RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 039882
(1142 letters)
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 2277 bits (5902), Expect = 0.0
Identities = 875/1087 (80%), Positives = 972/1087 (89%), Gaps = 4/1087 (0%)
Query: 55 MATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNG 114
M E GKS ARRDRLLEIE V WWEE VF AE G+ PP P GEKFFGNFP+PYMNG
Sbjct: 1 MMAEGGKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKP--GEKFFGNFPYPYMNG 58
Query: 115 YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 174
LHLGHAFS SKLEFAAAYHRL+GANVLLPF FHCTGMPIKASADKLAREI+Q+GNPPVF
Sbjct: 59 LLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVF 118
Query: 175 LKE-AEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEIS 233
+E ++ + +AE AP DKFK KKSKA AKSG Q YQWEIMRSFGL DSEI+
Sbjct: 119 PEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIA 178
Query: 234 EFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKII 293
+FQ+P WL++FPPLAKEDLKAFGLGCDWRRSF+TT++NP++D+FV+WQ RKLK GKI+
Sbjct: 179 KFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIV 238
Query: 294 KDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAA 353
KD RYTIYSPLD QPCADHDRASGEGV PQ+Y LIKMEVL PFP K LEGKKV+LAAA
Sbjct: 239 KDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAA 298
Query: 354 TLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVEL 413
TLRPETMYGQTN WVLPDGKYGA+EI++T+V I+T RAALNLAYQNFS++P KPTCLVEL
Sbjct: 299 TLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVEL 358
Query: 414 TGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAF 473
TGYDLIGLPLKSPL+FNEVIYALPMLTILTDKGTG+VTSVPSD+PDDYMAL DLKAKPA
Sbjct: 359 TGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPAL 418
Query: 474 RAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGF 533
RAK+GVKDEWVLPFEV+PIINIPEFGDKSAE+VC DLKIKSQN+K+KLAEAKRLTYL+GF
Sbjct: 419 RAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGF 478
Query: 534 TEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYI 593
T+GTMLVG++AG+KVQ+AKPLI+ KLIE G+AI+YSEPEK+VMSRSGDECVVALTDQWY+
Sbjct: 479 TDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYL 538
Query: 594 TYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVE 653
TYGEEEWK+ A +CL+ MNLY DE RHGFEHTLGWLNQWACSRSFGLGTRIPWD QFL+E
Sbjct: 539 TYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIE 598
Query: 654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSI 713
SLSDSTIYMAYYTVAH+L GDMYG SI+P QMTDEVW+F+FCGGP P+SS+IP+ +
Sbjct: 599 SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSSDIPAEL 658
Query: 714 LNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEK 773
L +MKQEFEYWYPFDLRVSGKDLIQNHLTF IYNHTAI ++ HWPRGFRCNGH+MLNSEK
Sbjct: 659 LEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEK 718
Query: 774 MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEE 833
MSKSTGNF TL+QAIEEFSADATRF+LADAGDGVDDANFVF+TAN ILRLTKEIAWMEE
Sbjct: 719 MSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAILRLTKEIAWMEE 778
Query: 834 VLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYR 893
VLA ESSLRTGPPSTYADRVFENEINIA+ T+++Y+ MFREALK+GFYDLQAARDEYR
Sbjct: 779 VLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYR 838
Query: 894 LSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLI 953
LSCG+GG+NRDLVWRFMDVQTRLITPICPHYAE+VWR ILKK+GFAV AGWP G PDL
Sbjct: 839 LSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAGEPDLT 898
Query: 954 LKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAE 1013
LK ANKYLQDSIV RKLLQKQ+ GSKKA K GAPV TL E KL GL+YV E++DGWK E
Sbjct: 899 LKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGAPV-TLPEKKLAGLIYVAEKYDGWKEE 957
Query: 1014 CLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGP 1073
CLRILQSKFDS+SRTFAPD EILEAL+ SSVGQ +NFKQ QKLCMPF++FKKDEA A+GP
Sbjct: 958 CLRILQSKFDSQSRTFAPDAEILEALKESSVGQEANFKQVQKLCMPFVKFKKDEAIAVGP 1017
Query: 1074 QALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPG 1133
QALDLKLPF EIEVLQENL+LIKRQLGLEEVEILSA+DPDA++KAG+ +SLLKQNPPSPG
Sbjct: 1018 QALDLKLPFDEIEVLQENLELIKRQLGLEEVEILSASDPDAVAKAGAHASLLKQNPPSPG 1077
Query: 1134 NPTAIFL 1140
NP AIF+
Sbjct: 1078 NPVAIFV 1084
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic
family. The leucyl-tRNA synthetases belong to two
families so broadly different that they are represented
by separate models. This model includes both archaeal and
cytosolic eukaryotic leucyl-tRNA synthetases; the
eubacterial and mitochondrial forms differ so
substantially that some other tRNA ligases score higher
by this model than does any eubacterial LeuS [Protein
synthesis, tRNA aminoacylation].
Length = 938
Score = 803 bits (2076), Expect = 0.0
Identities = 367/1046 (35%), Positives = 539/1046 (51%), Gaps = 137/1046 (13%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
IE K WEE+++F A+P +R EKFF +PY+NG +H GH +F+ E +
Sbjct: 2 AIEKKWQKRWEEAHIFEADPDDR-------EKFFLTMAYPYLNGVMHAGHCRTFTIPEVS 54
Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAE 190
A + R+KG NVL P GFH TG PI A+ + R + + E P E
Sbjct: 55 ARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTI-------KNYTEVHAIPRE-- 105
Query: 191 DPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAK 250
E+ +F +PE + +F A+
Sbjct: 106 ----------------------------------------ELLKFTDPEYIVEYFSREAE 125
Query: 251 EDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCA 310
K+ G DWRRSF TT+ P++D F++WQM KLK +G I+K Y P D P
Sbjct: 126 SACKSMGYSIDWRRSFKTTD--PYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVE 183
Query: 311 DHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLP 370
DHD SGEGV +Y LIK E LE Y AATLRPET+YG TN WV P
Sbjct: 184 DHDLLSGEGVTIVEYILIKFE-----------LEDGAFYFVAATLRPETVYGVTNCWVNP 232
Query: 371 DGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFN 430
Y E+ I ++ A NL+YQ K + E+ G IG + +P+
Sbjct: 233 TITYVIAEVGGEK-WITSKEAFENLSYQK-----LKYKPIEEVPGKQFIGKKVHNPVVGP 286
Query: 431 EVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVI 490
EV LP + T KGTG+V SVP+ APDDY+AL DL P + G+K + E +
Sbjct: 287 EV-PILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEY---LGIKPVVI-DIEPV 341
Query: 491 PIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVG--DFAGKKV 548
P+I+ +GD A+ + + IKSQ +K+ L EA ++ Y + G M+ + G KV
Sbjct: 342 PLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKV 401
Query: 549 QDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVV-ALTDQWYITYGEEEWKRLATE 606
+AK +++ LI+ G A +MY E V+ R G +C+V + DQW++ Y +E WK LA E
Sbjct: 402 SEAKEKVKADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHE 461
Query: 607 CLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYT 666
CL M + +E ++ FE + WL WAC R +GLGTR+PWD ++L+ESLSDSTIYMAYYT
Sbjct: 462 CLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYT 521
Query: 667 VAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYP 726
+AH L+K QMTDE +++IF G +++NIP + ++++EFEYWYP
Sbjct: 522 IAHYLNKDY--------YGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYP 573
Query: 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQ 786
D R+SGKDLI NHLTF I++H AI ++ WPRG NG++ML +KMSKS GN TL+Q
Sbjct: 574 LDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQ 633
Query: 787 AIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPP 846
A+E+F AD R +ADA + V DA++ ILRL + + EE+ ES+L TG
Sbjct: 634 AVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEI-TKESNLETGEE 692
Query: 847 STYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLV 906
+++ DR E+ +N A++ T + +N+ R+A+K +DLQA D YR G ++D++
Sbjct: 693 TSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRR--GGVNHKDVL 750
Query: 907 WRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDS 964
R+++ +L+ P PH+AE +W + +GF A +P P D +++A +YL++
Sbjct: 751 ARYLETWIKLLAPFAPHFAEEMWE-EVGNEGFVSLAKFPEASEPAVDKEVEAAEEYLRN- 808
Query: 965 IVLMRKLLQ-KQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFD 1023
L+R + + +I SK V T + WK++CL+I+ F
Sbjct: 809 --LVRDIQEIAKIDASKPKR-----VYLYTSED-------------WKSQCLKIVAELFG 848
Query: 1024 SKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFG 1083
+ E + + + +K + K K +
Sbjct: 849 E---------DTGEDM-----KKVMEEPEERKRGKEVISLVKQIIKDEKKEDELQ---IS 891
Query: 1084 EIEVLQENLDLIKRQLGLEEVEILSA 1109
EIEVL+ IK+++G + SA
Sbjct: 892 EIEVLKAAARFIKKEVGALVIIEFSA 917
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 719 bits (1859), Expect = 0.0
Identities = 338/1014 (33%), Positives = 507/1014 (50%), Gaps = 149/1014 (14%)
Query: 116 LHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFL 175
LH+GH +++ + A Y R++G NVL P FH TG PI A+++AR G+P
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR-----GDPET-- 53
Query: 176 KEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEF 235
++ +KS +Y G+ + E+ +F
Sbjct: 54 ----------------------IELYKS------------LY--------GIPEEELEKF 71
Query: 236 QEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKD 295
++PE + +F AKED+K G DWRR F TT+ P + F++WQ RKLK G I+K
Sbjct: 72 KDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVKG 129
Query: 296 VRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATL 355
Y P D+ P DHD GE + +YTLIK E E + + L AATL
Sbjct: 130 SHPVRYCPNDNNPVGDHDLLDGEEPEIVEYTLIKFE------------ESEDLILPAATL 177
Query: 356 RPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFS-RIPKKPTCLVELT 414
RPET++G TN WV PD Y E+ + IV++ AA L++Q+ I + E+
Sbjct: 178 RPETIFGVTNLWVNPDATYVKAEVDG-EKWIVSKEAAEKLSFQDRDVEI------IEEIK 230
Query: 415 GYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFR 474
