dssp TTCSEEEEEGGGHHHH-HHHHH--HH-TTTT-CCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBT
T ss_pred cCCCEEeccchHHHHH-HHHHH--HH-HHcC-CCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeec
Confidence 6799999999999754 22221 11 1111 12 2344555555 56 7999999 7898886
Q ss_pred HHHHHHcChhhhhhhhhc
Q 039882 785 KQAIEEFSADATRFSLAD 802 (1142)
Q Consensus 785 ~~~i~~yGaDalRl~la~ 802 (1142)
.+- ++.++=.+..
T Consensus 251 ~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 251 VDS-----DDDIRRKIRK 263 (364)
T ss_dssp TCC-----HHHHHHHHHT
T ss_pred cCC-----HHHHHHHHHh
Confidence 543 4444444443
No 69
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=89.72 E-value=0.22 Score=57.18 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=34.8
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecCc-ccccc-CCCcCChHH
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSE-KMSKS-TGNFRTLKQ 786 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G~-KMSKS-~GNvI~p~~ 786 (1142)
+++...|.||.... ..+.=...- ++. +-| .++.+.++. ++|. ||||| .||.|...|
T Consensus 225 a~~VpvG~DQ~~hl-~l~Rdla~r-~n~-~~p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQFH-SIIDQIATT-LNF-IQP-TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHHHH-HHHHHHHHH-HTC-CCC-EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHHHH-HHHHHHHHH-cCC-CCc-eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 66667799998754 333221111 122 334 555666666 6885 99999 899997543
No 70
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=88.93 E-value=0.16 Score=58.62 Aligned_cols=56 Identities=18% Similarity=0.042 Sum_probs=25.1
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecC--ccccccCCCcCChHH
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNS--EKMSKSTGNFRTLKQ 786 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G--~KMSKS~GNvI~p~~ 786 (1142)
+|+...|.||-.+. ..+.=...-+ +. +- ..++.+-++. .+| .|||||.||.|++.|
T Consensus 225 ~~lvp~G~DQ~~~i-~l~Rdla~r~-~~-~~-p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYF-RLTRDIAPRL-GY-LK-PAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHH-HHHHHTHHHH-TC-CC-CEEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHH-HHHHHHHHHc-CC-CC-ceeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 78999999998754 3332111111 21 22 3345566666 788 799999999996543
No 71
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=88.41 E-value=0.23 Score=57.09 Aligned_cols=54 Identities=19% Similarity=-0.114 Sum_probs=33.4
Q ss_pred cceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecC--ccccccCCC-cCCh
Q 039882 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNS--EKMSKSTGN-FRTL 784 (1142)
Q Consensus 727 ~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G--~KMSKS~GN-vI~p 784 (1142)
+|+...|.||.... ..+. -.+-.-..+-|. .+++.++. ++| .|||||.+| .|.+
T Consensus 208 a~~vpvG~DQ~~hl-~l~R--dla~r~n~~~p~-~l~~~~l~gLdG~~~KMSKS~~ns~I~L 265 (392)
T 3jxe_A 208 RCLIPAAIDQDPYW-RLQR--DFAESLGYYKTA-ALHSKFVPSLTSLSGKMSASKPETAIYL 265 (392)
T ss_dssp CEEEEEEGGGHHHH-HHHH--HHTGGGTSCCCE-EEEECCCCCSSCSSSCCCTTSGGGCCBT
T ss_pred CceeecccchHHHH-HHHH--HHHHHcCCCCCe-eeecccccCCCCCccccccCCCCCeeeC
Confidence 78889999998744 2222 111111113333 44567766 788 599999999 7754
No 72
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=88.34 E-value=0.56 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.049 Sum_probs=22.4
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHH
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAY 133 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry 133 (1142)
+|-|||.|||||+++....-.+||-
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~ 31 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR 31 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH
Confidence 5999999999999999988888773
No 73
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=88.27 E-value=0.26 Score=56.90 Aligned_cols=57 Identities=16% Similarity=-0.006 Sum_probs=35.3
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-ecC--ccccccC-CCcCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNS--EKMSKST-GNFRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~~G--~KMSKS~-GNvI~p~ 785 (1142)
|-+|+...|.||-.+. ..+.=...-+ +. +- -.++++-++. ++| .|||||. ||.|.+.
T Consensus 242 ~~a~lvpvG~DQ~~~i-~l~Rdla~r~-~~-~~-p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~ 302 (406)
T 3tze_A 242 GAMCLVPAAVDQDPFF-RLARDKAKAL-GE-KK-PSSIYVSLLPDLKGVNRKMSASDPNSSIYLD 302 (406)
T ss_dssp TCEEEEEEEGGGHHHH-HHHHHHHHHH-TC-CC-CEEEEECCCCCTTSCCCCSSCSCGGGSCBTT
T ss_pred CCCeEEeeccchHHHH-HHHHHHHHHc-CC-CC-ceeeccCcccCCCCCCcCCCCCCCCCcccCC
Confidence 4578899999998754 3332111111 21 22 2344566666 788 6999999 6888654
No 74
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=88.10 E-value=0.25 Score=56.12 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=34.6
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEe-e-cC-ccccccC-CCcCChH
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-L-NS-EKMSKST-GNFRTLK 785 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl-~-~G-~KMSKS~-GNvI~p~ 785 (1142)
-+|+.+.|.||..+. ..+.=...- ++ ..+| .++.+.++. . +| .|||||. ||.|+..
