BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039883
(82 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255558348|ref|XP_002520201.1| two-component sensor protein histidine protein kinase, putative
[Ricinus communis]
gi|223540693|gb|EEF42256.1| two-component sensor protein histidine protein kinase, putative
[Ricinus communis]
Length = 258
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 63/127 (49%), Gaps = 50/127 (39%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEEVHVLAVD---------------------------- 36
NG+ R S+ +GF+ S D +EVHVLAVD
Sbjct: 4 NGIASRRWRSEKIEGFEFSSCDNDEVHVLAVDDSLVDRKVIERLLKITSCKVTAVDSGRR 63
Query: 37 ---------------------LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
LIITDYCMPGMTG EL+KKIK +S TFREIP VI+SSEN
Sbjct: 64 ALQFLGLDEEKSTSIQGLKVDLIITDYCMPGMTGYELLKKIK-ESSTFREIPVVIMSSEN 122
Query: 76 ILARIDR 82
++ARIDR
Sbjct: 123 VMARIDR 129
>gi|309951226|emb|CBX43983.1| putative A-type response regulator 1b [Populus x canadensis]
Length = 257
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%), Gaps = 1/51 (1%)
Query: 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VL VDLIITDYCMPGMTG EL+KKIK +S TFREIP VI+SSEN++ARIDR
Sbjct: 93 VLKVDLIITDYCMPGMTGYELLKKIK-ESTTFREIPVVIMSSENVVARIDR 142
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 3 TTNGVLLSRLMSDGSDGFDLSP---TDTEE--VHVLAVDLIITD 41
++N + +R MS+ DGFDLSP +D EE VHVLAVD + D
Sbjct: 2 SSNSIASNRWMSEKMDGFDLSPNSNSDNEEEGVHVLAVDDSLVD 45
>gi|309951224|emb|CBX43982.1| putative A-type response regulator 1a [Populus x canadensis]
Length = 255
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%), Gaps = 1/51 (1%)
Query: 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VL VDLIITDYCMPGMTG EL+KKIK +S TFREIP VI+SSEN++ARIDR
Sbjct: 95 VLKVDLIITDYCMPGMTGYELLKKIK-ESTTFREIPVVIMSSENVVARIDR 144
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 3 TTNGVLLSRLMSDGSDGFDLSP---TDTEE--VHVLAVDLIITD 41
++N + +R MS+ DGFDLSP +D EE VHVLAVD + D
Sbjct: 2 SSNSIASNRWMSEKMDGFDLSPNSNSDNEEEGVHVLAVDDSLVD 45
>gi|224102663|ref|XP_002312769.1| type-a response regulator [Populus trichocarpa]
gi|222852589|gb|EEE90136.1| type-a response regulator [Populus trichocarpa]
Length = 258
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%), Gaps = 1/51 (1%)
Query: 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VL VDLIITDYCMPGMTG EL+KKIK +S TFREIP VI+SSEN++ARIDR
Sbjct: 95 VLKVDLIITDYCMPGMTGYELLKKIK-ESTTFREIPVVIMSSENVVARIDR 144
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 3 TTNGVLLSRLMSDGSDGFDLSP---TDTEE--VHVLAVDLIITD 41
++N + +R MS+ DGFD SP +D EE VHVLAVD + D
Sbjct: 2 SSNSIASNRWMSEKMDGFDPSPNSNSDNEEEGVHVLAVDDSLVD 45
>gi|118489969|gb|ABK96781.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 248
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L VDLIITDYCMPGMTG EL+KKIK +S +FREIP VI+SSEN++ARIDR
Sbjct: 100 LKVDLIITDYCMPGMTGYELLKKIK-ESSSFREIPVVIMSSENVMARIDR 148
>gi|309951228|emb|CBX43984.1| putative A-type response regulator 2 [Populus x canadensis]
Length = 251
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L VDLIITDYCMPGMTG EL+KKIK +S +FREIP VI+SSEN++ARIDR
Sbjct: 103 LKVDLIITDYCMPGMTGYELLKKIK-ESSSFREIPVVIMSSENVMARIDR 151
>gi|224102495|ref|XP_002312699.1| type-a response regulator [Populus trichocarpa]
gi|222852519|gb|EEE90066.1| type-a response regulator [Populus trichocarpa]
Length = 247
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L VDLIITDYCMPGMTG EL+KKIK +S +FREIP VI+SSEN++ARIDR
Sbjct: 99 LKVDLIITDYCMPGMTGYELLKKIK-ESSSFREIPVVIMSSENVMARIDR 147
>gi|296086487|emb|CBI32076.3| unnamed protein product [Vitis vinifera]
Length = 221
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 62/129 (48%), Gaps = 52/129 (40%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEE-VHVLAVD--------------------------- 36
+GVL R M D GFDLSP +EE HVLAVD
Sbjct: 4 SGVLSRRNMPDEIGGFDLSPGHSEEEAHVLAVDDSLVDRKVIERLLKISSCKVTAVDSGR 63
Query: 37 -----------------------LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
LIITDYCMPGMTG EL+KKIK +S TFRE P VI+SS
Sbjct: 64 RALQFLGLDEEKNSAGLDGLKVDLIITDYCMPGMTGYELLKKIK-ESSTFRETPVVIMSS 122
Query: 74 ENILARIDR 82
ENIL RIDR
Sbjct: 123 ENILTRIDR 131
>gi|297849384|ref|XP_002892573.1| hypothetical protein ARALYDRAFT_888316 [Arabidopsis lyrata subsp.
lyrata]
gi|297338415|gb|EFH68832.1| hypothetical protein ARALYDRAFT_888316 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ E L VDLIITDYCMPGMTG EL+KKIK +S FRE+P VI+SSEN+L RIDR
Sbjct: 78 SAEFDRLKVDLIITDYCMPGMTGYELLKKIK-ESSNFREVPVVIMSSENVLTRIDR 132
>gi|15218550|ref|NP_172517.1| two-component response regulator ARR4 [Arabidopsis thaliana]
gi|51315817|sp|O82798.1|ARR4_ARATH RecName: Full=Two-component response regulator ARR4; AltName:
Full=Response regulator 1
gi|5091539|gb|AAD39568.1|AC007067_8 T10O24.8 [Arabidopsis thaliana]
gi|3273196|dbj|BAA31143.1| responce regulator1 [Arabidopsis thaliana]
gi|3323583|gb|AAC26636.1| two-component response regulator homolog [Arabidopsis thaliana]
gi|3953597|dbj|BAA34726.1| response regulator 4 [Arabidopsis thaliana]
gi|87116590|gb|ABD19659.1| At1g10470 [Arabidopsis thaliana]
gi|110740750|dbj|BAE98474.1| putative response regulator 3 [Arabidopsis thaliana]
gi|332190462|gb|AEE28583.1| two-component response regulator ARR4 [Arabidopsis thaliana]
Length = 259
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ E L VDLIITDYCMPGMTG EL+KKIK +S FRE+P VI+SSEN+L RIDR
Sbjct: 81 SAEFDRLKVDLIITDYCMPGMTGYELLKKIK-ESSNFREVPVVIMSSENVLTRIDR 135
>gi|148608690|gb|ABQ95669.1| response regulator, partial [Malus x domestica]
Length = 209
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G D + T L VDLIITDYCMPGMTG EL+KKIK +S TF+ P VI+SSEN+LA
Sbjct: 40 GLDEEKSSTAGFDGLKVDLIITDYCMPGMTGYELLKKIK-ESSTFKATPVVIMSSENVLA 98
Query: 79 RIDR 82
RIDR
Sbjct: 99 RIDR 102
>gi|148608687|gb|ABQ95668.1| response regulator, partial [Malus x domestica]
Length = 212
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G D + T L VDLIITDYCMPGMTG EL+KKIK +S TF+ P VI+SSEN+LA
Sbjct: 40 GLDEEKSSTAGFDGLKVDLIITDYCMPGMTGYELLKKIK-ESSTFKATPVVIMSSENVLA 98
Query: 79 RIDR 82
RIDR
Sbjct: 99 RIDR 102
>gi|449434875|ref|XP_004135221.1| PREDICTED: two-component response regulator ARR3-like [Cucumis
sativus]
gi|449478516|ref|XP_004155339.1| PREDICTED: two-component response regulator ARR3-like [Cucumis
sativus]
Length = 233
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 59/129 (45%), Gaps = 52/129 (40%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEEVHVLAVD---------------------------- 36
N + R SD DG D PT EVHVLAVD
Sbjct: 4 NHIFSRRRRSDQLDGLDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIR 63
Query: 37 -----------------------LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+IITDYCMPGMTG EL+KKIK +S T REIP VI+SS
Sbjct: 64 ALQYLGLQDETNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIK-ESSTLREIPVVIMSS 122
Query: 74 ENILARIDR 82
EN++ARIDR
Sbjct: 123 ENVVARIDR 131
>gi|147768948|emb|CAN69259.1| hypothetical protein VITISV_026384 [Vitis vinifera]
Length = 210
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L VDLIITDYCMPGMTG EL+KKIK +S TFRE P VI+SSENIL RIDR
Sbjct: 72 LKVDLIITDYCMPGMTGYELLKKIK-ESSTFRETPVVIMSSENILTRIDR 120
>gi|357486271|ref|XP_003613423.1| Two-component response regulator ARR3 [Medicago truncatula]
gi|355514758|gb|AES96381.1| Two-component response regulator ARR3 [Medicago truncatula]
Length = 237
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L VDL+ITDYCMPGMTG EL+KKIK +S TFR IP VI+SSENIL RIDR
Sbjct: 73 LKVDLVITDYCMPGMTGYELLKKIK-ESTTFRAIPVVIMSSENILPRIDR 121
>gi|351725357|ref|NP_001235042.1| uncharacterized protein LOC100305926 [Glycine max]
gi|255627003|gb|ACU13846.1| unknown [Glycine max]
Length = 223
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P++T L VDLIITDYCMPGMTG EL+KKIK +S +F+E P VI+SSEN+L RIDR
Sbjct: 77 PSETNGFGGLKVDLIITDYCMPGMTGYELLKKIK-ESSSFKETPVVIMSSENVLPRIDR 134
>gi|13173408|gb|AAK14395.1|AF339732_1 response regulator protein [Dianthus caryophyllus]
Length = 264
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
T V L +DLIITDYCMPGMTG EL+KKIK +S TF+E P VI+SSEN++ARIDR
Sbjct: 82 TSVVDGLKIDLIITDYCMPGMTGYELLKKIK-ESSTFKETPVVIMSSENVIARIDR 136
>gi|351724253|ref|NP_001238075.1| uncharacterized protein LOC100527828 [Glycine max]
gi|255633320|gb|ACU17017.1| unknown [Glycine max]
Length = 222
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P++T L VDLIITDYCMPGMTG EL+K+IK +S TF+E P VI+SSEN+L RIDR
Sbjct: 77 PSETNGFVGLKVDLIITDYCMPGMTGYELLKRIK-ESSTFKETPVVIMSSENVLPRIDR 134
>gi|15218957|ref|NP_176202.1| two-component response regulator ARR3 [Arabidopsis thaliana]
gi|51316126|sp|Q9ZWS9.1|ARR3_ARATH RecName: Full=Two-component response regulator ARR3
gi|5080824|gb|AAD39333.1|AC007258_22 response regulator 3 [Arabidopsis thaliana]
gi|3953595|dbj|BAA34725.1| response regulator 3 [Arabidopsis thaliana]
gi|89111918|gb|ABD60731.1| At1g59940 [Arabidopsis thaliana]
gi|110737841|dbj|BAF00859.1| hypothetical protein [Arabidopsis thaliana]
gi|332195521|gb|AEE33642.1| two-component response regulator ARR3 [Arabidopsis thaliana]
Length = 231
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E L VDLIITDYCMPGMTG EL+KKIK +S +F+E+P VI+SSEN++ RIDR
Sbjct: 82 EFDRLKVDLIITDYCMPGMTGYELLKKIK-ESTSFKEVPVVIMSSENVMTRIDR 134
>gi|297837533|ref|XP_002886648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332489|gb|EFH62907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 229
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E L VDLIITDYCMPGMTG EL+KKIK +S +F+E+P VI+SSEN++ RIDR
Sbjct: 82 EFDRLKVDLIITDYCMPGMTGYELLKKIK-ESTSFKEVPVVIMSSENVITRIDR 134
>gi|125658123|gb|ABN48988.1| type A response regulator RR1 [Phaseolus vulgaris]
Length = 227
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 47/66 (71%), Gaps = 10/66 (15%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
SDGF V L VDLIITDYCMP MTG EL+KKIK +S FREIP VI+SSENI
Sbjct: 70 SDGF---------VPSLKVDLIITDYCMPEMTGYELLKKIK-ESSMFREIPVVIMSSENI 119
Query: 77 LARIDR 82
L RIDR
Sbjct: 120 LPRIDR 125
>gi|356497802|ref|XP_003517746.1| PREDICTED: two-component response regulator ARR3-like [Glycine max]
Length = 244
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 47/66 (71%), Gaps = 10/66 (15%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
SDGF V L VDLIITDYCMP MTG EL+KKIK +S FREIP VI+SSENI
Sbjct: 70 SDGF---------VPDLKVDLIITDYCMPEMTGYELLKKIK-ESTMFREIPVVIMSSENI 119
Query: 77 LARIDR 82
L RIDR
Sbjct: 120 LPRIDR 125
>gi|356501005|ref|XP_003519320.1| PREDICTED: two-component response regulator ARR3-like [Glycine max]
Length = 240
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 47/66 (71%), Gaps = 10/66 (15%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
SDGF V L VDLIITDYCMP MTG EL+KKIK +S FREIP VI+SSENI
Sbjct: 70 SDGF---------VPDLKVDLIITDYCMPEMTGYELLKKIK-ESTMFREIPVVIMSSENI 119
Query: 77 LARIDR 82
L RIDR
Sbjct: 120 LPRIDR 125
>gi|370988685|dbj|BAL43556.1| type-A response regulator [Petunia x hybrida]
Length = 258
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 46/61 (75%), Gaps = 6/61 (9%)
Query: 26 DTEEVHV----LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
D EE V L VDLIITDYCMPGMTG +L+KKIK S FREIP VI+SSEN+L RID
Sbjct: 67 DEEESSVRIDGLKVDLIITDYCMPGMTGYDLLKKIKGSS--FREIPVVIMSSENVLTRID 124
Query: 82 R 82
R
Sbjct: 125 R 125
>gi|224135721|ref|XP_002322144.1| type-a response regulator [Populus trichocarpa]
gi|222869140|gb|EEF06271.1| type-a response regulator [Populus trichocarpa]
gi|309951242|emb|CBX43991.1| putative A-type response regulator 10 [Populus x canadensis]
Length = 223
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSENILARIDR
Sbjct: 82 LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSENILARIDR 130
>gi|224135725|ref|XP_002322145.1| type-a arp3-like response regulator [Populus trichocarpa]
gi|222869141|gb|EEF06272.1| type-a arp3-like response regulator [Populus trichocarpa]
Length = 192
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSENILARIDR
Sbjct: 82 LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSENILARIDR 130
>gi|351721065|ref|NP_001237197.1| uncharacterized protein LOC100527518 [Glycine max]
gi|255632528|gb|ACU16614.1| unknown [Glycine max]
Length = 211
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN+L RIDR
Sbjct: 79 VKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDR 128
>gi|15230202|ref|NP_191263.1| two-component response regulator ARR9 [Arabidopsis thaliana]
gi|51315815|sp|O80366.1|ARR9_ARATH RecName: Full=Two-component response regulator ARR9; AltName:
Full=Response reactor 4
gi|3273202|dbj|BAA31146.1| responce reactor4 [Arabidopsis thaliana]
gi|6911874|emb|CAB72174.1| responce reactor 4 [Arabidopsis thaliana]
gi|19699061|gb|AAL90898.1| AT3g57040/F24I3_120 [Arabidopsis thaliana]
gi|22137112|gb|AAM91401.1| At3g57040/F24I3_120 [Arabidopsis thaliana]
gi|332646081|gb|AEE79602.1| two-component response regulator ARR9 [Arabidopsis thaliana]
Length = 234
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ + F +P + + V+ V+LIITDYCMPGMTG +L+KK+K +S FR+IP VI+SS
Sbjct: 56 SNDPNAFSKAPVNHQ---VVEVNLIITDYCMPGMTGYDLLKKVK-ESSAFRDIPVVIMSS 111
Query: 74 ENILARIDR 82
EN+ ARI R
Sbjct: 112 ENVPARISR 120
>gi|15228338|ref|NP_190393.1| two-component response regulator ARR5 [Arabidopsis thaliana]
gi|51316111|sp|Q9SB04.2|ARR5_ARATH RecName: Full=Two-component response regulator ARR5; AltName:
Full=Response reactor 2
gi|3273198|dbj|BAA31144.1| responce reactor2 [Arabidopsis thaliana]
gi|4678318|emb|CAB41129.1| responce reactor2 [Arabidopsis thaliana]
gi|18252911|gb|AAL62382.1| response reactor 2 (ATRR2) [Arabidopsis thaliana]
gi|21389637|gb|AAM48017.1| response reactor 2 (ATRR2) [Arabidopsis thaliana]
gi|110741132|dbj|BAE98659.1| response reactor 2 [Arabidopsis thaliana]
gi|332644847|gb|AEE78368.1| two-component response regulator ARR5 [Arabidopsis thaliana]
Length = 184
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
G DG + S E+ L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN
Sbjct: 65 GLDGENNSSVGFED---LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSEN 120
Query: 76 ILARIDR 82
IL RIDR
Sbjct: 121 ILPRIDR 127
>gi|3323581|gb|AAC26635.1| two-component response regulator homolog [Arabidopsis thaliana]
Length = 184
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
G DG + S E+ L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN
Sbjct: 65 GLDGENNSSVGFED---LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSEN 120
Query: 76 ILARIDR 82
IL RIDR
Sbjct: 121 ILPRIDR 127
>gi|3953599|dbj|BAA34727.1| response regulator 5 [Arabidopsis thaliana]
Length = 184
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
G DG + S E+ L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN
Sbjct: 65 GLDGENNSSVGFED---LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSEN 120
Query: 76 ILARIDR 82
IL RIDR
Sbjct: 121 ILPRIDR 127
>gi|15242000|ref|NP_201097.1| two-component response regulator ARR6 [Arabidopsis thaliana]
gi|51316124|sp|Q9ZWS6.2|ARR6_ARATH RecName: Full=Two-component response regulator ARR6
gi|3953601|dbj|BAA34728.1| response regulator 6 [Arabidopsis thaliana]
gi|10177470|dbj|BAB10861.1| response regulator 6 [Arabidopsis thaliana]
gi|28466913|gb|AAO44065.1| At5g62920 [Arabidopsis thaliana]
gi|110735683|dbj|BAE99822.1| response regulator 6 [Arabidopsis thaliana]
gi|332010291|gb|AED97674.1| two-component response regulator ARR6 [Arabidopsis thaliana]
Length = 186
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 26 DTEEVHV----LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
D EE V L V+LI+TDY MPGMTG EL+KKIK +S FRE+P VI+SSENIL RID
Sbjct: 67 DVEEKSVGFEDLKVNLIMTDYSMPGMTGYELLKKIK-ESSAFREVPVVIMSSENILPRID 125
Query: 82 R 82
R
Sbjct: 126 R 126
>gi|297819426|ref|XP_002877596.1| hypothetical protein ARALYDRAFT_906046 [Arabidopsis lyrata subsp.
lyrata]
gi|297323434|gb|EFH53855.1| hypothetical protein ARALYDRAFT_906046 [Arabidopsis lyrata subsp.
lyrata]
Length = 183
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSENIL RIDR
Sbjct: 78 LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSENILPRIDR 126
>gi|255540813|ref|XP_002511471.1| two-component sensor protein histidine protein kinase, putative
[Ricinus communis]
gi|223550586|gb|EEF52073.1| two-component sensor protein histidine protein kinase, putative
[Ricinus communis]
Length = 221
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSENIL RIDR
Sbjct: 80 LKVNLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSENILTRIDR 128
>gi|148608693|gb|ABQ95670.1| type A response regulator, partial [Malus x domestica]
Length = 194
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LIITDY MPGMTG EL+KKIK +S FRE+P VI+SSENIL RIDR
Sbjct: 53 MKVNLIITDYSMPGMTGYELLKKIK-ESSAFREVPVVIMSSENILTRIDR 101
>gi|109631202|gb|ABG35777.1| SRR217 [Striga asiatica]
Length = 220
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 5/74 (6%)
Query: 9 LSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPT 68
S+ S S+ FD SP + + V+ V+L+ITDYCMPGMTG EL+KK+K +F R+IP
Sbjct: 51 WSKDESGNSNAFD-SPKNHQ---VVEVNLVITDYCMPGMTGYELLKKVKESTF-LRDIPV 105
Query: 69 VIISSENILARIDR 82
VI+SSEN+ +RI+R
Sbjct: 106 VIMSSENVPSRINR 119
>gi|388492124|gb|AFK34128.1| unknown [Lotus japonicus]
gi|388498306|gb|AFK37219.1| unknown [Lotus japonicus]
Length = 207
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+ V+LI+TDY MPGMTG EL+KKIK +S FREIP V++SSENIL RID
Sbjct: 73 VKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRID 121
>gi|334184846|ref|NP_001189722.1| two-component response regulator ARR16 [Arabidopsis thaliana]
gi|330254769|gb|AEC09863.1| two-component response regulator ARR16 [Arabidopsis thaliana]
Length = 165
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D +V+ V LIITDYCMPGMTG EL+KK+K +S RE+P VI+SSENI RI++
Sbjct: 78 DALTCNVMKVSLIITDYCMPGMTGFELLKKVKQESSNLREVPVVIMSSENIPTRINK 134
>gi|326518312|dbj|BAJ88185.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 287
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+KKIK +S +FR+IP VI+SSENI +RI+R
Sbjct: 116 VNLIITDYCMPGMTGYDLLKKIK-ESSSFRDIPVVIMSSENIPSRINR 162
>gi|297733851|emb|CBI15098.3| unnamed protein product [Vitis vinifera]
Length = 296
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 13 MSDGSDGFDLSPTDTEEVHV----LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPT 68
+ G+ D EE V L V+LI+TDY MPGMTG EL+KKIK +S FR+IP
Sbjct: 132 VESGTRALQFLGLDGEENSVGFDGLKVNLIMTDYSMPGMTGYELLKKIK-ESKAFRKIPV 190
Query: 69 VIISSENILARIDR 82
VI+SSENIL RIDR
Sbjct: 191 VIMSSENILTRIDR 204
>gi|297817018|ref|XP_002876392.1| hypothetical protein ARALYDRAFT_486148 [Arabidopsis lyrata subsp.
lyrata]
gi|297322230|gb|EFH52651.1| hypothetical protein ARALYDRAFT_486148 [Arabidopsis lyrata subsp.
lyrata]
Length = 232
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+ V+LIITDYCMPGMTG +L+KK+K +S FR+IP VI+SSEN+ ARI R
Sbjct: 68 QVVEVNLIITDYCMPGMTGYDLLKKVK-ESSAFRDIPVVIMSSENVPARISR 118
>gi|356562779|ref|XP_003549646.1| PREDICTED: two-component response regulator ARR5-like isoform 1
[Glycine max]
Length = 206
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 11/68 (16%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+GS GFD + V+LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSE
Sbjct: 71 NGSLGFD----------SVKVNLIMTDYSMPGMTGYELLKKIK-ESSVFREIPVVIMSSE 119
Query: 75 NILARIDR 82
N+L RIDR
Sbjct: 120 NVLTRIDR 127
>gi|297797275|ref|XP_002866522.1| hypothetical protein ARALYDRAFT_496477 [Arabidopsis lyrata subsp.
lyrata]
gi|297312357|gb|EFH42781.1| hypothetical protein ARALYDRAFT_496477 [Arabidopsis lyrata subsp.
lyrata]
Length = 186
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPGMTG EL+KKIK +S FR++P VI+SSENIL RIDR
Sbjct: 78 LKVNLIMTDYSMPGMTGYELLKKIK-ESSAFRQVPVVIMSSENILPRIDR 126
>gi|297816962|ref|XP_002876364.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322202|gb|EFH52623.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 149
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D ++ +V+ V+LIITDYCMPGMTG EL+KK+K +S +E+P VI+SSENI RI++
Sbjct: 63 DPQQTNVMKVNLIITDYCMPGMTGFELLKKVK-ESSNLKEVPVVILSSENIPTRINK 118
>gi|242084508|ref|XP_002442679.1| hypothetical protein SORBIDRAFT_08g001140 [Sorghum bicolor]
gi|241943372|gb|EES16517.1| hypothetical protein SORBIDRAFT_08g001140 [Sorghum bicolor]
Length = 236
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 49/59 (83%), Gaps = 2/59 (3%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P T+++ V AV+LIITDYCMPGMTG +L+KKIK +S + R+IP VI+SSENI +RI+R
Sbjct: 94 PVHTDQLDV-AVNLIITDYCMPGMTGYDLLKKIK-ESSSLRDIPVVIMSSENIPSRINR 150
>gi|388495492|gb|AFK35812.1| unknown [Lotus japonicus]
Length = 239
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 48/61 (78%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP + +EV V +L+ITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI+
Sbjct: 64 ISPNNHQEVEV---NLVITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRIN 119
Query: 82 R 82
R
Sbjct: 120 R 120
>gi|109390454|gb|ABG33766.1| reponse regulator 6 [Musa acuminata]
Length = 156
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+KKIK +S +FR+IP VI+SSENI +RI+R
Sbjct: 96 VNLIITDYCMPGMTGYDLLKKIK-ESSSFRDIPVVIMSSENIPSRINR 142
>gi|225457164|ref|XP_002283787.1| PREDICTED: two-component response regulator ARR5-like [Vitis
vinifera]
Length = 222
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPGMTG EL+KKIK +S FR+IP VI+SSENIL RIDR
Sbjct: 82 LKVNLIMTDYSMPGMTGYELLKKIK-ESKAFRKIPVVIMSSENILTRIDR 130
>gi|346703189|emb|CBX25288.1| hypothetical_protein [Oryza brachyantha]
Length = 200
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 8/71 (11%)
Query: 16 GSDGFDLSP----TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
G G + SP D +E AV+LIITDYCMPGMTG +L+KKIK S+ R+IP VI+
Sbjct: 49 GLHGHEDSPISVQADQQEA---AVNLIITDYCMPGMTGYDLLKKIKESSY-LRDIPVVIM 104
Query: 72 SSENILARIDR 82
SSENI +RI+R
Sbjct: 105 SSENIPSRINR 115
>gi|15227325|ref|NP_181663.1| two-component response regulator ARR8 [Arabidopsis thaliana]
gi|51315814|sp|O80365.1|ARR8_ARATH RecName: Full=Two-component response regulator ARR8; AltName:
Full=Response reactor 3
gi|3273200|dbj|BAA31145.1| responce reactor3 [Arabidopsis thaliana]
gi|3894192|gb|AAC78541.1| putative two-component response regulator 3 protein [Arabidopsis
thaliana]
gi|18491269|gb|AAL69459.1| At2g41310/F13H10.14 [Arabidopsis thaliana]
gi|110736644|dbj|BAF00286.1| putative two-component response regulator 3 protein [Arabidopsis
thaliana]
gi|330254865|gb|AEC09959.1| two-component response regulator ARR8 [Arabidopsis thaliana]
Length = 225
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
R+ + + SP +EV + +LIITDYCMPGMTG +L+KK+K +S FR IP VI
Sbjct: 51 RVDDNDPNALSTSPQIHQEVEI---NLIITDYCMPGMTGYDLLKKVK-ESAAFRSIPVVI 106
Query: 71 ISSENILARIDR 82
+SSEN+ ARI R
Sbjct: 107 MSSENVPARISR 118
>gi|195622036|gb|ACG32848.1| RR10 - Corn type-A response regulator [Zea mays]
Length = 204
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+AV+LIITDYCMPGMTG +L+KKIK +S + R+IP VI+SSENI +RI+R
Sbjct: 74 VAVNLIITDYCMPGMTGYDLLKKIK-ESSSLRDIPVVIMSSENIPSRINR 122
>gi|224033189|gb|ACN35670.1| unknown [Zea mays]
gi|413915889|gb|AFW55821.1| response regulator 6 [Zea mays]
Length = 262
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+AV+LIITDYCMPGMTG +L+KKIK +S + R+IP VI+SSENI +RI+R
Sbjct: 133 VAVNLIITDYCMPGMTGYDLLKKIK-ESSSLRDIPVVIMSSENIPSRINR 181
>gi|449440724|ref|XP_004138134.1| PREDICTED: two-component response regulator ARR5-like [Cucumis
sativus]
gi|449477360|ref|XP_004155001.1| PREDICTED: two-component response regulator ARR5-like [Cucumis
sativus]
Length = 227
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G D + L V+LIITDY MP MTG EL+KKIK +S FREIP VI+SSENI+A
Sbjct: 70 GLDGETNSVQFSSALKVNLIITDYSMPEMTGYELLKKIK-ESSAFREIPVVIMSSENIMA 128
Query: 79 RID 81
RID
Sbjct: 129 RID 131
>gi|162459272|ref|NP_001104857.1| LOC541632 [Zea mays]
gi|12060388|dbj|BAB20581.1| response regulator 6 [Zea mays]
Length = 235
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+AV+LIITDYCMPGMTG +L+KKIK +S + R+IP VI+SSENI +RI+R
Sbjct: 106 VAVNLIITDYCMPGMTGYDLLKKIK-ESSSLRDIPVVIMSSENIPSRINR 154
>gi|194694438|gb|ACF81303.1| unknown [Zea mays]
Length = 235
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+AV+LIITDYCMPGMTG +L+KKIK +S + R+IP VI+SSENI +RI+R
Sbjct: 106 VAVNLIITDYCMPGMTGYDLLKKIK-ESSSLRDIPVVIMSSENIPSRINR 154
>gi|255544001|ref|XP_002513063.1| Two-component response regulator ARR8, putative [Ricinus communis]
gi|223548074|gb|EEF49566.1| Two-component response regulator ARR8, putative [Ricinus communis]
Length = 197
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D E L V+LIITDYCMPGMTG +L++KIK +S +F++IP VI+SSEN+ +RI+R
Sbjct: 74 DDEHHQDLQVNLIITDYCMPGMTGYDLLRKIK-ESKSFKDIPVVIMSSENVPSRINR 129
>gi|388507854|gb|AFK41993.1| unknown [Lotus japonicus]
Length = 209
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LI+TDY MPGMTG EL+KKIK +S FREIP V++SSENIL RIDR
Sbjct: 74 VKVNLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVVMSSENILTRIDR 122
>gi|33330864|gb|AAQ10675.1| type-A response regulator [Catharanthus roseus]
Length = 254
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPGMTG EL+KKIK S T +EIP VI+SSENIL RIDR
Sbjct: 67 LKVNLILTDYSMPGMTGYELLKKIK-GSSTLKEIPVVIMSSENILTRIDR 115
>gi|224086847|ref|XP_002307983.1| type-a response regulator [Populus trichocarpa]
gi|222853959|gb|EEE91506.1| type-a response regulator [Populus trichocarpa]
Length = 233
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 47/61 (77%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP D EV V+LIITDYCMPGMTG +L+KK+K +S + R+IP VI+SSEN+ +RI
Sbjct: 67 VSPNDHREV---EVNLIITDYCMPGMTGYDLLKKVK-ESSSLRDIPVVIMSSENVPSRIT 122
Query: 82 R 82
R
Sbjct: 123 R 123
>gi|357477303|ref|XP_003608937.1| Two-component response regulator ARR5 [Medicago truncatula]
gi|355509992|gb|AES91134.1| Two-component response regulator ARR5 [Medicago truncatula]
Length = 214
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Query: 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN+L RIDR
Sbjct: 78 AVKVNLIMTDYSMPGMTGYELLKKIK-ESSVFREIPVVIMSSENVLTRIDR 127
>gi|346703374|emb|CBX25471.1| hypothetical_protein [Oryza glaberrima]
Length = 201
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ D D + +D +EV AV+LIITDYCMPGMTG +L+KKIK S+ R+IP VI+S
Sbjct: 50 LHDHEDSPISTQSDQQEV---AVNLIITDYCMPGMTGYDLLKKIKESSY-LRDIPVVIMS 105
Query: 73 SENILARIDR 82
S+NI +RI+R
Sbjct: 106 SDNIPSRINR 115
>gi|356562781|ref|XP_003549647.1| PREDICTED: two-component response regulator ARR5-like isoform 2
[Glycine max]
Length = 213
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ + V+LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN+L RIDR
Sbjct: 83 LQSVKVNLIMTDYSMPGMTGYELLKKIK-ESSVFREIPVVIMSSENVLTRIDR 134
>gi|346703759|emb|CBX24427.1| hypothetical_protein [Oryza glaberrima]
Length = 207
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 23 SPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
SP + +AV+LIITDYCMPGMTG +L+KKIK S+ R+IP VI+SS+NI +RI+R
Sbjct: 63 SPISAQSDQQVAVNLIITDYCMPGMTGYDLLKKIKESSY-LRDIPVVIMSSDNIPSRINR 121
>gi|115484121|ref|NP_001065722.1| Os11g0143300 [Oryza sativa Japonica Group]
gi|71273491|emb|CAI79413.1| Type A response regulator 9 [Oryza sativa Indica Group]
gi|87116388|dbj|BAE79353.1| typeA response regulator 9 [Oryza sativa Japonica Group]
gi|108863989|gb|ABA91415.2| Two-component response regulator ARR8, putative, expressed [Oryza
sativa Japonica Group]
gi|113644426|dbj|BAF27567.1| Os11g0143300 [Oryza sativa Japonica Group]
gi|118790795|tpd|FAA00260.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|215765046|dbj|BAG86743.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218185231|gb|EEC67658.1| hypothetical protein OsI_35072 [Oryza sativa Indica Group]
gi|222615502|gb|EEE51634.1| hypothetical protein OsJ_32929 [Oryza sativa Japonica Group]
Length = 201
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ D D + +D +EV AV+LIITDYCMPGMTG +L+KKIK S+ R+IP VI+S
Sbjct: 50 LHDHEDSPISTQSDQQEV---AVNLIITDYCMPGMTGYDLLKKIKESSY-LRDIPVVIMS 105
Query: 73 SENILARIDR 82
S+NI +RI+R
Sbjct: 106 SDNIPSRINR 115
>gi|312283391|dbj|BAJ34561.1| unnamed protein product [Thellungiella halophila]
Length = 190
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPGMTG EL+KKIK +S F++IP V++SSENIL RIDR
Sbjct: 78 LKVNLIMTDYSMPGMTGYELLKKIK-ESSAFKDIPVVVMSSENILPRIDR 126
>gi|108863990|gb|ABA91414.2| Two-component response regulator ARR8, putative, expressed [Oryza
sativa Japonica Group]
Length = 208
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ D D + +D +EV AV+LIITDYCMPGMTG +L+KKIK S+ R+IP VI+S
Sbjct: 57 LHDHEDSPISTQSDQQEV---AVNLIITDYCMPGMTGYDLLKKIKESSY-LRDIPVVIMS 112
Query: 73 SENILARIDR 82
S+NI +RI+R
Sbjct: 113 SDNIPSRINR 122
>gi|147837871|emb|CAN60564.1| hypothetical protein VITISV_013996 [Vitis vinifera]
Length = 154
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ + V V+LIITDYCMPGMTG EL+K+ K QS +E+P VI+SSENI RI++
Sbjct: 69 SHKASVSKVNLIITDYCMPGMTGYELLKRXKQQSSILKEVPVVIMSSENIPTRINK 124
>gi|388497694|gb|AFK36913.1| unknown [Medicago truncatula]
Length = 239
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 4/59 (6%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P + +EV V+L+ITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI+R
Sbjct: 65 PNNHQEV---EVNLVITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRINR 119
>gi|109631210|gb|ABG35781.1| SRR197 [Striga asiatica]
Length = 211
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%), Gaps = 4/60 (6%)
Query: 23 SPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
SP + +E+ V +L+ITDYCMPGMTG +L+KK+K SF R+IP VI+SSEN+ +RI+R
Sbjct: 55 SPKNQQEIEV---NLVITDYCMPGMTGYDLLKKMKESSF-LRDIPVVILSSENVPSRINR 110
>gi|297824073|ref|XP_002879919.1| hypothetical protein ARALYDRAFT_483202 [Arabidopsis lyrata subsp.
lyrata]
gi|297325758|gb|EFH56178.1| hypothetical protein ARALYDRAFT_483202 [Arabidopsis lyrata subsp.
lyrata]
Length = 219
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
R+ + + SP +EV + +LIITDYCMPGMTG +L+KK+K +S R IP VI
Sbjct: 51 RVDDNNPNALSTSPQIHQEVEI---NLIITDYCMPGMTGYDLLKKVK-ESAALRSIPVVI 106
Query: 71 ISSENILARIDR 82
+SSEN+ ARI R
Sbjct: 107 MSSENVPARISR 118
>gi|309951238|emb|CBX43989.1| putative A-type response regulator 7 [Populus x canadensis]
Length = 227
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 47/61 (77%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP + +EV V +LIITDYCMPGMTG +L+KK+K +S + R IP VI+SSEN+ +RI
Sbjct: 65 VSPNNHQEVEV---NLIITDYCMPGMTGYDLLKKVK-ESSSLRNIPVVIMSSENVPSRIT 120
Query: 82 R 82
R
Sbjct: 121 R 121
>gi|388512609|gb|AFK44366.1| unknown [Lotus japonicus]
Length = 239
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 47/61 (77%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP + +EV V +L+ITDYCMPGMTG +L+KKIK +S + R IP V +SSEN+ +RI+
Sbjct: 64 ISPNNHQEVEV---NLVITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVTMSSENVPSRIN 119
Query: 82 R 82
R
Sbjct: 120 R 120
>gi|7594516|emb|CAB88041.1| response regulator-like protein [Arabidopsis thaliana]
Length = 122
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 24 PTDTEEV-HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P T+ + +V+ V+LIITDYCMPGMTG EL+KK+K +S +E+P VI+SSENI RI++
Sbjct: 64 PQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVK-ESSNLKEVPVVILSSENIPTRINK 122
>gi|225441254|ref|XP_002273990.1| PREDICTED: two-component response regulator ARR9 [Vitis vinifera]
Length = 218
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP +EV V +LIITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI
Sbjct: 60 VSPNSHQEVEV---NLIITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRIT 115
Query: 82 R 82
R
Sbjct: 116 R 116
>gi|297824003|ref|XP_002879884.1| hypothetical protein ARALYDRAFT_483126 [Arabidopsis lyrata subsp.
lyrata]
gi|297325723|gb|EFH56143.1| hypothetical protein ARALYDRAFT_483126 [Arabidopsis lyrata subsp.
lyrata]
Length = 163
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D +V+ V+LIITDYCMPGMTG EL+KK+K +S RE+P VI+SSENI RI++
Sbjct: 77 DALTCNVMKVNLIITDYCMPGMTGFELLKKVK-ESSNLRELPVVIMSSENIPTRINK 132
>gi|18410485|ref|NP_567037.1| two-component response regulator ARR17 [Arabidopsis thaliana]
gi|51316089|sp|Q9FPR6.1|ARR17_ARATH RecName: Full=Two-component response regulator ARR17
gi|11870071|gb|AAG40613.1|AF305722_1 response regulator 17 [Arabidopsis thaliana]
gi|332645994|gb|AEE79515.1| two-component response regulator ARR17 [Arabidopsis thaliana]
Length = 153
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 24 PTDTEEV-HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P T+ + +V+ V+LIITDYCMPGMTG EL+KK+K +S +E+P VI+SSENI RI++
Sbjct: 64 PQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVK-ESSNLKEVPVVILSSENIPTRINK 122
>gi|255583668|ref|XP_002532588.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223527676|gb|EEF29785.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 221
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP +EV V +LIITDYCMPGMTG +L+KKIK +S + + IP VI+SSEN+ ARI
Sbjct: 63 VSPNSHQEVEV---NLIITDYCMPGMTGYDLLKKIK-ESSSLKNIPVVIMSSENVPARIT 118
Query: 82 R 82
R
Sbjct: 119 R 119
>gi|297739924|emb|CBI30106.3| unnamed protein product [Vitis vinifera]
Length = 157
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP +EV V +LIITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI
Sbjct: 60 VSPNSHQEVEV---NLIITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRIT 115
Query: 82 R 82
R
Sbjct: 116 R 116
>gi|346703278|emb|CBX25376.1| hypothetical_protein [Oryza brachyantha]
Length = 215
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AV+LIITDYCMPGMTG +L+KKIK +S R+IP VI+SSENI +RI+R
Sbjct: 75 AVNLIITDYCMPGMTGYDLLKKIK-ESSCLRDIPVVIMSSENIPSRINR 122
>gi|359807137|ref|NP_001241095.1| uncharacterized protein LOC100814494 [Glycine max]
gi|255647755|gb|ACU24338.1| unknown [Glycine max]
Length = 244
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 4/59 (6%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P + +EV V +L+ITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI+R
Sbjct: 63 PNNHQEVEV---NLVITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRINR 117
>gi|15226732|ref|NP_181599.1| two-component response regulator ARR16 [Arabidopsis thaliana]
gi|51316112|sp|Q9SHC2.1|ARR16_ARATH RecName: Full=Two-component response regulator ARR16
gi|11870068|gb|AAG40612.1|AF305721_1 response regulator 16 [Arabidopsis thaliana]
gi|10443140|emb|CAC10396.1| putative type A response regulator [Arabidopsis thaliana]
gi|194708806|gb|ACF88487.1| At2g40670 [Arabidopsis thaliana]
gi|330254768|gb|AEC09862.1| two-component response regulator ARR16 [Arabidopsis thaliana]
Length = 164
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D +V+ V LIITDYCMPGMTG EL+KK+K +S RE+P VI+SSENI RI++
Sbjct: 78 DALTCNVMKVSLIITDYCMPGMTGFELLKKVK-ESSNLREVPVVIMSSENIPTRINK 133
>gi|224137712|ref|XP_002322625.1| type-a response regulator [Populus trichocarpa]
gi|222867255|gb|EEF04386.1| type-a response regulator [Populus trichocarpa]
Length = 227
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 47/61 (77%), Gaps = 4/61 (6%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+SP + +E + V+LIITDYCMPGMTG +L+KK+K +S + R IP VI+SSEN+ +RI
Sbjct: 65 VSPNNHQE---MEVNLIITDYCMPGMTGYDLLKKVK-ESSSLRNIPVVIMSSENVPSRIT 120
Query: 82 R 82
R
Sbjct: 121 R 121
>gi|297612639|ref|NP_001066118.2| Os12g0139400 [Oryza sativa Japonica Group]
gi|87116390|dbj|BAE79354.1| typeA response regulator 10 [Oryza sativa Japonica Group]
gi|108862172|gb|ABA96406.2| Two-component response regulator ARR8, putative, expressed [Oryza
sativa Japonica Group]
gi|118790800|tpd|FAA00261.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|218186409|gb|EEC68836.1| hypothetical protein OsI_37415 [Oryza sativa Indica Group]
gi|222616614|gb|EEE52746.1| hypothetical protein OsJ_35177 [Oryza sativa Japonica Group]
gi|255670034|dbj|BAF29137.2| Os12g0139400 [Oryza sativa Japonica Group]
Length = 201
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ D D + +D +EV V+LIITDYCMPGMTG +L+KKIK S+ R+IP VI+S
Sbjct: 50 LHDHEDSPISTQSDQQEV---GVNLIITDYCMPGMTGYDLLKKIKESSY-LRDIPVVIMS 105
Query: 73 SENILARIDR 82
S+NI +RI+R
Sbjct: 106 SDNIPSRINR 115
>gi|109631208|gb|ABG35780.1| SRR198 [Striga asiatica]
Length = 238
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
S G +SP +EV V +L+ITDYCMPGMTG +L+KK+K +S + + IP VI+SSEN
Sbjct: 58 NSKGTSVSPKTHQEVEV---NLVITDYCMPGMTGYDLLKKMK-ESSSLKNIPVVIVSSEN 113
Query: 76 ILARIDR 82
+ +RI R
Sbjct: 114 VPSRITR 120
>gi|309951236|emb|CBX43988.1| putative A-type response regulator 6 [Populus x canadensis]
Length = 230
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 4/59 (6%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P D EV V +LIITDYCMPGMTG +L+KK+K +S + R+IP VI+SSEN+ +RI R
Sbjct: 69 PNDHREVEV---NLIITDYCMPGMTGYDLLKKVK-ESSSLRDIPVVIMSSENVPSRITR 123
>gi|224144996|ref|XP_002325489.1| type-a response regulator [Populus trichocarpa]
gi|222862364|gb|EEE99870.1| type-a response regulator [Populus trichocarpa]
Length = 154
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E +V V+LIITDYCMPGMTG EL+KKIK +S +EIP VI+SSENI RI++
Sbjct: 71 EDNVSKVNLIITDYCMPGMTGYELLKKIK-ESSMLKEIPVVIMSSENIPTRINK 123
>gi|357160996|ref|XP_003578944.1| PREDICTED: two-component response regulator ARR9-like [Brachypodium
distachyon]
Length = 225
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+KKIK +S + R+IP VI+SSEN+ +RI+R
Sbjct: 71 VNLIITDYCMPGMTGYDLLKKIK-ESSSLRDIPVVIMSSENVPSRINR 117
>gi|225465885|ref|XP_002267404.1| PREDICTED: two-component response regulator ARR9 [Vitis vinifera]
Length = 220
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 21 DLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+LSP + V+LIITDYCMPGMTG +L++KIK +S + ++IP VI+SSENI +RI
Sbjct: 57 NLSPPSLCPSQEMEVNLIITDYCMPGMTGYDLLRKIK-ESTSLKDIPVVIMSSENIPSRI 115
Query: 81 DR 82
+R
Sbjct: 116 NR 117
>gi|296090338|emb|CBI40157.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 21 DLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+LSP + V+LIITDYCMPGMTG +L++KIK +S + ++IP VI+SSENI +RI
Sbjct: 57 NLSPPSLCPSQEMEVNLIITDYCMPGMTGYDLLRKIK-ESTSLKDIPVVIMSSENIPSRI 115
Query: 81 DR 82
+R
Sbjct: 116 NR 117
>gi|356516718|ref|XP_003527040.1| PREDICTED: two-component response regulator ARR6-like [Glycine max]
Length = 204
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
V+LI+TDY MPGMTG EL+KKIK +S FRE+P V++SSENIL RID
Sbjct: 76 VNLIMTDYSMPGMTGYELLKKIK-ESSVFREVPVVVMSSENILTRID 121
>gi|357515051|ref|XP_003627814.1| Two-component response regulator ARR8 [Medicago truncatula]
gi|92885116|gb|ABE87636.1| Response regulator receiver [Medicago truncatula]
gi|355521836|gb|AET02290.1| Two-component response regulator ARR8 [Medicago truncatula]
gi|388516389|gb|AFK46256.1| unknown [Medicago truncatula]
Length = 177
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L++KIK +S +F++IP VI+SSEN+ +RI+R
Sbjct: 72 VNLIITDYCMPGMTGYDLLRKIK-ESKSFKDIPVVIMSSENVPSRINR 118
>gi|255559713|ref|XP_002520876.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223540007|gb|EEF41585.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 155
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E +V V+LIITDYCMPGMTG EL+KKIK +S +E+P VI+SSENI RI++
Sbjct: 72 ENNVSKVNLIITDYCMPGMTGYELLKKIK-ESSIMKEVPVVIVSSENIPTRINK 124
>gi|351725781|ref|NP_001238384.1| uncharacterized protein LOC100306152 [Glycine max]
gi|255627697|gb|ACU14193.1| unknown [Glycine max]
Length = 201
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+ V+LI+TDY MPGMTG EL+KKIK +S FRE+P V++SSENIL RID
Sbjct: 74 VKVNLIMTDYSMPGMTGYELLKKIK-ESSVFREVPVVVMSSENILTRID 121
>gi|225448707|ref|XP_002280746.1| PREDICTED: two-component response regulator ARR17 [Vitis vinifera]
Length = 153
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ + V V+LIITDYCMPGMTG EL+K++K QS +E+P VI+SSENI RI++
Sbjct: 69 SHKASVSKVNLIITDYCMPGMTGYELLKRVK-QSSILKEVPVVIMSSENIPTRINK 123
>gi|309951232|emb|CBX43986.1| putative A-type response regulator 4 [Populus x canadensis]
Length = 193
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
S+ +SP D H+ +++IITDYCMPGMTG +L+KKIK +S F++IP VI+SSEN+
Sbjct: 63 SNPSSVSP-DHHHQHI-EINMIITDYCMPGMTGYDLLKKIK-ESKYFKDIPVVIMSSENV 119
Query: 77 LARIDR 82
+RI+R
Sbjct: 120 PSRINR 125
>gi|224075846|ref|XP_002304794.1| type-a response regulator [Populus trichocarpa]
gi|224075848|ref|XP_002304795.1| hypothetical protein POPTRDRAFT_693167 [Populus trichocarpa]
gi|222842226|gb|EEE79773.1| type-a response regulator [Populus trichocarpa]
gi|222842227|gb|EEE79774.1| hypothetical protein POPTRDRAFT_693167 [Populus trichocarpa]
Length = 193
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
S+ +SP D H+ +++IITDYCMPGMTG +L+KKIK +S F++IP VI+SSEN+
Sbjct: 63 SNPSSVSP-DHHHQHI-EINMIITDYCMPGMTGYDLLKKIK-ESKYFKDIPVVIMSSENV 119
Query: 77 LARIDR 82
+RI+R
Sbjct: 120 PSRINR 125
>gi|370988687|dbj|BAL43557.1| type-A response regulator [Petunia x hybrida]
Length = 227
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
++LIITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI+R
Sbjct: 74 INLIITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRINR 120
>gi|358248966|ref|NP_001240226.1| uncharacterized protein LOC100788079 [Glycine max]
gi|255641691|gb|ACU21117.1| unknown [Glycine max]
Length = 248
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+L+ITDYCMPGMTG +L+KKIK +S + R IP VI+SSEN+ +RI+R
Sbjct: 74 VEVNLVITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRINR 122
>gi|297736479|emb|CBI25350.3| unnamed protein product [Vitis vinifera]
Length = 141
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ + V V+LIITDYCMPGMTG EL+K++K QS +E+P VI+SSENI RI++
Sbjct: 57 SHKASVSKVNLIITDYCMPGMTGYELLKRVK-QSSILKEVPVVIMSSENIPTRINK 111
>gi|297842233|ref|XP_002888998.1| hypothetical protein ARALYDRAFT_316423 [Arabidopsis lyrata subsp.
lyrata]
gi|297334839|gb|EFH65257.1| hypothetical protein ARALYDRAFT_316423 [Arabidopsis lyrata subsp.
lyrata]
Length = 206
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPG+TG EL+KKIK +S FREIP VI+SSENI RI++
Sbjct: 71 LKVNLIVTDYSMPGLTGYELLKKIK-ESSAFREIPVVIMSSENIQPRIEQ 119
>gi|441415442|dbj|BAM74645.1| type-A response regulator [Torenia fournieri]
Length = 213
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ ++LI+TDY MPGMTG EL++KIK S REIP V++SSEN+LARIDR
Sbjct: 73 VKLNLIVTDYSMPGMTGFELLQKIK-GSKALREIPVVVMSSENVLARIDR 121
>gi|297850294|ref|XP_002893028.1| hypothetical protein ARALYDRAFT_889335 [Arabidopsis lyrata subsp.
lyrata]
gi|297338870|gb|EFH69287.1| hypothetical protein ARALYDRAFT_889335 [Arabidopsis lyrata subsp.