G +LIG +K+P++ EV LP + D GTG+V SVP+ AP DY+AL DLK
Sbjct: 231 GSELIGKKVKNPVTGKEVP-ILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNK--- 286
Query: 475 AKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFT 534
E + E IP+I + +G+ A+ V L IKSQ + +L EA + Y F
Sbjct: 287 -------ELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDP-ELEEATKEVYRAEFH 338
Query: 535 EGTML--VGDFAGKKVQDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVA-LTDQ 590
+G + G++AGK V++A+ I LIE G A IMY + V R G ECVV + DQ
Sbjct: 339 KGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQ 398
Query: 591 WYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQF 650
W+I Y + EWK LA + L++M + +E R FE+T+ WL AC+R GLGTR+PWD ++
Sbjct: 399 WFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEW 458
Query: 651 LVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCG----GPYPES 706
++ESLSDSTIYMAYYT+AH + + I+P Q+T E ++++F G +
Sbjct: 459 IIESLSDSTIYMAYYTIAHKIREYG--------IKPEQLTPEFFDYVFLGKGDPEEVSKK 510
Query: 707 SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGH 766
+ IP IL M++EF YWYP D R SGKDLI NHLTF I+NH AI + WPRG NG
Sbjct: 511 TGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGF 570
Query: 767 IMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTK 826
++L +KMSKS GN L++AIEE+ AD R L + + + DA++ + +L +
Sbjct: 571 VLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLER 630
Query: 827 EIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886
+E++ + + D+ + +N ++ T + +++ R+A++ FY+L
Sbjct: 631 FYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELL 686
Query: 887 AARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPT 946
Y G N ++ +++ RL+ P PH AE +W L +GF WP
Sbjct: 687 NDLRWYLRRV--GEANNKVLREVLEIWIRLLAPFTPHLAEELWH-KLGGEGFVSLEKWPE 743
Query: 947 YGTPDLILKSANKYLQDSIVLMRKLLQ--KQILGSKKANKKGAPVATLTEDKLKGLVYVN 1004
I ++ + + +++L++ ++IL K K K +YV
Sbjct: 744 PD-ESKI----DEEAELAEEYVKRLIEDIREILKVAKIKPK------------KVYIYVA 786
Query: 1005 EQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSV----GQASNFKQTQKLCMPF 1060
WK E L I D K I E +++ + + + QK+
Sbjct: 787 PD---WKYEVLEIAAENGDVKEA-------IKELMKDEELRKHGKEVAKL--AQKIVKEV 834
Query: 1061 LRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDA 1114
L+ K+ K I E EVL+E D ++++LG+ EVEI A DP
Sbjct: 835 LKLDKEVRKLIL-------KNIDEEEVLEEAKDFLEKELGV-EVEIYGADDPGK 880
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 435 bits (1121), Expect = e-137
Identities = 166/727 (22%), Positives = 260/727 (35%), Gaps = 96/727 (13%)
Query: 238 PEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVR 297
P KW + K+ LK+ G DWRR F T +P + ++QWQ KL G +
Sbjct: 98 PAKWTYYNIAYMKKQLKSLGFSIDWRREFATC--DPEYYKWIQWQFLKLYEKGLAYRKEA 155
Query: 298 YTIYSPLDDQPCADHDR------ASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLA 351
+ P+D A+ GE V+ ++ T ++ E
Sbjct: 156 PVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITD------YADELLDDLDK 209
Query: 352 AATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLV 411
ATL PET+ G W+ P Y + + + IV+ F T +V
Sbjct: 210 LATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLF-----GVTYVV 264
Query: 412 ELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKP 471
+ L+G + +P + L + KGTG+V SVP+ A D + L
Sbjct: 265 LAPEHPLVGKLVTNPQT------PLVAEFVDECKGTGVVESVPAHAEKDGVFL------- 311
Query: 472 AFRAKFGVKDEWVLPFEVIPIINIPEFGDKSA-ERVCTDLKIKSQNEKDKLAEAKRLTYL 530
G + E IP+ + V + + + +E+D L A + Y
Sbjct: 312 ------GGYAINPVNGEKIPVWIANYVLMEYGTGAV---MGVPAHDERD-LEFATK--YK 359
Query: 531 RGFTEGTMLVGDFAGKKVQ-DAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTD 589
+ M GKKV LI S G + E K V R G V
Sbjct: 360 LPIKKVIM-PEGTVGKKVYEGEGVLINSG----GLDGLDYEEAK-VKIRCG--LVKRGLG 411
Query: 590 QWYITYGEEEW-KRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGT--RIPW 646
QW++ Y +W K + + H E+ WL R GLGT +PW
Sbjct: 412 QWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPW 471
Query: 647 DPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES 706
D ++++ESL DST Y T+ + ++ IF G
Sbjct: 472 DEEWVIESLPDSTAYRETDTMDTFIDSS-------------WYYLRFFDPIFLGE----- 513
Query: 707 SNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRG-----F 761
L ++EF YWYP DL + G + HL + + H A+ + P+
Sbjct: 514 -------LPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL 566
Query: 762 RCNGHIML-NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTG 820
G ++ EKMSKS GN ++A+E++ AD R + A D +
Sbjct: 567 ITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA 626
Query: 821 ILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKT 880
L + ++E L T DR + V + ++
Sbjct: 627 RRFLQRVWNLVKEHLEKLVEELTK-EQGKEDRWLLHRTIKKVT---EDFEARQTFNTAIA 682
Query: 881 GFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAV 940
+L A +Y +R ++ ++ RL+ P PH AE +W + + GF
Sbjct: 683 ALMELLNALRKYL---RRTEGDRKVLREALETWVRLLAPFAPHIAEELWEELGNE-GFVS 738
Query: 941 KAGWPTY 947
A WP
Sbjct: 739 NAPWPEP 745
Score = 115 bits (289), Expect = 6e-26
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 68 RLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKL 127
EIE K WEE+ VF E + + EKF+ FPY +G LH+GH +++
Sbjct: 6 NPREIEEKWQKRWEEAKVF-----EADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIG 60
Query: 128 EFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 163
+ A Y R++G NVL P G+ G+P + +A K+
Sbjct: 61 DVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 229 bits (587), Expect = 1e-67
Identities = 76/233 (32%), Positives = 106/233 (45%), Gaps = 49/233 (21%)
Query: 586 ALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIP 645
L DQW++ Y E EWK + L ++ + +E R E+ +G CSR GT IP
Sbjct: 127 KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPIP 180
Query: 646 WDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPE 705
W +ESLSDST Y A YT AH L +
Sbjct: 181 W--TDTMESLSDSTWYYARYTDAHNLEQPYEG---------------------------- 210
Query: 706 SSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAI----MSQRHWPRGF 761
L ++EFEYWYP D+ + GK+ NHL + +NH A+ + P+G
Sbjct: 211 -------DLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGL 263
Query: 762 RCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVF 814
G ++L EKMSKS GN T +AI+++ ADA R + A DA+F +
Sbjct: 264 IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFDW 314
Score = 115 bits (291), Expect = 5e-28
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 36/163 (22%)
Query: 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 161
KF+ FPY +G LH+GH +++ + A Y R++G NVL P GF G+P + +A K+
Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60
Query: 162 AREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEI 221
R DP ++ KK K K Y W
Sbjct: 61 GR---------------------------DP---EDWTEYNIKKMKEQLKRMGFSYDWR- 89
Query: 222 MRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRR 264
R F D E +F + WL K +W +
Sbjct: 90 -REFTTCDPEYYKFTQ---WLFLKLYE-KGLAYKKEAPVNWCK 127
Score = 53.8 bits (130), Expect = 2e-07
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 236 QEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKD 295
++PE W + KE LK G DWRR F T +P + F QW KL G K
Sbjct: 62 RDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTC--DPEYYKFTQWLFLKLYEKGLAYKK 119
Query: 296 ---VRYTIY 301
V +
Sbjct: 120 EAPVNWCKL 128
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 143 bits (364), Expect = 3e-40
Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 812 FVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKN 871
F + AN+ ILRL + EE++ E L T+ DR + +N ++ T + Y+N
Sbjct: 1 FREEEANSAILRLERFYELAEELIETEGEL---EELTFIDRWLLSRLNRLIKETTEAYEN 57
Query: 872 YMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWR 930
FREALK G Y+LQ D YR GA G+N+DL+ RF++V TRL+ P PH AE +W
Sbjct: 58 MQFREALKEGLYELQNDLDWYRERGGA-GMNKDLLRRFIEVWTRLLAPFAPHLAEEIWH 115
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 103 bits (259), Expect = 5e-24
Identities = 51/233 (21%), Positives = 81/233 (34%), Gaps = 53/233 (22%)
Query: 581 DECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGL 640
V +T+QW+ ++K + L + + ++ E L L WA SR
Sbjct: 132 GTHPVRITEQWFFDM--PKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYW 189
Query: 641 GTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCG 700
GT +P D + + DS I
Sbjct: 190 GTPLPED---VFDVWFDSGIGPLGSLG--------------------------------- 213
Query: 701 GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRG 760
YPE K+ F+ YP D + GKD+++ F I A+ + P+
Sbjct: 214 --YPE-----------EKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGE-IPPKN 259
Query: 761 FRCNGHIMLN-SEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812
+G ++ +KMSKS GN +E++ ADA R+ L DD
Sbjct: 260 LLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312
Score = 65.9 bits (161), Expect = 3e-11
Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 62/202 (30%)
Query: 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 161
KF+ P PY NG LHLGHA + +F A Y R++G V G+ G+PI+ A++
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAER- 59
Query: 162 AREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEI 221
+K+ E EDP
Sbjct: 60 -------------KGGRKKKTIWIEEFREDP----------------------------- 77
Query: 222 MRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQW 281
++++ KED + G+ DW ++TTE P + V+
Sbjct: 78 -----------------KEFVEEMSGEHKEDFRRLGISYDWSDEYITTE--PEYSKAVEL 118
Query: 282 QMRKLKSMGKIIKDVRYTIYSP 303
+L G I + +
Sbjct: 119 IFSRLYEKGLIYRGTHPVRITE 140