T Consensus 186 ~~~~~~~G~DQ~~~i-~l~Rdia~r-~~-~~~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~ 245 (348)
T 2j5b_A 186 GIDICQLGIDQRKVN-MLAIEYAND-RG-LKIP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMD 245 (348)
T ss_dssp CCSEECCBGGGHHHH-HHHHHHHHH-TT-CCCC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTT
T ss_pred CCcEEEeccChHHHH-HHHHHHHHH-hC-CCCc-eeecCccccCCCCcccccccCCCCCeEeec
Confidence 689999999998754 222211111 12 2333 345556665 5 67 7999999 5888643
No 75
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=87.73 E-value=0.28 Score=57.20 Aligned_cols=56 Identities=18% Similarity=-0.047 Sum_probs=35.0
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEe-ecC--ccccccCCC-cCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIM-LNS--EKMSKSTGN-FRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl-~~G--~KMSKS~GN-vI~p~ 785 (1142)
|-+++...|.||..+. ..+. -.....+ +-|. ++++-++. .+| .|||||.|| .|++.
T Consensus 255 ~~~~lVpvG~DQ~~~i-~l~R---dla~r~~~~~P~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~ 315 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYF-RMTR---DVAPRIGYPKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLT 315 (437)
T ss_dssp CCEEEEEEEGGGHHHH-HHHH---HHGGGGTCCCCE-EEEECCCEETTEEEEECCTTSSSSCCBTT
T ss_pred CCceEEEeehhhHHHH-HHHH---HHHHHhCCCCce-EeecccccCCCCCccccCCCCCCCeeecc
Confidence 5567777899998754 2221 1111111 3333 35666666 788 899999999 78754
No 76
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=86.92 E-value=0.43 Score=60.61 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHcCCeeeeec-----c-----------CccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCce
Q 039882 550 DAKPLIRSKLIETGEAIMYSE-----P-----------EKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNL 613 (1142)
Q Consensus 550 ea~~~I~~~L~~~g~l~~~~e-----~-----------~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~ 613 (1142)
++-..+...|.++|++..... + ....|+|||.+++.+-.+|||++++ ++++++++.++.+.-
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~--~y~~~Ll~~l~~~~~ 231 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKIT--AYADELLNDLDKLDH 231 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGG--GGHHHHHHHGGGCTT
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeec--hhHHHHHHHHhhccc
Confidence 345567778888888753211 1 1245899999999999999999996 699999999998876
Q ss_pred eCchhhhhHHHhhh
Q 039882 614 YHDENRHGFEHTLG 627 (1142)
Q Consensus 614 ~P~~~r~~~~~~i~ 627 (1142)
+|+.++..-.+||.
T Consensus 232 wp~~v~~~~~~wig 245 (880)
T 4arc_A 232 WPDTVKTMQRNWIG 245 (880)
T ss_dssp SCHHHHHHHHHHHC
T ss_pred ccHHHHHHHHhhhc
Confidence 89989888888875
No 77
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=86.86 E-value=0.3 Score=56.18 Aligned_cols=53 Identities=17% Similarity=-0.023 Sum_probs=21.7
Q ss_pred ceEEeecccchhhHHHHHHHHHHHhcCCCCC-cEEEEeeEEe-ecC--ccccccCCC-cCChH
Q 039882 728 DLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-RGFRCNGHIM-LNS--EKMSKSTGN-FRTLK 785 (1142)
Q Consensus 728 Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~P-k~v~~hG~vl-~~G--~KMSKS~GN-vI~p~ 785 (1142)
.+...|.||-.+. ..+. -.+- .--+| -.++++.++. .+| .|||||.+| .|+..
T Consensus 222 ~lvp~G~DQ~~~i-~l~R--dla~--r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~ 279 (393)
T 3hv0_A 222 CLVPHAIDQDPYF-RMVR--DVAP--RLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVN 279 (393)
T ss_dssp EEEEEEGGGHHHH-HHHH--HHTG--GGTCCCCEEEEECCCCC-------------CCCCBTT
T ss_pred eecccccchHHHH-HHHH--HHHH--HcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEecc
Confidence 3568999998754 2222 1111 11122 3445566666 788 799999998 67643
No 78
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=86.85 E-value=0.3 Score=55.96 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHh-cC------C-CCCcEEEEeeEEe-ecC------------------cccccc
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIM-SQ------R-HWPRGFRCNGHIM-LNS------------------EKMSKS 777 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~-~~------~-~~Pk~v~~hG~vl-~~G------------------~KMSKS 777 (1142)
|-+|+.+.|.||...+ ..+. -.+-. +. + .++..++++.++. .+| +|||||
T Consensus 179 ~~~~~vp~G~DQ~~~i-~l~r--dla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS 255 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAH-VIAI--EVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKS 255 (375)
T ss_dssp TTCSEEEEEGGGHHHH-HHHH--HHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGS
T ss_pred hCCCeecccchHHHHH-HHHH--HHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCC
Confidence 6789999999999644 3222 11111 11 0 1122344555665 677 899999
Q ss_pred C-CCcCChHH
Q 039882 778 T-GNFRTLKQ 786 (1142)
Q Consensus 778 ~-GNvI~p~~ 786 (1142)
. +|.|+..|
T Consensus 256 ~~~~~I~L~d 265 (375)
T 2cyc_A 256 KPYSAVFIHD 265 (375)
T ss_dssp CGGGSCBTTC
T ss_pred CCCCeeccCC
Confidence 9 78887654
No 79
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=86.73 E-value=1.5 Score=51.79 Aligned_cols=38 Identities=26% Similarity=0.113 Sum_probs=27.6
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+..=+ +|-|||.|||||+++....-.+||- ..|.-++.