lyrata]
Length = 209
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
L V+LI+TDY MPG+TG +L+KKIK +S FRE+P VI+SSENIL RI+
Sbjct: 77 LKVNLIVTDYSMPGLTGYDLLKKIK-ESSAFREVPVVIMSSENILPRIE 124
>gi|309951240|emb|CBX43990.1| putative A-type response regulator 8 [Populus x canadensis]
Length = 154
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E +V V+LIITDYCMPGMTG EL+KKIK +S ++IP VI+SSENI RI++
Sbjct: 71 EDNVSKVNLIITDYCMPGMTGYELLKKIK-ESSMLKKIPVVIMSSENIPTRINK 123
>gi|449437731|ref|XP_004136644.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
Length = 226
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LIITDYCMPGMTG +L+KK+K +S + R IP VI+SSEN+ +RI+R
Sbjct: 77 VEVNLIITDYCMPGMTGFDLLKKVK-ESTSLRNIPVVIMSSENVPSRINR 125
>gi|309951234|emb|CBX43987.1| putative A-type response regulator 5 [Populus x canadensis]
Length = 198
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
S+ +SP D H+ +++IITDYCMPGMTG +L+KKIK +S F++IP VI+SSEN+
Sbjct: 67 SEPASVSP-DPYHQHI-EINMIITDYCMPGMTGYDLLKKIK-ESKYFKDIPVVIMSSENV 123
Query: 77 LARIDR 82
+RI+R
Sbjct: 124 PSRINR 129
>gi|449526812|ref|XP_004170407.1| PREDICTED: two-component response regulator ARR9-like, partial
[Cucumis sativus]
Length = 194
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LIITDYCMPGMTG +L+KK+K +S + R IP VI+SSEN+ +RI+R
Sbjct: 45 VEVNLIITDYCMPGMTGFDLLKKVK-ESTSLRNIPVVIMSSENVPSRINR 93
>gi|388492888|gb|AFK34510.1| unknown [Medicago truncatula]
Length = 167
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+ V+LIITDYCMPGMTG +L++KIK +S + ++IP VI SSEN+ +RI+R
Sbjct: 64 QVVEVNLIITDYCMPGMTGYDLLRKIK-ESNSLKDIPVVITSSENVPSRINR 114
>gi|351724591|ref|NP_001236551.1| uncharacterized protein LOC100499827 [Glycine max]
gi|255626955|gb|ACU13822.1| unknown [Glycine max]
Length = 146
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDYCMPGMTG EL+KKIK +S +E+P VI+SSENI RI++
Sbjct: 72 VNMIITDYCMPGMTGYELLKKIK-ESSVMKEVPVVIMSSENIPTRINK 118
>gi|224053258|ref|XP_002297741.1| type-a response regulator [Populus trichocarpa]
gi|222844999|gb|EEE82546.1| type-a response regulator [Populus trichocarpa]
Length = 203
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ +++IITDYCMPGMTG +L+KKIK +S F++IP VI+SSEN+ +RI+R
Sbjct: 81 IEINMIITDYCMPGMTGYDLLKKIK-ESKYFKDIPVVIMSSENVPSRINR 129
>gi|359807455|ref|NP_001241393.1| uncharacterized protein LOC100778707 [Glycine max]
gi|255637322|gb|ACU18991.1| unknown [Glycine max]
Length = 146
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+++ITDYCMPGMTG EL+KKIK S T +E+P VI+SSENI RI++
Sbjct: 72 VNMVITDYCMPGMTGYELLKKIKESSVT-KEVPVVIMSSENIPTRINK 118
>gi|449449356|ref|XP_004142431.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
gi|449527272|ref|XP_004170636.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
Length = 173
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 22 LSPTDTEEVHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+SP D + H + V+LIITDYCMP MTG +L++KIK +S + ++IP VI+SSEN+ +RI
Sbjct: 65 ISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIK-ESDSLKDIPVVIMSSENVPSRI 123
Query: 81 DR 82
+R
Sbjct: 124 NR 125
>gi|162459124|ref|NP_001104856.1| response regulator 5 [Zea mays]
gi|12060386|dbj|BAB20580.1| response regulator 5 [Zea mays]
Length = 236
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 69 VNLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 115
>gi|226532164|ref|NP_001149868.1| RR4 - Corn type-A response regulator [Zea mays]
gi|195635163|gb|ACG37050.1| RR4 - Corn type-A response regulator [Zea mays]
Length = 236
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 69 VNLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 115
>gi|388506210|gb|AFK41171.1| unknown [Lotus japonicus]
Length = 174
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 46/55 (83%), Gaps = 2/55 (3%)
Query: 29 EVHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E+H + V+LIITDYCMPGMTG +L++KIK +S + ++IP VI+SSEN+ +RI+R
Sbjct: 59 EIHQDVDVNLIITDYCMPGMTGYDLLRKIK-ESKSLKDIPVVIMSSENVPSRINR 112
>gi|212274883|ref|NP_001130159.1| uncharacterized protein LOC100191253 [Zea mays]
gi|194688426|gb|ACF78297.1| unknown [Zea mays]
gi|194695472|gb|ACF81820.1| unknown [Zea mays]
gi|223975127|gb|ACN31751.1| unknown [Zea mays]
Length = 242
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 69 VNLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 115
>gi|255647513|gb|ACU24220.1| unknown [Glycine max]
Length = 191
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMP MTG +L+KKIK +S + ++IP VI+SSEN+ ARI+R
Sbjct: 73 VNLIITDYCMPEMTGYDLLKKIK-ESKSLKDIPVVIMSSENVPARINR 119
>gi|242055597|ref|XP_002456944.1| hypothetical protein SORBIDRAFT_03g046040 [Sorghum bicolor]
gi|241928919|gb|EES02064.1| hypothetical protein SORBIDRAFT_03g046040 [Sorghum bicolor]
Length = 245
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 120
>gi|115442281|ref|NP_001045420.1| Os01g0952500 [Oryza sativa Japonica Group]
gi|15528802|dbj|BAB64697.1| putative response regulator [Oryza sativa Japonica Group]
gi|71273481|emb|CAI79408.1| Type A response regulator 4 [Oryza sativa Indica Group]
gi|87116386|dbj|BAE79352.1| typeA response regulator 4 [Oryza sativa Japonica Group]
gi|113534951|dbj|BAF07334.1| Os01g0952500 [Oryza sativa Japonica Group]
gi|118790806|tpd|FAA00262.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|125529138|gb|EAY77252.1| hypothetical protein OsI_05226 [Oryza sativa Indica Group]
gi|125573340|gb|EAZ14855.1| hypothetical protein OsJ_04783 [Oryza sativa Japonica Group]
gi|215678767|dbj|BAG95204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 232
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI+R
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARINR 120
>gi|370988689|dbj|BAL43558.1| type-A response regulator [Petunia x hybrida]
Length = 158
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDYCMPGMTG EL+KKIK +S +++P VI+SSENI RID+
Sbjct: 79 VNMIITDYCMPGMTGYELLKKIK-ESSILKDVPVVIMSSENIPTRIDQ 125
>gi|15222035|ref|NP_177627.1| two-component response regulator ARR15 [Arabidopsis thaliana]
gi|51315904|sp|Q7G8V2.1|ARR15_ARATH RecName: Full=Two-component response regulator ARR15
gi|5882734|gb|AAD55287.1|AC008263_18 Similar to gb|AB008490 response regulator 7 (ARR7) from Arabidopsis
thaliana. EST gb|AA042183 comes from this gene
[Arabidopsis thaliana]
gi|11870065|gb|AAG40611.1|AF305720_1 response regulator 15 [Arabidopsis thaliana]
gi|12323888|gb|AAG51914.1|AC013258_8 putative response regulator (two component phosphotransfer
signaling); 70657-71777 [Arabidopsis thaliana]
gi|332197523|gb|AEE35644.1| two-component response regulator ARR15 [Arabidopsis thaliana]
Length = 206
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPG+TG EL+KKIK +S REIP VI+SSENI RI++
Sbjct: 71 LKVNLIVTDYSMPGLTGYELLKKIK-ESSALREIPVVIMSSENIQPRIEQ 119
>gi|15221927|ref|NP_173339.1| two-component response regulator ARR7 [Arabidopsis thaliana]
gi|51316125|sp|Q9ZWS7.1|ARR7_ARATH RecName: Full=Two-component response regulator ARR7
gi|8778291|gb|AAF79300.1|AC068602_23 F14D16.20 [Arabidopsis thaliana]
gi|3953603|dbj|BAA34729.1| response regulator 7 [Arabidopsis thaliana]
gi|88193788|gb|ABD42983.1| At1g19050 [Arabidopsis thaliana]
gi|332191674|gb|AEE29795.1| two-component response regulator ARR7 [Arabidopsis thaliana]
Length = 206
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
L V+LI+TDY MPG++G +L+KKIK +S FRE+P VI+SSENIL RI
Sbjct: 77 LKVNLIVTDYSMPGLSGYDLLKKIK-ESSAFREVPVVIMSSENILPRIQ 124
>gi|363807796|ref|NP_001242179.1| uncharacterized protein LOC100818762 [Glycine max]
gi|255633210|gb|ACU16961.1| unknown [Glycine max]
Length = 172
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LIITDYCMP MTG +L+KKIK +S + ++IP VI+SSEN+ ARI+R
Sbjct: 71 VEVNLIITDYCMPEMTGYDLLKKIK-ESKSLKDIPVVIMSSENVPARINR 119
>gi|357126832|ref|XP_003565091.1| PREDICTED: two-component response regulator ARR9-like [Brachypodium
distachyon]
Length = 213
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%), Gaps = 4/57 (7%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D +EV V +LIITDYCMPGMTG +L++++K S + ++IP VI+SSEN+ ARI+R
Sbjct: 71 DHQEVDV---NLIITDYCMPGMTGYDLLRRVK-GSSSLKDIPVVIMSSENVPARINR 123
>gi|356555024|ref|XP_003545839.1| PREDICTED: two-component response regulator ARR8-like [Glycine max]
Length = 179
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 29 EVHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E+H + ++LIITDYCMPGMTG +L++KIK +S + + IP VI+SSEN+ +RI+R
Sbjct: 65 EIHQDVDINLIITDYCMPGMTGYDLLRKIK-ESKSLKNIPVVIMSSENVPSRINR 118
>gi|414878657|tpg|DAA55788.1| TPA: hypothetical protein ZEAMMB73_373156 [Zea mays]
Length = 123
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 69 VNLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 115
>gi|195644464|gb|ACG41700.1| RR4 - Corn type-A response regulator [Zea mays]
Length = 234
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 80 VSLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 126
>gi|162459025|ref|NP_001104855.1| LOC541630 [Zea mays]
gi|12060384|dbj|BAB20579.1| response regulator 4 [Zea mays]
Length = 235
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 81 VSLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 127
>gi|226492050|ref|NP_001146776.1| uncharacterized protein LOC100280379 [Zea mays]
gi|223942947|gb|ACN25557.1| unknown [Zea mays]
gi|413951289|gb|AFW83938.1| response regulator 4 [Zea mays]
Length = 233
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 81 VSLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 127
>gi|449445057|ref|XP_004140290.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
gi|449527697|ref|XP_004170846.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
Length = 156
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
++P + V+LIITDY MPGM+G EL++KIK +S + ++IP VI+SSEN+ +RI+
Sbjct: 63 IAPDQNHHHQEVDVNLIITDYSMPGMSGYELLRKIK-ESKSLKDIPVVIMSSENVPSRIN 121
Query: 82 R 82
R
Sbjct: 122 R 122
>gi|441415444|dbj|BAM74646.1| type-A response regulator [Torenia fournieri]
Length = 141
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G D + + + V++IITDYCMPGMTG EL+KKIK +S +++P VI+SSEN+
Sbjct: 50 GDDQNISSDDNAAASKVNMIITDYCMPGMTGYELLKKIK-ESSVMKDVPVVIMSSENVPT 108
Query: 79 RIDR 82
RI++
Sbjct: 109 RINK 112
>gi|224146583|ref|XP_002326060.1| type-a response regulator [Populus trichocarpa]
gi|222862935|gb|EEF00442.1| type-a response regulator [Populus trichocarpa]
Length = 151
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V++IITDY MPGMTG EL+K+IK +S T +EIP V++SSENI RI++
Sbjct: 72 LKVNMIITDYSMPGMTGYELLKRIK-ESPTMKEIPVVVVSSENIPTRINQ 120
>gi|356546360|ref|XP_003541594.1| PREDICTED: two-component response regulator ARR8-like [Glycine max]
Length = 179
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 29 EVHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E+H + V+LIITDYCMPG+TG +L++KIK +S + + IP VI+SSEN+ +RI+R
Sbjct: 65 EIHQDVDVNLIITDYCMPGLTGYDLLRKIK-ESKSLKNIPVVIMSSENVPSRINR 118
>gi|37956247|gb|AAP32005.1| putative two-component system response regulator [Populus tremula
x Populus alba]
Length = 74
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 36/40 (90%), Gaps = 1/40 (2%)
Query: 43 CMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
CMPGMTG EL+KKIK +S +FREIP VI+SSEN++ARIDR
Sbjct: 1 CMPGMTGYELLKKIK-ESSSFREIPVVIMSSENVMARIDR 39
>gi|168029974|ref|XP_001767499.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681205|gb|EDQ67634.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 144
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G S + + + +V AV+LI+TDYCMPGMTG +L+K +K ++ F+E+P +++SSEN
Sbjct: 59 GLSESCSSSGKPNVRAVNLIMTDYCMPGMTGYDLLKIVKAETSAFKELPVIVMSSENDSN 118
Query: 79 RI 80
RI
Sbjct: 119 RI 120
>gi|413951288|gb|AFW83937.1| hypothetical protein ZEAMMB73_670408 [Zea mays]
Length = 127
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 81 VSLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 127
>gi|449533717|ref|XP_004173818.1| PREDICTED: two-component response regulator ARR9-like, partial
[Cucumis sativus]
Length = 255
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+L+ITDYCMP MTG +L+KKIK S R IP VI+SSEN+ ARI+R
Sbjct: 80 VNLVITDYCMPEMTGYDLLKKIK-GSTALRNIPVVIMSSENVPARINR 126
>gi|359828772|gb|AEV76988.1| type A response regulator 4, partial [Triticum aestivum]
Length = 203
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LIITDYCMPGMTG +L++++K S + ++IP VI+SSEN+ ARI R
Sbjct: 73 VGVNLIITDYCMPGMTGYDLLRRVK-GSSSLKDIPVVIMSSENVPARISR 121
>gi|226492361|ref|NP_001146526.1| uncharacterized protein LOC100280118 [Zea mays]
gi|219887677|gb|ACL54213.1| unknown [Zea mays]
Length = 127
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V LIITDYCMPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 81 VSLIITDYCMPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 127
>gi|449453183|ref|XP_004144338.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
Length = 261
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+L+ITDYCMP MTG +L+KKIK S R IP VI+SSEN+ ARI+R
Sbjct: 80 VNLVITDYCMPEMTGYDLLKKIK-GSTALRNIPVVIMSSENVPARINR 126
>gi|296090342|emb|CBI40161.3| unnamed protein product [Vitis vinifera]
Length = 161
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 7/59 (11%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P +TE V+LIITDY MPGMTG +L++KIK +S + ++IP VI+SSENI +RI+R
Sbjct: 75 PQETE------VNLIITDYSMPGMTGYDLLRKIK-ESSSLKDIPVVIMSSENIPSRINR 126
>gi|33330868|gb|AAQ10677.1| type-A response regulator [Catharanthus roseus]
Length = 188
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+ V+LIITDY MPGMTG +L++K+K S+ ++IP VI+SSENI +RI+R
Sbjct: 65 QVVEVNLIITDYSMPGMTGYDLLRKVKESSY-LKDIPVVIMSSENIPSRINR 115
>gi|356541574|ref|XP_003539249.1| PREDICTED: two-component response regulator ARR9-like [Glycine max]
Length = 187
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDYCMP MTG +L++KIK +S + ++IP VI+SSEN+ ARI+R
Sbjct: 73 VNLIITDYCMPEMTGYDLLRKIK-ESKSLKDIPVVIMSSENVPARINR 119
>gi|225465891|ref|XP_002267932.1| PREDICTED: two-component response regulator ARR9 [Vitis vinifera]
Length = 146
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 7/59 (11%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P +TE V+LIITDY MPGMTG +L++KIK +S + ++IP VI+SSENI +RI+R
Sbjct: 60 PQETE------VNLIITDYSMPGMTGYDLLRKIK-ESSSLKDIPVVIMSSENIPSRINR 111
>gi|168002238|ref|XP_001753821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695228|gb|EDQ81573.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 124
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 18 DGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D LS + + L ++LI+TDYCMP MTG +L+K++K Q+ +EIP V++SSEN
Sbjct: 38 DVLGLSESRSASSTRLDINLIMTDYCMPEMTGYDLLKRVKAQTSALKEIPVVLMSSENDS 97
Query: 78 ARIDR 82
RI+R
Sbjct: 98 NRIER 102
>gi|225465893|ref|XP_002268352.1| PREDICTED: two-component response regulator ARR9 [Vitis vinifera]
gi|296090344|emb|CBI40163.3| unnamed protein product [Vitis vinifera]
Length = 197
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ V+LIITDY MPGMTG +L++KIK +S + ++IP VI+SSENI +RI+R
Sbjct: 63 MEVNLIITDYSMPGMTGYDLLRKIK-ESSSLKDIPVVIMSSENIPSRINR 111
>gi|116788845|gb|ABK25022.1| unknown [Picea sitchensis]
Length = 208
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
GF + + V++IITDYCMPGMTG +L+KK++ ++ +EIP VIISSEN+
Sbjct: 73 GFHEEQSTCAASNAFKVNMIITDYCMPGMTGYDLLKKVQ-ETKCLKEIPVVIISSENVPQ 131
Query: 79 RI 80
RI
Sbjct: 132 RI 133
>gi|302804881|ref|XP_002984192.1| type A response regulator [Selaginella moellendorffii]
gi|300148041|gb|EFJ14702.1| type A response regulator [Selaginella moellendorffii]
Length = 278
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 31 HVLAV--DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
H+LA+ +LIITDYCMP MTG +L+KK+K +S +EIP VI+SSEN+ RI
Sbjct: 62 HLLAIKINLIITDYCMPEMTGYDLLKKVK-ESSALKEIPVVIMSSENVAERI 112
>gi|224713626|gb|ACN62086.1| response regulator 1 [Pinus pinea]
Length = 184
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V + V++IITDYCMPGMTG +L++++K +S ++IP VI+SSEN+ +RI R
Sbjct: 65 VDNIQVNMIITDYCMPGMTGYDLLRRVK-ESSAVKDIPVVIMSSENVESRISR 116
>gi|383792043|dbj|BAM10424.1| Type-a response regulator protein, partial [Salix japonica]
Length = 94
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
L + LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSENI
Sbjct: 52 LKIHLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSENI 94
>gi|109631204|gb|ABG35778.1| SRR201 [Striga asiatica]
Length = 223
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPGMTG EL++KIK S + IP VI+SSENI+ RIDR
Sbjct: 72 LKVNLIMTDYSMPGMTGFELLQKIK-GSAKLKGIPVVILSSENIMTRIDR 120
>gi|225465887|ref|XP_002267375.1| PREDICTED: two-component response regulator ARR9 [Vitis vinifera]
gi|296090339|emb|CBI40158.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDY MPGMTG +L++KIK +S + ++IP VI+SSENI +RI+R
Sbjct: 59 VNLIITDYSMPGMTGYDLLRKIK-ESTSLKDIPVVIMSSENIPSRINR 105
>gi|302804879|ref|XP_002984191.1| type A response regulator [Selaginella moellendorffii]
gi|300148040|gb|EFJ14701.1| type A response regulator [Selaginella moellendorffii]
Length = 272
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ + ++LIITDYCMP MTG +L+KK+K +S +EIP VI+SSEN+ RI
Sbjct: 57 INAIKINLIITDYCMPEMTGYDLLKKVK-ESSALKEIPVVIMSSENVAERI 106
>gi|326531500|dbj|BAJ97754.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 173
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K++K +S REIP VI+SSEN+ RI R
Sbjct: 100 VNMIITDYWMPGMTGYELLKRVK-ESSELREIPVVIMSSENVPNRITR 146
>gi|357162610|ref|XP_003579464.1| PREDICTED: two-component response regulator ARR5-like [Brachypodium
distachyon]
Length = 163
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K++K +S +EIP VI+SSEN+ RI+R
Sbjct: 90 VNMIITDYWMPGMTGYELLKRVK-ESSELKEIPVVIMSSENVPNRINR 136
>gi|302141801|emb|CBI19004.3| unnamed protein product [Vitis vinifera]
Length = 232
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+E+ L V+LI+TDYCMPGM+G +L+K++K +++++P V++SSEN+ +RI+
Sbjct: 94 QQEMQGLKVNLIMTDYCMPGMSGYDLLKRVK--GSSWKDVPVVVMSSENVPSRIN 146
>gi|357456553|ref|XP_003598557.1| Two-component response regulator ARR9 [Medicago truncatula]
gi|355487605|gb|AES68808.1| Two-component response regulator ARR9 [Medicago truncatula]
gi|357595944|gb|AET86869.1| cytokinin resposne regulator 9 [Medicago truncatula]
Length = 164
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
V+ V+LIITDYCMPGMTG +L++KIK +S + ++IP VI+SSEN+
Sbjct: 64 QVVEVNLIITDYCMPGMTGYDLLRKIK-ESNSLKDIPVVIMSSENV 108
>gi|302781008|ref|XP_002972278.1| hypothetical protein SELMODRAFT_97144 [Selaginella moellendorffii]
gi|300159745|gb|EFJ26364.1| hypothetical protein SELMODRAFT_97144 [Selaginella moellendorffii]
Length = 293
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ ++LIITDYCMP MTG +L+KK+K +S +EIP VI+SSEN+ RI
Sbjct: 78 QAIKINLIITDYCMPEMTGYDLLKKVK-ESSALKEIPVVIMSSENVAERI 126
>gi|357144070|ref|XP_003573159.1| PREDICTED: two-component response regulator ARR9-like
[Brachypodium distachyon]
Length = 135
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDYCMP MTG EL+K++K ++ REIP VI+SSEN ARI R
Sbjct: 52 VHMIITDYCMPEMTGYELLKRVK-ETAELREIPVVIMSSENSPARIRR 98
>gi|168022134|ref|XP_001763595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685088|gb|EDQ71485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 146
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 39/49 (79%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AV LI+TDYCMP MTG EL+K +K ++ F+++P +++SSEN +RI+R
Sbjct: 72 AVHLIMTDYCMPEMTGYELLKIVKAETSAFKDVPVILMSSENDSSRIER 120
>gi|90265238|emb|CAH67773.1| H0322F07.10 [Oryza sativa Indica Group]
gi|90399191|emb|CAH68178.1| H0403D02.6 [Oryza sativa Indica Group]
gi|125550193|gb|EAY96015.1| hypothetical protein OsI_17886 [Oryza sativa Indica Group]
Length = 170
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K++K +S +EIP VI+SSEN+ RI R
Sbjct: 97 VNMIITDYWMPGMTGYELLKRVK-ESSQLKEIPVVIMSSENVPNRISR 143
>gi|359495010|ref|XP_003634897.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR9-like [Vitis vinifera]
Length = 141
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDY MPGMTG +L++KIK +S + ++IP VI+SSENI +RI R
Sbjct: 59 VNLIITDYSMPGMTGYDLLRKIK-ESTSLKDIPVVIMSSENIPSRITR 105
>gi|242074746|ref|XP_002447309.1| hypothetical protein SORBIDRAFT_06g032600 [Sorghum bicolor]
gi|241938492|gb|EES11637.1| hypothetical protein SORBIDRAFT_06g032600 [Sorghum bicolor]
Length = 170
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K +K +S REIP VI+SSEN+ RI R
Sbjct: 97 VNMIITDYWMPGMTGYELLKHVK-ESSELREIPVVIMSSENVPTRITR 143
>gi|260446968|emb|CBG76250.1| OO_Ba0005L10-OO_Ba0081K17.1 [Oryza officinalis]
Length = 151
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K++K +S +EIP VI+SSEN+ RI R
Sbjct: 78 VNMIITDYWMPGMTGYELLKRVK-ESSQLKEIPVVIMSSENVPNRISR 124
>gi|226499956|ref|NP_001141563.1| uncharacterized protein LOC100273679 [Zea mays]
gi|194705078|gb|ACF86623.1| unknown [Zea mays]
gi|413937888|gb|AFW72439.1| two-component response regulator ARR3 [Zea mays]
Length = 206
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDYCMP MTG EL+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 132 VSMIITDYCMPEMTGYELLKKVK-ESSKLKQIPVVIMSSENVSTRIRR 178
>gi|115461262|ref|NP_001054231.1| Os04g0673300 [Oryza sativa Japonica Group]
gi|32488053|emb|CAE03227.1| OSJNBa0018M05.2 [Oryza sativa Japonica Group]
gi|70663953|emb|CAJ14992.1| OSJNBb0004A17.17 [Oryza sativa Japonica Group]
gi|71273485|emb|CAI79410.1| Type A response regulator 6 [Oryza sativa Indica Group]
gi|87116376|dbj|BAE79347.1| typeA response regulator 6 [Oryza sativa Japonica Group]
gi|113565802|dbj|BAF16145.1| Os04g0673300 [Oryza sativa Japonica Group]
gi|118790854|tpd|FAA00267.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|125592032|gb|EAZ32382.1| hypothetical protein OsJ_16592 [Oryza sativa Japonica Group]
gi|215765394|dbj|BAG87091.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 170
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K++K +S +EIP VI+SSEN+ RI R
Sbjct: 97 VNMIITDYWMPGMTGYELLKRVK-ESSQLKEIPVVIMSSENVPNRISR 143
>gi|195641278|gb|ACG40107.1| two-component response regulator ARR3 [Zea mays]
Length = 136
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDYCMP MTG EL+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 62 VSMIITDYCMPEMTGYELLKKVK-ESSKLKQIPVVIMSSENVSTRIRR 108
>gi|357164784|ref|XP_003580165.1| PREDICTED: two-component response regulator ARR4-like [Brachypodium
distachyon]
Length = 137
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S REIP VI+SSEN+ RI+R
Sbjct: 63 VSMIITDYWMPDMTGYELLKKVK-ESSKLREIPVVIMSSENVPTRINR 109
>gi|408795928|gb|AFU91979.1| response regulator 1 protein [Pinus pinaster]
Length = 184
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V + V++IITDYCMPGMTG +L++++K +S ++IP VI+SSEN+ +R R
Sbjct: 65 VDNIQVNMIITDYCMPGMTGYDLLRRVK-ESSAVKDIPVVIMSSENVESRKSR 116
>gi|413919924|gb|AFW59856.1| cytokinin response regulator2 [Zea mays]
Length = 159
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K +K +S R IP VI+SSEN+ RI R
Sbjct: 86 VNMIITDYWMPGMTGYELLKHVK-ESSALRAIPVVIMSSENVPTRISR 132
>gi|162458152|ref|NP_001104849.1| cytokinin response regulator2 [Zea mays]
gi|5689236|dbj|BAA82873.1| ZmRR2 [Zea mays]
gi|6009897|dbj|BAA85113.1| response regulator 2 [Zea mays]
Length = 157
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++IITDY MPGMTG EL+K +K +S R IP VI+SSEN+ RI R
Sbjct: 84 VNMIITDYWMPGMTGYELLKHVK-ESSALRAIPVVIMSSENVPTRISR 130
>gi|296090341|emb|CBI40160.3| unnamed protein product [Vitis vinifera]
Length = 123
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIITDY MPGMTG +L++KIK +S + ++IP VI+SSENI +RI R
Sbjct: 59 VNLIITDYSMPGMTGYDLLRKIK-ESTSLKDIPVVIMSSENIPSRITR 105
>gi|195611056|gb|ACG27358.1| RR6 - Corn type-A response regulator [Zea mays]
Length = 156
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MPGMTG EL+K++K +S R IP VI+SSEN+ RI R
Sbjct: 83 VSMIITDYWMPGMTGYELLKRVK-ESAALRGIPVVIMSSENVSTRITR 129
>gi|168002910|ref|XP_001754156.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694710|gb|EDQ81057.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L ++LI+TDYCMP MTG +L+K++K + +EIP V++SSEN RI+R
Sbjct: 59 LDINLIMTDYCMPEMTGYDLLKRVKADTSALKEIPVVVMSSENDSNRIER 108
>gi|359492520|ref|XP_002284504.2| PREDICTED: two-component response regulator ARR9-like [Vitis
vinifera]
Length = 240
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 41/49 (83%), Gaps = 2/49 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
L V+LI+TDYCMPGM+G +L+K++K +++++P V++SSEN+ +RI+
Sbjct: 108 LKVNLIMTDYCMPGMSGYDLLKRVK--GSSWKDVPVVVMSSENVPSRIN 154
>gi|168001998|ref|XP_001753701.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695108|gb|EDQ81453.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 132
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G S + + + + + V+LI+TDYCMP MTG +L+K +K ++ F+E+P +++SSEN
Sbjct: 47 GLSESCSTSVKANKVTVNLIMTDYCMPEMTGYDLLKIVKAETSAFKELPVIVMSSENDSN 106
Query: 79 RIDR 82
RI R
Sbjct: 107 RIKR 110
>gi|260765421|gb|ACX49754.1| cytokinin response regulator 11 [Zea mays]
Length = 156
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MPGMTG EL+K++K +S R IP VI+SSEN+ RI R
Sbjct: 83 VSMIITDYWMPGMTGYELLKRVK-ESAALRGIPVVIMSSENVSTRITR 129
>gi|226497480|ref|NP_001147402.1| RR6 - Corn type-A response regulator [Zea mays]
gi|223946411|gb|ACN27289.1| unknown [Zea mays]
gi|414584832|tpg|DAA35403.1| TPA: response regulatorResponse regulator 1 [Zea mays]
Length = 156
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MPGMTG EL+K++K +S R IP VI+SSEN+ RI R
Sbjct: 83 VSMIITDYWMPGMTGYELLKRVK-ESAALRGIPVVIMSSENVSTRITR 129
>gi|222629233|gb|EEE61365.1| hypothetical protein OsJ_15511 [Oryza sativa Japonica Group]
Length = 526
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S +EIP VI+SSEN+ RI+R
Sbjct: 60 VSMIITDYWMPEMTGYELLKKVK-ESSRLKEIPVVIMSSENVSTRINR 106
>gi|162458935|ref|NP_001104854.1| aberrant phyllotaxy1 [Zea mays]
gi|11041692|dbj|BAB17300.1| response regulator [Zea mays]
gi|414586309|tpg|DAA36880.1| TPA: aberrant phyllotaxy1 [Zea mays]
Length = 135
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KKIK +S +EIP VI+SSEN+ RI+R
Sbjct: 61 VSMIITDYWMPEMTGYELLKKIK-ESSRLKEIPVVIMSSENVPTRINR 107
>gi|242076534|ref|XP_002448203.1| hypothetical protein SORBIDRAFT_06g022960 [Sorghum bicolor]
gi|241939386|gb|EES12531.1| hypothetical protein SORBIDRAFT_06g022960 [Sorghum bicolor]
Length = 134
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S +EIP VI+SSEN+ RI+R
Sbjct: 60 VSMIITDYWMPEMTGYELLKKVK-ESSRLKEIPVVIMSSENVPTRINR 106
>gi|225465889|ref|XP_002266250.1| PREDICTED: two-component response regulator ARR9 [Vitis vinifera]
Length = 150
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIIT Y MPGMTG +L+KKIK +S + + IP VI+SSENI +RI+R
Sbjct: 64 VNLIITYYSMPGMTGYDLLKKIK-ESTSLKGIPVVIMSSENIPSRINR 110
>gi|168043274|ref|XP_001774110.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674517|gb|EDQ61024.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 131
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
++LI+TDYCMP MTG +L+K++K + +EIP V++SSEN RI+R
Sbjct: 58 INLIMTDYCMPEMTGYDLLKRVKADTSALKEIPVVVMSSENDSIRIER 105
>gi|33330866|gb|AAQ10676.1| type-A response regulator [Catharanthus roseus]
Length = 154
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LIITDYC P MTG EL+KKIK +S ++IP +++SSENI RI +
Sbjct: 75 LKVNLIITDYCKPEMTGYELLKKIK-ESSILKDIPVIVMSSENIPTRIHK 123
>gi|115459496|ref|NP_001053348.1| Os04g0524300 [Oryza sativa Japonica Group]
gi|71273483|emb|CAI79409.1| Type A response regulator 5 [Oryza sativa Indica Group]
gi|87116378|dbj|BAE79348.1| typeA response regulator 5 [Oryza sativa Japonica Group]
gi|113564919|dbj|BAF15262.1| Os04g0524300 [Oryza sativa Japonica Group]
gi|116310946|emb|CAH67883.1| OSIGBa0153E02-OSIGBa0093I20.12 [Oryza sativa Indica Group]
gi|118790846|tpd|FAA00266.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|215741219|dbj|BAG97714.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195239|gb|EEC77666.1| hypothetical protein OsI_16696 [Oryza sativa Indica Group]
Length = 134
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S +EIP VI+SSEN+ RI+R
Sbjct: 60 VSMIITDYWMPEMTGYELLKKVK-ESSRLKEIPVVIMSSENVSTRINR 106
>gi|242067106|ref|XP_002454842.1| hypothetical protein SORBIDRAFT_04g038320 [Sorghum bicolor]
gi|241934673|gb|EES07818.1| hypothetical protein SORBIDRAFT_04g038320 [Sorghum bicolor]
Length = 134
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+V +IITDYCMP M+G EL+K++K +S REIP V++SSEN RI R
Sbjct: 55 SVHMIITDYCMPEMSGYELLKRVK-ESAELREIPVVLMSSENSPTRIRR 102
>gi|296090340|emb|CBI40159.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LIIT Y MPGMTG +L+KKIK +S + + IP VI+SSENI +RI+R
Sbjct: 64 VNLIITYYSMPGMTGYDLLKKIK-ESTSLKGIPVVIMSSENIPSRINR 110
>gi|309951230|emb|CBX43985.1| putative A-type response regulator 3 [Populus x canadensis]
Length = 242
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ V+LI+TDYCMPGM+G +L+K++K ++++P V++SSENI +RI
Sbjct: 110 MKVNLIMTDYCMPGMSGYDLLKRVK--GSYWKDVPVVVMSSENIPSRI 155
>gi|359828774|gb|AEV76989.1| type A response regulator 5, partial [Triticum aestivum]
Length = 119
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S +EIP VI+SSEN+ RI R
Sbjct: 45 VSMIITDYWMPEMTGYELLKKVK-ESSKLKEIPVVIMSSENVPTRISR 91
>gi|57834122|emb|CAE05717.2| OSJNBb0065J09.13 [Oryza sativa Japonica Group]
Length = 137
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S +EIP VI+SSEN+ RI+R
Sbjct: 60 VSMIITDYWMPEMTGYELLKKVK-ESSRLKEIPVVIMSSENVSTRINR 106
>gi|356549441|ref|XP_003543102.1| PREDICTED: two-component response regulator ARR8-like [Glycine max]
Length = 211
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 43/52 (82%), Gaps = 2/52 (3%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+++ + V++I+TDYCMPGM+G +L+K+IK S ++++P VI+SSEN+ +RI
Sbjct: 76 QLNGIKVNMIMTDYCMPGMSGYDLLKRIKGSS--WKDVPVVIMSSENVPSRI 125
>gi|224066817|ref|XP_002302230.1| type-a response regulator [Populus trichocarpa]
gi|222843956|gb|EEE81503.1| type-a response regulator [Populus trichocarpa]
Length = 243
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ V+LI+TDYCMPGM+G +L+K++K ++++P V++SSENI +RI
Sbjct: 111 MKVNLIMTDYCMPGMSGYDLLKRVK--GSYWKDVPVVVMSSENIPSRI 156
>gi|242065846|ref|XP_002454212.1| hypothetical protein SORBIDRAFT_04g026750 [Sorghum bicolor]
gi|241934043|gb|EES07188.1| hypothetical protein SORBIDRAFT_04g026750 [Sorghum bicolor]
Length = 151
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 77 VSMIITDYWMPEMTGYELLKKVK-ESSKLKQIPVVIMSSENVSTRISR 123
>gi|224124816|ref|XP_002319429.1| type-a response regulator [Populus trichocarpa]
gi|222857805|gb|EEE95352.1| type-a response regulator [Populus trichocarpa]
Length = 131
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LIITDYCM GMTG EL+K+IK EIP V++SSENI RI +
Sbjct: 64 LKVNLIITDYCMRGMTGYELLKRIK-------EIPVVVVSSENIPTRIKQ 106
>gi|255646817|gb|ACU23880.1| unknown [Glycine max]
Length = 235
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 40/48 (83%), Gaps = 2/48 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ V+LI+TDYCMPGM+G +L+K++K S ++++P VI+SSEN+ +RI
Sbjct: 94 IKVNLIMTDYCMPGMSGYDLLKRVKGSS--WKDVPVVIMSSENVPSRI 139
>gi|357142908|ref|XP_003572733.1| PREDICTED: two-component response regulator ARR3-like [Brachypodium
distachyon]
Length = 143
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 69 VSMIITDYWMPEMTGYELLKKVK-ESSKLKQIPVVIMSSENVPTRISR 115
>gi|356515915|ref|XP_003526642.1| PREDICTED: two-component response regulator ARR9-like [Glycine max]
Length = 232
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 40/48 (83%), Gaps = 2/48 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ V+LI+TDYCMPGM+G +L+K++K +++++P VI+SSEN+ +RI
Sbjct: 93 IKVNLIMTDYCMPGMSGYDLLKRVK--GSSWKDVPVVIMSSENVPSRI 138
>gi|356509391|ref|XP_003523433.1| PREDICTED: two-component response regulator ARR9-like [Glycine max]
Length = 235
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 40/48 (83%), Gaps = 2/48 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ V+LI+TDYCMPGM+G +L+K++K S ++++P VI+SSEN+ +RI
Sbjct: 94 IKVNLIMTDYCMPGMSGYDLLKRVKGSS--WKDVPVVIMSSENVPSRI 139
>gi|217075290|gb|ACJ86005.1| unknown [Medicago truncatula]
gi|388493820|gb|AFK34976.1| unknown [Medicago truncatula]
Length = 235
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 39/46 (84%), Gaps = 2/46 (4%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
V+LI+TDYCMPGM+G +L+K++K +++++P V++SSEN+ +RI
Sbjct: 95 VNLIMTDYCMPGMSGYDLLKRVK--GSSWKDVPVVVMSSENVPSRI 138
>gi|388511879|gb|AFK44001.1| unknown [Medicago truncatula]
Length = 235
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 39/46 (84%), Gaps = 2/46 (4%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
V+LI+TDYCMPGM+G +L+K++K +++++P V++SSEN+ +RI
Sbjct: 95 VNLIMTDYCMPGMSGYDLLKRVK--GSSWKDVPVVVMSSENVPSRI 138
>gi|388511259|gb|AFK43691.1| unknown [Lotus japonicus]
Length = 224
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 45/59 (76%), Gaps = 3/59 (5%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+SP E+ + V+LI+TD+CMPGM+G +L+K++K S ++++P V++SSEN+ +RI
Sbjct: 79 ISPQQVEQ-EGIKVNLIMTDFCMPGMSGYDLLKRVKGSS--WKDVPVVVMSSENVPSRI 134
>gi|115447443|ref|NP_001047501.1| Os02g0631700 [Oryza sativa Japonica Group]
gi|49389191|dbj|BAD26481.1| putative response regulator [Oryza sativa Japonica Group]
gi|87116382|dbj|BAE79350.1| typeA response regulator 11 [Oryza sativa Japonica Group]
gi|113537032|dbj|BAF09415.1| Os02g0631700 [Oryza sativa Japonica Group]
gi|118790875|tpd|FAA00270.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|218191220|gb|EEC73647.1| hypothetical protein OsI_08171 [Oryza sativa Indica Group]
gi|222623289|gb|EEE57421.1| hypothetical protein OsJ_07618 [Oryza sativa Japonica Group]
Length = 147
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG EL+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 73 VSMIITDYWMPEMTGYELLKKVK-ESSKLKKIPVVIMSSENVPTRISR 119
>gi|168064728|ref|XP_001784311.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664142|gb|EDQ50873.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 149
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
++ L ++LI+TDY MP MTG +L+K++K +S +EIP V++SSEN RI R
Sbjct: 60 QIKKLDINLIMTDYFMPEMTGYDLLKRVKAKSSALKEIPVVLMSSENDSHRIRR 113
>gi|125600088|gb|EAZ39664.1| hypothetical protein OsJ_24093 [Oryza sativa Japonica Group]
Length = 212
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KKIK +S ++IP VI+SSEN+ RI R
Sbjct: 138 VSMIITDYWMPEMTGYDLLKKIK-ESSELKQIPVVIMSSENVPTRISR 184
>gi|110617744|gb|ABG78591.1| response regulator [Oryza sativa Japonica Group]
Length = 210
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KKIK +S ++IP VI+SSEN+ RI R
Sbjct: 136 VSMIITDYWMPEMTGYDLLKKIK-ESSELKQIPVVIMSSENVPTRISR 182
>gi|22831009|dbj|BAC15873.1| putative response regulator [Oryza sativa Japonica Group]
gi|71273487|emb|CAI79411.1| Type A response regulator 7 [Oryza sativa Indica Group]
gi|87116384|dbj|BAE79351.1| typeA response regulator 7 [Oryza sativa Japonica Group]
gi|118790860|tpd|FAA00268.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
Length = 206
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KKIK +S ++IP VI+SSEN+ RI R
Sbjct: 132 VSMIITDYWMPEMTGYDLLKKIK-ESSELKQIPVVIMSSENVPTRISR 178
>gi|302755905|ref|XP_002961376.1| type A response regulator [Selaginella moellendorffii]
gi|300170035|gb|EFJ36636.1| type A response regulator [Selaginella moellendorffii]
Length = 220
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+ + +IITDYCMP MTG +L+K++K S + +EIP VI+SSEN+ RI+
Sbjct: 109 IQISMIITDYCMPHMTGYDLLKRVKGVS-SLKEIPVVIMSSENVEQRIN 156
>gi|302798272|ref|XP_002980896.1| hypothetical protein SELMODRAFT_444661 [Selaginella moellendorffii]
gi|300151435|gb|EFJ18081.1| hypothetical protein SELMODRAFT_444661 [Selaginella moellendorffii]
Length = 222
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+ + +IITDYCMP MTG +L+K++K S + +EIP VI+SSEN+ RI+
Sbjct: 111 IQISMIITDYCMPHMTGYDLLKRVKGVS-SLKEIPVVIMSSENVEQRIN 158
>gi|125558184|gb|EAZ03720.1| hypothetical protein OsI_25852 [Oryza sativa Indica Group]
Length = 211
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KKIK +S ++IP VI+SSEN+ RI R
Sbjct: 137 VSMIITDYWMPEMTGYDLLKKIK-ESSELKQIPVVIMSSENVPTRISR 183
>gi|109631206|gb|ABG35779.1| SRR200 [Striga asiatica]
Length = 158
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
VDLIITDY MP +TG +L++KIK +S ++IP VI+SSENI +RI+
Sbjct: 71 VDLIITDYSMPALTGYDLLRKIK-ESEILKDIPVVIMSSENIPSRIN 116
>gi|162463265|ref|NP_001104838.1| cytokinin response regulator1 [Zea mays]
gi|4512216|dbj|BAA75253.1| response regulator [Zea mays]
gi|6009895|dbj|BAA85112.1| response regulator 1 [Zea mays]
Length = 157
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MPGMTG EL+K +K +S R IP VI+SSEN+ RI R
Sbjct: 84 VSMIITDYWMPGMTGYELLKCVK-ESAALRGIPVVIMSSENVPTRITR 130
>gi|32479678|emb|CAE02513.1| P0076O17.11 [Oryza sativa Japonica Group]
Length = 108
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
EE A+D+++TDYCMP MTG EL+K IK S + IP +++SSEN RI R
Sbjct: 55 EEGKEQAIDMVLTDYCMPEMTGYELLKAIKALS-PLKPIPVIVMSSENEPQRISR 108
>gi|115450024|ref|NP_001048613.1| Os02g0830200 [Oryza sativa Japonica Group]
gi|48716336|dbj|BAD22948.1| putative response regulator [Oryza sativa Japonica Group]
gi|71273479|emb|CAI79407.1| Type A response regulator 3 [Oryza sativa Indica Group]
gi|87116380|dbj|BAE79349.1| typeA response regulator 3 [Oryza sativa Japonica Group]
gi|113538144|dbj|BAF10527.1| Os02g0830200 [Oryza sativa Japonica Group]
gi|118790834|tpd|FAA00265.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|125541719|gb|EAY88114.1| hypothetical protein OsI_09552 [Oryza sativa Indica Group]
gi|125584256|gb|EAZ25187.1| hypothetical protein OsJ_08987 [Oryza sativa Japonica Group]
Length = 131
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDYCMP MTG +L+K++K +S +EIP V++SSEN RI R
Sbjct: 56 VHMIITDYCMPEMTGFDLLKRVK-ESAELKEIPVVLMSSENSPTRIRR 102
>gi|115458564|ref|NP_001052882.1| Os04g0442300 [Oryza sativa Japonica Group]
gi|87116392|dbj|BAE79355.1| typeA response regulator 1 [Oryza sativa Japonica Group]
gi|113564453|dbj|BAF14796.1| Os04g0442300 [Oryza sativa Japonica Group]
gi|118790814|tpd|FAA00263.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|215704280|dbj|BAG93120.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740726|dbj|BAG97382.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 231
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
EE A+D+++TDYCMP MTG EL+K IK S + IP +++SSEN RI R
Sbjct: 55 EEGKEQAIDMVLTDYCMPEMTGYELLKAIKALS-PLKPIPVIVMSSENEPQRISR 108
>gi|71273475|emb|CAI79405.1| Type A response regulator 1 [Oryza sativa Indica Group]
gi|218194921|gb|EEC77348.1| hypothetical protein OsI_16028 [Oryza sativa Indica Group]
Length = 231
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
EE A+D+++TDYCMP MTG EL+K IK S + IP +++SSEN RI R
Sbjct: 55 EEGKEQAIDMVLTDYCMPEMTGYELLKAIKALS-PLKPIPVIVMSSENEPQRISR 108
>gi|357149551|ref|XP_003575151.1| PREDICTED: two-component response regulator ARR3-like [Brachypodium
distachyon]
Length = 226
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P EE ++D+++TDYCMP MTG +L+K IK + + IP V++SSEN RI+R
Sbjct: 59 PQAQEEQQRRSIDIVLTDYCMPEMTGYDLLKAIKALN-SPNPIPVVVMSSENEPQRINR 116
>gi|388505720|gb|AFK40926.1| unknown [Lotus japonicus]
Length = 224
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+SP E+ + V+LI+TD+CMPG +G +L+K++K S ++++P V++SSEN+ +RI
Sbjct: 79 ISPQQVEQ-EGIKVNLIMTDFCMPGKSGYDLLKRVKGSS--WKDVPVVVMSSENVPSRI 134
>gi|359828770|gb|AEV76987.1| type A response regulator 1, partial [Triticum aestivum]
Length = 209
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK S + IP +++SSEN RI R
Sbjct: 55 AVDMVLTDYCMPEMTGYDLLKAIKAMS-PLKPIPVIVMSSENEPQRISR 102
>gi|218194915|gb|EEC77342.1| hypothetical protein OsI_16022 [Oryza sativa Indica Group]
Length = 65
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
A+D+++TDYCMP MTG EL+K IK S + IP +++SSEN RI R
Sbjct: 18 AIDMVLTDYCMPEMTGYELLKAIKALS-PLKPIPVIVMSSENEPQRISR 65
>gi|222628933|gb|EEE61065.1| hypothetical protein OsJ_14923 [Oryza sativa Japonica Group]
Length = 231
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
A+D+++TDYCMP MTG EL+K IK S + IP +++SSEN RI R
Sbjct: 61 AIDMVLTDYCMPEMTGYELLKAIKALS-PLKPIPVIVMSSENEPQRISR 108
>gi|357116980|ref|XP_003560254.1| PREDICTED: two-component response regulator ARR9-like [Brachypodium
distachyon]
Length = 172
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 98 VSMIITDYWMPEMTGYDLLKKVK-ESSELKQIPVVIMSSENVPTRITR 144
>gi|242061964|ref|XP_002452271.1| hypothetical protein SORBIDRAFT_04g022780 [Sorghum bicolor]
gi|241932102|gb|EES05247.1| hypothetical protein SORBIDRAFT_04g022780 [Sorghum bicolor]
Length = 168
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIK-LQSFTFREIPTV 69
RLM D D S E L VD+++TDYCMP MTG +L+K IK L S T IP V
Sbjct: 60 RLME--QDSLDSSAAHANE---LTVDIVLTDYCMPEMTGYDLLKAIKALSSPT--PIPVV 112
Query: 70 IISSENILARIDR 82
++SSEN RI R
Sbjct: 113 VMSSENEPQRISR 125
>gi|242043834|ref|XP_002459788.1| hypothetical protein SORBIDRAFT_02g010680 [Sorghum bicolor]
gi|241923165|gb|EER96309.1| hypothetical protein SORBIDRAFT_02g010680 [Sorghum bicolor]
Length = 168
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KK+K +S ++IP VI+SSEN+ RI R
Sbjct: 93 VSMIITDYWMPEMTGYDLLKKVK-ESSKLKQIPVVIMSSENVPTRITR 139
>gi|226532303|ref|NP_001149732.1| two-component response regulator ARR3 [Zea mays]
gi|195629894|gb|ACG36588.1| two-component response regulator ARR3 [Zea mays]
gi|195650489|gb|ACG44712.1| two-component response regulator ARR3 [Zea mays]
gi|414884446|tpg|DAA60460.1| TPA: two-component response regulator ARR3 [Zea mays]
Length = 148
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V +IITDY MP MTG +L+KK+K +S + IP VI+SSEN+ RI R
Sbjct: 73 VSMIITDYWMPEMTGYDLLKKVK-ESSKLKRIPVVIMSSENVPTRITR 119
>gi|242049694|ref|XP_002462591.1| hypothetical protein SORBIDRAFT_02g028660 [Sorghum bicolor]
gi|241925968|gb|EER99112.1| hypothetical protein SORBIDRAFT_02g028660 [Sorghum bicolor]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LI+TDYCMPGMTG +L+ ++K +S + IP VI+SS+NI R+ +
Sbjct: 51 VNLILTDYCMPGMTGYDLLLEVK-ESPKLKHIPVVIMSSDNIPERMQK 97
>gi|162459462|ref|NP_001104858.1| response regulator 7 [Zea mays]
gi|12060390|dbj|BAB20582.1| response regulator 7 [Zea mays]
Length = 242
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
RLM G D D + +D+++TDYCMP MTG +L+K IK S + IP V+
Sbjct: 60 RLMEQGGQ-LDSCAADANRI---TIDIVLTDYCMPEMTGYDLLKAIKALS-SPNPIPVVV 114
Query: 71 ISSENILARIDR 82
+SSEN RI R
Sbjct: 115 MSSENEPQRISR 126
>gi|194697208|gb|ACF82688.1| unknown [Zea mays]
gi|413922696|gb|AFW62628.1| response regulator 7 [Zea mays]
Length = 242
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
RLM G D D + +D+++TDYCMP MTG +L+K IK S + IP V+
Sbjct: 60 RLMEQGGQ-LDSCAADANRI---TIDIVLTDYCMPEMTGYDLLKAIKALS-SPNPIPVVV 114
Query: 71 ISSENILARIDR 82
+SSEN RI R
Sbjct: 115 MSSENEPQRISR 126
>gi|242081261|ref|XP_002445399.1| hypothetical protein SORBIDRAFT_07g015180 [Sorghum bicolor]
gi|241941749|gb|EES14894.1| hypothetical protein SORBIDRAFT_07g015180 [Sorghum bicolor]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V LI+TDYCMPGMTG +L+ ++K +S IP VI+SS+NI RI +
Sbjct: 51 VKLILTDYCMPGMTGYDLLMEVK-ESPKLNHIPVVIMSSDNIPERIQK 97
>gi|449464160|ref|XP_004149797.1| PREDICTED: two-component response regulator ARR9-like [Cucumis
sativus]
Length = 236
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 39/49 (79%), Gaps = 2/49 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
+ V+LI+TD+CMPGM+G +L+K++K +++IP V++SSEN +RI+
Sbjct: 85 VKVNLIMTDFCMPGMSGYDLLKRLK--GSYWKDIPVVVMSSENEPSRIN 131
>gi|297599428|ref|NP_001047142.2| Os02g0557800 [Oryza sativa Japonica Group]
gi|255671003|dbj|BAF09056.2| Os02g0557800, partial [Oryza sativa Japonica Group]
Length = 306
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 8 LLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIP 67
LL R D SP + A+D+++TDYCMP MTG +L+K IK + IP
Sbjct: 111 LLGRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALG-SPNPIP 169
Query: 68 TVIISSENILARIDR 82
V++SSEN RI R
Sbjct: 170 VVVMSSENEPQRISR 184
>gi|125539898|gb|EAY86293.1| hypothetical protein OsI_07664 [Oryza sativa Indica Group]
Length = 205
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 8 LLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIP 67
LL R D SP + A+D+++TDYCMP MTG +L+K IK + IP
Sbjct: 57 LLGRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALG-SPNPIP 115
Query: 68 TVIISSENILARIDR 82
V++SSEN RI R
Sbjct: 116 VVVMSSENEPQRISR 130
>gi|46390908|dbj|BAD16423.1| putative response regulator 7 [Oryza sativa Japonica Group]
gi|71273477|emb|CAI79406.1| Type A response regulator 2 [Oryza sativa Indica Group]
gi|87116394|dbj|BAE79356.1| typeA response regulator 2 [Oryza sativa Japonica Group]
gi|118790824|tpd|FAA00264.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|215697882|dbj|BAG92075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 8 LLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIP 67
LL R D SP + A+D+++TDYCMP MTG +L+K IK + IP
Sbjct: 57 LLGRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALG-SPNPIP 115
Query: 68 TVIISSENILARIDR 82
V++SSEN RI R
Sbjct: 116 VVVMSSENEPQRISR 130
>gi|357163783|ref|XP_003579845.1| PREDICTED: two-component response regulator ARR9-like [Brachypodium
distachyon]
Length = 224
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+D+++TDYCMP MTG +L+K IK S + IP +++SSEN RI R
Sbjct: 64 IDMVLTDYCMPEMTGYDLLKAIKALS-PLKPIPVIVMSSENEPQRISR 110
>gi|222623065|gb|EEE57197.1| hypothetical protein OsJ_07146 [Oryza sativa Japonica Group]
Length = 158
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 8 LLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIP 67
LL R D SP + A+D+++TDYCMP MTG +L+K IK + IP
Sbjct: 3 LLGRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALG-SPNPIP 61
Query: 68 TVIISSENILARIDR 82
V++SSEN RI R
Sbjct: 62 VVVMSSENEPQRISR 76
>gi|414870674|tpg|DAA49231.1| TPA: hypothetical protein ZEAMMB73_704016 [Zea mays]
Length = 123
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V+LI+TDYCMPGMTG +L+ ++K +S + IP V++SS++I R+ +
Sbjct: 51 VNLILTDYCMPGMTGYDLLMEVK-ESPKLKHIPVVVMSSDHIPQRMQK 97
>gi|242073184|ref|XP_002446528.1| hypothetical protein SORBIDRAFT_06g017550 [Sorghum bicolor]
gi|241937711|gb|EES10856.1| hypothetical protein SORBIDRAFT_06g017550 [Sorghum bicolor]
Length = 249
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
A+D+++TDYCMP MTG +L+K IK + + IP +++SSE+ RI R
Sbjct: 68 AIDMVLTDYCMPEMTGYDLLKAIKALN-PLKPIPVIVMSSEDEPQRISR 115
>gi|195656043|gb|ACG47489.1| RR1 - Corn type-A response regulator [Zea mays]
Length = 232
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK + IP V++SSE+ RI R
Sbjct: 67 AVDMVLTDYCMPEMTGYDLLKAIKALN-PLEPIPVVVMSSEDEPQRISR 114
>gi|224034623|gb|ACN36387.1| unknown [Zea mays]
gi|413918403|gb|AFW58335.1| RR1-Corn type-A response regulator [Zea mays]
Length = 232
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK + IP V++SSE+ RI R
Sbjct: 67 AVDMVLTDYCMPEMTGYDLLKAIKALN-PLEPIPVVVMSSEDEPQRISR 114
>gi|413918401|gb|AFW58333.1| hypothetical protein ZEAMMB73_046346 [Zea mays]
Length = 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK + IP V++SSE+ RI R
Sbjct: 5 AVDMVLTDYCMPEMTGYDLLKAIKALN-PLEPIPVVVMSSEDEPQRISR 52
>gi|413918400|gb|AFW58332.1| hypothetical protein ZEAMMB73_046346 [Zea mays]
Length = 168
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK + IP V++SSE+ RI R
Sbjct: 3 AVDMVLTDYCMPEMTGYDLLKAIKALN-PLEPIPVVVMSSEDEPQRISR 50
>gi|223942921|gb|ACN25544.1| unknown [Zea mays]
gi|413918402|gb|AFW58334.1| hypothetical protein ZEAMMB73_046346 [Zea mays]
Length = 179
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK + IP V++SSE+ RI R
Sbjct: 14 AVDMVLTDYCMPEMTGYDLLKAIKALN-PLEPIPVVVMSSEDEPQRISR 61
>gi|195651747|gb|ACG45341.1| RR1 - Corn type-A response regulator [Zea mays]
Length = 238
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
A+D+++TDYCMP MTG +L+K IK + + IP +++SSE+ RI R
Sbjct: 65 AIDMVLTDYCMPEMTGYDLLKAIKALN-PLKPIPVIVMSSEDEPQRISR 112
>gi|219363715|ref|NP_001137062.1| uncharacterized protein LOC100217235 [Zea mays]
gi|194698206|gb|ACF83187.1| unknown [Zea mays]
gi|224029529|gb|ACN33840.1| unknown [Zea mays]
gi|414587101|tpg|DAA37672.1| TPA: RR1-Corn type-A response regulator [Zea mays]
Length = 244
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
A+D+++TDYCMP MTG +L+K IK + + IP +++SSE+ RI R
Sbjct: 65 AIDMVLTDYCMPEMTGYDLLKAIKALN-PLKPIPVIVMSSEDEPQRISR 112
>gi|195651177|gb|ACG45056.1| RR1 - Corn type-A response regulator [Zea mays]
Length = 233
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
AVD+++TDYCMP MTG +L+K IK + IP V++SSE+ RI R
Sbjct: 65 AVDIVLTDYCMPEMTGYDLLKAIKALN-PLEPIPVVVMSSEDEPQRISR 112
>gi|27260981|dbj|BAC45098.1| putative response regulator [Oryza sativa Japonica Group]
gi|40253364|dbj|BAD05296.1| putative response regulator [Oryza sativa Japonica Group]
gi|71273489|emb|CAI79412.1| Type A response regulator 8 [Oryza sativa Indica Group]
gi|87116396|dbj|BAE79357.1| typeA response regulator 8 [Oryza sativa Japonica Group]
gi|118790867|tpd|FAA00269.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
Length = 121
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VD+I++DYCMP MTG L+ ++K +S +P VI SS+NI RI +
Sbjct: 49 VDMIVSDYCMPDMTGYNLLMEVK-KSPKLAHLPVVIASSDNIPERIRK 95
>gi|222640462|gb|EEE68594.1| hypothetical protein OsJ_27121 [Oryza sativa Japonica Group]
Length = 123
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+DTE VD+I++DYCMP MTG L+ ++K +S +P VI SS+NI RI +
Sbjct: 45 SDTEH----DVDMIVSDYCMPDMTGYNLLMEVK-KSPKLAHLPVVIASSDNIPERIRK 97
>gi|242075916|ref|XP_002447894.1| hypothetical protein SORBIDRAFT_06g017560 [Sorghum bicolor]
gi|241939077|gb|EES12222.1| hypothetical protein SORBIDRAFT_06g017560 [Sorghum bicolor]
Length = 194
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+D+++TDYCMP MTG +L++ IK + + IP +++SSE+ RI R
Sbjct: 69 IDMVLTDYCMPEMTGYDLLRAIKALN-PLKPIPVIVMSSEDEPQRISR 115
>gi|125561361|gb|EAZ06809.1| hypothetical protein OsI_29053 [Oryza sativa Indica Group]
Length = 185
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VD+I++DYCMP MTG L+ ++K +S T +P VI S+NI RI +
Sbjct: 113 VDMIVSDYCMPDMTGYNLLMEVK-KSPTLAHLPVVIAFSDNIPERIRK 159
>gi|87116398|dbj|BAE79358.1| typeA response regulator 12 [Oryza sativa Japonica Group]
gi|118790879|tpd|FAA00271.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
Length = 121
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++I++DYCMP MTG +L+ ++K +S +P VI SS+NI RI +
Sbjct: 49 VNMIVSDYCMPDMTGYDLLMEVK-KSPKLAHLPVVIASSDNIPERIRK 95
>gi|356554367|ref|XP_003545518.1| PREDICTED: uncharacterized protein LOC100788701 [Glycine max]
Length = 325
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 39 ITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
IT YCMP MT +L+KKIK +S R I VI+SSEN+ +RI++
Sbjct: 283 ITYYCMPSMTSYDLLKKIK-ESLCLRNILVVIMSSENVPSRINK 325
>gi|219888705|gb|ACL54727.1| unknown [Zea mays]
gi|413951287|gb|AFW83936.1| hypothetical protein ZEAMMB73_670408 [Zea mays]
Length = 144
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 44 MPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
MPGMTG +L+K++K S + ++IP VI+SSEN+ ARI R
Sbjct: 1 MPGMTGYDLLKRVK-GSSSLKDIPVVIMSSENVPARISR 38
>gi|357496037|ref|XP_003618307.1| Two-component response regulator ARR9 [Medicago truncatula]
gi|355493322|gb|AES74525.1| Two-component response regulator ARR9 [Medicago truncatula]
Length = 207
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 40/92 (43%)
Query: 29 EVHV-LAVDLIITDYCMPGMTGCELIKKIK------------------------------ 57
EVH + V+LII DYCMPGMTG +L++KIK
Sbjct: 59 EVHGDVDVNLIIADYCMPGMTGYDLLRKIKGARKVNLGRLKLKIATKSKLRRLGRVVFLG 118
Query: 58 --------LQSF-TFREIPTVIISSENILARI 80
L+ TF++IP VI+SSEN+ +RI
Sbjct: 119 AKITTLGNLEGIQTFKDIPVVIMSSENVSSRI 150
>gi|255564944|ref|XP_002523465.1| receptor histidine kinase, putative [Ricinus communis]
gi|223537293|gb|EEF38924.1| receptor histidine kinase, putative [Ricinus communis]
Length = 185
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 19 GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
G D + +D+I+TDYCMP M G +L+ +K S + IP VIISSE
Sbjct: 59 GLSQDKVDKSTYNDQKIDIILTDYCMPEMNGYDLLMAVKGHS-NVKSIPVVIISSEYDPQ 117
Query: 79 RIDR 82
RI R
Sbjct: 118 RISR 121
>gi|198276106|ref|ZP_03208637.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
gi|198270918|gb|EDY95188.1| response regulator receiver domain protein [Bacteroides plebeius DSM
17135]
Length = 1237
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 17 SDGFDLSPTDTEEVHVL-----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+D FDL+ + E +L +D+I++D MPGM G EL KKIK + F + IP +++
Sbjct: 1003 TDHFDLTEASSGETALLQLEDKKIDIIVSDIMMPGMNGFELCKKIK-ERFETKHIPVILL 1061
Query: 72 SSE 74
+++
Sbjct: 1062 TAK 1064
>gi|163800159|ref|ZP_02194060.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
sp. AND4]
gi|159175602|gb|EDP60396.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
sp. AND4]
Length = 1171
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 19 GFDLSPTDTEEVHVL--AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
+++ E + VL + DLI+TDY MP M G ELIK+I+ S + +IP +I +++N
Sbjct: 968 NYEIVENGIEALKVLNSSFDLILTDYHMPKMNGLELIKEIRSSSNEYNKIPIIICTADN 1026
>gi|94966174|emb|CAJ29968.1| response regulator [Zea mays]
gi|413922105|gb|AFW62037.1| response regulator [Zea mays]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
VDLI+TDYCMP MTG +L++++K +S + IP VI ++ I RI
Sbjct: 52 VDLILTDYCMPDMTGYDLLREVK-ESPRLKHIPVVITCTDVIPERI 96
>gi|27260986|dbj|BAC45103.1| response regulator-like protein [Oryza sativa Japonica Group]
gi|125603232|gb|EAZ42557.1| hypothetical protein OsJ_27123 [Oryza sativa Japonica Group]
Length = 167
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++I++DYCMP MTG +L+ ++K +S +P VI SS+NI RI +
Sbjct: 95 VNMIVSDYCMPDMTGYDLLMEVK-KSPKLAHLPVVIASSDNIPERIRK 141
>gi|125561365|gb|EAZ06813.1| hypothetical protein OsI_29056 [Oryza sativa Indica Group]
Length = 167
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++I++DYCMP MTG +L+ ++K +S +P VI SS+NI RI +
Sbjct: 95 VNMIVSDYCMPDMTGYDLLMEVK-KSPKLAHLPVVIASSDNIPERIRK 141
>gi|357138640|ref|XP_003570898.1| PREDICTED: two-component response regulator ARR8-like [Brachypodium
distachyon]
Length = 133
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++I++DYCMP M G +L+ ++K S IP VI SS+NI RI +
Sbjct: 61 VNMIVSDYCMPEMNGYDLLMEVK-NSPPLAHIPVVIASSDNIPERIQK 107
>gi|389579963|ref|ZP_10169990.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfobacter postgatei 2ac9]