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 87.4 bits (217), Expect = 2e-17
Identities = 125/591 (21%), Positives = 198/591 (33%), Gaps = 129/591 (21%)
Query: 250 KEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPC 309
+ K G+ DW R + T ++P ++ V +L G I + + +SP +
Sbjct: 116 RSQFKRLGVSGDWDREYFT--LDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTAL 173
Query: 310 ADHDRASGEGVQPQDYT--LIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAW 367
++ + V+ +D I + FP +GK L T P T+ G T
Sbjct: 174 SEAE------VEYKDVKGPSIHVA----FPLA----DGKGASLVIWTTTPWTLPGNTAVA 219
Query: 368 VLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPL 427
V P+ Y + T + A L Y+ + L + G +LIG P
Sbjct: 220 VNPEFNYVKIRV--TGEYYILAEALLKSLYKKKKEDGEI---LEDFRGKELIGKKYIHPF 274
Query: 428 SFNEVIYALPMLT---ILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWV 484
V +P++ + + GTG V P+ DDY G +
Sbjct: 275 ----VNREIPIIADDYVDMEFGTGAVHIAPAHGEDDYEV--------------GKRHN-- 314
Query: 485 LPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFA 544
+ IN + + E +F
Sbjct: 315 -----LEFINP-------------------------------VDDDGTYNEE---APEFQ 335
Query: 545 GKKVQDAKPLIRSKLIETG-----EAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEE 599
G K A+ I L E G E I +S P RSG + T QW++ +
Sbjct: 336 GLKRFKARKKIVELLTEKGLLLKIEPIEHSYP---HCWRSGTPIIYRATPQWFV--RMKN 390
Query: 600 WKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIP-WDPQFLVESLSDS 658
A + + + + + L + W SR G IP W + E
Sbjct: 391 LAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRG 450
Query: 659 TIYMAYYTVAHM---------LHK--GDMYGSTTGSIEPGQMTD--EVWEFIFCGGPYPE 705
++ VA LH+ D+ G G++E Q D + W F
Sbjct: 451 SL---KELVAGREEEEGIEAWLHRDAKDLLGKGAGTLE--QDEDVLDTW-F--------S 496
Query: 706 SSNIPSSIL---NRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFR 762
S + P S L EF+ ++P D+ + G D + I TA+ +
Sbjct: 497 SGSWPFSTLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVL- 555
Query: 763 CNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812
+G + KMSKS GN I+++ ADA R LA + D D NF
Sbjct: 556 VHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASS-DYGRDINF 605
Score = 56.6 bits (137), Expect = 6e-08
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 79 WWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKG 138
+W+E F P F + P G LH+GHA + + + Y R++G
Sbjct: 5 FWDEQGYFKKSLENGKGKP----SFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQG 60
Query: 139 ANVLLPFGFHCTGMPIKASAD-KLAREIKQ 167
+VL G+ G+P + + KL + K+
Sbjct: 61 FDVLWVPGWDHHGLPTEQKVEKKLGIKGKK 90
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 78.4 bits (194), Expect = 1e-14
Identities = 103/486 (21%), Positives = 164/486 (33%), Gaps = 109/486 (22%)
Query: 541 GDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMS-----RSGDECVVA--LTDQWYI 593
G+FAG +A+ I L E G + + E S R G + L+ QW++
Sbjct: 306 GEFAGLDRFEARKKIVEDLEEQG---LLVKIEPHKHSVGHCERCGT--PIEPLLSKQWFV 360
Query: 594 TYGEEEWKRLATECLNS--MNLYHDENRHGFEHTL-GWLNQ---WACSRSFGLGTRIP-W 646
E + A E + + + E W+ W SR G RIP W
Sbjct: 361 KV--LELAKKALEAVKDGKIKFVPER----MEKRYEDWMENIRDWCISRQLWWGHRIPVW 414
Query: 647 DPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGP---Y 703
Y G++ + E
Sbjct: 415 ------------------------------YCKECGNVVVAEEEPEDPAAAEKCPKEELE 444
Query: 704 PE--------SSNI-PSSILNRMKQ--EFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIM 752
+ SS++ P S L ++ + + +YP DL V+G D+I + I +
Sbjct: 445 QDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLT 504
Query: 753 SQRHWPRGFRCNGHIMLNS-------EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805
+ + + ++ KMSKS GN I+++ ADA RF+LA
Sbjct: 505 GEVPF-------KDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLAS 557
Query: 806 GVDDANFVFDTANTG------ILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEIN 859
D NF + T+ + + L + ADR + +N
Sbjct: 558 PGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDL--GPDDLDLLALSLADRWILSRLN 615
Query: 860 IAVEMTDQHYKNYMFREALKT-------GFYD--LQAARDEYRLSCGAGGLN--RDLVWR 908
V+ + NY F EA + F D L+ A+ RL G R ++
Sbjct: 616 ETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAK--PRLYGGEEEKRAARATLYY 673
Query: 909 FMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANK---YLQDSI 965
+D RL+ P P E +W+ L A WP +LI + A K L++ I
Sbjct: 674 VLDTLLRLLHPFMPFITEEIWQ-KLPGTESIHLASWPEV-DEELIDEEAEKEFELLKEII 731
Query: 966 VLMRKL 971
+R L
Sbjct: 732 SAIRNL 737
Score = 75.4 bits (186), Expect = 1e-13
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
EIE K + WEES F +P E F + P P + G LH+GHA +++ +
Sbjct: 9 EIEEKWYKKWEESGYF------KPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDIL 62
Query: 131 AAYHRLKGANVLLPFGFHCTGMP 153
A Y R++G NVL P G G+
Sbjct: 63 ARYKRMRGYNVLWPPGTDHAGIA 85
Score = 31.4 bits (72), Expect = 3.8
Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 250 KEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPC 309
+E L+ G+ DW R T ++P VQ +L G I + R + P
Sbjct: 125 REQLRRLGVSVDWSRERFT--MDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAI 182
Query: 310 ADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVL 369
+D + E IK PL YL AT RPET+ G T V
Sbjct: 183 SDIEVEYKE--VEGKLYYIKY-----------PLADGDGYLVVATTRPETLLGDTAVAVH 229
Query: 370 PD 371
PD
Sbjct: 230 PD 231
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 74.3 bits (183), Expect = 2e-13
Identities = 66/302 (21%), Positives = 101/302 (33%), Gaps = 79/302 (26%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
E+E K + WE+S F +P + F + P P + G LH+GHA ++S +
Sbjct: 9 EVEKKWYKKWEKSGFF------KPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDII 62
Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAE 190
A Y R+KG NVL G G+ + +K E +
Sbjct: 63 ARYKRMKGYNVLWLPGTDHAGIATQVKVEKKL-----------------GAEGKTKHDLG 105
Query: 191 DPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAK 250
++F+ K + +SG + K
Sbjct: 106 R-------EEFREKIWEWKEESGGTI---------------------------------K 125
Query: 251 EDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCA 310
+K G DW R T ++ V+ +L G I + + P + +
Sbjct: 126 NQIKRLGASLDWSRERFT--MDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAIS 183
Query: 311 DHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLE-GKKVYLAAATLRPETMYGQTNAWVL 369
D + + EV PL G K YL AT RPETM+G T V
Sbjct: 184 DIE-------------VEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVH 230
Query: 370 PD 371
P+
Sbjct: 231 PE 232
Score = 69.7 bits (171), Expect = 6e-12
Identities = 94/453 (20%), Positives = 150/453 (33%), Gaps = 89/453 (19%)
Query: 540 VGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMS------RSGDECVVALTDQWYI 593
G + G +A R K++E + + RSG L+ QW++
Sbjct: 305 AGKYQGLTRFEA----RKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFV 360
Query: 594 TYGEEEWKRLATECL--NSMNLY--HDENRHGFEHTLGWLNQWACSRSFGLGTRIP-W-- 646
E+ A E + E R + + L + W SR G RIP W
Sbjct: 361 KV--EKLADKALEAAEEGEIKFVPKRMEKR--YLNWLRNIKDWCISRQLIWGHRIPVWYC 416
Query: 647 --DPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTD--------EVWEF 696
+ V G + Q TD +W F
Sbjct: 417 KECGEVYVAKEEPLPD------------DKTNTGPSVELE---QDTDVLDTWFSSSLWPF 461
Query: 697 IFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRH 756
G P ++ + +YP DL V+G D+I + I+ A+ Q
Sbjct: 462 STLGWP-------------DETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVP 508
Query: 757 WPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFD 815
+ + +G + KMSKS GN IE++ ADA RF+LA DD NF +
Sbjct: 509 FKEVY-IHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWK 567
Query: 816 TANTGILRLTKEIAW---------MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTD 866
+ L K W + + L + + ADR +++N ++
Sbjct: 568 RVESARNFLNK--LWNASRFVLMNLSDDLELSGGEE---KLSLADRWILSKLNRTIKEVR 622
Query: 867 QHYKNYMFREALKT-------GFYD--LQAARDEYRLSCGAGGLNRDLVWR---FMDVQT 914
+ Y F EA K F D ++ + YRL G + +D
Sbjct: 623 KALDKYRFAEAAKALYEFIWNDFCDWYIELVK--YRLYNGNEAEKKAARDTLYYVLDKAL 680
Query: 915 RLITPICPHYAEYVWRVILKKDGFAVKAGWPTY 947
RL+ P P E +W+ + + +P
Sbjct: 681 RLLHPFMPFITEEIWQHFKEGADSIMLQSYPVV 713
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 73.6 bits (181), Expect = 4e-13
Identities = 178/944 (18%), Positives = 310/944 (32%), Gaps = 218/944 (23%)
Query: 62 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHA 121
F R L + E K+ +W+E+++F PE F + P PY NG +HLGHA
Sbjct: 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPE---FIFHDGP-PYANGSIHLGHA 56
Query: 122 FSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181
+ + Y ++G NV G+ G+PI E K EK+
Sbjct: 57 LNKILKDIILRYKTMQGFNVTRKPGWDTHGLPI---------EHK-----------VEKK 96
Query: 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKW 241
++ ++F+ K + A K Q E R
Sbjct: 97 LGISGKKEISSLEI---EEFREKCREFALK------QIEEQR------------------ 129
Query: 242 LNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIY 301
E + G+ DW + T ++P ++ W ++ G + + ++ +
Sbjct: 130 ---------EQFQRLGVWGDWENPYKT--MDPSYEESQWWLFKEAHEKGLLYRGLKPVYW 178
Query: 302 SPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKV---YLAAATLRPE 358
SP A+ + E + I ++ FP K KV L T P
Sbjct: 179 SPRCRTALAEAEVEYKENYKDVKDPSIYVK----FPVKKDKKTYLKVKLSSLLIWTTTPW 234
Query: 359 TMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTC--LVELTGY 416
T+ V PD +Y + + + + + Y + G
Sbjct: 235 TLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYN-----KAGSDYEIIKTFKGS 289
Query: 417 DLIGLPLKSPLSFNEVIYALPMLTIL------TDKGTGIVTSVPSDAP-DDYMALHDLKA 469
DL GL + PL ++ T+ GTGIV + P D +