T Consensus 26 v~~RF-APsPtG~LHiG~~rtal~n~l~Ar~--~~G~filR 63 (488)
T 3afh_A 26 VRVRF-APSPTGHLHVGGARTALFNWMFARK--EGGKFILR 63 (488)
T ss_dssp CEEEE-CCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEEC
T ss_pred ceEEE-CCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 33444 4999999999999999988777774 34544443
No 80
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=86.55 E-value=1.9 Score=51.13 Aligned_cols=38 Identities=21% Similarity=0.022 Sum_probs=28.9
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceee
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~ 143 (1142)
+..=+ +|-|||.|||||+++....-.+||- ..|.-++.
T Consensus 7 vr~RF-APsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLR 44 (498)
T 2ja2_A 7 VRVRF-CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFR 44 (498)
T ss_dssp CEEEE-CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEEC
T ss_pred eeEEE-CcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 33334 4899999999999999999888884 45655554
No 81
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=86.23 E-value=0.21 Score=56.37 Aligned_cols=59 Identities=32% Similarity=0.310 Sum_probs=35.9
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcC--C--CCCcEEEE--eeEEe-e-cC-ccccccC---CCcCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQ--R--HWPRGFRC--NGHIM-L-NS-EKMSKST---GNFRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~--~--~~Pk~v~~--hG~vl-~-~G-~KMSKS~---GNvI~p 784 (1142)
|-+|+...|.||...+ ..+.=...- .++. . +.|..++. +.++. + +| +|||||. ||.|..
T Consensus 142 ~~ad~vpvG~DQ~~hl-el~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L 215 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHL-ELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITL 215 (341)
T ss_dssp TTCSEECCCGGGHHHH-HHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBT
T ss_pred cCCCEEEeccchHHHH-HHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeec
Confidence 5689999999999754 333211111 1331 2 34555554 34554 4 67 6999999 788864
No 82
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=85.71 E-value=0.4 Score=56.58 Aligned_cols=56 Identities=18% Similarity=-0.047 Sum_probs=34.9
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCC-CCCcEEEEeeEEe-ecC--ccccccCCC-cCChH
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIM-LNS--EKMSKSTGN-FRTLK 785 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~-~~Pk~v~~hG~vl-~~G--~KMSKS~GN-vI~p~ 785 (1142)
|-+++...|.||..+. ..+. -.....+ +-|. ++++-++. .+| .|||||.|| .|++.
T Consensus 302 ~~~~~VpvG~DQ~~~i-~l~R---dla~r~~~~~p~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~ 362 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYF-RMTR---DVAPRIGYPKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLT 362 (477)
T ss_dssp CCEEEEEEEGGGHHHH-HHHH---HHGGGGTCCCCE-EEEECCCEETTEEEEECCTTSTTCCCBTT
T ss_pred CCceeEeccccHHHHH-HHHH---HHHHHhCCCCce-eeecccccCCCCCccccCCCCCCCceeec
Confidence 4567777899998744 2222 1111111 3333 35566666 789 899999999 78754
No 83
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=84.99 E-value=0.49 Score=58.41 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=35.5
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCc-EEEEeeEEe-e-cC-ccccccCC-CcCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPR-GFRCNGHIM-L-NS-EKMSKSTG-NFRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk-~v~~hG~vl-~-~G-~KMSKS~G-NvI~p 784 (1142)
|-+|+.+.|.||...+ ..+.=...- ++. . ++ .++++.++. . +| +|||||.+ |.|+.
T Consensus 182 ~~ad~vpvG~DQ~~~l-~l~Rdla~r-~n~-~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 182 LKADICQLGLDQRKVN-MLAREYCDL-IGR-K-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp TTCSEECCBGGGHHHH-HHHHHHHHH-TTC-C-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred hCCCEEeccccHHHHH-HHHHHHHHH-hCC-C-CCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 5789999999998744 333211111 222 1 23 355667766 5 88 49999998 67764
No 84
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=84.07 E-value=0.7 Score=56.01 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=46.7
Q ss_pred CcceEEeecccchhhHHHHHHHHHHHhcCC--CCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHH-cChhhhhhhhh
Q 039882 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLA 801 (1142)
Q Consensus 726 P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~--~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~-yGaDalRl~la 801 (1142)
-.+..+-|.|++.+-- .+.++...- +.| .+..+++++ .+|+||||+.|| ++..++.+. |-++++|-|++
T Consensus 315 githvirG~D~~~~t~-----~q~~l~~alg~~~P-~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~ 387 (592)
T 3al0_C 315 RISHVFRGEDHLSNTP-----KQLMIYEAFGWEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLA 387 (592)
T ss_dssp TCSBCCEEGGGGGGHH-----HHHHHHTTTTCCCC-BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHT
T ss_pred CCCeEEEchhhHhCHH-----HHHHHHHHhCCCCC-eEEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHH
Confidence 3445566888876432 122222211 223 233445555 699999999999 578888874 88999999998
Q ss_pred ccC
Q 039882 802 DAG 804 (1142)
Q Consensus 802 ~~~ 804 (1142)
..+
T Consensus 388 ~lG 390 (592)
T 3al0_C 388 LLG 390 (592)
T ss_dssp TTT
T ss_pred HhC
Confidence 764
No 85
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=81.29 E-value=0.63 Score=54.24 Aligned_cols=50 Identities=22% Similarity=0.150 Sum_probs=28.8
Q ss_pred eEEeecccchhhHHHHHHHHHHHhcCCCCC-cEEEEeeEEe-ecCc--cccccCCC-cCC
Q 039882 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-RGFRCNGHIM-LNSE--KMSKSTGN-FRT 783 (1142)
Q Consensus 729 l~~~G~D~ir~hl~~~l~~~~al~~~~~~P-k~v~~hG~vl-~~G~--KMSKS~GN-vI~ 783 (1142)
+...|.||...+ ..+. -.+- .--+| ..++.+.++. ++|. |||||.+| .|.