gi|389401598|gb|EIM63820.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfobacter postgatei 2ac9]
Length = 141
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
VDLI+TDY MP M G +K +K ++ F+EIP ++IS+E ++I
Sbjct: 50 VDLIMTDYNMPEMNGLSFLKTVKTEAL-FKEIPVIVISTEGNDSKI 94
>gi|383642353|ref|ZP_09954759.1| multi-sensor hybrid histidine kinase [Sphingomonas elodea ATCC
31461]
Length = 858
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 9/60 (15%)
Query: 19 GFDLSPTDTEEVHV------LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
G+ + P D+ E + L DL++TD+ MPGMTG EL ++++ + E+PT+I+S
Sbjct: 768 GYQVQPADSAEAALRMLDQGLVPDLLLTDHLMPGMTGTELAREVRTR---LGEVPTLIVS 824
>gi|406597747|ref|YP_006748877.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii ATCC 27126]
gi|407688694|ref|YP_006803867.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406375068|gb|AFS38323.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii ATCC 27126]
gi|407292074|gb|AFT96386.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 122
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 19 GFDLSPTDTEEVHVLAVD-----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
G+ ++ +++ E + A++ LIITD MPGM G ELIK +K QS FR P +++++
Sbjct: 25 GYTVTKSESAEAAMTALESISPKLIITDLNMPGMNGIELIKTLKQQS-KFRFTPMLMLTT 83
Query: 74 ENILAR 79
E+ +R
Sbjct: 84 ESQQSR 89
>gi|78777869|ref|YP_394184.1| response regulator receiver domain-containing protein
[Sulfurimonas denitrificans DSM 1251]
gi|78498409|gb|ABB44949.1| response regulator receiver domain protein (CheY-like)
[Sulfurimonas denitrificans DSM 1251]
Length = 124
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG +G+ + T+ E +D++ITD+ MP M G EL+KK++ + F+++P +++++
Sbjct: 32 GDGVEGWGVLDTNPE------IDMLITDWNMPEMNGLELVKKVRADA-RFKDLPIIMVTT 84
Query: 74 ENILARI 80
E A +
Sbjct: 85 EGGKAEV 91
>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
turnerae T7901]
gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
[Teredinibacter turnerae T7901]
Length = 235
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREI 66
R+ + +D L D +E H + VD LI+ D+ MPG++G E +++K Q T REI
Sbjct: 20 RVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMPGVSGIEFARRLKSQEVT-REI 78
Query: 67 PTVIISSE 74
P ++++++
Sbjct: 79 PIIMLTAK 86
>gi|255545370|ref|XP_002513745.1| Two-component response regulator ARR9, putative [Ricinus communis]
gi|223546831|gb|EEF48328.1| Two-component response regulator ARR9, putative [Ricinus communis]
Length = 229
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+ V+LI+TDYCMPGM+G +L+K++K ++++P V++ E
Sbjct: 117 MKVNLIMTDYCMPGMSGYDLLKRVK--GSPWKDVPVVVMCLE 156
>gi|87116400|dbj|BAE79359.1| typeA response regulator 13 [Oryza sativa Japonica Group]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++I++DYCMP MTG +L+ ++K +S +P +I SS+NI RI +
Sbjct: 49 VNMIVSDYCMPEMTGYDLLMEVK-KSPRLVHLPVIIASSDNIPERIRK 95
>gi|226875187|gb|ACO88941.1| cytokinin A-type response regulator 1 [Vitis vinifera]
Length = 65
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Query: 51 ELIKKIKLQSFTFREIPTVIISSENILARIDR 82
EL+KKIK +S TFRE P VI+SSENIL RIDR
Sbjct: 1 ELLKKIK-ESSTFRETPVVIMSSENILTRIDR 31
>gi|408419249|ref|YP_006760663.1| chemotaxis protein Y, response regulator CheY [Desulfobacula
toluolica Tol2]
gi|405106462|emb|CCK79959.1| CheY: chemotaxis protein Y, response regulator [Desulfobacula
toluolica Tol2]
Length = 141
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++G D +L D +D++ITDY MP M G E IK IK Q ++IP V+IS+
Sbjct: 36 ANGKDALELMKND-------WIDIVITDYNMPVMNGMEFIKTIK-QDDLLKDIPVVVIST 87
Query: 74 E 74
E
Sbjct: 88 E 88
>gi|297726345|ref|NP_001175536.1| Os08g0358800 [Oryza sativa Japonica Group]
gi|38637522|dbj|BAD03775.1| putative response regulator [Oryza sativa Japonica Group]
gi|118790937|tpd|FAA00272.1| TPA: A-type response regulator [Oryza sativa Japonica Group]
gi|125603143|gb|EAZ42468.1| hypothetical protein OsJ_27037 [Oryza sativa Japonica Group]
gi|255678389|dbj|BAH94264.1| Os08g0358800 [Oryza sativa Japonica Group]
Length = 135
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
V++I++DYCMP MTG +L+ ++K +S +P +I SS+NI RI +
Sbjct: 63 VNMIVSDYCMPEMTGYDLLMEVK-KSPRLVHLPVIIASSDNIPERIRK 109
>gi|449457395|ref|XP_004146434.1| PREDICTED: two-component response regulator ARR17-like [Cucumis
sativus]
gi|449526784|ref|XP_004170393.1| PREDICTED: two-component response regulator ARR17-like [Cucumis
sativus]
Length = 162
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQS 60
V++IITDYCMPGM+G EL+KKIK S
Sbjct: 88 VNMIITDYCMPGMSGYELLKKIKRSS 113
>gi|390946352|ref|YP_006410112.1| signal transduction histidine kinase [Alistipes finegoldii DSM 17242]
gi|390422921|gb|AFL77427.1| signal transduction histidine kinase [Alistipes finegoldii DSM 17242]
Length = 1377
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 40/57 (70%), Gaps = 5/57 (8%)
Query: 23 SPTDTEE-VHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
+ +D EE + +L+ VDL+++D MPGM G EL ++IK Q+F + IP ++++++N
Sbjct: 1147 TASDGEEALRILSRQPVDLVVSDIMMPGMDGIELCRRIK-QTFEYCHIPVILLTAKN 1202
>gi|291514619|emb|CBK63829.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
Length = 1377
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
VDL+++D MPGM G EL ++IK Q+F + IP ++++++N
Sbjct: 1163 VDLVVSDIMMPGMDGIELCRRIK-QTFEYCHIPVILLTAKN 1202
>gi|197124726|ref|YP_002136677.1| response regulator receiver modulated PilZ sensor protein
[Anaeromyxobacter sp. K]
gi|196174575|gb|ACG75548.1| response regulator receiver modulated PilZ sensor protein
[Anaeromyxobacter sp. K]
Length = 487
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 1 MTTTNGVLLSRLMSD--GSDGFD-LSPTDTEE------VHVLAVDLIITDYCMPGMTGCE 51
+ + LL R+++D G GF+ L+ D E VLA+DL++TD MPGM G E
Sbjct: 358 LVVDDDALLRRMLADALGGRGFEVLTAADATEGLRVLAEEVLALDLLVTDVHMPGMDGAE 417
Query: 52 LIKKIK 57
L+++I+
Sbjct: 418 LVRRIR 423
>gi|29349590|ref|NP_813093.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29341500|gb|AAO79287.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1431
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLI+ D MPGM G E+ +K+K FT IP +++++
Sbjct: 1199 ADGTSGF-------EKASTYDADLIVCDVLMPGMNGFEVTRKLK-NEFTTSHIPIILLTA 1250
Query: 74 ENI 76
NI
Sbjct: 1251 LNI 1253
>gi|298383853|ref|ZP_06993414.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
gi|298263457|gb|EFI06320.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
Length = 1431
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLI+ D MPGM G E+ +K+K FT IP +++++
Sbjct: 1199 ADGTSGF-------EKASTYDADLIVCDVLMPGMNGFEVTRKLK-NEFTTSHIPIILLTA 1250
Query: 74 ENI 76
NI
Sbjct: 1251 LNI 1253
>gi|383120524|ref|ZP_09941252.1| hypothetical protein BSIG_2467 [Bacteroides sp. 1_1_6]
gi|251840424|gb|EES68506.1| hypothetical protein BSIG_2467 [Bacteroides sp. 1_1_6]
Length = 1431
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLI+ D MPGM G E+ +K+K FT IP +++++
Sbjct: 1199 ADGTSGF-------EKASTYDADLIVCDVLMPGMNGFEVTRKLK-NEFTTSHIPIILLTA 1250
Query: 74 ENI 76
NI
Sbjct: 1251 LNI 1253
>gi|94966176|emb|CAJ29969.1| response regulator [Zea mays]
Length = 124
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
VDLI+TDYCMP MTG +L++++K +S + IP V ++ I RI
Sbjct: 52 VDLILTDYCMPDMTGYDLLREVK-ESPRLKHIPVVXTCTDVIPERI 96
>gi|86160629|ref|YP_467414.1| response regulator receiver domain-containing protein
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85777140|gb|ABC83977.1| response regulator receiver domain protein (CheY-like)
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 487
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 1 MTTTNGVLLSRLMSD--GSDGFD-LSPTDTEE------VHVLAVDLIITDYCMPGMTGCE 51
+ + LL R+++D G GF+ L+ D E VLA+DL++TD MPGM G E
Sbjct: 358 LVVDDDALLRRMLADALGGRGFEVLTAADATEGLRVLAEEVLALDLLVTDVRMPGMDGAE 417
Query: 52 LIKKIK 57
L+++I+
Sbjct: 418 LVRRIR 423
>gi|386822343|ref|ZP_10109558.1| signal transduction histidine kinase [Joostella marina DSM 19592]
gi|386423589|gb|EIJ37420.1| signal transduction histidine kinase [Joostella marina DSM 19592]
Length = 1344
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEE-----VHVLAVDLIITDYCMPGMTGCELIKKIKLQ 59
N LL L +D + + + +T E + + + L+I+D MPGM+G E+ KKIK
Sbjct: 1104 NEDLLDFLANDLENDYSIVKANTAEKALETIQIENIQLVISDVMMPGMSGFEMCKKIK-T 1162
Query: 60 SFTFREIPTVIISSENIL 77
SF IP ++++S++ +
Sbjct: 1163 SFETSHIPVILLTSKSAI 1180
>gi|410464253|ref|ZP_11317706.1| response regulator (CheY-like domain and winged-helix DNA-binding
domain containing protein) [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409982639|gb|EKO39075.1| response regulator (CheY-like domain and winged-helix DNA-binding
domain containing protein) [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 122
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG DG + TD + VDLIITD MP M G IK ++ Q +R+IP V++S+
Sbjct: 33 EDGLDGLEKLYTDQQ------VDLIITDINMPRMDGITFIKTVREQDL-YRDIPIVVLST 85
Query: 74 E 74
E
Sbjct: 86 E 86
>gi|29349586|ref|NP_813089.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29341496|gb|AAO79283.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1433
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1201 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-SDFATSHIPIILLTA 1252
Query: 74 EN 75
N
Sbjct: 1253 LN 1254
>gi|298383847|ref|ZP_06993408.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
gi|298263451|gb|EFI06314.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
Length = 1433
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1201 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-SDFATSHIPIILLTA 1252
Query: 74 EN 75
N
Sbjct: 1253 LN 1254
>gi|383120521|ref|ZP_09941249.1| hypothetical protein BSIG_2471 [Bacteroides sp. 1_1_6]
gi|251840428|gb|EES68510.1| hypothetical protein BSIG_2471 [Bacteroides sp. 1_1_6]
Length = 1433
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1201 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-SDFATSHIPIILLTA 1252
Query: 74 EN 75
N
Sbjct: 1253 LN 1254
>gi|372209578|ref|ZP_09497380.1| integral membrane sensor hybrid histidine kinase
[Flavobacteriaceae bacterium S85]
Length = 245
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DL+ITDY MP M G ELIK+I+ +++ F P ++I++
Sbjct: 56 IDLVITDYLMPKMNGYELIKEIRKRNYNF---PIIVITA 91
>gi|357463579|ref|XP_003602071.1| Two-component response regulator ARR9 [Medicago truncatula]
gi|355491119|gb|AES72322.1| Two-component response regulator ARR9 [Medicago truncatula]
Length = 128
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTF-REIP 67
V+LI+TDYCMPGM+G +L+K++K++ +F R +P
Sbjct: 94 KVNLIMTDYCMPGMSGYDLLKRVKVKISSFPRHLP 128
>gi|239907979|ref|YP_002954720.1| chemotaxis protein CheY [Desulfovibrio magneticus RS-1]
gi|239797845|dbj|BAH76834.1| chemotaxis protein CheY [Desulfovibrio magneticus RS-1]
Length = 122
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG DG + TD + VDLIITD MP M G IK ++ Q +R+IP V++S+
Sbjct: 33 EDGLDGLEKLYTDQQ------VDLIITDINMPRMDGITFIKTVREQDI-YRDIPIVVLST 85
Query: 74 E 74
E
Sbjct: 86 E 86
>gi|380693921|ref|ZP_09858780.1| two-component system sensor histidine kinase/response regulator
[Bacteroides faecis MAJ27]
Length = 1390
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1157 ADGTAGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-SDFATSHIPIILLTA 1208
Query: 74 EN 75
N
Sbjct: 1209 LN 1210
>gi|153870733|ref|ZP_02000072.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152072802|gb|EDN69929.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 922
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+GS+GF E++ DLIITD MPGM G ELI++I+ S F+ +P +++S+
Sbjct: 656 NGSEGF-------EKIREFNPDLIITDLVMPGMDGFELIRQIR-NSPDFQRLPILVLSA 706
>gi|334366973|ref|ZP_08515888.1| response regulator receiver domain protein [Alistipes sp. HGB5]
gi|313156850|gb|EFR56290.1| response regulator receiver domain protein [Alistipes sp. HGB5]
Length = 792
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
VDLI++D MPGM G EL ++IK Q+F + IP ++++++N
Sbjct: 578 VDLIVSDIMMPGMDGIELCRRIK-QTFEYCHIPVILLTAKN 617
>gi|380693925|ref|ZP_09858784.1| two-component system sensor histidine kinase/response regulator
[Bacteroides faecis MAJ27]
Length = 1432
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGM+G E+ +K+K FT IP +++++
Sbjct: 1200 ADGTSGF-------EKASTYDADLIICDVLMPGMSGFEVTRKLK-NEFTTSHIPIILLTA 1251
Query: 74 ENI 76
+I
Sbjct: 1252 LDI 1254
>gi|357633416|ref|ZP_09131294.1| response regulator receiver protein [Desulfovibrio sp. FW1012B]
gi|386391833|ref|ZP_10076614.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Desulfovibrio sp. U5L]
gi|357581970|gb|EHJ47303.1| response regulator receiver protein [Desulfovibrio sp. FW1012B]
gi|385732711|gb|EIG52909.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Desulfovibrio sp. U5L]
Length = 122
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG DG + TD + VDLIITD MP M G IK ++ Q +R+IP V++S+
Sbjct: 33 EDGLDGLEKLYTDPQ------VDLIITDINMPRMDGITFIKTVREQE-VYRDIPIVVLST 85
Query: 74 E 74
E
Sbjct: 86 E 86
>gi|293369330|ref|ZP_06615915.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|292635497|gb|EFF54004.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1401
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1171 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1222
Query: 74 EN 75
N
Sbjct: 1223 LN 1224
>gi|3953605|dbj|BAA34730.1| response regulator 6 [Arabidopsis thaliana]
Length = 162
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 26 DTEEVHV----LAVDLIITDYCMPGMTGCELIKKIK 57
D EE V L V+LI+TDY MPGMTG EL+KKIK
Sbjct: 67 DVEEKSVGFEDLKVNLIMTDYSMPGMTGYELLKKIK 102
>gi|303247352|ref|ZP_07333625.1| response regulator receiver protein [Desulfovibrio fructosovorans
JJ]
gi|302491266|gb|EFL51155.1| response regulator receiver protein [Desulfovibrio fructosovorans
JJ]
Length = 122
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG DG + TD + VDLIITD MP M G IK ++ Q +R+IP V++S+
Sbjct: 33 EDGLDGLEKLYTDPQ------VDLIITDINMPRMDGITFIKTVREQD-AYRDIPIVVLST 85
Query: 74 E 74
E
Sbjct: 86 E 86
>gi|336404076|ref|ZP_08584775.1| hypothetical protein HMPREF0127_02088 [Bacteroides sp. 1_1_30]
gi|335943727|gb|EGN05562.1| hypothetical protein HMPREF0127_02088 [Bacteroides sp. 1_1_30]
Length = 1430
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|299148477|ref|ZP_07041539.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298513238|gb|EFI37125.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1430
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|423294918|ref|ZP_17273045.1| hypothetical protein HMPREF1070_01710 [Bacteroides ovatus CL03T12C18]
gi|392674498|gb|EIY67944.1| hypothetical protein HMPREF1070_01710 [Bacteroides ovatus CL03T12C18]
Length = 1427
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|295086722|emb|CBK68245.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1455
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1225 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1276
Query: 74 EN 75
N
Sbjct: 1277 LN 1278
>gi|237721244|ref|ZP_04551725.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229449040|gb|EEO54831.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1430
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|298482118|ref|ZP_07000306.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298271675|gb|EFI13248.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1430
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|379011725|ref|YP_005269537.1| chemotaxis protein response regulator CheY2 [Acetobacterium
woodii DSM 1030]
gi|375302514|gb|AFA48648.1| chemotaxis protein response regulator CheY2 [Acetobacterium
woodii DSM 1030]
Length = 124
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
++LI D+ MPGM G E +K IK +S F+ IP V++++EN+
Sbjct: 46 IELIFLDWNMPGMNGLEFLKTIK-KSDQFKHIPVVMVTTENM 86
>gi|294643100|ref|ZP_06720934.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294808952|ref|ZP_06767676.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|292641559|gb|EFF59743.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294443833|gb|EFG12576.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 1401
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1171 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1222
Query: 74 EN 75
N
Sbjct: 1223 LN 1224
>gi|262408426|ref|ZP_06084973.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|345508641|ref|ZP_08788267.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229445688|gb|EEO51479.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262353978|gb|EEZ03071.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
Length = 1430
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|383114398|ref|ZP_09935162.1| hypothetical protein BSGG_1429 [Bacteroides sp. D2]
gi|313693894|gb|EFS30729.1| hypothetical protein BSGG_1429 [Bacteroides sp. D2]
Length = 1427
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|160886963|ref|ZP_02067966.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483]
gi|423288935|ref|ZP_17267786.1| hypothetical protein HMPREF1069_02829 [Bacteroides ovatus CL02T12C04]
gi|156107374|gb|EDO09119.1| response regulator receiver domain protein [Bacteroides ovatus ATCC
8483]
gi|392669025|gb|EIY62517.1| hypothetical protein HMPREF1069_02829 [Bacteroides ovatus CL02T12C04]
Length = 1427
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-TDFDTSHIPIILLTA 1251
Query: 74 EN 75
N
Sbjct: 1252 LN 1253
>gi|423294932|ref|ZP_17273059.1| hypothetical protein HMPREF1070_01724 [Bacteroides ovatus CL03T12C18]
gi|392674512|gb|EIY67958.1| hypothetical protein HMPREF1070_01724 [Bacteroides ovatus CL03T12C18]
Length = 1455
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1208 ADGISGF-------ERAQTYDADLIICDVLMPGMTGFEVTKKLK-NEFATSHIPIILLTA 1259
Query: 74 ENI 76
N+
Sbjct: 1260 LNM 1262
>gi|423288921|ref|ZP_17267772.1| hypothetical protein HMPREF1069_02815 [Bacteroides ovatus CL02T12C04]
gi|392669011|gb|EIY62503.1| hypothetical protein HMPREF1069_02815 [Bacteroides ovatus CL02T12C04]
Length = 1455
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1208 ADGISGF-------ERAQTYDADLIICDVLMPGMTGFEVTKKLK-NEFATSHIPIILLTA 1259
Query: 74 ENI 76
N+
Sbjct: 1260 LNM 1262
>gi|383114416|ref|ZP_09935180.1| hypothetical protein BSGG_1412 [Bacteroides sp. D2]
gi|382948579|gb|EFS30712.2| hypothetical protein BSGG_1412 [Bacteroides sp. D2]
Length = 1455
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1208 ADGISGF-------ERAQTYDADLIICDVLMPGMTGFEVTKKLK-NEFATSHIPIILLTA 1259
Query: 74 ENI 76
N+
Sbjct: 1260 LNM 1262
>gi|160886979|ref|ZP_02067982.1| hypothetical protein BACOVA_04993 [Bacteroides ovatus ATCC 8483]
gi|156107390|gb|EDO09135.1| response regulator receiver domain protein [Bacteroides ovatus ATCC
8483]
Length = 1445
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1198 ADGISGF-------ERAQTYDADLIICDVLMPGMTGFEVTKKLK-NEFATSHIPIILLTA 1249
Query: 74 ENI 76
N+
Sbjct: 1250 LNM 1252
>gi|383115299|ref|ZP_09936057.1| hypothetical protein BSGG_2819 [Bacteroides sp. D2]
gi|313695284|gb|EFS32119.1| hypothetical protein BSGG_2819 [Bacteroides sp. D2]
Length = 1436
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1208 ADGTSGF-------EKARSYDADLIICDVLMPGMTGFEVTKKLK-SDFDTSHIPIILLTA 1259
Query: 74 EN 75
N
Sbjct: 1260 LN 1261
>gi|423301904|ref|ZP_17279927.1| hypothetical protein HMPREF1057_03068 [Bacteroides finegoldii
CL09T03C10]
gi|408470995|gb|EKJ89527.1| hypothetical protein HMPREF1057_03068 [Bacteroides finegoldii
CL09T03C10]
Length = 1433
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1198 ADGLSGF-------ERAQTYDADLIICDVLMPGMTGFEVTKKLK-SEFATSHIPIILLTA 1249
Query: 74 ENI 76
N+
Sbjct: 1250 LNM 1252
>gi|337285567|ref|YP_004625040.1| response regulator receiver protein [Thermodesulfatator indicus
DSM 15286]
gi|335358395|gb|AEH44076.1| response regulator receiver protein [Thermodesulfatator indicus
DSM 15286]
Length = 125
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
VDLII+D+ MP MTG EL+KK++ F++IP +++++E
Sbjct: 51 VDLIISDWNMPKMTGIELLKKVRSDD-RFKDIPFLMVTAE 89
>gi|408376036|ref|ZP_11173642.1| metal dependent phosphohydrolase with a response regulator
receiver protein [Agrobacterium albertimagni AOL15]
gi|407750138|gb|EKF61648.1| metal dependent phosphohydrolase with a response regulator
receiver protein [Agrobacterium albertimagni AOL15]
Length = 366
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+ L DLII DY MPGM G ELI +++ Q R++P ++++SE
Sbjct: 41 MQTLQADLIIVDYNMPGMNGVELILRVR-QLSNGRDVPVIMLTSE 84
>gi|456013933|gb|EMF47570.1| sensory box histidine kinase [Planococcus halocryophilus Or1]
Length = 346
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 7 VLLSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTF 63
VLL +L+S+G T +H+L+ VDLI+ D C+ MTG EL ++I+++ FT
Sbjct: 268 VLLRQLLSEGYQAIGAENGQTA-MHLLSYKPVDLIVMDGCLTDMTGDELCRRIRVE-FTL 325
Query: 64 REIPTVIISS 73
E+P +++S+
Sbjct: 326 TELPILMLSN 335
>gi|297819166|ref|XP_002877466.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323304|gb|EFH53725.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 199
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
T E+ +DLIITDY MPGM G +L KKI + F +P +++SS+
Sbjct: 62 TLEIQRDNIDLIITDYYMPGMNGVQLKKKITEK---FGNLPVLVMSSD 106
>gi|168705522|ref|ZP_02737799.1| response regulator receiver protein [Gemmata obscuriglobus UQM
2246]
Length = 147
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 5 NGVLLSRL----MSDGSDGFD----LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKI 56
N + +SRL ++ SDG D PT +D+ D+ MP M G E +K+
Sbjct: 21 NALKMSRLATFEFTEASDGADALTKFDPTK--------IDMCFVDWNMPNMNGVEFVKRA 72
Query: 57 KLQSFTFREIPTVIISSENILARID 81
+ F IP V+++SE +A+I+
Sbjct: 73 RATGTAF-HIPMVMVTSEQTMAKIE 96
>gi|224370519|ref|YP_002604683.1| putative chemotaxis response regulator receiver (CheY-like)
[Desulfobacterium autotrophicum HRM2]
gi|223693236|gb|ACN16519.1| putative chemotaxis response regulator receiver (CheY-like)
[Desulfobacterium autotrophicum HRM2]
Length = 141
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
VD+++TDY MP M G E IK IK + ++IP V+IS+E ++I
Sbjct: 50 VDIVMTDYNMPVMDGLEFIKTIKSNELS-KDIPVVVISTEGNASKI 94
>gi|86133889|ref|ZP_01052471.1| two-component system response regulator [Polaribacter sp. MED152]
gi|85820752|gb|EAQ41899.1| two-component system response regulator [Polaribacter sp. MED152]
Length = 233
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DL+ITDY MP M G EL+ KIK + + F P +II+S
Sbjct: 45 IDLLITDYNMPEMDGFELVSKIKQKKYEF---PIIIITS 80
>gi|297569649|ref|YP_003690993.1| response regulator receiver protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925564|gb|ADH86374.1| response regulator receiver protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 146
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VD+I++D MP M G EL+ +K Q FR IP V I++E+ AR+D
Sbjct: 50 VDVILSDINMPVMGGMELLSTVK-QHEEFRHIPVVFITTESSAARMDE 96
>gi|392308986|ref|ZP_10271520.1| two-component response regulator [Pseudoalteromonas citrea NCIMB
1889]
Length = 300
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
VDLII+D MPGM+G +L++++K + T+ IP +IIS+ N
Sbjct: 48 VDLIISDIRMPGMSGYDLLERLKAKQHTY-AIPVIIISASN 87
>gi|383110698|ref|ZP_09931517.1| hypothetical protein BSGG_1807 [Bacteroides sp. D2]
gi|382949465|gb|EFS31107.2| hypothetical protein BSGG_1807 [Bacteroides sp. D2]
Length = 1341
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V V+ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGKEGY-------EKVKVMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|189425689|ref|YP_001952866.1| Fis family two component sigma-54 specific transcriptional
regulator [Geobacter lovleyi SZ]
gi|189421948|gb|ACD96346.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
Length = 467
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
EE A DL+ITD MPGMTG E+++++K + R++P +II++
Sbjct: 42 EEFSAAAWDLVITDIKMPGMTGLEVLQRVKEKC---RDLPVIIITA 84
>gi|336414748|ref|ZP_08595092.1| hypothetical protein HMPREF1017_02200 [Bacteroides ovatus 3_8_47FAA]
gi|335942118|gb|EGN03966.1| hypothetical protein HMPREF1017_02200 [Bacteroides ovatus 3_8_47FAA]
Length = 1430
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E+ DLII D MPGMTG E+ KK+K F IP +++++
Sbjct: 1200 ADGTSGF-------EKARTYDADLIICDVLMPGMTGFEVTKKLK-SDFDTSHIPIILLTA 1251
>gi|423294473|ref|ZP_17272600.1| hypothetical protein HMPREF1070_01265 [Bacteroides ovatus CL03T12C18]
gi|392675664|gb|EIY69105.1| hypothetical protein HMPREF1070_01265 [Bacteroides ovatus CL03T12C18]
Length = 1341
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V V+ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGKEGY-------EKVKVMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|254459178|ref|ZP_05072600.1| multi-sensor signal transduction histidine kinase [Sulfurimonas
gotlandica GD1]
gi|373868639|ref|ZP_09605037.1| multi-sensor signal transduction histidine kinase [Sulfurimonas
gotlandica GD1]
gi|207084071|gb|EDZ61361.1| multi-sensor signal transduction histidine kinase [Sulfurimonas
gotlandica GD1]
gi|372470740|gb|EHP30944.1| multi-sensor signal transduction histidine kinase [Sulfurimonas
gotlandica GD1]
Length = 639
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++L+ITDY MP M G ELIK ++ + ++IP ++ISS
Sbjct: 170 INLVITDYEMPNMNGLELIKSVR-NNHKLKDIPMIVISS 207
>gi|336415202|ref|ZP_08595543.1| hypothetical protein HMPREF1017_02651 [Bacteroides ovatus 3_8_47FAA]
gi|335941235|gb|EGN03093.1| hypothetical protein HMPREF1017_02651 [Bacteroides ovatus 3_8_47FAA]
Length = 1341
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V V+ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGKEGY-------EKVKVMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|332142405|ref|YP_004428143.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii str. 'Deep ecotype']
gi|327552427|gb|AEA99145.1| Response regulator receiver domain protein (CheY) [Alteromonas
macleodii str. 'Deep ecotype']
Length = 122
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
LIITD MPGM G ELIK +K QS FR P +++++E+ +R
Sbjct: 47 KLIITDLNMPGMNGIELIKTLKQQS-KFRFTPMLMLTTESQQSR 89
>gi|222053660|ref|YP_002536022.1| chemotaxis protein CheA [Geobacter daltonii FRC-32]
gi|221562949|gb|ACM18921.1| CheA signal transduction histidine kinase [Geobacter daltonii
FRC-32]
Length = 685
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 3 TTNGVLLSRLMSDGSD-GFDLSPTDT-EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQS 60
TT + S LM+ G D +S D E+V DL+I+D MPG+TG EL ++++
Sbjct: 576 TTRTMERSILMAHGYDVDIAISGEDALEKVAGTTYDLVISDVMMPGITGFELTRRLRAIE 635
Query: 61 FTFREIPTVIISS 73
+RE+P +I+SS
Sbjct: 636 -KYREVPIIIVSS 647
>gi|257094985|ref|YP_003168626.1| response regulator receiver protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047509|gb|ACV36697.1| response regulator receiver protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 122
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 16 GSDGFDLSPTDTEEVHV------LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
G GF + E + + VDL+ITD MPGM G ELIKK++ +R +P +
Sbjct: 23 GKAGFAVEKAANAEEALKKFSAGVKVDLLITDLNMPGMNGIELIKKVRALP-AYRFLPIL 81
Query: 70 IISSENILAR 79
+++E+ +R
Sbjct: 82 FLTTESQQSR 91
>gi|117925766|ref|YP_866383.1| response regulator receiver protein [Magnetococcus marinus MC-1]
gi|117609522|gb|ABK44977.1| response regulator receiver protein [Magnetococcus marinus MC-1]
Length = 124
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
E VH A DLI+ D MPGM+G E++K +K + T R IP +++++
Sbjct: 43 EMVHSYAPDLILLDVLMPGMSGFEVVKHLKSDAST-RHIPVILVTA 87
>gi|220919447|ref|YP_002494751.1| response regulator receiver modulated PilZ sensor protein
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219957301|gb|ACL67685.1| response regulator receiver modulated PilZ sensor protein
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 487
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 1 MTTTNGVLLSRLMSDG--SDGFD-LSPTDTEE------VHVLAVDLIITDYCMPGMTGCE 51
+ + LL R+++D GF+ L+ D E VLA+DL++TD MPGM G E
Sbjct: 358 LVVDDDALLRRMLADALTGRGFEVLTAADATEGLRVLAEEVLALDLLVTDVRMPGMDGAE 417
Query: 52 LIKKIK 57
L+++I+
Sbjct: 418 LVRRIR 423
>gi|224372199|ref|YP_002606571.1| chemotaxis response regulator [Nautilia profundicola AmH]
gi|223588330|gb|ACM92066.1| chemotaxis response regulator [Nautilia profundicola AmH]
Length = 125
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG + +++ + + + ++ITD+ MP M G EL+KKI+ + +++IP +++++
Sbjct: 32 ADGVEAWEVMQANPD------IGVVITDWNMPNMNGLELVKKIRAEE-KYKDIPIIMVTT 84
Query: 74 E 74
E
Sbjct: 85 E 85
>gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 231
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 14/83 (16%)
Query: 5 NGV--LLSRLMSDGSDGFDLSPTDTEE-VHVLAVD--LIITDYCMPGMTGCELIKKIKLQ 59
NG+ LL+RLM G + + TE +H+ A D L+I D +PG+TG ELIK I+
Sbjct: 14 NGINTLLARLMEKKGYGVVQAYSGTEAMLHIEAKDFQLVILDLMLPGITGEELIKNIR-- 71
Query: 60 SFTFREIPTVIISSENILARIDR 82
+++P ++IS A+ID+
Sbjct: 72 --KTKQMPVIVIS-----AKIDK 87
>gi|114777491|ref|ZP_01452488.1| two component sensor kinase/response regulator hybrid
[Mariprofundus ferrooxydans PV-1]
gi|114552273|gb|EAU54775.1| two component sensor kinase/response regulator hybrid
[Mariprofundus ferrooxydans PV-1]
Length = 125
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
A DL+ITD CMPGM G ELIK ++ + T +P + IS
Sbjct: 55 AFDLLITDICMPGMNGVELIKAVRAHNGT---LPIIAIS 90
>gi|340786172|ref|YP_004751637.1| chemotaxis regulator [Collimonas fungivorans Ter331]
gi|340551439|gb|AEK60814.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Collimonas
fungivorans Ter331]
Length = 124
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ V AVDL++TD+ MP M G +LI++++ Q E P +++++E
Sbjct: 41 QQARVAAVDLVLTDWNMPAMGGGQLIRELR-QMENHAETPILVLTTE 86
>gi|410623873|ref|ZP_11334683.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410156569|dbj|GAC30057.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 229
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++ FD++ E+V DLI+ D+ +PG +G +L KK+K FT REIP +++++
Sbjct: 32 AEDFDVA---LEKVKEPYPDLILLDWMLPGGSGVQLAKKLKQHEFT-REIPVIMLTA 84
>gi|389578765|ref|ZP_10168792.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfobacter postgatei 2ac9]
gi|389400400|gb|EIM62622.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfobacter postgatei 2ac9]
Length = 124
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLII+D+ MP MTG EL+KK++ S +++ P +++++E
Sbjct: 50 IDLIISDWNMPKMTGLELLKKVR-ASDQYKKAPFLMVTAE 88
>gi|87122617|ref|ZP_01078494.1| putative two domain protein: response regulator receiver domain
protein [Marinomonas sp. MED121]
gi|86162075|gb|EAQ63363.1| putative two domain protein: response regulator receiver domain
protein [Marinomonas sp. MED121]
Length = 265
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
A DLIITDY MP M G EL + ++ S F IP +++SSE
Sbjct: 190 AFDLIITDYNMPEMDGRELTEAVR-NSGEFSHIPVLMVSSE 229
>gi|163847880|ref|YP_001635924.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222525754|ref|YP_002570225.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
gi|163669169|gb|ABY35535.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222449633|gb|ACM53899.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
Length = 131
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 7 VLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
++L RLM D + G+D+ ++ ++ + V L+ITDY MPGM G +L IK
Sbjct: 22 IILHRLMRDLTGGYDIITVNSGADALAQIALRKVPLVITDYNMPGMNGLQLAAAIK 77
>gi|71906195|ref|YP_283782.1| response regulator receiver [Dechloromonas aromatica RCB]
gi|71845816|gb|AAZ45312.1| Response regulator receiver [Dechloromonas aromatica RCB]
Length = 266
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
VDL+ITDY MP M G EL + I+ QS+ E+P ++++SE + R+
Sbjct: 191 VDLVITDYNMPEMDGRELTEYIRTQSWQ-AEVPVLMVTSEQNMGRL 235
>gi|374301365|ref|YP_005053004.1| response regulator receiver protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332554301|gb|EGJ51345.1| response regulator receiver protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 120
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
VD+IITD MP M G ELIK+++ Q+ ++ IP +++++E+
Sbjct: 46 VDMIITDLNMPNMDGIELIKQVRAQA-AYKFIPIIMLTTES 85
>gi|88706905|ref|ZP_01104604.1| Adenylyl cyclase class-3/4/guanylyl cyclase [Congregibacter
litoralis KT71]
gi|88698827|gb|EAQ95947.1| Adenylyl cyclase class-3/4/guanylyl cyclase [Congregibacter
litoralis KT71]
Length = 495
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSF 61
N LL+R ++ +P+ E + +LA VD+++ D MPGM G E++++IK +
Sbjct: 152 NRALLARYLTRSGHFVVTAPSGEEALEMLANADVDVVLLDRMMPGMDGREVLRRIKAEP- 210
Query: 62 TFREIPTVIISSE 74
R P ++IS E
Sbjct: 211 RLRATPVIMISGE 223
>gi|344943770|ref|ZP_08783056.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacter tundripaludum SV96]
gi|344259428|gb|EGW19701.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacter tundripaludum SV96]
Length = 424
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 8 LLSRLMSDGSDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFT 62
+LS ++ G G+++ P EV + ++ DLI+ D MPGM G E+ +++K T
Sbjct: 23 VLSEILQSG--GYNVRPAINGEVALKSIAYNLPDLILLDIRMPGMDGYEICRQLKNDPMT 80
Query: 63 FREIPTVIISSEN 75
REIP + IS+ N
Sbjct: 81 -REIPVIFISALN 92
>gi|428318925|ref|YP_007116807.1| adenylate/guanylate cyclase with GAF sensor(s) [Oscillatoria
nigro-viridis PCC 7112]
gi|428242605|gb|AFZ08391.1| adenylate/guanylate cyclase with GAF sensor(s) [Oscillatoria
nigro-viridis PCC 7112]
Length = 552
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 2 TTTNGVLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKI 56
T N LL R++ +G+ + P + + A DLI+ D MP + G EL KK+
Sbjct: 21 TPDNLRLLIRILQ--KNGYKVRPVTNGFSALDAIQSSAPDLILLDIMMPDIDGYELCKKL 78
Query: 57 KLQSFTFREIPTVIISS 73
K QS F+EIP + +S+
Sbjct: 79 KAQS-QFKEIPIIFLSA 94
>gi|189461865|ref|ZP_03010650.1| hypothetical protein BACCOP_02531 [Bacteroides coprocola DSM 17136]
gi|189431459|gb|EDV00444.1| response regulator receiver domain protein [Bacteroides coprocola DSM
17136]
Length = 1427
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG+ G E V DLII+D MPG +G EL +K+K F IP +++++
Sbjct: 1205 SDGTSGL-------ERAKVYDADLIISDVLMPGCSGFELTRKLK-NDFNTSHIPIILLTA 1256
Query: 74 EN 75
N
Sbjct: 1257 LN 1258
>gi|254417427|ref|ZP_05031168.1| hypothetical protein MC7420_1537 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196175770|gb|EDX70793.1| hypothetical protein MC7420_1537 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 125
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+I+TD MPGM+G EL +++K T +IP VI SS+N IDR
Sbjct: 52 DVIVTDVVMPGMSGFELCRRLKTHPVT-EKIPIVICSSKN--QEIDR 95
>gi|218256920|ref|ZP_03474405.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM
18315]
gi|218225884|gb|EEC98534.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM
18315]
Length = 1312
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLIITD MP M G LI +IK FT R IP +++S++
Sbjct: 1106 DLIITDIMMPSMDGFALISRIKSDKFT-RHIPLIVVSAK 1143
>gi|423344555|ref|ZP_17322266.1| hypothetical protein HMPREF1077_03696 [Parabacteroides johnsonii
CL02T12C29]
gi|409212677|gb|EKN05715.1| hypothetical protein HMPREF1077_03696 [Parabacteroides johnsonii
CL02T12C29]
Length = 1350
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLIITD MP M G LI +IK FT R IP +++S++
Sbjct: 1144 DLIITDIMMPSMDGFALISRIKSDKFT-RHIPLIVVSAK 1181
>gi|149194056|ref|ZP_01871154.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
TB-2]
gi|149136009|gb|EDM24487.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
TB-2]
Length = 395
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
+D++ITD MP + G +LIK I+ + +T E+P ++ISS++
Sbjct: 162 IDIVITDLLMPNLNGNDLIKHIR-KKYTMSELPIIVISSQD 201
>gi|94266280|ref|ZP_01289985.1| TPR repeat:Response regulator receiver [delta proteobacterium
MLMS-1]
gi|93453131|gb|EAT03602.1| TPR repeat:Response regulator receiver [delta proteobacterium
MLMS-1]
Length = 393
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D I++DY MP M+G EL+ K++ + T R+IP ++I++E
Sbjct: 63 IDFIVSDYFMPHMSGTELLNKVRAERAT-RDIPFLMITAE 101
>gi|357167771|ref|XP_003581325.1| PREDICTED: two-component response regulator ARR4-like
[Brachypodium distachyon]
Length = 81
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFRE 65
V +IITDY MP MTG L+KKIK+Q RE
Sbjct: 51 VSMIITDYWMPEMTGYNLLKKIKMQVHDCRE 81
>gi|423725303|ref|ZP_17699443.1| hypothetical protein HMPREF1078_03337 [Parabacteroides merdae
CL09T00C40]
gi|409234931|gb|EKN27755.1| hypothetical protein HMPREF1078_03337 [Parabacteroides merdae
CL09T00C40]
Length = 1351
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLIITD MP M G LI +IK FT R IP +++S++
Sbjct: 1145 DLIITDIMMPSMDGFALISRIKSDKFT-RHIPLIVVSAK 1182
>gi|423348198|ref|ZP_17325882.1| hypothetical protein HMPREF1060_03554 [Parabacteroides merdae
CL03T12C32]
gi|409214300|gb|EKN07310.1| hypothetical protein HMPREF1060_03554 [Parabacteroides merdae
CL03T12C32]
Length = 1351
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLIITD MP M G LI +IK FT R IP +++S++
Sbjct: 1145 DLIITDIMMPSMDGFALISRIKSDKFT-RHIPLIVVSAK 1182
>gi|262405093|ref|ZP_06081643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646474|ref|ZP_06724113.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
gi|294808662|ref|ZP_06767396.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
gi|345508206|ref|ZP_08787840.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229444558|gb|EEO50349.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262355968|gb|EEZ05058.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638187|gb|EFF56566.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
gi|294444101|gb|EFG12834.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
Length = 1341
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|154494827|ref|ZP_02033832.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184]
gi|154085377|gb|EDN84422.1| response regulator receiver domain protein [Parabacteroides merdae
ATCC 43184]
Length = 1313
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLIITD MP M G LI +IK FT R IP +++S++
Sbjct: 1107 DLIITDIMMPSMDGFALISRIKSDKFT-RHIPLIVVSAK 1144
>gi|210134575|ref|YP_002301014.1| chemotaxis protein [Helicobacter pylori P12]
gi|383749979|ref|YP_005425082.1| chemotaxis protein [Helicobacter pylori ELS37]
gi|384897114|ref|YP_005772542.1| chemotaxis protein [Helicobacter pylori Lithuania75]
gi|210132543|gb|ACJ07534.1| chemotaxis protein [Helicobacter pylori P12]
gi|317012219|gb|ADU82827.1| chemotaxis protein [Helicobacter pylori Lithuania75]
gi|380874725|gb|AFF20506.1| chemotaxis protein [Helicobacter pylori ELS37]
Length = 124
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRADS-RFKEIPIIMITTEGGKAEV 91
>gi|251797582|ref|YP_003012313.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2]
gi|247545208|gb|ACT02227.1| two component transcriptional regulator, AraC family
[Paenibacillus sp. JDR-2]
Length = 539
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQ 59
E++H ++D++ITD MPGM+G +LI +IK Q
Sbjct: 42 EQLHQFSIDIVITDIRMPGMSGLQLISEIKRQ 73
>gi|67906691|gb|AAY82777.1| nitrogen regulation protein nr(II) [uncultured bacterium
eBACred22E04]
Length = 303
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLIITD MPGM+G E + K+ S F EIPT+II++
Sbjct: 46 DLIITDIKMPGMSGLEFLDKV---SEKFPEIPTIIITA 80
>gi|293371658|ref|ZP_06618069.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
gi|336406548|ref|ZP_08587199.1| hypothetical protein HMPREF0127_04512 [Bacteroides sp. 1_1_30]
gi|292633355|gb|EFF51925.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
gi|335934450|gb|EGM96446.1| hypothetical protein HMPREF0127_04512 [Bacteroides sp. 1_1_30]
Length = 1341
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|384108216|ref|ZP_10009112.1| response regulator [Treponema sp. JC4]
gi|383870211|gb|EID85815.1| response regulator [Treponema sp. JC4]
Length = 248
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 7 VLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
++L L S +D F++ ++ E + VDL++ DY MP M G E++++I+ ++
Sbjct: 132 MMLRSLYSWLNDSFNIHAANSGLAALEFLRQNDVDLVLLDYEMPLMNGKEVLQEIRTSTY 191
Query: 62 TFREIPTVIISSEN 75
RE+P + ++++N
Sbjct: 192 ENRELPVMFLTAKN 205
>gi|160885605|ref|ZP_02066608.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
gi|156109227|gb|EDO10972.1| putative flagellar protein FliS [Bacteroides ovatus ATCC 8483]
Length = 1341
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|410464166|ref|ZP_11317627.1| response regulator (CheY-like receiver, AAA-type ATPase and
DNA-binding domain containing protein) [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409982714|gb|EKO39142.1| response regulator (CheY-like receiver, AAA-type ATPase and
DNA-binding domain containing protein) [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 125
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEEVHVLAV---DLIITDYCMPGMTGCELIKKIKLQSF 61
GVL L SDG++ + + + VLAV D +I+D+ MP M G EL+++++ Q
Sbjct: 14 RGVLRKMLGSDGAEVLE-AHDGKHALEVLAVEPVDCVISDWNMPRMKGIELLRRVR-QDA 71
Query: 62 TFREIPTVIISSENI 76
+P V++++E +
Sbjct: 72 ALAHLPFVMVTAEAM 86
>gi|406951421|gb|EKD81366.1| hypothetical protein ACD_39C01840G0001 [uncultured bacterium]
Length = 124
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+L+ITD MP M G ELIK ++ ++ +FR IP +++S+E +I R
Sbjct: 48 ELVITDLNMPNMDGVELIKALRSKA-SFRFIPILVLSTEGQQEKIQR 93
>gi|298482475|ref|ZP_07000661.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298271454|gb|EFI13029.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1341
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|299147467|ref|ZP_07040532.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298514745|gb|EFI38629.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1341
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|295088146|emb|CBK69669.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1341
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|237719620|ref|ZP_04550101.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229450889|gb|EEO56680.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1341
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|407684769|ref|YP_006799943.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii str. 'English Channel 673']
gi|407246380|gb|AFT75566.1| Response regulator receiver domain-containing protein (CheY)
[Alteromonas macleodii str. 'English Channel 673']
Length = 122
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 19 GFDLSPTDTEEVHVLAVD-----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
G+ ++ +++ E + A++ LIITD MPGM G ELIK +K QS FR +++++
Sbjct: 25 GYTVTKSESAEAAMTALESISPKLIITDLNMPGMNGIELIKTLKQQS-KFRFTLMLMLTT 83
Query: 74 ENILAR 79
E+ +R
Sbjct: 84 ESQQSR 89
>gi|423215167|ref|ZP_17201695.1| hypothetical protein HMPREF1074_03227 [Bacteroides xylanisolvens
CL03T12C04]
gi|392692430|gb|EIY85668.1| hypothetical protein HMPREF1074_03227 [Bacteroides xylanisolvens
CL03T12C04]
Length = 1341
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|423290231|ref|ZP_17269080.1| hypothetical protein HMPREF1069_04123 [Bacteroides ovatus CL02T12C04]
gi|392665618|gb|EIY59141.1| hypothetical protein HMPREF1069_04123 [Bacteroides ovatus CL02T12C04]
Length = 1341
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G+ E+V ++ DL+I+D MPGM G EL KIK + IP V++++
Sbjct: 1112 SDGEEGY-------EKVKMMQPDLVISDIMMPGMPGTELCAKIK-NNIETCHIPVVLLTA 1163
>gi|315127663|ref|YP_004069666.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
gi|315016177|gb|ADT69515.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
Length = 299
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEEVHV--LAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
N ++L + +SD D + ++ + V VDLII D MPGM G E++ ++K S +
Sbjct: 16 NRIILEKTLSDEHDVYLVTSGEDALAFVKHTQVDLIILDIMMPGMNGYEVLVQLKENSIS 75
Query: 63 FREIPTVIISSEN 75
+ IP + IS+ N
Sbjct: 76 -QAIPIIFISANN 87
>gi|88798985|ref|ZP_01114566.1| CheY-like receiver protein [Reinekea blandensis MED297]
gi|88778212|gb|EAR09406.1| CheY-like receiver protein [Reinekea sp. MED297]
Length = 124
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL++KI+ + +P +++++E
Sbjct: 47 DFVVTDWNMPGMTGIELLQKIRADE-RLKSVPVLMVTAE 84
>gi|420409752|ref|ZP_14908898.1| response regulator [Helicobacter pylori NQ4200]
gi|420411969|ref|ZP_14911098.1| response regulator [Helicobacter pylori NQ4228]
gi|420449895|ref|ZP_14948761.1| response regulator [Helicobacter pylori Hp H-45]
gi|420459901|ref|ZP_14958700.1| response regulator [Helicobacter pylori Hp A-27]
gi|393027627|gb|EJB28715.1| response regulator [Helicobacter pylori NQ4228]
gi|393029866|gb|EJB30946.1| response regulator [Helicobacter pylori NQ4200]
gi|393069212|gb|EJB70010.1| response regulator [Helicobacter pylori Hp H-45]
gi|393077003|gb|EJB77752.1| response regulator [Helicobacter pylori Hp A-27]
Length = 113
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRADS-RFKEIPIIMITTEGGKAEV 80
>gi|444918533|ref|ZP_21238602.1| hypothetical protein D187_01348 [Cystobacter fuscus DSM 2262]
gi|444709712|gb|ELW50712.1| hypothetical protein D187_01348 [Cystobacter fuscus DSM 2262]
Length = 188
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NIL 77
DLIITD CMP M G EL ++++ + R IP +I SSE N+L
Sbjct: 47 DLIITDVCMPHMNGLELCRRLRTDA-RLRAIPRIIHSSEVNLL 88
>gi|309789887|ref|ZP_07684465.1| response regulator receiver [Oscillochloris trichoides DG-6]
gi|308228094|gb|EFO81744.1| response regulator receiver [Oscillochloris trichoides DG6]
Length = 127
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 7 VLLSRLMSDGSDGFDLSPTD-----TEEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
++L RLM D + G+D+ + ++ + V L+ITDY MPGM G +L IK
Sbjct: 22 IILHRLMRDLTGGYDIVTVNGGAEALAQIALRPVPLVITDYNMPGMNGLQLAAAIK 77
>gi|395226465|ref|ZP_10404940.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Thiovulum sp. ES]
gi|394445309|gb|EJF06245.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Thiovulum sp. ES]
Length = 233
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 12/70 (17%)
Query: 6 GVLLSRLMS--DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTF 63
G+ + S +G +G D+ + +DL+ITDY MP M+G +L+K+I+ +
Sbjct: 32 GIFFKEVFSAKNGKEGLDIFNKER-------IDLVITDYVMPVMSGYDLVKEIRKED--- 81
Query: 64 REIPTVIISS 73
++ P VI+SS
Sbjct: 82 KKTPIVIMSS 91
>gi|423311663|ref|ZP_17289600.1| hypothetical protein HMPREF1058_00212 [Bacteroides vulgatus
CL09T03C04]
gi|392690308|gb|EIY83578.1| hypothetical protein HMPREF1058_00212 [Bacteroides vulgatus
CL09T03C04]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|423238920|ref|ZP_17220036.1| hypothetical protein HMPREF1065_00659 [Bacteroides dorei CL03T12C01]
gi|392647331|gb|EIY41032.1| hypothetical protein HMPREF1065_00659 [Bacteroides dorei CL03T12C01]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|423227791|ref|ZP_17214197.1| hypothetical protein HMPREF1063_00017 [Bacteroides dorei CL02T00C15]
gi|423243053|ref|ZP_17224129.1| hypothetical protein HMPREF1064_00335 [Bacteroides dorei CL02T12C06]
gi|392637538|gb|EIY31404.1| hypothetical protein HMPREF1063_00017 [Bacteroides dorei CL02T00C15]
gi|392645928|gb|EIY39647.1| hypothetical protein HMPREF1064_00335 [Bacteroides dorei CL02T12C06]
Length = 1400
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
Length = 1444
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1215 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1266
Query: 72 SSE 74
+++
Sbjct: 1267 TAK 1269
>gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|345517920|ref|ZP_08797381.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|345516260|ref|ZP_08795753.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
gi|212662488|gb|EEB23062.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides dorei DSM 17855]
Length = 1444
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1215 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1266
Query: 72 SSE 74
+++
Sbjct: 1267 TAK 1269
>gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1467
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG +G ++VH+ D+++TD MP M G E++++I+ + F IP +I+
Sbjct: 1238 MANDGVEGL-------KKVHLYHPDMVVTDQMMPNMDGIEMLQRIR-KDFQISHIPVIIL 1289
Query: 72 SSE 74
+++
Sbjct: 1290 TAK 1292
>gi|124006573|ref|ZP_01691405.1| response regulator/phosphatase [Microscilla marina ATCC 23134]
gi|123987728|gb|EAY27419.1| response regulator/phosphatase [Microscilla marina ATCC 23134]
Length = 327
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLIITD+ MP M G ELI+++K Q T +IP +II+ N
Sbjct: 94 DLIITDWDMPLMNGIELIRQLKTQPST-ADIPVIIITGVN 132
>gi|374095508|sp|Q9LYP5.3|ARR21_ARATH RecName: Full=Putative two-component response regulator ARR21
Length = 613
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MPGM G +L K+I + F +P +++SS+
Sbjct: 62 IDLIITDYYMPGMNGLQLKKQITQE---FGNLPVLVMSSD 98
>gi|359455411|ref|ZP_09244639.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20495]
gi|414072947|ref|ZP_11408850.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. Bsw20308]
gi|358047535|dbj|GAA80888.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20495]
gi|410804625|gb|EKS10687.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. Bsw20308]
Length = 265
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E+++ + DLI+TDY MP M G EL + ++ S T+ IP +++SSE
Sbjct: 184 EQLNTQSFDLIVTDYNMPEMDGKELTETVR-GSNTYSHIPILMVSSE 229
>gi|219849926|ref|YP_002464359.1| response regulator receiver protein [Chloroflexus aggregans DSM
9485]
gi|219544185|gb|ACL25923.1| response regulator receiver protein [Chloroflexus aggregans DSM
9485]
Length = 128
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 7 VLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
++L RLM D + G+D+ ++ ++ + V L+ITDY MPGM G +L +K
Sbjct: 22 IILHRLMRDLTGGYDIITVNSGADALAQIALRRVPLVITDYNMPGMNGLQLAAAVK 77
>gi|109947708|ref|YP_664936.1| CheY response regulator [Helicobacter acinonychis str. Sheeba]
gi|109714929|emb|CAJ99937.1| CheY response regulator [Helicobacter acinonychis str. Sheeba]
Length = 124
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ITD+ MP M G +L+KK++ S F+EIP ++I++E
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRADS-RFKEIPIIMITTE 85
>gi|15240724|ref|NP_196338.1| putative two-component response regulator ARR21 [Arabidopsis
thaliana]
gi|7546699|emb|CAB87277.1| putative protein [Arabidopsis thaliana]
gi|332003739|gb|AED91122.1| putative two-component response regulator ARR21 [Arabidopsis
thaliana]
Length = 621
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MPGM G +L K+I + F +P +++SS+
Sbjct: 70 IDLIITDYYMPGMNGLQLKKQITQE---FGNLPVLVMSSD 106
>gi|298482158|ref|ZP_07000346.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298271715|gb|EFI13288.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1428
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K++ F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKIE-FATSHIPIILLTA 1255
>gi|290790028|pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITAEGGKAEV 96
>gi|392382894|ref|YP_005032091.1| putative histidine kinase [Azospirillum brasilense Sp245]
gi|356877859|emb|CCC98715.1| putative histidine kinase [Azospirillum brasilense Sp245]
Length = 1024
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 11 RLM--SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
R+M S G D D + E VDL++TDY MPGMTG EL+++++
Sbjct: 930 RIMEASSGPDALDAFAREPE------VDLVLTDYAMPGMTGLELVRELR 972
>gi|253700458|ref|YP_003021647.1| chemotaxis protein CheA [Geobacter sp. M21]
gi|251775308|gb|ACT17889.1| CheA signal transduction histidine kinase [Geobacter sp. M21]
Length = 679
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLII+D MPG+ G EL + ++ +S +REIP +I+SS
Sbjct: 605 DLIISDVEMPGINGFELTRTLR-ESERYREIPIIIVSS 641
>gi|148658130|ref|YP_001278335.1| response regulator receiver protein [Roseiflexus sp. RS-1]
gi|148570240|gb|ABQ92385.1| response regulator receiver protein [Roseiflexus sp. RS-1]
Length = 127
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 7 VLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
++L RLM D + G+D+ + ++ + V L+ITDY MPGM G +L IK
Sbjct: 22 IILHRLMRDLTGGYDIVTVSSGAEALAQIALRPVPLVITDYNMPGMNGLQLTTAIK 77
>gi|423301887|ref|ZP_17279910.1| hypothetical protein HMPREF1057_03051 [Bacteroides finegoldii
CL09T03C10]
gi|408470978|gb|EKJ89510.1| hypothetical protein HMPREF1057_03051 [Bacteroides finegoldii
CL09T03C10]
Length = 1444
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG GF+ + T DLII D MPGMTG EL KK+K F IP +++
Sbjct: 1198 VAADGISGFEKATT-------YDADLIICDVLMPGMTGFELTKKLK-TDFATSHIPIILL 1249
Query: 72 SSEN 75
++ N
Sbjct: 1250 TALN 1253
>gi|315123128|ref|YP_004065134.1| response regulator receiver domain-containing protein
[Pseudoalteromonas sp. SM9913]
gi|315016888|gb|ADT70225.1| response regulator receiver domain-containing protein
[Pseudoalteromonas sp. SM9913]
Length = 265
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+TDY MP M G EL + ++ QS + IP +++SSE
Sbjct: 192 DLIVTDYNMPEMDGKELTETVR-QSNAYSHIPILMVSSE 229
>gi|334117194|ref|ZP_08491286.1| adenylate/guanylate cyclase with GAF sensor(s) [Microcoleus
vaginatus FGP-2]
gi|333462014|gb|EGK90619.1| adenylate/guanylate cyclase with GAF sensor(s) [Microcoleus
vaginatus FGP-2]
Length = 552
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 2 TTTNGVLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKI 56
T N LL R++ +G+ + P + + A DLI+ D MP + G EL KK+
Sbjct: 21 TPDNLRLLIRILQ--KNGYKVRPVTNGFSALDAIQSSAPDLILLDIMMPDIDGYELCKKL 78
Query: 57 KLQSFTFREIPTVIISS 73
K +S FREIP + +S+
Sbjct: 79 KSES-EFREIPIIFLSA 94
>gi|359436195|ref|ZP_09226314.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20311]
gi|358029184|dbj|GAA62563.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20311]
Length = 265
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+TDY MP M G EL + ++ QS + IP +++SSE
Sbjct: 192 DLIVTDYNMPEMDGKELTETVR-QSNAYSHIPILMVSSE 229
>gi|329963860|ref|ZP_08301202.1| response regulator receiver domain protein [Bacteroides fluxus YIT
12057]
gi|328527113|gb|EGF54119.1| response regulator receiver domain protein [Bacteroides fluxus YIT
12057]
Length = 1342
Score = 40.8 bits (94), Expect = 0.090, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLIITD MPG G EL ++IK T IP VI+S++N
Sbjct: 1126 DLIITDVMMPGTDGIELTRQIKQNKHTM-HIPLVILSAKN 1164
>gi|329928021|ref|ZP_08282025.1| response regulator receiver domain protein [Paenibacillus sp.
HGF5]
gi|328938125|gb|EGG34522.1| response regulator receiver domain protein [Paenibacillus sp.