Sbjct: 290 DLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGK----- 344
Query: 470 KPAFRAKFGVKDEWVLPFEVIPIIN-IPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLT 528
K+G+ +++ + E G
Sbjct: 345 ------KYGL-----------EVLSPVDEKG----------------------------V 359
Query: 529 YLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETG-----EAIMYSEPEKRVMSRSGDEC 583
Y G + A K + A +I +L + G E I +S P R+
Sbjct: 360 YTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHC---WRTKTPV 416
Query: 584 VVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHG---FEHTLGWLNQWACSRSFGL 640
+ T+QW+I + K + + L + + G F + L W SR
Sbjct: 417 IYRATEQWFI-----KTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYW 471
Query: 641 GTRIP-WDPQFLVESLSDSTIYMAYYTVA--------HMLHKGDMYGSTTGSIEPGQMTD 691
G IP W + E + +I + LH+ + T S + G+
Sbjct: 472 GIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRR 531
Query: 692 E-----VWEFIFCGGPYPESSNIPSSILN--RMKQEFEYWYPFDLRVSGKD-----LIQN 739
VW F +S ++P + ++ ++F+ +P D + G D +
Sbjct: 532 VPDVLDVW---F------DSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSS 582
Query: 740 HLTFCIYNHTAIMSQRHWP-RGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATR 797
A P + +G + KMSKS GN + I ++ AD R
Sbjct: 583 LAIGTALFGQA-------PYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILR 635
Query: 798 FSLADAGDGVDDANFVFDTANTGILRLTKEIAWME-EVLAVESSLRTGPPSTYADRVFEN 856
+A + D +D F D ++ ++I W L ++L P + V +
Sbjct: 636 LYVASS-DPWEDLRFS-DEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKF 693
Query: 857 ---------EINIAVEMTDQHYKNYMFREALKT----------GFYDLQAARDEYRLSCG 897
+N VE ++ + Y F + L+ +Y ++ RD RL C
Sbjct: 694 PEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWY-IRIIRD--RLYCE 750
Query: 898 AG-GLNRD---LVWRFMDVQTRLITPICPHYAEYVWRVILKKDG 937
A R ++ + RL+ P PH AE +++ + +
Sbjct: 751 AKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEE 794
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 66.7 bits (163), Expect = 1e-12
Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 13/143 (9%)
Query: 851 DRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAAR-DEY------RLSCGAGGLNR 903
DR + +N ++ + Y+ Y F A + D Y RL A +R
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDR 60
Query: 904 ---DLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGT--PDLILKSAN 958
+++ ++ RL+ P P E +W+ L K A WP D L+
Sbjct: 61 SAQTVLYEVLETLLRLLAPFMPFITEELWQ-KLGKKESIHLAPWPEPDEVEEDEELEEEF 119
Query: 959 KYLQDSIVLMRKLLQKQILGSKK 981
+ Q+ + +RKL + +
Sbjct: 120 ELRQEIVQAIRKLRSELKIKKSL 142
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 68.7 bits (169), Expect = 1e-11
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
E+E K WEE + +P ER P + + P P ++G LH+GH FS++ +F
Sbjct: 14 ELEEKWQKIWEEEGTYKFDPDERKPV------YSIDTPPPTVSGSLHIGHVFSYTHTDFI 67
Query: 131 AAYHRLKGANVLLPFGFHCTGMPI 154
A Y R++G NV P G+ G+P
Sbjct: 68 ARYQRMRGYNVFFPQGWDDNGLPT 91
Score = 63.3 bits (155), Expect = 6e-10
Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 721 FEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNG-----HIMLNS---- 771
FE +P DLR G D+I+ L F +T + + G +IM++
Sbjct: 481 FEKVFPMDLRPQGHDIIRTWL-F----YTILRAYLL-------TGKLPWKNIMISGMVLD 528
Query: 772 ---EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTAN--------TG 820
+KMSKS GN T ++ +E++ ADA R+ A A G D FD T
Sbjct: 529 PDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSD---TPFDEKQVKIGRRLLTK 585
Query: 821 ILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK- 879
+ ++ + + + P DR ++ VE + +NY F +AL+
Sbjct: 586 LWNASRFVLHFSADPEPDKAEVLEP----LDRWILAKLAKVVEKATEALENYDFAKALEE 641
Query: 880 --TGFYDLQAARDEY------RLSCGAGGLNRDLVW----RFMDVQTRLITPICPHYAEY 927
+ F+ + D+Y R + +D RL+ P P E
Sbjct: 642 IESFFWHVFC--DDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEE 699
Query: 928 VWRVILKKDGFAVKAGWPTY 947
VW + G +A WP
Sbjct: 700 VWSWL--YGGSVHRASWPEP 717
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 61.9 bits (151), Expect = 2e-09
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
E+ES + WWE+S F P E + SG+KF P P + GYLH+GHA + + +
Sbjct: 32 EVESGWYEWWEKSGFFK--PAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSL 89
Query: 131 AAYHRLKGANVL 142
YHR+KG L
Sbjct: 90 IRYHRMKGDETL 101
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 58.0 bits (141), Expect = 3e-09
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 727 FDLRVSGKDLIQNH------LTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 780
FD+ G DLI H + R+W GH+ ++ EKMSKS GN
Sbjct: 129 FDIHGGGVDLIFPHHENEIAQSEAATGKP---FARYWLH----TGHLTIDGEKMSKSLGN 181
Query: 781 FRTLKQAIEEFSADATRFSL 800
F T++ A++++ + R +L
Sbjct: 182 FITVRDALKKYDPEVLRLAL 201
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 60.0 bits (146), Expect = 4e-09
Identities = 59/259 (22%), Positives = 85/259 (32%), Gaps = 52/259 (20%)
Query: 575 VMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNL-YHDENRHGFEHTL-GWLNQ- 631
V SRSGD L QW++ + + A E + ++ + E E WL
Sbjct: 155 VCSRSGDVIEPLLKPQWFVKVKDL--AKKALEAVKEGDIKFVPER---MEKRYENWLENI 209
Query: 632 --WACSRSFGLGTRIP-WDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQ 688
W SR G RIP W +A + G E Q
Sbjct: 210 RDWCISRQLWWGHRIPAW------YCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQ 263
Query: 689 MTD--------EVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNH 740
D +W F G P ++ + +YP L V+G D+I
Sbjct: 264 DEDVLDTWFSSSLWPFSTLGWP-------------EETKDLKKFYPTSLLVTGHDIIFFW 310
Query: 741 LTFCIYNHTAIMSQRHWPRGFRCNGHIMLNS-------EKMSKSTGNFRTLKQAIEEFSA 793
+ I + + + + L+ KMSKS GN I+ + A
Sbjct: 311 VARMIMRGLKLTGKLPFKE-------VYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGA 363
Query: 794 DATRFSLADAGDGVDDANF 812
DA RF+LA A D N
Sbjct: 364 DALRFTLASAATQGRDINL 382
Score = 53.4 bits (129), Expect = 4e-07
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMP 153
P P + G LH+GHA + + + A Y R+KG NVL P G G+
Sbjct: 8 PPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIA 53
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 60.5 bits (147), Expect = 4e-09
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 68 RLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKL 127
+EIE K W+E+ F + + S K++ FPY +G LH+GH +++
Sbjct: 2 NHIEIEEKWQQKWDENKTF------KVTDDSSKPKYYILSMFPYPSGALHMGHVRNYTIT 55
Query: 128 EFAAAYHRLKGANVLLPFGFHCTGMP 153
+ + Y+R+KG NVL P G+ G+P
Sbjct: 56 DVLSRYYRMKGYNVLHPIGWDAFGLP 81
Score = 37.8 bits (88), Expect = 0.035
Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 40/224 (17%)
Query: 772 EKMSKSTGNFRTLKQAIEEFSADATRFSLADAG----------DGVDDANFVFDTANTGI 821
EKMSKS GN ++ +E + ADA R + G G++ A D +
Sbjct: 604 EKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDR----V 659
Query: 822 LRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTG 881
L EI + ++ T A + +++ ++ + + RE+ T
Sbjct: 660 WNLVYEITGELDAASL-----TVTALEEAQKELRRDVHKFLKKVTEDLEK---RESFNTA 711
Query: 882 FYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVK 941
+ ++ L+ ++ +++P PH AE +W + +
Sbjct: 712 ISAMMELLNKL-----YKAKKEALMLEYLKGFVTVLSPFAPHLAEELWEKLGSEPFIIDN 766
Query: 942 AGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKK 985
A WP + ++V + L+ Q+ G +A
Sbjct: 767 AKWP-------------VVDETALVEDKTLIVVQVNGKFRAKIT 797
Score = 32.0 bits (73), Expect = 2.2
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 224 SFGL--SDSEISEFQEPEKW----LNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDS 277
+FGL ++ I P KW + K+ L+A G DW R T + P +
Sbjct: 77 AFGLPAENAAIKRGIHPAKWTYENIANM----KKQLQALGFSYDWDREIATCD--PEYYK 130
Query: 278 FVQW 281
+ QW
Sbjct: 131 WTQW 134
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 59.1 bits (144), Expect = 1e-08
Identities = 89/416 (21%), Positives = 147/416 (35%), Gaps = 100/416 (24%)
Query: 62 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFF---GNFPFPYMNGYLHL 118
F R L + E K+ +WEE++++ R + KF G P PY NG +H+
Sbjct: 13 DFPMRANLPKKEPKILKFWEENDIYEKI---REERNKGKPKFVLHDG--P-PYANGNIHI 66
Query: 119 GHAF-SFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKE 177
GHA K + Y ++G +V G+ C G+PI+ +K K+
Sbjct: 67 GHALNKILK-DIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKK---------- 115
Query: 178 AEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQE 237
ES +++F+ K + A + Q +
Sbjct: 116 --DIESF------------GVEEFREKCREFALE------QVDEQ--------------- 140
Query: 238 PEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSM---GKIIK 294
KE K G+ DW + T ++P S+ + K + G + +
Sbjct: 141 ------------KEQFKRLGVWGDWENPYKT--MDP---SYEESVWWAFKELYEKGLLYR 183
Query: 295 DVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAAT 354
+ +SP + A+ + G+ P Y +K FP K + YL T
Sbjct: 184 GYKPVPWSPRCETALAEAEVEYGDVKDPSIY--VK------FPVK-DEGLDENAYLVIWT 234
Query: 355 LRPETMYGQTNAWVLPDGKYGAFEISETDVLIVT----ERAALNLAYQNFSRIPKKPTCL 410
P T+ V PD Y E+ + LI+ E A +++ L
Sbjct: 235 TTPWTLPANLAIAVHPDLDYVLVEV-NGEKLILAKALVESVAKKAGVEDYEV-------L 286
Query: 411 VELTGYDLIGLPLKSPLSFNEVIYALPMLT---ILTDKGTGIVTSVPSDAPDDYMA 463
G +L GL + P A P++ + D GTG+V + P +DY
Sbjct: 287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEV 342
Score = 44.1 bits (105), Expect = 4e-04
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 763 CNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF---VFDTAN 818
+G ++ KMSKS GN + I+++ AD R +A + D +D F +
Sbjct: 591 THGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVA-SSDYWEDLRFSDEILKQVR 649
Query: 819 TGILRLTKEIAWM---------EEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY 869
