Query 039883
Match_columns 82
No_of_seqs 106 out of 2222
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 02:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.4 1E-12 2.2E-17 73.6 7.1 74 2-78 7-85 (229)
2 COG2204 AtoC Response regulato 99.4 2.7E-12 5.8E-17 77.6 6.9 76 2-80 11-91 (464)
3 COG4566 TtrR Response regulato 99.4 1.2E-11 2.5E-16 66.9 8.1 75 2-79 11-90 (202)
4 COG4565 CitB Response regulato 99.3 9.3E-12 2E-16 68.4 7.2 70 9-81 15-90 (224)
5 COG4753 Response regulator con 99.3 1.3E-11 2.8E-16 74.8 6.5 77 2-81 8-92 (475)
6 COG2197 CitB Response regulato 99.2 5.5E-11 1.2E-15 66.0 6.6 77 2-81 7-90 (211)
7 COG3437 Response regulator con 99.2 1.2E-10 2.7E-15 68.1 6.8 79 2-80 21-104 (360)
8 PF00072 Response_reg: Respons 99.2 6.1E-11 1.3E-15 59.2 4.6 60 17-79 20-85 (112)
9 COG3947 Response regulator con 99.1 4.5E-10 9.8E-15 64.6 5.5 73 2-77 7-84 (361)
10 COG3706 PleD Response regulato 99.0 2.1E-09 4.5E-14 64.9 7.0 75 4-79 141-220 (435)
11 KOG0519 Sensory transduction h 98.9 7.6E-09 1.6E-13 66.6 7.8 69 10-80 683-755 (786)
12 PRK10046 dpiA two-component re 98.9 8E-09 1.7E-13 57.6 7.0 48 29-79 45-92 (225)
13 COG0784 CheY FOG: CheY-like re 98.9 1.8E-08 3.8E-13 51.4 7.2 58 18-78 30-92 (130)
14 PRK11107 hybrid sensory histid 98.9 1.1E-08 2.3E-13 66.2 6.8 61 18-79 692-755 (919)
15 PRK10841 hybrid sensory kinase 98.9 1E-08 2.3E-13 66.9 6.7 59 17-78 823-886 (924)
16 PLN03029 type-a response regul 98.8 7.8E-08 1.7E-12 53.8 8.4 44 35-79 73-116 (222)
17 PRK10816 DNA-binding transcrip 98.8 4E-08 8.7E-13 54.2 6.9 59 17-78 22-85 (223)
18 PRK10643 DNA-binding transcrip 98.8 5.1E-08 1.1E-12 53.5 6.8 46 30-78 40-85 (222)
19 PRK11475 DNA-binding transcrip 98.8 2.9E-08 6.2E-13 55.1 5.7 59 17-78 15-81 (207)
20 PRK11466 hybrid sensory histid 98.8 3.2E-08 7E-13 64.2 6.6 59 17-78 703-767 (914)
21 COG2201 CheB Chemotaxis respon 98.8 7.3E-08 1.6E-12 57.0 7.3 71 2-76 8-85 (350)
22 PRK10336 DNA-binding transcrip 98.8 6.9E-08 1.5E-12 53.0 6.9 46 30-78 40-85 (219)
23 TIGR02956 TMAO_torS TMAO reduc 98.8 4E-08 8.8E-13 64.0 6.7 62 17-79 726-791 (968)
24 PRK15029 arginine decarboxylas 98.8 6.8E-08 1.5E-12 62.0 7.5 60 14-76 27-96 (755)
25 PRK09468 ompR osmolarity respo 98.8 7.3E-08 1.6E-12 53.8 6.9 59 17-78 27-90 (239)
26 PRK15115 response regulator Gl 98.8 4.6E-08 1E-12 59.3 6.6 59 17-78 27-90 (444)
27 PRK09836 DNA-binding transcrip 98.8 6.9E-08 1.5E-12 53.4 6.8 46 30-78 40-85 (227)
