RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 039882
(1142 letters)
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 91.6 bits (226), Expect = 1e-19
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
IE+K +WEE A+ P K + FPY +G LH+GH +++ +
Sbjct: 8 AIEAKWQRFWEEKGFMKAKD-----LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVL 62
Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQF 168
A + R++G VL P G+ G+P + +A K K +
Sbjct: 63 ARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDW 100
Score = 36.9 bits (84), Expect = 0.014
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 771 SEKMSKSTGNFRTLKQAIEEFSADATRF 798
MSKS GN + ++E AD R
Sbjct: 443 PAVMSKSKGNGVMVGPFVKEQGADIARI 470
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 87.7 bits (216), Expect = 1e-18
Identities = 53/390 (13%), Positives = 108/390 (27%), Gaps = 26/390 (6%)
Query: 62 SFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHA 121
F R L E ++ W+ + ++ + N F + PY NG LH+GHA
Sbjct: 13 DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNE----TFILHDGPPYANGNLHMGHA 68
Query: 122 FSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKE 181
+ +F Y ++G G+ G+PI+ K+ + +E
Sbjct: 69 LNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIE------QALTKKGVDRKKMSTAEFRE 122
Query: 182 ESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKW 241
+ + + + + ++ ++ + +K
Sbjct: 123 KCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKP 182
Query: 242 LNFFPPLAKEDLKAFGLGCDWRRS-----FVTTEINPFFDSFVQWQMRKLKSMGKIIKDV 296
+ + P +A R+ F T S V+ + +
Sbjct: 183 VYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW 242
Query: 297 RYT-IYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATL 355
T IY+ + D+ R GV + E++ + + +
Sbjct: 243 GKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWF 302
Query: 356 RPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTG 415
E + P G F ETD++ V + + +R + L G
Sbjct: 303 EREAKDLLPEGFTHPGSPNGTFT-KETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEG 361
Query: 416 YDLIGLPLKSPLSFNEVIYALPMLTILTDK 445
D ++
Sbjct: 362 SDQY---------RGWFNSSITTSVATRGV 382
Score = 71.5 bits (174), Expect = 2e-13
Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 14/259 (5%)
Query: 561 ETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRH 620
+ ++ +E E R+ + T QW+ + + L + + + R
Sbjct: 188 SSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTR- 246
Query: 621 GFEHTLGWLNQWACSRSFGLGTRIP----WDPQFLVESLSDSTIYMAY--YTVAHMLHKG 674
+ + +W SR G +P + + ++ + + + + + +
Sbjct: 247 -IYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFERE 305
Query: 675 DMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGK 734
G PG + + +S + +L E +P D+ + G
Sbjct: 306 AKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE---TRPELSFPADMYLEGS 362
Query: 735 DLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSA 793
D + I A + + +G +M +KMSKS GN Q +++ A
Sbjct: 363 DQYRGWFNSSITTSVATRGVSPY-KFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGA 421
Query: 794 DATRFSLADAGDGVDDANF 812
D R ++ D + D
Sbjct: 422 DIARLWVSST-DYLADVRI 439
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 85.8 bits (211), Expect = 5e-18
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 69 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLE 128
++E +V +W+ +F R P ++ P NG H+GHA + S +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGP----RYTVYEGPPTANGLPHVGHAQARSYKD 65
Query: 129 FAAAYHRLKGANVLLPFGFHCTGMPIKASA 158
Y ++G G+ G+P++
Sbjct: 66 LFPRYKTMRGYYAPRRAGWDTHGLPVELEV 95
Score = 61.5 bits (148), Expect = 3e-10
Identities = 45/245 (18%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 578 RSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRS 637
R + T+ W+I + + + H + E L WA SR+
Sbjct: 202 RCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKN-LVDWALSRN 260
Query: 638 FGLGTRIPW------DPQFLVESLSDSTIYMAYYT-VAHMLHKGDMYGSTTGSIEPGQMT 690
GT +P + + S + H+ + G M
Sbjct: 261 RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320
Query: 691 DE--VWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNH 748
V + + G P +S ++ F +P D G D +
Sbjct: 321 RVPYVIDVWYDSGAMPFASLHYP---FEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLG 377
