BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039883
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITAEGGKAEV 96
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 96
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++IT + MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 54 VLITAWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 96
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
D ++TD+ MPGM G +L+K I+ + +P ++I++E
Sbjct: 59 DFVVTDWNMPGMQGIDLLKNIRADE-ELKHLPVLMITAE 96
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIK-LQSFTFREIPTVIISSE 74
D +I D MPGM G +++K+++ +Q+ R P V++S++
Sbjct: 60 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ ++ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ + +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In
Complex With Chez 200-214 Solved From A F432 Crystal
Grown In Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In
Complex With Chez 200-214 Solved From A P2(1)2(1)2
Crystal Grown In Mes (Ph 6.0)
Length = 129
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
II+D+ MP M G EL+K I+ S +P +++++ ENI+A
Sbjct: 53 FIISDWNMPNMDGLELLKTIRADS-AMSALPVLMVTAEAKKENIIA 97
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The
Mechanism Of Phosphoryl Transfer In Bacterial
Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex
With Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex
With Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex
With Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With
Chez(c15) Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With
Chez(c15) Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With
Chez(c15) Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With
Chez(c15) Peptide Solved From A P1 Crystal
Length = 128
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
II+D+ MP M G EL+K I+ S +P +++++ ENI+A
Sbjct: 52 FIISDWNMPNMDGLELLKTIRADS-AMSALPVLMVTAEAKKENIIA 96
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ + +PG +G + IK ++ +S T R+IP V++++
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMT-RDIPVVMLTA 84
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The
P21-Like Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 13 MSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
+ D DG D ++ +I+D+ MP M G EL+K I+ +P ++++
Sbjct: 32 VEDAEDGVDA----LNKLQAGGYGFVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVT 86
Query: 73 S----ENILA 78
+ ENI+A
Sbjct: 87 AEAKKENIIA 96
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P ++++S ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTSEAKKENIIA 97
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
II D+ MP M G EL+K I+ S +P +++++ ENI+A
Sbjct: 52 FIICDWNMPNMDGLELLKTIRADS-AMSALPVLMVTAEAKKENIIA 96
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
D+I+ D MPGM G + +K+K T R IP V+I++
Sbjct: 48 DIILLDVMMPGMDGFTVCRKLK-DDPTTRHIPVVLITA 84
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADG-AMSALPVLMVTALAKKENIIA 96
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With
C-Digmp And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With
C-Digmp And Gtp-Alpha-S
Length = 459
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
D+I+ D MPGM G + +K+K T R IP V+I++
Sbjct: 47 DIILLDVMMPGMDGFTVCRKLK-DDPTTRHIPVVLITA 83
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADG-AMSALPVLMVTARAKKENIIA 96
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTARAKKENIIA 96
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 97
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 97
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 98
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey
From Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey
From Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1
A Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1
A Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The
N- Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The
N- Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein
Chey Results In Large Conformational Changes Involving
Its Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At
1.7- Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 93
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From
Escherichia Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 97
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 98
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To
Beryllium Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To
Beryllium Fluoride
Length = 128
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 51 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 95
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 97
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+I+D+ MP M G EL+K I+ +P +++++E
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAE 89
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey
Mutant
Length = 128
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+I+D+ MP M G EL+K I+ +P +++++E
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTAE 88
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWKMPNMDGLELLKTIRADG-AMSALPVLMVTAYAKKENIIA 96
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTTEAKKENIIA 97
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRAXX-AMSALPVLMVTAEAKKENIIA 96
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISDWRMPNMDGLELLKTIRADG-AMSALPVLMVTAHAKKENIIA 96
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated
Dephosphorylation Of The E. Coli Chemotaxis Response
Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated
Dephosphorylation Of The E. Coli Chemotaxis Response
Regulator Chey
Length = 129
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISDWRMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 97
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADG-AMSALPVLMVTAQAKKENIIA 100
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADG-AMSALPVLMVTARAKKENIIA 100
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADG-AMSALPVLMVTAKAKKENIIA 100
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADG-AMSALPVLMVTAYAKKENIIA 100
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS----SENILA 78
+I+D+ MP M G EL+K I+ +P ++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTVEAKKENIIA 97
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS----SENILA 78
+I+D+ MP M G EL+K I+ +P ++++ ENI+A
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVTMEAKKENIIA 97
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII----SSENILA 78
+I+D+ MP M G EL+K I+ +P +++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVIAEAKKENIIA 96
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine
To Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine
To Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII----SSENILA 78
+I+D+ MP M G EL+K I+ +P +++ ENI+A
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMVIAEAKKENIIA 96
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 23 SPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
P E D+++ D +PGM+G ++ K+++ +S +P +++++ +
Sbjct: 37 GPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARS----SVPVIMVTARD 85
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+D+ MP M G EL+K I+ +P ++ ++ ENI+A
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADG-AMSALPVLMTTAEAKKENIIA 93
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
DL+I D P + G ELI++I+ T E P +++S +++