28 PRK10529 DNA-binding transcrip 98.7 9E-08 2E-12 52.9 7.0 58 17-78 23-85 (225)
29 COG4567 Response regulator con 98.7 8.4E-08 1.8E-12 50.7 6.2 75 2-79 16-95 (182)
30 PRK13558 bacterio-opsin activa 98.7 5.9E-08 1.3E-12 61.3 6.7 59 18-79 30-93 (665)
31 PRK15347 two component system 98.7 5.2E-08 1.1E-12 63.2 6.5 63 17-79 714-780 (921)
32 TIGR02154 PhoB phosphate regul 98.7 1.2E-07 2.5E-12 52.2 7.0 48 30-78 42-89 (226)
33 PRK11173 two-component respons 98.7 9.5E-08 2.1E-12 53.3 6.7 58 17-78 25-87 (237)
34 TIGR01387 cztR_silR_copR heavy 98.7 1.1E-07 2.4E-12 52.1 6.8 47 29-78 37-83 (218)
35 PRK09959 hybrid sensory histid 98.7 7.9E-08 1.7E-12 64.0 7.1 75 2-79 965-1044(1197)
36 PRK10430 DNA-binding transcrip 98.7 1.1E-07 2.5E-12 53.4 6.7 44 33-79 48-91 (239)
37 PRK10161 transcriptional regul 98.7 1.4E-07 2.9E-12 52.3 7.0 48 30-78 42-89 (229)
38 TIGR03787 marine_sort_RR prote 98.7 1.4E-07 3.1E-12 52.1 7.0 58 18-78 23-87 (227)
39 PRK11083 DNA-binding response 98.7 1.5E-07 3.2E-12 51.9 6.9 47 29-78 42-88 (228)
40 TIGR01818 ntrC nitrogen regula 98.7 8.9E-08 1.9E-12 58.3 6.3 59 17-78 20-83 (463)
41 PRK10923 glnG nitrogen regulat 98.7 1E-07 2.2E-12 58.3 6.4 59 17-78 25-88 (469)
42 PRK15411 rcsA colanic acid cap 98.7 2.2E-07 4.8E-12 51.6 7.1 46 29-77 42-89 (207)
43 PRK10365 transcriptional regul 98.7 1.2E-07 2.6E-12 57.4 6.5 58 18-78 28-90 (441)
44 PRK11361 acetoacetate metaboli 98.7 1.3E-07 2.9E-12 57.4 6.6 58 18-78 27-89 (457)
45 PRK10766 DNA-binding transcrip 98.6 2.2E-07 4.9E-12 51.2 6.6 57 18-78 25-86 (221)
46 PRK10840 transcriptional regul 98.6 2.5E-07 5.5E-12 51.2 6.9 54 23-79 35-94 (216)
47 PRK09483 response regulator; P 98.6 3.2E-07 6.9E-12 50.4 7.2 47 29-78 42-88 (217)
48 PRK10693 response regulator of 98.6 1.3E-07 2.9E-12 55.1 5.9 47 30-79 13-59 (303)
49 PRK10100 DNA-binding transcrip 98.6 3.8E-07 8.3E-12 51.0 7.4 50 24-76 41-92 (216)
50 PRK09958 DNA-binding transcrip 98.6 4.6E-07 9.9E-12 49.3 7.5 59 17-78 22-86 (204)
51 PRK09581 pleD response regulat 98.6 3.1E-07 6.7E-12 55.3 7.3 49 30-79 194-242 (457)
52 PRK13856 two-component respons 98.6 3.3E-07 7.2E-12 51.4 7.0 54 18-75 24-82 (241)
53 PRK10701 DNA-binding transcrip 98.6 3.4E-07 7.3E-12 51.2 6.9 57 17-77 23-84 (240)
54 PRK10955 DNA-binding transcrip 98.6 3.9E-07 8.5E-12 50.4 6.6 42 33-78 43-84 (232)
55 PRK11091 aerobic respiration c 98.6 3.6E-07 7.9E-12 58.7 7.2 59 17-76 549-611 (779)
56 PRK11517 transcriptional regul 98.6 5.9E-07 1.3E-11 49.4 7.1 45 30-78 40-84 (223)
