BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039883
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana
GN=ARR4 PE=1 SV=1
Length = 259
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
+ E L VDLIITDYCMPGMTG EL+KKIK +S FRE+P VI+SSEN+L RIDR
Sbjct: 81 SAEFDRLKVDLIITDYCMPGMTGYELLKKIK-ESSNFREVPVVIMSSENVLTRIDR 135
>sp|Q9ZWS9|ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana
GN=ARR3 PE=2 SV=1
Length = 231
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Query: 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
E L VDLIITDYCMPGMTG EL+KKIK +S +F+E+P VI+SSEN++ RIDR
Sbjct: 82 EFDRLKVDLIITDYCMPGMTGYELLKKIK-ESTSFKEVPVVIMSSENVMTRIDR 134
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana
GN=ARR9 PE=1 SV=1
Length = 234
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 14 SDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
S+ + F +P + + V+ V+LIITDYCMPGMTG +L+KK+K +S FR+IP VI+SS
Sbjct: 56 SNDPNAFSKAPVNHQ---VVEVNLIITDYCMPGMTGYDLLKKVK-ESSAFRDIPVVIMSS 111
Query: 74 ENILARIDR 82
EN+ ARI R
Sbjct: 112 ENVPARISR 120
>sp|Q9SB04|ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana
GN=ARR5 PE=1 SV=2
Length = 184
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 16 GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75
G DG + S E+ L ++LI+TDY MPGMTG EL+KKIK +S FREIP VI+SSEN
Sbjct: 65 GLDGENNSSVGFED---LKINLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVIMSSEN 120
Query: 76 ILARIDR 82
IL RIDR
Sbjct: 121 ILPRIDR 127
>sp|Q9ZWS6|ARR6_ARATH Two-component response regulator ARR6 OS=Arabidopsis thaliana
GN=ARR6 PE=1 SV=2
Length = 186
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 26 DTEEVHV----LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
D EE V L V+LI+TDY MPGMTG EL+KKIK +S FRE+P VI+SSENIL RID
Sbjct: 67 DVEEKSVGFEDLKVNLIMTDYSMPGMTGYELLKKIK-ESSAFREVPVVIMSSENILPRID 125
Query: 82 R 82
R
Sbjct: 126 R 126
>sp|O80365|ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana
GN=ARR8 PE=1 SV=1
Length = 225
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 11 RLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70
R+ + + SP +EV + +LIITDYCMPGMTG +L+KK+K +S FR IP VI
Sbjct: 51 RVDDNDPNALSTSPQIHQEVEI---NLIITDYCMPGMTGYDLLKKVK-ESAAFRSIPVVI 106
Query: 71 ISSENILARIDR 82
+SSEN+ ARI R
Sbjct: 107 MSSENVPARISR 118
>sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana
GN=ARR17 PE=2 SV=1
Length = 153
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 24 PTDTEEV-HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
P T+ + +V+ V+LIITDYCMPGMTG EL+KK+K +S +E+P VI+SSENI RI++
Sbjct: 64 PQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVK-ESSNLKEVPVVILSSENIPTRINK 122
>sp|Q9SHC2|ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana
GN=ARR16 PE=1 SV=1
Length = 164
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
D +V+ V LIITDYCMPGMTG EL+KK+K +S RE+P VI+SSENI RI++
Sbjct: 78 DALTCNVMKVSLIITDYCMPGMTGFELLKKVK-ESSNLREVPVVIMSSENIPTRINK 133
>sp|Q7G8V2|ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana
GN=ARR15 PE=1 SV=1
Length = 206
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARIDR 82
L V+LI+TDY MPG+TG EL+KKIK +S REIP VI+SSENI RI++
Sbjct: 71 LKVNLIVTDYSMPGLTGYELLKKIK-ESSALREIPVVIMSSENIQPRIEQ 119
>sp|Q9ZWS7|ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana
GN=ARR7 PE=1 SV=1
Length = 206
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81