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQ---TASETPIIVLSGAGVMS 90
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D++++D MPGM G L+K+IK + +P +I+++ + L
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPM---LPVIIMTAHSDL 87
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D++++D MPGM G L+K+IK + +P +I+++ + L
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPM---LPVIIMTAHSDL 87
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D++++D MPGM G L+K+IK + +P +I+++ + L
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPM---LPVIIMTAHSDL 87
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator
Complex Reveals Insights Into Two-component Signaling
And A Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator
Complex Reveals Insights Into Two-component Signaling
And A Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator
Complex Reveals Insights Into Two-Component Signaling
And A Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+ D MP M G ++KK++ + ++ IP ++++++
Sbjct: 48 DLIVLDIMMPVMDGFTVLKKLQ-EKEEWKRIPVIVLTAK 85
>pdb|2G4R|A Chain A, Anomalous Substructure Of Moga
pdb|2G4R|B Chain B, Anomalous Substructure Of Moga
pdb|2G4R|C Chain C, Anomalous Substructure Of Moga
Length = 160
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 17 SDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
S G +SPTDT H +AV DY +PG+ + I++ L ++PT ++S
Sbjct: 69 SGGTGISPTDTTPEHTVAV----LDYVIPGL--ADAIRRSGLP-----KVPTSVLS 113
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox
Response Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox
Response Regulator Arca
Length = 123
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 4 TNGVLLSRLMSDGSDGFDLSPTDTEEVHVLA----VDLIITDYCMPGMTGCELIKKIKLQ 59
T L S ++G D F+ TD E+H + ++L+I D +PG G L ++++ Q
Sbjct: 15 TRNTLKSIFEAEGYDVFE--ATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ 72
Query: 60 S 60
+
Sbjct: 73 A 73
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain
Of Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain
Of Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 19 GFDLS--PTDTEEVHVLAVD---LIITDYCMPGMTGCELIKKI 56
GF +S + TE + L+ D ++I+D MPGM G L +KI
Sbjct: 27 GFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKI 69
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker
Region Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 19 GFDLS--PTDTEEVHVLAVD---LIITDYCMPGMTGCELIKKI 56
GF +S + TE + L+ D ++I+D MPGM G L +KI
Sbjct: 27 GFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKI 69
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 12 LMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71
L +DG D +L T DL+I D MP M G +L++ I+ + + P ++I
Sbjct: 36 LAADGVDALELLGGFTP-------DLMICDIAMPRMNGLKLLEHIRNRG---DQTPVLVI 85
Query: 72 SSENILARIDR 82
S+ +A I +
Sbjct: 86 SATENMADIAK 96
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain
Of Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain
Of Redox Response Regulator Arca
Length = 123
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 4 TNGVLLSRLMSDGSDGFDLSPTDTEEVHVLA----VDLIITDYCMPGMTGCELIKKIKLQ 59
T L S ++G D F+ TD E H + ++L+I D +PG G L ++++ Q
Sbjct: 15 TRNTLKSIFEAEGYDVFE--ATDGAEXHQILSEYDINLVIXDINLPGKNGLLLARELREQ 72
Query: 60 S 60
+
Sbjct: 73 A 73
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
DLII+D MP M G L + +K Q R IP ++++
Sbjct: 53 DLIISDVLMPEMDGYALCRWLKGQP-DLRTIPVILLT 88
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E++K++K+
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKV 71
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator,
Luxr Family, From Staphylococcus Aureus
Length = 133
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREI 66
+++I D MPGMTG E++ +I+ + + I
Sbjct: 51 NVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay
Proteins Trapped In A Crystal Lattice Reveals The
Mechanism Of Molecular Recognition And Phosphotransfer
In Singal Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay
Proteins Trapped In A Crystal Lattice Reveals The
Mechanism Of Molecular Recognition And Phosphotransfer
In Singal Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay
Proteins Trapped In A Crystal Lattice Reveals The
Mechanism Of Molecular Recognition And Phosphotransfer
In Singal Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay
Proteins Trapped In A Crystal Lattice Reveals The
Mechanism Of Molecular Recognition And Phosphotransfer
In Singal Transduction
Length = 119
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E++K++K+
Sbjct: 47 DLVLLDMKIPGMDGIEILKRMKV 69
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E++K++K+
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKV 71
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E++K++K+
Sbjct: 51 DLVLLDMKIPGMDGIEILKRMKV 73
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E++K++K+
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKV 71
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f
Protein, 20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f
Protein, Minimized Average Structure
Length = 124
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E++K++K+
Sbjct: 49 DLVLLDMKIPGMDGIEILKRMKV 71
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78
DL+I D P + G ELI++I+ T E P +++S + +
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQ---TASETPIIVLSGAGVXS 90
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+ + MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 53 FVISXWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 97
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+ + MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISAWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
+I+ + MP M G EL+K I+ +P +++++ ENI+A
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADG-AMSALPVLMVTAEAKKENIIA 96
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ D +PGM G E+ K++K+
Sbjct: 49 DLVLLDMKIPGMDGIEIAKRMKV 71
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus
(Residues 817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 11 RLMSD--GSDGFDLSPTD--TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTF 63
RL++D GS G+ + + ++VL+ +D++++D MP M G L ++I+ T
Sbjct: 22 RLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTL 81
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77
D++++ MPGM G L+K+IK + +P +I+++ + L
Sbjct: 49 DVLLSXIRMPGMDGLALLKQIKQRHPM---LPVIIMTAHSDL 87
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DLI+ MP M G ++KK++ + ++ IP ++++++
Sbjct: 48 DLIVLXIMMPVMDGFTVLKKLQ-EKEEWKRIPVIVLTAK 85
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 11 RLMSD--GSDGFDLSPTD--TEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQSFTF 63
RL++D GS G+ + + ++VL+ +D++++D MP M G L ++I+ T
Sbjct: 143 RLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTL 202
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLI 38
GS G LSP D +E +V + DL+
Sbjct: 110 GSAGSKLSPEDVDEEYVKSADLV 132
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 36 DLIITDYCMPGMTGCELIKKIKL 58
DL++ +PGM G E++K++K+
Sbjct: 49 DLVLLXMKIPGMDGIEILKRMKV 71
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
V L DL++ D +PGM G ++ + ++ S +P V+++++
Sbjct: 45 VRELRPDLVLLDLMLPGMNGIDVCRVLRADS----GVPIVMLTAK 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,206,733
Number of Sequences: 62578
Number of extensions: 71330
Number of successful extensions: 247
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 83
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)