57 TIGR02875 spore_0_A sporulatio 98.6 1E-06 2.2E-11 50.1 8.2 49 29-78 43-91 (262)
58 TIGR02915 PEP_resp_reg putativ 98.6 7.8E-07 1.7E-11 54.1 8.1 59 18-79 19-87 (445)
59 PRK09390 fixJ response regulat 98.6 5.6E-07 1.2E-11 48.5 6.5 46 30-78 43-88 (202)
60 CHL00148 orf27 Ycf27; Reviewed 98.5 5.9E-07 1.3E-11 50.0 6.6 45 30-78 46-90 (240)
61 PRK14084 two-component respons 98.5 1.4E-06 2.9E-11 49.1 8.0 51 23-76 32-85 (246)
62 PRK09935 transcriptional regul 98.5 1.1E-06 2.3E-11 47.9 7.2 47 29-78 44-90 (210)
63 PRK09581 pleD response regulat 98.4 1.8E-06 4E-11 52.0 7.1 49 29-78 41-89 (457)
64 PRK15479 transcriptional regul 98.4 2.1E-06 4.5E-11 47.1 6.7 46 30-78 40-85 (221)
65 PRK12555 chemotaxis-specific m 98.4 1.9E-06 4.1E-11 50.9 6.6 56 17-76 23-84 (337)
66 PRK11697 putative two-componen 98.3 7.5E-06 1.6E-10 45.8 7.6 43 30-76 43-85 (238)
67 PRK10710 DNA-binding transcrip 98.3 5.1E-06 1.1E-10 46.2 6.8 44 30-77 50-93 (240)
68 PRK00742 chemotaxis-specific m 98.3 4.7E-06 1E-10 49.5 6.9 41 30-74 45-85 (354)
69 PRK09191 two-component respons 98.3 7.9E-06 1.7E-10 46.3 7.0 45 29-77 177-222 (261)
70 COG3707 AmiR Response regulato 98.2 8E-06 1.7E-10 44.8 5.8 61 17-81 27-93 (194)
71 PRK15369 two component system 98.2 3.7E-05 8.1E-10 41.5 8.5 46 30-78 45-90 (211)
72 PRK10360 DNA-binding transcrip 98.2 2E-05 4.4E-10 42.6 7.1 43 30-78 43-85 (196)
73 PRK10651 transcriptional regul 98.2 2.9E-05 6.4E-10 42.3 7.6 46 30-78 48-93 (216)
74 PRK10403 transcriptional regul 98.1 4.1E-05 8.9E-10 41.6 7.6 45 30-77 48-92 (215)
75 cd00156 REC Signal receiver do 98.0 8.8E-05 1.9E-09 35.2 7.0 45 29-76 36-80 (113)
76 PRK10610 chemotaxis regulatory 98.0 7.1E-05 1.5E-09 37.0 6.4 47 30-77 46-92 (129)
77 PRK13435 response regulator; P 98.0 7.4E-05 1.6E-09 38.8 6.4 43 30-76 46-89 (145)
78 COG3279 LytT Response regulato 97.9 4.1E-05 8.8E-10 43.7 4.9 47 28-77 41-87 (244)
79 PRK13837 two-component VirA-li 97.9 8.1E-05 1.8E-09 48.7 6.5 70 4-78 706-782 (828)
80 PRK13557 histidine kinase; Pro 97.7 0.00053 1.1E-08 42.4 8.0 41 34-77 460-501 (540)
81 COG3706 PleD Response regulato 97.0 0.0023 5E-08 39.5 4.7 42 28-74 26-67 (435)
82 PRK11107 hybrid sensory histid 94.6 0.19 4E-06 33.6 5.8 58 17-75 558-616 (919)
83 PF14606 Lipase_GDSL_3: GDSL-l 92.3 0.45 9.7E-06 26.3 4.0 44 28-74 53-102 (178)
84 cd01844 SGNH_hydrolase_like_6 91.9 0.83 1.8E-05 24.6 4.8 42 30-74 53-102 (177)
85 cd02067 B12-binding B12 bindin 90.6 1.3 2.9E-05 22.3 5.8 54 14-70 22-86 (119)