Query: 749 TAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGV 807
+ + C+G I+ +KMSKS GN I +F ADA R+ + +
Sbjct: 378 VMLFGSIAFKNVI-CHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE 436
Query: 808 DDANF 812
D F
Sbjct: 437 ADRRF 441
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 81.9 bits (201), Expect = 8e-17
Identities = 45/247 (18%), Positives = 83/247 (33%), Gaps = 15/247 (6%)
Query: 567 MYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTL 626
S+ E SR G A+ QW++ + L + + + L
Sbjct: 182 TLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWL 241
Query: 627 GWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEP 686
+ W SR G +IP ++++ G +
Sbjct: 242 ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFD 301
Query: 687 GQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIY 746
+ +W G P ++ + +YP D+ V+G D++ ++
Sbjct: 302 TWFSSALWPLSTLGWPEE-------------TEDLKAFYPGDVLVTGYDILFLWVSRMEV 348
Query: 747 NHTAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGD 805
+ M +R + +G ++ +KMSKS GN + +E + ADA RF+L
Sbjct: 349 SGYHFMGERPFKTVL-LHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLAT 407
Query: 806 GVDDANF 812
G D
Sbjct: 408 GGQDIRL 414
Score = 80.4 bits (197), Expect = 3e-16
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 71 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
+E K W ++ F P P + G LH+GHA S +
Sbjct: 11 SVEPKWAEKWAKNPFV-------ANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDAL 63
Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 163
Y R++G + G G+ + ++L
Sbjct: 64 IRYKRMRGFEAVWLPGTDHAGIATQVVVERLLL 96
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 68.9 bits (167), Expect = 8e-13
Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 26/240 (10%)
Query: 576 MSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACS 635
+ G + +YI + L + L W+ +
Sbjct: 138 FAICGRPISFRDSAHYYIKMQDFAE------RLKRWIEKQPWKPNVKNMVLSWIEEGLEE 191
Query: 636 RSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWE 695
R+ + + W + + G + +IE + + E
Sbjct: 192 RA--ITRDLNWGIPVPL-------DEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNE 242
Query: 696 FIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR 755
+ + + I ++P L + + Y + ++
Sbjct: 243 WKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFL-----------MAYGKYKDEEVEAEW 291
Query: 756 HWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFD 815
+ P N ++ L +K S S + + ++ F AD R+ L D++F F
Sbjct: 292 NLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFS 351
Score = 62.3 bits (150), Expect = 1e-10
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 102 KFFGNFPFPYMNGYLHLGH-AFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
++ PY NG +H GH A ++ + Y RLKG +V+ G G PI A K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 161 LAREIKQF 168
R ++
Sbjct: 63 EGRSPREI 70
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 66.9 bits (162), Expect = 3e-12
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 676 MYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKD 735
+G + + I G + + ++ + + GKD
Sbjct: 199 YFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKD 258
Query: 736 LIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADA 795
++ H + S P +G++ +N KMSKS G F + F AD+
Sbjct: 259 IVYFH--SLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 316
Query: 796 TRFSL-ADAGDGVDDANFVFD 815
R+ A +DD + +
Sbjct: 317 LRYYYTAKLSSRIDDIDLNLE 337
Score = 62.2 bits (150), Expect = 1e-10
Identities = 19/67 (28%), Positives = 26/67 (38%)
Query: 102 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 161
K PY NG +HLGH + + Y R++G V G PI A +L
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62
Query: 162 AREIKQF 168
+Q
Sbjct: 63 GITPEQM 69
Score = 34.5 bits (78), Expect = 0.070
Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 4/93 (4%)
Query: 232 ISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGK 291
PE+ + + D G + T + +LK G
Sbjct: 60 QQLGITPEQMIGEMSQEHQTDFA--GFNISYDNYHSTHS--EENRQLSELIYSRLKENGF 115
Query: 292 IIKDVRYTIYSPLDDQPCADHDRASGEGVQPQD 324
I +Y P D SG +D
Sbjct: 116 IKNRTISQLYDPEKGMFLPDRFVVSGATPVMRD 148
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 60.7 bits (146), Expect = 3e-10