++ ++ ++ + LR DR + +N V+ + Y
Sbjct: 650 EVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRE------LDRWILSRLNSLVKEVREAY 703
Query: 870 KNYMFREALK----------TGFYDLQAARDEYRLSCGAGG-LNR----DLVWRFMDVQT 914
+NY F + ++ + +Y L +D RL A +R ++ +
Sbjct: 704 ENYDFHKVVRALMNFVSEDLSNWY-LDIIKD--RLYTEAADSPDRRAAQTTLYHILKALV 760
Query: 915 RLITPICPHYAEYVWR 930
RL+ PI P AE +W+
Sbjct: 761 RLLAPILPFTAEEIWQ 776
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 58.6 bits (143), Expect = 1e-08
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSL 800
NG + +N EKMSKS GNF T++ ++++ + RF L
Sbjct: 257 NGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL 293
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 56.5 bits (137), Expect = 4e-08
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 720 EFEYWYPFDLRVS-----GKDLIQNHLTFCIYNHTAIMSQRH-WPRGFRCNGHIMLNSEK 773
+++ ++ D GKD+I+ H IY +M+ P +G + + K
Sbjct: 268 KWKKFWADDPDTEIVHFIGKDIIRFH---AIYWPAMLMAAGLPLPTQVFAHGWLTVEGGK 324
Query: 774 MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIA 829
MSKS GN + ++ + DA R+ LA D +F ++ + R+ E+A
Sbjct: 325 MSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF---VERVNSELA 377
Score = 38.8 bits (91), Expect = 0.017
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM-----PIKASADKLA 162
PY+NG H+GH ++ + A Y RL+G +V TG I+ +A+K
Sbjct: 6 ALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDV-----LFVTGTDEHGTKIELAAEKEG 60
Query: 163 REIKQF 168
++
Sbjct: 61 VTPQEL 66
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 56.1 bits (136), Expect = 8e-08
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLK 785
FD+ G DLI H I A + + + + NG + ++ EKMSKS GNF T++
Sbjct: 221 TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVR 280
Query: 786 QAIEEFSADATRFSL 800
++++ + R L
Sbjct: 281 DLLKKYDPEVLRLFL 295
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 54.8 bits (132), Expect = 2e-07
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 3 HKPKNSISNISKQSIKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKS 62
+S S + + A S R+S +L A + T
Sbjct: 17 RFTSLRLSLFLVVSSAQTPASASSYFRRSRRGGVSRSLTRRA--FAAPSALTSTTAKTTP 74
Query: 63 FARRDR-LLEIESKVHTWWEESNVFNAEPGERPPN--PESGEKFFGNFPFPYMNGY-LHL 118
A+R EIE K +WEE+ F R P+ S KF+ FPY +G LH+
Sbjct: 75 AAKRAYPFHEIEPKWQRYWEENRTF------RTPDDVDTSKPKFYVLDMFPYPSGAGLHV 128
Query: 119 GHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMP 153
GH ++ + A Y R++G NVL P G+ G+P
Sbjct: 129 GHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLP 163
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 53.9 bits (130), Expect = 3e-07
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 725 YPFDLRVSGKDLIQNH------LTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKST 778
D+ G DLI H + + ++W NG +M+++EKMSKS
Sbjct: 218 DQIDIHGGGVDLIFPHHENEIAQSEAAFGKQLA---KYWMH----NGFLMIDNEKMSKSL 270
Query: 779 GNFRTLKQAIEEFSADATRFSLA 801
GNF T++ ++ + + R+ L
Sbjct: 271 GNFFTVRDVLKNYDPEILRYFLL 293
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 52.3 bits (126), Expect = 5e-07
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 725 YPFDLRVSGKDLIQNH------LTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKST 778
D+ G DL H + ++ ++W NGH+M+ EKMSKS
Sbjct: 206 SQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLA---KYWLH----NGHLMIEGEKMSKSL 258
Query: 779 GNFRTLKQAIEEFSADATRFSLADA 803
GNF T++ ++ + R+ L
Sbjct: 259 GNFLTIRDVLKRYDPRILRYFLLSV 283
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 52.8 bits (128), Expect = 8e-07
Identities = 40/178 (22%), Positives = 60/178 (33%), Gaps = 60/178 (33%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRHWP-----RGFR------CNGHIMLNSEKMSKSTGNF 781
GKD+I H + WP G+R +G + + KMSKS G F
Sbjct: 291 GKDIIYFH---------TLF----WPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTF 337
Query: 782 RTLKQAIEEFSADATRFSLA-DAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESS 840
+ ++ D R+ LA + +DD +F ++ + V S
Sbjct: 338 IWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWE----------------DFQQRVNSE 381
Query: 841 L---------RT----------GPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK 879
L RT P AD E A E + Y+ FR+AL+
Sbjct: 382 LVGKVVNFASRTAGFINKRFDGKLPDALADPELLEEFEAAAEKIAEAYEAREFRKALR 439
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 51.8 bits (125), Expect = 9e-07
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 711 SSILNRMKQEFEYWYPFD-----LRVSGKDLIQNHLTFCIYNHTAIMSQRHW-PRGFRCN 764
S+ ++ W+ D + GKD+I+ H IY ++ P +
Sbjct: 215 SATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFH---AIYWPAMLLGAGLPLPTRIVAH 271
Query: 765 GHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812
G++ + +KMSKS GN +E + ADA R+ L D++F
Sbjct: 272 GYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319
Score = 39.8 bits (94), Expect = 0.006
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 167
PY+NG HLGH + + A Y RL+G +VL G G I+ A++ ++
Sbjct: 7 ALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQE 66
Query: 168 F 168
Sbjct: 67 L 67
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 52.3 bits (126), Expect = 1e-06
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 22/162 (13%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRH-WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEF 791
GKD+I+ H +Y +M+ P +G + L +KMSKS GN + +E++
Sbjct: 295 GKDIIRFH---AVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQY 351
Query: 792 SADATRFSLADAGDGVDDANF---VFDTANTGIL---------RLTKEIA-WMEEVLAVE 838
DA R+ LA D +F F L R I + + V+
Sbjct: 352 GVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPA- 410
Query: 839 SSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKT 880
G P D A+E + + Y FR+AL+
Sbjct: 411 ----AGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEE 448
Score = 39.2 bits (92), Expect = 0.015
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 167
PY NG HLGH +++ + A Y RL+G V G G I+ A+K ++
Sbjct: 12 ALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQE 71
Query: 168 F 168
Sbjct: 72 L 72
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 50.5 bits (122), Expect = 5e-06
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFF--GNFPFPYMNGYLHLGHAFSFSKLE 128
EIE K +WEE+ F +S +K++ FP+P +G LH+GH +++ +
Sbjct: 9 EIEKKWQKYWEENKTFKT-------TEDSSKKYYVLDMFPYP--SGGLHMGHVRNYTIGD 59
Query: 129 FAAAYHRLKGANVLLPFGFHCTGMP 153
A Y R++G NVL P G+ G+P
Sbjct: 60 VIARYKRMQGYNVLHPMGWDAFGLP 84
Score = 43.1 bits (103), Expect = 8e-04
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 55/198 (27%)
Query: 773 KMSKSTGNFRTLKQAIEEFSADATR-FSLADAGDGVDDANFVFDTANTGILRLTKEIAWM 831
KMSKS GN IE++ AD R F + K++ W
Sbjct: 570 KMSKSKGNVVDPDDIIEKYGADTARLFEMFAG-------------------PPEKDLEWS 610
Query: 832 EEVLAVESSLRTGPPSTYADRVF-----ENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 886
+ VE + R + RV+ A+++ + R+ KT ++
Sbjct: 611 DS--GVEGAYR------FLQRVWRLVVDAKGEAGALDVAALSEDKELRRKLHKT----IK 658
Query: 887 AARDEY-----------------RLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVW 929
++ L ++ ++ +++ RL+ P PH AE +W
Sbjct: 659 KVTEDIERLRFNTAIAALMELVNALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELW 718
Query: 930 RVILKKDGFAVKAGWPTY 947
L +G A WPT
Sbjct: 719 EK-LGHEGSIANAPWPTA 735
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 49.4 bits (118), Expect = 1e-05
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 73 ESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAA 132
E ++ WEE+ V+ +R + +GE F + PY NG LH+GHA + +F
Sbjct: 9 EPEIQKLWEENQVY-----KRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINR 63
Query: 133 YHRLKGANVLLPFGFHCTGMPIK----ASADKLARE 164
Y L+G V G+ C G+PI+ S D+ AR+
Sbjct: 64 YQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARK 99
Score = 30.9 bits (70), Expect = 4.8
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 914 TRLITPICPHYAEYVWRVI-----LKKDGFAVKAGWPT 946
R I PI PH AE W+ + +AGWPT
Sbjct: 777 LRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPT 814
Score = 30.1 bits (68), Expect = 9.7
Identities = 29/137 (21%), Positives = 41/137 (29%), Gaps = 20/137 (14%)
Query: 346 KKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPK 405
+ LA T P TM V +Y E+ T N + +
Sbjct: 217 PGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQ 276
Query: 406 KPTCLV--------------------ELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDK 445
K +V G DL G PL E + I T+
Sbjct: 277 KLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTES 336
Query: 446 GTGIVTSVPSDAPDDYM 462
GTG+V + P +DY+
Sbjct: 337 GTGLVHTAPGHGQEDYI 353
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 47.9 bits (115), Expect = 2e-05
Identities = 41/246 (16%), Positives = 77/246 (31%), Gaps = 58/246 (23%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILR 823
+ ++ L K SKS G + A+E + D R+ LA D +F ++ + R
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEF---VRR 381
Query: 824 LTKEIA--W--------------MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQ 867
+ E+A + ++ DR E + +
Sbjct: 382 VNSELADKYGNLVNRVLSFIEKYFGGIVP-------PGELGDEDRELIAEAEALFKEVGE 434
Query: 868 HYKNYMFREALKT---------GFYDLQA---ARDEYRLSCGAG---GLN--RDLVWRFM 910
+ F++AL+ + D +A R LN R L
Sbjct: 435 LLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLL----- 489
Query: 911 DVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRK 970
L+ P P A+ +W ++ ++ K W + + L +K
Sbjct: 490 ---AVLLYPFLPFSAQKIWEMLGGEN--IEKLTWESLKPL-----LPGHPINKPEPLFKK 539