86 PF03709 OKR_DC_1_N: Orn/Lys/A 90.5 0.88 1.9E-05 23.1 3.9 38 34-75 38-77 (115)
87 PF08415 NRPS: Nonribosomal pe 90.3 0.94 2E-05 20.1 3.8 31 46-76 3-34 (58)
88 smart00448 REC cheY-homologous 88.6 0.91 2E-05 17.6 3.7 16 30-45 40-55 (55)
89 PF02310 B12-binding: B12 bind 88.3 2.1 4.5E-05 21.4 4.8 43 28-73 45-89 (121)
90 PF06490 FleQ: Flagellar regul 86.8 2.8 6E-05 21.1 6.2 61 13-77 19-81 (109)
91 COG0647 NagD Predicted sugar p 86.5 2.2 4.8E-05 25.2 4.1 38 34-76 7-51 (269)
92 PRK14089 ipid-A-disaccharide s 86.5 3 6.5E-05 25.5 4.8 37 33-74 75-111 (347)
93 PRK01021 lpxB lipid-A-disaccha 86.4 3.7 7.9E-05 27.2 5.3 42 28-74 304-345 (608)
94 cd02071 MM_CoA_mut_B12_BD meth 85.6 3.4 7.4E-05 21.1 6.0 44 14-57 22-75 (122)
95 TIGR02370 pyl_corrinoid methyl 85.2 4.8 0.0001 22.5 6.3 60 14-74 107-176 (197)
96 PF13528 Glyco_trans_1_3: Glyc 85.1 2 4.4E-05 25.2 3.6 38 28-76 88-125 (318)
97 PLN02775 Probable dihydrodipic 84.6 4.5 9.8E-05 24.2 4.8 47 26-78 68-117 (286)
98 PRK06843 inosine 5-monophospha 84.2 4.4 9.5E-05 25.5 4.8 39 29-70 160-199 (404)
99 cd02069 methionine_synthase_B1 84.1 5.8 0.00013 22.5 6.2 60 14-76 111-180 (213)
100 cd02068 radical_SAM_B12_BD B12 83.8 2.7 5.9E-05 21.5 3.4 41 29-72 33-75 (127)
101 cd02070 corrinoid_protein_B12- 83.7 5.8 0.00013 22.2 6.2 60 14-74 105-174 (201)
102 cd05014 SIS_Kpsf KpsF-like pro 81.0 5.5 0.00012 20.1 4.0 39 35-78 48-87 (128)
103 COG4594 FecB ABC-type Fe3+-cit 80.8 3.1 6.7E-05 24.7 3.1 27 18-44 91-121 (310)
104 PRK05458 guanosine 5'-monophos 80.2 4.3 9.3E-05 24.7 3.7 35 34-71 111-146 (326)
105 PRK10558 alpha-dehydro-beta-de 80.1 9.7 0.00021 22.3 5.0 46 28-74 34-79 (256)
106 PRK02261 methylaspartate mutas 79.2 7.5 0.00016 20.5 6.0 45 13-57 25-79 (137)
107 PF01380 SIS: SIS domain SIS d 79.2 5.3 0.00011 20.1 3.5 43 31-78 49-93 (131)
108 COG0763 LpxB Lipid A disacchar 78.7 11 0.00025 23.6 5.1 39 32-75 83-121 (381)
109 cd01148 TroA_a Metal binding p 78.6 2.5 5.5E-05 24.5 2.4 40 28-72 73-113 (284)
110 cd01141 TroA_d Periplasmic bin 78.5 8.1 0.00018 20.9 4.3 38 28-73 63-100 (186)
111 PF02684 LpxB: Lipid-A-disacch 78.3 11 0.00023 23.5 5.0 41 29-74 77-117 (373)
112 cd01143 YvrC Periplasmic bindi 78.3 6.1 0.00013 21.4 3.7 38 28-74 54-91 (195)
113 PRK10618 phosphotransfer inter 77.0 1.2 2.5E-05 30.6 0.8 41 3-44 697-737 (894)
114 cd02065 B12-binding_like B12 b 75.5 6.5 0.00014 19.7 3.2 41 28-71 44-86 (125)
