RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039882
(1142 letters)
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics
initiativ structural genomics, ligase-RNA complex; 3.21A
{Pyrococcus horikoshii}
Length = 967
Score = 905 bits (2340), Expect = 0.0
Identities = 317/1088 (29%), Positives = 503/1088 (46%), Gaps = 143/1088 (13%)
Query: 69 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLE 128
IE K W E+ +F ++P +KF+ FPY++G+LH+GHA +++ +
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKP----KEKKFYITVAFPYLSGHLHVGHARTYTIPD 61
Query: 129 FAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEE 188
A + R++G NVL P +H TG PI A+++
Sbjct: 62 VIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDP---------------------- 99
Query: 189 AEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPL 248
W + + + + F++P + +F
Sbjct: 100 ---------------------------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKA 132
Query: 249 AKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQP 308
AKE G DW R F TT + P F F++WQ KLK G I+K + P+ P
Sbjct: 133 AKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192
Query: 309 CADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWV 368
DHD GE V DY +IK E+ + G+ +YL AATLRPET+YG TN WV
Sbjct: 193 LGDHDLMEGEDVPILDYIIIKFELRE---------NGEVIYLPAATLRPETVYGVTNMWV 243
Query: 369 LPDGKYGAFEISETD---VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKS 425
P+ Y ++ D IV++ AA L++Q+ ++ + E G LIG +++
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRN 298
Query: 426 PLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVL 485
P+S +EV LP + D TG+V SVP+ AP D++AL DLK + K+ + V
Sbjct: 299 PVSGDEV-IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVE 357
Query: 486 PFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAG 545
I +I + +GD A L IKSQ +K+KL +A + Y + +G V + G
Sbjct: 358 NITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEG 417
Query: 546 KKVQDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVAL-TDQWYITYGEEEWKRL 603
K VQ+ K I +++E G A IMY EK V+SR G+ V+ + DQW+I YG EWK
Sbjct: 418 KPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477
Query: 604 ATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMA 663
A + L M + + R FE + WL++ AC+R GLGT +PWDP++++ESLSDSTIYMA
Sbjct: 478 ARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMA 537
Query: 664 YYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCG-------GPYPESSNIPSSILNR 716
YYT++ ++K G ++P ++T E +++IF + + IP+ I++
Sbjct: 538 YYTISRHINKLRQE----GKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHE 593
Query: 717 MKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSK 776
MK+EFEYWYP D R SGKDLI NHLTF I+NH AI + HWP+G NG L +KMSK
Sbjct: 594 MKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSK 653
Query: 777 STGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA 836
S GN AIEE AD R + + D ++ ++ + + +
Sbjct: 654 SKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF-- 711
Query: 837 VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSC 896
E ++ DR + +N A++ T + + R A++ FY + Y
Sbjct: 712 AEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT 771
Query: 897 GA--GGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP--DL 952
R ++ DV RL+ P PH E +W L +GF A WP +
Sbjct: 772 EGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEK-LGGEGFVSLAKWPEPVEEWWNE 830
Query: 953 ILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKA 1012
+++ ++++ + ++++++ +K N K + +Y E WK
Sbjct: 831 TIEAEEEFIRSVMEDIKEIIEV----AKIENAK------------RAYIYTAED---WKW 871
Query: 1013 ECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIG 1072
+ ++ K D KS + E +++S + + + K+ K+ ++ + + K
Sbjct: 872 KVAEVVSEKRDFKS-------SMEELMKDSEIRK--HGKEVAKIVQKLIKERTFDVK--- 919
Query: 1073 PQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSP 1132
E + L+E + ++++LG+ E+ I D K P
Sbjct: 920 --------RINEEKALREAKEFMEKELGI-EIIINPTEDKGGKKKQ-----------AMP 959
Query: 1133 GNPTAIFL 1140
P AIF+
Sbjct: 960 LKP-AIFI 966
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 844 bits (2182), Expect = 0.0
Identities = 280/878 (31%), Positives = 422/878 (48%), Gaps = 88/878 (10%)
Query: 69 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLE 128
IE K W E+ +F ++P KF+ FPY++G+LH+GHA +++ +
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEK----KFYITVAFPYLSGHLHVGHARTYTIPD 61
Query: 129 FAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEE 188
A + R++G NVL P +H TG PI A+++
Sbjct: 62 VIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDP---------------------- 99
Query: 189 AEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPL 248
W + + + + F++P + +F
Sbjct: 100 ---------------------------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKA 132
Query: 249 AKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQP 308
AKE G DW R F TT + P F F++WQ KLK G I+K + P+ P
Sbjct: 133 AKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192
Query: 309 CADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWV 368
DHD GE V DY +IK E+ + G+ +YL AATLRPET+YG TN WV
Sbjct: 193 LGDHDLMEGEDVPILDYIIIKFELRE---------NGEVIYLPAATLRPETVYGVTNMWV 243
Query: 369 LPDGKYGAFEISETD---VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKS 425
P+ Y ++ D IV++ AA L++Q+ ++ + E G LIG +++
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRN 298
Query: 426 PLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVL 485
P+S +E + LP + D TG+V SVP+ AP D++AL DLK + K+ + V
Sbjct: 299 PVSGDE-VIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVE 357
Query: 486 PFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAG 545
I +I + +GD A L IKSQ +K+KL +A + Y + +G V + G
Sbjct: 358 NITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEG 417
Query: 546 KKVQDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVAL-TDQWYITYGEEEWKRL 603
K VQ+ K I +++E G A IMY EK V+SR G+ V+ + DQW+I YG EWK
Sbjct: 418 KPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477
Query: 604 ATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMA 663
A + L M + + R FE + WL++ AC+R GLGT +PWDP++++ESLSDSTIYMA