L V+LI+TDY MPG++G +L+KKIK +S FRE+P VI+SSENIL RI
Sbjct: 77 LKVNLIVTDYSMPGLSGYDLLKKIK-ESSAFREVPVVIMSSENILPRIQ 124
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MPGM G +L K+I + F +P +++SS+
Sbjct: 62 IDLIITDYYMPGMNGLQLKKQITQE---FGNLPVLVMSSD 98
>sp|P71403|CHEY_HELPY Chemotaxis protein CheY homolog OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=cheY PE=1 SV=2
Length = 124
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++ITD+ MP M G +L+KK++ S F+EIP ++I++E A +
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRSDS-RFKEIPIIMITTEGGKAEV 91
>sp|A1W0A5|CHEY_CAMJJ Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=cheY PE=3
SV=1
Length = 130
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 20 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 72
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 73 KYEDMPIIMVTTEGGKAEV 91
>sp|P0C635|CHEY_CAMJE Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=cheY PE=3
SV=1
Length = 130
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 20 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 72
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 73 KYEDMPIIMVTTEGGKAEV 91
>sp|A8FMH1|CHEY_CAMJ8 Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=cheY
PE=3 SV=1
Length = 130
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 9 LSRLMSD-------GSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSF 61
L+RL D G + +DL T E+V VL ITD+ MP M G EL+KK++ +
Sbjct: 20 LTRLGHDDVLEAEHGVEAWDLL-TKNEDVKVL-----ITDWNMPEMNGLELVKKVRAEK- 72
Query: 62 TFREIPTVIISSENILARI 80
+ ++P +++++E A +
Sbjct: 73 KYEDMPIIMVTTEGGKAEV 91
>sp|Q9ZM64|CHEY_HELPJ Chemotaxis protein CheY homolog OS=Helicobacter pylori (strain
J99) GN=cheY PE=3 SV=1
Length = 124
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
++ITD+ MP M G +L+KK++ + F+EIP ++I++E
Sbjct: 49 VLITDWNMPEMNGLDLVKKVRADN-RFKEIPIIMITTE 85
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+DLIITDY MPGM G +L K+I + F + +++SS+
Sbjct: 65 IDLIITDYYMPGMNGLQLKKQITQE---FGNLSVLVMSSD 101
>sp|P0AFJ5|PHOB_ECOLI Phosphate regulon transcriptional regulatory protein PhoB
OS=Escherichia coli (strain K12) GN=phoB PE=1 SV=1
Length = 229
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>sp|P0AFJ6|PHOB_ECO57 Phosphate regulon transcriptional regulatory protein PhoB
OS=Escherichia coli O157:H7 GN=phoB PE=3 SV=1
Length = 229
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>sp|P45606|PHOB_SHIDY Phosphate regulon transcriptional regulatory protein PhoB
OS=Shigella dysenteriae GN=phoB PE=3 SV=1
Length = 229
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>sp|P45607|PHOB_SHIFL Phosphate regulon transcriptional regulatory protein PhoB
OS=Shigella flexneri GN=phoB PE=3 SV=2
Length = 229
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K +S T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMT-RDIPVVMLTA 84
>sp|Q51455|CHEY_PSEAE Chemotaxis protein CheY OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cheY PE=1
SV=1
Length = 124
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
+H D ++TD+ MPGMTG +L++ ++ + +P +++++E
Sbjct: 41 LHSGNFDFLVTDWNMPGMTGIDLLRAVRADE-RLKHLPVLMVTAE 84
>sp|P23620|PHOB_PSEAE Phosphate regulon transcriptional regulatory protein PhoB
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=phoB PE=3 SV=2
Length = 229
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 19 GFD-LSPTDTEEVHVLAVD----LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