Query: 971 LLQKQI 976
+ +QI
Sbjct: 540 IDDEQI 545
Score = 37.9 bits (89), Expect = 0.030
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFA------AAYHRLKGANVLLPFGFHCTGMPIKASADKL 161
+PY NG LHLGH A Y RLKG VL G G PI+ +A K
Sbjct: 10 AWPYANGPLHLGHL-----AGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE 64
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 45.3 bits (107), Expect = 2e-04
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 725 YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ---RHWPRGFRCNGHIMLNSEKMSKSTGNF 781
+ FD+ G DL+ H I A +W NG + ++SEKMSKS GNF
Sbjct: 276 HSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIH----NGFVTVDSEKMSKSLGNF 331
Query: 782 RTLKQAIEEFSADATRFSL 800
T++Q I+ + A R L
Sbjct: 332 FTIRQVIDLYHPLALRLFL 350
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 45.1 bits (108), Expect = 3e-04
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 24/83 (28%)
Query: 71 EIESKVHTWWEESNVFNAEPGER--------PPNPESGEKFFGNFPFPYMNGYLHLGHAF 122
E+E+K + WEE F + + PPN + G LH+GHA
Sbjct: 13 EVEAKWYQKWEEKGYFKPDDNSKKPFSIVIPPPN---------------VTGSLHMGHAL 57
Query: 123 SFSKLEFAAAYHRLKGANVL-LP 144
+ + + Y R++G N L LP
Sbjct: 58 NNTLQDILIRYKRMQGYNTLWLP 80
Score = 40.1 bits (95), Expect = 0.007
Identities = 48/209 (22%), Positives = 69/209 (33%), Gaps = 54/209 (25%)
Query: 773 KMSKSTGN-------FRTLKQAIEEFSADATRFSLAD-AGDGVDDANFVFDTANTGILRL 824
KMSKS GN I+++ ADA RF+LA A G D FD R+
Sbjct: 520 KMSKSKGNVIDPLDL-------IDKYGADALRFTLAALASPGRD---IRFDEE-----RV 564
Query: 825 TKEIAW--------------MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYK 870
E M A L + ADR + +N V +
Sbjct: 565 --EGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALD 622
Query: 871 NYMFREALKTGFYDLQAARDEY----------RLSCGAGGLNRDLVWRFMDVQTRLITPI 920
Y F EA + Y+ +E+ L A R + ++ RL+ P
Sbjct: 623 KYRFDEAARA-LYEF--IWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILRLLHPF 679
Query: 921 CPHYAEYVWRVILKKDGFA--VKAGWPTY 947
P E +W+ + + A WP
Sbjct: 680 MPFITEELWQKLAPLGIEESIMLAPWPEA 708
Score = 31.6 bits (73), Expect = 2.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 342 PLEGKKVYLAAATLRPETMYGQT 364
PL YL AT RPETM G T
Sbjct: 205 PLADGSDYLVVATTRPETMLGDT 227
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 44.5 bits (105), Expect = 4e-04
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 58 ESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLH 117
E+ KSF E +++ WWE F +P G+ F P P + G LH
Sbjct: 56 ETAKSFD-----FTSEERIYNWWESQGYF------KPNFDRGGDPFVIPMPPPNVTGSLH 104
Query: 118 LGHAFSFSKLEFAAAYHRLKG 138
+GHA + + Y+R+KG
Sbjct: 105 MGHAMFVTLEDIMVRYNRMKG 125
Score = 41.9 bits (98), Expect = 0.002
Identities = 103/459 (22%), Positives = 175/459 (38%), Gaps = 80/459 (17%)
Query: 542 DFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRS--GDECVVAL-TDQWYITYGEE 598
+ AG +A+ + S L ETG A+ EP + RS G E + L + QW++T
Sbjct: 359 EVAGLYWFEAREKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPL 417
Query: 599 EWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIP-WDPQFLVESLSD 657
K L + + + + H L + W SR G RIP W ++V +
Sbjct: 418 AEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW---YIVGKDCE 474
Query: 658 STIYMAYYTVAHMLHKG-DMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESS-NIPSSILN 715
Y+ + L K + YG +E Q D V + F +P S+ P +
Sbjct: 475 ED-YIVARSAEEALEKAREKYGK---DVEIYQDPD-VLDTWFSSALWPFSTLGWP----D 525
Query: 716 RMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNG-----HIMLN 770
++F+ +YP + +G D++ F +M G G ++ L+
Sbjct: 526 VSAEDFKKFYPTTVLETGHDIL-----FFWVARMVMM-------GIEFTGTVPFSYVYLH 573
Query: 771 S-------EKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVD--------DANFVFD 815
KMSK+ GN I+EF DA RF+LA G D +N F
Sbjct: 574 GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFT 633
Query: 816 TA--NTGILRL-----TKEIAWMEEVLAV----ESSLRTGPPSTYADRVFENEINIAVEM 864
N G L + + E +LA E SL + P + ++++ ++
Sbjct: 634 NKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLP---ECWVVSKLHELIDS 690
Query: 865 TDQHYKNYMFREALKTGFYD----------LQAARDEYRLSCGAGGLNRD---LVWRFMD 911
Y Y F + + YD ++A++ S L+R L++ F +
Sbjct: 691 VTTSYDKYFFGDVGRE-IYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFEN 749
Query: 912 VQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP 950
+ +L+ P P E +W+ + + + + WP P
Sbjct: 750 I-LKLLHPFMPFVTEELWQALPYRKEALIVSPWPQTSLP 787
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 44.0 bits (105), Expect = 6e-04
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 23/111 (20%)
Query: 71 EIESKVHTWWEESNVFNA--EPGERPPNPESGEKFFGNFPF----PYMNGYLHLGHAFS- 123
+E +V +W+E+++F E N E G +F F P NG H GH +
Sbjct: 15 ALEEEVLKFWKENDIFEKSIE------NREGGPEFV----FYDGPPTANGLPHYGHLLTR 64
Query: 124 FSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL-----AREIKQFG 169
K + Y +KG V G+ G+P++ +K ++I+++G
Sbjct: 65 TIK-DVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYG 114
Score = 39.7 bits (94), Expect = 0.010
Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 68/219 (31%)
Query: 763 CNGHIML--NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF----VFDT 816
+GH+ L + +KMSKS GN+ + +++ ADA R+ L + +D F V +
Sbjct: 581 VHGHV-LDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREV 639
Query: 817 ANTGILRL-----------------TKEIAWMEEVLAVESSLRTGPPSTYADRVFENEIN 859
+L L + L DR + +N
Sbjct: 640 VRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNEL------------DRWILSRLN 687
Query: 860 IAVEMTDQHYKNYMFREALKTGFYDLQAARDE----Y-RLSCGAGGLNRDLVW------- 907
V+ + NY +A + ++ D+ Y R S R W
Sbjct: 688 SLVKEVTEALDNYDITKAARA----IRDFVDDLSNWYIRRS-------RRRFWKEEDDPD 736
Query: 908 ---------RFMDVQTRLITPICPHYAEYVWRVILKKDG 937
++ +RL P P AE +++ + ++D
Sbjct: 737 KLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDA 775
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 43.5 bits (103), Expect = 7e-04
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 725 YPFDLRVSGKDLI----QNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 780
P D+ G DL N L A + W F +GH+ + KMSKS N
Sbjct: 267 DPIDIHSGGIDLKFPHHDNELAQS----EAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKN 322
Query: 781 FRTLKQAIEEFSADATRF 798
F T++QA+ +++A R
Sbjct: 323 FITIRQALSKYTARQIRL 340
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 43.1 bits (102), Expect = 8e-04
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 167
PY NG HLGHA++ + A Y RL+G VL G G I+ A++ K+
Sbjct: 6 ALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKE 65
Query: 168 F 168
Sbjct: 66 L 66
Score = 41.2 bits (97), Expect = 0.003
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 712 SILNRMKQEFEYWYPFDLRVS-----GKDLIQNHLTFCIYNHTAIMSQRHW--PRGFRCN 764
IL+ ++++ W+ D GKD+++ H IY A++ P +
Sbjct: 263 GILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFH---TIY-WPAMLMGLGLPLPTQVFSH 318
Query: 765 GHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLA 801
G++ + KMSKS GN + F AD R+ L
Sbjct: 319 GYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLL 355
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 42.3 bits (99), Expect = 0.002
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 57 TESGKSFARRDRLLEIESKVHTWWEESNVFNAE--PGERPPNPESGEKFFGNFPFPYMNG 114
TE K + R E+E++ + +W+E F+ + RPP F P P + G
Sbjct: 13 TELAKGYEHR----EVEARWYPFWQERGYFHGDEHDRTRPP-------FSIVLPPPNVTG 61
Query: 115 YLHLGHAFSFSKLEFAAAYHRLKGANVL-LP 144
LHLGHA + + + + R+ G N L LP
Sbjct: 62 SLHLGHALTATLQDVLIRWKRMSGFNTLWLP 92
Score = 32.7 bits (74), Expect = 1.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 766 HIMLNSEK---MSKSTGNFRTLKQAIEEFSADATRFSLA 801
H M+ EK MSK+ GN E++ ADA RF+LA
Sbjct: 528 HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLA 566
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 41.0 bits (97), Expect = 0.003
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 720 EFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGFRCNGHIMLNSEKMSKST 778
F ++P D+ + GKD+++ H +Y +M+ P+ +G + L+ EKMSKS
Sbjct: 248 LFNKYWPADVHLIGKDILRFH---AVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSL 304
Query: 779 GNFRTLKQAIEEFSADATRFSLA 801
GN ++E+ DA R+ L
Sbjct: 305 GNVIDPFDLVDEYGVDAVRYFLL 327
Score = 38.3 bits (90), Expect = 0.021
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLL 143
P Y NG H+GHA++ + A + RL+G +V
Sbjct: 8 PIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFF 43
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 40.7 bits (96), Expect = 0.004
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 110 PYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
PY NG H GHA + + Y ++G V G+ C G+PI+ +K
Sbjct: 10 PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Score = 35.3 bits (82), Expect = 0.17
Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 64/239 (26%)
Query: 588 TDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIP-W 646
T QW+I + K E + +N + ++ F + L W SR GT IP W
Sbjct: 150 TPQWFIRV--TKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVW 207
Query: 647 DPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTD--EVWEFIFCGGPYP 704
Y G + ++ D +VW F
Sbjct: 208 ------------------------------YCEDCGEVLVRRVPDVLDVW---F------ 228
Query: 705 ESSNIPSSILN--RMKQEFEYWYPFDLRVSGKDLIQN-----HLTFCIYNHTAIMSQRHW 757
+S ++P + L+ ++FE +P D + G D + L A
Sbjct: 229 DSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA------- 281
Query: 758 PRGFR---CNGHIML-NSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANF 812