T Consensus 290 ~VPvG~DQ~~hl-el~R--dia~--rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 290 LIASGIEQDPYF-RLAR--DLAP--RMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEEECTTTHHHH-HHHH--HHTT--TTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCB
T ss_pred eeeeecchHHHH-HHHH--HHHH--HhCCCCCeeecCCcccCCCCCCCccCCCCCCCeee
Confidence 677899999754 2221 1111 11123 2344455555 6775 99999998 554
No 86
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=80.52 E-value=0.7 Score=52.19 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcC-CCCCcEEEE-e-eEEe-e-cC-ccccccCC---CcCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQ-RHWPRGFRC-N-GHIM-L-NS-EKMSKSTG---NFRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~-~~~Pk~v~~-h-G~vl-~-~G-~KMSKS~G---NvI~p 784 (1142)
|-+|+...|.||...+ ..+.=...- .++. -+.|..++. | .++. + +| +|||||.+ |.|..
T Consensus 151 ~~ad~vpvG~DQ~~hl-eltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L 221 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHL-ELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIEL 221 (346)
T ss_dssp TTCSEECCCGGGHHHH-HHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred hCceEEEeccchHHHH-HHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecC
Confidence 5689999999998744 333211111 1221 134455543 2 2344 4 77 59999997 67754
No 87
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=76.98 E-value=1.1 Score=51.42 Aligned_cols=59 Identities=29% Similarity=0.249 Sum_probs=33.9
Q ss_pred CCcceEEeecccchhhHHHHHHHHHH---HhcC-CCCCcEEEE--eeEEe-e-cC-ccccccC---CCcCCh
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTA---IMSQ-RHWPRGFRC--NGHIM-L-NS-EKMSKST---GNFRTL 784 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~a---l~~~-~~~Pk~v~~--hG~vl-~-~G-~KMSKS~---GNvI~p 784 (1142)
|-+|+...|.||...+ -.+.=...- .++. -+.|..++. +.++. + +| +|||||. ||.|..
T Consensus 170 ~~ad~vPvG~DQ~~hl-eltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L 240 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHL-ELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITL 240 (388)
T ss_dssp TTCCEECCCSSCHHHH-HHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBT
T ss_pred hCCCEEEechhHHHHH-HHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeec
Confidence 6799999999999744 333211111 1121 123444432 23343 3 44 7999999 899864
No 88
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=75.77 E-value=1.7 Score=48.06 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCch--hHHHHHHHHHHHHHcCCC
Q 039882 109 FPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMP--IKASADKLAREIKQFGNP 171 (1142)
Q Consensus 109 pPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~GlP--Ie~~a~k~~~e~~~~g~~ 171 (1142)
+|.|||.|||||+++.+.. |...+++++.|..=++.+--+ ++..++.+.+.++.+|+.
T Consensus 11 APsPtG~LHiG~~rtal~n-----~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~ 70 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGS-----YLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLH 70 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHH-----HHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCC
T ss_pred CcCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCC
Confidence 5899999999999998844 444445566666656555433 122233445555556654
No 89
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=74.72 E-value=2.2 Score=48.63 Aligned_cols=58 Identities=19% Similarity=0.083 Sum_probs=33.1
Q ss_pred CCcceEEeecccchhhHHHHHHHHHHHhcCCCCCc-EEEEeeEEe-ecCccccccCCC-cCC
Q 039882 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPR-GFRCNGHIM-LNSEKMSKSTGN-FRT 783 (1142)
Q Consensus 725 ~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk-~v~~hG~vl-~~G~KMSKS~GN-vI~ 783 (1142)
|-+.+..-|.||.. ||-.+.=...-+...-.+|+ ..+.+-++. .+|.|||||..| .|.
T Consensus 207 y~a~~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~ 267 (372)
T 3a04_A 207 YRHVVVPVGADQDP-HLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIF 267 (372)
T ss_dssp CCCEEEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCB
T ss_pred ccceecccchhhHH-HHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccc
Confidence 45567888999987 44333322221211112332 344455554 799999999855 564
No 90
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=73.20 E-value=0.69 Score=51.82 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM 152 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~Gl 152 (1142)
|+|.|||||.+..+.. +.++++ |+++.+..| |-|++
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~ 47 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAM 47 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHT
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeee
Confidence 5789999998864433 556666 998877665 44443
No 91
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=72.58 E-value=2.3 Score=54.18 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHcCCeeeee-----cc-----------Ccccccc-CCCeEEEcccCccceecCchHHHHHHHHHHhcCc
Q 039882 550 DAKPLIRSKLIETGEAIMYS-----EP-----------EKRVMSR-SGDECVVALTDQWYITYGEEEWKRLATECLNSMN 612 (1142)
Q Consensus 550 ea~~~I~~~L~~~g~l~~~~-----e~-----------~~~v~~R-sg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~ 612 (1142)
++-..+...|.++|++.... .+ ....|+| ||.+++.+-.+|||++++ ++.+++++.++...