HGF5]
Length = 329
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
+DL+ITD+ MPGM+G +L ++ Q FT E+P +++++ ++
Sbjct: 43 GIDLVITDWMMPGMSGLQLCMTVR-QQFTLFELPMLMLTARSL 84
>gi|255691095|ref|ZP_05414770.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260623447|gb|EEX46318.1| response regulator receiver domain protein [Bacteroides finegoldii
DSM 17565]
Length = 1444
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG GF+ + T DLII D MPGMTG EL KK+K F IP +++
Sbjct: 1198 VAADGISGFEKATT-------YDADLIICDVLMPGMTGFELTKKLK-TDFATSHIPIILL 1249
Query: 72 SSEN 75
++ N
Sbjct: 1250 TALN 1253
>gi|329908335|ref|ZP_08274848.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Oxalobacteraceae
bacterium IMCC9480]
gi|327546732|gb|EGF31677.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Oxalobacteraceae
bacterium IMCC9480]
Length = 152
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS- 73
DG+ L + + H + +D +ITD+ MP M G EL+K+I+L +P +++++
Sbjct: 54 DGAAALRL--LQSAQTHGVPIDFVITDWNMPVMDGLELLKRIRLDP-ALNHLPVLMVTAE 110
Query: 74 ---ENILA 78
ENI+A
Sbjct: 111 SKKENIIA 118
>gi|207108690|ref|ZP_03242852.1| chemotaxis protein [Helicobacter pylori HPKX_438_CA4C1]
Length = 87
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ITD+ MP M G +L+KK++ S F+EIP ++I++E
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTE 85
>gi|219847087|ref|YP_002461520.1| response regulator receiver protein [Chloroflexus aggregans DSM
9485]
gi|219541346|gb|ACL23084.1| response regulator receiver protein [Chloroflexus aggregans DSM
9485]
Length = 115
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+G+DG L+ DLIITDY MP M G +LI ++ + + IP V+IS
Sbjct: 32 SNGADGLKLARRHW-------YDLIITDYHMPKMDGIDLIYNLRQEGYA---IPMVLISG 81
Query: 74 ENI 76
+ I
Sbjct: 82 DPI 84
>gi|359447511|ref|ZP_09237105.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20439]
gi|358038609|dbj|GAA73354.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20439]
Length = 265
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+TDY MP M G EL + ++ QS + IP +++SSE
Sbjct: 192 DLIVTDYNMPEMDGKELTETVR-QSNAYSHIPILMVSSE 229
>gi|121997279|ref|YP_001002066.1| response regulator receiver protein [Halorhodospira halophila
SL1]
gi|121588684|gb|ABM61264.1| response regulator receiver protein [Halorhodospira halophila
SL1]
Length = 133
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+ +ITD+ MPGMTG EL+K ++ +++PT+++++E
Sbjct: 51 GIQFLITDWNMPGMTGLELLKHVRADP-NLKDLPTLMVTAE 90
>gi|15645681|ref|NP_207858.1| chemotaxis protein (cheY) [Helicobacter pylori 26695]
gi|108562805|ref|YP_627121.1| chemotaxis protein [Helicobacter pylori HPAG1]
gi|208434327|ref|YP_002265993.1| chemotaxis protein [Helicobacter pylori G27]
gi|254779070|ref|YP_003057175.1| Chemotactic response regulator, two-component system
[Helicobacter pylori B38]
gi|298736679|ref|YP_003729207.1| chemotaxis family two-component system response regulator CheY
[Helicobacter pylori B8]
gi|308182549|ref|YP_003926676.1| Chemotactic response regulator, two-component system
[Helicobacter pylori PeCan4]
gi|308184182|ref|YP_003928315.1| Chemotactic response regulator, two-component system
[Helicobacter pylori SJM180]
gi|385218665|ref|YP_005780140.1| Chemotactic response regulator, two-component system
[Helicobacter pylori Gambia94/24]
gi|385220219|ref|YP_005781691.1| Chemotactic response regulator, two-component system
[Helicobacter pylori India7]
gi|385226636|ref|YP_005786560.1| Chemotactic response regulator, two-component system
[Helicobacter pylori SNT49]
gi|386745884|ref|YP_006219101.1| Chemotactic response regulator, two-component system
[Helicobacter pylori HUP-B14]
gi|410024295|ref|YP_006893548.1| Chemotactic response regulator, two-component system
[Helicobacter pylori Rif1]
gi|410502061|ref|YP_006936588.1| Chemotactic response regulator, two-component system
[Helicobacter pylori Rif2]
gi|410682581|ref|YP_006934983.1| Chemotactic response regulator, two-component system
[Helicobacter pylori 26695]
gi|419416650|ref|ZP_13957182.1| Chemotactic response regulator, two-component system
[Helicobacter pylori P79]
gi|444374577|ref|ZP_21173882.1| Chemotactic response regulator, two-component system
[Helicobacter pylori A45]
gi|2500738|sp|P71403.2|CHEY_HELPY RecName: Full=Chemotaxis protein CheY homolog
gi|2314217|gb|AAD08113.1| chemotaxis protein (cheY) [Helicobacter pylori 26695]
gi|4103138|gb|AAD01682.1| CheY [Helicobacter pylori NCTC 11637 = CCUG 17874]
gi|107836578|gb|ABF84447.1| chemotaxis protein [Helicobacter pylori HPAG1]
gi|208432256|gb|ACI27127.1| chemotaxis protein [Helicobacter pylori G27]
gi|254000981|emb|CAX28925.1| Chemotactic response regulator, two-component system
[Helicobacter pylori B38]
gi|281429784|gb|ADA70031.1| CheY [Helicobacter pylori SS1]
gi|298355871|emb|CBI66743.1| two-component system, chemotaxis family, response regulator CheY
[Helicobacter pylori B8]
gi|308060102|gb|ADO01998.1| Chemotactic response regulator, two-component system
[Helicobacter pylori SJM180]
gi|308064734|gb|ADO06626.1| Chemotactic response regulator, two-component system
[Helicobacter pylori PeCan4]
gi|317009026|gb|ADU79606.1| Chemotactic response regulator, two-component system
[Helicobacter pylori India7]
gi|317013823|gb|ADU81259.1| Chemotactic response regulator, two-component system
[Helicobacter pylori Gambia94/24]
gi|344331549|gb|AEN16579.1| Chemotactic response regulator, two-component system
[Helicobacter pylori SNT49]
gi|384374833|gb|EIE30192.1| Chemotactic response regulator, two-component system
[Helicobacter pylori P79]
gi|384552133|gb|AFI07081.1| Chemotactic response regulator, two-component system
[Helicobacter pylori HUP-B14]
gi|409894222|gb|AFV42280.1| Chemotactic response regulator, two-component system
[Helicobacter pylori 26695]
gi|409895952|gb|AFV43874.1| Chemotactic response regulator, two-component system
[Helicobacter pylori Rif1]
gi|409897612|gb|AFV45466.1| Chemotactic response regulator, two-component system
[Helicobacter pylori Rif2]
gi|443620880|gb|ELT81321.1| Chemotactic response regulator, two-component system
[Helicobacter pylori A45]
Length = 124
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 91
>gi|254411357|ref|ZP_05025134.1| hypothetical protein MC7420_1848 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181858|gb|EDX76845.1| hypothetical protein MC7420_1848 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 114
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+IITD MPGM+G EL +K+K T IP +I SS+N IDR
Sbjct: 41 DVIITDVVMPGMSGFELCRKLKGHPATA-NIPIIICSSKN--QEIDR 84
>gi|207092642|ref|ZP_03240429.1| chemotaxis protein [Helicobacter pylori HPKX_438_AG0C1]
gi|419418750|ref|ZP_13959053.1| Chemotactic response regulator, two-component system
[Helicobacter pylori NCTC 11637 = CCUG 17874]
gi|2199516|gb|AAB66375.1| chemotaxis response regulator [Helicobacter pylori]
gi|384373639|gb|EIE29109.1| Chemotactic response regulator, two-component system
[Helicobacter pylori NCTC 11637 = CCUG 17874]
Length = 124
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 91
>gi|253996190|ref|YP_003048254.1| response regulator receiver protein [Methylotenera mobilis JLW8]
gi|253982869|gb|ACT47727.1| response regulator receiver protein [Methylotenera mobilis JLW8]
Length = 122
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG + + T VDL++TD+ MP M G LIK+++ Q +++ +P +++++E
Sbjct: 34 DGQDGLEKAKEKT-------VDLVLTDHNMPVMDGLSLIKRLR-QLGSYQSVPILMLTTE 85
Query: 75 N 75
+
Sbjct: 86 S 86
>gi|220903605|ref|YP_002478917.1| response regulator receiver protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867904|gb|ACL48239.1| response regulator receiver protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 126
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D I++D+ MP MTG EL++K++ S F IP +++++E
Sbjct: 52 IDFIVSDWNMPNMTGIELLRKVRA-SEQFAHIPFLMVTAE 90
>gi|427385687|ref|ZP_18881994.1| hypothetical protein HMPREF9447_03027 [Bacteroides oleiciplenus YIT
12058]
gi|425726726|gb|EKU89589.1| hypothetical protein HMPREF9447_03027 [Bacteroides oleiciplenus YIT
12058]
Length = 1429
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG+ GF E+ DLII D MPGMTG E+ +++K F IP +++++
Sbjct: 1202 DGTKGF-------EKARTYDADLIICDVMMPGMTGFEVTRRLK-SDFATSHIPIILLTA 1252
>gi|427403099|ref|ZP_18894096.1| hypothetical protein HMPREF9710_03692 [Massilia timonae CCUG 45783]
gi|425718110|gb|EKU81062.1| hypothetical protein HMPREF9710_03692 [Massilia timonae CCUG 45783]
Length = 584
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
DL+ITDY MPGMTG EL+++ + F +PT+I +
Sbjct: 494 DLLITDYLMPGMTGAELVQRTRAM---FPGLPTIIAT 527
>gi|290790025|pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
gi|290790026|pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 96
>gi|86150349|ref|ZP_01068575.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86152904|ref|ZP_01071109.1| chemotaxis protein cheY [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|148927046|ref|ZP_01810716.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205355863|ref|ZP_03222632.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|317510608|ref|ZP_07968008.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni 305]
gi|415734027|ref|ZP_11474456.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|1848242|gb|AAC44858.1| chemotaxis protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|85839174|gb|EAQ56437.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85843789|gb|EAQ60999.1| chemotaxis protein cheY [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|145844971|gb|EDK22074.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205346297|gb|EDZ32931.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|315926538|gb|EFV05919.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315929881|gb|EFV09041.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni 305]
Length = 119
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 9 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 61
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 62 KYEDMPIIMVTTEGGKAEV 80
>gi|57238000|ref|YP_179249.1| chemotaxis protein CheY [Campylobacter jejuni RM1221]
gi|121613202|ref|YP_001000796.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
81-176]
gi|153952086|ref|YP_001397770.1| chemotaxis protein CheY [Campylobacter jejuni subsp. doylei
269.97]
gi|157415379|ref|YP_001482635.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
81116]
gi|167005711|ref|ZP_02271469.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|218562732|ref|YP_002344511.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|384441737|ref|YP_005658040.1| Chemotaxis protein cheY [Campylobacter jejuni subsp. jejuni M1]
gi|384448365|ref|YP_005656416.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
IA3902]
gi|403055855|ref|YP_006633260.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|407942503|ref|YP_006858145.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni PT14]
gi|415745483|ref|ZP_11474939.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni 327]
gi|419617994|ref|ZP_14151554.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
129-258]
gi|419620813|ref|ZP_14154223.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
51494]
gi|419623349|ref|ZP_14156480.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|419624957|ref|ZP_14157983.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|419628488|ref|ZP_14161340.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|419629574|ref|ZP_14162295.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
60004]
gi|419631603|ref|ZP_14164183.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|419633774|ref|ZP_14166200.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|419635095|ref|ZP_14167414.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
55037]
gi|419637675|ref|ZP_14169833.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|419638394|ref|ZP_14170457.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
86605]
gi|419640725|ref|ZP_14172648.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23357]
gi|419643111|ref|ZP_14174875.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
ATCC 33560]
gi|419643984|ref|ZP_14175576.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|419646367|ref|ZP_14177835.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
53161]
gi|419649140|ref|ZP_14180440.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|419650519|ref|ZP_14181737.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419651379|ref|ZP_14182478.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-894]
gi|419654513|ref|ZP_14185442.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419656172|ref|ZP_14186993.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419658212|ref|ZP_14188849.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-1]
gi|419660922|ref|ZP_14191309.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419662567|ref|ZP_14192849.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-831]
gi|419664255|ref|ZP_14194420.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419664861|ref|ZP_14194940.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419666477|ref|ZP_14196478.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-10]
gi|419669963|ref|ZP_14199720.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-11]
gi|419672027|ref|ZP_14201646.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419674268|ref|ZP_14203665.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
51037]
gi|419674842|ref|ZP_14204125.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
110-21]
gi|419677063|ref|ZP_14206224.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
87330]
gi|419678944|ref|ZP_14207975.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
87459]
gi|419681985|ref|ZP_14210784.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
140-16]
gi|419682657|ref|ZP_14211386.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1213]
gi|419684017|ref|ZP_14212630.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1577]
gi|419687254|ref|ZP_14215661.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1798]
gi|419688528|ref|ZP_14216850.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1854]
gi|419690172|ref|ZP_14218385.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1893]
gi|419691843|ref|ZP_14219952.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1928]
gi|419693634|ref|ZP_14221618.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9872]
gi|419696124|ref|ZP_14223997.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|419697796|ref|ZP_14225524.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23211]
gi|424845936|ref|ZP_18270537.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
NW]
gi|424850307|ref|ZP_18274720.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
D2600]
gi|143955301|sp|A1W0A5.1|CHEY_CAMJJ RecName: Full=Chemotaxis protein CheY homolog
gi|166201766|sp|A8FMH1.1|CHEY_CAMJ8 RecName: Full=Chemotaxis protein CheY homolog
gi|166201767|sp|P0C635.1|CHEY_CAMJE RecName: Full=Chemotaxis protein CheY homolog
gi|1644429|gb|AAB17571.1| response regulator protein [Campylobacter jejuni]
gi|3413457|emb|CAA72347.1| cheY [Campylobacter jejuni]
gi|57166804|gb|AAW35583.1| chemotaxis protein CheY [Campylobacter jejuni RM1221]
gi|87249184|gb|EAQ72145.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
81-176]
gi|112360438|emb|CAL35235.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|152939532|gb|ABS44273.1| chemotaxis protein CheY [Campylobacter jejuni subsp. doylei
269.97]
gi|157386343|gb|ABV52658.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
81116]
gi|284926346|gb|ADC28698.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
IA3902]
gi|307748020|gb|ADN91290.1| Chemotaxis protein cheY [Campylobacter jejuni subsp. jejuni M1]
gi|315932258|gb|EFV11201.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni 327]
gi|356486619|gb|EHI16602.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
NW]
gi|356486989|gb|EHI16962.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
D2600]
gi|380595993|gb|EIB16709.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
129-258]
gi|380598428|gb|EIB18837.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
51494]
gi|380601527|gb|EIB21838.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|380604197|gb|EIB24231.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|380605647|gb|EIB25613.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|380607759|gb|EIB27609.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
60004]
gi|380610338|gb|EIB29937.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|380611075|gb|EIB30635.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|380613514|gb|EIB32990.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
55037]
gi|380614991|gb|EIB34287.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|380618873|gb|EIB37983.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
86605]
gi|380619126|gb|EIB38221.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23357]
gi|380622995|gb|EIB41724.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|380623115|gb|EIB41836.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
ATCC 33560]
gi|380623724|gb|EIB42414.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
53161]
gi|380625428|gb|EIB44015.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|380628394|gb|EIB46710.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380630704|gb|EIB48926.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380631360|gb|EIB49560.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380633806|gb|EIB51736.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380634513|gb|EIB52390.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380635734|gb|EIB53503.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380637895|gb|EIB55497.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380641339|gb|EIB58700.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380644541|gb|EIB61723.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380645804|gb|EIB62815.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-11]
gi|380647745|gb|EIB64642.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380648422|gb|EIB65272.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380650941|gb|EIB67540.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
51037]
gi|380652600|gb|EIB69073.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
110-21]
gi|380655185|gb|EIB71508.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
87330]
gi|380656790|gb|EIB72930.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
140-16]
gi|380658897|gb|EIB74891.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
87459]
gi|380661240|gb|EIB77147.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1213]
gi|380662801|gb|EIB78490.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1798]
gi|380665359|gb|EIB80931.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1854]
gi|380667629|gb|EIB83053.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1577]
gi|380669438|gb|EIB84723.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1893]
gi|380671494|gb|EIB86705.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1928]
gi|380672255|gb|EIB87428.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 9872]
gi|380675522|gb|EIB90422.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|380677194|gb|EIB92066.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23211]
gi|401781507|emb|CCK67212.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|407906341|gb|AFU43170.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni PT14]
Length = 130
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 20 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 72
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 73 KYEDMPIIMVTTEGGKAEV 91
>gi|1653994|emb|CAA57487.1| cheY [Helicobacter pylori NCTC 11637 = CCUG 17874]
Length = 140
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ITD+ MP M G +L+KK++ S F+EIP ++I++E
Sbjct: 65 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTE 101
>gi|409196543|ref|ZP_11225206.1| two-component system sensor histidine kinase/response regulator
[Marinilabilia salmonicolor JCM 21150]
Length = 1324
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
S+G + L T+T E LIITD MPGMTG EL K+IK +T
Sbjct: 1100 SNGLEALKLIDTETPE-------LIITDIIMPGMTGLELTKQIKAGKYT 1141
>gi|237751140|ref|ZP_04581620.1| chemotaxis regulatory protein CheY [Helicobacter bilis ATCC
43879]
gi|229373585|gb|EEO23976.1| chemotaxis regulatory protein CheY [Helicobacter bilis ATCC
43879]
Length = 124
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++++ITD+ MP M G EL+KK++ + +++IP +++++E
Sbjct: 46 GINVLITDWNMPEMNGLELVKKVRAEE-KYKDIPIIMVTTE 85
>gi|86151116|ref|ZP_01069332.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
260.94]
gi|315124595|ref|YP_004066599.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|384443472|ref|YP_005659724.1| Chemotaxis regulator CheY [Campylobacter jejuni subsp. jejuni S3]
gi|85842286|gb|EAQ59532.1| chemotaxis protein CheY [Campylobacter jejuni subsp. jejuni
260.94]
gi|315018317|gb|ADT66410.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315058559|gb|ADT72888.1| Chemotaxis regulator CheY [Campylobacter jejuni subsp. jejuni S3]
Length = 128
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 18 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 70
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 71 KYEDMPIIMVTTEGGKAEV 89
>gi|423315308|ref|ZP_17293238.1| hypothetical protein HMPREF1058_03850 [Bacteroides vulgatus
CL09T03C04]
gi|423315340|ref|ZP_17293270.1| hypothetical protein HMPREF1058_03882 [Bacteroides vulgatus
CL09T03C04]
gi|392679545|gb|EIY72926.1| hypothetical protein HMPREF1058_03850 [Bacteroides vulgatus
CL09T03C04]
gi|392679577|gb|EIY72958.1| hypothetical protein HMPREF1058_03882 [Bacteroides vulgatus
CL09T03C04]
Length = 1428
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1200 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1248
>gi|319643185|ref|ZP_07997813.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|317385089|gb|EFV66040.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1432
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1204 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1252
>gi|294776427|ref|ZP_06741905.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|294449753|gb|EFG18275.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
Length = 1432
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1204 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1252
>gi|345520525|ref|ZP_08799912.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254835045|gb|EET15354.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
Length = 1428
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1200 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1248
>gi|150002755|ref|YP_001297499.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931179|gb|ABR37877.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1426
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1198 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1246
>gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|383122619|ref|ZP_09943311.1| hypothetical protein BSIG_0635 [Bacteroides sp. 1_1_6]
gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides
thetaiotaomicron VPI-5482]
gi|251842282|gb|EES70362.1| hypothetical protein BSIG_0635 [Bacteroides sp. 1_1_6]
Length = 1472
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1251 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1297
>gi|423299863|ref|ZP_17277888.1| hypothetical protein HMPREF1057_01029 [Bacteroides finegoldii
CL09T03C10]
gi|408473672|gb|EKJ92194.1| hypothetical protein HMPREF1057_01029 [Bacteroides finegoldii
CL09T03C10]
Length = 1463
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1240 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1286
>gi|423213461|ref|ZP_17199990.1| hypothetical protein HMPREF1074_01522 [Bacteroides xylanisolvens
CL03T12C04]
gi|392693921|gb|EIY87151.1| hypothetical protein HMPREF1074_01522 [Bacteroides xylanisolvens
CL03T12C04]
Length = 1461
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1238 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1284
>gi|423286787|ref|ZP_17265638.1| hypothetical protein HMPREF1069_00681 [Bacteroides ovatus CL02T12C04]
gi|392674325|gb|EIY67773.1| hypothetical protein HMPREF1069_00681 [Bacteroides ovatus CL02T12C04]
Length = 1464
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1241 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1287
>gi|423296571|ref|ZP_17274656.1| hypothetical protein HMPREF1070_03321 [Bacteroides ovatus CL03T12C18]
gi|392670294|gb|EIY63779.1| hypothetical protein HMPREF1070_03321 [Bacteroides ovatus CL03T12C18]
Length = 1465
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1242 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1288
>gi|380695318|ref|ZP_09860177.1| two-component system sensor histidine kinase/response regulator
[Bacteroides faecis MAJ27]
Length = 1448
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1227 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1273
>gi|336416175|ref|ZP_08596512.1| hypothetical protein HMPREF1017_03620 [Bacteroides ovatus 3_8_47FAA]
gi|335939352|gb|EGN01228.1| hypothetical protein HMPREF1017_03620 [Bacteroides ovatus 3_8_47FAA]
Length = 1464
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1241 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1287
>gi|336402287|ref|ZP_08583026.1| hypothetical protein HMPREF0127_00339 [Bacteroides sp. 1_1_30]
gi|335937357|gb|EGM99260.1| hypothetical protein HMPREF0127_00339 [Bacteroides sp. 1_1_30]
Length = 1464
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1241 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1287
>gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. 3_1_23]
gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. 3_1_23]
Length = 1476
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1253 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1299
>gi|383113094|ref|ZP_09933870.1| hypothetical protein BSGG_0064 [Bacteroides sp. D2]
gi|382948863|gb|EFS29364.2| hypothetical protein BSGG_0064 [Bacteroides sp. D2]
Length = 1464
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1241 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1287
>gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
Length = 1461
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1238 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1284
>gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. D22]
gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. D22]
Length = 1476
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1253 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1299
>gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
Length = 1476
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1253 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1299
>gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1465
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1242 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1288
>gi|345511473|ref|ZP_08791013.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1464
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1241 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1287
>gi|225872618|ref|YP_002754073.1| response regulator [Acidobacterium capsulatum ATCC 51196]
gi|225792853|gb|ACO32943.1| response regulator [Acidobacterium capsulatum ATCC 51196]
Length = 128
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VDLI+TD MP M G ELI +++ R IP +++S++ R++R
Sbjct: 50 VDLILTDINMPEMNGEELIARLEADDL-LRSIPVIVVSTDATQGRVER 96
>gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
14838]
gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
14838]
Length = 1474
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1251 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1297
>gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
gi|156111849|gb|EDO13594.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus ATCC 8483]
Length = 1464
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1241 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1287
>gi|283956516|ref|ZP_06373996.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792236|gb|EFC31025.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 128
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 18 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 70
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 71 KYEDMPIIMVTTEGGKAEV 89
>gi|265752273|ref|ZP_06088066.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263237065|gb|EEZ22535.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1428
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1200 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1248
>gi|212690922|ref|ZP_03299050.1| hypothetical protein BACDOR_00410 [Bacteroides dorei DSM 17855]
gi|212666154|gb|EEB26726.1| response regulator receiver domain protein [Bacteroides dorei DSM
17855]
Length = 1432
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1204 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1252
>gi|345512502|ref|ZP_08792028.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|423229041|ref|ZP_17215446.1| hypothetical protein HMPREF1063_01266 [Bacteroides dorei CL02T00C15]
gi|423239880|ref|ZP_17220995.1| hypothetical protein HMPREF1065_01618 [Bacteroides dorei CL03T12C01]
gi|423244881|ref|ZP_17225955.1| hypothetical protein HMPREF1064_02161 [Bacteroides dorei CL02T12C06]
gi|345456373|gb|EEO45507.2| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|392634794|gb|EIY28706.1| hypothetical protein HMPREF1063_01266 [Bacteroides dorei CL02T00C15]
gi|392640922|gb|EIY34713.1| hypothetical protein HMPREF1064_02161 [Bacteroides dorei CL02T12C06]
gi|392644869|gb|EIY38603.1| hypothetical protein HMPREF1065_01618 [Bacteroides dorei CL03T12C01]
Length = 1432
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1204 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1252
>gi|237712594|ref|ZP_04543075.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229453915|gb|EEO59636.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1431
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P+ E DLII D MPGMTG E+ +K+K F IP +++++
Sbjct: 1203 PSGLERARTYDADLIICDVLMPGMTGFEVTRKLK-NDFDTSHIPIILLTA 1251
>gi|255283555|ref|ZP_05348110.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
14469]
gi|255265817|gb|EET59022.1| response regulator receiver domain protein [Marvinbryantia
formatexigens DSM 14469]
Length = 226
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L SDG + ++ E HV DL++TD MPGM G ELIK+I+ F ++P +I+
Sbjct: 29 LASDGMEALEI----LESRHV---DLLLTDVMMPGMDGFELIKEIRRNGF---KLPALIL 78
Query: 72 SSEN 75
+++
Sbjct: 79 TAKQ 82
>gi|156743607|ref|YP_001433736.1| response regulator receiver protein [Roseiflexus castenholzii DSM
13941]
gi|156234935|gb|ABU59718.1| response regulator receiver protein [Roseiflexus castenholzii DSM
13941]
Length = 127
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 7 VLLSRLMSDGSDGFDL-----SPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
++L RLM D + G+D+ ++ + V L+ITDY MPGM G +L IK
Sbjct: 22 IILHRLMRDLTGGYDIVTVSGGAEALAQIALRPVPLVITDYNMPGMNGLQLTAAIK 77
>gi|189464026|ref|ZP_03012811.1| hypothetical protein BACINT_00361 [Bacteroides intestinalis DSM
17393]
gi|189438599|gb|EDV07584.1| response regulator receiver domain protein [Bacteroides intestinalis
DSM 17393]
Length = 1428
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG+ GF E+ DLII D MPGM+G E+ K++K F IP +++++
Sbjct: 1201 DGTSGF-------EKARTYDADLIICDVLMPGMSGFEVTKRLK-SDFATSHIPIILLTA 1251
>gi|386287574|ref|ZP_10064746.1| two-component response regulator CheY [gamma proteobacterium
BDW918]
gi|385279396|gb|EIF43336.1| two-component response regulator CheY [gamma proteobacterium
BDW918]
Length = 124
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 6 GVLLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFRE 65
G L R +S+ DG P +H D +ITD MP M+G EL++ I+ R
Sbjct: 21 GDLGYRYISEADDGLAALPM----LHNQHFDFVITDLLMPHMSGLELLRAIRADR-RLRH 75
Query: 66 IPTVIISSE 74
IP ++I+++
Sbjct: 76 IPVLMITAD 84
>gi|419621584|ref|ZP_14154835.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23216]
gi|380601593|gb|EIB21903.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
LMG 23216]
Length = 130
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 20 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 72
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 73 KYEDMPIIMVTTEGGKAEV 91
>gi|374298504|ref|YP_005050143.1| response regulator receiver protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332551440|gb|EGJ48484.1| response regulator receiver protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 126
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D I+ D+ MP MTG EL++K++ QS ++ +P +++++E
Sbjct: 52 IDFIVADWNMPKMTGIELLRKVR-QSKDYQNMPFLMVTAE 90
>gi|347540435|ref|YP_004847860.1| response regulator receiver protein [Pseudogulbenkiania sp. NH8B]
gi|345643613|dbj|BAK77446.1| response regulator receiver protein [Pseudogulbenkiania sp. NH8B]
Length = 266
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+++ DG + P ++ DL++TDY MP M G +L++ I+ QS F +P +++S
Sbjct: 171 IAEAEDGSEAVPL----INATHFDLVVTDYNMPHMDGKQLVEYIRTQSMQF-TVPILMVS 225
Query: 73 SENILARI 80
SE R+
Sbjct: 226 SETDQRRL 233
>gi|217031607|ref|ZP_03437112.1| hypothetical protein HPB128_21g165 [Helicobacter pylori B128]
gi|420408381|ref|ZP_14907540.1| response regulator [Helicobacter pylori NQ4216]
gi|420415449|ref|ZP_14914563.1| response regulator [Helicobacter pylori NQ4053]
gi|420416596|ref|ZP_14915705.1| response regulator [Helicobacter pylori NQ4044]
gi|420418332|ref|ZP_14917424.1| response regulator [Helicobacter pylori NQ4076]
gi|420421775|ref|ZP_14920853.1| response regulator [Helicobacter pylori NQ4110]
gi|420427068|ref|ZP_14926113.1| response regulator [Helicobacter pylori Hp A-9]
gi|420431958|ref|ZP_14930977.1| response regulator [Helicobacter pylori Hp H-16]
gi|420435707|ref|ZP_14934706.1| response regulator [Helicobacter pylori Hp H-27]
gi|420437391|ref|ZP_14936375.1| response regulator [Helicobacter pylori Hp H-28]
gi|420440069|ref|ZP_14939029.1| response regulator [Helicobacter pylori Hp H-30]
gi|420447504|ref|ZP_14946396.1| response regulator [Helicobacter pylori Hp H-43]
gi|420453218|ref|ZP_14952057.1| response regulator [Helicobacter pylori Hp A-8]
gi|420458258|ref|ZP_14957068.1| response regulator [Helicobacter pylori Hp A-26]
gi|420461675|ref|ZP_14960465.1| response regulator [Helicobacter pylori Hp H-3]
gi|420466703|ref|ZP_14965460.1| response regulator [Helicobacter pylori Hp H-9]
gi|420470942|ref|ZP_14969648.1| response regulator [Helicobacter pylori Hp H-11]
gi|420483660|ref|ZP_14982290.1| hypothetical protein HPHPP3_0490 [Helicobacter pylori Hp P-3]
gi|420490414|ref|ZP_14989000.1| response regulator [Helicobacter pylori Hp P-13]
gi|420492448|ref|ZP_14991022.1| response regulator [Helicobacter pylori Hp P-15]
gi|420493737|ref|ZP_14992308.1| response regulator [Helicobacter pylori Hp P-16]
gi|420495718|ref|ZP_14994282.1| response regulator [Helicobacter pylori Hp P-23]
gi|420497327|ref|ZP_14995887.1| hypothetical protein HPHPP25_0700 [Helicobacter pylori Hp P-25]
gi|420501217|ref|ZP_14999761.1| response regulator [Helicobacter pylori Hp P-30]
gi|420514018|ref|ZP_15012491.1| hypothetical protein HPHPP3B_0396 [Helicobacter pylori Hp P-3b]
gi|420519175|ref|ZP_15017619.1| hypothetical protein HPHPH5B_0485 [Helicobacter pylori Hp H-5b]
gi|420524242|ref|ZP_15022652.1| hypothetical protein HPHPP13B_0494 [Helicobacter pylori Hp P-13b]
gi|420526470|ref|ZP_15024871.1| hypothetical protein HPHPP15B_1030 [Helicobacter pylori Hp P-15b]
gi|420527659|ref|ZP_15026053.1| hypothetical protein HPHPP25C_0525 [Helicobacter pylori Hp P-25c]
gi|420530359|ref|ZP_15028743.1| hypothetical protein HPHPP25D_1563 [Helicobacter pylori Hp P-25d]
gi|421709779|ref|ZP_16149138.1| hypothetical protein OUC_0570 [Helicobacter pylori R018c]
gi|421713283|ref|ZP_16152614.1| hypothetical protein OUG_0746 [Helicobacter pylori R32b]
gi|421714543|ref|ZP_16153864.1| hypothetical protein OUI_0380 [Helicobacter pylori R036d]
gi|421716440|ref|ZP_16155751.1| hypothetical protein OUK_0618 [Helicobacter pylori R037c]
gi|421717943|ref|ZP_16157244.1| hypothetical protein OUM_0469 [Helicobacter pylori R038b]
gi|421721416|ref|ZP_16160691.1| hypothetical protein OUQ_0687 [Helicobacter pylori R055a]
gi|421723032|ref|ZP_16162289.1| hypothetical protein OUS_0654 [Helicobacter pylori R056a]
gi|216946807|gb|EEC25403.1| hypothetical protein HPB128_21g165 [Helicobacter pylori B128]
gi|393025866|gb|EJB26972.1| response regulator [Helicobacter pylori NQ4216]
gi|393032290|gb|EJB33358.1| response regulator [Helicobacter pylori NQ4053]
gi|393033158|gb|EJB34221.1| response regulator [Helicobacter pylori NQ4076]
gi|393037025|gb|EJB38063.1| response regulator [Helicobacter pylori NQ4044]
gi|393038293|gb|EJB39327.1| response regulator [Helicobacter pylori NQ4110]
gi|393042001|gb|EJB43012.1| response regulator [Helicobacter pylori Hp A-9]
gi|393049551|gb|EJB50517.1| response regulator [Helicobacter pylori Hp H-16]
gi|393051566|gb|EJB52517.1| response regulator [Helicobacter pylori Hp H-27]
gi|393053705|gb|EJB54649.1| response regulator [Helicobacter pylori Hp H-28]
gi|393058095|gb|EJB58991.1| response regulator [Helicobacter pylori Hp H-30]
gi|393062919|gb|EJB63767.1| response regulator [Helicobacter pylori Hp H-43]
gi|393070826|gb|EJB71615.1| response regulator [Helicobacter pylori Hp A-8]
gi|393075779|gb|EJB76533.1| response regulator [Helicobacter pylori Hp A-26]
gi|393081655|gb|EJB82375.1| response regulator [Helicobacter pylori Hp H-3]
gi|393084656|gb|EJB85345.1| response regulator [Helicobacter pylori Hp H-11]
gi|393085101|gb|EJB85789.1| response regulator [Helicobacter pylori Hp H-9]
gi|393102885|gb|EJC03449.1| hypothetical protein HPHPP3_0490 [Helicobacter pylori Hp P-3]
gi|393106887|gb|EJC07430.1| response regulator [Helicobacter pylori Hp P-15]
gi|393109757|gb|EJC10288.1| response regulator [Helicobacter pylori Hp P-13]
gi|393112029|gb|EJC12550.1| response regulator [Helicobacter pylori Hp P-23]
gi|393112993|gb|EJC13513.1| response regulator [Helicobacter pylori Hp P-16]
gi|393113606|gb|EJC14124.1| hypothetical protein HPHPP25_0700 [Helicobacter pylori Hp P-25]
gi|393128267|gb|EJC28711.1| hypothetical protein HPHPH5B_0485 [Helicobacter pylori Hp H-5b]
gi|393131775|gb|EJC32198.1| hypothetical protein HPHPP15B_1030 [Helicobacter pylori Hp P-15b]
gi|393133401|gb|EJC33818.1| hypothetical protein HPHPP13B_0494 [Helicobacter pylori Hp P-13b]
gi|393134785|gb|EJC35194.1| hypothetical protein HPHPP25C_0525 [Helicobacter pylori Hp P-25c]
gi|393135562|gb|EJC35958.1| hypothetical protein HPHPP25D_1563 [Helicobacter pylori Hp P-25d]
gi|393150023|gb|EJC50331.1| response regulator [Helicobacter pylori Hp P-30]
gi|393158481|gb|EJC58741.1| hypothetical protein HPHPP3B_0396 [Helicobacter pylori Hp P-3b]
gi|407211224|gb|EKE81093.1| hypothetical protein OUC_0570 [Helicobacter pylori R018c]
gi|407216649|gb|EKE86486.1| hypothetical protein OUG_0746 [Helicobacter pylori R32b]
gi|407218228|gb|EKE88057.1| hypothetical protein OUI_0380 [Helicobacter pylori R036d]
gi|407220703|gb|EKE90509.1| hypothetical protein OUK_0618 [Helicobacter pylori R037c]
gi|407222735|gb|EKE92533.1| hypothetical protein OUM_0469 [Helicobacter pylori R038b]
gi|407224751|gb|EKE94526.1| hypothetical protein OUQ_0687 [Helicobacter pylori R055a]
gi|407225400|gb|EKE95171.1| hypothetical protein OUS_0654 [Helicobacter pylori R056a]
Length = 113
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 80
>gi|421720009|ref|ZP_16159293.1| hypothetical protein OUO_0908 [Helicobacter pylori R046Wa]
gi|407221332|gb|EKE91137.1| hypothetical protein OUO_0908 [Helicobacter pylori R046Wa]
Length = 90
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 15 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 57
>gi|420420368|ref|ZP_14919454.1| response regulator [Helicobacter pylori NQ4161]
gi|420506262|ref|ZP_15004777.1| response regulator [Helicobacter pylori Hp P-74]
gi|393036059|gb|EJB37099.1| response regulator [Helicobacter pylori NQ4161]
gi|393115767|gb|EJC16277.1| response regulator [Helicobacter pylori Hp P-74]
Length = 113
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 80
>gi|288925563|ref|ZP_06419496.1| putative response regulator receiver domain protein [Prevotella
buccae D17]
gi|288337779|gb|EFC76132.1| putative response regulator receiver domain protein [Prevotella
buccae D17]
Length = 1363
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 20 FDLSPTDTEEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
FD +P E + L DL+I+D MP M G L+KKIK S +IP ++++S++
Sbjct: 1134 FDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGVTLVKKIKTNS-NISDIPVILLTSKS 1192
>gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260622611|gb|EEX45482.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides finegoldii DSM 17565]
Length = 1476
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1253 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1299
>gi|256831227|ref|YP_003159955.1| response regulator receiver protein [Desulfomicrobium baculatum
DSM 4028]
gi|256580403|gb|ACU91539.1| response regulator receiver protein [Desulfomicrobium baculatum
DSM 4028]
Length = 126
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG+ +++ D VD II+D+ MP MTG EL++K++ S F ++P +++++E
Sbjct: 39 DGTAAWEILTKDQ-------VDFIISDWNMPQMTGIELLRKVR-ASEEFGDLPFLMVTAE 90
>gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 822
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
VDL+I+D MPGM G EL +KI+ S ++++P ++++S
Sbjct: 48 VDLVISDVVMPGMDGYELCEKIRKNS-RYKDVPVILLTS 85
>gi|78356619|ref|YP_388068.1| response regulator receiver protein [Desulfovibrio alaskensis
G20]
gi|78219024|gb|ABB38373.1| response regulator receiver protein [Desulfovibrio alaskensis
G20]
Length = 123
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ DG DG + + E VDLII+D MP M G IK ++ Q T+R++P V++
Sbjct: 31 MAEDGLDGLEKLYSAEE-----TVDLIISDVNMPRMDGFTFIKTVREQD-TYRDLPIVVL 84
Query: 72 SSE 74
S+E
Sbjct: 85 STE 87
>gi|345870300|ref|ZP_08822253.1| response regulator receiver protein [Thiorhodococcus drewsii AZ1]
gi|343921872|gb|EGV32581.1| response regulator receiver protein [Thiorhodococcus drewsii AZ1]
Length = 241
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFR-EIPTVIISS 73
VDL+ITD MP M G ELIK+I+L + R ++P ++++S
Sbjct: 55 VDLLITDIQMPKMNGLELIKQIRLGNSPRRPDMPAIVVTS 94
>gi|325300090|ref|YP_004260007.1| histidine kinase [Bacteroides salanitronis DSM 18170]
gi|324319643|gb|ADY37534.1| histidine kinase [Bacteroides salanitronis DSM 18170]
Length = 1429
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
R +DG+ G E V DLII+D MPG +G EL KK+K F IP ++
Sbjct: 1198 RAEADGNAGL-------ECVKTFDADLIISDVLMPGCSGFELTKKLK-NDFNTSHIPIIL 1249
Query: 71 ISSEN 75
+++ N
Sbjct: 1250 LTALN 1254
>gi|75906284|ref|YP_320580.1| response regulator receiver domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75700009|gb|ABA19685.1| Response regulator receiver domain protein (CheY) [Anabaena
variabilis ATCC 29413]
Length = 125
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 8 LLSRLMSDGSDGFDL-----SPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
L+SR + + G+D+ + E+ + D+I+TD MPGM+G EL + +K T
Sbjct: 21 LMSRYLQES--GYDVIKAAGAKEAIEKALLEKPDVIVTDVVMPGMSGFELCRSLKKHPLT 78
Query: 63 FREIPTVIISSENILARIDR 82
++P VI SS+N IDR
Sbjct: 79 -EKLPIVICSSKN--QEIDR 95
>gi|359412433|ref|ZP_09204898.1| two component transcriptional regulator, winged helix family
[Clostridium sp. DL-VIII]
gi|357171317|gb|EHI99491.1| two component transcriptional regulator, winged helix family
[Clostridium sp. DL-VIII]
Length = 224
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 12/64 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG D F+L +T DLI+ D +PGM G EL+KKIK + IP + ++++
Sbjct: 40 DGLDAFNLLKEET-------FDLILMDIMLPGMDGFELMKKIKDLN-----IPVIFLTAK 87
Query: 75 NILA 78
N LA
Sbjct: 88 NGLA 91
>gi|390167500|ref|ZP_10219487.1| two-component system sensor sporulation kinase C [Sphingobium
indicum B90A]
gi|389589908|gb|EIM67916.1| two-component system sensor sporulation kinase C [Sphingobium
indicum B90A]
Length = 538
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+VDL+ITDY MPGMTG +L +I +++ +P VII+
Sbjct: 455 SVDLVITDYAMPGMTGTQLADEIDMRT---PGLPVVIIT 490
>gi|315606703|ref|ZP_07881713.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315251558|gb|EFU31537.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 1309
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 20 FDLSPTDTEEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
FD +P E + L DL+I+D MP M G L+KKIK S +IP ++++S++
Sbjct: 1080 FDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGVTLVKKIKTNS-NISDIPVILLTSKS 1138
>gi|157738175|ref|YP_001490859.1| chemotaxis protein CheY [Arcobacter butzleri RM4018]
gi|157700029|gb|ABV68189.1| chemotaxis protein CheY [Arcobacter butzleri RM4018]
Length = 123
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+I+TD+ MP M G EL+KK++ + T ++ P ++I++E
Sbjct: 49 DVILTDWNMPNMNGLELVKKVRAEG-THQKTPIIMITTE 86
>gi|294012257|ref|YP_003545717.1| two-component system sensor sporulation kinase C [Sphingobium
japonicum UT26S]
gi|292675587|dbj|BAI97105.1| two-component system sensor sporulation kinase C [Sphingobium
japonicum UT26S]
Length = 523
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+VDL+ITDY MPGMTG +L +I +++ +P VII+
Sbjct: 440 SVDLVITDYAMPGMTGTQLADEIDMRT---PGLPVVIIT 475
>gi|224824950|ref|ZP_03698056.1| response regulator receiver protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602621|gb|EEG08798.1| response regulator receiver protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 266
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+++ DG + P ++ DL++TDY MP M G +L++ I+ QS F +P +++S
Sbjct: 171 IAEAEDGSEAVPL----INATHFDLVVTDYNMPHMDGKQLVEYIRTQSMQF-TVPILMVS 225
Query: 73 SENILARI 80
SE R+
Sbjct: 226 SETDQRRL 233
>gi|395225134|ref|ZP_10403664.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Thiovulum sp. ES]
gi|394446719|gb|EJF07533.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Thiovulum sp. ES]
Length = 557
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 9/58 (15%)
Query: 22 LSPTDTEEV--HVLA----VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+S +D +E H LA +DLI+TD MP M G E+IKK++ ++ +++P +++++
Sbjct: 41 ISASDGDEALQHYLAEEDSIDLILTDQLMPNMNGIEMIKKVRERN---KKVPIILVTA 95
>gi|402307446|ref|ZP_10826469.1| response regulator receiver domain protein [Prevotella sp. MSX73]
gi|400378496|gb|EJP31351.1| response regulator receiver domain protein [Prevotella sp. MSX73]
Length = 1309
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 20 FDLSPTDTEEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
FD +P E + L DL+I+D MP M G L+KKIK S +IP ++++S++
Sbjct: 1080 FDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGVTLVKKIKTNS-NISDIPVILLTSKS 1138
>gi|333383406|ref|ZP_08475067.1| hypothetical protein HMPREF9455_03233 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827855|gb|EGK00590.1| hypothetical protein HMPREF9455_03233 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1384
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
LIITD MPGM G E I +K FT + IP VI+S++
Sbjct: 1179 LIITDIMMPGMNGLEFINNLKDDKFT-KHIPLVIVSAK 1215
>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
[Marinobacter algicola DG893]
gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
[Marinobacter algicola DG893]
Length = 230
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L D E H L VD LI+ D+ +PG +G EL +++K + T EIP ++++++
Sbjct: 31 LEAADAREAHALIVDKQPDLILLDWMLPGTSGVELARRLKKEEATA-EIPIIMLTAK 86
>gi|443470924|ref|ZP_21061000.1| Nitrogen regulation protein NR(I) [Pseudomonas pseudoalcaligenes
KF707]
gi|442900772|gb|ELS26829.1| Nitrogen regulation protein NR(I) [Pseudomonas pseudoalcaligenes
KF707]
Length = 476
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 36 DLIITDYCMPGMTGCELIKKIK 57
DL++TDYC+PGM+GC+LI + +
Sbjct: 48 DLVLTDYCLPGMSGCDLISRAR 69
>gi|340347005|ref|ZP_08670121.1| two component system sensor histidine kinase [Prevotella dentalis DSM
3688]
gi|433652223|ref|YP_007278602.1| signal transduction histidine kinase [Prevotella dentalis DSM 3688]
gi|339610508|gb|EGQ15358.1| two component system sensor histidine kinase [Prevotella dentalis DSM
3688]
gi|433302756|gb|AGB28572.1| signal transduction histidine kinase [Prevotella dentalis DSM 3688]
Length = 1398
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+++H D++ITD MP MTG EL + IK F+ IP V+++++
Sbjct: 1165 DDLHSAEADIVITDVLMPRMTGIELCRAIK-ADFSICHIPVVLLTAQ 1210
>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1334
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 8 LLSRLMS---------DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKL 58
LL+RL S DG +GF+ T+EV D++++D MP M+G E+ +KIK
Sbjct: 1098 LLARLFSKIYTVYEAQDGEEGFE----KTKEVQP---DIVLSDIMMPKMSGIEMCRKIK- 1149
Query: 59 QSFTFREIPTVIISSE 74
+F IP ++++++
Sbjct: 1150 SNFETSHIPVILLTAQ 1165
>gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
Length = 1334
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 8 LLSRLMS---------DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKL 58
LL+RL S DG +GF+ T+EV D++++D MP M+G E+ +KIK
Sbjct: 1098 LLARLFSRIYTVYEAQDGEEGFE----KTKEVQP---DIVLSDIMMPKMSGIEMCRKIK- 1149
Query: 59 QSFTFREIPTVIISSE 74
+F IP ++++++
Sbjct: 1150 SNFETSHIPVILLTAQ 1165
>gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
gi|217985979|gb|EEC52318.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides eggerthii DSM 20697]
Length = 1334
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 17/76 (22%)
Query: 8 LLSRLMS---------DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKL 58
LL+RL S DG +GF+ T+EV D++++D MP M+G E+ +KIK
Sbjct: 1098 LLARLFSKIYTVYEAQDGEEGFE----KTKEVQP---DIVLSDIMMPKMSGIEMCRKIK- 1149
Query: 59 QSFTFREIPTVIISSE 74
+F IP ++++++
Sbjct: 1150 SNFETSHIPVILLTAQ 1165
>gi|94986969|ref|YP_594902.1| CheY-like receiver [Lawsonia intracellularis PHE/MN1-00]
gi|442555800|ref|YP_007365625.1| response regulator receiver protein [Lawsonia intracellularis
N343]
gi|94731218|emb|CAJ54580.1| CheY-like receiver [Lawsonia intracellularis PHE/MN1-00]
gi|441493247|gb|AGC49941.1| response regulator receiver protein [Lawsonia intracellularis
N343]
Length = 126
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
T E ++ +D +++D+ MP MTG EL++K++ S + E+P +++++E
Sbjct: 42 TAWEMINKEKIDFVVSDWNMPQMTGIELLRKVRA-SEQYSELPFLMVTAE 90
>gi|357406322|ref|YP_004918246.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylomicrobium alcaliphilum 20Z]
gi|351718987|emb|CCE24661.1| Phosphate regulon transcriptional regulatory protein PhoB
[Methylomicrobium alcaliphilum 20Z]
Length = 230
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 19 GFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
GF+ S EV L + DLI+ D+ +PG++G E +++K F +REIP +++++
Sbjct: 27 GFEASQCADAEVANLILQERMPDLIVLDWMLPGISGIEWARRLKKDQF-YREIPIILLTA 85
>gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
Length = 950
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++VH+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 727 KKVHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 773
>gi|77361535|ref|YP_341110.1| two-component response regulator [Pseudoalteromonas haloplanktis
TAC125]
gi|76876446|emb|CAI87668.1| putative two-component response regulator [Pseudoalteromonas
haloplanktis TAC125]
Length = 299
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEE--VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
N ++L + +SD + F + D + VDLII D MPGM G E++ K+K S T
Sbjct: 16 NRIVLEKTLSDEHEVFLVKSGDEALTFIKTTQVDLIILDIVMPGMNGYEVLVKLKEDSAT 75
Query: 63 FREIPTVIISSEN 75
+ IP + IS+ +
Sbjct: 76 -QMIPVIFISANS 87
>gi|83646439|ref|YP_434874.1| hypothetical protein HCH_03713 [Hahella chejuensis KCTC 2396]
gi|83634482|gb|ABC30449.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
Length = 568
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 10 SRLMSD--GSDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFT 62
++L++D + GFD P + + AV DLII D MPG TG EL ++IK Q
Sbjct: 19 TKLLTDIFRAQGFDAIPLNDANEVIGAVASYEPDLIILDVMMPGKTGFELTREIKAQEH- 77
Query: 63 FREIPTVIISS 73
++ IP +++++
Sbjct: 78 WKHIPIILLTA 88
>gi|15611426|ref|NP_223077.1| response regulator [Helicobacter pylori J99]
gi|385221877|ref|YP_005771010.1| response regulator [Helicobacter pylori SouthAfrica7]
gi|386755439|ref|YP_006228656.1| response regulator [Helicobacter pylori PeCan18]
gi|12229777|sp|Q9ZM64.1|CHEY_HELPJ RecName: Full=Chemotaxis protein CheY homolog
gi|4154896|gb|AAD05946.1| response regulator [Helicobacter pylori J99]
gi|317010656|gb|ADU84403.1| response regulator [Helicobacter pylori SouthAfrica7]
gi|384561697|gb|AFI02163.1| response regulator [Helicobacter pylori PeCan18]
Length = 124
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ITD+ MP M G +L+KK++ + F+EIP ++I++E
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRADN-RFKEIPIIMITTE 85
>gi|83643136|ref|YP_431571.1| type II secretory pathway ATPase PulE/Tfp pilus assembly pathway
ATPase PilB [Hahella chejuensis KCTC 2396]
gi|83631179|gb|ABC27146.1| Type II secretory pathway, ATPase PulE/Tfp pilus assembly
pathway, ATPase PilB [Hahella chejuensis KCTC 2396]
Length = 745
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQS 60
V L+++DY MPGMTG +L++K+K QS
Sbjct: 71 VHLLVSDYMMPGMTGADLLRKVKEQS 96
>gi|348030216|ref|YP_004872902.1| DNA-binding response regulator PhoB [Glaciecola nitratireducens
FR1064]
gi|347947559|gb|AEP30909.1| putative DNA-binding response regulator PhoB [Glaciecola
nitratireducens FR1064]
Length = 235
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++ FD++ E+V DLI+ D+ +PG +G +L KK+K FT R+IP +++++
Sbjct: 38 AEDFDVA---LEKVKEPYPDLILLDWMLPGGSGVQLAKKLKQHEFT-RDIPVIMLTA 90
>gi|85859036|ref|YP_461238.1| chemotaxis protein [Syntrophus aciditrophicus SB]
gi|85722127|gb|ABC77070.1| chemotaxis protein [Syntrophus aciditrophicus SB]
Length = 145
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VD+I++D MP M G EL+ ++K Q F+EIP ++I++E R++
Sbjct: 52 VDVILSDINMPEMNGLELLSRLK-QDDLFKEIPVIMITTEGSSPRMEE 98
>gi|325109954|ref|YP_004271022.1| response regulator receiver protein [Planctomyces brasiliensis
DSM 5305]
gi|324970222|gb|ADY61000.1| response regulator receiver protein [Planctomyces brasiliensis
DSM 5305]
Length = 121
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
D++ TD+ MP M G EL++ I+ ++ REIP ++I++E+ +R+
Sbjct: 47 DIVFTDWNMPNMDGLELLQAIRAEN---REIPVIMITTESERSRV 88
>gi|186473960|ref|YP_001861302.1| response regulator receiver protein [Burkholderia phymatum
STM815]
gi|184196292|gb|ACC74256.1| response regulator receiver protein [Burkholderia phymatum
STM815]
Length = 225
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ DG DG L+P +V I+TD MP M+G E++++I+ F++IP +++
Sbjct: 30 IAQDGLDGLRLAPESCPQV-------IVTDVMMPLMSGPEMVRRIRAMP-GFQQIPVIVM 81
Query: 72 SS 73
S+
Sbjct: 82 SA 83
>gi|440679978|ref|YP_007154773.1| two component transcriptional regulator, LuxR family [Anabaena
cylindrica PCC 7122]
gi|428677097|gb|AFZ55863.1| two component transcriptional regulator, LuxR family [Anabaena
cylindrica PCC 7122]
Length = 227
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ QS FR +P +++++
Sbjct: 48 DLIVTDIVMPRMNGYELVRRVRKQS-EFRLLPVILLTA 84
>gi|357632967|ref|ZP_09130845.1| response regulator receiver protein [Desulfovibrio sp. FW1012B]
gi|386392586|ref|ZP_10077367.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfovibrio sp. U5L]
gi|357581521|gb|EHJ46854.1| response regulator receiver protein [Desulfovibrio sp. FW1012B]
gi|385733464|gb|EIG53662.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfovibrio sp. U5L]
Length = 127
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DGS ++ D +D II+D+ MP M G EL++K++ S F E+P +++++E
Sbjct: 39 DGSSAWETLNKDK-------IDFIISDWNMPKMPGIELLRKVR-SSEEFAELPFLMVTAE 90
>gi|357406085|ref|YP_004918009.1| response regulator receiver [Methylomicrobium alcaliphilum 20Z]
gi|351718750|emb|CCE24424.1| Response regulator receiver [Methylomicrobium alcaliphilum 20Z]
Length = 179
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 36 DLIITDYCMPGMTGCELIKK-IKLQSFTFREIPT 68
DL+I+DY MPGM G E +KK IKLQ R I T
Sbjct: 49 DLVISDYRMPGMDGVEFLKKFIKLQPNAMRMILT 82
>gi|294674076|ref|YP_003574692.1| response regulator PhoB [Prevotella ruminicola 23]
gi|294472329|gb|ADE81718.1| response regulator PhoB [Prevotella ruminicola 23]
Length = 121
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLII+D MPGM G + ++ IK Q+ F++IP +++SSE+
Sbjct: 48 DLIISDIRMPGMRGDDFLEWIK-QNELFKQIPVIMLSSED 86
>gi|427727818|ref|YP_007074055.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Nostoc sp. PCC 7524]
gi|427363737|gb|AFY46458.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Nostoc sp. PCC 7524]
Length = 125
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+I+TD MPGM+G EL + +K T ++P VI SS+N IDR
Sbjct: 52 DVIVTDVVMPGMSGFELCRSLKKNQIT-EKVPIVICSSKN--QEIDR 95
>gi|254513978|ref|ZP_05126039.1| adenylate cyclase 1 (ATP pyrophosphate-lyase 1) [gamma
proteobacterium NOR5-3]
gi|219676221|gb|EED32586.1| adenylate cyclase 1 (ATP pyrophosphate-lyase 1) [gamma
proteobacterium NOR5-3]
Length = 496
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 5 NGVLLSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSF 61
N LL+R ++ +P E + +LA VD+++ D MPGM G E++++IK +
Sbjct: 153 NRELLARYLTRSGHFVVTAPGGAEALEMLANADVDVVLLDRMMPGMDGREVLRRIKAEP- 211
Query: 62 TFREIPTVIISSE 74
R P ++IS E
Sbjct: 212 KLRATPVIMISGE 224
>gi|325971110|ref|YP_004247301.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Sphaerochaeta globus str. Buddy]
gi|324026348|gb|ADY13107.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Sphaerochaeta globus str. Buddy]
Length = 453
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 10/59 (16%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
SDG + + E+++ L VDL+ITD MP M+G +L+KKI S + +P +I++
Sbjct: 33 SDGQEAW-------EKINKLGVDLVITDLRMPKMSGEDLLKKI---SGAYPRMPVIILT 81
>gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
B-, and HSP90-like ATPase./Response regulator receiver
domain./Two component regulator propeller./Bacterial
regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
domain. [Bacteroides xylanisolvens XB1A]
Length = 1465
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
+++H+ D+++TD MP M G E+++ I+ + F IP +I++++N
Sbjct: 1242 KKIHLYHPDIVVTDQMMPEMDGLEMLQSIR-KDFQISHIPVIILTAKN 1288
>gi|118581451|ref|YP_902701.1| response regulator receiver modulated metal dependent
phosphohydrolase [Pelobacter propionicus DSM 2379]
gi|118504161|gb|ABL00644.1| response regulator receiver modulated metal dependent
phosphohydrolase [Pelobacter propionicus DSM 2379]
Length = 365
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
VDLI+TD MPGMTG EL++KI+ + RE P +++++
Sbjct: 51 VDLILTDINMPGMTGIELLEKIR---YLDRETPVLLMTA 86
>gi|167628686|ref|YP_001679185.1| two component diguanylate cyclase [Heliobacterium modesticaldum
Ice1]
gi|167591426|gb|ABZ83174.1| two component diguanylate cyclase [Heliobacterium modesticaldum
Ice1]
Length = 324
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 16 GSDGFDLSPTDTEE---VHVL---AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
SDGF++ T + + H+ ++DLI+ D MPG+ G EL ++IK + +R++P +
Sbjct: 21 ASDGFEVYATASAQEALAHLQDRPSIDLILLDVIMPGIDGIELCQQIKSDA-AWRDVPVI 79
Query: 70 IISSENILARIDR 82
++++ + +DR
Sbjct: 80 MVTALTNIEDLDR 92
>gi|384890767|ref|YP_005764900.1| Chemotaxis regulator [Helicobacter pylori 908]
gi|385223441|ref|YP_005783367.1| Chemotaxis regulator protein [Helicobacter pylori 2017]
gi|385231290|ref|YP_005791209.1| Chemotaxis regulator [Helicobacter pylori 2018]
gi|420423280|ref|ZP_14922353.1| response regulator [Helicobacter pylori Hp A-4]
gi|420424976|ref|ZP_14924040.1| response regulator [Helicobacter pylori Hp A-5]
gi|420428401|ref|ZP_14927436.1| response regulator [Helicobacter pylori Hp A-17]
gi|420430077|ref|ZP_14929107.1| response regulator [Helicobacter pylori Hp A-20]
gi|420438425|ref|ZP_14937399.1| response regulator [Helicobacter pylori Hp H-29]
gi|420441751|ref|ZP_14940696.1| response regulator [Helicobacter pylori Hp H-36]
gi|420443385|ref|ZP_14942313.1| response regulator [Helicobacter pylori Hp H-41]
gi|420445022|ref|ZP_14943936.1| response regulator [Helicobacter pylori Hp H-42]
gi|420448408|ref|ZP_14947288.1| response regulator [Helicobacter pylori Hp H-44]
gi|420456647|ref|ZP_14955468.1| response regulator [Helicobacter pylori Hp A-16]
gi|420463376|ref|ZP_14962154.1| response regulator [Helicobacter pylori Hp H-4]
gi|420465078|ref|ZP_14963845.1| response regulator [Helicobacter pylori Hp H-6]
gi|420468446|ref|ZP_14967188.1| response regulator [Helicobacter pylori Hp H-10]
gi|420471868|ref|ZP_14970564.1| response regulator [Helicobacter pylori Hp H-18]
gi|420473788|ref|ZP_14972466.1| response regulator [Helicobacter pylori Hp H-19]
gi|420475262|ref|ZP_14973933.1| response regulator [Helicobacter pylori Hp H-21]
gi|420477483|ref|ZP_14976140.1| response regulator [Helicobacter pylori Hp H-23]
gi|420478842|ref|ZP_14977494.1| response regulator [Helicobacter pylori Hp H-34]
gi|420480421|ref|ZP_14979065.1| hypothetical protein HPHPP1_0630 [Helicobacter pylori Hp P-1]
gi|420485424|ref|ZP_14984042.1| hypothetical protein HPHPP4_0597 [Helicobacter pylori Hp P-4]
gi|420487014|ref|ZP_14985622.1| response regulator [Helicobacter pylori Hp P-8]
gi|420488614|ref|ZP_14987214.1| response regulator [Helicobacter pylori Hp P-11]
gi|420498951|ref|ZP_14997508.1| response regulator [Helicobacter pylori Hp P-26]
gi|420502362|ref|ZP_15000903.1| response regulator [Helicobacter pylori Hp P-41]
gi|420503942|ref|ZP_15002472.1| response regulator [Helicobacter pylori Hp P-62]
gi|420510866|ref|ZP_15009355.1| hypothetical protein HPHPP1B_0653 [Helicobacter pylori Hp P-1b]
gi|420515914|ref|ZP_15014377.1| hypothetical protein HPHPP4C_0633 [Helicobacter pylori Hp P-4c]
gi|420517620|ref|ZP_15016074.1| hypothetical protein HPHPP4D_0634 [Helicobacter pylori Hp P-4d]
gi|420520900|ref|ZP_15019331.1| hypothetical protein HPHPP8B_0487 [Helicobacter pylori Hp P-8b]
gi|420522542|ref|ZP_15020966.1| hypothetical protein HPHPP11B_0505 [Helicobacter pylori Hp P-11b]
gi|420530906|ref|ZP_15029281.1| hypothetical protein HPHPP28B_0387 [Helicobacter pylori Hp P-28b]
gi|421711390|ref|ZP_16150733.1| hypothetical protein OUE_0482 [Helicobacter pylori R030b]
gi|425432089|ref|ZP_18812663.1| chemotaxis protein CheY-like protein [Helicobacter pylori
GAM100Ai]
gi|307637076|gb|ADN79526.1| Chemotaxis regulator [Helicobacter pylori 908]
gi|325995667|gb|ADZ51072.1| Chemotaxis regulator [Helicobacter pylori 2018]
gi|325997263|gb|ADZ49471.1| Chemotaxis regulator protein [Helicobacter pylori 2017]
gi|393042560|gb|EJB43569.1| response regulator [Helicobacter pylori Hp A-4]
gi|393043563|gb|EJB44567.1| response regulator [Helicobacter pylori Hp A-5]
gi|393046060|gb|EJB47040.1| response regulator [Helicobacter pylori Hp A-17]
gi|393048696|gb|EJB49663.1| response regulator [Helicobacter pylori Hp A-20]
gi|393056025|gb|EJB56937.1| response regulator [Helicobacter pylori Hp H-29]
gi|393059880|gb|EJB60755.1| response regulator [Helicobacter pylori Hp H-36]
gi|393060892|gb|EJB61761.1| response regulator [Helicobacter pylori Hp H-41]
gi|393063216|gb|EJB64063.1| response regulator [Helicobacter pylori Hp H-42]
gi|393065762|gb|EJB66590.1| response regulator [Helicobacter pylori Hp H-44]
gi|393075278|gb|EJB76033.1| response regulator [Helicobacter pylori Hp A-16]
gi|393080904|gb|EJB81629.1| response regulator [Helicobacter pylori Hp H-4]
gi|393082565|gb|EJB83281.1| response regulator [Helicobacter pylori Hp H-6]
gi|393088127|gb|EJB88779.1| response regulator [Helicobacter pylori Hp H-10]
gi|393090916|gb|EJB91549.1| response regulator [Helicobacter pylori Hp H-19]
gi|393091223|gb|EJB91855.1| response regulator [Helicobacter pylori Hp H-18]
gi|393092891|gb|EJB93509.1| response regulator [Helicobacter pylori Hp H-23]
gi|393093369|gb|EJB93986.1| response regulator [Helicobacter pylori Hp H-21]
gi|393096397|gb|EJB96995.1| response regulator [Helicobacter pylori Hp H-34]
gi|393098334|gb|EJB98926.1| hypothetical protein HPHPP1_0630 [Helicobacter pylori Hp P-1]
gi|393103559|gb|EJC04122.1| hypothetical protein HPHPP4_0597 [Helicobacter pylori Hp P-4]
gi|393104567|gb|EJC05124.1| response regulator [Helicobacter pylori Hp P-8]
gi|393109185|gb|EJC09717.1| response regulator [Helicobacter pylori Hp P-11]
gi|393121374|gb|EJC21857.1| hypothetical protein HPHPP1B_0653 [Helicobacter pylori Hp P-1b]
gi|393123119|gb|EJC23588.1| hypothetical protein HPHPP4D_0634 [Helicobacter pylori Hp P-4d]
gi|393124213|gb|EJC24681.1| hypothetical protein HPHPP4C_0633 [Helicobacter pylori Hp P-4c]
gi|393127487|gb|EJC27932.1| hypothetical protein HPHPP8B_0487 [Helicobacter pylori Hp P-8b]
gi|393129499|gb|EJC29933.1| hypothetical protein HPHPP11B_0505 [Helicobacter pylori Hp P-11b]
gi|393138932|gb|EJC39313.1| hypothetical protein HPHPP28B_0387 [Helicobacter pylori Hp P-28b]
gi|393152930|gb|EJC53226.1| response regulator [Helicobacter pylori Hp P-26]
gi|393153642|gb|EJC53935.1| response regulator [Helicobacter pylori Hp P-41]
gi|393155331|gb|EJC55608.1| response regulator [Helicobacter pylori Hp P-62]
gi|407212539|gb|EKE82401.1| hypothetical protein OUE_0482 [Helicobacter pylori R030b]
gi|410715401|gb|EKQ72822.1| chemotaxis protein CheY-like protein [Helicobacter pylori
GAM100Ai]
Length = 113
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ + F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRADN-RFKEIPIIMITTEGGKAEV 80
>gi|113477455|ref|YP_723516.1| two component LuxR family transcriptional regulator
[Trichodesmium erythraeum IMS101]
gi|110168503|gb|ABG53043.1| two component transcriptional regulator, LuxR family
[Trichodesmium erythraeum IMS101]
Length = 230
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG FD+ + E H LIITD MP M G EL+K+++ + +FR +P + +++
Sbjct: 34 DGQQAFDI--VEKSEPH-----LIITDIAMPKMDGYELVKRVRARP-SFRLLPVIFLTAH 85
>gi|251799285|ref|YP_003014016.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2]
gi|247546911|gb|ACT03930.1| two component transcriptional regulator, AraC family
[Paenibacillus sp. JDR-2]
Length = 507
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 4 TNGVLLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTF 63