P ++ +G ++ + KMSKS GN+ ++ ++++ ADA R +A + +D F
Sbjct: 282 P--YKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 40.7 bits (95), Expect = 0.004
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 727 FDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQ 786
D+ + G D I+ H T I A + W R + + +++N KMSKS G F TL
Sbjct: 234 CDIHIGGVDHIRVHHTNEIAQCEAATGKP-WVRYWLHHEFLLMNKGKMSKSAGQFLTLSS 292
Query: 787 AIEE-FSADATRFSLADAGDGVDDANFVFD---TANTGILRLTKEIA-WMEEVLAVESSL 841
E+ F RF L G F ++ TA L + +A ++ A S+
Sbjct: 293 LQEKGFQPLDYRFFLL-GGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSV 351
Query: 842 RTGPPSTYADRVFE 855
R A+RV E
Sbjct: 352 RGTLAECAAERVAE 365
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 41.0 bits (96), Expect = 0.005
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 72 IESKVHTWWEESNVFNAEP-GERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
+E + WWE+S F A+ +PP F P P + G LH+GHA + + +
Sbjct: 105 VEKSWYAWWEKSGYFGADAKSSKPP-------FVIVLPPPNVTGALHIGHALTAAIEDTI 157
Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASAD-KLARE 164
+ R+ G N L G G+ + + KL RE
Sbjct: 158 IRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 192
Score = 32.9 bits (75), Expect = 1.1
Identities = 49/174 (28%), Positives = 67/174 (38%), Gaps = 33/174 (18%)
Query: 220 EIMRSFGLSDSEI--SEF-QEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTE---INP 273
++MR L+ +I EF E KW + + L+ G DW R T +
Sbjct: 188 KLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKA 247
Query: 274 FFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVL 333
++FV +L G I +D+R L + C S V DY IK L
Sbjct: 248 VTEAFV-----RLYKEGLIYRDIR------LVNWDCTLRTAISDVEV---DYIDIKERTL 293
Query: 334 QPFPA-----KFG-------PLEGKKVYLAAATLRPETMYGQTNAWVLP-DGKY 374
P +FG PLEG + AT R ETM G T + P D +Y
Sbjct: 294 LKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERY 347
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 39.3 bits (91), Expect = 0.013
Identities = 47/163 (28%), Positives = 61/163 (37%), Gaps = 40/163 (24%)
Query: 17 IKSSLSLALSLLR------QSAPF-LHRNALRFSALNHSFSQFHDMATESGKSFARRDRL 69
I +SL ALS L+ + PF RN RFS +SQF SGK R
Sbjct: 5 INTSLHNALSFLKAFNTPLNTKPFSFCRNCFRFSKKLPYYSQF-----SSGK------RA 53
Query: 70 LEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEF 129
L S +ES V + + F P Y+N H+G A++ +
Sbjct: 54 LYCTSSS----QESTV------------DEADTFVLTTPLYYVNAPPHMGSAYTTIAADS 97
Query: 130 AAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPP 172
A + RL G V+ G G I SA R NPP
Sbjct: 98 IARFQRLLGKKVIFITGTDEHGEKIATSAAANGR------NPP 134
Score = 31.2 bits (70), Expect = 3.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 717 MKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQ-RHWPRGFRCNGHIMLNSEKMS 775
++ + +P L + GKD+++ H +Y +MS P+ +G + + KM
Sbjct: 312 LETAVSFGWPASLHLIGKDILRFH---AVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMG 368
Query: 776 KSTGNFRTLKQAIEEFSADATRF 798
KS GN + +++F DA R+
Sbjct: 369 KSLGNTLEPFELVQKFGPDAVRY 391
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 38.5 bits (89), Expect = 0.019
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRF 798
NG I ++ EKMSKS GNF T+++ ++++ + RF
Sbjct: 499 NGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRF 533
>gnl|CDD|178549 PLN02965, PLN02965, Probable pheophorbidase.
Length = 255
Score = 35.7 bits (82), Expect = 0.091
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRM 717
I MA Y A M+ G + ++ G T+++W++ F GP P+ I+ M
Sbjct: 95 DKISMAIYVAAAMVKPGSIISPRLKNVMEG--TEKIWDYTFGEGP----DKPPTGIM--M 146
Query: 718 KQEF--EYWY 725
K EF Y+Y
Sbjct: 147 KPEFVRHYYY 156
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 34.8 bits (81), Expect = 0.17
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 852 RVFENEINIAVEMTDQHYKNYM-------------FREALKTGFYDLQAARDEYRLSCGA 898
RV E +I IA ++ D+ M FRE + F L+ ++R CG
Sbjct: 71 RVTEADIRIASQLMDR-----MNLHGEARRAAQQAFREGKEPDF-PLREKLRQFRSVCGG 124
Query: 899 GGLNRDLVWRFMDVQ 913
DL+ F+++Q
Sbjct: 125 ---RFDLLRMFLEIQ 136
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 35.3 bits (81), Expect = 0.26
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 38 NALRF--SALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPP 95
N +F S + + +M T + + ++E E KV +W+ + FN
Sbjct: 41 NKAKFTPSNVRIKTMEGAEMVTVTFTGVSENPNIVEEEEKVLKYWKSIDAFNTS------ 94
Query: 96 NPESGEK---FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM 152
N + K F + P P+ G H GH + + Y G +V FG+ C G+
Sbjct: 95 NKLAKNKKAYIFYDGP-PFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153
Query: 153 PIKASADK 160
PI+ +K
Sbjct: 154 PIEYEIEK 161
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 33.2 bits (76), Expect = 0.27
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 107 FPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANV 141
F NGYLH+GH + +F A +R G V
Sbjct: 3 FSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKV 37
Score = 29.4 bits (66), Expect = 5.4
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 20/77 (25%)
Query: 716 RMKQEFEYW------------YPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRC 763
R+K++ EY D+ + G D + + ++ + P
Sbjct: 71 RIKEDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELG-----LELLKKAGGPARPFG 125
Query: 764 NGHIMLNSE---KMSKS 777
+ KMSKS
Sbjct: 126 LTFGRVMGADGTKMSKS 142
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 34.7 bits (80), Expect = 0.30
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 780
FD++ G DLI H F + A R R + G I L+ EKMSKS GN
Sbjct: 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGN 295
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 34.1 bits (79), Expect = 0.38
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 726 PFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 780
FD++ G DLI H F + A +R + R + G I L+ EKMSKS GN
Sbjct: 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGN 268
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 33.6 bits (77), Expect = 0.85
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 18/58 (31%)
Query: 75 KVHT--WWEESNVFNAEPGERPPNP---------ESGEKFFGNFPFPYMNGYLHLGHA 121
KVHT ++ + +V RP N +G K + FP P NGYLH+GHA
Sbjct: 232 KVHTEVFFSDGSVL------RPSNTKEILEKHLKATGGKVYTRFP-PEPNGYLHIGHA 282
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 33.2 bits (77), Expect = 0.86
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 107 FPFPYMNGYLHLGHAFS 123
FP P NGYLH+GHA S
Sbjct: 34 FP-PEPNGYLHIGHAKS 49
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 32.2 bits (74), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 107 FPFPYMNGYLHLGHAFS-FSKLEFAAAYH 134
FP P NGYLH+GHA + +A Y
Sbjct: 6 FP-PEPNGYLHIGHAKAILLNFGYAKKYG 33
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 32.1 bits (74), Expect = 1.8
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 21/82 (25%)
Query: 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTG---------- 151
F+ P Y NG H+GHA++ + A Y RL+G +V F TG
Sbjct: 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDV-----FFLTGTDEHGQKIQQ 59
Query: 152 ------MPIKASADKLAREIKQ 167
+ D+++ K+
Sbjct: 60 AAEKAGKTPQEYVDEISAGFKE 81
Score = 31.3 bits (72), Expect = 3.9
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 721 FEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-----------RGFRCNGHIML 769
F+ ++P D+ + GKD+++ H IY WP + +G ++
Sbjct: 249 FKKFWPADVHLVGKDILRFH---AIY----------WPIMLMALGLPLPKKVFAHGWWLM 295
Query: 770 NSEKMSKSTGNFRTLKQAIEEFSADATRFSL 800
KMSKS GN ++ ++ + DA R+ L
Sbjct: 296 KDGKMSKSKGNVVDPEELVDRYGLDALRYYL 326
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 32.0 bits (73), Expect = 2.0
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 107 FPFPYMNGYLHLGHAFSFSKLEF--AAAYH 134
FP P NGYLH+GHA S L F A Y
Sbjct: 36 FP-PEPNGYLHIGHAKS-ILLNFGIARDYG 63
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 32.1 bits (73), Expect = 2.3
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 494 NIPEFGDKSAERV----CTDLKIKSQNEKDKLAEAKRLT---YLRGFTEGTMLV-GDFAG 545
N P+ G+ A RV C D KI + KDKL LT Y R FT +L G FA
Sbjct: 103 NQPD-GNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGR-FTRSMLLSQGQFAA 160
Query: 546 KKVQDAKPLIRSKLIE--TGEAI 566
+AKP R++L+E TG I
Sbjct: 161 --FLNAKPKERAELLEELTGTEI 181
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 31.0 bits (71), Expect = 2.3
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 848 TYADRVFENEINIAVEMTDQHYKNYMFREALKT----------GFYDLQAARDEYRLSCG 897
DR + +N ++ + Y+NY F + + FY L +D RL C
Sbjct: 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFY-LDIIKD--RLYCD 99
Query: 898 A-GGLNR----DLVWRFMDVQTRLITPICPHYAEYVWRVI--LKKDGFAVKAGWPT 946
A L R +++ +D +L+ PI P AE VW + KK+ WP
Sbjct: 100 AKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPE 155
>gnl|CDD|215186 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 30.8 bits (70), Expect = 5.0
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 128 EFAAAYHRLKGAN-VLLPFGFHCTGMPIKASADKLARE 164
+AAA+ LKGA+ +L+P GF G+ K A K ARE
Sbjct: 352 AYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARE 389
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 30.4 bits (69), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 668 AHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQE 720
+ ++HKG+ G I+PG T EV +++F GG + P QE
Sbjct: 194 SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246
>gnl|CDD|218375 pfam05004, IFRD, Interferon-related developmental regulator (IFRD).