115 cd01833 XynB_like SGNH_hydrola 75.3 7.9 0.00017 20.2 3.6 41 30-73 36-87 (157)
116 cd01139 TroA_f Periplasmic bin 74.2 13 0.00028 22.3 4.6 41 28-73 85-126 (342)
117 cd01149 HutB Hemin binding pro 73.7 6.6 0.00014 22.1 3.2 38 28-73 52-89 (235)
118 PF01497 Peripla_BP_2: Peripla 72.9 9.9 0.00021 21.2 3.8 40 28-75 54-93 (238)
119 TIGR03239 GarL 2-dehydro-3-deo 72.2 17 0.00037 21.2 5.1 46 28-74 27-72 (249)
120 cd00561 CobA_CobO_BtuR ATP:cor 72.0 14 0.0003 20.1 5.8 46 29-78 90-140 (159)
121 TIGR03127 RuMP_HxlB 6-phospho 72.0 14 0.0003 20.1 4.1 26 48-78 87-112 (179)
122 cd01838 Isoamyl_acetate_hydrol 71.9 14 0.00029 19.9 4.4 39 34-75 63-117 (199)
123 cd01147 HemV-2 Metal binding p 71.5 17 0.00036 20.8 4.5 40 28-74 68-107 (262)
124 cd01832 SGNH_hydrolase_like_1 71.3 14 0.0003 19.8 4.2 37 33-74 66-114 (185)
125 PRK05096 guanosine 5'-monophos 70.7 11 0.00024 23.3 3.7 35 33-70 121-156 (346)
126 cd01827 sialate_O-acetylestera 70.7 13 0.00027 20.1 3.8 40 32-74 65-117 (188)
127 COG3836 HpcH 2,4-dihydroxyhept 70.7 19 0.00042 21.2 4.9 45 28-73 32-76 (255)
128 TIGR01452 PGP_euk phosphoglyco 70.1 20 0.00043 21.1 4.7 36 35-75 2-44 (279)
129 cd05013 SIS_RpiR RpiR-like pro 69.9 13 0.00027 18.8 3.7 36 37-77 64-99 (139)
130 cd01825 SGNH_hydrolase_peri1 S 69.3 13 0.00028 19.9 3.6 42 30-74 52-105 (189)
131 COG0420 SbcD DNA repair exonuc 68.7 19 0.00041 22.2 4.5 49 28-78 34-88 (390)
132 PRK09534 btuF corrinoid ABC tr 68.6 16 0.00035 22.4 4.2 37 28-73 113-149 (359)
133 PF06858 NOG1: Nucleolar GTP-b 67.8 10 0.00023 17.1 2.5 21 52-75 37-57 (58)
134 cd04506 SGNH_hydrolase_YpmR_li 66.9 13 0.00029 20.3 3.4 14 34-47 68-81 (204)
135 COG2109 BtuR ATP:corrinoid ade 66.9 21 0.00047 20.3 5.3 46 28-77 116-166 (198)
136 TIGR02130 dapB_plant dihydrodi 66.7 16 0.00036 21.8 3.8 42 32-79 66-107 (275)
137 PRK14048 ferrichrome/ferrioxam 66.2 21 0.00045 21.9 4.3 40 28-72 115-155 (374)
138 PRK11340 phosphodiesterase Yae 65.9 24 0.00053 20.7 4.4 45 30-77 76-124 (271)
139 cd01831 Endoglucanase_E_like E 65.9 19 0.0004 19.2 4.2 37 35-74 56-105 (169)
140 TIGR01305 GMP_reduct_1 guanosi 65.5 17 0.00036 22.6 3.7 35 34-71 121-156 (343)
141 cd05006 SIS_GmhA Phosphoheptos 65.3 20 0.00044 19.4 4.0 38 35-77 102-140 (177)
142 TIGR02026 BchE magnesium-proto 65.2 15 0.00032 23.7 3.6 40 30-72 59-99 (497)
143 PF00478 IMPDH: IMP dehydrogen 64.7 16 0.00034 22.7 3.6 40 29-71 115-155 (352)
144 PF01113 DapB_N: Dihydrodipico 64.6 6.2 0.00013 20.2 1.7 37 35-78 68-104 (124)