++G L +SDG + ++ + DL+ TD MP M G ELI+++K QS
Sbjct: 25 SHGFRLCWAVSDGKEALEVMEREVP-------DLVFTDLQMPVMDGLELIRQMK-QSQGL 76
Query: 64 REIPTVIIS 72
+EI TVI+S
Sbjct: 77 KEIKTVIVS 85
>gi|406876972|gb|EKD26364.1| hypothetical protein ACD_79C01240G0004 [uncultured bacterium]
Length = 454
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIK 57
+ DL+ITDYCMP M+G EL +KIK
Sbjct: 40 SYDLVITDYCMPDMSGLELTRKIK 63
>gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille]
gi|151282803|gb|ABR91213.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille]
Length = 121
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + T DL++TD MP M G LI+ ++ S T+++IP +++++E
Sbjct: 34 DGQDGLDKAKTQV-------FDLVLTDQNMPRMDGFSLIRALRALS-TYQKIPILVLTTE 85
Query: 75 N 75
+
Sbjct: 86 S 86
>gi|420452437|ref|ZP_14951282.1| response regulator [Helicobacter pylori Hp A-6]
gi|393067598|gb|EJB68407.1| response regulator [Helicobacter pylori Hp A-6]
Length = 113
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ + F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRADN-RFKEIPIIMITTEGGKAEV 80
>gi|393789634|ref|ZP_10377754.1| hypothetical protein HMPREF1068_04034 [Bacteroides nordii CL02T12C05]
gi|392650350|gb|EIY44019.1| hypothetical protein HMPREF1068_04034 [Bacteroides nordii CL02T12C05]
Length = 1330
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++G++ FD+ + +D++ITD MP M G EL KKIK + IP V++++
Sbjct: 1097 TNGAEAFDI-------IERKNIDIVITDIMMPIMDGFELCKKIK-TDIEYCHIPVVLLTA 1148
Query: 74 ENILA 78
+N L+
Sbjct: 1149 KNDLS 1153
>gi|428309880|ref|YP_007120857.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Microcoleus sp. PCC
7113]
gi|428251492|gb|AFZ17451.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Microcoleus sp. PCC
7113]
Length = 120
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+I+TD MPGM+G EL ++IK T + IP VI SS++ IDR
Sbjct: 47 DVIVTDVVMPGMSGFELCRRIKNNPLTTK-IPIVICSSKD--QEIDR 90
>gi|77362087|ref|YP_341661.1| response regulator receiver domain-containing protein
[Pseudoalteromonas haloplanktis TAC125]
gi|76876998|emb|CAI89215.1| putative two domain protein: response regulator receiver domain
protein [Pseudoalteromonas haloplanktis TAC125]
Length = 265
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E+++ A DLI+TDY MP M G EL ++ S ++ IP +++SSE
Sbjct: 184 EQLNEQAFDLIVTDYNMPEMDGRELTAAVR-GSNSYSHIPILMVSSE 229
>gi|283954683|ref|ZP_06372201.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
414]
gi|283793875|gb|EFC32626.1| chemotaxis regulatory protein [Campylobacter jejuni subsp. jejuni
414]
Length = 121
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E++ VL ITD+ MP M G EL+KK++ +
Sbjct: 9 LTRLGHDDVLEAEHGVEAWDLL-TKNEDIKVL-----ITDWNMPEMNGLELVKKVRAEK- 61
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 62 KYEDMPIIMVTTEGGKAEV 80
>gi|116695984|ref|YP_841560.1| chemotaxis specific sensory transducer kinase [Ralstonia eutropha
H16]
gi|113530483|emb|CAJ96830.1| chemotaxis specific sensory transducer kinase,group IIIA,
containing a receiver domain (hybrid) [Ralstonia
eutropha H16]
Length = 751
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG+++ + DL+ITD MP M G EL+++I+ Q R++P +++S +
Sbjct: 659 DGMDGWNV-------LRAEPFDLVITDIDMPRMDGIELVRRIR-QDAALRQLPVMVVSYK 710
Query: 75 N 75
+
Sbjct: 711 D 711
>gi|339323290|ref|YP_004682184.1| chemotaxis protein CheW [Cupriavidus necator N-1]
gi|338169898|gb|AEI80952.1| chemotaxis protein CheA [Cupriavidus necator N-1]
Length = 751
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG+++ + DL+ITD MP M G EL+++I+ Q R++P +++S +
Sbjct: 659 DGMDGWNV-------LRAEPFDLVITDIDMPRMDGIELVRRIR-QDAALRQLPVMVVSYK 710
Query: 75 N 75
+
Sbjct: 711 D 711
>gi|298528407|ref|ZP_07015811.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512059|gb|EFI35961.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 127
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG+ +++ D +D I++D+ MP MTG EL++K++ S F ++P +++++E
Sbjct: 39 DGTTAWEILNKD-------KIDFIVSDWNMPKMTGIELLRKVR-SSEEFSDLPFLMVTAE 90
>gi|329911669|ref|ZP_08275592.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Oxalobacteraceae
bacterium IMCC9480]
gi|327545819|gb|EGF30940.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Oxalobacteraceae
bacterium IMCC9480]
Length = 84
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+++TD+ MPGMTG EL++ I+ + + +P ++I++ ENILA
Sbjct: 1 MVVTDWSMPGMTGLELLRAIRKEP-DLQHLPVLLITAEARKENILA 45
>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. EE-36]
gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. EE-36]
Length = 229
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 17 SDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
S+GFD+ + E +L V DLII D+ MP ++G E+ +++K + T R IP +++
Sbjct: 27 SEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEVCRQLKTREDT-RNIPVIML 85
Query: 72 SSEN 75
S+ +
Sbjct: 86 SARS 89
>gi|303283994|ref|XP_003061288.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457639|gb|EEH54938.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 711
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A+DL++TD MP + G EL+K ++ FR IP +++S+
Sbjct: 98 AIDLVLTDIMMPEVDGLELMKIVQSSDKPFRSIPIIVMST 137
>gi|427736815|ref|YP_007056359.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427371856|gb|AFY55812.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Rivularia sp. PCC 7116]
Length = 428
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 11 RLMSDGSD--GFDLS-----PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTF 63
RL+ D D GFD+S T E++H + DLI+ D MPG+ G E ++IK + T
Sbjct: 17 RLLFDVLDNAGFDISVVRNGETALEKLHYIQPDLILLDVMMPGIDGFETCRRIKSNTET- 75
Query: 64 REIPTVIISS 73
R+IP + +++
Sbjct: 76 RDIPIIFMTA 85
>gi|224370794|ref|YP_002604958.1| protein CheY [Desulfobacterium autotrophicum HRM2]
gi|223693511|gb|ACN16794.1| CheY [Desulfobacterium autotrophicum HRM2]
Length = 124
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+VDLII+D+ MP MTG EL+K ++ S +++ P +++++E
Sbjct: 49 SVDLIISDWNMPKMTGLELLKSVR-ASDRYKKTPFLMVTAE 88
>gi|423224152|ref|ZP_17210620.1| hypothetical protein HMPREF1062_02806 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392636508|gb|EIY30389.1| hypothetical protein HMPREF1062_02806 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 1322
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1117 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1164
>gi|295086765|emb|CBK68288.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1385
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1161 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1212
>gi|260642119|ref|ZP_05859255.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260623261|gb|EEX46132.1| response regulator receiver domain protein [Bacteroides finegoldii
DSM 17565]
Length = 1206
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 980 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1031
>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. NAS-14.1]
gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. NAS-14.1]
Length = 229
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 17 SDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
S+GFD+ + E +L V DLII D+ MP ++G E+ +++K + T R IP +++
Sbjct: 27 SEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEVCRQLKTREDT-RNIPVIML 85
Query: 72 SSEN 75
S+ +
Sbjct: 86 SARS 89
>gi|83310215|ref|YP_420479.1| Serine phosphatase RsbU regulator sigma subunit [Magnetospirillum
magneticum AMB-1]
gi|82945056|dbj|BAE49920.1| Serine phosphatase RsbU regulator sigma subunit [Magnetospirillum
magneticum AMB-1]
Length = 537
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E V A DL++ D MPGM G E++K IK S R +P ++IS+ + L I R
Sbjct: 196 EAVFGQAFDLVLLDMIMPGMNGDEVLKAIKADS-RLRSLPVIMISALDGLDSIVR 249
>gi|423294953|ref|ZP_17273080.1| hypothetical protein HMPREF1070_01745 [Bacteroides ovatus CL03T12C18]
gi|392674533|gb|EIY67979.1| hypothetical protein HMPREF1070_01745 [Bacteroides ovatus CL03T12C18]
Length = 1445
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1221 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1272
>gi|357404813|ref|YP_004916737.1| chemotaxis protein CheY [Methylomicrobium alcaliphilum 20Z]
gi|351717478|emb|CCE23143.1| Chemotaxis protein CheY (2 CheY domains) [Methylomicrobium
alcaliphilum 20Z]
Length = 268
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 6 GVLLSRLMSDGSDG---FDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
G+ L +DG+D F SP A DLI+TDY MP M G ELI+ I+
Sbjct: 168 GIQCVTLANDGTDALAIFAESPD--------AFDLIVTDYNMPEMDGQELIEAIRANREN 219
Query: 63 FREIPTVIISSENILARIDR 82
IP ++++SE+ A +++
Sbjct: 220 -SSIPILMVTSESNQATLNK 238
>gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72]
gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72]
Length = 301
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
AVDLI+ D MPGM+G ++++++K T +++P + I+S N
Sbjct: 49 AVDLILLDVVMPGMSGHDVLRRLKASDAT-KDVPVIFITSLN 89
>gi|357404287|ref|YP_004916211.1| type II secretion system protein E:response regulator
receiver:general secretory system II, protein E,
N-terminal, partial [Methylomicrobium alcaliphilum 20Z]
gi|351716952|emb|CCE22617.1| Type II secretion system protein E:Response regulator
receiver:General secretory system II, protein E,
N-terminal [Methylomicrobium alcaliphilum 20Z]
Length = 748
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 9 LSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKL 58
L R+ + +++ + E +H LA LII+DY MPGM G EL++++K+
Sbjct: 45 LRRVFRQENYRVEVAMSGDEALHTLANGQFQLIISDYKMPGMNGAELLRRVKM 97
>gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein
[Herbaspirillum seropedicae SmR1]
gi|300073811|gb|ADJ63210.1| chemotaxis response regulator receiver domain protein
[Herbaspirillum seropedicae SmR1]
Length = 134
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
++D DG S E L + +ITD+ MPGM G L+KKI+ ++ + +P +++S
Sbjct: 32 VTDADDG--TSAWKILESGALPISFVITDWNMPGMDGLGLLKKIR-ETPRLKRLPVLMVS 88
Query: 73 SE 74
+E
Sbjct: 89 AE 90
>gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc
punctiforme PCC 73102]
gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc
punctiforme PCC 73102]
Length = 629
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
D+IITD MP + G ELI++++ QS F+EIP ++ SS ++ A
Sbjct: 465 DMIITDLVMPILDGFELIRRLR-QSGAFKEIP-IVASSASVFA 505
>gi|336406840|ref|ZP_08587486.1| hypothetical protein HMPREF0127_04799 [Bacteroides sp. 1_1_30]
gi|335948513|gb|EGN10217.1| hypothetical protein HMPREF0127_04799 [Bacteroides sp. 1_1_30]
Length = 1445
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1221 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1272
>gi|336405176|ref|ZP_08585860.1| hypothetical protein HMPREF0127_03173 [Bacteroides sp. 1_1_30]
gi|423217270|ref|ZP_17203766.1| hypothetical protein HMPREF1061_00539 [Bacteroides caccae CL03T12C61]
gi|423287081|ref|ZP_17265932.1| hypothetical protein HMPREF1069_00975 [Bacteroides ovatus CL02T12C04]
gi|335939177|gb|EGN01055.1| hypothetical protein HMPREF0127_03173 [Bacteroides sp. 1_1_30]
gi|392628429|gb|EIY22455.1| hypothetical protein HMPREF1061_00539 [Bacteroides caccae CL03T12C61]
gi|392673913|gb|EIY67368.1| hypothetical protein HMPREF1069_00975 [Bacteroides ovatus CL02T12C04]
Length = 1322
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1117 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1164
>gi|299148516|ref|ZP_07041578.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298513277|gb|EFI37164.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1428
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1255
>gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|380694917|ref|ZP_09859776.1| two-component system sensor histidine kinase/response regulator
[Bacteroides faecis MAJ27]
gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1307
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1102 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1149
>gi|163785262|ref|ZP_02179926.1| response regulator receiver domain protein (CheY-like)
[Hydrogenivirga sp. 128-5-R1-1]
gi|159879469|gb|EDP73309.1| response regulator receiver domain protein (CheY-like)
[Hydrogenivirga sp. 128-5-R1-1]
Length = 131
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG D + ++ D +ITD+ MP MTG EL+++I+ + + +P +++++
Sbjct: 39 EDGKDALN-------KLKAQKYDFVITDWNMPNMTGLELVQEIRKEP-DLKHLPVLMVTA 90
Query: 74 ----ENILARI 80
EN++A I
Sbjct: 91 EAKKENVIAAI 101
>gi|423300502|ref|ZP_17278527.1| hypothetical protein HMPREF1057_01668 [Bacteroides finegoldii
CL09T03C10]
gi|408472800|gb|EKJ91325.1| hypothetical protein HMPREF1057_01668 [Bacteroides finegoldii
CL09T03C10]
Length = 1322
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1117 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1164
>gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
Length = 1307
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1102 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1149
>gi|434407186|ref|YP_007150071.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Cylindrospermum stagnale PCC
7417]
gi|428261441|gb|AFZ27391.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Cylindrospermum stagnale PCC
7417]
Length = 227
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG + + EE H DLI+TD MP M G EL+++++ Q FR +P +++++
Sbjct: 34 DGQEALAM----VEEYHP---DLIVTDIVMPRMNGYELVRRVRQQP-AFRLLPVILLTA 84
>gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1329
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1124 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1171
>gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260623317|gb|EEX46188.1| response regulator receiver domain protein [Bacteroides finegoldii
DSM 17565]
Length = 1329
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1124 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1171
>gi|443311612|ref|ZP_21041238.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Synechocystis sp. PCC 7509]
gi|442778341|gb|ELR88608.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Synechocystis sp. PCC 7509]
Length = 220
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 19/85 (22%)
Query: 9 LSRLMSDGSDGFDLSPTDTEEVH----VLAVD--------------LIITDYCMPGMTGC 50
L+ L++D G L+ D E+H ++AVD L++TD MP + G
Sbjct: 3 LTILIADDDLGTRLAIGDYLEIHGYSVIMAVDGQTALEMVEAYHPHLMVTDIIMPRLNGY 62
Query: 51 ELIKKIKLQSFTFREIPTVIISSEN 75
EL++K++ Q FR +P + +SS N
Sbjct: 63 ELVRKVR-QHPVFRLLPVIFLSSRN 86
>gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345509102|ref|ZP_08788710.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345454892|gb|EEO49965.2| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1322
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE-NILARID 81
+VDLII+D MP M G EL K +K Q+ + IP ++++++ N+ +RI+
Sbjct: 1117 SVDLIISDIMMPLMDGVELCKHLK-QNLDYSHIPVILLTAKTNLESRIE 1164
>gi|408379905|ref|ZP_11177496.1| two component response regulator [Agrobacterium albertimagni
AOL15]
gi|407746282|gb|EKF57807.1| two component response regulator [Agrobacterium albertimagni
AOL15]
Length = 131
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
H D++I D+ +PGM+G + +K ++L +R++P V++++++
Sbjct: 42 HAENFDMLIVDHLLPGMSGLQFVKAVRLMD-RYRDVPVVMVTADD 85
>gi|392538392|ref|ZP_10285529.1| response regulator receiver domain-containing protein
[Pseudoalteromonas marina mano4]
Length = 265
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E+++ + DLI+TDY MP M G EL + ++ S T+ IP +++SSE
Sbjct: 184 EKLNEQSFDLIVTDYNMPEMDGRELTETVR-GSNTYSHIPILMVSSE 229
>gi|237721289|ref|ZP_04551770.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229449085|gb|EEO54876.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1428
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1255
>gi|441500919|ref|ZP_20983065.1| hypothetical protein C900_05898 [Fulvivirga imtechensis AK7]
gi|441435317|gb|ELR68715.1| hypothetical protein C900_05898 [Fulvivirga imtechensis AK7]
Length = 1232
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 1 MTTTNGVLLSRL----MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKI 56
+ TT +L++ G++G++++ L D++I+D MPGM G EL +K+
Sbjct: 1112 LQTTKNILINEYHVLEAKTGTEGYEMATQ-------LIPDVVISDVMMPGMNGYELCEKL 1164
Query: 57 KLQSFTFREIPTVIISSE 74
K T R IP +I++++
Sbjct: 1165 KTNGRT-RHIPIIILTAK 1181
>gi|291276453|ref|YP_003516225.1| chemotaxis regulatory protein [Helicobacter mustelae 12198]
gi|290963647|emb|CBG39479.1| chemotaxis regulatory protein [Helicobacter mustelae 12198]
Length = 124
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
G + +D+ D++ +D++ITD+ MP M G EL+KK + + + +IP +++++E
Sbjct: 34 GVEAWDILNGDSK------IDVLITDWNMPEMNGLELVKKTRADA-RYEDIPIIMVTTEG 86
Query: 76 ILARI 80
A +
Sbjct: 87 GKAEV 91
>gi|17229656|ref|NP_486204.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
gi|17131255|dbj|BAB73863.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
Length = 125
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+I+TD MPGM+G EL + +K T ++P VI SS+N IDR
Sbjct: 52 DVIVTDVVMPGMSGFELCRSLKKHPLT-EKLPIVICSSKN--QEIDR 95
>gi|217978618|ref|YP_002362765.1| histidine kinase [Methylocella silvestris BL2]
gi|217503994|gb|ACK51403.1| histidine kinase [Methylocella silvestris BL2]
Length = 559
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
A DL+ITDY MPGMTG EL + I+ ++ +P V+ S
Sbjct: 487 APDLVITDYAMPGMTGLELARAIRA---SYPALPIVLAS 522
>gi|406935458|gb|EKD69420.1| multi-sensor hybrid histidine kinase [uncultured bacterium]
Length = 780
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 18 DGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
D F + EE A DL+ITD MPGM G E++KKI+
Sbjct: 28 DSFTVPELAVEEYRKKAFDLVITDMQMPGMNGIEVLKKIR 67
>gi|393782322|ref|ZP_10370507.1| hypothetical protein HMPREF1071_01375 [Bacteroides salyersiae
CL02T12C01]
gi|392673593|gb|EIY67052.1| hypothetical protein HMPREF1071_01375 [Bacteroides salyersiae
CL02T12C01]
Length = 1335
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++G++ FD+ + + VD+++TD MP M G EL +KIK + IP V++++
Sbjct: 1102 TNGAEAFDI-------IQRVNVDIVVTDIMMPIMDGFELCRKIK-TDIEYCHIPVVLLTA 1153
Query: 74 ENIL 77
+N L
Sbjct: 1154 KNDL 1157
>gi|423288893|ref|ZP_17267744.1| hypothetical protein HMPREF1069_02787 [Bacteroides ovatus CL02T12C04]
gi|392668983|gb|EIY62475.1| hypothetical protein HMPREF1069_02787 [Bacteroides ovatus CL02T12C04]
Length = 1428
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1255
>gi|336414778|ref|ZP_08595122.1| hypothetical protein HMPREF1017_02230 [Bacteroides ovatus 3_8_47FAA]
gi|335942148|gb|EGN03996.1| hypothetical protein HMPREF1017_02230 [Bacteroides ovatus 3_8_47FAA]
Length = 1428
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1255
>gi|293369371|ref|ZP_06615956.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|292635538|gb|EFF54045.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1428
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1255
>gi|160887016|ref|ZP_02068019.1| hypothetical protein BACOVA_05030 [Bacteroides ovatus ATCC 8483]
gi|156107427|gb|EDO09172.1| response regulator receiver domain protein [Bacteroides ovatus ATCC
8483]
Length = 1428
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E+ DLII D MPGMTG E+ KK+K + F IP +++++
Sbjct: 1204 ADGISGF-------EKACNYDADLIICDVLMPGMTGFEVTKKLKTE-FATSHIPIILLTA 1255
>gi|384173214|ref|YP_005554591.1| chemotaxis protein CheY [Arcobacter sp. L]
gi|345472824|dbj|BAK74274.1| chemotaxis protein CheY [Arcobacter sp. L]
Length = 123
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+I+TD+ MP M G EL+KK++ + T ++ P ++I++E
Sbjct: 49 DVILTDWNMPNMNGLELVKKVRSEG-THQKTPIIMITTE 86
>gi|161523344|ref|YP_001578356.1| response regulator receiver protein [Burkholderia multivorans
ATCC 17616]
gi|189351883|ref|YP_001947511.1| two-component system response regulator [Burkholderia multivorans
ATCC 17616]
gi|421478592|ref|ZP_15926333.1| response regulator receiver domain protein [Burkholderia
multivorans CF2]
gi|160340773|gb|ABX13859.1| response regulator receiver protein [Burkholderia multivorans
ATCC 17616]
gi|189335905|dbj|BAG44975.1| two-component system response regulator [Burkholderia multivorans
ATCC 17616]
gi|400224448|gb|EJO54689.1| response regulator receiver domain protein [Burkholderia
multivorans CF2]
Length = 125
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG GFDL+ T A DL++TD MP +G ELI ++ Q + + P +++
Sbjct: 31 VAADGEAGFDLAAT-------TAYDLVLTDQNMPRKSGLELIAALR-QLSAYADTPILVL 82
Query: 72 SSEN 75
++E
Sbjct: 83 TTEG 86
>gi|354567019|ref|ZP_08986189.1| response regulator receiver protein [Fischerella sp. JSC-11]
gi|353543320|gb|EHC12778.1| response regulator receiver protein [Fischerella sp. JSC-11]
Length = 125
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+I+TD MPGM+G EL + +K T +++P VI SS+N IDR
Sbjct: 52 DVIVTDVVMPGMSGFELCRSLKKNPAT-QKVPIVICSSKN--QEIDR 95
>gi|444916227|ref|ZP_21236346.1| response regulator [Cystobacter fuscus DSM 2262]
gi|444712440|gb|ELW53363.1| response regulator [Cystobacter fuscus DSM 2262]
Length = 132
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 35 VDLIITDYCMPG-MTGCELIKKIKLQSFT-FREIPTVIIS 72
VDL+I D+ +PG M G EL+++I+ FT R++P V+++
Sbjct: 46 VDLVIADFNLPGSMDGVELVRRIRASEFTRVRQVPIVLLT 85
>gi|302878250|ref|YP_003846814.1| response regulator receiver protein [Gallionella
capsiferriformans ES-2]
gi|302581039|gb|ADL55050.1| response regulator receiver protein [Gallionella
capsiferriformans ES-2]
Length = 121
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + T VDL++TD MP M G LIK ++ ++R +P +++++E
Sbjct: 34 DGQDGLDKAKQKT-------VDLVLTDQNMPRMDGLTLIKSLRAMP-SYRSVPILMLTTE 85
Query: 75 N 75
+
Sbjct: 86 S 86
>gi|46581630|ref|YP_012438.1| chemotaxis protein CheY [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601211|ref|YP_965611.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
gi|387154828|ref|YP_005703764.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
gi|46451053|gb|AAS97698.1| chemotaxis protein CheY [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561440|gb|ABM27184.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
gi|311235272|gb|ADP88126.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
Length = 126
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
VD +I+D+ MP MTG EL++K++ S F ++P +++++E
Sbjct: 52 VDFVISDWNMPNMTGIELLRKVR-ASEEFGDMPFLMVTAE 90
>gi|194292500|ref|YP_002008407.1| response regulator receiver ATP-binding histidine kinase, chea
family [Cupriavidus taiwanensis LMG 19424]
gi|193226404|emb|CAQ72353.1| Response regulator receiver ATP-binding histidine kinase, cheA
family [Cupriavidus taiwanensis LMG 19424]
Length = 771
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG+++ + DL+ITD MP M G EL+++I+ Q R++P +++S +
Sbjct: 679 DGMDGWNV-------LRAEPFDLVITDIDMPRMDGIELVRRIR-QDAALRQLPVMVVSYK 730
Query: 75 N 75
+
Sbjct: 731 D 731
>gi|383115535|ref|ZP_09936291.1| hypothetical protein BSGG_2595 [Bacteroides sp. D2]
gi|313695060|gb|EFS31895.1| hypothetical protein BSGG_2595 [Bacteroides sp. D2]
Length = 1360
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+VDLII+D MPG+ G EL ++IK FT IP ++++++
Sbjct: 1145 SVDLIISDVMMPGIQGDELCRRIK-SDFTTSHIPVILLTAK 1184
>gi|406921068|gb|EKD59028.1| Sensor protein [uncultured bacterium]
Length = 266
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLIITD MP M+G E+I+++KL T ++IP +++++
Sbjct: 191 DLIITDIVMPAMSGDEIIRRLKLDDKT-KDIPVIVLTA 227
>gi|289577852|ref|YP_003476479.1| response regulator receiver protein [Thermoanaerobacter italicus
Ab9]
gi|289527565|gb|ADD01917.1| response regulator receiver protein [Thermoanaerobacter italicus
Ab9]
Length = 266
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 16 GSDGFDLSPTDTEEVHVLAV-------DLIITDYCMPGMTGCELIKKIKLQSFTFREIPT 68
G +G+D+ T E +L V DL+I D +P G E I+K+K Q+ ++ IP
Sbjct: 28 GVEGYDVETAATAEEAILKVKNKKELFDLVIVDINLPNQNGFEFIRKLKSQA-EYKNIPV 86
Query: 69 VIISSE 74
+I+S +
Sbjct: 87 MILSGD 92
>gi|404255792|ref|ZP_10959760.1| response regulator receiver protein [Sphingomonas sp. PAMC 26621]
Length = 121
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ G D +H + DL+ITD MP M G ELI+ ++ + FR P +++S+
Sbjct: 33 NDGAHGLD-------RMHEVVPDLLITDINMPKMDGFELIEAVRAVA-QFRGTPILVLST 84
Query: 74 E 74
E
Sbjct: 85 E 85
>gi|94500299|ref|ZP_01306832.1| CheY-like receiver protein [Oceanobacter sp. RED65]
gi|94427598|gb|EAT12575.1| CheY-like receiver protein [Oceanobacter sp. RED65]
Length = 122
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL+K ++ + +++P +++++E
Sbjct: 47 DFLVTDWNMPGMTGIELLKHVR-EDERLKDLPVLMVTAE 84
>gi|372487937|ref|YP_005027502.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Dechlorosoma suillum PS]
gi|359354490|gb|AEV25661.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Dechlorosoma suillum PS]
Length = 266
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 16 GSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
G + F + E V VL VDL++TDY MP M G L++ I+ QS+ +P ++++
Sbjct: 169 GIENFLEASNGKEAVSVLGETMVDLVLTDYNMPEMDGKALVEYIRQQSWQ-ATVPVLMVT 227
Query: 73 SENILARI 80
SE+ ++R+
Sbjct: 228 SESNMSRL 235
>gi|289523805|ref|ZP_06440659.1| chemotaxis protein CheV [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289502949|gb|EFD24113.1| chemotaxis protein CheV [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 307
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL+ITD MP M G L KKIK + FR+IP ++ SS
Sbjct: 226 DLVITDIEMPKMDGLTLTKKIK-EDERFRQIPVIVFSS 262
>gi|289548281|ref|YP_003473269.1| response regulator receiver protein [Thermocrinis albus DSM
14484]
gi|289181898|gb|ADC89142.1| response regulator receiver protein [Thermocrinis albus DSM
14484]
Length = 129
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILARI 80
+ DL++ D+ MP M G EL+K I+ + R IP ++I++ EN+LA I
Sbjct: 50 SYDLVLLDWNMPEMDGLELLKAIRADD-SLRHIPVIMITAEAKKENVLAAI 99
>gi|255693555|ref|ZP_05417230.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260620620|gb|EEX43491.1| response regulator receiver domain protein [Bacteroides finegoldii
DSM 17565]
Length = 1355
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+VDLII+D MPG+ G EL ++IK FT IP ++++++
Sbjct: 1140 SVDLIISDVMMPGIQGDELCRRIK-SDFTTSHIPVILLTAK 1179
>gi|420413346|ref|ZP_14912470.1| response regulator [Helicobacter pylori NQ4099]
gi|420454929|ref|ZP_14953759.1| response regulator [Helicobacter pylori Hp A-14]
gi|393029333|gb|EJB30414.1| response regulator [Helicobacter pylori NQ4099]
gi|393073279|gb|EJB74053.1| response regulator [Helicobacter pylori Hp A-14]
Length = 113
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRADE-RFKEIPIIMITTEGGKAEV 80
>gi|395761707|ref|ZP_10442376.1| chemotactic response regulator [Janthinobacterium lividum PAMC
25724]
Length = 121
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG E+ + +VDL++TD MP M G ELIK ++ + ++++P +++++E
Sbjct: 34 DGQDGL-------EKAKLQSVDLVLTDQNMPRMDGLELIKLLR-ELPNYQKVPILMLTTE 85
Query: 75 N 75
+
Sbjct: 86 S 86
>gi|386748270|ref|YP_006221478.1| response regulator [Helicobacter cetorum MIT 99-5656]
gi|386749382|ref|YP_006222589.1| response regulator [Helicobacter cetorum MIT 00-7128]
gi|384554512|gb|AFI06268.1| response regulator [Helicobacter cetorum MIT 99-5656]
gi|384555625|gb|AFI03959.1| response regulator [Helicobacter cetorum MIT 00-7128]
Length = 124
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ F+EIP ++I++E A +
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRADD-RFKEIPIIMITTEGGKAEV 91
>gi|331006361|ref|ZP_08329671.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [gamma proteobacterium
IMCC1989]
gi|330419821|gb|EGG94177.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [gamma proteobacterium
IMCC1989]
Length = 126
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL+K+++ +PT+++++E
Sbjct: 51 DFLVTDWNMPGMTGIELLKEVRADD-KLASLPTLMVTAE 88
>gi|27377289|ref|NP_768818.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 110]
gi|27350432|dbj|BAC47443.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 110]
Length = 560
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQ 59
LA DL+ITD+ MPGMTG EL ++++ Q
Sbjct: 484 LAADLLITDHAMPGMTGIELAREVRRQ 510
>gi|384221341|ref|YP_005612507.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 6]
gi|354960240|dbj|BAL12919.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 6]
Length = 560
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQ 59
LA DL+ITD+ MPGMTG EL ++++ Q
Sbjct: 484 LAADLLITDHAMPGMTGIELAREVRRQ 510
>gi|307721649|ref|YP_003892789.1| response regulator receiver protein [Sulfurimonas autotrophica
DSM 16294]
gi|306979742|gb|ADN09777.1| response regulator receiver protein [Sulfurimonas autotrophica
DSM 16294]
Length = 124
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 13/70 (18%)
Query: 14 SDGSDGF---DLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
+DG +G+ D +P ++++ITD+ MP M G EL+KK++ F++ P ++
Sbjct: 32 ADGVEGWAQMDANPD---------IEMLITDWNMPEMNGLELVKKVRADE-RFKDTPIIM 81
Query: 71 ISSENILARI 80
+++E A +
Sbjct: 82 VTTEGGKAEV 91
>gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator
[Ralstonia solanacearum PSI07]
gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator
[Ralstonia solanacearum PSI07]
Length = 201
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A DL++ D MPGMTG EL+++I + F EIP V +++
Sbjct: 49 APDLVLCDVGMPGMTGFELLERIGALAPRFAEIPFVFLTA 88
>gi|152997430|ref|YP_001342265.1| response regulator receiver protein [Marinomonas sp. MWYL1]
gi|150838354|gb|ABR72330.1| response regulator receiver protein [Marinomonas sp. MWYL1]
Length = 126
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGMTG EL++ ++ + IP +++++E
Sbjct: 46 IDFLVTDWNMPGMTGIELLRAVRADE-KLKSIPVLMVTAE 84
>gi|389796056|ref|ZP_10199112.1| response regulator receiver protein [Rhodanobacter sp. 116-2]
gi|388448696|gb|EIM04676.1| response regulator receiver protein [Rhodanobacter sp. 116-2]
Length = 135
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL++TD+ MP MTG +L++ I+ + + +P +++++EN
Sbjct: 53 DLVVTDWNMPNMTGIDLLRAIRAEE-ALKGLPVLMVTAEN 91
>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
Length = 1046
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
DL+ITD+ MP M+G EL ++I+ + ++ E+P +++++ ++
Sbjct: 759 DLVITDWMMPEMSGIELCRRIR-EGYSLSELPVLLLTARDL 798
>gi|298529775|ref|ZP_07017178.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511211|gb|EFI35114.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 122
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
VDLIITD MP M G ++ ++ Q FR++P +I+S+E
Sbjct: 48 VDLIITDINMPRMDGFTFVQNLREQE-AFRDVPVIILSTE 86
>gi|114566980|ref|YP_754134.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337915|gb|ABI68763.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 124
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG+D + + E +D+++TD MP M G I++++ + + EIP +IIS+E
Sbjct: 35 DGADALEKIYSSEE-----PIDMVVTDINMPNMDGYTFIERLR-EDEQYEEIPIIIISTE 88
Query: 75 NILARIDR 82
+ L ++R
Sbjct: 89 DELKDMER 96
>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
punctiforme PCC 73102]
Length = 227
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ Q+ FR +P +++++
Sbjct: 48 DLIVTDIIMPQMNGYELVRRVRQQAM-FRLLPVILLTA 84
>gi|319787082|ref|YP_004146557.1| response regulator receiver protein [Pseudoxanthomonas suwonensis
11-1]
gi|317465594|gb|ADV27326.1| response regulator receiver protein [Pseudoxanthomonas suwonensis
11-1]
Length = 126
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL++ I+ + + +P +++++E
Sbjct: 47 DFVVTDWNMPGMTGIELLRNIRADA-RLKTLPVLMVTAE 84
>gi|304311118|ref|YP_003810716.1| chemotaxis protein CheY [gamma proteobacterium HdN1]
gi|301796851|emb|CBL45063.1| Chemotaxis protein CheY [gamma proteobacterium HdN1]
Length = 123
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL+K ++ R +P +++++E
Sbjct: 47 DFLVTDWNMPGMTGIELLKAVRSDD-KLRSLPVLMVTAE 84
>gi|373458796|ref|ZP_09550563.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
gi|371720460|gb|EHO42231.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
Length = 126
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+ +G D E++H DL++TD+ MP M G EL+++++ + F+E+P ++I++
Sbjct: 33 EEAQNGLDA----LEKLHEAPFDLLVTDWNMPEMNGKELVEEVR-KLPRFKELPIMMITT 87
>gi|352081517|ref|ZP_08952359.1| response regulator receiver protein [Rhodanobacter sp. 2APBS1]
gi|351682423|gb|EHA65519.1| response regulator receiver protein [Rhodanobacter sp. 2APBS1]
Length = 131
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL++TD+ MP MTG +L++ I+ + + +P +++++EN
Sbjct: 49 DLVVTDWNMPNMTGIDLLRAIRAEE-ALKGLPVLMVTAEN 87
>gi|333907213|ref|YP_004480799.1| response regulator receiver protein [Marinomonas posidonica
IVIA-Po-181]
gi|333477219|gb|AEF53880.1| response regulator receiver protein [Marinomonas posidonica
IVIA-Po-181]
Length = 126
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGMTG EL++ ++ + IP +++++E
Sbjct: 46 IDFLVTDWNMPGMTGIELLRAVRADE-KLKSIPVLMVTAE 84
>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
gi|429092501|ref|ZP_19155129.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter dublinensis 1210]
gi|429102303|ref|ZP_19164277.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter turicensis 564]
gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
[Cronobacter turicensis z3032]
gi|426288952|emb|CCJ90390.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter turicensis 564]
gi|426742700|emb|CCJ81242.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter dublinensis 1210]
Length = 229
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK IK ++ T REIP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHIKREALT-REIPVVMLTA 84
>gi|254457285|ref|ZP_05070713.1| response regulator receiver domain protein [Sulfurimonas
gotlandica GD1]
gi|373868059|ref|ZP_09604457.1| response regulator receiver protein [Sulfurimonas gotlandica GD1]
gi|207086077|gb|EDZ63361.1| response regulator receiver domain protein [Sulfurimonas
gotlandica GD1]
gi|372470160|gb|EHP30364.1| response regulator receiver protein [Sulfurimonas gotlandica GD1]
Length = 124
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++++ITD+ MP M G EL+KK++ + F++ P +++++E A +
Sbjct: 47 IEMLITDWNMPEMNGLELVKKVRADA-RFKDTPIIMVTTEGGKAEV 91
>gi|357407163|ref|YP_004919087.1| chemotaxis protein CheY [Methylomicrobium alcaliphilum 20Z]
gi|351719828|emb|CCE25504.1| Chemotaxis protein CheY/response regulator receiver domain protein
[Methylomicrobium alcaliphilum 20Z]
Length = 267
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKL-QSFTFREIPTVIISSENILARIDR 82
A DLI+TDY MP M G ELI I+ + TF IP ++++SE+ R+D+
Sbjct: 191 AFDLIVTDYNMPEMDGRELISHIRNDRQNTF--IPILMVTSESNETRLDQ 238
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
DLII+ +P MT E+I KIK ++P ++ISSE + +D
Sbjct: 55 DLIISSMYLPDMTAAEMIVKIKANE-ELNDVPFMLISSETRFSALD 99
>gi|313142237|ref|ZP_07804430.1| response regulator [Helicobacter canadensis MIT 98-5491]
gi|313131268|gb|EFR48885.1| response regulator [Helicobacter canadensis MIT 98-5491]
Length = 124
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+G +G+D + + V ++ITD+ MP M G +L+KK++ F++IP +++++
Sbjct: 32 ENGVEGWDQMNANPD------VKVLITDWNMPEMNGLDLVKKVRADE-RFKDIPIIMVTT 84
Query: 74 ENILARI 80
E A +
Sbjct: 85 EGGKAEV 91
>gi|153872625|ref|ZP_02001462.1| two-component response regulator [Beggiatoa sp. PS]
gi|152070907|gb|EDN68536.1| two-component response regulator [Beggiatoa sp. PS]
Length = 221
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG +G E VH + DLIITD MP M G E ++++ + F+++P + S+
Sbjct: 27 ADGQEGL-------ESVHKTSPDLIITDLVMPSMDGFEFARQVR-KCMEFQQLPIIAASA 78
>gi|386827283|ref|ZP_10114390.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Beggiatoa alba B18LD]
gi|386428167|gb|EIJ41995.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Beggiatoa alba B18LD]
Length = 1322
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D MP MTG E+ KK++ + + E+P +IIS++N
Sbjct: 749 DLILLDIMMPKMTGYEVCKKVRAR-YNANELPIIIISAKN 787
>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family
[beta proteobacterium KB13]
gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family
[beta proteobacterium KB13]
Length = 233
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
VDLI+ D+ +PGM G + +K+I+ S T EIP ++++++N
Sbjct: 48 VDLILLDWMLPGMDGIDFLKRIRTNSNT-NEIPVMMLTAKN 87
>gi|23015107|ref|ZP_00054894.1| COG3437: Response regulator containing a CheY-like receiver
domain and an HD-GYP domain [Magnetospirillum
magnetotacticum MS-1]
Length = 339
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
D+I+TDY MPGM G + I++++ Q +++P V++++ ++
Sbjct: 47 DIILTDYMMPGMDGLDFIRQVR-QRDAMQDVPVVVVTTSDV 86
>gi|429085318|ref|ZP_19148294.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter condimenti 1330]
gi|426545439|emb|CCJ74335.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter condimenti 1330]
Length = 229
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK IK ++ T REIP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHIKREALT-REIPVVMLTA 84
>gi|429099202|ref|ZP_19161308.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter dublinensis 582]
gi|426285542|emb|CCJ87421.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter dublinensis 582]
Length = 229
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK IK ++ T REIP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHIKREALT-REIPVVMLTA 84
>gi|355679918|ref|ZP_09061549.1| hypothetical protein HMPREF9469_04586 [Clostridium citroniae
WAL-17108]
gi|354812039|gb|EHE96661.1| hypothetical protein HMPREF9469_04586 [Clostridium citroniae
WAL-17108]
Length = 798
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
T H D +I D+ MPGM G E +KKI+ Q R++P +I+S+
Sbjct: 575 TAHRHNRDFDAVIADWKMPGMDGLETMKKIREQ--VSRDVPVLIVSA 619
>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM
13275]
gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM
13275]
Length = 232
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 18 DGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
DGFD EE DLI+ D+ +P ++G E++KKI+ Q ++IP ++++++N+
Sbjct: 37 DGFDGFIKAKEE----KPDLILLDWMLPNISGIEVLKKIR-QDADLKKIPVIMLTAKNM 90
>gi|392555084|ref|ZP_10302221.1| response regulator receiver domain-containing protein
[Pseudoalteromonas undina NCIMB 2128]
Length = 265
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+TDY MP M G EL + ++ +S + IP +++SSE
Sbjct: 192 DLIVTDYNMPEMDGKELTETVR-KSNAYSHIPVLMVSSE 229
>gi|313683102|ref|YP_004060840.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
16994]
gi|313155962|gb|ADR34640.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
16994]
Length = 124
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG G+++ + + ++++ITD+ MP M G EL+KK++ S F ++P +++++
Sbjct: 32 EDGLQGWNILNQNPD------INMLITDWNMPEMNGLELVKKVRADS-RFIDLPIIMVTT 84
Query: 74 E 74
E
Sbjct: 85 E 85
>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
Length = 1039
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 5/53 (9%)
Query: 28 EEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
E +H+L DL+ITD+ MP M+G EL ++I+ + ++ E+P +++++ ++
Sbjct: 739 EALHMLNGRTRFDLVITDWMMPEMSGIELCRRIR-ERYSLSELPVLLLTARDL 790
>gi|302343447|ref|YP_003807976.1| response regulator receiver protein [Desulfarculus baarsii DSM
2075]
gi|301640060|gb|ADK85382.1| response regulator receiver protein [Desulfarculus baarsii DSM
2075]
Length = 121
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DGF+ +++ VDLII+D MP M G IKKI+ Q+ + IP +++S+E
Sbjct: 32 AGDGFE----GLQQLAAHRVDLIISDLNMPRMDGLSFIKKIR-QNDSTSAIPVILLSTEK 86
Query: 76 ILARID 81
ID
Sbjct: 87 ASRDID 92
>gi|253826752|ref|ZP_04869637.1| response regulator [Helicobacter canadensis MIT 98-5491]
gi|253510158|gb|EES88817.1| response regulator [Helicobacter canadensis MIT 98-5491]
Length = 122
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+G +G+D + + V ++ITD+ MP M G +L+KK++ F++IP +++++
Sbjct: 30 ENGVEGWDQMNANPD------VKVLITDWNMPEMNGLDLVKKVRADE-RFKDIPIIMVTT 82
Query: 74 ENILARI 80
E A +
Sbjct: 83 EGGKAEV 89
>gi|413960032|ref|ZP_11399263.1| response regulator receiver protein [Burkholderia sp. SJ98]
gi|413939982|gb|EKS71950.1| response regulator receiver protein [Burkholderia sp. SJ98]
Length = 144
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
E + L +I+TD+ MPGM G E K+++ + FR +P +++S E
Sbjct: 39 EIIRSLCPHVIVTDWQMPGMDGVEFCKELR-KRVVFRRVPIILLSGER 85
>gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT
12056]
gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT
12056]
Length = 1362
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ +G D DLS DLI++D MPGM G EL ++K Q IP ++++
Sbjct: 1135 VGNGKDALDLSLEKYP-------DLILSDIMMPGMDGLELCSRVK-QDLQLGHIPVILMT 1186
Query: 73 SENILARI 80
+++++ I
Sbjct: 1187 AKSMVVHI 1194
>gi|443318927|ref|ZP_21048168.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442781461|gb|ELR91560.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 1123
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E H +LI+TD MPGM+G ELI++++ Q R +P V+++++
Sbjct: 808 EMAHSQPPNLILTDLMMPGMSGLELIQQVR-QDERLRTVPVVLLTAK 853
>gi|251794854|ref|YP_003009585.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2]
gi|247542480|gb|ACS99498.1| two component transcriptional regulator, AraC family
[Paenibacillus sp. JDR-2]
Length = 541
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIK 57
+H A+D++ITD MPGMTG ELI++IK
Sbjct: 44 LHEHAIDVVITDIRMPGMTGLELIQEIK 71
>gi|329954663|ref|ZP_08295723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328527204|gb|EGF54208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1346
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L DG DG TE+ D+I++D MP MTG E K+IK F IP V++
Sbjct: 1117 LAVDGEDG-------TEKAREFCPDIILSDIVMPKMTGTEFCKQIK-TDFATCHIPVVLL 1168
Query: 72 SS 73
++
Sbjct: 1169 TA 1170
>gi|78355431|ref|YP_386880.1| response regulator receiver protein [Desulfovibrio alaskensis
G20]
gi|78217836|gb|ABB37185.1| response regulator receiver protein [Desulfovibrio alaskensis
G20]
Length = 126
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG+ +D+ D +D II+D+ MP MTG +L++K++ S F ++P +++++E
Sbjct: 39 DGTTAWDVLNKDK-------IDFIISDWNMPQMTGIDLLRKVR-SSEEFADLPFLMVTAE 90
>gi|420433563|ref|ZP_14932571.1| response regulator [Helicobacter pylori Hp H-24]
gi|420481961|ref|ZP_14980598.1| hypothetical protein HPHPP2_0486 [Helicobacter pylori Hp P-2]
gi|420507318|ref|ZP_15005831.1| hypothetical protein HPHPH24B_0487 [Helicobacter pylori Hp H-24b]
gi|420509006|ref|ZP_15007508.1| hypothetical protein HPHPH24C_0476 [Helicobacter pylori Hp H-24c]
gi|420512385|ref|ZP_15010868.1| hypothetical protein HPHPP2B_0491 [Helicobacter pylori Hp P-2b]
gi|420532754|ref|ZP_15031117.1| response regulator [Helicobacter pylori Hp M1]
gi|420534318|ref|ZP_15032669.1| response regulator [Helicobacter pylori Hp M2]
gi|420536123|ref|ZP_15034465.1| response regulator [Helicobacter pylori Hp M3]
gi|420537829|ref|ZP_15036159.1| response regulator [Helicobacter pylori Hp M4]
gi|420539550|ref|ZP_15037869.1| response regulator [Helicobacter pylori Hp M5]
gi|420541313|ref|ZP_15039621.1| response regulator [Helicobacter pylori Hp M6]
gi|420542835|ref|ZP_15041130.1| response regulator [Helicobacter pylori Hp M9]
gi|393051091|gb|EJB52044.1| response regulator [Helicobacter pylori Hp H-24]
gi|393099195|gb|EJB99776.1| hypothetical protein HPHPP2_0486 [Helicobacter pylori Hp P-2]
gi|393119399|gb|EJC19890.1| hypothetical protein HPHPH24B_0487 [Helicobacter pylori Hp H-24b]
gi|393120432|gb|EJC20921.1| hypothetical protein HPHPH24C_0476 [Helicobacter pylori Hp H-24c]
gi|393140385|gb|EJC40758.1| response regulator [Helicobacter pylori Hp M1]
gi|393142541|gb|EJC42895.1| response regulator [Helicobacter pylori Hp M2]
gi|393143771|gb|EJC44115.1| response regulator [Helicobacter pylori Hp M3]
gi|393145384|gb|EJC45715.1| response regulator [Helicobacter pylori Hp M4]
gi|393147235|gb|EJC47560.1| response regulator [Helicobacter pylori Hp M5]
gi|393147933|gb|EJC48257.1| response regulator [Helicobacter pylori Hp M6]
gi|393157448|gb|EJC57709.1| hypothetical protein HPHPP2B_0491 [Helicobacter pylori Hp P-2b]
gi|393159898|gb|EJC60147.1| response regulator [Helicobacter pylori Hp M9]
Length = 113
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ + F+EIP ++I++E A +
Sbjct: 38 VLITDWNMPEMNGLDLVKKVRSDN-RFKEIPIIMITTEGGKAEV 80
>gi|389775387|ref|ZP_10193353.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodanobacter spathiphylli B39]
gi|388437428|gb|EIL94229.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodanobacter spathiphylli B39]
Length = 229
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D+ +PGM+G EL ++++ + + REIP +++++
Sbjct: 48 DLILLDWMLPGMSGLELARRLRKEELS-REIPIIMLTARG 86
>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC
BAA-894]
gi|389841987|ref|YP_006344071.1| transcriptional regulator PhoB [Cronobacter sakazakii ES15]
gi|417792035|ref|ZP_12439447.1| transcriptional regulator PhoB [Cronobacter sakazakii E899]
gi|424798371|ref|ZP_18223913.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter sakazakii 696]
gi|429107622|ref|ZP_19169491.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter malonaticus 681]
gi|429109202|ref|ZP_19170972.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter malonaticus 507]
gi|429114348|ref|ZP_19175266.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter sakazakii 701]
gi|429122531|ref|ZP_19183108.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter sakazakii 680]
gi|449309277|ref|YP_007441633.1| transcriptional regulator PhoB [Cronobacter sakazakii SP291]
gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC
BAA-894]
gi|333953923|gb|EGL71813.1| transcriptional regulator PhoB [Cronobacter sakazakii E899]
gi|387852463|gb|AFK00561.1| transcriptional regulator PhoB [Cronobacter sakazakii ES15]
gi|423234092|emb|CCK05783.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter sakazakii 696]
gi|426294345|emb|CCJ95604.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter malonaticus 681]
gi|426310359|emb|CCJ97085.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter malonaticus 507]
gi|426317477|emb|CCK01379.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter sakazakii 701]
gi|426322999|emb|CCK13845.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter sakazakii 680]
gi|449099310|gb|AGE87344.1| transcriptional regulator PhoB [Cronobacter sakazakii SP291]
Length = 229
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK IK ++ T REIP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHIKREALT-REIPVVMLTA 84
>gi|429089020|ref|ZP_19151752.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter universalis NCTC 9529]
gi|426508823|emb|CCK16864.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Cronobacter universalis NCTC 9529]
Length = 229
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK IK ++ T REIP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHIKREALT-REIPVVMLTA 84
>gi|407000630|gb|EKE17866.1| hypothetical protein ACD_10C00235G0002 [uncultured bacterium]
Length = 121
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKI-KLQSFTFREIPTVIISSENILAR 79
+ +DL+ITD MPG+ G ELI+++ KL ++ F +P + +++E+ AR
Sbjct: 45 IKIDLLITDLNMPGINGIELIREVRKLPAYKF--VPILFLTTESQQAR 90
>gi|344176190|emb|CCA87357.1| two component heavy metal response transcriptional regulator
[Ralstonia syzygii R24]
Length = 201
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A DL++ D MPGMTG EL+++I + F EIP V +++
Sbjct: 49 APDLVLCDVGMPGMTGFELLERIGALAPRFAEIPFVFLTA 88
>gi|330836602|ref|YP_004411243.1| Fis family transcriptional regulator [Sphaerochaeta coccoides DSM
17374]
gi|329748505|gb|AEC01861.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Sphaerochaeta coccoides DSM 17374]
Length = 453
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 10/61 (16%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG++ ++L + T VDL+I+D MPG++G EL+KKI S + +P VI+
Sbjct: 31 LAADGTEAWNLINSQT-------VDLVISDLRMPGLSGEELLKKI---SGAYPRLPVVIL 80
Query: 72 S 72
+
Sbjct: 81 T 81
>gi|332982354|ref|YP_004463795.1| AraC family transcriptional regulator [Mahella australiensis 50-1
BON]
gi|332700032|gb|AEE96973.1| two component transcriptional regulator, AraC family [Mahella
australiensis 50-1 BON]
Length = 555
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIK 57
++D+++TD CMPGMTG EL K+IK
Sbjct: 48 SIDIVLTDICMPGMTGLELQKRIK 71
>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter denitrificans OCh 114]
gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter denitrificans OCh 114]
Length = 229
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 17 SDGFDLSPTDT-EEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
++GF +S + EE +L A DLI+ D+ MP ++G E+ +++K +S T R IP +++
Sbjct: 27 AEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEVCRRLKTRSET-RAIPIIML 85
Query: 72 SSEN 75
S+ +
Sbjct: 86 SARS 89
>gi|256830619|ref|YP_003159347.1| response regulator receiver protein [Desulfomicrobium baculatum
DSM 4028]
gi|256579795|gb|ACU90931.1| response regulator receiver protein [Desulfomicrobium baculatum
DSM 4028]
Length = 137
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+L++ D+ MP MTG EL+++I+ F +IP + I++E
Sbjct: 51 ELLLLDWSMPRMTGLELLQRIRASEREFADIPVLAITAE 89
>gi|410637604|ref|ZP_11348178.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola lipolytica E3]
gi|410142797|dbj|GAC15383.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola lipolytica E3]
Length = 229
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G +L KK+K FT R+IP +++++
Sbjct: 48 DLILLDWMLPGGSGVQLAKKLKQHEFT-RDIPIIMLTA 84
>gi|389792938|ref|ZP_10196119.1| response regulator receiver protein [Rhodanobacter fulvus Jip2]
gi|388435469|gb|EIL92372.1| response regulator receiver protein [Rhodanobacter fulvus Jip2]
Length = 135
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL++TD+ MP MTG +L++ I+ + + +P +++++EN
Sbjct: 53 DLVVTDWNMPNMTGIDLLRAIRAEP-ALKGLPVLMVTAEN 91
>gi|256838766|ref|ZP_05544276.1| two-component system sensor histidine kinase/response regulator
[Parabacteroides sp. D13]
gi|256739685|gb|EEU53009.1| two-component system sensor histidine kinase/response regulator
[Parabacteroides sp. D13]
Length = 1314
Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
LIITD MP M G ELI IK +T R IP +IIS++
Sbjct: 1108 LIITDIMMPNMDGLELISLIKENKYT-RHIPLIIISAK 1144
>gi|146301560|ref|YP_001196151.1| response regulator receiver protein [Flavobacterium johnsoniae
UW101]
gi|146155978|gb|ABQ06832.1| response regulator receiver protein [Flavobacterium johnsoniae
UW101]
Length = 151
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
DLI+ D MP M G EL+K IK Q F EIP V++++ + + ID
Sbjct: 53 DLILLDAGMPKMNGWELLKLIK-QDLRFGEIPVVMMATSSRMKGID 97
>gi|124002338|ref|ZP_01687191.1| response regulator receiver [Microscilla marina ATCC 23134]
gi|123992167|gb|EAY31535.1| response regulator receiver [Microscilla marina ATCC 23134]
Length = 297
Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 9 LSRLMSDGSDGFDLSPTDTEEV-----HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTF 63
++R + + S+ +DL ++ L DLIITD+ MP M G +L + +K T
Sbjct: 24 MTRYLEEASESYDLLTASNGKIAYNVAQKLLPDLIITDWDMPQMNGLQLTQALKQTPLT- 82
Query: 64 REIPTVII-----SSENILARID 81
++IP ++I ++EN+ A +D
Sbjct: 83 KDIPILLITGVYTTTENLKAALD 105
>gi|410996662|gb|AFV98127.1| response regulator receiver protein [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 124
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ ++ITD+ MP M G EL+KK++ S F ++P +++++E A +
Sbjct: 47 IGMLITDWNMPEMNGLELVKKVRADS-RFADLPIIMVTTEGGKAEV 91
>gi|383791541|ref|YP_005476115.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Spirochaeta africana
DSM 8902]
gi|383108075|gb|AFG38408.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Spirochaeta africana
DSM 8902]
Length = 124
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 9/62 (14%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+GS+G L+ D + DL+ITDY MP M G E+I++I+ S +P +++++
Sbjct: 33 SEGSEG--LAALDN------SFDLVITDYNMPNMNGAEVIRRIRGGS-AHPAVPVLMVTT 83
Query: 74 EN 75
E+
Sbjct: 84 ES 85
>gi|307731387|ref|YP_003908611.1| response regulator receiver protein [Burkholderia sp. CCGE1003]
gi|307585922|gb|ADN59320.1| response regulator receiver protein [Burkholderia sp. CCGE1003]
Length = 125
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG++G E + DL++TD MPG TG +LI +++ + ++E P +++
Sbjct: 31 LAADGAEGL-------ENALAMRFDLVLTDQHMPGKTGLDLIAELR-GNPAYKETPILVL 82
Query: 72 SSEN 75
++E+
Sbjct: 83 TTES 86
>gi|344171228|emb|CCA83705.1| two component heavy metal response transcriptional regulator
[blood disease bacterium R229]
Length = 201
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A DL++ D MPGMTG EL+++I + F EIP V +++
Sbjct: 49 APDLVLCDVGMPGMTGFELLERIGTLAPRFAEIPFVFLTA 88
>gi|315636318|ref|ZP_07891568.1| chemotaxis response regulator CheY [Arcobacter butzleri JV22]
gi|384156488|ref|YP_005539303.1| chemotaxis protein CheY [Arcobacter butzleri ED-1]
gi|315479407|gb|EFU70090.1| chemotaxis response regulator CheY [Arcobacter butzleri JV22]
gi|345470042|dbj|BAK71493.1| chemotaxis protein CheY [Arcobacter butzleri ED-1]
Length = 123
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+I+TD+ MP M G EL+K+++ + T ++ P ++I++E
Sbjct: 49 DVILTDWNMPNMNGLELVKRVRAEG-THQKTPIIMITTE 86
>gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B]
gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B]
Length = 218
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 10 SRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
S+ + DG + F+L ++ DLI+ D +PGM G EL+KKIK + IP +
Sbjct: 29 SKQLFDGLEAFNLLKEES-------FDLILMDIMLPGMDGFELMKKIKDLN-----IPVI 76
Query: 70 IISSENILA 78
++++N LA
Sbjct: 77 FLTAKNGLA 85
>gi|427707198|ref|YP_007049575.1| response regulator receiver protein [Nostoc sp. PCC 7107]
gi|427359703|gb|AFY42425.1| response regulator receiver protein [Nostoc sp. PCC 7107]
Length = 125
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D I+TD MPGM+G EL + +K T +++P VI SS+N+ IDR
Sbjct: 52 DAIVTDVVMPGMSGFELCRSLKKNPAT-QKLPIVICSSKNL--EIDR 95
>gi|404450813|ref|ZP_11015791.1| two-component system sensor histidine kinase/response regulator
hybrid [Indibacter alkaliphilus LW1]
gi|403763593|gb|EJZ24541.1| two-component system sensor histidine kinase/response regulator
hybrid [Indibacter alkaliphilus LW1]
Length = 1342
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
E + + VDLII+D MP M G EL K++K Q F IP ++++++ L
Sbjct: 1129 ETLDKVQVDLIISDIMMPVMDGIELCKEVKSQ-IEFSHIPIILLTAKTTL 1177
>gi|288573491|ref|ZP_06391848.1| CheA signal transduction histidine kinase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288569232|gb|EFC90789.1| CheA signal transduction histidine kinase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 717
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG +GFDL ++ D++++D MPGM G EL + I+ + E+P V+++S
Sbjct: 630 DGREGFDLFSRES-------FDIVVSDVEMPGMNGFELTRAIRSHG-SKGEVPVVLVTS- 680
Query: 75 NILARIDR 82
+ +R DR
Sbjct: 681 -LDSRKDR 687
>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium IMCC1989]
gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium IMCC1989]
Length = 233
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREI 66
R+ + +D L DT+ H L +D LI+ D+ +PG +G +L +++K FT +I
Sbjct: 21 RVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSGIDLARRLKKDEFTA-DI 79
Query: 67 PTVIISSE 74
P ++++++
Sbjct: 80 PIIMLTAK 87
>gi|427385148|ref|ZP_18881653.1| hypothetical protein HMPREF9447_02686 [Bacteroides oleiciplenus YIT
12058]
gi|425727316|gb|EKU90176.1| hypothetical protein HMPREF9447_02686 [Bacteroides oleiciplenus YIT
12058]
Length = 1422
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG+ GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1200 ADGTLGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1251
>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
variabilis ATCC 29413]
gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
variabilis ATCC 29413]
Length = 245
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
V V DLI+TD MP M G EL+++++ Q FR +P +++++
Sbjct: 60 VEVYHPDLIVTDIVMPRMNGYELVRRVRQQP-PFRLLPVILLTA 102
>gi|336404087|ref|ZP_08584786.1| hypothetical protein HMPREF0127_02099 [Bacteroides sp. 1_1_30]
gi|335943738|gb|EGN05573.1| hypothetical protein HMPREF0127_02099 [Bacteroides sp. 1_1_30]
Length = 1536
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG +G E H +DLII+D MPG G E+ +K+K F+ IP +++++
Sbjct: 1305 ADGKNGL-------EYAHNNDIDLIISDVMMPGYNGFEITRKLK-SDFSTSHIPIILLTA 1356
Query: 74 EN 75
N
Sbjct: 1357 LN 1358
>gi|303248005|ref|ZP_07334271.1| response regulator receiver protein [Desulfovibrio fructosovorans
JJ]
gi|302490562|gb|EFL50467.1| response regulator receiver protein [Desulfovibrio fructosovorans
JJ]
Length = 127
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DGS ++ D VD II+D+ MP M G EL++K++ S F E P +++++E
Sbjct: 39 DGSTAWETLNKDK-------VDFIISDWNMPKMPGIELLRKVR-SSEEFAETPFLMVTAE 90
>gi|219852083|ref|YP_002466515.1| response regulator receiver protein [Methanosphaerula palustris
E1-9c]
gi|219546342|gb|ACL16792.1| response regulator receiver protein [Methanosphaerula palustris
E1-9c]
Length = 268
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 4/42 (9%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
+ D+I++DY MPGM G EL++KI++ S +IP ++ + +
Sbjct: 48 SYDIIVSDYQMPGMNGIELLRKIRMNS----DIPFILFTGRS 85
>gi|402700521|ref|ZP_10848500.1| protein CheY [Pseudomonas fragi A22]
Length = 127
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGMTG EL++ ++ + +P +++++E
Sbjct: 50 IDFLVTDWNMPGMTGIELLRHVRADE-KLKHLPVLMVTAE 88
>gi|345508648|ref|ZP_08788274.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|345455056|gb|EEO51468.2| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1536
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG +G E H +DLII+D MPG G E+ +K+K F+ IP +++++
Sbjct: 1305 ADGKNGL-------EYAHNNDIDLIISDVMMPGYNGFEITRKLK-SDFSTSHIPIILLTA 1356
Query: 74 EN 75
N
Sbjct: 1357 LN 1358
>gi|333377609|ref|ZP_08469343.1| hypothetical protein HMPREF9456_00938 [Dysgonomonas mossii DSM
22836]
gi|332884343|gb|EGK04611.1| hypothetical protein HMPREF9456_00938 [Dysgonomonas mossii DSM
22836]
Length = 1015
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+LIITD MP ++G ELI +IK T R IP VIIS++
Sbjct: 809 ELIITDIMMPEVSGLELINQIKSDKIT-RHIPLVIISAK 846
>gi|89893285|ref|YP_516772.1| hypothetical protein DSY0539 [Desulfitobacterium hafniense Y51]
gi|89332733|dbj|BAE82328.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1022
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
L++TD MPGM+G EL ++I+ Q+++ E+P +I ++ N
Sbjct: 739 LLLTDLMMPGMSGIELTQQIR-QNYSLIELPIIIATARN 776
>gi|357470051|ref|XP_003605310.1| hypothetical protein MTR_4g028380 [Medicago truncatula]
gi|355506365|gb|AES87507.1| hypothetical protein MTR_4g028380 [Medicago truncatula]
Length = 197
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQ 59
+ GSDG P +V +L+ITD+CMPGM EL+KKIK+
Sbjct: 47 VKSGSDGGTSEPLTGSKV-----NLVITDHCMPGMRDYELLKKIKVS 88
>gi|291286123|ref|YP_003502939.1| response regulator receiver protein [Denitrovibrio acetiphilus
DSM 12809]
gi|290883283|gb|ADD66983.1| response regulator receiver protein [Denitrovibrio acetiphilus
DSM 12809]
Length = 121
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG D + ++T VD+++TD MP M G LIK+++ Q F+ IP +++++
Sbjct: 33 SDGKDALTKAGSNT-------VDMVVTDLNMPNMDGITLIKELRAQP-KFKFIPIIMLTT 84
Query: 74 EN 75
E+
Sbjct: 85 ES 86
>gi|219666561|ref|YP_002456996.1| signal transduction histidine kinase LytS [Desulfitobacterium
hafniense DCB-2]
gi|219536821|gb|ACL18560.1| signal transduction histidine kinase, LytS [Desulfitobacterium
hafniense DCB-2]
Length = 1022
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
L++TD MPGM+G EL ++I+ Q+++ E+P +I ++ N
Sbjct: 739 LLLTDLMMPGMSGIELTQQIR-QNYSLIELPIIIATARN 776
>gi|359443241|ref|ZP_09233085.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20429]
gi|358034925|dbj|GAA69334.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20429]
Length = 265
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E ++ + DLI+TDY MP M G EL + ++ S ++ IP +++SSE
Sbjct: 184 EHLNNQSFDLIVTDYNMPEMDGRELTEAVR-SSNSYSHIPILMVSSE 229
>gi|158334093|ref|YP_001515265.1| response regulator receiver [Acaryochloris marina MBIC11017]
gi|359460259|ref|ZP_09248822.1| response regulator receiver [Acaryochloris sp. CCMEE 5410]
gi|158304334|gb|ABW25951.1| response regulator receiver, putative [Acaryochloris marina
MBIC11017]
Length = 119
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL++TD MPGM+G EL + +K T +++P VI +S+N
Sbjct: 47 DLVVTDVVMPGMSGFELCRSLKKNEAT-QQLPVVICTSKN 85
>gi|293369340|ref|ZP_06615925.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|299148484|ref|ZP_07041546.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|292635507|gb|EFF54014.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|298513245|gb|EFI37132.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1452
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG +G E H +DLII+D MPG G E+ +K+K F+ IP +++++
Sbjct: 1221 ADGKNGL-------EYAHNNDIDLIISDVMMPGYNGFEITRKLK-SDFSTSHIPIILLTA 1272
Query: 74 EN 75
N
Sbjct: 1273 LN 1274
>gi|237721256|ref|ZP_04551737.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|262408437|ref|ZP_06084984.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294643088|ref|ZP_06720922.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294808964|ref|ZP_06767688.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|229449052|gb|EEO54843.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|262353989|gb|EEZ03082.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|292641547|gb|EFF59731.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294443845|gb|EFG12588.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|295086733|emb|CBK68256.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1452
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG +G E H +DLII+D MPG G E+ +K+K F+ IP +++++
Sbjct: 1221 ADGKNGL-------EYAHNNDIDLIISDVMMPGYNGFEITRKLK-SDFSTSHIPIILLTA 1272
Query: 74 EN 75
N
Sbjct: 1273 LN 1274
>gi|197118763|ref|YP_002139190.1| chemotaxis sensor histidine kinase CheA/response receiver
[Geobacter bemidjiensis Bem]
gi|197088123|gb|ACH39394.1| sensor histidine kinase CheA and response receiver CheY associated
with MCPs of class 40H [Geobacter bemidjiensis Bem]
Length = 679
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLII+D MPG+ G EL + ++ +S +REIP +I+SS
Sbjct: 605 DLIISDVEMPGINGFELTRALR-ESERYREIPIIIVSS 641
>gi|410090071|ref|ZP_11286672.1| response regulator receiver [Pseudomonas viridiflava UASWS0038]
gi|409762707|gb|EKN47717.1| response regulator receiver [Pseudomonas viridiflava UASWS0038]
Length = 128
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGM+G +L+++++ Q + +P +++++
Sbjct: 33 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMSGIDLLRQVR-QDERLKSLPVLMVTA 87
Query: 74 E 74
E
Sbjct: 88 E 88
>gi|407474551|ref|YP_006788951.1| two-component system sensor histidine kinase [Clostridium acidurici
9a]
gi|407051059|gb|AFS79104.1| two-component system sensor histidine kinase [Clostridium acidurici
9a]
Length = 1039
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
VDLII D+ +P M+G E+ KKI+ Q +T E+P +I+++
Sbjct: 754 VDLIILDFMLPDMSGDEVCKKIR-QKYTMAELPIMILTA 791
>gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
Length = 1341
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E++ AVDLI++D MPGM G L +K+K Q T IP ++++++
Sbjct: 1128 EQLKASAVDLIVSDVMMPGMDGFALCRKLKSQLET-SHIPVIMLTAK 1173
>gi|325291389|ref|YP_004267570.1| response regulator receiver protein [Syntrophobotulus glycolicus
DSM 8271]
gi|324966790|gb|ADY57569.1| response regulator receiver protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 124
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
D I+TDY MP M GCE + K+ + +R IP VI++
Sbjct: 48 DFILTDYSMPLMNGCEFVGKV-FEDQRYRHIPIVIMT 83
>gi|301307857|ref|ZP_07213813.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 20_3]
gi|423339650|ref|ZP_17317390.1| hypothetical protein HMPREF1059_03315 [Parabacteroides distasonis
CL09T03C24]
gi|300834200|gb|EFK64814.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 20_3]
gi|409230042|gb|EKN22912.1| hypothetical protein HMPREF1059_03315 [Parabacteroides distasonis
CL09T03C24]
Length = 1346
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
LIITD MP M G ELI IK +T R IP +IIS++
Sbjct: 1140 LIITDIMMPNMDGLELISLIKENKYT-RHIPLIIISAK 1176
>gi|407785733|ref|ZP_11132880.1| chemotaxis protein CheY [Celeribacter baekdonensis B30]
gi|407202683|gb|EKE72673.1| chemotaxis protein CheY [Celeribacter baekdonensis B30]
Length = 128
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 11/69 (15%)
Query: 1 MTTTNGVLLSRLMSDG-------SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELI 53
M+T+ G++ + L S G +DG P+ +++ V V L+I+DY MPGM G +L+
Sbjct: 15 MSTSRGLIANALDSFGIRNVASAADG----PSALQKLAVAPVHLVISDYNMPGMDGLQLL 70
Query: 54 KKIKLQSFT 62
++ S T
Sbjct: 71 HALRSNSAT 79
>gi|390939300|ref|YP_006403037.1| response regulator containing CheY-like receiver domain and
AraC-type DNA-binding domain [Sulfurospirillum barnesii
SES-3]
gi|390192407|gb|AFL67462.1| response regulator containing CheY-like receiver domain and
AraC-type DNA-binding domain [Sulfurospirillum barnesii
SES-3]
Length = 218
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+G +G L+ VD+IITD MP M G E++KK+KL+ R IP +I ++
Sbjct: 39 SNGEEGLSLALQKD-------VDVIITDILMPTMNGIEMLKKLKLEY--HRTIPAIITTA 89
>gi|392533703|ref|ZP_10280840.1| response regulator receiver domain-containing protein
[Pseudoalteromonas arctica A 37-1-2]
Length = 265
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E ++ + DLI+TDY MP M G EL + ++ S ++ IP +++SSE
Sbjct: 184 EHLNNQSFDLIVTDYNMPEMDGRELTEAVR-SSNSYSHIPILMVSSE 229
>gi|428311538|ref|YP_007122515.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253150|gb|AFZ19109.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1099
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D MP MTG EL +KI+ + F E+P V+++++N
Sbjct: 739 DLILLDIMMPKMTGYELCQKIR-ERFPANELPVVLLTAKN 777
>gi|403381459|ref|ZP_10923516.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
JC66]
Length = 1069
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL+I+D MP M+G EL +KI+ + FT E+P +++++ +
Sbjct: 789 DLVISDIMMPQMSGYELTRKIR-ERFTLTELPVLLLTARD 827
>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 229
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 16 GSDGFD-LSPTDTEEVHVLA----VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
G +GF+ ++ + EE A DL+I D MPGM G E +K+K Q RE+P +I
Sbjct: 23 GKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFETYQKLKAQ----REVPIII 78
Query: 71 ISS 73
+S+
Sbjct: 79 LSA 81
>gi|347732938|ref|ZP_08866007.1| response regulator [Desulfovibrio sp. A2]
gi|347518309|gb|EGY25485.1| response regulator [Desulfovibrio sp. A2]
Length = 120
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D +I+D+ MP MTG EL++K++ S F ++P +++++E
Sbjct: 46 IDFVISDWNMPKMTGIELLRKVR-ASEEFADMPFLMVTAE 84
>gi|334136868|ref|ZP_08510320.1| response regulator receiver domain protein [Paenibacillus sp.