Sbjct: 478 ARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMA 537
Query: 664 YYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGG-------PYPESSNIPSSILNR 716
YYT++ ++K G ++P ++T E +++IF + + IP+ I++
Sbjct: 538 YYTISRHINKLRQEGK----LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHE 593
Query: 717 MKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSK 776
MK+EFEYWYP D R SGKDLI NHLTF I+NH AI + HWP+G NG L +KMSK
Sbjct: 594 MKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSK 653
Query: 777 STGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA 836
S GN AIEE AD R + + D ++ ++ + + +
Sbjct: 654 SKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF-- 711
Query: 837 VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSC 896
E ++ DR + +N A++ T + + R A++ FY + Y
Sbjct: 712 AEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT 771
Query: 897 GA--GGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932
R ++ DV RL+ P PH E +W +
Sbjct: 772 EGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 322 bits (826), Expect = e-102
Identities = 137/252 (54%), Positives = 186/252 (73%)
Query: 319 GVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFE 378
+ PQ+YTL+K++VL+P+P+K L+GK ++L AATLRPETM+GQTN WV PD KY FE
Sbjct: 1 AMGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFE 60
Query: 379 ISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPM 438
D+ I T++AA N++YQ F++ + EL G +++G L +PL+ +VIY LPM
Sbjct: 61 TVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPM 120
Query: 439 LTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEF 498
LTI DKGTG+VTSVPSD+PDD AL DLK K A RAK+G++D+ VLPFE +P+I IP F
Sbjct: 121 LTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGF 180
Query: 499 GDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSK 558
G+ SA +C +LKI+SQN+++KLAEAK YL+GF EG MLV F G+KVQD K I+ K
Sbjct: 181 GNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKK 240
Query: 559 LIETGEAIMYSE 570
+I+ G+A++Y E
Sbjct: 241 MIDAGDALIYME 252
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 299 bits (766), Expect = 5e-93
Identities = 119/311 (38%), Positives = 169/311 (54%), Gaps = 50/311 (16%)
Query: 315 ASGEGVQPQDYTLIKMEVLQPFPAKFGP-------------------------------- 342
SGEGVQPQ+Y IK+E++
Sbjct: 1 GSGEGVQPQEYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSN 60
Query: 343 --------------LEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVT 388
++ KVYL AATLRPETM GQTN WVLP G+YGA+ I++ +V+IV+
Sbjct: 61 PKNKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVS 120
Query: 389 ERAALNLAYQNFS--RIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKG 446
E AA+N+A+Q + + + + E++G DL+ +++PLS E I+ LP+ TI DKG
Sbjct: 121 EHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKG 180
Query: 447 TGIVTSVPSDAPDDYMALHDLKAK-PAFRAKFGVKDEWVL-PFEVIPIINIPEFGDKSAE 504
TGIVTSVPSDAPDDY D+ K+GV +L P+ +PII IP+ G SA
Sbjct: 181 TGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAV 240
Query: 505 RVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGE 564
R+C + + S +++ KL + K + Y +GF G M +G FAG+ V+D K R L++ +
Sbjct: 241 RLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVKDCKQSCRDLLVQNNQ 300
Query: 565 AIMYSEPEKRV 575
I+YSEPE V
Sbjct: 301 CIVYSEPESEV 311
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 296 bits (760), Expect = 8e-93
Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 325 YTLIKMEVLQPFPA-------KFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAF 377
Y IK+ + P + ++ KVYL AATLRPETMYGQT +V P YG F
Sbjct: 3 YVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVF 62
Query: 378 EISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALP 437
+ D I TERA N+++QN + L + G LIG + +P + N+ + LP
Sbjct: 63 DAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLP 122
Query: 438 MLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPE 497
M T+L KGTG+VT VPSD+PDD++ DL KP +G++ +WV +++PI++ +
Sbjct: 123 METVLATKGTGVVTCVPSDSPDDFVTTRDLANKP---EYYGIEKDWV-QTDIVPIVHTEK 178
Query: 498 FGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRS 557
+GDK AE + DLKI+S + +LA AK L Y GF GTML+G + G KV+DAKP ++
Sbjct: 179 YGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQ 238
Query: 558 KLIETGEAIMYSEPEKR 574
LI+ G A +Y+EPE
Sbjct: 239 DLIDEGLAFVYNEPELE 255
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 2e-11
Identities = 101/641 (15%), Positives = 192/641 (29%), Gaps = 188/641 (29%)
Query: 377 FEISET-----DVLIVTERAAL-NLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFN 430
FE E D+L V E A + N ++ +PK ++ D I + S +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHI---IMSK---D 59
Query: 431 EVIYALPMLTILTDKGTGIV----------------------TSVPSDAPDDYMALHD-L 467
V L + L K +V PS Y+ D L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 468 KAKPAFRAKFGV---KDEWVLP---FEVIPIINIPEFGD----KS--AERVCTD------ 509
AK+ V + L E+ P N+ G K+ A VC
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 510 -------LKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIET 562
L +K+ N + + E + + + ++ + + +R I+
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKLRIHSIQ- 231
Query: 563 GEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATEC--------------L 608
+E + + S+ + C++ L + + W C L
Sbjct: 232 ------AELRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 609 NSMNLYH---DENRHGFEH--TLGWLNQWACSRSFGL----GTRIPWDPQFLVESLSDST 659
++ H D + L ++ R L T P + ES+ D
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 660 IYMAYYTVAHMLHK--GDMYGSTTGSIEPGQMTDEVWEF-IFCGGPYPESSNIPSSILNR 716
+ H+ + S+ +EP + +F P S++IP+ +L+
Sbjct: 342 ATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----PPSAHIPTILLSL 394
Query: 717 MKQEFEYWYPFDL--RVSGKDLIQNH---LTFCIYN---------------HTAIMSQRH 756
+ + + ++ L++ T I + H +I+ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 757 WPRGFRCNG------------HI---MLNSEKMSKSTG------NFRTLKQAIEEFSADA 795
P+ F + HI + N E + T +FR L+Q I
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-----H 509
Query: 796 TRFSLADAGDGVDD-------ANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPST 848