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 691 DEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTA 750
E G P S++ + FD+ G DL+ H I T
Sbjct: 190 GEPSWPSPWGAGRPGWHIECSAMNCKQLGN-----HFDIHGGGSDLMFPHHENEIAQST- 243
Query: 751 IMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSL 800
+ + +G +M++ EKMSKS GNF T++ ++ + A+ R+ L
Sbjct: 244 CAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFL 293
Score = 32.6 bits (73), Expect = 0.27
Identities = 19/203 (9%), Positives = 47/203 (23%), Gaps = 20/203 (9%)
Query: 110 PYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFG 169
+ H+GH +F + A Y R G + I IK+
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI----------IKRAN 79
Query: 170 NPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSD 229
+ + D D ++ +++ + I +
Sbjct: 80 ENGESFVAMVDRMIAEMHKDFDALNILRPDME--PRATHHIAEIIELTEQLIAKGHAYVA 137
Query: 230 SEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSM 289
+ D ++ ++ + + + + K+
Sbjct: 138 DNGDVMFDVPTD--------PTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKE 189
Query: 290 GKIIKDVRYTIYSPLDDQPCADH 312
G+ + P C+
Sbjct: 190 GEPSWPSPWGAGRPGWHIECSAM 212
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 60.8 bits (146), Expect = 3e-10
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 101 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADK 160
+ F+ P Y+N HLGHA++ +F A +HRL G G G + +A
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA 62
Query: 161 LAREIKQF 168
+ K F
Sbjct: 63 AGEDPKAF 70
Score = 59.3 bits (142), Expect = 1e-09
Identities = 24/204 (11%), Positives = 47/204 (23%), Gaps = 3/204 (1%)
Query: 609 NSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVA 668
+ HG + + + +
Sbjct: 136 EKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAM-- 193
Query: 669 HMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFD 728
GD+ S S P + E + N S++ + + ++P
Sbjct: 194 LAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA 253
Query: 729 LRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAI 788
+ I + + + KMSK+ GN +
Sbjct: 254 WHL-IGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALL 312
Query: 789 EEFSADATRFSLADAGDGVDDANF 812
E++ DA R+ L D
Sbjct: 313 EKYGRDALRYYLLREIPYGQDTPV 336
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 58.6 bits (140), Expect = 1e-09
Identities = 22/210 (10%), Positives = 42/210 (20%), Gaps = 6/210 (2%)
Query: 598 EEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSD 657
+ A + ++ + S + + +
Sbjct: 96 GCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKY 155
Query: 658 STIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSS----I 713
I + E + C + +I S
Sbjct: 156 REIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLR 215
Query: 714 LNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSE- 772
+ D +GKD + ++ + + +
Sbjct: 216 WRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQK 275
Query: 773 -KMSKSTGNFRTLKQAIEEFSADATRFSLA 801
KMS S GN L E RF A
Sbjct: 276 GKMSGSKGNVILLSDLYEVLEPGLVRFIYA 305
Score = 37.4 bits (85), Expect = 0.008
Identities = 18/200 (9%), Positives = 39/200 (19%), Gaps = 6/200 (3%)
Query: 97 PESGEKFFGNF-PFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIK 155
E GEK +GY+H+G+ R KG V + K
Sbjct: 12 RERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRK 71
Query: 156 ASADKLAREIKQFG-----NPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAA 210
+ G P + E + E+
Sbjct: 72 VPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKR 131
Query: 211 KSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTE 270
+ + + + + + ++ +
Sbjct: 132 GEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGW 191
Query: 271 INPFFDSFVQWQMRKLKSMG 290
+ ++S
Sbjct: 192 KVKYKCPEGHEGWVDIRSGN 211
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 43.0 bits (100), Expect = 5e-05
Identities = 38/224 (16%), Positives = 64/224 (28%), Gaps = 51/224 (22%)
Query: 342 PLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFS 401
P+EGK+V + T RP+T++G T + P+ + V
Sbjct: 10 PVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIE 69
Query: 402 RIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDY 461
R +G +P E I +L GTG + +VP+ DY