HGF7]
gi|333605610|gb|EGL16972.1| response regulator receiver domain protein [Paenibacillus sp.
HGF7]
Length = 342
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG + + +H DL++TD MP MTG EL +++ S FR P +I+S
Sbjct: 35 SDGKEALRM-------MHEYGADLVVTDISMPYMTGLELCRQL---SREFRYTPAIIVSE 84
Query: 74 EN 75
+
Sbjct: 85 HD 86
>gi|332296765|ref|YP_004438687.1| response regulator receiver protein [Treponema brennaborense DSM
12168]
gi|332179868|gb|AEE15556.1| response regulator receiver protein [Treponema brennaborense DSM
12168]
Length = 122
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG+DG + D LIITD MP M G +LIK+++ Q+ ++ P +++++E
Sbjct: 35 DGADGLVRAKADK-------FGLIITDINMPNMDGIQLIKELR-QTVEYKFTPIIVLTTE 86
Query: 75 N 75
N
Sbjct: 87 N 87
>gi|150402474|ref|YP_001329768.1| response regulator receiver protein [Methanococcus maripaludis
C7]
gi|150033504|gb|ABR65617.1| response regulator receiver protein [Methanococcus maripaludis
C7]
Length = 119
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLII D MPGMTG E + KI+ + F EIP +++++
Sbjct: 46 DLIILDIMMPGMTGWEFLDKIRNEGF---EIPVIVLTA 80
>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
HTCC2999]
Length = 228
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++ D+ +PG +G +L +K K FT REIP +++++
Sbjct: 48 DLVLLDWMLPGGSGVQLARKFKEHEFT-REIPVILLTA 84
>gi|428218587|ref|YP_007103052.1| response regulator receiver protein [Pseudanabaena sp. PCC 7367]
gi|427990369|gb|AFY70624.1| response regulator receiver protein [Pseudanabaena sp. PCC 7367]
Length = 419
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 21 DLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
D + T T+ + +I D MPG++G ELIK+I+ Q EIP V++++EN ++
Sbjct: 318 DDATTATQLIANYMPAVIFLDINMPGLSGFELIKQIRRQP-NLAEIPLVLVTAENSMS 374
>gi|430744391|ref|YP_007203520.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430016111|gb|AGA27825.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1159
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILARIDR 82
DL++ DY MPGM G E ++IK +S + PTV++ + E I++R +R
Sbjct: 703 DLVLMDYKMPGMDGIEAARRIK-KSSRLHQAPTVVMVTAYGREEIMSRAER 752
>gi|159905753|ref|YP_001549415.1| response regulator receiver protein [Methanococcus maripaludis
C6]
gi|159887246|gb|ABX02183.1| response regulator receiver protein [Methanococcus maripaludis
C6]
Length = 119
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLII D MPGMTG E + KI+ + F EIP +++++
Sbjct: 46 DLIILDIMMPGMTGWEFLDKIRNEGF---EIPVIVLTA 80
>gi|427734355|ref|YP_007053899.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Rivularia sp. PCC 7116]
gi|427369396|gb|AFY53352.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Rivularia sp. PCC 7116]
Length = 222
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ Q FR +P +++++
Sbjct: 48 DLIVTDIIMPQMNGYELVRQVR-QQVHFRLLPVILLTA 84
>gi|294776040|ref|ZP_06741536.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|294450178|gb|EFG18682.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
Length = 1365
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 23 SPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
S TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1142 SANGTEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1195
>gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 500
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
VD+++ D MPGM G E+ +KIK + T R IP ++I++ + A+ DR
Sbjct: 50 VDIVLLDVMMPGMDGYEVCRKIK-EDETLRHIPVIMITA--LTAKEDR 94
>gi|404497167|ref|YP_006721273.1| response receiver CheY associated with MCPs of class 40H
[Geobacter metallireducens GS-15]
gi|418066671|ref|ZP_12704031.1| response regulator receiver protein [Geobacter metallireducens
RCH3]
gi|78194770|gb|ABB32537.1| response receiver CheY associated with MCPs of class 40H
[Geobacter metallireducens GS-15]
gi|373560164|gb|EHP86436.1| response regulator receiver protein [Geobacter metallireducens
RCH3]
Length = 121
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 12 LMSDGSDGFD---LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPT 68
L+S+ + GF+ L P + VDLIITD MP + G EL+ ++ S +R IP
Sbjct: 28 LVSEAASGFEALRLLPRE-------PVDLIITDINMPDINGLELVSFVR-GSENYRHIPL 79
Query: 69 VIISSE 74
IIS+E
Sbjct: 80 FIISTE 85
>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus
glucosetrophus SIP3-4]
gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
MP688]
gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
[Methylovorus glucosetrophus SIP3-4]
gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
[Methylovorus sp. MP688]
Length = 228
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLII D+ +PGM+G E +K+K FT + IP +++++
Sbjct: 48 DLIILDWMLPGMSGIEFARKLKSDEFT-KAIPIIMLTA 84
>gi|218258542|ref|ZP_03474898.1| hypothetical protein PRABACTJOHN_00553 [Parabacteroides johnsonii DSM
18315]
gi|218225418|gb|EEC98068.1| hypothetical protein PRABACTJOHN_00553 [Parabacteroides johnsonii DSM
18315]
Length = 1374
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 28 EEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E + +LA +DL++TD MPG+ G EL KKIK ++ IP VI++++
Sbjct: 1150 EALELLANKNIDLVLTDIMMPGINGIELSKKIK-ENIDSSHIPVVILTAK 1198
>gi|443324573|ref|ZP_21053317.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xenococcus sp. PCC 7305]
gi|442795824|gb|ELS05167.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xenococcus sp. PCC 7305]
Length = 121
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG + D +V+ DLIITD MP M+G E +K+K S T +IP + S+
Sbjct: 33 SDGEEALD-------KVNQHQPDLIITDLVMPEMSGLEFCRKLKKDSAT-ADIPVIAWST 84
Query: 74 EN 75
+N
Sbjct: 85 KN 86
>gi|376295453|ref|YP_005166683.1| response regulator receiver protein [Desulfovibrio desulfuricans
ND132]
gi|323458014|gb|EGB13879.1| response regulator receiver protein [Desulfovibrio desulfuricans
ND132]
Length = 126
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DGS +++ D +D I++D+ MP M+G EL++K++ S + +IP +++++E
Sbjct: 39 DGSTAWEVLNKDN-------IDFIVSDWNMPTMSGIELLRKVR-ASEEYSDIPFLMVTAE 90
>gi|334366210|ref|ZP_08515149.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Alistipes sp. HGB5]
gi|313157579|gb|EFR56995.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Alistipes sp. HGB5]
Length = 849
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 28 EEVHVLAV----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
EE + A+ DL++TD MPGM+G EL +KIK S T I +++++ N+
Sbjct: 609 EEAYCQAINEQPDLVLTDIVMPGMSGIELCRKIKENSRT-SAIGVILLTAHNL 660
>gi|68305003|gb|AAY90014.1| predicted nitrogen regulation protein VV0196 [uncultured
bacterium BAC13K9BAC]
Length = 467
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
DLIITD MPGM+G E + K+ S F +PT+II++ A ID
Sbjct: 48 DLIITDIKMPGMSGLEFLDKV---SEKFPNLPTIIITAH---ANID 87
>gi|389693435|ref|ZP_10181529.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Microvirga sp. WSM3557]
gi|388586821|gb|EIM27114.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Microvirga sp. WSM3557]
Length = 574
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 17 SDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
++GF++S T E + ++ DL+I DY +PGM G EL ++++L T R IP +++
Sbjct: 31 TNGFNVSWRSTAEAALDSLNEKLPDLVIADYHLPGMNGDELTRQMRLNVRT-RAIPVIML 89
Query: 72 S 72
+
Sbjct: 90 T 90
>gi|87119466|ref|ZP_01075363.1| Response regulator receiver domain protein (CheY) [Marinomonas
sp. MED121]
gi|86164942|gb|EAQ66210.1| Response regulator receiver domain protein (CheY) [Marinomonas
sp. MED121]
Length = 130
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGMTG EL++ ++ + IP +++++E
Sbjct: 50 IDFLVTDWNMPGMTGIELLRSVRADE-KLKTIPVLMVTAE 88
>gi|46200530|gb|AAS82604.1| putative response regulator [Zea mays]
Length = 87
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 43 CMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+PGMTG EL+K++K +S +I VI+SSEN+ RI R
Sbjct: 37 AVPGMTGYELLKRVK-ESAALSDILVVIMSSENVPNRITR 75
>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 1116
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D MP MTG EL KK++ Q F E+P V+++++N
Sbjct: 756 DLILLDIMMPQMTGYELCKKLREQ-FLPNELPIVLLTAKN 794
>gi|333381640|ref|ZP_08473319.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC
BAA-286]
gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1347
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG +G L + EE+ DLII+D MP M G E K+K S + IP +++
Sbjct: 1123 LANDGIEGIKL--LEKEEI-----DLIISDIMMPNMDGIEFCNKVK-NSLLWNHIPLIML 1174
Query: 72 SSE-NILARID 81
+++ NI ++I+
Sbjct: 1175 TAKTNIASKIE 1185
>gi|189424958|ref|YP_001952135.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase [Geobacter lovleyi SZ]
gi|189421217|gb|ACD95615.1| response regulator receiver modulated diguanylate cyclase with
PAS/PAC sensor [Geobacter lovleyi SZ]
Length = 616
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL++TD MP MTG +L ++IKL+ +P +IISS +
Sbjct: 64 DLVLTDITMPAMTGLDLARQIKLER---PAVPVIIISSHD 100
>gi|34557035|ref|NP_906850.1| response regulator [Wolinella succinogenes DSM 1740]
gi|34482750|emb|CAE09750.1| RESPONSE REGULATOR [Wolinella succinogenes]
Length = 125
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+G +G+D + + + ++ITD+ MP M G EL+KK++ F +IP +++++
Sbjct: 32 ENGVEGWDQMDANAD------IKVLITDWNMPEMNGLELVKKVRADK-RFVDIPIIMVTT 84
Query: 74 ENILARI 80
E A +
Sbjct: 85 EGGKAEV 91
>gi|352081881|ref|ZP_08952723.1| two component transcriptional regulator PhoB, winged helix family
[Rhodanobacter sp. 2APBS1]
gi|389796550|ref|ZP_10199602.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodanobacter sp. 116-2]
gi|351682787|gb|EHA65883.1| two component transcriptional regulator PhoB, winged helix family
[Rhodanobacter sp. 2APBS1]
gi|388448474|gb|EIM04458.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodanobacter sp. 116-2]
Length = 229
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D+ +PGM+G EL ++++ + + REIP +++++
Sbjct: 48 DLILLDWMLPGMSGLELARRLRKEELS-REIPIIMLTARG 86
>gi|15614110|ref|NP_242413.1| hypothetical protein BH1547 [Bacillus halodurans C-125]
gi|10174164|dbj|BAB05266.1| BH1547 [Bacillus halodurans C-125]
Length = 661
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++ D MP M+G EL K I+ Q FT E+P ++I++
Sbjct: 375 DLVVADVMMPKMSGYELTKNIR-QRFTLTELPILLITA 411
>gi|424871870|ref|ZP_18295532.1| response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393167571|gb|EJC67618.1| response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 353
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+++ DY MP M G E+I++++ Q ++++P V+I+S+
Sbjct: 47 DVVLVDYMMPEMNGIEMIRRLRCQP-GYQDVPIVMITSQ 84
>gi|390946212|ref|YP_006409972.1| signal transduction histidine kinase [Alistipes finegoldii DSM 17242]
gi|390422781|gb|AFL77287.1| signal transduction histidine kinase [Alistipes finegoldii DSM 17242]
Length = 1430
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 28 EEVHVLAV----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
EE + A+ DL++TD MPGM+G EL +KIK S T I +++++ N+
Sbjct: 1190 EEAYCQAINEQPDLVLTDIVMPGMSGIELCRKIKENSRT-SAIGVILLTAHNL 1241
>gi|333984095|ref|YP_004513305.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Methylomonas methanica MC09]
gi|333808136|gb|AEG00806.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Methylomonas methanica MC09]
Length = 699
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D MPGM+G E++++++L T R+IP + +S+++
Sbjct: 54 DLILLDVMMPGMSGIEVMQQLRLSQET-RDIPVIFVSADD 92
>gi|221214224|ref|ZP_03587196.1| chemotaxis protein CheY [Burkholderia multivorans CGD1]
gi|221165879|gb|EED98353.1| chemotaxis protein CheY [Burkholderia multivorans CGD1]
Length = 125
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ +DG GFDL+ T DL++TD+ MP +G ELI ++ Q + + P +++
Sbjct: 31 VAADGEAGFDLAATTP-------YDLVLTDHNMPRKSGLELIAALR-QLSAYADTPILVL 82
Query: 72 SSEN 75
++E
Sbjct: 83 TTEG 86
>gi|312962253|ref|ZP_07776745.1| response regulator receiver domain protein (CheY) [Pseudomonas
fluorescens WH6]
gi|395648630|ref|ZP_10436480.1| chemotaxis protein CheY [Pseudomonas extremaustralis 14-3 substr.
14-3b]
gi|311283590|gb|EFQ62179.1| response regulator receiver domain protein (CheY) [Pseudomonas
fluorescens WH6]
Length = 128
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 88
>gi|338536628|ref|YP_004669962.1| response regulator [Myxococcus fulvus HW-1]
gi|337262724|gb|AEI68884.1| response regulator [Myxococcus fulvus HW-1]
Length = 231
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
E + + D+++TD+ MPGMTG EL+++IK
Sbjct: 41 ERLEAFSPDIVLTDFRMPGMTGSELLQRIK 70
>gi|298674027|ref|YP_003725777.1| response regulator receiver protein [Methanohalobium evestigatum
Z-7303]
gi|298287015|gb|ADI72981.1| response regulator receiver protein [Methanohalobium evestigatum
Z-7303]
Length = 131
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+ DGF+ E++ VDLI+ D +P M G E I K+K +F F +IP V +++
Sbjct: 32 NAEDGFEA----LEKLEDYYVDLILLDIQLPQMNGLEFIYKLK-NNFLFTDIPVVALTAH 86
Query: 75 NILA 78
+L
Sbjct: 87 AMLG 90
>gi|254457740|ref|ZP_05071168.1| response regulator receiver domain protein [Sulfurimonas
gotlandica GD1]
gi|373867237|ref|ZP_09603635.1| signal transduction response regulator [Sulfurimonas gotlandica
GD1]
gi|207086532|gb|EDZ63816.1| response regulator receiver domain protein [Sulfurimonas
gotlandica GD1]
gi|372469338|gb|EHP29542.1| signal transduction response regulator [Sulfurimonas gotlandica
GD1]
Length = 568
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 38/59 (64%), Gaps = 10/59 (16%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG +G++ ++ +D+IITDY MP + G ++I+++++ + ++IP +++S+
Sbjct: 50 DGEEGYEKYISE-------KIDIIITDYNMPKLNGLDMIERVRISN---KDIPIILVSA 98
>gi|114777598|ref|ZP_01452579.1| sensor histidine kinase/response regulator [Mariprofundus
ferrooxydans PV-1]
gi|114552069|gb|EAU54586.1| sensor histidine kinase/response regulator [Mariprofundus
ferrooxydans PV-1]
Length = 133
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 16/74 (21%)
Query: 8 LLSRLMSDGSDGFDLSPTDTE------EVHVLAV---DLIITDYCMPGMTGCELIKKIKL 58
LL ++M+ GFD+ TD E E++ A DL++TD CMP M GC+LI++I+
Sbjct: 26 LLVKIMT--KKGFDV--TDAEDGKRALELYRHAAGGFDLLMTDICMPEMNGCDLIREIRR 81
Query: 59 QSFTFREIPTVIIS 72
Q + +P +++S
Sbjct: 82 QD---QCLPIIVVS 92
>gi|347757978|ref|YP_004865540.1| response regulator [Micavibrio aeruginosavorus ARL-13]
gi|347590496|gb|AEP09538.1| response regulator [Micavibrio aeruginosavorus ARL-13]
Length = 137
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+GS+G +L + V DLII D MP M+G EL+ +I+ +R++P + +++
Sbjct: 45 ENGSEGLEL-------LQVHEPDLIICDRMMPAMSGTELLARIRGVFPQYRDVPFIFLTA 97
Query: 74 EN 75
N
Sbjct: 98 LN 99
>gi|373458902|ref|ZP_09550669.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
gi|371720566|gb|EHO42337.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
Length = 128
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++TD MPGM G ELI+KI+ + EIP +IIS+
Sbjct: 50 DLVLTDIQMPGMDGKELIQKIRKK---LPEIPILIISA 84
>gi|325299028|ref|YP_004258945.1| histidine kinase [Bacteroides salanitronis DSM 18170]
gi|324318581|gb|ADY36472.1| histidine kinase [Bacteroides salanitronis DSM 18170]
Length = 1325
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 12 LMSDGSDG--FDLSPTDTEEVHVL---------------AVDLIITDYCMPGMTGCELIK 54
L+ D +D F L+ EE HV+ + D+II+D +PGM G EL K
Sbjct: 1078 LLIDDNDELRFYLTTVFKEEYHVIGFPDSESALAYLDKQSADMIISDVMLPGMQGDELCK 1137
Query: 55 KIKLQSFTFREIPTVIISS 73
K+K FT IP +++++
Sbjct: 1138 KLK-SDFTASHIPVILLTA 1155
>gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1055
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 9/64 (14%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++G +G D V L+ D+IITD MP M G +L+++++ +S FREI VI+SS
Sbjct: 869 ANGLEGLD-------RVRELSPDVIITDLVMPKMDGFQLVRRLR-ESPEFREI-VVIVSS 919
Query: 74 ENIL 77
++
Sbjct: 920 ASVF 923
>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
gamma proteobacterium HTCC2148]
gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
gamma proteobacterium HTCC2148]
Length = 234
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+ + + HVL VD +++ D+ +PG +G EL++++K + T REIP ++++++
Sbjct: 31 IEAENIRDAHVLIVDERPDIVLLDWMLPGGSGLELLRRLKREDNT-REIPVIMLTAK 86
>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanibulbus indolifex HEL-45]
gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanibulbus indolifex HEL-45]
Length = 229
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 17 SDGFDLS-PTDTEEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
++GF++ D EE +L A DL+I D+ MP M+G E+ +++K + T R IP +++
Sbjct: 27 AEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEVCRQLKTREST-RHIPVIML 85
Query: 72 SSEN 75
S+ +
Sbjct: 86 SARS 89
>gi|427707658|ref|YP_007050035.1| LuxR family two component transcriptional regulator [Nostoc sp.
PCC 7107]
gi|427360163|gb|AFY42885.1| two component transcriptional regulator, LuxR family [Nostoc sp.
PCC 7107]
Length = 227
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ Q+ FR +P +++++
Sbjct: 48 DLIVTDIVMPRMNGYELVRRVRQQA-GFRLLPVILLTA 84
>gi|46580478|ref|YP_011286.1| chemotaxis protein CheY [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602202|ref|YP_966602.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
gi|387153775|ref|YP_005702711.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
gi|46449897|gb|AAS96546.1| chemotaxis protein CheY [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562431|gb|ABM28175.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
gi|311234219|gb|ADP87073.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
Length = 122
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
VDLII+D MP M G IK ++ Q T+R +P V++S+E
Sbjct: 47 GVDLIISDVNMPRMDGFTFIKTVREQD-TYRNLPIVVLSTE 86
>gi|410617185|ref|ZP_11328159.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola polaris LMG 21857]
gi|410163301|dbj|GAC32297.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola polaris LMG 21857]
Length = 229
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G +L K++K FT R+IP +++++
Sbjct: 48 DLILLDWMLPGGSGVQLAKRLKQHEFT-RDIPIIMVTA 84
>gi|381204882|ref|ZP_09911953.1| response regulator receiver protein [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 126
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
T E++ +D +ITD+ MP MTG EL++ I+ S + +P +++++ ENI+A
Sbjct: 42 TALEKLKSEKIDFVITDWNMPKMTGLELVRMIRSDS-ELKHLPILMVTAEALQENIVA 98
>gi|326796448|ref|YP_004314268.1| response regulator receiver protein [Marinomonas mediterranea
MMB-1]
gi|326547212|gb|ADZ92432.1| response regulator receiver protein [Marinomonas mediterranea
MMB-1]
Length = 126
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGMTG EL++ ++ + IP +++++E
Sbjct: 46 IDFLVTDWNMPGMTGIELLRAVRADD-KLKTIPVLMVTAE 84
>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
atlantica T6c]
gi|332307706|ref|YP_004435557.1| winged helix family two component transcriptional regulator PhoB
[Glaciecola sp. 4H-3-7+YE-5]
gi|410625611|ref|ZP_11336387.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola mesophila KMM 241]
gi|410643664|ref|ZP_11354157.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola chathamensis S18K6]
gi|410646965|ref|ZP_11357406.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola agarilytica NO2]
gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas atlantica T6c]
gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
[Glaciecola sp. 4H-3-7+YE-5]
gi|410133466|dbj|GAC05805.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola agarilytica NO2]
gi|410136744|dbj|GAC12344.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola chathamensis S18K6]
gi|410154821|dbj|GAC23156.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola mesophila KMM 241]
Length = 229
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G +L K++K FT R+IP +++++
Sbjct: 48 DLILLDWMLPGGSGVQLAKRLKQHEFT-RDIPIIMVTA 84
>gi|421141330|ref|ZP_15601315.1| Response regulator receiver domain protein (CheY) [Pseudomonas
fluorescens BBc6R8]
gi|404507339|gb|EKA21324.1| Response regulator receiver domain protein (CheY) [Pseudomonas
fluorescens BBc6R8]
Length = 132
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 53 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 92
>gi|298290964|ref|YP_003692903.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Starkeya novella DSM 506]
gi|296927475|gb|ADH88284.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Starkeya novella DSM 506]
Length = 713
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+ DLIITDY MP MTG EL+ ++ R++P V++++
Sbjct: 47 SADLIITDYKMPQMTGAELVAAVRALP-RHRDVPIVVVTA 85
>gi|288800412|ref|ZP_06405870.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Prevotella sp. oral taxon
299 str. F0039]
gi|288332625|gb|EFC71105.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Prevotella sp. oral taxon
299 str. F0039]
Length = 1324
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 28 EEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
E + +LA +D+I+TD MP M G EL KK+K IP V++++ N
Sbjct: 1103 EALAILAERHIDIIVTDIMMPNMNGFELCKKVK-SDINISHIPIVLLTARN 1152
>gi|148266181|ref|YP_001232887.1| CheA signal transduction histidine kinase [Geobacter uraniireducens
Rf4]
gi|146399681|gb|ABQ28314.1| CheA signal transduction histidine kinase [Geobacter uraniireducens
Rf4]
Length = 686
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
E+V DL+I+D MPG++G EL ++++ +R++P +I+SS LAR
Sbjct: 604 EKVAGTRFDLVISDVMMPGISGFELTRRLRTME-DYRDVPVIIVSS---LAR 651
>gi|354581917|ref|ZP_09000820.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
lactis 154]
gi|353200534|gb|EHB65994.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
lactis 154]
Length = 1038
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL+ITD MP M+G EL ++I+ + FT E+P +++++ +
Sbjct: 754 DLVITDIMMPQMSGYELTRRIR-ERFTLTELPILLLTARS 792
>gi|395494654|ref|ZP_10426233.1| protein CheY [Pseudomonas sp. PAMC 25886]
gi|395796563|ref|ZP_10475859.1| protein CheY [Pseudomonas sp. Ag1]
gi|395339417|gb|EJF71262.1| protein CheY [Pseudomonas sp. Ag1]
Length = 128
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 88
>gi|260775691|ref|ZP_05884587.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Vibrio coralliilyticus ATCC BAA-450]
gi|260608107|gb|EEX34276.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Vibrio coralliilyticus ATCC BAA-450]
Length = 541
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+DLIITDY MP MTG EL+ ++K + E+P +++S + L+ +
Sbjct: 48 IDLIITDYRMPRMTGTELLLEVKQRH---PEVPAIMLSGQADLSGV 90
>gi|427737687|ref|YP_007057231.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Rivularia sp. PCC
7116]
gi|427372728|gb|AFY56684.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Rivularia sp. PCC
7116]
Length = 120
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+D DG E+ + D IITD MPGM+G E +K+K ++ ++IP + SS
Sbjct: 32 TDAKDGL-------EKALLYQPDAIITDVVMPGMSGFEFCRKLK-RNLDTKKIPIIFCSS 83
Query: 74 EN 75
+N
Sbjct: 84 KN 85
>gi|414586308|tpg|DAA36879.1| TPA: aberrant phyllotaxy1 [Zea mays]
Length = 148
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQ 59
V +IITDY MP MTG EL+KKIK +
Sbjct: 61 VSMIITDYWMPEMTGYELLKKIKAE 85
>gi|374701829|ref|ZP_09708699.1| response regulator receiver protein [Pseudomonas sp. S9]
Length = 128
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+ D ++TD+ MPGMTG EL++ ++ +++P +++++E
Sbjct: 49 SFDFLVTDWNMPGMTGIELLRAVRADE-RLKQLPVLMVTAE 88
>gi|320353940|ref|YP_004195279.1| Fis family two component sigma54 specific transcriptional
regulator [Desulfobulbus propionicus DSM 2032]
gi|320122442|gb|ADW17988.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobulbus propionicus DSM 2032]
Length = 462
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 7 VLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
++LS L+ D +G+++ D+ V+ +DL+++D MPGM G E + KIK +
Sbjct: 15 IVLSELLKD--EGYEVFTADSGLAGLPIVYSTDLDLVLSDMKMPGMDGIEFLGKIKEYN- 71
Query: 62 TFREIPTVIISS 73
RE+P ++I++
Sbjct: 72 --RELPVILITA 81
>gi|388547979|ref|ZP_10151236.1| two-component response regulator CheY [Pseudomonas sp. M47T1]
gi|388273898|gb|EIK93503.1| two-component response regulator CheY [Pseudomonas sp. M47T1]
Length = 128
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 21 DLSPTDTEE----------VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
DL T+T+E +H + D ++TD+ MPGM+G +L+++++ + +P ++
Sbjct: 26 DLGFTNTQEADDGTTALPMLHSGSFDFLVTDWNMPGMSGIDLLRQVRADE-RLKHLPVLM 84
Query: 71 ISSE 74
+++E
Sbjct: 85 VTAE 88
>gi|196232621|ref|ZP_03131473.1| two component transcriptional regulator, LuxR family
[Chthoniobacter flavus Ellin428]
gi|196223383|gb|EDY17901.1| two component transcriptional regulator, LuxR family
[Chthoniobacter flavus Ellin428]
Length = 220
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 23 SPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS---ENILAR 79
SP + +H D+I+ D MPG +G E++K++K F +P +++SS + + AR
Sbjct: 36 SPETIQRLHAQTWDVIVLDIQMPGPSGLEVLKEVKQ---NFPRLPVLVLSSVPEDQLAAR 92
Query: 80 I 80
+
Sbjct: 93 V 93
>gi|440740460|ref|ZP_20919944.1| chemotaxis protein CheY [Pseudomonas fluorescens BRIP34879]
gi|447917593|ref|YP_007398161.1| chemotaxis protein CheY [Pseudomonas poae RE*1-1-14]
gi|440376535|gb|ELQ13202.1| chemotaxis protein CheY [Pseudomonas fluorescens BRIP34879]
gi|445201456|gb|AGE26665.1| chemotaxis protein CheY [Pseudomonas poae RE*1-1-14]
Length = 128
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 88
>gi|371776078|ref|ZP_09482400.1| response regulator receiver protein [Anaerophaga sp. HS1]
Length = 121
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
+D+IITD MP M G ELI+K++ + ++ IP + +++E+ A+
Sbjct: 47 IDIIITDLHMPNMDGLELIRKVR-EMDNYKHIPILFLTTESQAAK 90
>gi|346225089|ref|ZP_08846231.1| response regulator receiver protein [Anaerophaga thermohalophila
DSM 12881]
Length = 121
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
+D+IITD MP M G ELI+K++ + ++ IP + +++E+ A+
Sbjct: 47 IDIIITDLHMPNMNGLELIRKVR-EMDDYKHIPILFLTTESQAAK 90
>gi|332533297|ref|ZP_08409163.1| chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037179|gb|EGI73635.1| chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Pseudoalteromonas
haloplanktis ANT/505]
Length = 265
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+TDY MP M G EL + ++ S ++ IP +++SSE
Sbjct: 192 DLIVTDYNMPEMDGRELTEAVR-SSNSYSHIPILMVSSE 229
>gi|308048782|ref|YP_003912348.1| response regulator receiver protein [Ferrimonas balearica DSM
9799]
gi|307630972|gb|ADN75274.1| response regulator receiver protein [Ferrimonas balearica DSM
9799]
Length = 372
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
E H + DL++ D CMP M G EL+K I + EIP+++I+ ++ +
Sbjct: 43 ERFHDVQPDLVLVDLCMPRMGGLELLKVISRMA---PEIPSIVITGNKAMSDV 92
>gi|256421751|ref|YP_003122404.1| histidine kinase [Chitinophaga pinensis DSM 2588]
gi|256036659|gb|ACU60203.1| histidine kinase [Chitinophaga pinensis DSM 2588]
Length = 1347
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ + +DG TE L DLII+D MPG G +L K IK Q+F IP VI+S
Sbjct: 1119 IHEAADGNSAMTIATE----LNPDLIISDVMMPGGNGIDLCKHIK-QTFETSHIPFVILS 1173
Query: 73 SENIL 77
+ + L
Sbjct: 1174 ARDGL 1178
>gi|387894864|ref|YP_006325161.1| chemotaxis protein CheY [Pseudomonas fluorescens A506]
gi|423692755|ref|ZP_17667275.1| chemotaxis protein CheY [Pseudomonas fluorescens SS101]
gi|22596850|gb|AAN03368.1|AF481091_5 CheY [Pseudomonas fluorescens]
gi|387160955|gb|AFJ56154.1| chemotaxis protein CheY [Pseudomonas fluorescens A506]
gi|388002229|gb|EIK63558.1| chemotaxis protein CheY [Pseudomonas fluorescens SS101]
Length = 124
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 45 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 84
>gi|395225026|ref|ZP_10403558.1| Response regulator containing a CheY-like receiver domain and a
GGDEF domain CheY [Thiovulum sp. ES]
gi|394446859|gb|EJF07670.1| Response regulator containing a CheY-like receiver domain and a
GGDEF domain CheY [Thiovulum sp. ES]
Length = 121
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G EL+KK++ S F ++P +++++E A +
Sbjct: 49 MLITDWNMPEMNGLELVKKVR-ASGEFNDLPIIMVTTEGGKAEV 91
>gi|237753271|ref|ZP_04583751.1| response regulator [Helicobacter winghamensis ATCC BAA-430]
gi|229375538|gb|EEO25629.1| response regulator [Helicobacter winghamensis ATCC BAA-430]
Length = 124
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
V ++ITD+ MP M G +L+KK++ F++IP +++++E A +
Sbjct: 47 VKVLITDWNMPEMNGLDLVKKVRADE-RFKDIPIIMVTTEGGKAEV 91
>gi|375147087|ref|YP_005009528.1| response regulator receiver protein [Niastella koreensis GR20-10]
gi|361061133|gb|AEW00125.1| response regulator receiver protein [Niastella koreensis GR20-10]
Length = 256
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
+VDL+ITD MP M G EL K IK F +P ++++++N L
Sbjct: 45 SVDLVITDIMMPFMDGFELCKTIK-SDVEFSHVPVILLTAKNTL 87
>gi|326795760|ref|YP_004313580.1| response regulator receiver protein [Marinomonas mediterranea
MMB-1]
gi|326546524|gb|ADZ91744.1| response regulator receiver protein [Marinomonas mediterranea
MMB-1]
Length = 265
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLIITDY MP M G EL +K S IP +++SS+
Sbjct: 192 DLIITDYNMPEMNGVELANYVKTSS-NHSHIPVLMVSSD 229
>gi|257484895|ref|ZP_05638936.1| chemotaxis protein CheY [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|289629012|ref|ZP_06461966.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289647089|ref|ZP_06478432.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str.
2250]
gi|416015577|ref|ZP_11563151.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str.
B076]
gi|416026183|ref|ZP_11569716.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str.
race 4]
gi|320325135|gb|EFW81204.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str.
B076]
gi|320329394|gb|EFW85387.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str.
race 4]
Length = 132
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGMTG +L+++++ + +P +++++
Sbjct: 37 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMTGIDLLRQVRADE-RLKSLPVLMVTA 91
Query: 74 E 74
E
Sbjct: 92 E 92
>gi|254444971|ref|ZP_05058447.1| hypothetical protein VDG1235_3214 [Verrucomicrobiae bacterium
DG1235]
gi|198259279|gb|EDY83587.1| hypothetical protein VDG1235_3214 [Verrucomicrobiae bacterium
DG1235]
Length = 121
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG + FD V VDL+ITD MP M G EL ++++ +R +P V++++
Sbjct: 32 ADGIEAFD-------TVQRNQVDLVITDVNMPRMDGIELTRRLRTLP-AYRSVPIVLLTT 83
Query: 74 EN 75
E+
Sbjct: 84 ES 85
>gi|71735827|ref|YP_275520.1| chemotaxis protein CheY [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71556380|gb|AAZ35591.1| chemotaxis protein CheY [Pseudomonas syringae pv. phaseolicola
1448A]
gi|283133055|dbj|BAI63822.1| chemotaxis protein CheY [Pseudomonas syringae pv. tabaci]
Length = 124
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGMTG +L+++++ + +P +++++
Sbjct: 29 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMTGIDLLRQVRADE-RLKSLPVLMVTA 83
Query: 74 E 74
E
Sbjct: 84 E 84
>gi|399908058|ref|ZP_10776610.1| phosphate regulon transcriptional regulator PhoB [Halomonas sp.
KM-1]
Length = 229
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
L + + H + VD L++ D+ MPG +G EL +++K + T RE+P +++++++
Sbjct: 31 LEAANAQSAHTMIVDNQPDLLLLDWMMPGTSGIELARRLKREEAT-RELPIIMLTAKS 87
>gi|83312538|ref|YP_422802.1| response regulator [Magnetospirillum magneticum AMB-1]
gi|82947379|dbj|BAE52243.1| Response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Magnetospirillum magneticum AMB-1]
Length = 339
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
D+I+TDY MPGM G + I++++ + +++P V++++ ++
Sbjct: 47 DIILTDYMMPGMDGLDFIRQVRRRE-EMQDVPVVVVTTSDV 86
>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
V453]
gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
V453]
Length = 1031
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
+DL+ITD+ MPGM+G +L + ++ Q F E+P +++++ ++
Sbjct: 741 GIDLVITDWMMPGMSGLQLCRTVREQHTLF-ELPILMLTARSL 782
>gi|261368511|ref|ZP_05981394.1| DNA-binding response regulator, AraC family [Subdoligranulum
variabile DSM 15176]
gi|282569390|gb|EFB74925.1| response regulator receiver domain protein [Subdoligranulum
variabile DSM 15176]
Length = 535
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 6 GVLLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
G ++ ++SDG + E + L VDL+ITD MP MTG EL++ ++ ++ +
Sbjct: 27 GYEVAAVLSDGQEAL-------EYIKKLPVDLVITDVMMPKMTGLELLETVRRENLS 76
>gi|163801863|ref|ZP_02195760.1| chemotaxis protein CheY [Vibrio sp. AND4]
gi|159174371|gb|EDP59175.1| chemotaxis protein CheY [Vibrio sp. AND4]
Length = 126
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + +++P ++I++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKHIRADA-ELKQLPVLMITAE 88
>gi|423312658|ref|ZP_17290595.1| hypothetical protein HMPREF1058_01207 [Bacteroides vulgatus
CL09T03C04]
gi|392687392|gb|EIY80685.1| hypothetical protein HMPREF1058_01207 [Bacteroides vulgatus
CL09T03C04]
Length = 1417
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1194 ADGVAGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1245
>gi|423242090|ref|ZP_17223200.1| hypothetical protein HMPREF1065_03823 [Bacteroides dorei CL03T12C01]
gi|392639834|gb|EIY33642.1| hypothetical protein HMPREF1065_03823 [Bacteroides dorei CL03T12C01]
Length = 1417
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1194 ADGVAGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1245
>gi|423232656|ref|ZP_17219056.1| hypothetical protein HMPREF1063_04876 [Bacteroides dorei CL02T00C15]
gi|423247346|ref|ZP_17228396.1| hypothetical protein HMPREF1064_04602 [Bacteroides dorei CL02T12C06]
gi|392623749|gb|EIY17851.1| hypothetical protein HMPREF1063_04876 [Bacteroides dorei CL02T00C15]
gi|392632754|gb|EIY26711.1| hypothetical protein HMPREF1064_04602 [Bacteroides dorei CL02T12C06]
Length = 1417
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1194 ADGVAGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1245
>gi|388466771|ref|ZP_10140981.1| chemotaxis protein CheY [Pseudomonas synxantha BG33R]
gi|388010351|gb|EIK71538.1| chemotaxis protein CheY [Pseudomonas synxantha BG33R]
Length = 124
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 45 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 84
>gi|422405595|ref|ZP_16482637.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422581617|ref|ZP_16656759.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|422596210|ref|ZP_16670493.1| chemotaxis protein CheY [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605382|ref|ZP_16677396.1| chemotaxis protein CheY [Pseudomonas syringae pv. mori str.
301020]
gi|422681744|ref|ZP_16740012.1| chemotaxis protein CheY [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|298157904|gb|EFH98983.1| two-component system signal transduction response regulator
receiver [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|330866466|gb|EGH01175.1| chemotaxis protein CheY [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330880596|gb|EGH14745.1| chemotaxis protein CheY [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330889038|gb|EGH21699.1| chemotaxis protein CheY [Pseudomonas syringae pv. mori str.