+ +G ++ ++ D RL I ++ + +E +L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAI--LDFLPKIEENLICSK--- 563
Query: 849 YADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAAR 889
+ + + IA+ +F EA K Q R
Sbjct: 564 -----YTDLLRIAL----MAEDEAIFEEAHK------QVQR 589
Score = 63.7 bits (154), Expect = 3e-10
Identities = 51/370 (13%), Positives = 110/370 (29%), Gaps = 87/370 (23%)
Query: 811 NFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVF-------ENEINIAVE 863
FV + + + K I EE+ + + + + R+F E + VE
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 864 MTDQHYKNYMF-REALKTGFYDLQAARDEY-----RLSCGAGGLNRDLVWR---FMDVQT 914
+ NY F +KT Y RL + V R ++ ++
Sbjct: 85 EVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 915 RL--ITP---ICPH---------YAEYVWRVILKKDGFAVKAGWPTYG---TPDLILKSA 957
L + P + A V + K W +P+ +L+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-- 200
Query: 958 NKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWK-AECLR 1016
M + L QI + + + L ++ + CL
Sbjct: 201 ----------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLL 248
Query: 1017 IL---QSK-----FDSKSRTFA--PDGEILEALQNSSVGQAS------NF--KQTQKLCM 1058
+L Q+ F+ + ++ + L ++ S + + L +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 1059 PFLRFKKD----EAKAIGPQALDLKLPFGEIEVLQENLDLIK--RQLGLEEV-EILSAT- 1110
+L + E P+ L + E +++ L + + +++ I+ ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSI---IA--ESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1111 ---DPDALSK 1117
+P K
Sbjct: 364 NVLEPAEYRK 373
Score = 51.4 bits (122), Expect = 2e-06
Identities = 88/645 (13%), Positives = 175/645 (27%), Gaps = 211/645 (32%)
Query: 174 FLKEAEKEESPQP-------EEAEDP--NGGAPLDKF------KSKKSKAAAKS-----G 213
FL K E QP E D N K+ K + A
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 214 VQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINP 273
V + + G K +A + ++ + C
Sbjct: 153 VLIDG---VLGSG-------------KTW-----VALDVCLSYKVQC------------- 178
Query: 274 FFDSFVQW-QMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEV 332
D + W ++ S +++ ++ + +D + D +S I+ E+
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNI---KLRIHSIQAEL 234
Query: 333 LQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGK-YGAFEI-----------S 380
+ +K + L L N + K + AF +
Sbjct: 235 RRLLKSK----PYENCLL---VLL--------NVQ---NAKAWNAFNLSCKILLTTRFKQ 276
Query: 381 ETDVLIV--TERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLK----SPLSFNEVIY 434
TD L T +L+ + + + L++ LP + +P + +I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIA 334
Query: 435 AL---------PMLTILTDKGTGIV-TSVPSDAPDDYMALHDLKAKPAFRAKFGV--KDE 482
+ DK T I+ +S+ P +Y + F + V
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD-RLSVFPPSA 385
Query: 483 WVLPFEVIPII--NIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLV 540
+ P ++ +I ++ + V L S EK K T ++
Sbjct: 386 HI-PTILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQP----KESTI-------SIPS 430
Query: 541 GDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQ---WYITYGE 597
K + + + +++ Y+ P+ D+ + DQ +I +
Sbjct: 431 IYLELKVKLENEYALHRSIVDH-----YNIPKT----FDSDDLIPPYLDQYFYSHIGH-- 479
Query: 598 EEWKRLATECLNSMNLYHDENRHGFEHT---LGWLNQWACSRSFGLGTRIPWD-PQFLVE 653
+ N+ H E F +L Q W+ ++
Sbjct: 480 -----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRH------DSTAWNASGSILN 522
Query: 654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSI 713
+L Y Y + ++ + + +F+ P E + I S
Sbjct: 523 TLQQLKFYKPYICDNDP--------------KYERLVNAILDFL----PKIEENLICS-- 562
Query: 714 LNRMKQEFEYWYPFDLRVSGKDLIQNHLTF---CIYNHTAIMSQR 755
+ DL++ L I+ QR
Sbjct: 563 ------------KY------TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 49.9 bits (118), Expect = 5e-06
Identities = 72/495 (14%), Positives = 136/495 (27%), Gaps = 152/495 (30%)
Query: 37 RNALRFSALNHSFSQFHDMATESGKS------------------------FARRDR---L 69
R AL + SGK+ + +
Sbjct: 141 RQALL-ELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 70 LEIESKVHTWWEESNVFNAEPGERPP-NPESGEKFFGNFPF--PYMNGYLHLGHAFSFSK 126
LE+ K+ + + ++ S + PY N L L +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------ 252
Query: 127 LEFAAAYHRLKGANVLLPFGFHCTGMPI---KASADKLA----REIKQFGNPPVFLKEAE 179
++ A F C + K D L+ I + + E
Sbjct: 253 ---------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-E 302
Query: 180 KEE--------SPQ--PEEAEDPNGGAPLDKFKSKKSKAAA--KSGVQMYQ-W------- 219
+ PQ P E P + S A + G+ + W
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLT---TNPR-----RLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 220 --EIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLK--AFGLGCDWRRSFVTTEINPFF 275
I+ S L+ E +E+++ L+ FP L W + +++
Sbjct: 355 LTTIIESS-LNVLEPAEYRKMFDRLSVFP----PSAHIPTILLSLIWFDV-IKSDVMVVV 408
Query: 276 DSFVQWQMRKLKSM-GKIIKDVRYTIYS-------PLDDQPCADHDR------------A 315
+ + S+ K K+ +I S L+++ A H +
Sbjct: 409 NKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKTFDS 461
Query: 316 SGEGVQPQD--------YTLIKMEVLQPFPAKFGPLEGKKVYL----AAATLRPETMYGQ 363
D + L +E + F + V+L +R ++
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLF-----RMVFLDFRFLEQKIRHDSTAWN 515
Query: 364 TNAWVLPD----GKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLI 419
+ +L Y + I + D + L A +F +PK L+ DL+
Sbjct: 516 ASGSILNTLQQLKFYKPY-ICDND----PKYERLVNAILDF--LPKIEENLICSKYTDLL 568
Query: 420 GLPLKSPLSFNEVIY 434
+ L + +E I+
Sbjct: 569 RIALMAE---DEAIF 580
Score = 47.9 bits (113), Expect = 2e-05
Identities = 98/717 (13%), Positives = 195/717 (27%), Gaps = 226/717 (31%)
Query: 459 DDYMALHDLKAK---PAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQ 515
D H + K F F V + F+ + ++P+ E +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAF-VDN-----FDCKDVQDMPKSILSKEE--IDHI----I 55
Query: 516 NEKDKLAEAKRL-TYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIE-----TGEAIMYS 569
KD ++ RL L ++ +V F + ++ + S + + MY
Sbjct: 56 MSKDAVSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 570 EPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDEN--RHGFEHTLG 627
E R+ + + ++ ++ + K + L + L +N G LG
Sbjct: 114 EQRDRLYN------DNQVFAKYNVSRLQPYLKL--RQAL--LELRPAKNVLIDGV---LG 160