Sbjct: 70 R-----QAEGREKTGVFLGAYALNPA-TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDY 123
Query: 462 MALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKL 521
+PI + E +
Sbjct: 124 EFAR---------------------KFGLPIKKVIERPGEPLPEPLER------------ 150
Query: 522 AEAKRLTYLRGFTEGTMLV--GDFAGKKVQDAKPLIRSKLIETG 563
+ E ++V G F G + ++ K + + L E G
Sbjct: 151 ----------AYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKG 184
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 31.9 bits (71), Expect = 0.29
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 336 FPAKFGP-LEGKKVYLAAATLRPETMYGQTNAWVLPD 371
FP K L +K L T P T+ G A V P+
Sbjct: 7 FPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPE 43
Score = 29.2 bits (64), Expect = 2.0
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 536 GTMLVGDFAGKKVQDAKPLIRSKLIETG 563
G +LV F G ++A I L G
Sbjct: 145 GKLLVEPFKGLYFREANRAILRDLRGRG 172
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK
{Synechococcus elongatus [TaxId: 32046]}
Length = 58
Score = 28.4 bits (64), Expect = 0.59
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 90 PGERPPNPESGEKFFGNFPFPYMNGYLHLGH 120
G+ P P + F F P + GH
Sbjct: 18 RGKGPGLPIALPALFEGFGLPELLATTSFGH 48
>d1pgl11 b.121.4.2 (1:1-185) Comovirus coat proteins (VP37 and VP23)
{BPMV (Bean pod mottle virus) [TaxId: 12260]}
Length = 185
Score = 29.8 bits (67), Expect = 1.1
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 780 NFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVES 839
NF + KQ+ +FS D ++ G +++ N+ I L + AW + L V+
Sbjct: 19 NFDSSKQSFCQFSVDLLGGGISVDKTG----DWITLVQNSPISNLLRVAAWKKGCLMVKV 74
Query: 840 SLRTGPPSTYADRVFENEINIAVEMTDQHY 869
+ +D ++ + + +H+
Sbjct: 75 VMSGNAAVKRSDWASLVQVFLTNSNSTEHF 104
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 29.4 bits (65), Expect = 2.9
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 21/160 (13%)
Query: 117 HLGHAFSFSKLEFAA-AYH-----RLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGN 170
H GH ++ A +H ++K V HC G + ++L R+ +
Sbjct: 79 HFGH------IDLAKPVFHVGFIAKIK--KVCECVCMHC-GKLLLDEHNELMRQALAIKD 129
Query: 171 PPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQ------MYQWEIMRS 224
+ D + S+ + ++ + W+ R+
Sbjct: 130 SKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRA 189
Query: 225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRR 264
G +D E+ LN F ++ +D + G + R
Sbjct: 190 TGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSR 229
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 29.1 bits (64), Expect = 3.1
Identities = 23/210 (10%), Positives = 51/210 (24%), Gaps = 21/210 (10%)
Query: 588 TDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPW- 646
T + + ++A + IP
Sbjct: 130 TMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGL 189
Query: 647 -DPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPE 705
DP F++ + + Y A G + G E + + P E
Sbjct: 190 EDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENP-----YYPGLRTSAPEGE 244
Query: 706 SSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNG 765
+ + + + +R + L ++
Sbjct: 245 AYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHL--------------AYE 290
Query: 766 HIMLNSEKMSKSTGNFRTLKQAIEEFSADA 795
++L +MS G ++ + +EE + A
Sbjct: 291 TVLLEGRQMSGRKGLAVSVDEVLEEATRRA 320
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 29.1 bits (64), Expect = 3.1
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 684 IEPGQMTDEVWEFI--------FCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKD 735
++PG T E+ P S+ + + + P D ++
Sbjct: 30 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDG 89
Query: 736 LIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIM 768
I N I + + + + G
Sbjct: 90 DIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 122
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395
{Pseudomonas syringae [TaxId: 317]}
Length = 258
Score = 28.8 bits (64), Expect = 3.3
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 1091 NLDL---IKRQLGLEEVEILSATDPD-------ALSKAGS--LSSLLKQNPP 1130
+L+L +++ G+ +V ++ AT+PD A+ A + L + L
Sbjct: 4 HLELETRLQKMYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSLSAQDH 55
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Length = 312