301020]
gi|330986510|gb|EGH84613.1| chemotaxis protein CheY [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011086|gb|EGH91142.1| chemotaxis protein CheY [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 128
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGMTG +L+++++ + +P +++++
Sbjct: 33 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMTGIDLLRQVRADE-RLKSLPVLMVTA 87
Query: 74 E 74
E
Sbjct: 88 E 88
>gi|265754966|ref|ZP_06089880.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263234577|gb|EEZ20156.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1417
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1194 ADGVAGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1245
>gi|345513297|ref|ZP_08792819.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|229437083|gb|EEO47160.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1417
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1194 ADGVAGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1245
>gi|229591831|ref|YP_002873950.1| chemotaxis protein CheY [Pseudomonas fluorescens SBW25]
gi|229363697|emb|CAY51074.1| chemotaxis protein CheY [Pseudomonas fluorescens SBW25]
Length = 124
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 45 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRSLPVLMVTAE 84
>gi|212693766|ref|ZP_03301894.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855]
gi|237709290|ref|ZP_04539771.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|212663655|gb|EEB24229.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides dorei DSM 17855]
gi|229456675|gb|EEO62396.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1417
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG GF E DLII D MPGM G E+ +K+K F+ IP +++++
Sbjct: 1194 ADGVAGF-------ERARTYDADLIICDVLMPGMNGYEVTRKLK-NEFSTSHIPIILLTA 1245
>gi|444919454|ref|ZP_21239477.1| response regulator [Cystobacter fuscus DSM 2262]
gi|444708529|gb|ELW49591.1| response regulator [Cystobacter fuscus DSM 2262]
Length = 121
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
L++TDY MP M G EL+ +K + FR+IP VI+SS
Sbjct: 48 LVLTDYMMPLMNGPELLDAMKKEP-EFRDIPVVIMSS 83
>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera
mobilis JLW8]
gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
[Methylotenera mobilis JLW8]
Length = 235
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PGM G EL +K+K ++T + IP +++++
Sbjct: 48 DLILLDWMLPGMNGLELARKLKSDTYT-KNIPIIMLTA 84
>gi|434387819|ref|YP_007098430.1| PAS domain S-box [Chamaesiphon minutus PCC 6605]
gi|428018809|gb|AFY94903.1| PAS domain S-box [Chamaesiphon minutus PCC 6605]
Length = 1545
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
E ++ DL++TD MP M GCEL++ ++ S T EIP V++S+
Sbjct: 658 ESIYRQQPDLVLTDVMMPRMDGCELLRVLR-SSPTTAEIPIVLLSA 702
>gi|239905594|ref|YP_002952333.1| chemotaxis protein CheY [Desulfovibrio magneticus RS-1]
gi|239795458|dbj|BAH74447.1| chemotaxis protein CheY [Desulfovibrio magneticus RS-1]
Length = 139
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+GS+ F L + L +DL++ D+ MP + G +L++KI+ + + +P +I+S
Sbjct: 46 ENGSEAFGL-------LKKLTIDLVVADWNMPKLNGYQLLEKIRADE-SLKYLPVIIVSG 97
Query: 74 E 74
E
Sbjct: 98 E 98
>gi|121998163|ref|YP_001002950.1| response regulator receiver protein [Halorhodospira halophila SL1]
gi|121589568|gb|ABM62148.1| response regulator receiver protein [Halorhodospira halophila SL1]
Length = 265
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
E +H + DLI+TDY MP M G EL + ++ Q F +P ++ISS
Sbjct: 184 EALHRSSFDLIVTDYNMPEMDGAELARYVRQQP-EFLHLPILMISS 228
>gi|428206584|ref|YP_007090937.1| LuxR family two component transcriptional regulator
[Chroococcidiopsis thermalis PCC 7203]
gi|428008505|gb|AFY87068.1| two component transcriptional regulator, LuxR family
[Chroococcidiopsis thermalis PCC 7203]
Length = 218
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG G D+ +T H L++TD MP M G +L++ ++ Q +FR +P + ++
Sbjct: 33 ADGQQGLDM--VETYRPH-----LMVTDIVMPRMNGYQLVRSVR-QHPSFRLLPVIFLTE 84
Query: 74 EN 75
N
Sbjct: 85 RN 86
>gi|421594855|ref|ZP_16039138.1| response regulator receiver sensor hybrid histidine kinase,
partial [Rhizobium sp. Pop5]
gi|403698820|gb|EJZ16593.1| response regulator receiver sensor hybrid histidine kinase,
partial [Rhizobium sp. Pop5]
Length = 81
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 9/53 (16%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI------ISSENILARIDR 82
DL+ITD+ MPGMTG EL + ++ +F +P ++ +S +N + R+ R
Sbjct: 7 DLVITDHAMPGMTGAELARHLR---SSFPGLPVILASGYAELSEDNGIGRMLR 56
>gi|242310142|ref|ZP_04809297.1| response regulator [Helicobacter pullorum MIT 98-5489]
gi|239523439|gb|EEQ63305.1| response regulator [Helicobacter pullorum MIT 98-5489]
Length = 124
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
V ++ITD+ MP M G +L+KK++ F++IP +++++E A +
Sbjct: 47 VKVLITDWNMPEMNGLDLVKKVRADD-RFKDIPIIMVTTEGGKAEV 91
>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
Length = 251
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 18 DGFD-LSPTDTEEVHVLA----VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+G+D L D EE LA VD+ I D +PGM G EL++KI+ +R P + +S
Sbjct: 38 EGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGFELVRKIRSME-KYRNTPVIFLS 96
Query: 73 SE 74
++
Sbjct: 97 AK 98
>gi|153876496|ref|ZP_02003789.1| type IV pilus response regulator PilH [Beggiatoa sp. PS]
gi|152067040|gb|EDN66211.1| type IV pilus response regulator PilH [Beggiatoa sp. PS]
Length = 119
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG G ++ L DLI+ D MPG+ G + +K+K QS +IP VI+SS
Sbjct: 32 SDGEQGI-------QKAKELKPDLIVMDIVMPGLDGFKTTRKLKKQSDL--KIPIVIMSS 82
Query: 74 EN 75
+N
Sbjct: 83 KN 84
>gi|393785745|ref|ZP_10373891.1| hypothetical protein HMPREF1068_00171 [Bacteroides nordii CL02T12C05]
gi|392661364|gb|EIY54950.1| hypothetical protein HMPREF1068_00171 [Bacteroides nordii CL02T12C05]
Length = 1345
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL+ITD MPG G EL ++IK T IP +I+S++N
Sbjct: 1131 DLVITDIMMPGTDGFELTRQIKQNKHTMY-IPLIILSAKN 1169
>gi|422297960|ref|ZP_16385585.1| chemotaxis protein CheY [Pseudomonas avellanae BPIC 631]
gi|422589274|ref|ZP_16663937.1| chemotaxis protein CheY [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|422651597|ref|ZP_16714391.1| chemotaxis protein CheY [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330876039|gb|EGH10188.1| chemotaxis protein CheY [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330964674|gb|EGH64934.1| chemotaxis protein CheY [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407990475|gb|EKG32553.1| chemotaxis protein CheY [Pseudomonas avellanae BPIC 631]
Length = 128
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGMTG +L+++++ + +P +++++
Sbjct: 33 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMTGIDLLRQVRADD-RLKSLPVLMVTA 87
Query: 74 E 74
E
Sbjct: 88 E 88
>gi|322418878|ref|YP_004198101.1| Fis family two component sigma54 specific transcriptional
regulator [Geobacter sp. M18]
gi|320125265|gb|ADW12825.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M18]
Length = 460
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++TD MPGM G EL++K+KL+ T IP +++++
Sbjct: 49 DLLVTDIKMPGMDGLELLQKVKLKDPT---IPVIMVTA 83
>gi|188587839|ref|YP_001922138.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
gi|188498120|gb|ACD51256.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
Length = 218
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 10 SRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
S+ + DG + F+L + DLI+ D +PGM G EL+KKIK + IP +
Sbjct: 29 SKQLFDGLEAFNLLKEE-------PFDLILMDIMLPGMDGFELMKKIKDLN-----IPVI 76
Query: 70 IISSENILA 78
++++N LA
Sbjct: 77 FLTAKNGLA 85
>gi|402547883|ref|ZP_10844748.1| CheY-like protein [Campylobacter sp. FOBRC14]
gi|401015910|gb|EJP74687.1| CheY-like protein [Campylobacter sp. FOBRC14]
Length = 139
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D++ITD+ MP M G EL+KK++ + + ++P +++++E
Sbjct: 65 IDVLITDWNMPEMNGLELVKKVRAEQ-KYVDMPIIMVTTE 103
>gi|423073047|ref|ZP_17061790.1| response regulator receiver domain protein [Desulfitobacterium
hafniense DP7]
gi|361856182|gb|EHL08113.1| response regulator receiver domain protein [Desulfitobacterium
hafniense DP7]
Length = 326
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
L++TD MPGM+G EL ++I+ Q+++ E+P +I ++ N
Sbjct: 43 LLLTDLMMPGMSGIELTQQIR-QNYSLIELPIIIATARN 80
>gi|154174704|ref|YP_001407722.1| putative chemotaxis protein CheY-like protein [Campylobacter curvus
525.92]
gi|112803634|gb|EAU00978.1| putative Chemotaxis protein CheY-like protein [Campylobacter curvus
525.92]
Length = 139
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D++ITD+ MP M G EL+KK++ + + ++P +++++E
Sbjct: 65 IDVLITDWNMPEMNGLELVKKVRAEQ-KYVDMPIIMVTTE 103
>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
Length = 227
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ Q FR +P +++++
Sbjct: 48 DLIVTDIIMPRMNGYELVRRVRQQP-AFRLLPVILLTA 84
>gi|427740100|ref|YP_007059644.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Rivularia sp. PCC
7116]
gi|427375141|gb|AFY59097.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Rivularia sp. PCC
7116]
Length = 125
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D IITD MPGM+G EL + +K T +++P VI SS+N IDR
Sbjct: 52 DAIITDVVMPGMSGFELCRSLKKNPDT-QKVPIVICSSKN--QEIDR 95
>gi|83647838|ref|YP_436273.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396]
gi|83635881|gb|ABC31848.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396]
Length = 128
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL++ ++ + + +P +++++E
Sbjct: 51 DFLVTDWNMPGMTGIELLQAVRADE-SLKNLPVLMVTAE 88
>gi|325284792|ref|YP_004264255.1| response regulator receiver protein [Deinococcus proteolyticus
MRP]
gi|324316281|gb|ADY27395.1| response regulator receiver protein [Deinococcus proteolyticus
MRP]
Length = 253
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
E++ DLII D MPG++G EL +K+K +R IP +IIS
Sbjct: 39 EQLDSEPTDLIIADVIMPGLSGFELCQKLKADD-RYRHIPLLIIS 82
>gi|301382876|ref|ZP_07231294.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato Max13]
gi|302062798|ref|ZP_07254339.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato K40]
gi|302131297|ref|ZP_07257287.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|422658356|ref|ZP_16720791.1| chemotaxis protein CheY [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331016984|gb|EGH97040.1| chemotaxis protein CheY [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 132
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGMTG +L+++++ + +P +++++
Sbjct: 37 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMTGIDLLRQVRADD-RLKSLPVLMVTA 91
Query: 74 E 74
E
Sbjct: 92 E 92
>gi|251779963|ref|ZP_04822883.1| response regulator [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243084278|gb|EES50168.1| response regulator [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 218
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 10 SRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
S+ + DG + F+L + DLI+ D +PGM G EL+KKIK + IP +
Sbjct: 29 SKQLFDGLEAFNLLKEE-------PFDLILMDIMLPGMDGFELMKKIKDLN-----IPVI 76
Query: 70 IISSENILA 78
++++N LA
Sbjct: 77 FLTAKNGLA 85
>gi|326390489|ref|ZP_08212046.1| response regulator receiver protein [Thermoanaerobacter
ethanolicus JW 200]
gi|325993457|gb|EGD51892.1| response regulator receiver protein [Thermoanaerobacter
ethanolicus JW 200]
Length = 266
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 8 LLSRLMSDG---SDGFDLSPTDTEEVHVLAV-------DLIITDYCMPGMTGCELIKKIK 57
+L RLM+ ++G+D+ T E + V DL+I D +P G E I+K+K
Sbjct: 17 VLIRLMAKNILEAEGYDVETAATAEEAIFKVKNREKLFDLVIVDINLPNQNGFEFIQKLK 76
Query: 58 LQSFTFREIPTVIISSE 74
Q+ ++ IP +I+S +
Sbjct: 77 SQA-EYKNIPVMILSGD 92
>gi|421896665|ref|ZP_16327062.1| nitrate/nitrite response regulator protein [Ralstonia
solanacearum MolK2]
gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia
solanacearum MolK2]
Length = 201
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++ D MPGMTG EL+++I + F EIP V +++
Sbjct: 51 DLVLCDVGMPGMTGFELLERIGTLAPRFAEIPFVFLTA 88
>gi|183220972|ref|YP_001838968.1| chemotaxis protein CheY [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911067|ref|YP_001962622.1| response regulator receiver domain-containing protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775743|gb|ABZ94044.1| Response regulator receiver domain [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779394|gb|ABZ97692.1| Chemotaxis protein CheY [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 121
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+++ AVDLI++D MP M G IKK+K ++ F+ P +++++E
Sbjct: 40 KQLEANAVDLIVSDMNMPNMDGISFIKKVK-ENAKFKFTPIIMLTTE 85
>gi|402850673|ref|ZP_10898865.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Rhodovulum sp. PH10]
gi|402499054|gb|EJW10774.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Rhodovulum sp. PH10]
Length = 122
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 10/63 (15%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKI-KLQSFTFREIPTVIIS 72
+DG+DG + AVD+I+TD MP M G LI+++ KL S +R +P + ++
Sbjct: 33 NDGADGL-------AKAQANAVDMIVTDLNMPVMNGLTLIRELRKLPS--YRGVPIIFLT 83
Query: 73 SEN 75
+E+
Sbjct: 84 TES 86
>gi|357975901|ref|ZP_09139872.1| chemotaxis protein CheY [Sphingomonas sp. KC8]
Length = 106
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG G E +H +A DL+ITD MP M G ELI+ ++ FR P +++S+
Sbjct: 18 NDGEHGL-------ERMHEVAPDLLITDINMPKMDGFELIEAVRGVP-EFRGTPILVLST 69
Query: 74 E 74
E
Sbjct: 70 E 70
>gi|312882563|ref|ZP_07742304.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369963|gb|EFP97474.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Vibrio caribbenthicus ATCC BAA-2122]
Length = 539
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+DLI+TDY MP MTG E++ + K + F +IP +++S + L+ +
Sbjct: 48 IDLILTDYKMPNMTGAEMLIEAKRRGF---DIPAIMLSGQADLSGV 90
>gi|298530465|ref|ZP_07017867.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509839|gb|EFI33743.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 120
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
VD+IITD MP M G ELIK ++ S ++ IP V++++E+
Sbjct: 46 VDMIITDLNMPNMDGIELIKNVRATS-GYKFIPIVMLTTES 85
>gi|410086811|ref|ZP_11283518.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Morganella morganii
SC01]
gi|421493260|ref|ZP_15940617.1| hypothetical protein MU9_1787 [Morganella morganii subsp.
morganii KT]
gi|455738919|ref|YP_007505185.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Morganella morganii
subsp. morganii KT]
gi|400192428|gb|EJO25567.1| hypothetical protein MU9_1787 [Morganella morganii subsp.
morganii KT]
gi|409766645|gb|EKN50735.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Morganella morganii
SC01]
gi|455420482|gb|AGG30812.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Morganella morganii
subsp. morganii KT]
Length = 130
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ + DG D E++ +D ++ D+ MP M G EL+K I+ + IP ++++
Sbjct: 33 IEEAEDGVDA----LEKIRAGQIDFVVADWNMPNMDGLELLKTIRADD-ALKHIPVMMVT 87
Query: 73 S----ENILA 78
+ ENI+A
Sbjct: 88 AEAKKENIIA 97
>gi|424882930|ref|ZP_18306562.1| response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392519293|gb|EIW44025.1| response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 353
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+++ DY MP M G E+I++++ Q + ++P V+I+S+
Sbjct: 47 DVVLVDYLMPEMNGIEMIRRLRRQP-GYEDVPVVMITSQ 84
>gi|407010889|gb|EKE25660.1| two-component hybrid sensor and regulator [uncultured bacterium]
Length = 261
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLIITD MP M G E+I+++KL T ++IP +++++
Sbjct: 187 DLIITDIVMPAMPGDEIIRRLKLDDKT-KDIPVIVLTA 223
>gi|359431726|ref|ZP_09222145.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20652]
gi|357921604|dbj|GAA58394.1| two-component system, chemotaxis family, response regulator CheY
[Pseudoalteromonas sp. BSi20652]
Length = 265
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E+++ DLI+TDY MP M G EL + ++ S ++ IP +++SSE
Sbjct: 184 EQLNNQPFDLIVTDYNMPEMDGRELTEAVR-GSNSYSHIPILMVSSE 229
>gi|218779452|ref|YP_002430770.1| response regulator receiver protein [Desulfatibacillum alkenivorans
AK-01]
gi|218760836|gb|ACL03302.1| Protein with response regulator receiver domain [Desulfatibacillum
alkenivorans AK-01]
Length = 243
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
++V VDL++TD MPG+ G ELI +I+ ++E+P V+ S
Sbjct: 165 LNVEKVDLVVTDIKMPGIHGLELISRIRK---NYKELPIVVCS 204
>gi|28869184|ref|NP_791803.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213967539|ref|ZP_03395687.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato T1]
gi|28852424|gb|AAO55498.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927840|gb|EEB61387.1| chemotaxis protein CheY [Pseudomonas syringae pv. tomato T1]
Length = 124
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ DG P + A D ++TD+ MPGMTG +L+++++ + +P +++++
Sbjct: 29 SEADDGLTALPM----LQSGAFDFLVTDWNMPGMTGIDLLRQVRADD-RLKSLPVLMVTA 83
Query: 74 E 74
E
Sbjct: 84 E 84
>gi|71906778|ref|YP_284365.1| response regulator receiver [Dechloromonas aromatica RCB]
gi|71846399|gb|AAZ45895.1| Response regulator receiver [Dechloromonas aromatica RCB]
Length = 121
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKI-KLQSFTFREIPTVIISSENILAR 79
+ +DL+ITD MPGM G +LIK++ K+ ++ F +P + +++E+ +R
Sbjct: 45 IKIDLLITDLNMPGMNGIDLIKEVRKMPAYKF--VPILFLTTESQQSR 90
>gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551]
gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum
IPO1609]
gi|386335039|ref|YP_006031209.1| nitrate/nitrite response regulator protein [Ralstonia
solanacearum Po82]
gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551]
gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum
IPO1609]
gi|334197489|gb|AEG70673.1| nitrate/nitrite response regulator protein [Ralstonia
solanacearum Po82]
Length = 201
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++ D MPGMTG EL+++I + F EIP V +++
Sbjct: 51 DLVLCDVGMPGMTGFELLERIGTLAPRFAEIPFVFLTA 88
>gi|83593665|ref|YP_427417.1| response regulator receiver domain-containing protein
[Rhodospirillum rubrum ATCC 11170]
gi|386350409|ref|YP_006048657.1| response regulator receiver domain-containing protein
[Rhodospirillum rubrum F11]
gi|83576579|gb|ABC23130.1| Response regulator receiver domain protein (CheY) [Rhodospirillum
rubrum ATCC 11170]
gi|346718845|gb|AEO48860.1| response regulator receiver domain-containing protein
[Rhodospirillum rubrum F11]
Length = 124
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 37 LIITDYCMPGMTGCELIKKIK-LQSFTFREIPTVIISSENILARID 81
LIITD MPGM G +LI+K++ + F F IP +++++E+ ++ D
Sbjct: 50 LIITDIHMPGMNGIDLIRKVRTMAGFQF--IPILVVTTESQQSKRD 93
>gi|241205867|ref|YP_002976963.1| response regulator receiver modulated metal dependent
phosphohydrolase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859757|gb|ACS57424.1| response regulator receiver modulated metal dependent
phosphohydrolase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 353
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+++ DY MP M G E+I++++ Q + ++P V+I+S+
Sbjct: 47 DVVLVDYMMPEMNGIEMIRRLRRQP-GYEDVPVVMITSQ 84
>gi|116253354|ref|YP_769192.1| two-component response regulator transcriptional regulatory
protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115258002|emb|CAK09100.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 353
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D+++ DY MP M G E+I++++ Q + ++P V+I+S+
Sbjct: 47 DVVLVDYMMPEMNGIEMIRRLRRQP-GYEDVPVVMITSQ 84
>gi|423313618|ref|ZP_17291554.1| hypothetical protein HMPREF1058_02166 [Bacteroides vulgatus
CL09T03C04]
gi|392685418|gb|EIY78736.1| hypothetical protein HMPREF1058_02166 [Bacteroides vulgatus
CL09T03C04]
Length = 1386
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1167 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1216
>gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1383
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1164 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1213
>gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|212665861|gb|EEB26433.1| response regulator receiver domain protein [Bacteroides dorei DSM
17855]
gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1386
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1167 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1216
>gi|384419270|ref|YP_005628630.1| two-component system response regulatory protein [Xanthomonas
oryzae pv. oryzicola BLS256]
gi|353462183|gb|AEQ96462.1| two-component system response regulatory protein [Xanthomonas
oryzae pv. oryzicola BLS256]
Length = 130
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG +L++ I+ + + +P +++++E
Sbjct: 51 DFVVTDWNMPGMTGIDLLRNIRADA-KLKHLPVMMVTAE 88
>gi|163792487|ref|ZP_02186464.1| chemotaxis protein CheYIII [alpha proteobacterium BAL199]
gi|159182192|gb|EDP66701.1| chemotaxis protein CheYIII [alpha proteobacterium BAL199]
Length = 190
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
EE+ A+DL++ D+ M GM+G +L++ I+ + I+ S N +AR
Sbjct: 59 EELRATAIDLVVMDWEMEGMSGLQLLQTIRSGKRGINPLMPAIVVSANTIAR 110
>gi|54308133|ref|YP_129153.1| chemotaxis protein CheY [Photobacterium profundum SS9]
gi|90411041|ref|ZP_01219055.1| putative chemotaxis protein CheY [Photobacterium profundum 3TCK]
gi|46912559|emb|CAG19351.1| putative chemotaxis protein CheY [Photobacterium profundum SS9]
gi|90328254|gb|EAS44565.1| putative chemotaxis protein CheY [Photobacterium profundum 3TCK]
Length = 127
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I++ + +P ++I++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKHIRVDE-KLKHLPVLMITAE 88
>gi|423241267|ref|ZP_17222380.1| hypothetical protein HMPREF1065_03003 [Bacteroides dorei CL03T12C01]
gi|392642199|gb|EIY35970.1| hypothetical protein HMPREF1065_03003 [Bacteroides dorei CL03T12C01]
Length = 1386
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1167 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1216
>gi|423231268|ref|ZP_17217671.1| hypothetical protein HMPREF1063_03491 [Bacteroides dorei CL02T00C15]
gi|423246939|ref|ZP_17227991.1| hypothetical protein HMPREF1064_04197 [Bacteroides dorei CL02T12C06]
gi|392628413|gb|EIY22440.1| hypothetical protein HMPREF1063_03491 [Bacteroides dorei CL02T00C15]
gi|392634092|gb|EIY28023.1| hypothetical protein HMPREF1064_04197 [Bacteroides dorei CL02T12C06]
Length = 1386
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1167 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1216
>gi|260909644|ref|ZP_05916341.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
sp. oral taxon 472 str. F0295]
gi|260636255|gb|EEX54248.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
sp. oral taxon 472 str. F0295]
Length = 935
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG E+ L D+I+TD MPG+ G E+ ++I+ T IP ++++++
Sbjct: 713 DGQDGL-------EKAEQLVPDVIVTDLMMPGIDGLEVCRRIRANEVT-SHIPIIVVTAK 764
>gi|302878986|ref|YP_003847550.1| response regulator receiver protein [Gallionella
capsiferriformans ES-2]
gi|302581775|gb|ADL55786.1| response regulator receiver protein [Gallionella
capsiferriformans ES-2]
Length = 129
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG D DT D +++D+ MP MTG EL+++I+ + R +P +++++
Sbjct: 37 EDGVDALKKLRADT-------YDFVVSDWNMPNMTGIELLREIRADT-KLRHLPVLMVTA 88
Query: 74 E 74
E
Sbjct: 89 E 89
>gi|345513773|ref|ZP_08793288.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1386
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1167 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1216
>gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|345518080|ref|ZP_08797538.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1386
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 27 TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
TE + +LA VDLI++D MP M G EL +++K Q F IP ++++++
Sbjct: 1167 TEALEILAKQEVDLIVSDVMMPEMDGMELCRRVKTQ-FETCHIPLILLTAK 1216
>gi|384427814|ref|YP_005637173.1| two-component system response regulator protein [Xanthomonas
campestris pv. raphani 756C]
gi|341936916|gb|AEL07055.1| two-component system response regulator protein [Xanthomonas
campestris pv. raphani 756C]
Length = 130
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG +L++ I+ + + +P +++++E
Sbjct: 51 DFVVTDWNMPGMTGIDLLRNIRADA-KLKHLPVMMVTAE 88
>gi|57168004|ref|ZP_00367143.1| chemotaxis regulatory protein Cj1118c [Campylobacter coli RM2228]
gi|305431845|ref|ZP_07401012.1| chemotaxis response regulator CheY [Campylobacter coli JV20]
gi|419536281|ref|ZP_14075764.1| chemotaxis regulatory protein [Campylobacter coli 111-3]
gi|419538556|ref|ZP_14077910.1| chemotaxis regulatory protein [Campylobacter coli 90-3]
gi|419540901|ref|ZP_14080127.1| chemotaxis regulatory protein [Campylobacter coli Z163]
gi|419542261|ref|ZP_14081390.1| chemotaxis regulatory protein [Campylobacter coli 2548]
gi|419544355|ref|ZP_14083318.1| chemotaxis regulatory protein [Campylobacter coli 2553]
gi|419546700|ref|ZP_14085449.1| chemotaxis regulatory protein [Campylobacter coli 2680]
gi|419548363|ref|ZP_14086990.1| chemotaxis regulatory protein [Campylobacter coli 2685]
gi|419551244|ref|ZP_14089705.1| chemotaxis regulatory protein [Campylobacter coli 2688]
gi|419553051|ref|ZP_14091324.1| chemotaxis regulatory protein [Campylobacter coli 2692]
gi|419554582|ref|ZP_14092719.1| chemotaxis regulatory protein [Campylobacter coli 2698]
gi|419556172|ref|ZP_14094163.1| chemotaxis regulatory protein [Campylobacter coli 84-2]
gi|419558698|ref|ZP_14096549.1| chemotaxis regulatory protein [Campylobacter coli 80352]
gi|419561159|ref|ZP_14098783.1| chemotaxis regulatory protein [Campylobacter coli 86119]
gi|419562729|ref|ZP_14100227.1| chemotaxis regulatory protein [Campylobacter coli 1091]
gi|419564141|ref|ZP_14101525.1| chemotaxis regulatory protein [Campylobacter coli 1098]
gi|419565557|ref|ZP_14102830.1| chemotaxis regulatory protein [Campylobacter coli 1148]
gi|419567906|ref|ZP_14105056.1| chemotaxis regulatory protein [Campylobacter coli 1417]
gi|419570291|ref|ZP_14107339.1| chemotaxis regulatory protein [Campylobacter coli 7--1]
gi|419572221|ref|ZP_14109148.1| chemotaxis regulatory protein [Campylobacter coli 132-6]
gi|419574210|ref|ZP_14110973.1| chemotaxis regulatory protein [Campylobacter coli 1891]
gi|419575498|ref|ZP_14112186.1| chemotaxis regulatory protein [Campylobacter coli 1909]
gi|419578241|ref|ZP_14114765.1| chemotaxis regulatory protein [Campylobacter coli 59-2]
gi|419579619|ref|ZP_14116025.1| chemotaxis regulatory protein [Campylobacter coli 1948]
gi|419580490|ref|ZP_14116813.1| chemotaxis regulatory protein [Campylobacter coli 1957]
gi|419582619|ref|ZP_14118815.1| chemotaxis regulatory protein [Campylobacter coli 1961]
gi|419584611|ref|ZP_14120678.1| chemotaxis regulatory protein [Campylobacter coli 202/04]
gi|419586472|ref|ZP_14122433.1| chemotaxis regulatory protein [Campylobacter coli 67-8]
gi|419589400|ref|ZP_14125197.1| chemotaxis regulatory protein [Campylobacter coli 317/04]
gi|419590535|ref|ZP_14125902.1| chemotaxis regulatory protein [Campylobacter coli 37/05]
gi|419592982|ref|ZP_14128219.1| chemotaxis regulatory protein [Campylobacter coli LMG 9854]
gi|419595466|ref|ZP_14130567.1| chemotaxis regulatory protein [Campylobacter coli LMG 23336]
gi|419597087|ref|ZP_14132076.1| chemotaxis regulatory protein [Campylobacter coli LMG 23341]
gi|419598643|ref|ZP_14133522.1| chemotaxis regulatory protein [Campylobacter coli LMG 23342]
gi|419601086|ref|ZP_14135817.1| chemotaxis regulatory protein [Campylobacter coli LMG 23344]
gi|419602535|ref|ZP_14137113.1| chemotaxis regulatory protein [Campylobacter coli 151-9]
gi|419603836|ref|ZP_14138314.1| chemotaxis regulatory protein [Campylobacter coli LMG 9853]
gi|419607075|ref|ZP_14141421.1| chemotaxis regulatory protein [Campylobacter coli LMG 9860]
gi|419608907|ref|ZP_14143085.1| chemotaxis regulatory protein [Campylobacter coli H6]
gi|419610756|ref|ZP_14144811.1| chemotaxis regulatory protein [Campylobacter coli H8]
gi|419612383|ref|ZP_14146262.1| chemotaxis regulatory protein [Campylobacter coli H9]
gi|419614000|ref|ZP_14147792.1| chemotaxis regulatory protein [Campylobacter coli H56]
gi|419617243|ref|ZP_14150865.1| chemotaxis regulatory protein [Campylobacter coli Z156]
gi|57020378|gb|EAL57047.1| chemotaxis regulatory protein Cj1118c [Campylobacter coli RM2228]
gi|304444929|gb|EFM37575.1| chemotaxis response regulator CheY [Campylobacter coli JV20]
gi|380515680|gb|EIA41834.1| chemotaxis regulatory protein [Campylobacter coli Z163]
gi|380517536|gb|EIA43648.1| chemotaxis regulatory protein [Campylobacter coli 90-3]
gi|380518674|gb|EIA44767.1| chemotaxis regulatory protein [Campylobacter coli 111-3]
gi|380521913|gb|EIA47618.1| chemotaxis regulatory protein [Campylobacter coli 2680]
gi|380523619|gb|EIA49261.1| chemotaxis regulatory protein [Campylobacter coli 2548]
gi|380525367|gb|EIA50894.1| chemotaxis regulatory protein [Campylobacter coli 2553]
gi|380527534|gb|EIA52901.1| chemotaxis regulatory protein [Campylobacter coli 2685]
gi|380528838|gb|EIA54056.1| chemotaxis regulatory protein [Campylobacter coli 2688]
gi|380529811|gb|EIA54935.1| chemotaxis regulatory protein [Campylobacter coli 2692]
gi|380532429|gb|EIA57408.1| chemotaxis regulatory protein [Campylobacter coli 2698]
gi|380535029|gb|EIA59766.1| chemotaxis regulatory protein [Campylobacter coli 84-2]
gi|380536194|gb|EIA60841.1| chemotaxis regulatory protein [Campylobacter coli 86119]
gi|380538851|gb|EIA63275.1| chemotaxis regulatory protein [Campylobacter coli 80352]
gi|380540041|gb|EIA64367.1| chemotaxis regulatory protein [Campylobacter coli 1091]
gi|380543068|gb|EIA67290.1| chemotaxis regulatory protein [Campylobacter coli 1098]
gi|380546948|gb|EIA70882.1| chemotaxis regulatory protein [Campylobacter coli 1417]
gi|380547538|gb|EIA71457.1| chemotaxis regulatory protein [Campylobacter coli 7--1]
gi|380548798|gb|EIA72695.1| chemotaxis regulatory protein [Campylobacter coli 1148]
gi|380550010|gb|EIA73723.1| chemotaxis regulatory protein [Campylobacter coli 1891]
gi|380551613|gb|EIA75200.1| chemotaxis regulatory protein [Campylobacter coli 132-6]
gi|380553458|gb|EIA76971.1| chemotaxis regulatory protein [Campylobacter coli 1909]
gi|380555433|gb|EIA78755.1| chemotaxis regulatory protein [Campylobacter coli 59-2]
gi|380556935|gb|EIA80165.1| chemotaxis regulatory protein [Campylobacter coli 1948]
gi|380560694|gb|EIA83758.1| chemotaxis regulatory protein [Campylobacter coli 1957]
gi|380563713|gb|EIA86542.1| chemotaxis regulatory protein [Campylobacter coli 202/04]
gi|380564732|gb|EIA87529.1| chemotaxis regulatory protein [Campylobacter coli 1961]
gi|380566034|gb|EIA88726.1| chemotaxis regulatory protein [Campylobacter coli 67-8]
gi|380567565|gb|EIA90078.1| chemotaxis regulatory protein [Campylobacter coli 317/04]
gi|380570690|gb|EIA93108.1| chemotaxis regulatory protein [Campylobacter coli 37/05]
gi|380571486|gb|EIA93873.1| chemotaxis regulatory protein [Campylobacter coli LMG 9854]
gi|380573437|gb|EIA95580.1| chemotaxis regulatory protein [Campylobacter coli LMG 23336]
gi|380574362|gb|EIA96466.1| chemotaxis regulatory protein [Campylobacter coli LMG 23341]
gi|380577027|gb|EIA99065.1| chemotaxis regulatory protein [Campylobacter coli LMG 23342]
gi|380581143|gb|EIB02874.1| chemotaxis regulatory protein [Campylobacter coli 151-9]
gi|380581553|gb|EIB03274.1| chemotaxis regulatory protein [Campylobacter coli LMG 9853]
gi|380582220|gb|EIB03898.1| chemotaxis regulatory protein [Campylobacter coli LMG 23344]
gi|380584812|gb|EIB06209.1| chemotaxis regulatory protein [Campylobacter coli H6]
gi|380585871|gb|EIB07197.1| chemotaxis regulatory protein [Campylobacter coli LMG 9860]
gi|380589374|gb|EIB10438.1| chemotaxis regulatory protein [Campylobacter coli H8]
gi|380590492|gb|EIB11502.1| chemotaxis regulatory protein [Campylobacter coli H9]
gi|380593349|gb|EIB14181.1| chemotaxis regulatory protein [Campylobacter coli Z156]
gi|380593466|gb|EIB14294.1| chemotaxis regulatory protein [Campylobacter coli H56]
Length = 130
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+ ++ITD+ MP M G EL+KK++ + + ++P +++++E A +
Sbjct: 47 IKILITDWNMPEMNGLELVKKVRAEK-KYEDMPIIMVTTEGGKAEV 91
>gi|71282029|ref|YP_268262.1| chemotaxis protein CheY [Colwellia psychrerythraea 34H]
gi|71147769|gb|AAZ28242.1| chemotaxis protein CheY [Colwellia psychrerythraea 34H]
Length = 127
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + IP ++I++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADA-NLSHIPVLLITAE 88
>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
psychrerythraea 34H]
gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
psychrerythraea 34H]
Length = 233
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
++H DLI+ D+ +PG TG L KK+K +T R IP +++++ +
Sbjct: 41 KIHEPYPDLILLDWMLPGGTGVSLAKKLKQNEYT-RNIPIIMLTARS 86
>gi|297806747|ref|XP_002871257.1| hypothetical protein ARALYDRAFT_325337 [Arabidopsis lyrata subsp.
lyrata]
gi|297317094|gb|EFH47516.1| hypothetical protein ARALYDRAFT_325337 [Arabidopsis lyrata subsp.
lyrata]
Length = 625
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MP M G +L K+I + F +P +++SS+
Sbjct: 70 IDLIITDYYMPSMNGLQLKKQITQE---FGNLPVLVMSSD 106
>gi|448656140|ref|ZP_21682392.1| multi-sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
gi|445763770|gb|EMA14945.1| multi-sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
Length = 487
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 8 LLSRLMSDGSDGFDL----SPTDT-EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
L S + DGF + PTD E+V + VD I++DY MP + G E ++ I+
Sbjct: 35 LTSTFLEREKDGFSVITHADPTDAIEQVDQVDVDAIVSDYDMPSLNGLEFLEAIRED--- 91
Query: 63 FREIPTVIIS---SENILAR 79
++ IP ++ + SE+I +
Sbjct: 92 YKNIPFILFTGKGSEDIASE 111
>gi|83720536|ref|YP_443677.1| chemotaxis response regulator [Burkholderia thailandensis E264]
gi|167582717|ref|ZP_02375591.1| chemotaxis response regulator [Burkholderia thailandensis TXDOH]
gi|167620831|ref|ZP_02389462.1| chemotaxis response regulator [Burkholderia thailandensis Bt4]
gi|83654361|gb|ABC38424.1| chemotaxis response regulator [Burkholderia thailandensis E264]
Length = 126
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG G D++ DL++TD+ MP G ELI ++ QS + P +++++
Sbjct: 33 SDGEVGLDVA-------MATPFDLVLTDHYMPKKNGLELIAALRAQS-AYEATPILVLTT 84
Query: 74 EN 75
EN
Sbjct: 85 EN 86
>gi|408480686|ref|ZP_11186905.1| protein CheY [Pseudomonas sp. R81]
Length = 128
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ R +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLRGLPVLMVTAE 88
>gi|406658997|ref|ZP_11067137.1| DNA-binding response regulator [Streptococcus iniae 9117]
gi|405579212|gb|EKB53326.1| DNA-binding response regulator [Streptococcus iniae 9117]
Length = 443
Score = 38.5 bits (88), Expect = 0.54, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIK 57
AVD+++TD CMP MTG E+I K+K
Sbjct: 50 AVDIVLTDVCMPEMTGLEMITKMK 73
>gi|225850293|ref|YP_002730527.1| chemotactic response regulator CheY [Persephonella marina EX-H1]
gi|225645749|gb|ACO03935.1| chemotactic response regulator CheY [Persephonella marina EX-H1]
Length = 131
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D +ITD+ MP MTG EL+++I+ + + +P +++++E
Sbjct: 54 DFVITDWNMPNMTGLELVQEIR-KDENLKHLPVLMVTAE 91
>gi|148265667|ref|YP_001232373.1| two component sigma-54 specific Fis family transcriptional
regulator [Geobacter uraniireducens Rf4]
gi|146399167|gb|ABQ27800.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter uraniireducens Rf4]
Length = 471
Score = 38.5 bits (88), Expect = 0.54, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
E++ A DL+ITD MPGM G E++K IK+ E+P +II+
Sbjct: 41 EKLQAEAFDLLITDLKMPGMGGMEVLKSIKVLQ---PEMPVIIIT 82
>gi|448643076|ref|ZP_21678796.1| multi-sensor signal transduction histidine kinase [Haloarcula
sinaiiensis ATCC 33800]
gi|445758613|gb|EMA09917.1| multi-sensor signal transduction histidine kinase [Haloarcula
sinaiiensis ATCC 33800]
Length = 489
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 8 LLSRLMSDGSDGFDL----SPTDT-EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
L S + DGF + PTD E+V + VD I++DY MP + G E ++ I+
Sbjct: 37 LTSTFLEREKDGFSVITHADPTDAIEQVDQVDVDAIVSDYDMPSLNGLEFLEAIRED--- 93
Query: 63 FREIPTVIIS---SENILAR 79
++ IP ++ + SE+I +
Sbjct: 94 YKNIPFILFTGKGSEDIASE 113
>gi|407002637|gb|EKE19340.1| GAF sensor hybrid histidine kinase [uncultured bacterium]
Length = 265
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
DLIITD MP M+G E+I+KIKL ++ P +++S+ I
Sbjct: 191 DLIITDMVMPAMSGDEIIRKIKLDDKN-KDTPIIVLSASLI 230
>gi|334131795|ref|ZP_08505557.1| Chemotaxis protein CheY [Methyloversatilis universalis FAM5]
gi|333443268|gb|EGK71233.1| Chemotaxis protein CheY [Methyloversatilis universalis FAM5]
Length = 132
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+++ D ++TD+ MP MTG EL++ I+ + + +P ++I++E
Sbjct: 44 QKLKAAEFDFVVTDWNMPNMTGIELLRAIRADA-ALKSLPVLMITAE 89
>gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia
pickettii 12J]
gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia
pickettii 12J]
gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia
pickettii 12J]
gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia
pickettii 12J]
Length = 201
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A DL++ D MPGMTG EL+++++ + + EIP V +++
Sbjct: 49 APDLVLCDVGMPGMTGFELLEQLRTLAPRYAEIPFVFLTA 88
>gi|186473153|ref|YP_001860495.1| response regulator receiver protein [Burkholderia phymatum STM815]
gi|184195485|gb|ACC73449.1| response regulator receiver protein [Burkholderia phymatum STM815]
Length = 706
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSF--TFREIPTVIISS 73
VDL+ITD MPGM+G EL ++++ SF + E+P +++S+
Sbjct: 506 VDLLITDLQMPGMSGVELARRVR-ASFGGSGHEVPVILLSA 545
>gi|74317308|ref|YP_315048.1| LuxR family transcriptional regulator [Thiobacillus denitrificans
ATCC 25259]
gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family
[Thiobacillus denitrificans ATCC 25259]
Length = 209
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++ +DGF++ E++ A DL+ D MP ++G +LIK+I+L T +P +++S
Sbjct: 31 AEAADGFEV----LEKIRKEAFDLVCLDLSMPNLSGIDLIKRIRLDCTT---LPILVLSM 83
Query: 74 EN 75
N
Sbjct: 84 HN 85
>gi|358450024|ref|ZP_09160498.1| two component transcriptional regulator [Marinobacter
manganoxydans MnI7-9]
gi|357225867|gb|EHJ04358.1| two component transcriptional regulator [Marinobacter
manganoxydans MnI7-9]
Length = 230
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L D E H L VD L++ D+ +PG +G EL +++K + T +IP ++++++
Sbjct: 31 LEAADAREAHALIVDKHPDLVLLDWMLPGTSGVELARRLKKEEATA-DIPIIMLTAK 86
>gi|332530116|ref|ZP_08406066.1| multi-sensor signal transduction histidine kinase [Hylemonella
gracilis ATCC 19624]
gi|332040589|gb|EGI76965.1| multi-sensor signal transduction histidine kinase [Hylemonella
gracilis ATCC 19624]
Length = 487
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 7 VLLSRLMSDGSDGFDLSPTDTEEVHV-----LAVDLIITDYCMPGMTGCELIKKIKLQSF 61
VLL R +G+++S D E V A DLI+ D +PGM G E+ + +K QS
Sbjct: 27 VLLER------EGYEVSSADNGEDGVKRATETAPDLILLDVMLPGMDGYEVCRWLK-QSE 79
Query: 62 TFREIPTVIISSEN 75
R+IP + +S+++
Sbjct: 80 ALRDIPVIFMSAQD 93
>gi|411120611|ref|ZP_11392983.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Oscillatoriales cyanobacterium JSC-12]
gi|410709280|gb|EKQ66795.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Oscillatoriales cyanobacterium JSC-12]
Length = 210
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
D+I+ D CMPGM G E+ +++K + T REIP + +S+
Sbjct: 55 DVILLDICMPGMDGYEVCRELKSEPQT-REIPIIFLSA 91
>gi|298245348|ref|ZP_06969154.1| response regulator receiver protein [Ktedonobacter racemifer DSM
44963]
gi|297552829|gb|EFH86694.1| response regulator receiver protein [Ktedonobacter racemifer DSM
44963]
Length = 136
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
SDG PT + L DL I DY +P M G EL ++++L+ ++IP +IIS
Sbjct: 42 ASDG----PTTLKFTEHLKPDLFILDYWLPTMNGIELYERLRLRK-ELQDIPVIIIS 93
>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 245
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ Q FR +P +++++
Sbjct: 66 DLIVTDIVMPRMNGYELVRRVRQQP-PFRLLPVILLTA 102
>gi|89094260|ref|ZP_01167202.1| chemotaxis protein CheY/response regulator receiver domain protein
[Neptuniibacter caesariensis]
gi|89081515|gb|EAR60745.1| chemotaxis protein CheY/response regulator receiver domain protein
[Neptuniibacter caesariensis]
Length = 264
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DGS+ L P DL++TDY MP + G +L + I+ S + +P ++++SE
Sbjct: 177 DGSEAMQLLPN--------GFDLVVTDYNMPEVNGLQLAEYIR-SSIDYSHLPIMMVTSE 227
Query: 75 NILARI 80
+ A +
Sbjct: 228 SSHAHL 233
>gi|87121077|ref|ZP_01076968.1| phosphate regulon transcriptional regulatory protein PhoB
[Marinomonas sp. MED121]
gi|86163569|gb|EAQ64843.1| phosphate regulon transcriptional regulatory protein PhoB
[Marinomonas sp. MED121]
Length = 214
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D+ MPG +G EL +++K ++ T EIP +++++++
Sbjct: 32 DLILVDWMMPGGSGIELTRRLKKEALTA-EIPVIMLTAKS 70
>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
VT8]
gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
[Marinobacter aquaeolei VT8]
Length = 230
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L D E H L +D LI+ D+ +PG +G EL +++K + T +IP ++++++
Sbjct: 31 LEAADAREAHALIIDKQPDLILLDWMLPGTSGVELARRLKKEEATA-DIPIIMLTAK 86
>gi|58582245|ref|YP_201261.1| chemotaxis protein [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|78047532|ref|YP_363707.1| chemotaxis response regulator CheY [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|188576808|ref|YP_001913737.1| chemotaxis protein CheY [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188577001|ref|YP_001913930.1| chemotaxis protein CheY [Xanthomonas oryzae pv. oryzae PXO99A]
gi|289670574|ref|ZP_06491649.1| chemotaxis response regulator CheY [Xanthomonas campestris pv.
musacearum NCPPB 4381]
gi|346724855|ref|YP_004851524.1| chemotaxis response regulator CheY [Xanthomonas axonopodis pv.
citrumelo F1]
gi|390991843|ref|ZP_10262097.1| chemotaxis protein CheY [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418519243|ref|ZP_13085345.1| chemotaxis response regulator CheY [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418523538|ref|ZP_13089548.1| chemotaxis response regulator CheY [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|58426839|gb|AAW75876.1| chemotaxis protein [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|78035962|emb|CAJ23653.1| chemotaxis response regulator CheY [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|188521260|gb|ACD59205.1| chemotaxis response regulator CheY [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521453|gb|ACD59398.1| chemotaxis response regulator CheY [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|346649602|gb|AEO42226.1| chemotaxis response regulator CheY [Xanthomonas axonopodis pv.
citrumelo F1]
gi|372553444|emb|CCF69072.1| chemotaxis protein CheY [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|410699793|gb|EKQ58394.1| chemotaxis response regulator CheY [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700431|gb|EKQ58986.1| chemotaxis response regulator CheY [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 130
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG +L++ I+ + + +P +++++E
Sbjct: 51 DFVVTDWNMPGMTGIDLLRNIRADA-KLKHLPVMMVTAE 88
>gi|334137368|ref|ZP_08510806.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
gi|333605141|gb|EGL16517.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
Length = 1040
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
++DL+I D+ MPGM+G EL + I+ + + E+P +++++ ++
Sbjct: 746 SIDLVIADWMMPGMSGLELCRAIRAR-LSLAELPVLLLTARSL 787
>gi|325103808|ref|YP_004273462.1| response regulator receiver protein [Pedobacter saltans DSM 12145]
gi|324972656|gb|ADY51640.1| response regulator receiver protein [Pedobacter saltans DSM 12145]
Length = 129
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 17 SDGFD-LSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
S+GFD L+ D+ + DLII+D MP G + ++ +K+ + +REIP +++S +
Sbjct: 40 SNGFDALNWLDSGNIP----DLIISDLEMPYFDGSDFLRAVKVSGY-YREIPIIVLSGSS 94
Query: 76 ILARID 81
L I+
Sbjct: 95 TLEEIE 100
>gi|334119220|ref|ZP_08493307.1| PAS/PAC sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333458691|gb|EGK87308.1| PAS/PAC sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1871
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG +G+ E+V + DLI+TD MP + G ELIK+++ +S F++I +I+SS
Sbjct: 1698 NDGQEGW-------EKVLEVEPDLIVTDLLMPELDGFELIKRVR-ESENFKDI-IIIVSS 1748
Query: 74 ENIL 77
++
Sbjct: 1749 ASVF 1752
>gi|224536835|ref|ZP_03677374.1| hypothetical protein BACCELL_01711 [Bacteroides cellulosilyticus DSM
14838]
gi|224521557|gb|EEF90662.1| hypothetical protein BACCELL_01711 [Bacteroides cellulosilyticus DSM
14838]
Length = 1435
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++I++D MP MTG E++KK++ ++T IP V++SS+
Sbjct: 1218 NMIVSDVVMPEMTGIEMVKKLQANTYTC-HIPIVLLSSK 1255
>gi|444378014|ref|ZP_21177219.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Enterovibrio sp.
AK16]
gi|443677816|gb|ELT84492.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Enterovibrio sp.
AK16]
Length = 122
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGM G +L+K I+ + +P ++I++E
Sbjct: 45 GIDFVVTDWNMPGMQGIDLLKNIRADD-ELKHLPVLMITAE 84
>gi|386288719|ref|ZP_10065859.1| response regulator receiver protein [gamma proteobacterium BDW918]
gi|385278274|gb|EIF42246.1| response regulator receiver protein [gamma proteobacterium BDW918]
Length = 152
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
++DG + ++ +E+ + L++ D MP M G ELI++I+ S REI V+ +
Sbjct: 43 VADGVEALEVLRGQHKEIQLTPARLLLVDLNMPRMGGLELIQQIRADSELHREIVFVLTT 102
Query: 73 SE---NILARID 81
S +ILA D
Sbjct: 103 SSSDTDILAAYD 114
>gi|330808236|ref|YP_004352698.1| chemotaxis protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376344|gb|AEA67694.1| Chemotaxis protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 127
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+H D ++TD+ MPGMTG +L+++++ + +P +++++E
Sbjct: 45 LHSGNFDFLVTDWNMPGMTGIDLLRQVRADE-KLKHLPVLMVTAE 88
>gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 710
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 TTTNGVLLSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIK 57
T N VL+SRL+ FDL + + + DL+ITD MPGM G EL + I+
Sbjct: 593 TKLNLVLMSRLLEKHGLAFDLVGSGDDALDRFESGHYDLVITDIHMPGMDGTELTRHIR 651
>gi|127512315|ref|YP_001093512.1| response regulator receiver protein [Shewanella loihica PV-4]
gi|126637610|gb|ABO23253.1| response regulator receiver protein [Shewanella loihica PV-4]
Length = 127
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + IP +++++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADD-NLKHIPVLMVTAE 88
>gi|21231353|ref|NP_637270.1| chemotaxis protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66768594|ref|YP_243356.1| chemotaxis protein [Xanthomonas campestris pv. campestris str.
8004]
gi|188991594|ref|YP_001903604.1| chemotaxis response regulator [Xanthomonas campestris pv.
campestris str. B100]
gi|325917850|ref|ZP_08180028.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xanthomonas vesicatoria ATCC
35937]
gi|21113014|gb|AAM41194.1| chemotaxis protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573926|gb|AAY49336.1| chemotaxis protein [Xanthomonas campestris pv. campestris str.
8004]
gi|167733354|emb|CAP51555.1| chemotaxis response regulator [Xanthomonas campestris pv.