Query: 628 ----WLNQWACSRSFGLGTRIP----W-------DPQFLVESLSDSTIYMAYYTVAHMLH 672
W+ C S+ + ++ W P+ ++E L Y +
Sbjct: 161 SGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPNWT 214
Query: 673 KGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPES----SNIPSSILNRMKQEFEYWYPFD 728
+ S + + E+ PY N+ ++ + W F+
Sbjct: 215 SRSDHSSNI-KLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNA---------KAWNAFN 263
Query: 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAI 788
C + L
Sbjct: 264 --------------------------------LSC------------------KILL--- 270
Query: 789 EEFSADATRF-SLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--VESSLRTGP 845
TRF + D + D + LT + + +L ++ + P
Sbjct: 271 ------TTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEV--KSLLLKYLDCRPQDLP 319
Query: 846 PSTYADRVFENEINIAVEM------TDQHYKNYM---FREALKTGFYDLQAARDEYRLSC 896
++I E T ++K+ +++ L+ EYR
Sbjct: 320 RE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYR--- 372
Query: 897 GAGGLNRDLVWRFM-DVQTRLITPICPHYAEYVW--------RVILKKDGFAVK---AGW 944
+ L F I +W V++ K
Sbjct: 373 ---KMFDRLSV-FPPSA------HIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQ 420
Query: 945 P---TYGTPDLILKSANKYLQDSIVLMRKLLQK-QILGSKKANKKGAPV----------- 989
P T P + L+ K L++ L R ++ I + ++ P
Sbjct: 421 PKESTISIPSIYLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 990 ----ATLTE-DKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSV 1044
E L +V+++ R L+ K S + G IL LQ
Sbjct: 480 HLKNIEHPERMTLFRMVFLD----------FRFLEQKIRHDSTAWNASGSILNTLQ---- 525
Query: 1045 GQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGL 1101
Q +K ++ + + + LD E + + DL+ ++ L
Sbjct: 526 -QLKFYKP-------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL--RIAL 572
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 57.9 bits (141), Expect = 1e-08
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSL 800
G + +N EKMSKS GN ++++A++E + R+ L
Sbjct: 260 AGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFL 296
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 57.6 bits (140), Expect = 1e-08
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRF 798
+G +M++ EKMSKS GNF T++ ++ + A+ R+
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRY 291
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 58.0 bits (141), Expect = 1e-08
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
IE+K +WEE A P K + FPY +G LH+GH +++ +
Sbjct: 8 AIEAKWQRFWEEKGFMKA-----KDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVL 62
Query: 131 AAYHRLKGANVLLPFGFHCTGMP 153
A + R++G VL P G+ G+P
Sbjct: 63 ARFRRMQGYEVLHPMGWDAFGLP 85
Score = 46.4 bits (111), Expect = 5e-05
Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 26/188 (13%)
Query: 771 SEKMSKSTGNFRTLKQAIEEFSADATR-FSLADA---------GDGVDDAN-FVFDTANT 819
MSKS GN + ++E AD R L A +GV A F
Sbjct: 635 PAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRF------- 687
Query: 820 GILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK 879
+ R+ + +A E L S + DR +++ ++ + + F A+
Sbjct: 688 -LNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAI- 745
Query: 880 TGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFA 939
+ A EYR + R + + +++ P PH AE +W D
Sbjct: 746 AALMEFLNALYEYRKDRPVTPVYRTAIRYY----LQMLFPFAPHLAEELWH-WFWPDSL- 799
Query: 940 VKAGWPTY 947
+AGWP
Sbjct: 800 FEAGWPEL 807
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 57.3 bits (138), Expect = 2e-08
Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 23/190 (12%)
Query: 703 YPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR-HWPRGF 761
+ L E E + P D+ V GKD+++ H IY ++S P+
Sbjct: 256 LRVDESGKEVSLVDDFNELERF-PADVHVIGKDILKFH---AIYWPAFLLSAGLPLPKKI 311
Query: 762 RCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVF------- 814
+G + +K+SKS GN + EEF DA ++ L DD ++
Sbjct: 312 VAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARL 371
Query: 815 --DTANT-GIL--RLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY 869
+ A+T G L R T + + T D I D +Y
Sbjct: 372 NGELADTLGNLVMRCTSAKINVNGEWPSPA------AYTEEDESLIQLIKDLPGTADHYY 425
Query: 870 KNYMFREALK 879
++A+
Sbjct: 426 LIPDIQKAII 435
Score = 37.3 bits (86), Expect = 0.029
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 94 PPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTG-- 151
P + + + FF P Y+N H+GH +S + YHR+KG V TG
Sbjct: 2 PGSMKVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFA-----LTGTD 56
Query: 152 ---MPIKASADKLAREIKQF 168
+ +A + F
Sbjct: 57 EHGQKVAEAAKQKQVSPYDF 76
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 56.9 bits (138), Expect = 3e-08
Identities = 50/303 (16%), Positives = 85/303 (28%), Gaps = 100/303 (33%)
Query: 733 GKDLIQNHLTFCIYNHTAIMSQRHWP-----RGFR------CNGHIMLNSEKMSKSTGNF 781
GKD +Y + WP FR +G++ +N KMSKS G F
Sbjct: 307 GKD---I-----VYFLSLF-----WPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTF 353
Query: 782 RTLKQAIEEFSADATRFSL-ADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESS 840
+ F AD+ R+ A +DD + + V V +
Sbjct: 354 IKASTWLNHFDADSLRYYYTAKLSSRIDDIDL----------------NLEDFVQRVNAD 397
Query: 841 L---------RTG----------PPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTG 881
+ R S AD A E+ + +++ F +A++
Sbjct: 398 IVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREI 457
Query: 882 F--------Y------------DLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPIC 921
Y + + A + S G L R L + P+
Sbjct: 458 MALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGI-NLFRVL--------MTYLKPVL 508
Query: 922 PHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKK 981
P E + W P + L ++ +Q+ +
Sbjct: 509 PKLTERAEAF------LNTELTWDGIQQPL-----LGHKVNPFKALYNRIDMRQVEALVE 557
Query: 982 ANK 984
A+K
Sbjct: 558 ASK 560
Score = 34.1 bits (79), Expect = 0.27
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 110 PYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCT----GMPIKASADKL 161
PY NG +HLGH + + Y R++G V F C G PI A +L
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVN----FICADDAHGTPIMLKAQQL 78
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 56.8 bits (138), Expect = 3e-08
Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 34/219 (15%)
Query: 773 KMSKSTGNFRTLKQAIEEFSADATRFSLAD-AGDGVDDANFVFDTANTGILR--LTK--- 826
KMSKS GN + +E + ADA RF+L A G D D + R K
Sbjct: 528 KMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQD---IRLDLRWLEMARNFANKLYN 584
Query: 827 ----EIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGF 882
+ E A E + T ADR + ++ VE Y+ +A +
Sbjct: 585 AARFVLLSREGFQAKEDTP------TLADRFMRSRLSRGVEEITALYEALDLAQAARE-V 637
Query: 883 YDLQAARDEY----------RLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVI 932
Y+L E+ L + + V +L+ P+ P +++ +
Sbjct: 638 YEL--VWSEFCDWYLEAAKPALK-AGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQAL 694
Query: 933 LKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKL 971
K+ A+ WP G D + A + L+ ++ +R L
Sbjct: 695 TGKEELAL-EAWPEPGGRDEEAERAFEALKQAVTAVRAL 732
Score = 42.9 bits (102), Expect = 6e-04
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNF----PFPYMNGYLHLGHAFSFSK 126
+E K W ++ +PP F P P + G LH+GHA S
Sbjct: 11 SVEPKWAEKWAKNPFVANPKSGKPP-----------FVIFMPPPNVTGSLHMGHALDNSL 59
Query: 127 LEFAAAYHRLKGANVL-LP 144
+ Y R++G + LP
Sbjct: 60 QDALIRYKRMRGFEAVWLP 78
Score = 30.2 bits (69), Expect = 4.4
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 342 PLEGKKVYLAAATLRPETMYGQT 364
+EG ++ AT+RPET++
Sbjct: 203 EVEGGG-FIEIATVRPETVFADQ 224
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 56.4 bits (137), Expect = 5e-08
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
EIESKV W+E F ES EK++ PY +G LH+GH +++ +
Sbjct: 29 EIESKVQLHWDEKRTF------EVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVI 82
Query: 131 AAYHRLKGANVLLPFGFHCTGMP 153
A Y R+ G NVL P G+ G+P
Sbjct: 83 ARYQRMLGKNVLQPIGWDAFGLP 105
Score = 43.7 bits (104), Expect = 3e-04
Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 27/190 (14%)
Query: 770 NSEKMSKSTGNFRTLKQAIEEFSADATR-FSLADA---------GDGVDDAN-FVFDTAN 818
KMSKS N + +E + AD R F + + GV+ AN F+
Sbjct: 636 GMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFL----- 690
Query: 819 TGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAV-EMTDQHYKNYMFREA 877
+ +L E +V A+ T + +++ + ++TD + F A
Sbjct: 691 KRVWKLVYEHTAKGDVAALNVDALTE-----NQKALRRDVHKTIAKVTDDIGRRQTFNTA 745
Query: 878 LKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDG 937
+ +L + G +R L+ + R++ P PH +W+ LK +G
Sbjct: 746 I-AAIMELMNKLAKAP---TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQE-LKGEG 800
Query: 938 FAVKAGWPTY 947
A WP
Sbjct: 801 DIDNAPWPVA 810
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 55.7 bits (135), Expect = 6e-08
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRF 798
++++ KMSKS GNF T+K ++ FS R+
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRY 325
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-07
Identities = 91/580 (15%), Positives = 162/580 (27%), Gaps = 234/580 (40%)
Query: 7 NSIS----NISKQSIKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKS 62
++ S +S S++ L + + A + L F++ TE
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTAS--------FFIASQ---LQEQFNKILPEPTE---G 47
Query: 63 FARRDRLLEIESKVHTWWEESNVF------NAEPGERPPNPESGEKFFGNFPFPYMNGYL 116
FA D E + + F EP + + F N YL
Sbjct: 48 FAADD---EPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCYL 96
Query: 117 HLG---HAFSFS-----------KLEFAAAYHRLKGANVLL--PFGFHCTGMPIKASADK 160
G HA + E Y A ++ PF +A +
Sbjct: 97 E-GNDIHALAAKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEG 152
Query: 161 LAREIKQF---GNPPVFLKE-------------------AE--KEESPQPEEA------- 189
A+ + F GN + +E AE E +A
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 190 -------EDPNGGAPLDKFKSKKSKAAAKSG-----VQMYQWEIM-RSFGLSDSEISE-- 234
E+P+ D S S +Q+ + + + G + E+
Sbjct: 213 LNILEWLENPSNTPDKDYLLS-----IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 235 ---------------FQEPEKWLNFFPPLAKEDLK-AFGLGCDWRRSFVTTEINPFFDSF 278
E + W +FF ++ + F +G ++ T + P
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPP----- 321
Query: 279 VQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQP------QDYTLIKMEV 332
I++D ++ EGV P + T E
Sbjct: 322 ------------SILED-------------SLEN----NEGV-PSPMLSISNLTQ---EQ 348
Query: 333 LQPFPAKF---GPLEGKKVYLAAATLR-----------PETMYGQTNAWVLPDGKYGAFE 378
+Q + K P GK+V ++ L P+++YG
Sbjct: 349 VQDYVNKTNSHLP-AGKQVEIS---LVNGAKNLVVSGPPQSLYG---------------- 388
Query: 379 ISETDVLIVTERAALNLAYQNFSRIP---KKPTCLVELTGYDLIGLPLKSPLSFNEVIYA 435
L +T R A + + SRIP +K LP+ SP F+
Sbjct: 389 ------LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-------LPVASP--FHS---- 429
Query: 436 LPMLTILTDKGTGIVTSVPSDAPDDYMALH--DLKAKPAF 473
+L +D + D + ++ + D++ P +
Sbjct: 430 -HLLVPASDL-------INKDLVKNNVSFNAKDIQI-PVY 460
Score = 48.1 bits (114), Expect = 2e-05
Identities = 112/609 (18%), Positives = 177/609 (29%), Gaps = 201/609 (33%)
Query: 620 HG-FEHTLGWL---NQW-ACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKG 674
HG EH L + S+ L + QF + L + T
Sbjct: 13 HGSLEHV--LLVPTASFFIASQ---L-----QE-QFN-KILPEPT--------------- 45
Query: 675 DMYGSTTGSIEPGQMTDEVWEFI-FCGGPY-PESSNIPSSILNRMKQEFEYWYPFDLRVS 732
EP + V +F+ + P +LN EFE Y L
Sbjct: 46 ---EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LE-- 97
Query: 733 GKDLIQNH---LTFCIYNHTAIMSQRHWPRG-FRCNGHIMLNSEKMSKSTGNFRTLKQAI 788
G D+ H N T ++ + + +K S S L +A+
Sbjct: 98 GNDI---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-----LFRAV 149
Query: 789 EEFSAD-ATRFSLADAGDGVDDANF-----VFDTANTGILRLTKEIAWMEEVLAVESSLR 842
E +A F G G D F ++ T + + L K A E L S L
Sbjct: 150 GEGNAQLVAIF----GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA---ETL---SELI 199
Query: 843 TGPPSTYADRVFENEINI------AVEMTDQHYKNYMFREALKTGFYDL------QAARD 890
A++VF +NI D+ Y L + Q A
Sbjct: 200 RTTLD--AEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPISCPLIGVIQLAH- 248
Query: 891 EYRLSCGAGGLN-RDLVWRFMDVQTR---LITPICPHYAEYVWRVILKKDGF---AVKA- 942
Y ++ G +L L+T + + W + F KA
Sbjct: 249 -YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SW------ESFFVSVRKAI 300
Query: 943 ------GWPTYGT-PDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAP-----VA 990