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~--~~~~~L~~~l~~~~ 211 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRIT--AYAERLLKDLEGLN 211 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGG--GGHHHHHHTTTTCB
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecc--hhHHHHHHHhhhcC
Confidence 44567888899999875311 11 1345789 999999999999999996 68889999888877
Q ss_pred eeCchhhhhHHHhhh
Q 039882 613 LYHDENRHGFEHTLG 627 (1142)
Q Consensus 613 ~~P~~~r~~~~~~i~ 627 (1142)
.|+.+++...+||.
T Consensus 212 -~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 212 -WPEKVKAMQRAWIG 225 (878)
T ss_dssp -SCHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHhc
Confidence 89988888777774
No 92
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=65.31 E-value=4.4 Score=46.43 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=28.1
Q ss_pred cEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccC
Q 039882 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTG 151 (1142)
Q Consensus 102 kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~G 151 (1142)
+|++..|. -|||.|||||.....+ ..+++.-.|..|.+..| |-|+
T Consensus 73 p~~i~sG~-~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha 117 (392)
T 3jxe_A 73 GFFLYTGR-GPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEK 117 (392)
T ss_dssp CCEEEEEE-CCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHH
T ss_pred CeEEEecc-CCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHH
Confidence 44555553 3669999999886542 23345445888877666 4443
No 93
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=62.67 E-value=5 Score=46.08 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=22.3
Q ss_pred CCCCc-CchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGY-LHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~-LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|||. |||||.+ .+ -.+.++++ .|+++.+..|
T Consensus 72 dPTg~sLHlGhlv-~l--~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 72 DPTAPSLHVGHLL-PL--MPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCCSSSCBGGGHH-HH--HHHHHHHH-HTCEEEEEEC
T ss_pred cCCCCCccHHHHH-HH--HHHHHHHH-cCCcEEEEEc
Confidence 45798 9999987 22 23556665 4898887665
No 94
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=61.84 E-value=7.8 Score=43.28 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=36.5
Q ss_pred EEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecc-cC-----CccCchhHH--HHHHHHHHHHHcCCCC
Q 039882 104 FGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPF-GF-----HCTGMPIKA--SADKLAREIKQFGNPP 172 (1142)
Q Consensus 104 ~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~-G~-----D~~GlPIe~--~a~k~~~e~~~~g~~~ 172 (1142)
.+..|. -|||.||+||.. .+ -.+.+++. .|+++.+.. +| | .|-|-+. .+..+...+..+|.+|
T Consensus 34 ~vy~G~-~PTg~lHlG~l~-~l--~~~~~lq~-~g~~~~~~i~D~~a~~~d-~~~~~~i~~~~~~~~~~~~a~Gldp 104 (323)
T 2cyb_A 34 RAYVGY-EPSGEIHLGHMM-TV--QKLMDLQE-AGFEIIVLLADIHAYLNE-KGTFEEIAEVADYNKKVFIALGLDE 104 (323)
T ss_dssp EEEEEE-CCCSCCBHHHHH-HH--HHHHHHHH-TTCEEEEEECHHHHHHTT-CCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred EEEECc-CCCCcchHHHHH-HH--HHHHHHHH-CCCcEEEEECCceeEcCC-CCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 344443 478999999953 22 24455554 388777666 44 4 5555432 2334455566788764
No 95
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=61.71 E-value=6.1 Score=45.45 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 113 NGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 113 nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
||.|||||.+.... ..++++ .|+++.+..|
T Consensus 49 TG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 49 TGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp CSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 89999999875543 455555 7888876655
No 96
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=60.86 E-value=4.6 Score=46.08 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
|||.|||||.+.... ..++++ .|+++.+..|
T Consensus 44 PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 44 TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 689999999876543 555555 7888876655
No 97
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=53.65 E-value=23 Score=41.69 Aligned_cols=37 Identities=32% Similarity=0.276 Sum_probs=27.9
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCcee
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVL 142 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl 142 (1142)
...=+ +|.|||.|||||+++......++|.. .|.-++
T Consensus 26 v~~RF-APSPTG~lHiG~~rtal~n~l~Ar~~--~G~fil 62 (490)
T 4g6z_A 26 VRTRF-APSPTGFIHLGNIRSALYPWAFARKM--KGTFVL 62 (490)
T ss_dssp CEEEE-CCCCCSCCBHHHHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceEEe-CCCCCCCccHHHHHHHHHHHHHHHhc--CCeEEE
Confidence 33344 49999999999999999988888852 454444
No 98
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=51.83 E-value=4.8 Score=45.93 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=23.4
Q ss_pred CCCCcCchhhhhhhhHHHH-HHHHHHHcCCceeecccCCccCc
Q 039882 111 YMNGYLHLGHAFSFSKLEF-AAAYHRLKGANVLLPFGFHCTGM 152 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~-i~Ry~rm~G~~Vl~~~G~D~~Gl 152 (1142)
-|+|.|||||. ++.=+ +.+++. .|+.|.+..| |-|++
T Consensus 64 ~PTg~lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 101 (373)
T 3vgj_A 64 EPSGRMHIAQG---LLKSIIVNKLTS-NGCTFIFWIA-DWFAH 101 (373)
T ss_dssp CCCSSCBHHHH---HHHHHHHHHHHT-TTCEEEEEEC-HHHHH
T ss_pred CCCCCceehhh---HHHHHHHHHHHH-CCCcEEEEEe-cceeE
Confidence 35789999993 33322 455554 4898877766 44544
No 99
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=51.22 E-value=6 Score=44.28 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=20.6
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
|||.|||||.+..+.. +.+++. |+++.+..|
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia 40 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQH--EYNCYFCIV 40 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHTT--TSEEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHHHHc--CCcEEEEEe