145 TIGR01501 MthylAspMutase methy 64.3 20 0.00043 19.0 6.4 44 14-57 24-77 (134)
146 TIGR00708 cobA cob(I)alamin ad 63.5 24 0.00051 19.6 5.2 46 29-78 92-142 (173)
147 cd03114 ArgK-like The function 63.0 21 0.00046 18.9 4.4 37 30-74 87-123 (148)
148 PRK10128 2-keto-3-deoxy-L-rham 62.8 30 0.00065 20.6 6.3 45 28-73 33-77 (267)
149 PRK05986 cob(I)alamin adenolsy 62.7 26 0.00056 19.8 5.4 48 28-79 109-161 (191)
150 TIGR01459 HAD-SF-IIA-hyp4 HAD- 62.2 28 0.0006 19.9 4.8 38 34-76 7-51 (242)
151 cd05710 SIS_1 A subgroup of th 61.9 20 0.00043 18.2 4.1 27 47-78 61-87 (120)
152 cd01836 FeeA_FeeB_like SGNH_hy 61.8 24 0.00052 19.1 4.0 40 32-74 65-115 (191)
153 cd01820 PAF_acetylesterase_lik 61.7 18 0.00038 20.2 3.3 39 32-73 87-136 (214)
154 cd05008 SIS_GlmS_GlmD_1 SIS (S 61.1 20 0.00043 18.0 4.0 39 34-78 46-86 (126)
155 PLN02274 inosine-5'-monophosph 61.0 35 0.00077 22.3 4.8 40 28-70 254-294 (505)
156 PRK07414 cob(I)yrinic acid a,c 61.0 27 0.00059 19.5 5.4 47 29-79 110-161 (178)
157 cd01144 BtuF Cobalamin binding 60.4 19 0.00041 20.4 3.3 16 28-43 51-66 (245)
158 KOG1257 NADP+-dependent malic 60.3 32 0.00069 22.8 4.4 46 28-76 383-428 (582)
159 PLN02645 phosphoglycolate phos 60.3 35 0.00076 20.5 4.6 37 34-75 27-70 (311)
160 PF07652 Flavi_DEAD: Flaviviru 59.3 16 0.00034 19.8 2.6 40 34-74 95-135 (148)
161 cd01828 sialate_O-acetylestera 58.8 24 0.00053 18.6 3.4 41 32-75 46-97 (169)
162 TIGR00661 MJ1255 conserved hyp 58.7 20 0.00043 21.4 3.3 35 28-73 87-121 (321)
163 PF01993 MTD: methylene-5,6,7, 58.1 28 0.00061 20.7 3.6 42 30-75 55-96 (276)
164 TIGR01303 IMP_DH_rel_1 IMP deh 57.3 37 0.0008 22.0 4.4 38 30-70 233-271 (475)
165 COG0488 Uup ATPase components 56.5 28 0.00061 22.9 3.8 36 34-73 171-208 (530)
166 COG4558 ChuT ABC-type hemin tr 56.4 29 0.00063 21.1 3.6 43 29-79 94-136 (300)
167 TIGR03729 acc_ester putative p 56.3 36 0.00079 19.4 4.4 44 30-77 28-73 (239)
168 cd05005 SIS_PHI Hexulose-6-pho 56.2 32 0.00068 18.7 3.8 25 49-78 91-115 (179)
169 PRK11543 gutQ D-arabinose 5-ph 56.0 36 0.00078 20.3 4.1 38 35-78 90-129 (321)
170 PF02572 CobA_CobO_BtuR: ATP:c 56.0 34 0.00073 19.0 5.2 46 30-79 92-142 (172)
171 cd01841 NnaC_like NnaC (CMP-Ne 55.9 30 0.00065 18.3 4.1 41 31-74 48-99 (174)
172 COG0313 Predicted methyltransf 55.8 29 0.00063 20.8 3.5 37 35-76 79-117 (275)
173 COG4671 Predicted glycosyl tra 55.8 30 0.00064 21.9 3.6 44 28-75 100-145 (400)
174 PRK13938 phosphoheptose isomer 55.4 36 0.00078 19.2 3.8 26 48-78 128-153 (196)