Score = 29.2 bits (65), Expect = 3.3
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 1012 AECLRILQSKFDSKSRTFAPDGEILEALQNSSV 1044
+E + + +S ++ R + P+ L+AL+NS++
Sbjct: 16 SEVVSLYKSNNIARMRLYDPNQAALQALRNSNI 48
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 29.0 bits (64), Expect = 3.5
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 107 FPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPF 145
FP P NGYLH+GHA S + L F
Sbjct: 24 FP-PEPNGYLHIGHAKSIC---LNFGIAQDYKGQCNLRF 58
>d1l3aa_ d.18.1.2 (A:) Plant transcriptional regulator PBF-2 {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 166
Score = 27.9 bits (62), Expect = 5.0
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 186 PEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEF--QEPEKWLN 243
PE + +G L + + A +GV+ Y W + F LS +EI +
Sbjct: 24 PEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCE 83
Query: 244 FF--PPLAKEDLKA 255
FF P + D
Sbjct: 84 FFHDPNKGRSDEGR 97
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 28.2 bits (62), Expect = 5.1
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 107 FPFPYMNGYLHLGHAFSF 124
P G H+G A+
Sbjct: 6 IA-PSPTGDPHVGTAYIA 22
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 28.3 bits (62), Expect = 5.3
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 102 KFFGNFPFPYMNGYLHLGHAFSF 124
++ G F P +G LH G +
Sbjct: 2 QYIGRFA-PSPSGELHFGSLIAA 23
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium
meliloti [TaxId: 382]}
Length = 130
Score = 27.3 bits (59), Expect = 6.1
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 1/121 (0%)
Query: 557 SKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHD 616
S ++ET + + + R + + + V I R + +
Sbjct: 2 SHMLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNL 61
Query: 617 ENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDM 676
+ + G RI + + D + + V M G+
Sbjct: 62 RILMPEPYRHEHDGYLQRYMATG-EKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGER 120
Query: 677 Y 677
+
Sbjct: 121 F 121
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare),
1,3-1,4-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 28.0 bits (62), Expect = 6.6
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 1012 AECLRILQSKFDSKSRTFAPDGEILEALQNSSV 1044
+ + + +S R +AP+ L+A+ + +
Sbjct: 16 STVVSMFKSNGIKSMRLYAPNQAALQAVGGTGI 48
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 28.2 bits (62), Expect = 7.3
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 650 FLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNI 709
+ +++ Y +L KG Y S+ G M +++ + P+ +
Sbjct: 156 DFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCM---LFKLLRGHSPFRQHKTK 212
Query: 710 PSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLT 742
++RM P + L++ L
Sbjct: 213 DKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQ 245
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 27.7 bits (60), Expect = 7.6
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 540 VGDFAGKKVQDAKPLIRSKLIETG 563
G F G A + L E G
Sbjct: 159 GGQFEGMFYDKANKAVTDLLTEKG 182
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 27.7 bits (61), Expect = 7.6
Identities = 23/166 (13%), Positives = 42/166 (25%), Gaps = 17/166 (10%)
Query: 579 SGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENR-HG---FEHTLGWLNQWAC 634
V L I + +A + M + N H + L
Sbjct: 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCK 149
Query: 635 SRSFGLGTRIPWDPQFLVESLSDSTIYMA--YYTVAHMLHKGDMYGSTTGSIEPGQMTDE 692
FGL I + E + A K D++ G + E
Sbjct: 150 IADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWS-------FGILLTE 202
Query: 693 VWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQ 738
I G P ++ +++ + P + L++
Sbjct: 203 ----IVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 244
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,350,501
Number of extensions: 211182
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 47
Length of query: 1142
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1047
Effective length of database: 1,103,246
Effective search space: 1155098562
Effective search space used: 1155098562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)