Confidence 4699999998865422 223443 888876655
No 100
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=50.08 E-value=8.3 Score=43.50 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=21.5
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|||.|||||.+.. --.+.++++ .|+++.+..|
T Consensus 48 ~PTg~lHlGhyl~~--l~~~~~lQ~-~G~~~~~~i~ 80 (348)
T 2j5b_A 48 EPSGRIHIAQALIT--VMNTNNMIE-CGGQMIIYIA 80 (348)
T ss_dssp CCCSSCBHHHHHHH--HHHHHHHHH-TTEEEEEEEC
T ss_pred CCCCCCchhHHHHH--HHHHHHHHH-cCCcEEEEec
Confidence 45699999994422 234556665 4888876654
No 101
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=47.28 E-value=11 Score=42.95 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=26.7
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
++|+|.+|. -|||.|||||.+.. ++ .++..-.|++|.|..+
T Consensus 69 k~~~v~sG~-~PTG~lHLGhyv~~-~~---~~~lq~~~~~~~~~Ia 109 (372)
T 3a04_A 69 ERVAVLTGF-MPSGKFHFGHKLTV-DQ---LIYLQKNGFKVFVAIA 109 (372)
T ss_dssp CCCEEEEEE-CCCSCCBHHHHHHH-HH---HHHHHHTTCEEEEEEC
T ss_pred CCCEEEeCc-CCCcHhHHHHHHHH-HH---HHHHHhCCCeEEEEEe
Confidence 456666663 57999999998842 21 3333336999987654
No 102
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=47.13 E-value=8.6 Score=42.73 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=20.8
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 113 NGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 113 nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+|.||||| +..+ -.+.+++. .|+++.+..|
T Consensus 38 Tg~lHlGh-l~~l--~~~~~lQ~-~g~~~~~~i~ 67 (314)
T 2zp1_A 38 SGKIHLGH-YLQI--KKMIDLQN-AGFDIIILLA 67 (314)
T ss_dssp CSSCBHHH-HHHH--HHHHHHHH-TTEEEEEEEC
T ss_pred CCCcchhh-HHHH--HHHHHHHH-CCCCEEEEEe
Confidence 79999999 5333 34555554 4888887764
No 103
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=46.20 E-value=10 Score=42.32 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCCc-CchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGY-LHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~-LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+|. |||||.+ . --.+.+++. .|+++.+..|
T Consensus 41 ~PTg~slHlGh~l-~--l~~~~~lQ~-~g~~~~~~i~ 73 (322)
T 2yxn_A 41 DPTADSLHLGHLV-P--LLCLKRFQQ-AGHKPVALVG 73 (322)
T ss_dssp CCSSSSCBHHHHH-H--HHHHHHHHH-TTCEEEEEEC
T ss_pred cCCCCcccHHHHH-H--HHHHHHHHH-cCCcEEEEEc
Confidence 45788 9999976 2 234555554 4888877665
No 104
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=45.74 E-value=9.1 Score=42.98 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=20.5
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcC-Cceeeccc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKG-ANVLLPFG 146 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G-~~Vl~~~G 146 (1142)
|||.|||||.+... --+.+++. .| ++|.+..|
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~Ia 42 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIV 42 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEEC
T ss_pred CCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEe
Confidence 46899999988543 22344554 36 77766554
No 105
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=45.21 E-value=11 Score=42.81 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
|||.||||| +..+ -.+.+++. .|+++.+..|
T Consensus 44 PTg~lHlG~-l~~l--~~~~~lQ~-~G~~~~~~ia 74 (364)
T 2cya_A 44 PSGVAHIGW-LVWM--YKVKDLVE-AGVDFSVLEA 74 (364)
T ss_dssp CCSSCBTHH-HHHH--HHHHHHHH-TTCEEEEEEC
T ss_pred CCCCccHhH-HHHH--HHHHHHHH-CCCCEEEEEe
Confidence 479999999 5333 33555554 4898877666
No 106
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=44.13 E-value=11 Score=42.60 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=21.8
Q ss_pred CCCCc-CchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGY-LHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~-LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+|. ||||| +..++ .+.+++. .|+++.+..|
T Consensus 54 ~PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 54 DPTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVG 86 (356)
T ss_dssp CCSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred cCCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEc
Confidence 46796 99999 43333 3666665 5899887665
No 107
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=43.68 E-value=12 Score=46.15 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=27.8
Q ss_pred EEEeCCCCCCCCcCchhhhhhhhHHHH-HHHHHHHcCCceeecccCCccCc
Q 039882 103 FFGNFPFPYMNGYLHLGHAFSFSKLEF-AAAYHRLKGANVLLPFGFHCTGM 152 (1142)
Q Consensus 103 f~i~~ppPy~nG~LHiGHa~~~~~~D~-i~Ry~rm~G~~Vl~~~G~D~~Gl 152 (1142)
+.+..|. -|||.|||||. ++.-+ +.+++. .|++|.+..| |-|++
T Consensus 41 ~~vy~G~-~PTg~lHLG~~---v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 41 IRCYDGF-EPSGRMHIAQG---IFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp EEEEEEE-CCCSCCBHHHH---HHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred ceEEeee-cCCCcchhHhh---HHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 4444442 56889999993 33322 455654 5998877766 66665
No 108
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=43.14 E-value=12 Score=42.62 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=21.8
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
=|||.|||||.+..+ -.+.+++. .|+++.+..|
T Consensus 41 ~PTg~lHlG~yl~~l--~~~~~lQ~-~G~~~~~~ia 73 (375)
T 2cyc_A 41 EISGYIHLGTGLMAG--AKIADFQK-AGIKTRVFLA 73 (375)
T ss_dssp CCCSCCBHHHHHHHH--HHHHHHHH-TTCBCEEEEC
T ss_pred CCCCCcCchHHHHHH--HHHHHHHH-CCCcEEEEec
Confidence 356899999955322 34556665 5888876554
No 109
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=42.07 E-value=8.8 Score=43.30 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=20.5
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
|||.|||||.+..+.+ +.+++. |+++.+..|
T Consensus 13 PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia 43 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA 43 (348)
T ss_dssp CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc
Confidence 5799999998865522 335554 777765554
No 110
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=41.87 E-value=14 Score=41.44 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 112 MNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 112 ~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
|||.|||||.+.... -+.+++. .|++|.+..|
T Consensus 21 PTG~lHLGn~~g~l~--~~~~lQ~-~G~~~~~~Ia 52 (340)
T 2g36_A 21 PTGKLHIGHLVGALE--NWVKLQE-EGNECFYFVA 52 (340)
T ss_dssp CCSSCBHHHHHTHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCcccHHhHHHHHH--HHHHHHH-CCCCEEEEEe
Confidence 568999999886432 3344443 5899887764
No 111
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=41.15 E-value=17 Score=42.73 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=28.1
Q ss_pred CcEEEeCCCCCCC-CcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMN-GYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~n-G~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++.+..|. -|+ |.|||||..... +..+++.--|.+|.+..|
T Consensus 154 ~~~~vy~G~-dPTag~LHLGh~v~~~---~~~~lQ~~~g~~~iilI~ 196 (477)
T 1r6t_A 154 KPFYLYTGR-GPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQMT 196 (477)
T ss_dssp CCEEEEEEE-CCCTTCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred CCcEEEEcc-cCCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEe
Confidence 456666664 467 899999998654 233556546888766655
No 112
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=40.96 E-value=15 Score=42.70 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=27.5
Q ss_pred cEEEeCCCCCCC-CcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 102 KFFGNFPFPYMN-GYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 102 kf~i~~ppPy~n-G~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
++.+..|. -|+ |.|||||..... ...+++.--|.++.+..|
T Consensus 102 ~~~vy~G~-dPTag~LHLGh~v~~~---~l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 102 PFFLYTGR-GPSSDSMHLGHMIPFV---FTKWLQEVFDVPLVIELT 143 (432)
T ss_dssp CCEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred CeEEEEee-cCCCCCccHHHHHHHH---HHHHHHHHcCCeEEEEEe
Confidence 45555553 457 899999998544 234566656888777776
No 113
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=40.94 E-value=14 Score=42.89 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=21.9
Q ss_pred CCCCc-CchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGY-LHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~-LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+|+ |||||.. .+. .+.+++. .|+++.+..|
T Consensus 40 dPTg~sLHLGhlv-~l~--~l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 40 DPTAPSLHAGHLV-PLL--TLRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CCSSSSCBGGGHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCCCCcCHHHHH-HHH--HHHHHHH-CCCcEEEEEc
Confidence 45785 9999943 332 3666664 5999988765
No 114
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=40.46 E-value=12 Score=42.19 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=29.8
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc-CCcc---CchhHH--HHHHHHHHHHHcCCCC
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG-FHCT---GMPIKA--SADKLAREIKQFGNPP 172 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G-~D~~---GlPIe~--~a~k~~~e~~~~g~~~ 172 (1142)
-|+|.|||||.+..+.+ +.+++ .|+++.|..+ ||.. |-|-+. .+..+...+...|.+|
T Consensus 23 ~PTG~lHLGh~vg~l~~--~~~lQ--~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp 86 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQ--WVQMQ--DDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDP 86 (346)
T ss_dssp CSCSCCBHHHHHHTHHH--HHTTT--TTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--hhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 46899999998754321 12233 4677765443 3322 334222 1222233344578764
No 115
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=40.28 E-value=17 Score=42.04 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCc-CchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGY-LHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~-LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+|. |||||... --.+.+++. .|+++.+..|
T Consensus 38 dPTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg 70 (419)
T 2ts1_A 38 DPTADSLHIGHLAT---ILTMRRFQQ-AGHRPIALVG 70 (419)
T ss_dssp CCSSSSCBGGGHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 35788 99999762 233556654 5999887765
No 116
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=40.06 E-value=14 Score=42.65 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCCc-CchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGY-LHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~-LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+|. |||||.+. --.+.+++. .|+++.+..|
T Consensus 40 dPTg~sLHlGh~v~---l~~~~~lQ~-~G~~~~~lIg 72 (420)
T 1jil_A 40 DPTADSLHIGHLLP---FLTLRRFQE-HGHRPIVLIG 72 (420)
T ss_dssp CCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 45788 99999762 234556664 5999887765
No 117
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=39.85 E-value=20 Score=40.85 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=28.9
Q ss_pred CcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++.+..|. -|+|.|||||.... .+..+++..-|..|.+..|
T Consensus 81 ~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~ 122 (386)
T 3hzr_A 81 KPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFNIQVIIQIL 122 (386)
T ss_dssp CCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEEC
T ss_pred CCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeC
Confidence 456666664 67899999997754 3344566666888877744
No 118
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=39.82 E-value=18 Score=42.05 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=28.2
Q ss_pred CcEEEeCCCCCCC-CcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMN-GYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~n-G~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++.+..|. -|| |.|||||..... +..+++.--|.++.+..|