G++ L +T++ H + VD LI+ D+ +PG +G EL +++K T +IP +++++
Sbjct: 27 GYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIELARRLKRDELTV-DIPIIMLTA 85
Query: 74 EN 75
+
Sbjct: 86 KG 87
>sp|P45605|PHOB_KLEPN Phosphate regulon transcriptional regulatory protein PhoB
OS=Klebsiella pneumoniae GN=phoB PE=3 SV=1
Length = 229
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DLI+ D+ +PG +G + IK +K ++ T R+IP V++++
Sbjct: 48 DLILLDWMLPGGSGLQFIKLLKREAMT-RDIPVVMLTA 84
>sp|Q4UU85|RPFG_XANC8 Cyclic di-GMP phosphodiesterase response regulator RpfG
OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=rpfG PE=1 SV=1
Length = 378
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72
VDL++ DY MPGM G E ++++ + + R+IP ++I+
Sbjct: 74 VDLLLLDYRMPGMDGLEFARRLR-RLPSHRDIPIILIT 110
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIK-LQSFTFREIPTVIISSE 74
D +I D MPGM G +++K+++ +Q+ R P V++S++
Sbjct: 507 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 546
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIK-LQSFTFREIPTVIISSE 74
D +I D MPGM G +++K+++ +Q+ R P V++S++
Sbjct: 507 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 546
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++DL++T+ MPG++G L+ +I + + IP +++SS + + +
Sbjct: 107 SIDLVLTEVVMPGVSGISLLSRIMNHNIC-KNIPVIMMSSNDAMGTV 152
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
++DL++T+ MPG++G L+ +I + + IP +++SS + + +
Sbjct: 107 SIDLVLTEVVMPGVSGISLLSRIMNHNIC-KNIPVIMMSSNDAMGTV 152
>sp|P62646|CHEB_TREDE Chemotaxis response regulator protein-glutamate methylesterase
OS=Treponema denticola (strain ATCC 35405 / CIP 103919
/ DSM 14222) GN=cheB PE=3 SV=1
Length = 372
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
+++ +A D+I+ D MP M G E ++++K Q+ +IP VI+SS
Sbjct: 43 QKLERVAPDVIVLDLEMPEMNGIEFLRELKKQNI---KIPVVILSS 85
>sp|Q99U73|ARLR_STAAN Response regulator ArlR OS=Staphylococcus aureus (strain N315)
GN=arlR PE=3 SV=2
Length = 214
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|P0C001|ARLR_STAAW Response regulator ArlR OS=Staphylococcus aureus (strain MW2)
GN=arlR PE=3 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|Q6G9E6|ARLR_STAAS Response regulator ArlR OS=Staphylococcus aureus (strain MSSA476)
GN=arlR PE=3 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|Q6GGZ3|ARLR_STAAR Response regulator ArlR OS=Staphylococcus aureus (strain MRSA252)
GN=arlR PE=3 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|P0C000|ARLR_STAAM Response regulator ArlR OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=arlR PE=1 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|Q5HG04|ARLR_STAAC Response regulator ArlR OS=Staphylococcus aureus (strain COL)
GN=arlR PE=3 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|Q2YY03|ARLR_STAAB Response regulator ArlR OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=arlR PE=3 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|Q9KJN4|ARLR_STAA8 Response regulator ArlR OS=Staphylococcus aureus (strain NCTC
8325) GN=arlR PE=1 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|Q2FH23|ARLR_STAA3 Response regulator ArlR OS=Staphylococcus aureus (strain USA300)
GN=arlR PE=3 SV=1
Length = 219
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 15 DGSDGFDLSPTDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
DG DG D + + DLII D +P + G E+ +KI+ Q T P +II+++