G Y P+ L + L+DS+ N +G P ++
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSI--LEDSL----------------ENNEGVPSPMLSIS 342
Query: 991 TLTEDKLKGLV-YVNEQFDGWKAECLRILQSKFDSKSRTF----APDGEILEALQNS--S 1043
LT+++++ V N K + I S + ++ P + L L +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQ--VEI--SLVNG-AKNLVVSGPP--QSLYGLNLTLRK 395
Query: 1044 VGQASNFKQTQKLCMPF--------LRF-------------------KKD-EAKAIGPQA 1075
S Q++ PF RF KD + A
Sbjct: 396 AKAPSGLDQSRI---PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 1076 LDLKLP-F----GE-IEVLQENL-----DLIKRQ-LGLEEVEILSAT-----DPDALSKA 1118
D+++P + G + VL ++ D I R + E AT P S
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 1119 GSLSSLLKQ 1127
G L+ K
Sbjct: 513 GVLTHRNKD 521
Score = 45.0 bits (106), Expect = 2e-04
Identities = 53/339 (15%), Positives = 105/339 (30%), Gaps = 99/339 (29%)
Query: 840 SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFY-DLQAARDEY----RL 894
S R P T + E+ + + T + L+ F L + +
Sbjct: 5 STR---PLTLSHGSLEHVLLVP---TASFF----IASQLQEQFNKILPEPTEGFAADDEP 54
Query: 895 SCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILK--KDGF-------AVKAGWP 945
+ A +LV +F+ + L+ P + V + L ++ + A+ A
Sbjct: 55 TTPA-----ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 946 TYGTPDL-----ILKSANKYLQDSIVLMRKLLQKQILGS---KKANKKGAPVATL----- 992
L ++K+ Y+ I+ R +K S + + A + +
Sbjct: 110 QENDTTLVKTKELIKN---YITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQG 164
Query: 993 -TEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPD-----GEILEALQNSSVGQ 1046
T+D Y E LR L + + D E L L +++
Sbjct: 165 NTDD------YFEE---------LRDL---YQT-YHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 1047 ASNFKQTQKLCMPFLRFKKDEAKAIGPQALD---LKLPFGEIEVLQ-ENLDLIKRQLGLE 1102
F Q + L + ++ + L + P I V+Q + + + LG
Sbjct: 206 EKVFTQG----LNILEWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFT 259
Query: 1103 EVE--------------ILSATDPDALSKAGSLSSLLKQ 1127
E +++A A+++ S S
Sbjct: 260 PGELRSYLKGATGHSQGLVTAV---AIAETDSWESFFVS 295
Score = 37.7 bits (87), Expect = 0.027
Identities = 58/353 (16%), Positives = 97/353 (27%), Gaps = 137/353 (38%)
Query: 289 MGKIIKDVRYTIYSPLDDQPCADH--DRASGEGVQPQDYTLIKMEVLQPFPAK----FGP 342
MG D+ A +RA ++++ +++ P FG
Sbjct: 1631 MGM---DLY-------KTSKAAQDVWNRADNHFKDTYGFSIL--DIVINNPVNLTIHFGG 1678
Query: 343 LEGKKV---YLAAATLRPETMYGQTNAWVLPDGKYGA---F-EISE--TDVLIVTERAAL 393
+GK++ Y A M +T DGK F EI+E T +E+ L
Sbjct: 1679 EKGKRIRENYSA--------MIFETI----VDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 394 NL-AY-QNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVT 451
+ + Q P L L + L KG
Sbjct: 1727 SATQFTQ--------P-ALT-LMEK---------------AAFED-----LKSKG----- 1751
Query: 452 SVPSDAPDDYMALHDLKAKPAFRAKFGVKDEW--------VLPFEVIPIINIPEFGDKSA 503
+P+DA A H L G E+ V+ E
Sbjct: 1752 LIPADA---TFAGHSL----------G---EYAALASLADVMSIE--------------- 1780
Query: 504 ERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETG 563
+ + RG T + D G+ + ++ +
Sbjct: 1781 -------------------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 564 EAIMYSEPEKRVMSRSGDECVVA---LTDQWYITYGEEEWKRLATECLNSMNL 613
+RV R+G + + +Q Y+ G+ T LN + L
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 54.7 bits (132), Expect = 1e-07
Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 58/198 (29%)
Query: 722 EYWYPFDLRVS-----GKDLIQNHLTFCIY---------NHTAIMSQRHW--PRGFRCNG 765
+YW D + GKD I H I+ + + W P N
Sbjct: 280 KYWLNIDGQTRVIHFIGKDNIPFH---AIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANE 336
Query: 766 HIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLT 825
++ L +K S S + + ++ F AD R+ L D++F
Sbjct: 337 YLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDF------------- 383
Query: 826 KEIAWMEEVLAVESSL---------RT--------------GPPSTYADRVFENEINIAV 862
++ + + + L R DR EI A
Sbjct: 384 ---SFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAF 440
Query: 863 EMTDQHYKNYMFREALKT 880
+ + NY F++ALK
Sbjct: 441 KEVGELIMNYRFKDALKR 458
Score = 32.8 bits (75), Expect = 0.86
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 110 PYMNGYLHLGH---------AFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
PY NG +H GH F Y RLKG +V+ G G PI A K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIF--------VRYLRLKGEDVVFICGTDEHGTPISFRALK 62
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 52.6 bits (127), Expect = 5e-07
Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 41/184 (22%)
Query: 719 QEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-----------RGFRCNGHI 767
+ F ++P DL + GKD+I+ H +Y WP + +G +
Sbjct: 258 ESFRRYWPADLHMIGKDIIRFH---TVY----------WPAFLMSAGLPLPKRIFAHGWL 304
Query: 768 MLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV---------FDTAN 818
+ EKMSKS GN ++ F D R+ L D ++ D AN
Sbjct: 305 LNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLAN 364
Query: 819 T-GIL--RLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFR 875
G L R +A + +++ T D + +E +H+
Sbjct: 365 ELGNLAQRSLSMVAK-----NLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMH 419
Query: 876 EALK 879
AL+
Sbjct: 420 LALE 423
Score = 36.9 bits (86), Expect = 0.039
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 95 PNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM-- 152
+ E F+ Y NG H+GHA+ + + A + RL G +V + TG
Sbjct: 6 HHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDV-----RYLTGTDV 60
Query: 153 ---PIKASADKLAREIKQF 168
+ +A K +
Sbjct: 61 HGQKMAETAAKEGIPAAEL 79
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 52.7 bits (127), Expect = 6e-07
Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 42/199 (21%)
Query: 703 YPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP---- 758
+++ ++ +P D+ V GKD+++ H IY WP
Sbjct: 273 TRVATDGTETLDE--DHHALNRWPADVHVVGKDILKFH---AIY----------WPAFLM 317
Query: 759 -------RGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDAN 811
+G + +K+SKS GN + +EF DA ++ L + DD +
Sbjct: 318 SAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGD 377
Query: 812 FVFDTANTGILRLTKEIAW-----------MEEVLAVESSLRTGPPSTYADRVFENEINI 860