campestris]
gi|325535934|gb|EGD07752.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xanthomonas vesicatoria ATCC
35937]
Length = 126
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG +L++ I+ + + +P +++++E
Sbjct: 47 DFVVTDWNMPGMTGIDLLRNIRADA-KLKHLPVMMVTAE 84
>gi|387815884|ref|YP_005431377.1| response regulator in two-component regulatory system with PhoR
(or CreC), regulation of Pi uptake (OmpR family)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381340907|emb|CCG96954.1| response regulator in two-component regulatory system with PhoR
(or CreC), regulation of Pi uptake (OmpR family)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 233
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L D E H L +D LI+ D+ +PG +G EL +++K + T +IP ++++++
Sbjct: 34 LEAADAREAHALIIDKQPDLILLDWMLPGTSGVELARRLKKEEATA-DIPIIMLTAK 89
>gi|187930859|ref|YP_001901345.1| LuxR family two component transcriptional regulator [Ralstonia
pickettii 12J]
gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia
pickettii 12D]
gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia
pickettii 12J]
gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia
pickettii 12D]
Length = 201
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A DL++ D MPGMTG EL+++++ + + EIP V +++
Sbjct: 49 APDLVLCDVGMPGMTGFELLEQLRTLAPRYAEIPFVFLTA 88
>gi|119775414|ref|YP_928154.1| response regulator receiver protein [Shewanella amazonensis SB2B]
gi|119767914|gb|ABM00485.1| response regulator receiver protein [Shewanella amazonensis SB2B]
Length = 127
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + IP +++++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADE-NLKHIPVLMVTAE 88
>gi|297569516|ref|YP_003690860.1| response regulator receiver protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925431|gb|ADH86241.1| response regulator receiver protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 387
Score = 38.1 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++G D + L +D L VD II+DY MP +G EL+ ++ T R IP ++I++
Sbjct: 41 ANGRDAWKLLQSDN-----LQVDFIISDYHMPHASGTELLNLLRSSRRT-RHIPFLMITA 94
Query: 74 E 74
E
Sbjct: 95 E 95
>gi|428314761|ref|YP_007150945.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Microcoleus sp. PCC
7113]
gi|428256144|gb|AFZ22101.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Microcoleus sp. PCC
7113]
Length = 125
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D+IITD MPGM+G EL +++K T ++P VI SS++ IDR
Sbjct: 52 DVIITDVVMPGMSGFELCRRLKTHPDT-EKVPIVICSSKD--QEIDR 95
>gi|74317643|ref|YP_315383.1| response regulator receiver domain-containing protein
[Thiobacillus denitrificans ATCC 25259]
gi|74057138|gb|AAZ97578.1| Response regulator receiver domain protein (CheY) [Thiobacillus
denitrificans ATCC 25259]
Length = 120
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG ++ VDL++TD MPGM G LIK ++ + ++ +P +++++E
Sbjct: 33 DGEDGL-------KKAKQQKVDLVLTDQNMPGMDGLTLIKALRGMA-NYKSVPILMLTTE 84
Query: 75 N 75
+
Sbjct: 85 S 85
>gi|32265521|ref|NP_859553.1| two-component response regulator family protein [Helicobacter
hepaticus ATCC 51449]
gi|32261569|gb|AAP76619.1| two-component response regulator family protein [Helicobacter
hepaticus ATCC 51449]
Length = 224
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DL++TD MP M G ELI I+ S+T ++P VI ++
Sbjct: 53 IDLVLTDILMPKMNGIELINAIR-NSYTHPDVPVVITTAH 91
>gi|410663066|ref|YP_006915437.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
gi|409025423|gb|AFU97707.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
Length = 127
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG EL+K+++ +P +++++E
Sbjct: 51 DFLVTDWNMPGMTGIELLKQVRADE-KLASLPVLMVTAE 88
>gi|339018425|ref|ZP_08644561.1| two component response regulator PhoB [Acetobacter tropicalis
NBRC 101654]
gi|338752508|dbj|GAA07865.1| two component response regulator PhoB [Acetobacter tropicalis
NBRC 101654]
Length = 230
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
RL +DG D E++ DL++ D+ +PG++G E+ ++++ Q T R +P ++
Sbjct: 32 RLAADGQDAL-------EQIARRMPDLVLLDWMLPGVSGIEVCRRLREQPKT-RTLPVIM 83
Query: 71 ISS 73
+S+
Sbjct: 84 LSA 86
>gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
5_7_47FAA]
gi|404395641|ref|ZP_10987442.1| hypothetical protein HMPREF0989_00401 [Ralstonia sp. 5_2_56FAA]
gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
5_7_47FAA]
gi|348616396|gb|EGY65898.1| hypothetical protein HMPREF0989_00401 [Ralstonia sp. 5_2_56FAA]
Length = 201
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
A DL++ D MPGMTG EL+++++ + + EIP V +++
Sbjct: 49 APDLVLCDVGMPGMTGFELLEQLRTLAPRYAEIPFVFLTA 88
>gi|410477817|ref|YP_006765454.1| chemotaxis regulator protein CheY [Leptospirillum ferriphilum
ML-04]
gi|124516294|gb|EAY57802.1| putative response regulator receiver protein (CheY)
[Leptospirillum rubarum]
gi|406773069|gb|AFS52494.1| putative chemotaxis regulator protein CheY [Leptospirillum
ferriphilum ML-04]
Length = 126
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG FD ++ D +++D+ MP MTG +L++K++ + T + +P +++++
Sbjct: 36 EDGQKAFDRLMSEK-------FDFVVSDWNMPNMTGIDLLRKVRAEP-TLKHLPFLMVTA 87
Query: 74 E 74
E
Sbjct: 88 E 88
>gi|119472336|ref|ZP_01614475.1| putative two domain protein: response regulator receiver domain
protein [Alteromonadales bacterium TW-7]
gi|119444959|gb|EAW26256.1| putative two domain protein: response regulator receiver domain
protein [Alteromonadales bacterium TW-7]
Length = 287
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E+++ + DLI+TDY MP M G EL + ++ S + IP +++SSE
Sbjct: 206 EKLNEQSFDLIVTDYNMPEMDGRELTETVR-GSNAYSHIPILMVSSE 251
>gi|423312321|ref|ZP_17290258.1| hypothetical protein HMPREF1058_00870 [Bacteroides vulgatus
CL09T03C04]
gi|392688805|gb|EIY82089.1| hypothetical protein HMPREF1058_00870 [Bacteroides vulgatus
CL09T03C04]
Length = 1319
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+G + DL + L DL+I+D MP M G EL +KIK Q+F +P V++++
Sbjct: 1097 SNGKEALDL-------LSELMPDLVISDVMMPVMDGMELCRKIK-QNFRTSHLPVVLLTA 1148
Query: 74 E 74
+
Sbjct: 1149 K 1149
>gi|345864640|ref|ZP_08816838.1| nitrogen regulation protein NR(I) [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124173|gb|EGW54055.1| nitrogen regulation protein NR(I) [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 468
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D+I++D MPGM G EL+++I L+ F E+P +I+++ + L
Sbjct: 50 DVIVSDIRMPGMDGLELLERINLR---FPELPVIIMTAHSDL 88
>gi|260772379|ref|ZP_05881295.1| chemotaxis regulator CheY [Vibrio metschnikovii CIP 69.14]
gi|260611518|gb|EEX36721.1| chemotaxis regulator CheY [Vibrio metschnikovii CIP 69.14]
Length = 111
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + + +P ++I++E
Sbjct: 36 DFVVTDWNMPGMQGIDLLKNIRADA-ELKHLPVLMITAE 73
>gi|189465197|ref|ZP_03013982.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM
17393]
gi|189437471|gb|EDV06456.1| conserved hypothetical protein TIGR03982 [Bacteroides intestinalis
DSM 17393]
Length = 1357
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLIITD MP + G LIK++K T IP VI+S++N
Sbjct: 1143 DLIITDIMMPKIDGITLIKQLKSNKHTM-HIPLVILSAKN 1181
>gi|15614275|ref|NP_242578.1| CheA activity modulator protein [Bacillus halodurans C-125]
gi|10174329|dbj|BAB05431.1| modulation of CheA activity in response to attractants (chemotaxis
protein) [Bacillus halodurans C-125]
Length = 298
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVL-AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
+G + F + EE + VDL+ITD MP M G L KKIK Q +P VI
Sbjct: 200 FFENGEEAFAYLNHEKEEGTLFDNVDLVITDVEMPQMDGLHLTKKIK-QDEVMGNVPVVI 258
Query: 71 ISS 73
SS
Sbjct: 259 FSS 261
>gi|37680647|ref|NP_935256.1| chemotaxis protein CheY [Vibrio vulnificus YJ016]
gi|37199395|dbj|BAC95227.1| chemotaxis protein CheY [Vibrio vulnificus YJ016]
Length = 130
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + + +P ++I++E
Sbjct: 55 DFVVTDWNMPGMQGIDLLKNIRADA-ELKHLPVLMITAE 92
>gi|413960362|ref|ZP_11399592.1| CheY chemotaxis protein [Burkholderia sp. SJ98]
gi|413932139|gb|EKS71424.1| CheY chemotaxis protein [Burkholderia sp. SJ98]
Length = 153
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILARID 81
E++ DL+ITD+ MP M G L+++I+ E+P +++++ EN+LA I+
Sbjct: 50 EKLRTQQFDLVITDWNMPNMDGLTLLQEIRKSDLA--ELPVLMVTAEKRRENVLAAIN 105
>gi|343511279|ref|ZP_08748453.1| response regulator receiver protein [Vibrio scophthalmi LMG
19158]
gi|342798612|gb|EGU34211.1| response regulator receiver protein [Vibrio scophthalmi LMG
19158]
Length = 508
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+VD+I++D+ MP MTG EL+KK++ QS + +P ++++
Sbjct: 60 SVDIIVSDWKMPKMTGLELLKKVR-QSKAHKSVPFIMLT 97
>gi|343516480|ref|ZP_08753515.1| response regulator receiver protein [Vibrio sp. N418]
gi|342796065|gb|EGU31760.1| response regulator receiver protein [Vibrio sp. N418]
Length = 508
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+VD+I++D+ MP MTG EL+KK++ QS + +P ++++
Sbjct: 60 SVDIIVSDWKMPKMTGLELLKKVR-QSKAHKSVPFIMLT 97
>gi|320155682|ref|YP_004188061.1| chemotaxis regulator [Vibrio vulnificus MO6-24/O]
gi|326423910|ref|NP_760826.2| chemotaxis regulator [Vibrio vulnificus CMCP6]
gi|319930994|gb|ADV85858.1| chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Vibrio vulnificus
MO6-24/O]
gi|319999287|gb|AAO10353.2| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Vibrio vulnificus
CMCP6]
Length = 126
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + + +P ++I++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKNIRADA-ELKHLPVLMITAE 88
>gi|170739171|ref|YP_001767826.1| response regulator receiver modulated metal dependent
phosphohydrolase [Methylobacterium sp. 4-46]
gi|168193445|gb|ACA15392.1| response regulator receiver modulated metal dependent
phosphohydrolase [Methylobacterium sp. 4-46]
Length = 378
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E + A DL++ DY MPGM G I+K++ + + ++P V+I+S+
Sbjct: 40 EARIRAFDLMLVDYHMPGMDGICFIRKVR-EIPHYAQVPIVMITSD 84
>gi|186477721|ref|YP_001859191.1| response regulator receiver protein [Burkholderia phymatum
STM815]
gi|184194180|gb|ACC72145.1| response regulator receiver protein [Burkholderia phymatum
STM815]
Length = 120
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG++G E + DL++TD MPG +G +LI ++ + ++R+ P +++
Sbjct: 31 LAADGNEGL-------ENALAMPFDLVLTDQHMPGRSGLDLIAALR-GNPSYRDTPILVL 82
Query: 72 SSEN 75
++E+
Sbjct: 83 TTES 86
>gi|434406029|ref|YP_007148914.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Cylindrospermum
stagnale PCC 7417]
gi|428260284|gb|AFZ26234.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Cylindrospermum
stagnale PCC 7417]
Length = 125
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E+V + D+I+TD MPGM+G EL + +K S T + +P +I S +N IDR
Sbjct: 44 EKVFLEKPDVIVTDVVMPGMSGFELCRFLKKNSITAK-VPILICSCKN--QEIDR 95
>gi|21242676|ref|NP_642258.1| chemotaxis protein [Xanthomonas axonopodis pv. citri str. 306]
gi|84624138|ref|YP_451510.1| chemotaxis protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|289666125|ref|ZP_06487706.1| chemotaxis response regulator CheY [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|294664735|ref|ZP_06730064.1| chemotaxis protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|325921796|ref|ZP_08183615.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xanthomonas gardneri ATCC 19865]
gi|325928019|ref|ZP_08189236.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xanthomonas perforans 91-118]
gi|21108147|gb|AAM36794.1| chemotaxis protein [Xanthomonas axonopodis pv. citri str. 306]
gi|84368078|dbj|BAE69236.1| chemotaxis protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|292605489|gb|EFF48811.1| chemotaxis protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|325541615|gb|EGD13140.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xanthomonas perforans 91-118]
gi|325547728|gb|EGD18763.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Xanthomonas gardneri ATCC 19865]
Length = 126
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGMTG +L++ I+ + + +P +++++E
Sbjct: 47 DFVVTDWNMPGMTGIDLLRNIRADA-KLKHLPVMMVTAE 84
>gi|424864281|ref|ZP_18288185.1| nitrogen regulation protein [SAR86 cluster bacterium SAR86B]
gi|400759710|gb|EJP73891.1| nitrogen regulation protein [SAR86 cluster bacterium SAR86B]
Length = 460
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 17 SDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
SDGFD++ ++ E + + DLI+TD MPGM G +L+K I + + +IP +I+
Sbjct: 23 SDGFDVTLFESGEELITELKKGEPDLILTDVQMPGMHGYDLLKHI---NNNYEDIPVIIM 79
Query: 72 SS 73
++
Sbjct: 80 TA 81
>gi|262276377|ref|ZP_06054186.1| chemotaxis regulator CheY [Grimontia hollisae CIP 101886]
gi|262220185|gb|EEY71501.1| chemotaxis regulator CheY [Grimontia hollisae CIP 101886]
Length = 122
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGM G +L+K I+ + +P ++I++E
Sbjct: 45 GIDFVVTDWNMPGMQGIDLLKNIRADD-DLKHLPVLMITAE 84
>gi|440782782|ref|ZP_20960702.1| hypothetical protein F502_11131 [Clostridium pasteurianum DSM 525]
gi|440219828|gb|ELP59038.1| hypothetical protein F502_11131 [Clostridium pasteurianum DSM 525]
Length = 246
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
+ +LI+ D +PG+TG EL+++I+ QSF IP ++IS+++++
Sbjct: 69 SFNLILLDIMLPGLTGEELLQEIRKQSF----IPVIVISAKSMI 108
>gi|327398524|ref|YP_004339393.1| response regulator receiver protein [Hippea maritima DSM 10411]
gi|327181153|gb|AEA33334.1| response regulator receiver protein [Hippea maritima DSM 10411]
Length = 124
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 28 EEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E + +LA VDLIITD+ MP M G +KKI+ + +IP +++++E
Sbjct: 37 EALDILASNDVDLIITDWNMPVMDGLTFVKKIR-SDHKYDDIPIIMVTTE 85
>gi|319641845|ref|ZP_07996522.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_40A]
gi|345518849|ref|ZP_08798286.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254835794|gb|EET16103.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|317386518|gb|EFV67420.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_40A]
Length = 1319
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+G + DL + L DL+I+D MP M G EL +KIK Q+F +P V++++
Sbjct: 1097 SNGKEALDL-------LSELMPDLVISDVMMPVMDGMELCRKIK-QNFRTSHLPVVLLTA 1148
Query: 74 E 74
+
Sbjct: 1149 K 1149
>gi|240141831|ref|YP_002966339.1| Signal receiver domain protein [Methylobacterium extorquens AM1]
gi|240011773|gb|ACS42998.1| Signal receiver domain protein [Methylobacterium extorquens AM1]
Length = 185
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 35 VDLIITDYCMPGMTGCELIKKI 56
VDL++TD+ MPGMTG EL ++I
Sbjct: 99 VDLVVTDHAMPGMTGTELAEQI 120
>gi|223935181|ref|ZP_03627099.1| response regulator receiver protein [bacterium Ellin514]
gi|223896065|gb|EEF62508.1| response regulator receiver protein [bacterium Ellin514]
Length = 212
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
++ G D T E+V + D+II D MPGM G E++ I+ + FR IP V++
Sbjct: 105 VLRQGEDAIQYLATAAEQVSL--PDIIILDVKMPGMDGHEVLNWIRTRP-KFRHIPVVML 161
Query: 72 SSENILARIDR 82
+ N DR
Sbjct: 162 TISNFDRDKDR 172
>gi|291287962|ref|YP_003504778.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885122|gb|ADD68822.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
acetiphilus DSM 12809]
Length = 537
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
DLI+ D MPGM G E+ ++IK +SF R IP + I+++++
Sbjct: 52 DLILLDIMMPGMDGYEVCREIK-KSFNTRNIPVIFITAKSL 91
>gi|423226270|ref|ZP_17212736.1| hypothetical protein HMPREF1062_04922 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392629698|gb|EIY23704.1| hypothetical protein HMPREF1062_04922 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 1387
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
E V V +DLI++D MP M G EL ++IK ++ IP ++++++N
Sbjct: 1164 EVVEVEDIDLIVSDVMMPEMDGIELCRRIK-ENIETSHIPIILLTAKN 1210
>gi|423226757|ref|ZP_17213222.1| hypothetical protein HMPREF1062_05408 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392627030|gb|EIY21071.1| hypothetical protein HMPREF1062_05408 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 1349
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 1 MTTTNGVLLSRLMSDGSDGFD-LSPTDTEEVHVL----AVDLIITDYCMPGMTGCELIKK 55
M N LL L SD + L+ + EE VL DLIITD MP + G LIK+
Sbjct: 1095 MIDDNKELLWMLKDILSDEYSILTAENGEEGLVLLKQKTPDLIITDIMMPKIDGITLIKQ 1154
Query: 56 IKLQSFTFREIPTVIISSEN 75
+K T IP +I+S++N
Sbjct: 1155 LKSNKHTM-HIPLIILSAKN 1173
>gi|383648775|ref|ZP_09959181.1| response regulator receiver protein [Sphingomonas elodea ATCC
31461]
Length = 121
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG G E +H + DL+ITD MP M G ELI+ ++ + F+ +P +++S+
Sbjct: 33 NDGQHGL-------ERMHEVKPDLLITDINMPKMDGFELIEAVR-KVPEFKGVPILVLST 84
Query: 74 E 74
E
Sbjct: 85 E 85
>gi|295678082|ref|YP_003606606.1| response regulator receiver protein [Burkholderia sp. CCGE1002]
gi|295437925|gb|ADG17095.1| response regulator receiver protein [Burkholderia sp. CCGE1002]
Length = 125
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG++G E +A DL++TD MPG TG +LI ++ + ++ P +++
Sbjct: 31 LAADGNEGL-------ENALAMAFDLVLTDQHMPGKTGLDLITALR-GNPAYQATPILVL 82
Query: 72 SSEN 75
++E+
Sbjct: 83 TTES 86
>gi|224537529|ref|ZP_03678068.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM
14838]
gi|224520842|gb|EEF89947.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM
14838]
Length = 1373
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 1 MTTTNGVLLSRLMSDGSDGFD-LSPTDTEEVHVL----AVDLIITDYCMPGMTGCELIKK 55
M N LL L SD + L+ + EE VL DLIITD MP + G LIK+
Sbjct: 1119 MIDDNKELLWMLKDILSDEYSILTAENGEEGLVLLKQKTPDLIITDIMMPKIDGITLIKQ 1178
Query: 56 IKLQSFTFREIPTVIISSEN 75
+K T IP +I+S++N
Sbjct: 1179 LKSNKHTM-HIPLIILSAKN 1197
>gi|449529439|ref|XP_004171707.1| PREDICTED: two-component response regulator ARR8-like, partial
[Cucumis sativus]
Length = 109
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 22/23 (95%)
Query: 35 VDLIITDYCMPGMTGCELIKKIK 57
V+LI+TD+CMPGM+G +L+K++K
Sbjct: 87 VNLIMTDFCMPGMSGYDLLKRLK 109
>gi|78357150|ref|YP_388599.1| response regulator receiver protein [Desulfovibrio alaskensis
G20]
gi|78219555|gb|ABB38904.1| response regulator receiver protein [Desulfovibrio alaskensis
G20]
Length = 120
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
V ++ITD MP M G ELI+ I+ +S F+ IP +++++E+ A+
Sbjct: 46 VKMVITDLNMPNMDGIELIRNIRAKS-GFKFIPIIMLTTESQAAK 89
>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
gi|422417062|ref|ZP_16494019.1| heme response regulator HssR [Listeria innocua FSL J1-023]
gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
Length = 225
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 10/65 (15%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G + +TE+VH+ +D++ MP M G EL KK+++ ++ +IP +++++
Sbjct: 32 SDGVEGEKI--VETEQVHLAVIDVM-----MPNMDGFELCKKLRI---SYPDIPVIMLTA 81
Query: 74 ENILA 78
++ LA
Sbjct: 82 KDALA 86
>gi|423223292|ref|ZP_17209761.1| hypothetical protein HMPREF1062_01947 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392638828|gb|EIY32659.1| hypothetical protein HMPREF1062_01947 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 1429
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++I++D MP MTG E++KK++ ++T IP V++SS+
Sbjct: 1212 NMIVSDVVMPEMTGIEMVKKLQANTYTC-HIPIVLLSSK 1249
>gi|392950760|ref|ZP_10316315.1| hypothetical protein WQQ_03870 [Hydrocarboniphaga effusa AP103]
gi|391859722|gb|EIT70250.1| hypothetical protein WQQ_03870 [Hydrocarboniphaga effusa AP103]
Length = 125
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
G DGFD + EE+H DLII D MPGM G + + IK Q + P ++I+S
Sbjct: 35 GYDGFD-AVRLAEELHP---DLIIMDLVMPGMGGLQATRLIKAQ----HQPPQIVIAS 84
>gi|424867539|ref|ZP_18291325.1| Putative response regulator receiver protein (CheY)
[Leptospirillum sp. Group II 'C75']
gi|206603133|gb|EDZ39613.1| Putative response regulator receiver protein (CheY)
[Leptospirillum sp. Group II '5-way CG']
gi|387221995|gb|EIJ76495.1| Putative response regulator receiver protein (CheY)
[Leptospirillum sp. Group II 'C75']
Length = 126
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DG FD ++ D +++D+ MP MTG +L++K++ + T + +P +++++
Sbjct: 36 EDGQKAFDRLMSEK-------FDFVVSDWNMPNMTGIDLLRKVRAEP-TLKHLPFLMVTA 87
Query: 74 E 74
E
Sbjct: 88 E 88
>gi|436842876|ref|YP_007327254.1| Multi-sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432171782|emb|CCO25155.1| Multi-sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 826
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 19 GFDLSPTDTEE--VHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
GF +S E + +LA +DL+I+D MPGM G EL +KI+ ++ ++ +P ++++S
Sbjct: 27 GFQISLASNGERALGILAEKDIDLVISDVIMPGMDGYELCEKIR-ENPQYKSVPVILLTS 85
>gi|428316607|ref|YP_007114489.1| adenylate/guanylate cyclase with integral membrane sensor
[Oscillatoria nigro-viridis PCC 7112]
gi|428240287|gb|AFZ06073.1| adenylate/guanylate cyclase with integral membrane sensor
[Oscillatoria nigro-viridis PCC 7112]
Length = 1091
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D MP MTG E+ +KI+ + FT E+P V+++++N
Sbjct: 726 DLILLDLMMPRMTGYEVCEKIR-EKFTAIEVPIVMLTAKN 764
>gi|427727890|ref|YP_007074127.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Nostoc sp. PCC 7524]
gi|427363809|gb|AFY46530.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Nostoc sp. PCC 7524]
Length = 227
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+TD MP M G EL+++++ Q FR +P +++++
Sbjct: 48 DLIVTDIVMPRMNGYELVRRVR-QKPEFRLLPVILLTA 84
>gi|333378870|ref|ZP_08470597.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM
22836]
gi|332885682|gb|EGK05928.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM
22836]
Length = 377
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 4 TNGVLLSRLMSDGSDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKL 58
TN +LL L+ +GF++ + + + + DLI+ D MP M G E+I+++K
Sbjct: 18 TNVLLLQVLLD--KEGFNVVTANDGQAAIEIIRKDVPDLILLDINMPNMDGFEVIREVKK 75
Query: 59 QSFTFREIPTVIISSEN 75
S +REIP + +++ N
Sbjct: 76 YSL-YREIPVIFLTAMN 91
>gi|46580004|ref|YP_010812.1| chemotaxis protein CheY [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602585|ref|YP_966985.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
gi|387153554|ref|YP_005702490.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
gi|46449420|gb|AAS96071.1| chemotaxis protein CheY [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562814|gb|ABM28558.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
gi|311233998|gb|ADP86852.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
Length = 120
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79
V ++ITD MP M G ELI++I+ + ++ IP V++++E+ AR
Sbjct: 46 VKMVITDLNMPNMDGIELIRRIR-ATPAYKFIPVVMLTTESQAAR 89
>gi|334341286|ref|YP_004546266.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334092640|gb|AEG60980.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 1033
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
VDLII D MPG++G E+ +KI+ S++ E+P +++++
Sbjct: 738 VDLIILDIMMPGLSGYEVCRKIR-ASYSIAELPVLMLTA 775
>gi|374288064|ref|YP_005035149.1| putative two component system histidine kinase/response regulator
fusion protein [Bacteriovorax marinus SJ]
gi|301166605|emb|CBW26181.1| putative two component system histidine kinase/response regulator
fusion protein [Bacteriovorax marinus SJ]
Length = 488
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL++ DY MP M G EL KKI+ +E+P + SS
Sbjct: 171 ADLLLVDYLMPKMNGAELTKKIR-NELGLKELPIIFTSS 208
>gi|242280063|ref|YP_002992192.1| response regulator receiver protein [Desulfovibrio salexigens DSM
2638]
gi|242122957|gb|ACS80653.1| response regulator receiver protein [Desulfovibrio salexigens DSM
2638]
Length = 127
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ I++D+ MP MTG EL++K++ S F +IP +++++E
Sbjct: 52 SIQFIVSDWNMPQMTGIELLRKVRA-SEEFADIPFLMVTAE 91
>gi|407940261|ref|YP_006855902.1| response regulator receiver and Hpt phospho transfer protein
[Acidovorax sp. KKS102]
gi|407898055|gb|AFU47264.1| response regulator receiver and Hpt phospho transfer protein
[Acidovorax sp. KKS102]
Length = 244
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 24 PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
P + +H V+LIITD +PG +G +L++++ + R IP + S+
Sbjct: 37 PDAMQALHAGGVELIITDLMLPGESGIDLVQRLLQEPVHGRRIPVAVFSA 86
>gi|336254817|ref|YP_004597924.1| response regulator receiver protein [Halopiger xanaduensis SH-6]
gi|335338806|gb|AEH38045.1| response regulator receiver protein [Halopiger xanaduensis SH-6]
Length = 165
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+SDG + D + V DL++ D+ +PG++G +++ ++K FR IP ++++
Sbjct: 41 VSDGENALDFVHRRNDHVERPRPDLVLLDFHLPGVSGEDVLTELKSDP-AFRRIPVIVMT 99
Query: 73 SENILARIDR 82
S + I R
Sbjct: 100 SSDAEEDIAR 109
>gi|187920410|ref|YP_001889442.1| response regulator receiver protein [Burkholderia phytofirmans
PsJN]
gi|187718848|gb|ACD20071.1| response regulator receiver protein [Burkholderia phytofirmans
PsJN]
Length = 145
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSF-TFREIPTVIISSE 74
DLI+TD+ MP M G EL +++K S+ +IP V++S+E
Sbjct: 47 DLIVTDWNMPRMNGVELCQRLK--SYPALAQIPVVLLSAE 84
>gi|423696027|ref|ZP_17670517.1| chemotaxis protein CheY [Pseudomonas fluorescens Q8r1-96]
gi|388003597|gb|EIK64924.1| chemotaxis protein CheY [Pseudomonas fluorescens Q8r1-96]
Length = 123
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+H D ++TD+ MPGMTG +L+++++ + +P +++++E
Sbjct: 41 LHSGNFDFLVTDWNMPGMTGIDLLRQVRADE-KLKHLPVLMVTAE 84
>gi|359394652|ref|ZP_09187705.1| Phosphate regulon transcriptional regulatory protein phoB
[Halomonas boliviensis LC1]
gi|357971899|gb|EHJ94344.1| Phosphate regulon transcriptional regulatory protein phoB
[Halomonas boliviensis LC1]
Length = 229
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L + ++ H + VD L++ D+ MPG +G EL +++K + T EIP ++++++
Sbjct: 31 LEADNAQDAHAMVVDHQPDLLLLDWMMPGTSGIELARRLKREEATA-EIPIIMLTAK 86
>gi|386349463|ref|YP_006047711.1| response regulator receiver domain-containing protein
[Rhodospirillum rubrum F11]
gi|346717899|gb|AEO47914.1| response regulator receiver domain-containing protein
[Rhodospirillum rubrum F11]
Length = 122
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG++G +AVDL++TD MP M G +LI++++ + T++ +P + +++
Sbjct: 33 ADGAEGL-------ARARDMAVDLVVTDLNMPVMNGLDLIRELR-KLPTYKGVPIIFLTT 84
Query: 74 EN 75
E+
Sbjct: 85 ES 86
>gi|410100716|ref|ZP_11295673.1| hypothetical protein HMPREF1076_04851 [Parabacteroides goldsteinii
CL02T12C30]
gi|409214943|gb|EKN07951.1| hypothetical protein HMPREF1076_04851 [Parabacteroides goldsteinii
CL02T12C30]
Length = 1350
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
LIITD MP + G ELI ++K FT R IP +++S+
Sbjct: 1138 LIITDIMMPEIDGMELISRVKSDKFT-RHIPLIVVSA 1173
>gi|407003076|gb|EKE19704.1| hypothetical protein ACD_8C00123G0002 [uncultured bacterium]
Length = 266
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
DLIITD MP M G E+I++IKL T ++ P +++S+ I
Sbjct: 192 DLIITDMVMPAMGGEEIIRRIKLDEKT-KDTPIIVLSASLI 231
>gi|350553772|ref|ZP_08922933.1| two component transcriptional regulator PhoB, winged helix family
[Thiorhodospira sibirica ATCC 700588]
gi|349789915|gb|EGZ43845.1| two component transcriptional regulator PhoB, winged helix family
[Thiorhodospira sibirica ATCC 700588]
Length = 237
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 9 LSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPT 68
LSR + ++ D S + + L DLI+ D+ +PG++G +L +++K +T REIP
Sbjct: 30 LSRAGFEVTEACDASQAQNQLANQLP-DLILLDWMLPGISGIDLARRLKRDEYT-REIPI 87
Query: 69 VIISSE 74
+++++
Sbjct: 88 IMLTAR 93
>gi|329924374|ref|ZP_08279491.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
gi|328940725|gb|EGG37042.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
Length = 1021
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
A DL+I+D MP M+G EL ++I+ + FT E+P +++++ +
Sbjct: 739 AWDLVISDIMMPQMSGYELTRRIR-ERFTLTELPVLLLTARS 779
>gi|385333095|ref|YP_005887046.1| winged helix family two component transcriptional regulator
[Marinobacter adhaerens HP15]
gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
[Marinobacter adhaerens HP15]
Length = 230
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L D E H L VD L++ D+ +PG +G EL +++K + T +IP ++++++
Sbjct: 31 LEAADAREAHALIVDKHPDLVLLDWMLPGTSGVELARRLKKEESTA-DIPIIMLTAK 86
>gi|255539557|ref|XP_002510843.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223549958|gb|EEF51445.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 754
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
A DL+ITD MPGM G +L K+I + F +IP VI+SS+
Sbjct: 66 AFDLVITDLHMPGMNGIQLQKQID-EEF---KIPVVIMSSD 102
>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
17393]
gi|189437374|gb|EDV06359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides intestinalis DSM 17393]
Length = 1342
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 8 LLSRLMS---------DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKL 58
LL RL S DG +G D T+E+ D++++D MP M+G E+ +KIK
Sbjct: 1106 LLVRLFSKVYSVCEAQDGEEGLD----KTKEIQP---DIVLSDIMMPKMSGIEMCRKIK- 1157
Query: 59 QSFTFREIPTVIISSE 74
+F IP ++++++
Sbjct: 1158 SNFETSHIPVILLTAQ 1173
>gi|158334288|ref|YP_001515460.1| response regulator [Acaryochloris marina MBIC11017]
gi|158304529|gb|ABW26146.1| response regulator, putative [Acaryochloris marina MBIC11017]
Length = 393
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
T E++ + ++ D MPG+TG EL+KKI+ Q IP VI++ E L+
Sbjct: 295 TALEQIDQVKPGIVFIDINMPGITGFELVKKIRQQP-NLAAIPLVILTGEQKLS 347
>gi|115377928|ref|ZP_01465113.1| chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1]
gi|310822835|ref|YP_003955193.1| chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1]
gi|115365088|gb|EAU64138.1| chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1]
gi|309395907|gb|ADO73366.1| Chemotaxis protein CheY [Stigmatella aurantiaca DW4/3-1]
Length = 125
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
DLI+TD MP M G +LI I+ Q+ R++P V+I++E +A +R
Sbjct: 50 DLILTDINMPLMDGLKLISHIR-QTAENRKVPIVVITTEGAVADRER 95
>gi|114320146|ref|YP_741829.1| response regulator receiver protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226540|gb|ABI56339.1| response regulator receiver protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 131
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+D ++TD+ MPGM+G +L+K+++ +++P +++++E
Sbjct: 49 GIDFLVTDWNMPGMSGLDLLKEVRADP-ELKDLPVLMVTAE 88
>gi|386826790|ref|ZP_10113897.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386427674|gb|EIJ41502.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 731
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
DLIITD MP M G E + K++ ++ +R IP V++++++I
Sbjct: 650 DLIITDLMMPEMDGFEFVAKLR-ENPAWRAIPVVVLTAKDI 689
>gi|255616226|ref|XP_002539738.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223502939|gb|EEF22645.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 185
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PGM+G E +++K S T +E+P +++++
Sbjct: 49 DLILLDWMLPGMSGIEFARRLKSDSLT-KEVPIIMLTA 85
>gi|429333050|ref|ZP_19213757.1| two-component response regulator CheY [Pseudomonas putida CSV86]
gi|428762262|gb|EKX84469.1| two-component response regulator CheY [Pseudomonas putida CSV86]
Length = 128
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 11/64 (17%)
Query: 21 DLSPTDTEE----------VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
DL T+T E +H D ++TD+ MPGMTG +L+++++ + + +P ++
Sbjct: 26 DLGFTNTHEADDGTTALPMLHSGNFDFLVTDWNMPGMTGIDLLREVR-KDEKLKHLPVLM 84
Query: 71 ISSE 74
+++E
Sbjct: 85 VTAE 88
>gi|83592734|ref|YP_426486.1| response regulator receiver domain-containing protein
[Rhodospirillum rubrum ATCC 11170]
gi|83575648|gb|ABC22199.1| Response regulator receiver domain protein (CheY) [Rhodospirillum
rubrum ATCC 11170]
Length = 123
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DG++G +AVDL++TD MP M G +LI++++ + T++ +P + +++
Sbjct: 34 ADGAEGL-------ARARDMAVDLVVTDLNMPVMNGLDLIRELR-KLPTYKGVPIIFLTT 85
Query: 74 EN 75
E+
Sbjct: 86 ES 87
>gi|352101611|ref|ZP_08958847.1| phosphate regulon transcriptional regulator PhoB [Halomonas sp.
HAL1]
gi|350600450|gb|EHA16516.1| phosphate regulon transcriptional regulator PhoB [Halomonas sp.
HAL1]
Length = 229
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 22 LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
L + ++ H + VD L++ D+ MPG +G EL +++K + T EIP ++++++
Sbjct: 31 LEADNAQDAHAMVVDHQPDLLLLDWMMPGTSGIELARRLKREEATA-EIPIIMLTAK 86
>gi|156975412|ref|YP_001446319.1| hypothetical protein VIBHAR_03143 [Vibrio harveyi ATCC BAA-1116]
gi|84578778|dbj|BAE72831.1| chemotaxis protein CheY [Vibrio alginolyticus]
gi|156527006|gb|ABU72092.1| hypothetical protein VIBHAR_03143 [Vibrio harveyi ATCC BAA-1116]
Length = 130
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + + +P ++I++E
Sbjct: 55 DFVVTDWNMPGMQGIDLLKHIRADA-ELKHLPVLMITAE 92
>gi|354566042|ref|ZP_08985215.1| integral membrane sensor hybrid histidine kinase [Fischerella sp.
JSC-11]
gi|353546550|gb|EHC15998.1| integral membrane sensor hybrid histidine kinase [Fischerella sp.
JSC-11]
Length = 635
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG+ G+ E+ V DLIITD MP G ELIK+++ QS +++I VI SS
Sbjct: 456 SDGNQGW-------EKAIVHKPDLIITDLIMPVTDGFELIKRLR-QSSLYKDI-AVIASS 506
Query: 74 ENILA 78
++ A
Sbjct: 507 ASVFA 511
>gi|323497541|ref|ZP_08102558.1| chemotaxis protein CheY [Vibrio sinaloensis DSM 21326]
gi|323317290|gb|EGA70284.1| chemotaxis protein CheY [Vibrio sinaloensis DSM 21326]
Length = 121
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIK-LQSFTFREIPTVIIS 72
DG DG LS D +VH LII+D MP M G + +K++K L + F P ++++
Sbjct: 33 KDGLDG--LSMLDGRKVH-----LIISDVNMPNMNGIDFVKQLKALPKYKF--TPVIMLT 83
Query: 73 SEN 75
+EN
Sbjct: 84 TEN 86
>gi|268316342|ref|YP_003290061.1| response regulator receiver protein [Rhodothermus marinus DSM
4252]
gi|345303944|ref|YP_004825846.1| response regulator receiver protein [Rhodothermus marinus
SG0.5JP17-172]
gi|262333876|gb|ACY47673.1| response regulator receiver protein [Rhodothermus marinus DSM
4252]
gi|345113177|gb|AEN74009.1| response regulator receiver protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 122
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG+D E++ ++D +ITD+ MP M G EL K I+ + F +P +++++
Sbjct: 32 SDGADAL-------EKLEQGSIDFVITDWNMPNMNGLELTKAIRSHA-RFGNLPILMVTT 83
>gi|50400707|sp|Q9ZVD3.2|ARR13_ARATH RecName: Full=Putative two-component response regulator ARR13
Length = 572
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MPGM G +L K+I + F + +++SS+
Sbjct: 65 IDLIITDYYMPGMNGLQLKKQITQE---FGNLSVLVMSSD 101
>gi|422008195|ref|ZP_16355180.1| response regulator receiver protein [Providencia rettgeri Dmel1]
gi|422018583|ref|ZP_16365140.1| response regulator receiver protein [Providencia alcalifaciens
Dmel2]
gi|414096330|gb|EKT57989.1| response regulator receiver protein [Providencia rettgeri Dmel1]
gi|414104875|gb|EKT66440.1| response regulator receiver protein [Providencia alcalifaciens
Dmel2]
Length = 130
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ + DG D E++ ++D ++ D+ MP M G EL+K I+ + IP ++++
Sbjct: 33 IEEAEDGVDA----LEKIRAGSIDFVVADWNMPNMDGLELLKTIRGDD-ALKHIPVLMVT 87
Query: 73 S----ENILA 78
+ ENI+A
Sbjct: 88 AEAKKENIIA 97
>gi|423301912|ref|ZP_17279935.1| hypothetical protein HMPREF1057_03076 [Bacteroides finegoldii
CL09T03C10]
gi|408471003|gb|EKJ89535.1| hypothetical protein HMPREF1057_03076 [Bacteroides finegoldii
CL09T03C10]
Length = 1431
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
E + DLI+ D MPG++G E+ +K+K FT IP +++++ N
Sbjct: 1216 ERAYSYDADLIVCDVLMPGLSGFEVTQKLK-SDFTTSHIPVILLTALN 1262
>gi|385811127|ref|YP_005847523.1| CheY-like receiver [Ignavibacterium album JCM 16511]
gi|383803175|gb|AFH50255.1| CheY-like receiver [Ignavibacterium album JCM 16511]
Length = 129
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG D +D + ++ +ITD+ MP M+G EL+K I+ F E+P +++++
Sbjct: 34 SDGKDALAKLESDPD------INFVITDWNMPEMSGLELVKAIRSDE-RFSELPVLMVTT 86
>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 231
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 11/64 (17%)
Query: 18 DGF--DLSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+GF DL T E +H LA++ LI+ D +PGM G EL ++I+ +E+P +I+
Sbjct: 25 NGFFADLCHTGNEGLH-LALNEDYSLIVVDLQLPGMNGFELCRQIRKN----KEVPILIV 79
Query: 72 SSEN 75
S++N
Sbjct: 80 SAKN 83
>gi|422414103|ref|ZP_16491062.1| heme response regulator HssR [Listeria innocua FSL S4-378]
gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
Length = 225
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 10/65 (15%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
SDG +G + +TE+VH+ +D++ MP M G EL KK+++ ++ +IP +++++
Sbjct: 32 SDGLEGEKM--VETEQVHLAVIDVM-----MPNMDGFELCKKLRI---SYPDIPVIMLTA 81
Query: 74 ENILA 78
++ LA
Sbjct: 82 KDALA 86
>gi|78776409|ref|YP_392724.1| response regulator receiver domain-containing protein
[Sulfurimonas denitrificans DSM 1251]
gi|78496949|gb|ABB43489.1| response regulator receiver domain protein (CheY-like)
[Sulfurimonas denitrificans DSM 1251]
Length = 564
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+G DGF++ T +D+IITDY MP + G E+ K I+ ++IP +++S+
Sbjct: 47 NGKDGFEIFKTQK-------IDIIITDYEMPNLNGIEMTKLIRELD---KDIPIILVSA 95
>gi|15225844|ref|NP_180275.1| putative two-component response regulator ARR13 [Arabidopsis
thaliana]
gi|3885337|gb|AAC77865.1| putative two-component response regulator protein [Arabidopsis
thaliana]
gi|330252838|gb|AEC07932.1| putative two-component response regulator ARR13 [Arabidopsis
thaliana]
Length = 575
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MPGM G +L K+I + F + +++SS+
Sbjct: 65 IDLIITDYYMPGMNGLQLKKQITQE---FGNLSVLVMSSD 101
>gi|443473960|ref|ZP_21063981.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Pseudomonas pseudoalcaligenes KF707]
gi|442904895|gb|ELS29810.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Pseudomonas pseudoalcaligenes KF707]
Length = 229
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 19 GFD-LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
G+D L +T++ H + VD LI+ D+ +PG +G EL +++K T +IP +++++
Sbjct: 27 GYDCLEAENTQQAHAIIVDRKPDLILLDWMLPGTSGIELARRLKRDDLT-SDIPIIMLTA 85
Query: 74 EN 75
+
Sbjct: 86 KG 87
>gi|421861185|ref|ZP_16293241.1| response regulator [Paenibacillus popilliae ATCC 14706]
gi|410829283|dbj|GAC43678.1| response regulator [Paenibacillus popilliae ATCC 14706]
Length = 233
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 12 LMSDGSDGFDLSPTDTEE--VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
L +DG + S + E VH +D II D MP M G E I+ I+ Q F +IP +
Sbjct: 21 LQNDGYKVYTASNGEEAEHVVHNQVIDFIIIDVMMPKMNGYEFIESIRNQGF---DIPFL 77
Query: 70 IISSEN 75
+++ N
Sbjct: 78 FLTALN 83
>gi|90021808|ref|YP_527635.1| response regulator receiver domain-containing protein
[Saccharophagus degradans 2-40]
gi|89951408|gb|ABD81423.1| response regulator receiver [Saccharophagus degradans 2-40]
Length = 128
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM+G EL+K+I+ + IP +++++E
Sbjct: 51 DFLVTDWNMPGMSGIELLKEIRADA-KLGTIPVLMVTAE 88
>gi|433676473|ref|ZP_20508577.1| Chemotaxis protein cheY [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440732134|ref|ZP_20912098.1| chemotaxis response regulator chey protein [Xanthomonas
translucens DAR61454]
gi|430818411|emb|CCP38877.1| Chemotaxis protein cheY [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440370215|gb|ELQ07151.1| chemotaxis response regulator chey protein [Xanthomonas
translucens DAR61454]
Length = 130
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D I+TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 51 DFIVTDWNMPGMTGIDLLRNVRADD-KLKHLPVLMVTAE 88
>gi|91785659|ref|YP_560865.1| response regulator receiver domain-containing protein
[Burkholderia xenovorans LB400]
gi|187925786|ref|YP_001897428.1| response regulator receiver protein [Burkholderia phytofirmans
PsJN]
gi|385207616|ref|ZP_10034484.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Burkholderia sp.
Ch1-1]
gi|91689613|gb|ABE32813.1| Response regulator receiver domain protein(CheY) [Burkholderia
xenovorans LB400]
gi|187716980|gb|ACD18204.1| response regulator receiver protein [Burkholderia phytofirmans
PsJN]
gi|385179954|gb|EIF29230.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Burkholderia sp.
Ch1-1]
Length = 125
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG++G E ++ DL++TD MPG TG +LI ++ + ++ P +++
Sbjct: 31 LAADGNEGL-------ENALAMSFDLVLTDQYMPGKTGLDLIAALR-NNPAYQATPILVL 82
Query: 72 SSEN 75
++E+
Sbjct: 83 TTES 86
>gi|390957981|ref|YP_006421738.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Terriglobus roseus DSM 18391]
gi|390958322|ref|YP_006422079.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Terriglobus roseus DSM 18391]
gi|390412899|gb|AFL88403.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Terriglobus roseus DSM 18391]
gi|390413240|gb|AFL88744.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Terriglobus roseus DSM 18391]
Length = 124
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 5/39 (12%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFR-EIPTVIIS 72
++++ITD+ MP M+G E +++++ TFR E+P ++IS
Sbjct: 51 INMVITDHIMPNMSGAEFVRELR----TFRPELPVMVIS 85
>gi|357469965|ref|XP_003605267.1| hypothetical protein MTR_4g027810 [Medicago truncatula]
gi|355506322|gb|AES87464.1| hypothetical protein MTR_4g027810 [Medicago truncatula]
Length = 165
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKL 58
V+L+ITD+CMPGM EL+KKIK+
Sbjct: 32 VNLVITDHCMPGMRDYELLKKIKV 55
>gi|254427088|ref|ZP_05040795.1| hypothetical protein ADG881_318 [Alcanivorax sp. DG881]
gi|196193257|gb|EDX88216.1| hypothetical protein ADG881_318 [Alcanivorax sp. DG881]
Length = 149
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIK-LQSFTFREIPTVIISSENILARIDR 82
D +ITDY MP M G EL+++++ LQ T R + T +I E +++ I++
Sbjct: 48 DAVITDYMMPEMNGLELLQELRDLQPDTIRIVLTGVIDIETVMSAINK 95
>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
[Methylophilales bacterium HTCC2181]
gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
[Methylophilales bacterium HTCC2181]
Length = 231
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLII D+ +PGM G E K+I+ S T R+IP ++++++
Sbjct: 48 DLIILDWMLPGMDGVEFAKRIRGSS-TTRKIPIIMLTAK 85
>gi|410613869|ref|ZP_11324922.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola psychrophila 170]
gi|410166586|dbj|GAC38811.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola psychrophila 170]
Length = 229
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG TG +L KK+K + R+IP +++++
Sbjct: 48 DLILLDWMLPGGTGVQLAKKLKQHEYA-RDIPIIMLTA 84
>gi|374296384|ref|YP_005046575.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Clostridium
clariflavum DSM 19732]
gi|359825878|gb|AEV68651.1| response regulator with CheY-like receiver domain and
winged-helix DNA-binding domain [Clostridium
clariflavum DSM 19732]
Length = 236
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 12 LMSDGSD--GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
L+ +G D FD T +E H DL I D +PG+ G E+ +KIK F ++ P +
Sbjct: 23 LIENGYDVKCFDNGETMFDECHTTKPDLFILDIMLPGIDGFEICRKIKENPF-LKKTPII 81
Query: 70 IISSEN 75
+++++N
Sbjct: 82 MLTAKN 87
>gi|317474353|ref|ZP_07933627.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316909034|gb|EFV30714.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 1320
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL-ARID 81
+D++++D MP M G EL+K IK ++ + IP +++S+++ L +RI+
Sbjct: 1107 IDIVVSDIMMPNMDGMELLKNIK-ETVEYSHIPVILLSAKSDLESRIN 1153
>gi|451947944|ref|YP_007468539.1| CheY-like receiver, AAA-type ATPase and DNA-binding
domain-containing response regulator [Desulfocapsa
sulfexigens DSM 10523]
gi|451907292|gb|AGF78886.1| CheY-like receiver, AAA-type ATPase and DNA-binding
domain-containing response regulator [Desulfocapsa
sulfexigens DSM 10523]
Length = 463
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 7 VLLSRLMSDGSDGFDL----SPTD-TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
++LS L+ D +GF++ S TD +V + +DL+ITD MPGM G +L++K+K +
Sbjct: 15 IVLSELLRD--EGFEVFTASSGTDGIAQVAEVDLDLVITDMQMPGMDGLQLLEKVKENN- 71
Query: 62 TFREIPTVIISS 73
+P ++I++
Sbjct: 72 --PNLPVIMITA 81
>gi|443315490|ref|ZP_21044978.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442784916|gb|ELR94768.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 1118
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
DLI+ D MP MTG E+ KKI+ F E+P V+++++N +A I
Sbjct: 756 DLILLDVMMPRMTGYEVCKKIR-DRFPSYELPIVMLTAKNQVADI 799
>gi|398849705|ref|ZP_10606435.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM80]
gi|398972035|ref|ZP_10683892.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM30]
gi|424922096|ref|ZP_18345457.1| Response regulator [Pseudomonas fluorescens R124]
gi|398137746|gb|EJM26788.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM30]
gi|398250502|gb|EJN35819.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM80]
gi|404303256|gb|EJZ57218.1| Response regulator [Pseudomonas fluorescens R124]
Length = 127
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLKHLPVLMVTAE 88
>gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family
[Raphidiopsis brookii D9]
gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family
[Raphidiopsis brookii D9]
Length = 229
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+DL++TD MP M G EL+++++ Q+ FR +P +++++
Sbjct: 47 LDLMVTDIIMPRMNGYELVRRVR-QNIEFRLLPVILLTA 84
>gi|167950819|ref|ZP_02537893.1| nitrogen regulation protein NR(I) [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 337
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D+I++D MPGM G EL+++I L+ F E+P +I+++ + L
Sbjct: 50 DVIVSDIRMPGMDGLELLERINLR---FPELPVIIMTAHSDL 88
>gi|255323420|ref|ZP_05364551.1| Chemotaxis protein CheY homolog [Campylobacter showae RM3277]
gi|255299457|gb|EET78743.1| Chemotaxis protein CheY homolog [Campylobacter showae RM3277]
Length = 121
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++++ITD+ MP M G EL+KK++ ++ + ++P +++++E A +
Sbjct: 47 INVLITDWNMPEMNGLELVKKVRAEA-KYVDMPIIMVTTEGGKAEV 91
>gi|167034904|ref|YP_001670135.1| response regulator receiver protein [Pseudomonas putida GB-1]
gi|166861392|gb|ABY99799.1| response regulator receiver protein [Pseudomonas putida GB-1]
Length = 128
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM+G +L++K++ S + +P +++++E
Sbjct: 51 DFLVTDWNMPGMSGIDLLRKVR-ASEKLKSMPVLMVTAE 88
>gi|168069753|ref|XP_001786566.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162660993|gb|EDQ48622.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76
++DL+I D+ MPGM+G +L + ++ Q F+ +P +++++ ++
Sbjct: 444 SIDLVIADWMMPGMSGLDLCRSVRRQ-FSLSALPILLLTARSL 485
>gi|408492641|ref|YP_006869010.1| two-component system nitrogen sensor response regulator NR(I)
[Psychroflexus torquis ATCC 700755]
gi|408469916|gb|AFU70260.1| two-component system nitrogen sensor response regulator NR(I)
[Psychroflexus torquis ATCC 700755]
Length = 455
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL+ITDY +P M G ELI+KIK T IP ++I++
Sbjct: 47 DLVITDYRLPKMNGLELIEKIK----THWNIPVILITN 80
>gi|411116494|ref|ZP_11388981.1| diguanylate cyclase (GGDEF) domain-containing protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410712597|gb|EKQ70098.1| diguanylate cyclase (GGDEF) domain-containing protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 352
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 19 GFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
GF +S D+ E+ + + DLI+ D CMP M G E+ + +K T R+IP + IS+
Sbjct: 34 GFQVSVADSGEIALQMIEEATPDLILLDICMPQMDGYEVCQVLKKNPDT-RDIPVIFISA 92
>gi|407715117|ref|YP_006835682.1| two-component system, chemotaxis family, response regulator CheY
[Burkholderia phenoliruptrix BR3459a]
gi|407237301|gb|AFT87500.1| two-component system, chemotaxis family, response regulator CheY
[Burkholderia phenoliruptrix BR3459a]
Length = 125
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 12/66 (18%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAV--DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV 69
L +DG++G + + LAV DL++TD MPG TG +LI +++ + + E P +
Sbjct: 31 LAADGAEGLE---------NALAVRFDLVLTDQHMPGKTGLDLIAELR-GNPAYAETPIL 80
Query: 70 IISSEN 75
++++E+
Sbjct: 81 VLTTES 86
>gi|404406415|ref|ZP_10997999.1| sensor histidine kinase/DNA-binding response regulator [Alistipes sp.
JC136]
Length = 1353
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+GSDGFDL +H D+++TD M M G EL ++IK IP VI++++
Sbjct: 1124 NGSDGFDL-------IHTEMPDVVVTDVLMSKMDGYELCRRIKTDVL-LSHIPVVILTAK 1175
>gi|398990263|ref|ZP_10693458.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM24]
gi|399016657|ref|ZP_10718870.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM16]
gi|398104927|gb|EJL95050.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM16]
gi|398144683|gb|EJM33503.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM24]
Length = 127
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLKHLPVLMVTAE 88
>gi|415828361|ref|ZP_11514958.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli OK1357]
gi|424567062|ref|ZP_18007995.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli EC4448]
gi|425107818|ref|ZP_18510086.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 6.0172]
gi|425172107|ref|ZP_18570521.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli FDA504]
gi|425309259|ref|ZP_18698740.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli EC1735]
gi|429012331|ref|ZP_19079592.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 95.0943]
gi|429064949|ref|ZP_19128819.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 99.0672]
gi|444945568|ref|ZP_21263990.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 99.0839]
gi|323184776|gb|EFZ70147.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli OK1357]
gi|390915424|gb|EIP73939.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli EC4448]
gi|408102808|gb|EKH35197.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli FDA504]
gi|408239541|gb|EKI62289.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli EC1735]
gi|408560303|gb|EKK36567.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 6.0172]
gi|427270529|gb|EKW35407.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 95.0943]
gi|427336958|gb|EKW97906.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 99.0672]
gi|444565009|gb|ELV41910.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 99.0839]
Length = 209
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 28 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 64
>gi|149280055|ref|ZP_01886180.1| two-component system sensor histidine kinase/response [Pedobacter sp.
BAL39]
gi|149229252|gb|EDM34646.1| two-component system sensor histidine kinase/response [Pedobacter sp.
BAL39]
Length = 1354
Score = 37.7 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+S+ DG++ T E+ DL+I+D MPGMTG + K +K + IP ++++
Sbjct: 1129 ISEAEDGYEGLQTAKEKFP----DLVISDVMMPGMTGTQFCKALK-EDLETSHIPFLMLT 1183
Query: 73 SEN 75
++N
Sbjct: 1184 AKN 1186
>gi|427731288|ref|YP_007077525.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Nostoc sp. PCC 7524]
gi|427367207|gb|AFY49928.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Nostoc sp. PCC 7524]
Length = 137
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 8 LLSRLMSDGSDGFDLSPTDTEEVHV-----LAVDLIITDYCMPGMTGCELIKKIKLQSFT 62
L+S + D G+ + T+T + + + +D I+TD MPG +G EL + +K T
Sbjct: 33 LISNYLED--QGYQIIKTNTAKAGLEIALEVKLDAIVTDVVMPGKSGFELCRFLKSHQ-T 89
Query: 63 FREIPTVIISSEN 75
++ IP V+ S+ N
Sbjct: 90 YQNIPIVVCSAHN 102
>gi|120553827|ref|YP_958178.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
gi|120323676|gb|ABM17991.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
Length = 250
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 2 TTTNGVLLSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKL 58
++T +LLSRL+ T + +L DLI D+ +PGM G + ++++K
Sbjct: 12 SSTARILLSRLLERADISTKGVATAEQAFPLLQQEHFDLIFLDHLLPGMNGFQALERLKQ 71
Query: 59 QSFTFREIPTVIISSEN 75
Q T R+IP + +S+N
Sbjct: 72 QPET-RDIPVFMYTSQN 87
>gi|428302029|ref|YP_007140335.1| response regulator receiver protein [Calothrix sp. PCC 6303]
gi|428238573|gb|AFZ04363.1| response regulator receiver protein [Calothrix sp. PCC 6303]
Length = 125
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+D ++TD MPGM+G EL + +K T +++P V+ SS+N IDR
Sbjct: 51 LDAVVTDVVMPGMSGFELCRALKRNPQT-QKVPIVVCSSKN--QEIDR 95
>gi|410634008|ref|ZP_11344648.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola arctica BSs20135]
gi|410146668|dbj|GAC21515.1| two-component system, OmpR family, phosphate regulon response
regulator PhoB [Glaciecola arctica BSs20135]
Length = 229
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG TG +L KK+K + R+IP +++++
Sbjct: 48 DLILLDWMLPGGTGVQLAKKLKQHEYA-RDIPIIMLTA 84
>gi|420370005|ref|ZP_14870632.1| phosphate regulon transcriptional regulatory protein PhoB
[Shigella flexneri 1235-66]
gi|391320685|gb|EIQ77506.1| phosphate regulon transcriptional regulatory protein PhoB
[Shigella flexneri 1235-66]
Length = 209
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 28 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 64
>gi|313683031|ref|YP_004060769.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
16994]
gi|313155891|gb|ADR34569.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
16994]
Length = 123
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G EL+KK++ + F ++P +++++E A +
Sbjct: 49 MLITDWNMPEMNGLELVKKVRADA-RFADLPIIMVTTEGGKAEV 91
>gi|296116622|ref|ZP_06835232.1| response regulator receiver sensor signal transduction histidine
kinase [Gluconacetobacter hansenii ATCC 23769]
gi|295976834|gb|EFG83602.1| response regulator receiver sensor signal transduction histidine
kinase [Gluconacetobacter hansenii ATCC 23769]
Length = 628
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
DT + H+ DL+I DY +PGM G +L +++++ + T R IP V+I +E I ++R
Sbjct: 58 DTLDSHI--PDLVIADYHLPGMNGGQLARQLRMNAVT-RTIP-VLILTEGIEPGLER 110
>gi|159186651|ref|NP_396444.2| two component sensor kinase/response regulator hybrid
[Agrobacterium fabrum str. C58]
gi|159141711|gb|AAK90885.2| two component sensor kinase/response regulator hybrid
[Agrobacterium fabrum str. C58]
Length = 681
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 36 DLIITDYCMPGMTGCELIKKIK 57
DL+ITDY MPGMTG EL K ++
Sbjct: 615 DLVITDYSMPGMTGAELAKAVR 636
>gi|149279505|ref|ZP_01885635.1| response regulator [Pedobacter sp. BAL39]
gi|149229798|gb|EDM35187.1| response regulator [Pedobacter sp. BAL39]
Length = 138
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
DLI+ DY +PG+TG EL +K Q T IP VI S+ + +A
Sbjct: 63 DLILLDYLLPGVTGAELYANLKKQPAT-AAIPVVICSAYDRMA 104
>gi|149177001|ref|ZP_01855610.1| response regulator receiver domain protein (CheY-like)
[Planctomyces maris DSM 8797]
gi|148844256|gb|EDL58610.1| response regulator receiver domain protein (CheY-like)
[Planctomyces maris DSM 8797]
Length = 110
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
D++++D+ MP M G +L+K+I+ ++ ++IP ++I++E AR+
Sbjct: 36 DIVLSDWNMPNMDGLQLLKEIRQRN---KDIPVIMITTEAERARV 77
>gi|442323009|ref|YP_007363030.1| response regulator [Myxococcus stipitatus DSM 14675]
gi|441490651|gb|AGC47346.1| response regulator [Myxococcus stipitatus DSM 14675]
Length = 231
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 9 LSRLMSDGSDGFDLS-----PTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIK-LQSFT 62
L RL+ +GFD+ E + + D+++TD+ MPGMTG EL++++K L
Sbjct: 19 LRRLLR--REGFDVQLAFNGEEALERLKGFSPDIVLTDFRMPGMTGSELLQRVKRLHPLA 76
Query: 63 FREIPTVIISSENILARID 81
R I + ++++A ++
Sbjct: 77 LRLIISGYADFKSVVASVN 95
>gi|313683017|ref|YP_004060755.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
16994]
gi|313155877|gb|ADR34555.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
16994]
Length = 124
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G EL+KK++ + F ++P +++++E A +
Sbjct: 49 MLITDWNMPEMNGLELVKKVRADA-RFADLPIIMVTTEGGKAEV 91
>gi|424781512|ref|ZP_18208370.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Campylobacter showae
CSUNSWCD]
gi|421960798|gb|EKU12400.1| Chemotaxis regulator - transmits chemoreceptor signals to
flagelllar motor components CheY [Campylobacter showae
CSUNSWCD]
Length = 121
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++++ITD+ MP M G EL+KK++ ++ + ++P +++++E A +
Sbjct: 47 INVLITDWNMPEMNGLELVKKVRAEA-KYVDMPIIMVTTEGGKAEV 91
>gi|77457791|ref|YP_347296.1| response regulator receiver domain-containing protein
[Pseudomonas fluorescens Pf0-1]
gi|398974621|ref|ZP_10685181.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM25]
gi|77381794|gb|ABA73307.1| chemotaxis protein CheY [Pseudomonas fluorescens Pf0-1]
gi|398141339|gb|EJM30264.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Pseudomonas sp. GM25]
Length = 127
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLKHLPVLMVTAE 88
>gi|407363112|ref|ZP_11109644.1| protein CheY [Pseudomonas mandelii JR-1]
gi|426410755|ref|YP_007030854.1| chemotaxis protein CheY [Pseudomonas sp. UW4]
gi|426268972|gb|AFY21049.1| chemotaxis protein CheY [Pseudomonas sp. UW4]
Length = 127
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLKHLPVLMVTAE 88
>gi|399577731|ref|ZP_10771483.1| hypothetical protein HSB1_35220 [Halogranum salarium B-1]
gi|399237173|gb|EJN58105.1| hypothetical protein HSB1_35220 [Halogranum salarium B-1]
Length = 144
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 1 MTTTNGVLLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQS 60
+ TT L L G DG D P DLI+ D +P ++G E+++ +K
Sbjct: 35 VVTTGNAALMYLDERGIDGADPYP-----------DLIVLDMHLPDVSGLEVLEALKSSP 83
Query: 61 FTFREIPTVIISSENILARIDR 82
+ IP +++SS A +DR
Sbjct: 84 TPLKRIPVLVLSSSTEQATVDR 105
>gi|418937914|ref|ZP_13491499.1| response regulator receiver modulated metal dependent
phosphohydrolase [Rhizobium sp. PDO1-076]
gi|375055405|gb|EHS51668.1| response regulator receiver modulated metal dependent
phosphohydrolase [Rhizobium sp. PDO1-076]
Length = 377
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DL++ DY MP M G E+I++++ +++ +P ++++SE
Sbjct: 47 DLVLVDYTMPRMNGVEVIRQLRANP-SYQHVPIIMVTSE 84
>gi|335035855|ref|ZP_08529186.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. ATCC 31749]
gi|333792771|gb|EGL64137.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. ATCC 31749]
Length = 681
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 36 DLIITDYCMPGMTGCELIKKIK 57
DL+ITDY MPGMTG EL K ++
Sbjct: 615 DLVITDYSMPGMTGAELAKAVR 636
>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 229
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGLQFIKHLKRESMT-RDIPVVMLTA 84
>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
[Ruegeria sp. TM1040]
Length = 229
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 17 SDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+DGF + + E +L V D+I+ D+ MP +TG E+ +++K ++ T R IP +++
Sbjct: 27 ADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEICRRLKTRTDT-RSIPIIML 85
Query: 72 SSEN 75
S+ +
Sbjct: 86 SARS 89
>gi|387814803|ref|YP_005430290.1| hypothetical protein MARHY2394 [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339820|emb|CCG95867.1| Conserved hypothetical protein, putative Phosphorylation;
Two-component regulatory system [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 250
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 2 TTTNGVLLSRLMSDGSDGFDLSPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKL 58
++T +LLSRL+ T + +L DLI D+ +PGM G + ++++K
Sbjct: 12 SSTARILLSRLLERADISTKGVATAEQAFPLLQQEHFDLIFLDHLLPGMNGFQALERLKQ 71
Query: 59 QSFTFREIPTVIISSEN 75
Q T R+IP + +S+N
Sbjct: 72 QPET-RDIPVFMYTSQN 87
>gi|333909830|ref|YP_004483416.1| winged helix family two component transcriptional regulator PhoB
[Marinomonas posidonica IVIA-Po-181]
gi|333479836|gb|AEF56497.1| two component transcriptional regulator PhoB, winged helix family
[Marinomonas posidonica IVIA-Po-181]
Length = 231
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DLI+ D+ MPG +G EL ++IK S T EIP +++++++
Sbjct: 49 DLILVDWMMPGGSGIELTRRIKKDSTTA-EIPVIMLTAKS 87
>gi|261410004|ref|YP_003246245.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
gi|261286467|gb|ACX68438.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
Length = 1045
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
DL+I+D MP M+G EL ++I+ + FT E+P +++++ +
Sbjct: 765 DLVISDIMMPQMSGYELTRRIR-ERFTLTELPVLLLTARS 803
>gi|163785263|ref|ZP_02179927.1| chemotaxis signal transduction protein CheV [Hydrogenivirga sp.
128-5-R1-1]
gi|159879470|gb|EDP73310.1| chemotaxis signal transduction protein CheV [Hydrogenivirga sp.
128-5-R1-1]
Length = 114
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 8 LLSRLMSDGSD-GFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREI 66
+LS+L+ + + G D+ TD V LI++D MPGM G K+IK Q F +I
Sbjct: 15 ILSKLLQEAKEEGMDI--TDK-------VQLIVSDIEMPGMDGLTFTKRIK-QHPEFSKI 64
Query: 67 PTVIISSENILARIDR 82
P +I +S + A +D+
Sbjct: 65 PVIINTSLSDKATVDK 80
>gi|423227451|ref|ZP_17213912.1| hypothetical protein HMPREF1062_06098 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392623081|gb|EIY17187.1| hypothetical protein HMPREF1062_06098 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 1347
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+LIITD MPGM G EL K+K F IP +I++++
Sbjct: 1142 NLIITDIMMPGMNGLELCNKLK-NDFHTSHIPVIILTAK 1179
>gi|224535251|ref|ZP_03675790.1| hypothetical protein BACCELL_00112, partial [Bacteroides
cellulosilyticus DSM 14838]
gi|224523136|gb|EEF92241.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus
DSM 14838]
Length = 981
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+LIITD MPGM G EL K+K F IP +I++++
Sbjct: 776 NLIITDIMMPGMNGLELCNKLK-NDFHTSHIPVIILTAK 813
>gi|188592079|ref|YP_001796677.1| chemotactic response regulator, transmits chemoreceptor signals
to flagelllar motor components [Cupriavidus taiwanensis
LMG 19424]
gi|170938453|emb|CAP63440.1| chemotactic response regulator, transmits chemoreceptor signals
to flagelllar motor components [Cupriavidus taiwanensis
LMG 19424]
Length = 130
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 17 SDGFDLS-PTDTEEVHVLAV----DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
+ GFD++ D ++ H LAV +++TD MPGM G LI+ ++ + + +P +++
Sbjct: 25 AGGFDVTEAADGDQAHALAVAGSFGMLVTDQVMPGMDGLTLIRSLR-ATPRYARMPILML 83
Query: 72 SSEN 75
++E
Sbjct: 84 TTEQ 87
>gi|148546766|ref|YP_001266868.1| response regulator receiver protein [Pseudomonas putida F1]
gi|386011111|ref|YP_005929388.1| Response regulator receiver protein [Pseudomonas putida BIRD-1]
gi|395448038|ref|YP_006388291.1| response regulator receiver protein [Pseudomonas putida ND6]
gi|397695181|ref|YP_006533062.1| response regulator receiver protein [Pseudomonas putida DOT-T1E]
gi|421525266|ref|ZP_15971884.1| Response regulator receiver protein [Pseudomonas putida LS46]
gi|148510824|gb|ABQ77684.1| response regulator receiver protein [Pseudomonas putida F1]
gi|313497817|gb|ADR59183.1| Response regulator receiver protein [Pseudomonas putida BIRD-1]
gi|388562035|gb|AFK71176.1| response regulator receiver protein [Pseudomonas putida ND6]
gi|397331911|gb|AFO48270.1| response regulator receiver protein [Pseudomonas putida DOT-T1E]
gi|402751004|gb|EJX11520.1| Response regulator receiver protein [Pseudomonas putida LS46]
Length = 128
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM+G +L++K++ S + +P +++++E
Sbjct: 51 DFLVTDWNMPGMSGIDLLRKVR-ASDKLKSMPVLMVTAE 88
>gi|423334207|ref|ZP_17311988.1| hypothetical protein HMPREF1075_03639 [Parabacteroides distasonis
CL03T12C09]
gi|409225970|gb|EKN18884.1| hypothetical protein HMPREF1075_03639 [Parabacteroides distasonis
CL03T12C09]
Length = 1315
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
+ LII+D MP M G L+KKIK + F IP ++++++N L
Sbjct: 1104 GIQLIISDIMMPVMDGFTLLKKIK-TNLEFSHIPIILLTAKNTL 1146
>gi|406926156|gb|EKD62445.1| two-component system response regulator [uncultured bacterium]
Length = 121
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
++G DL E++ + DLII D MP G E +K+IKL S ++ IP +I S+
Sbjct: 32 ANGIDL----LEQLKSYSPDLIILDLVMPNKDGFETLKEIKLNS-QWKNIPVIIASN 83
>gi|374815338|ref|ZP_09719075.1| two-component hybrid sensor and regulator [Treponema primitia
ZAS-1]
Length = 237
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 7 VLLSRLMSDGSDGFDLSPTDTEEVHVLAV-----DLIITDYCMPGMTGCELIKKIKLQSF 61
V+LS+L GFD+ + E + V DLII D MP M+G EL K +K
Sbjct: 22 VILSKL------GFDVDKAEDGEAALEMVKRFHPDLIILDNIMPKMSGWELTKLLKADP- 74
Query: 62 TFREIPTVIISS 73
++EIP +++S+
Sbjct: 75 KYQEIPIIMLSA 86
>gi|144897546|emb|CAM74410.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Magnetospirillum gryphiswaldense MSR-1]
Length = 565
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
DLII DY +PG+ G EL ++I + + T R IP +I++++ A
Sbjct: 52 DLIIVDYHLPGIQGDELCRQIHM-NLTTRSIPILILTADETQA 93
>gi|436842680|ref|YP_007327058.1| chemotaxis regulator transmitting signal to flagellar motor
component [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171586|emb|CCO24959.1| chemotaxis regulator transmitting signal to flagellar motor
component [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 127
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+++ I++D+ MP MTG EL++K++ S F ++P +++++E
Sbjct: 52 SIEFIVSDWNMPQMTGIELLRKVR-SSEEFADLPFLMVTAE 91
>gi|197106694|ref|YP_002132071.1| chemotaxis protein CheY [Phenylobacterium zucineum HLK1]
gi|196480114|gb|ACG79642.1| chemotaxis protein CheYII [Phenylobacterium zucineum HLK1]
Length = 128
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
R + D +DG PT E++ LI++D+ M MTG +L+K ++ + T +++P V+
Sbjct: 32 RNVDDATDG----PTALEKIKHKDYGLILSDWNMQPMTGYDLLKAVRAEPRT-KDVPFVM 86
Query: 71 ISSE 74
+++E
Sbjct: 87 VTAE 90
>gi|389693079|ref|ZP_10181173.1| signal transduction histidine kinase [Microvirga sp. WSM3557]
gi|388586465|gb|EIM26758.1| signal transduction histidine kinase [Microvirga sp. WSM3557]
Length = 600
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQ 59
++DL++TD+ MPGMTG EL ++I+ +
Sbjct: 517 SIDLVVTDHAMPGMTGLELAERIRTE 542
>gi|119492933|ref|ZP_01623963.1| sensor histidine kinase [Lyngbya sp. PCC 8106]
gi|119452859|gb|EAW34033.1| sensor histidine kinase [Lyngbya sp. PCC 8106]
Length = 691
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 3 TTNGVLLSRLMSDGSDGFDLSPTDT-----EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57
+ N + RL+ S GF + D E+V DL+ITD MP + G E+I++++
Sbjct: 566 SENRSVFKRLLE--SLGFTVQEADNGKQGIEQVKAFEPDLVITDLIMPVLDGLEMIQQLR 623
Query: 58 LQSFTFREIPTVIIS 72
L S ++ +P ++ S
Sbjct: 624 LSS-EYQNLPIIVAS 637
>gi|430005174|emb|CCF20975.1| Sensor protein [Rhizobium sp.]
Length = 681
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 36 DLIITDYCMPGMTGCELIKKIK 57
DL+ITDY MPGMTG EL+K +
Sbjct: 615 DLLITDYSMPGMTGAELVKAAR 636
>gi|91792702|ref|YP_562353.1| response regulator receiver [Shewanella denitrificans OS217]
gi|91714704|gb|ABE54630.1| response regulator receiver protein [Shewanella denitrificans
OS217]
Length = 127
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + + +P +++++E
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADD-SLKHLPVLMVTAE 88
>gi|423337683|ref|ZP_17315427.1| hypothetical protein HMPREF1059_01352 [Parabacteroides distasonis
CL09T03C24]
gi|409236947|gb|EKN29751.1| hypothetical protein HMPREF1059_01352 [Parabacteroides distasonis
CL09T03C24]
Length = 1324
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
+ LII+D MP M G L+KKIK + F IP ++++++N L
Sbjct: 1113 GIQLIISDIMMPVMDGFTLLKKIK-TNLEFSHIPIILLTAKNTL 1155
>gi|404401813|ref|ZP_10993397.1| protein CheY [Pseudomonas fuscovaginae UPB0736]
Length = 127
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++D ++TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 49 SIDFLVTDWNMPGMTGIDLLRHVRADE-KLKHLPVLMVTAE 88
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,170,293,622
Number of Sequences: 23463169
Number of extensions: 37232071
Number of successful extensions: 134366
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 2117
Number of HSP's that attempted gapping in prelim test: 133364
Number of HSP's gapped (non-prelim): 2846
length of query: 82
length of database: 8,064,228,071
effective HSP length: 53
effective length of query: 29
effective length of database: 6,820,680,114
effective search space: 197799723306
effective search space used: 197799723306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)