Interferon-related developmental regulator (IFRD1) is
the human homologue of the rat early response protein
PC4 and its murine homologue TIS7. The exact function of
IFRD1 is unknown but it has been shown that PC4 is
necessary to muscle differentiation and that it might
have a role in signal transduction. This family also
contains IFRD2 and its murine equivalent SKMc15 which
are highly expressed soon after gastrulation and in the
hepatic primordium, suggesting an involvement in early
hematopoiesis.
Length = 309
Score = 30.1 bits (68), Expect = 6.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 36 HRNALRFSALNHSFSQFHDMATESGKSFARRDR 68
+ SQ +AT+S K A++DR
Sbjct: 262 EEEDFVEEDMEALLSQLRQLATDSSKYRAKKDR 294
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 30.3 bits (69), Expect = 6.8
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 414 TGYDLIGLPLKSPL-SFNEVIYALPMLT---ILTDKGTGIVTSVPSDAPDDY 461
G DL + PL + + +P+L + D GTG V + P +D+
Sbjct: 307 KGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDF 358
Score = 30.3 bits (69), Expect = 7.5
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 18/64 (28%)
Query: 540 VGDFAGKKVQDAKPLIRSKLIETG-----EAIMYSEP-----EKRVMSRSGDECVVALTD 589
V D GKK DA + KLIE G + +S P +K V+ R+ T
Sbjct: 391 VIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRN--------TP 442
Query: 590 QWYI 593
QW+I
Sbjct: 443 QWFI 446
>gnl|CDD|117761 pfam09208, Endonuc-MspI, Restriction endonuclease MspI. Members of
this family of prokaryotic restriction endonucleases
recognise the palindromic tetranucleotide sequence
5'-CCGG and cleave between the first and second
nucleotides, leaving 2 base 5' overhangs. They fold into
an alpha/beta architecture, with a five-stranded mixed
beta-sheet sandwiched on both sides by alpha-helices.
Length = 263
Score = 29.9 bits (67), Expect = 6.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 203 SKKSKAAAKSGVQMYQWE-IMRSFGLSDSEISE----FQEPEKWLNFFPPLAKEDLKAFG 257
S K+ + K + Y E I G+SD ++ E FQ F P+ K+ L
Sbjct: 119 SIKNTSKKKVSIHEYDVEDICTGVGISDGDLKELIRKFQNDGSA-KLFTPVQKQRLTE-- 175
Query: 258 LGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKD 295
+ T + P+ + F++W + KS G ++
Sbjct: 176 ---------LDTVLEPYRERFIRWCVTAEKSEGNLLHP 204
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 30.5 bits (69), Expect = 7.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 763 CNGHIML-NSEKMSKSTGNFRTLKQAIEEFSADATRFSL 800
CNG ++ + +KMSKS N+ + I+++ ADA R L
Sbjct: 603 CNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYL 641
>gnl|CDD|192059 pfam08536, Whirly, Whirly transcription factor. This family
contains the plant whirly transcription factors.
Length = 139
Score = 29.1 bits (65), Expect = 7.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 176 KEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISE 234
K A K + +P +G +D+ + A +G + Y WE +SF LS +E E
Sbjct: 6 KAALKVKPVRPTFTALDSGNLRIDRRGGLLLEFAPATGPRQYDWEKKQSFMLSPTEAGE 64
>gnl|CDD|143585 cd07316, terB_like_DjlA, N-terminal tellurium resistance protein
terB-like domain of heat shock DnaJ-like proteins.
Tellurium resistance terB-like domain of the DnaJ-like
DjlA proteins. This family represents the terB-like
domain of DjlA-like proteins, a subgroup of heat shock
DnaJ-like proteins. Escherichia coli DjlA is a type III
membrane protein with a small N-terminal transmembrane
region and DnaJ-like domain on the extreme C-terminus.
Overproduction has been shown to activate the RcsC
pathway, which regulates the production of the capsular
exopolysaccharide colanic acid. The specific function
of this domain is unknown.
Length = 106
Score = 28.3 bits (64), Expect = 7.9
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 850 AD-RVFENEINIAVEMTDQHYKNYM--------FREALKTGFYDLQAARDEYRLSCGAGG 900
AD RV E EI A + DQ + F E ++ F L+ ++R +C G
Sbjct: 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDF-GLEEYARQFRRAC---G 67
Query: 901 LNRDLVWRFMDVQTRL 916
+L+ + ++ ++
Sbjct: 68 GRPELLLQLLEFLFQI 83
>gnl|CDD|173781 cd03361, TOPRIM_TopoIA_RevGyr, TopoIA_RevGyr : The
topoisomerase-primase (TORPIM) domain found in members of
the type IA family of DNA topoisomerases (Topo IA)
similar to the ATP-dependent reverse gyrase found in
archaea and thermophilic bacteria. Type IA DNA
topoisomerases remove (relax) negative supercoils in the
DNA by: cleaving one strand of the DNA duplex, covalently
linking to the 5' phosphoryl end of the DNA break and,
allowing the other strand of the duplex to pass through
the gap. Reverse gyrase is also able to insert positive
supercoils in the presence of ATP and negative supercoils
in the presence of AMPPNP. The TOPRIM domain has two
conserved motifs, one of which centers at a conserved
glutamate and the other one at two conserved aspartates
(DxD). For topoisomerases the conserved glutamate is
believed to act as a general base in strand joining and,
as a general acid in strand cleavage. The DXD motif may
co-ordinate Mg2+, a cofactor required for full catalytic
function.
Length = 170
Score = 29.2 bits (66), Expect = 8.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1079 KLPFGEIEVLQENLDLIK--RQLGLEEVEILSATDPDA 1114
K P E + + L+ ++ R+L LE E+L ATDPD
Sbjct: 93 KCPRCGSENIDDKLETLEALRELALEVDEVLIATDPDT 130
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 29.8 bits (67), Expect = 9.3
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 727 FDLRVSGKDLIQNHLTFCIYNHTAIMS---QRHWPRGFRCNGHIMLNSEKMSKSTGNFRT 783
D+ + G D I H N AI + W F +++ EKMSKS NF T
Sbjct: 234 LDIHLGGVDHIGVHHI----NEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFIT 289
Query: 784 LK 785
+K
Sbjct: 290 IK 291
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 30.1 bits (69), Expect = 9.4
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 851 DRVFENEINIAVEMTDQHYKNYMFREALKT----------GFYDLQAARDEYRLSC-GAG 899
DR + + E + Y+NY F + + FY L +D RL A
Sbjct: 675 DRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY-LDIIKD--RLYTDAAD 731
Query: 900 GLNR-------DLVWRFMDVQTRLITPICPHYAEYVWRVI-LKKDGFAVKAGWPTYGTPD 951
L R + + R + PI AE +W+ + +++ WP
Sbjct: 732 SLARRSAQTALYHILEAL---VRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVPELA 788
Query: 952 LILKSANKY 960
+ K+
Sbjct: 789 DDEELLAKW 797
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 58,880,773
Number of extensions: 5868260
Number of successful extensions: 5146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5036
Number of HSP's successfully gapped: 136
Length of query: 1142
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1035
Effective length of database: 6,191,724
Effective search space: 6408434340
Effective search space used: 6408434340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)