+ + RL E+A + V + +D+ +N
Sbjct: 378 YSDKNM---VARLNGELADTLGNLVSRCVAP--KINVNGMWPEPAEYSESDKTLIASLNN 432
Query: 861 AVEMTDQHYKNYMFREALK 879
D +Y + AL
Sbjct: 433 LAGTVDHYYCLPDIQHALI 451
Score = 39.2 bits (92), Expect = 0.007
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 90 PGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHC 149
+ P + + + FF P Y+N H+GH +S ++ YHR+KG V +
Sbjct: 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFV-----M 69
Query: 150 TG-----MPIKASADKLAREIKQF 168
TG + +A K F
Sbjct: 70 TGTDEHGQKVAEAAAKQGVSPMDF 93
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 51.5 bits (124), Expect = 1e-06
Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 32/176 (18%)
Query: 720 EFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-----------RGFRCNGHIM 768
+ E ++P DL + GKD+++ H +Y WP + +G
Sbjct: 244 KVEIYWPADLHLVGKDILRFH---TVY----------WPAFLMSLGYELPKKVFAHGWWT 290
Query: 769 LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEI 828
+ +KMSK+ GN + ++E+ D R+ L D +F + R+ E+
Sbjct: 291 VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI---LNRINGEL 347
Query: 829 AW-----MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK 879
A V+ + G S D + +++ + + + F +A++
Sbjct: 348 ANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYMEKVNFYKAIE 403
Score = 36.0 bits (84), Expect = 0.072
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM-----PIKASADKLA 162
P Y+N HLGHA++ + A Y+RL+ +V F TG I+ A++L
Sbjct: 12 PIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDV-----FFLTGTDEHGLKIQKKAEELG 66
Query: 163 REIKQF 168
K+
Sbjct: 67 ISPKEL 72
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 51.1 bits (123), Expect = 2e-06
Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 41/185 (22%)
Query: 718 KQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-----------RGFRCNGH 766
E ++P + + GKD+ + H +Y WP + +G
Sbjct: 268 TDERWAYWPANAHIIGKDISRFH---AVY----------WPAFLMSAQLPLPKRVFAHGF 314
Query: 767 IMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFV---------FDTA 817
+ EKMSKS GN + +E + D R+ L D ++ D A
Sbjct: 315 LFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLA 374
Query: 818 NT-GIL--RLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMF 874
N G L R IA E + + AD+ ++ + A+E + +
Sbjct: 375 NDLGNLAQRSLSMIAKN-----CEGKVPQPGAFSEADKAILDQADAALETARKAMDDQAL 429
Query: 875 REALK 879
AL
Sbjct: 430 HLALG 434
Score = 39.6 bits (93), Expect = 0.006
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 87 NAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFG 146
E + P S EK++ Y NG H+GHA+ + A + RL G +V
Sbjct: 11 TLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDV----- 65
Query: 147 FHCTGM-----PIKASADKLAREIKQF 168
+ TG + SA K +
Sbjct: 66 YFLTGTDEHGIKMLQSARKEGITPRDL 92
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 48.8 bits (117), Expect = 7e-06
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 764 NGHIMLNSEKMSKSTGNFRTLKQAIEE-FSADATRFSLADA 803
G I + KMSKS GN + Q + A R L
Sbjct: 282 TGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG 322
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 46.1 bits (110), Expect = 5e-05
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 33/178 (18%)
Query: 719 QEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWP-----------RGFRCNGHI 767
+ + ++P + GKD+++ H ++ WP R G +
Sbjct: 244 EAYRTFWPHAWHLIGKDILKPH---AVF----------WPTMLKAAGIPMYRHLNVGGFL 290
Query: 768 -MLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTK 826
+ KMSK+ GN +E++ DA R+ L D + R
Sbjct: 291 LGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEAL---RTRYEA 347
Query: 827 EIAW-----MEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALK 879
++A ++ A+ G E + F AL+
Sbjct: 348 DLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALE 405
Score = 36.4 bits (85), Expect = 0.059
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 108 PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGM-----PIKASADKLA 162
P Y+N HLGHA++ +F A +HRL G F TG + +A
Sbjct: 10 PIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRT-----FFLTGTDEHGETVYRAAQAAG 64
Query: 163 REIKQF 168
+ K F
Sbjct: 65 EDPKAF 70
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 46.0 bits (110), Expect = 8e-05
Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 50/203 (24%)
Query: 763 CNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD----------GVDDA- 810
C+G I+ +KMSKS GN I +F ADA R+ + + V +
Sbjct: 580 CHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV 639
Query: 811 --------N-FVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIA 861
N + F + R + E DR +
Sbjct: 640 RDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEM------------DRWLLARMQDL 687
Query: 862 VEMTDQHYKNYMFREALK----------TGFYDLQAARDEYRLSCGAGGLNR----DLVW 907
++ + + Y + + + +Y ++ R R L+R ++
Sbjct: 688 IQRVTEALEAYDPTTSARALRDFVVEDLSQWY-VRRNRR--RFWKNEDALDREAAYATLY 744
Query: 908 RFMDVQTRLITPICPHYAEYVWR 930
+ + L P P AE +W+
Sbjct: 745 EALVLVATLAAPFTPFLAEVLWQ 767
Score = 45.2 bits (108), Expect = 1e-04
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 29/116 (25%)
Query: 69 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPF----PYMNGYLHLGHAFS- 123
++E +V +W+ +F R P + P NG H+GHA +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPR--------YTVYEGPPTANGLPHVGHAQAR 61
Query: 124 -----FSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL-----AREIKQFG 169
F + Y ++G G+ G+P++ +K REI+ +G
Sbjct: 62 SYKDLFPR------YKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYG 111
Score = 31.4 bits (72), Expect = 2.2
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query: 535 EGTMLVGDFAGKKVQDAKPLIRSKLIETG-----EAIMYSEP-----EKRVMSRSGDECV 584
EG +LV F G ++A I L G E+ ++S P +M +
Sbjct: 346 EGKLLVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYA----- 400
Query: 585 VALTDQWYI 593
T+ W+I
Sbjct: 401 ---TESWFI 406
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 43.8 bits (104), Expect = 3e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 773 KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFD 815