Sbjct: 33 DGQDGLDKALSH-------YYDLIILDLMLPSINGLEICRKIRQQQST----PIIIITAK 81
>sp|P0A2D5|CHEY_SALTY Chemotaxis protein CheY OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cheY PE=1 SV=2
Length = 129
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
II+D+ MP M G EL+K I+ S +P +++++ ENI+A
Sbjct: 53 FIISDWNMPNMDGLELLKTIRADS-AMSALPVLMVTAEAKKENIIA 97
>sp|P0A2D6|CHEY_SALTI Chemotaxis protein CheY OS=Salmonella typhi GN=cheY PE=3 SV=2
Length = 129
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS----ENILA 78
II+D+ MP M G EL+K I+ S +P +++++ ENI+A
Sbjct: 53 FIISDWNMPNMDGLELLKTIRADS-AMSALPVLMVTAEAKKENIIA 97
>sp|O05251|MALR_BACSU Transcriptional regulatory protein MalR OS=Bacillus subtilis
(strain 168) GN=malR PE=3 SV=1
Length = 235
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 6 GVLLSRLMSDGSDGFDL---SPTDTEEVHVLA---VDLIITDYCMPGMTGCELIKKIKLQ 59
G L R +S DGF L + + +H+L +DLI+ D MPG G EL+ +++ Q
Sbjct: 14 GELNKRYLSQ-IDGFQLKGIASSFQSALHILGEHHIDLILLDIYMPGKNGLELLTELRAQ 72
Query: 60 S 60
+
Sbjct: 73 N 73
>sp|P29267|HOXA_CUPNH Hydrogenase transcriptional regulatory protein HoxA
OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier 337) GN=hoxA PE=3 SV=2
Length = 482
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS----SENILARID 81
V +I+ D MPG+TG E +K+++ + + EI ++IS SE+I+A ++
Sbjct: 49 VSVILCDQRMPGLTGVEFLKEVRER---WPEIVRIVISGYTDSEDIIAGVN 96
>sp|Q750W3|RKM5_ASHGO Ribosomal N-lysine methyltransferase 5 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RKM5 PE=3 SV=1
Length = 317
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 22 LSPTDTEEVHVLAVDLIITDYCMP 45
L PTD VHVLA+D++ D+ +P
Sbjct: 224 LRPTDAAHVHVLALDVVYNDFLIP 247
>sp|Q52990|PHOB_RHIME Phosphate regulon transcriptional regulatory protein PhoB
OS=Rhizobium meliloti (strain 1021) GN=phoB PE=3 SV=1
Length = 227
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
DL+I D+ +PG++G EL ++++ + T R +P +++++
Sbjct: 48 DLLILDWMLPGVSGIELCRRLRQRPETER-LPIIMLTA 84
>sp|O31517|YESN_BACSU Uncharacterized transcriptional regulatory protein YesN
OS=Bacillus subtilis (strain 168) GN=yesN PE=3 SV=1
Length = 368
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 37 LIITDYCMPGMTGCELIKKIKLQS 60
++ITD MPGM G ELIKK+ S
Sbjct: 51 IVITDVKMPGMDGLELIKKVSAVS 74
>sp|Q54SP4|DHKD_DICDI Hybrid signal transduction histidine kinase D OS=Dictyostelium
discoideum GN=dhkD PE=2 SV=1
Length = 1546
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74
E+ + DLI+TD MP M+G E++++++ F IP ++++++
Sbjct: 606 EKTRAITPDLIVTDCMMPRMSGDEMVEQLRSDE-QFDNIPILLLTAK 651
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+DL++T+ MP ++G L+ KI ++IP +++SS + + +
Sbjct: 127 IDLVLTEVVMPRLSGIGLLSKITSHKIC-KDIPVIMMSSNDSMGTV 171
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80
+DL++T+ MP ++G L+ KI ++IP +++SS + + +
Sbjct: 127 IDLVLTEVVMPRLSGIGLLSKITSHKIC-KDIPVIMMSSNDSMGTV 171
>sp|Q9A5I5|PLED_CAUCR Response regulator PleD OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=pleD PE=1 SV=1
Length = 454
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73
D+I+ D MPGM G + +K+K T R IP V+I++
Sbjct: 48 DIILLDVMMPGMDGFTVCRKLK-DDPTTRHIPVVLITA 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,023,038
Number of Sequences: 539616
Number of extensions: 911853
Number of successful extensions: 2147
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2086
Number of HSP's gapped (non-prelim): 98
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)