T Consensus 107 ~~~~vy~G~-dPTag~LHLGh~v~~~---~~~~lQ~~~G~~~iilIg 149 (437)
T 1r6u_A 107 KPFYLYTGR-GPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQMT 149 (437)
T ss_dssp CCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred CCcEEEEcc-cCCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEe
Confidence 456666664 467 899999998654 234566546888766665
No 119
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=36.34 E-value=18 Score=42.01 Aligned_cols=37 Identities=38% Similarity=0.520 Sum_probs=23.1
Q ss_pred CCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccCc
Q 039882 111 YMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM 152 (1142)
Q Consensus 111 y~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~Gl 152 (1142)
-||| .|||||... --.+.+++. .|+++.+..| |.||+
T Consensus 45 dPTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg-D~ta~ 82 (432)
T 1h3f_A 45 DPTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIG-DFTGM 82 (432)
T ss_dssp CTTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC-CCC--
T ss_pred cCCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEc-cceEE
Confidence 4577 599999872 334556654 4898877666 34443
No 120
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=35.35 E-value=13 Score=41.78 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=20.7
Q ss_pred CCCCcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 111 YMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 111 y~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
-|+|.|||||.+....+ +.+++. |+++.|..+
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia 45 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQD--DYDCQYCVV 45 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHHH--HSEEEEEEC
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--cCeEEEEEe
Confidence 46799999998865422 334554 577766544
No 121
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=34.41 E-value=14 Score=42.28 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=25.5
Q ss_pred EeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeecccCCccC
Q 039882 105 GNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTG 151 (1142)
Q Consensus 105 i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G~D~~G 151 (1142)
|.+|. -|||.|||||.+..+.+ ..+++ .|++|.|..+ |-|+
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hA 78 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHA 78 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHH
T ss_pred EEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-ccee
Confidence 55552 57899999998765432 22333 4898877654 4343
No 122
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=30.30 E-value=34 Score=39.81 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=28.5
Q ss_pred CcEEEeCCCCCCC-CcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMN-GYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~n-G~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
.+|.+..|. -|| |.|||||.... -...+++..-|..|.+..|
T Consensus 90 ~p~~vytG~-dPTagsLHLGH~v~~---~~l~~lQ~~~g~~v~I~Ig 132 (451)
T 3foc_A 90 HPIYIYTGR-GPSSGALHLGHLLPF---IFTKYLQDAFKCYVVIQIT 132 (451)
T ss_dssp CCEEEEEEE-CCCSSCCBHHHHHHH---HHHHHHHHHHTCEEEEEEC
T ss_pred CCeEEEecC-CCCCCCccHHHHHHH---HHHHHHHHccCceEEEEee
Confidence 456777774 567 89999997643 3445577766877777444
No 123
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=27.62 E-value=19 Score=40.62 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHHc-CCceeecc
Q 039882 113 NGYLHLGHAFSFSKLEFAAAYHRLK-GANVLLPF 145 (1142)
Q Consensus 113 nG~LHiGHa~~~~~~D~i~Ry~rm~-G~~Vl~~~ 145 (1142)
+|.|||||.+... ..+.+|| .+++.+..
T Consensus 32 TG~lHLGn~~g~l-----~~~~~lQ~~~~~~~~I 60 (351)
T 1yi8_B 32 TGALHLGHLAGSL-----QNRVRLQDEAELFVLL 60 (351)
T ss_dssp SSCCBHHHHHHTH-----HHHHHHTSSSEEEEEE
T ss_pred CCCccHHHHHHHH-----HHHHHHHHhCCeEEEE
Confidence 7999999988643 2333333 36665544
No 124
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=26.70 E-value=43 Score=38.31 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=28.8
Q ss_pred CcEEEeCCCCCCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
+++.+..|. -|+| .|||||.... .+..+++..-|..|.+..|
T Consensus 77 ~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~ 119 (395)
T 3i05_A 77 QPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMT 119 (395)
T ss_dssp CCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEc
Confidence 456666664 6788 7999998643 3455677766777777644
No 125
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=26.35 E-value=46 Score=38.17 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=28.1
Q ss_pred CcEEEeCCCCCCCC-cCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 101 EKFFGNFPFPYMNG-YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 101 ~kf~i~~ppPy~nG-~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
++|.+..|. -||| .|||||.... .+..+++..-|..+.+..|
T Consensus 100 ~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia 142 (406)
T 3tze_A 100 RPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQIT 142 (406)
T ss_dssp CCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEEee
Confidence 456676664 6788 8999997754 3444566665777766444
No 126
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=24.40 E-value=40 Score=38.54 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=26.7
Q ss_pred cEEEeCCCCCCC-CcCchhhhhhhhHHHHHHHHHHHcCCceeeccc
Q 039882 102 KFFGNFPFPYMN-GYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146 (1142)
Q Consensus 102 kf~i~~ppPy~n-G~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~~G 146 (1142)
++.+..|. -|+ |.|||||..... ...++++.-|..|.+..|
T Consensus 74 ~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~ 115 (393)
T 3hv0_A 74 LFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT 115 (393)
T ss_dssp CCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC
T ss_pred CeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc
Confidence 45555553 467 789999965433 456677776777766443
Done!