KMSK GNF + ++E +DA R+ D + FD
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALRYIFLSKK---CDTHLEFD 324
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.007
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 14 KQSIK---SSLSL-ALSLLRQSAPFLHRNA 39
KQ++K +SL L A SAP L A
Sbjct: 19 KQALKKLQASLKLYA----DDSAPALAIKA 44
Score = 31.5 bits (70), Expect = 0.78
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 1019 QS--KFDSKSRTFAPDGEILEALQ-NSSV 1044
Q+ K + + +A D AL +++
Sbjct: 20 QALKKLQASLKLYADDSA--PALAIKATM 46
Score = 31.5 bits (70), Expect = 0.89
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 282 QMRKLKSMGKIIKDVRYTIYSPLDDQP 308
++KL++ +Y+ D P
Sbjct: 21 ALKKLQA--------SLKLYAD-DSAP 38
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 32.8 bits (76), Expect = 0.24
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 342 PLEGKKVYLAAATLRPETMYGQTNAWVLPD 371
+EG ++ AT+RPET++ V P+
Sbjct: 12 EVEGGG-FIEIATVRPETVFADQAIAVHPE 40
>1pgl_1 Bean POD mottle virus small (S) subunit; comovirus, viral coat
protein, bean POD mottle virus (BPMV), icosahedral
virus, virus/RNA complex; 2.80A {Bean-pod mottle virus}
SCOP: b.121.4.2 PDB: 1pgw_1 1bmv_1
Length = 185
Score = 32.9 bits (74), Expect = 0.33
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 780 NFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVES 839
NF + KQ+ +FS D ++ G +++ N+ I L + AW + L V+
Sbjct: 19 NFDSSKQSFCQFSVDLLGGGISVDKTG----DWITLVQNSPISNLLRVAAWKKGCLMVKV 74
Query: 840 SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFR 875
+ +D ++ + + +H+ +
Sbjct: 75 VMSGNAAVKRSDWASLVQVFLTNSNSTEHFDACRWT 110
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 32.1 bits (74), Expect = 0.60
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 535 EGTMLVGDFAGKKVQDAKPLIRSKLIETG 563
EG +LV F G ++A I L G
Sbjct: 147 EGKLLVEPFKGLYFREANRAILRDLRGRG 175
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 33.0 bits (76), Expect = 0.66
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 107 FPFPYMNGYLHLGHAFS 123
FP P NGYLH+GHA S
Sbjct: 31 FP-PEPNGYLHIGHAKS 46
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 32.9 bits (75), Expect = 0.73
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 107 FPFPYMNGYLHLGHAFS 123
FP P +GY HLGH F+
Sbjct: 71 FP-PDPSGYAHLGHVFA 86
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 32.9 bits (76), Expect = 0.84
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 25/115 (21%)
Query: 851 DRVFENEINIAVEMTDQHYKNYMFREALKT----------GFY-----DLQ---AARDEY 892
DR N + T +Y+N+ + + FY D+
Sbjct: 678 DRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHI 737
Query: 893 RLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAV-KAGWPT 946
R S + ++++ + T+L+ PI H AE VW +V A P
Sbjct: 738 RRSM------QTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPK 786
Score = 30.6 bits (70), Expect = 3.6
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 19/100 (19%)
Query: 370 PDGKYGAFEISETDVLIVTERAALNLAYQNFSRI---PKKPTCLVELTGYDLIGLPLKSP 426
P+ KYG + ++ + I+ A L+ + E TG +L + + P
Sbjct: 247 PELKYGQYNVNG-EKYII----AEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHP 301
Query: 427 LSFNEVIYALPMLTIL-----TDKGTGIVTSVPSDAPDDY 461
L I TD GTG V + P DDY
Sbjct: 302 F------LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDY 335
Score = 30.6 bits (70), Expect = 4.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 110 PYMNGYLHLGHAFSFSKL--EFAAAYHRLKGANVLLPF--GFHCTGMPI 154
PY NG LH+GHA +K+ +F Y ++G P+ G+ G+PI
Sbjct: 57 PYANGNLHMGHA--LNKILKDFIVRYKTMQGFYA--PYVPGWDTHGLPI 101
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 31.5 bits (72), Expect = 1.8
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 15/30 (50%)
Query: 94 PPNPESGEKFFGNFPFPYMNGYLHLGHAFS 123
PNP +G LH+GHA +
Sbjct: 102 APNP---------------SGPLHIGHARA 116
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant,
potato, mitochondria, DNA binding protein; 1.75A
{Solanum tuberosum} PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A*
3n1j_A* 3n1k_A* 3n1l_A*
Length = 178
Score = 30.2 bits (67), Expect = 2.4
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 158 ADKLAREIKQFGNPPVF-LKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQM 216
AD RE + F VF A E P +GG L++ G +
Sbjct: 2 ADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERK 61
Query: 217 YQWEIMRSFGLSDSEISEF--QEPEKWLNFF 245
Y WE + F LS +E+ FF
Sbjct: 62 YDWEKRQLFALSATEVGSLISMGTRDSSEFF 92
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix
bundle, carboxylate bridge, metalloenzyme,
oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri}
SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A*
3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A*
3n1y_A* 3rnb_A 3rng_A 3rna_A
Length = 491
Score = 30.4 bits (68), Expect = 3.6
Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 15/103 (14%)
Query: 602 RLATECLN-SMNLYHDENRHGFEHTLGWLNQWACS--RSFGLGTRIPWDP-------QFL 651
R L + + H N+WA RSF + D F
Sbjct: 135 RHGQIQLYFPYANVKRSRKWDWAHKAIHTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFA 194
Query: 652 VESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVW 694
E+ + ++ A T S+ TDE
Sbjct: 195 FETGFTNMQFLGLAADAAEAG-----DHTFASLISSIQTDESR 232
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 29.4 bits (65), Expect = 8.5
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 593 ITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWL-----NQWACSRSFGLGTRIPWD 647
I Y ++++ L ECL + L+ D H+LG+ + + T + +
Sbjct: 25 IKYLNQDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSN 84
Query: 648 PQFLVESLSDSTI 660
PQF+V+ + + I
Sbjct: 85 PQFIVDGATRTDI 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,735,138
Number of extensions: 1101420
Number of successful extensions: 2352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 77
Length of query: 1142
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1038
Effective length of database: 3,798,009
Effective search space: 3942333342
Effective search space used: 3942333342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)