175 COG1927 Mtd Coenzyme F420-depe 54.7 42 0.0009 19.6 6.2 44 28-75 54-97 (277)
176 PLN02605 monogalactosyldiacylg 54.6 48 0.001 20.3 5.6 42 28-71 94-135 (382)
177 TIGR01302 IMP_dehydrog inosine 54.5 44 0.00096 21.4 4.4 38 30-70 232-270 (450)
178 PLN00060 meiotic recombination 54.4 41 0.00089 21.3 4.1 38 35-75 236-273 (384)
179 PRK13937 phosphoheptose isomer 54.2 36 0.00079 18.8 4.0 26 47-77 120-145 (188)
180 TIGR00441 gmhA phosphoheptose 54.0 33 0.00072 18.3 3.7 26 48-78 94-119 (154)
181 PRK10886 DnaA initiator-associ 53.8 39 0.00085 19.1 3.9 39 34-78 109-149 (196)
182 PRK11557 putative DNA-binding 53.8 32 0.00069 20.1 3.6 39 34-78 175-215 (278)
183 PF08477 Miro: Miro-like prote 53.5 9.9 0.00022 18.7 1.3 42 34-75 73-118 (119)
184 TIGR00640 acid_CoA_mut_C methy 53.5 32 0.0007 18.0 5.9 46 12-57 23-78 (132)
185 PF03949 Malic_M: Malic enzyme 52.6 27 0.00059 20.7 3.1 49 25-76 97-145 (255)
186 COG1224 TIP49 DNA helicase TIP 52.2 24 0.00052 22.4 2.9 39 35-77 292-331 (450)
187 cd00984 DnaB_C DnaB helicase C 51.4 21 0.00045 20.2 2.5 42 32-74 121-172 (242)
188 cd01146 FhuD Fe3+-siderophore 51.0 46 0.00099 19.0 4.0 36 28-73 59-94 (256)
189 PRK10966 exonuclease subunit S 50.9 42 0.0009 21.2 3.9 43 30-77 35-86 (407)
190 cd01821 Rhamnogalacturan_acety 50.4 41 0.0009 18.3 3.6 13 34-46 65-77 (198)
191 cd01839 SGNH_arylesterase_like 50.2 43 0.00093 18.4 4.7 39 33-74 78-134 (208)
192 PRK09490 metH B12-dependent me 49.9 1E+02 0.0022 22.9 5.8 60 12-74 772-841 (1229)
193 PRK07807 inosine 5-monophospha 49.5 44 0.00095 21.7 3.8 38 30-70 235-273 (479)
194 PRK00414 gmhA phosphoheptose i 48.9 47 0.001 18.5 4.1 39 35-78 112-151 (192)
195 PF06068 TIP49: TIP49 C-termin 48.1 23 0.00051 22.4 2.4 38 35-76 279-317 (398)
196 cd07392 MPP_PAE1087 Pyrobaculu 48.0 43 0.00094 17.9 4.9 43 30-77 19-64 (188)
197 TIGR00393 kpsF KpsF/GutQ famil 47.9 54 0.0012 18.9 3.9 33 40-77 54-86 (268)
198 PRK11337 DNA-binding transcrip 47.7 58 0.0013 19.2 4.0 40 34-78 187-227 (292)
199 PRK03379 vitamin B12-transport 47.6 46 0.001 19.3 3.6 37 28-72 66-102 (260)
200 PRK05567 inosine 5'-monophosph 47.5 73 0.0016 20.7 4.6 39 29-70 235-274 (486)
201 TIGR02082 metH 5-methyltetrahy 47.4 1.1E+02 0.0025 22.5 6.0 60 13-75 754-823 (1178)
202 KOG2550 IMP dehydrogenase/GMP 47.2 59 0.0013 21.1 4.0 38 30-70 259-297 (503)
203 COG2874 FlaH Predicted ATPases 47.0 36 0.00078 19.9 2.9 44 29-75 118-167 (235)
204 PRK13936 phosphoheptose isomer 47.0 51 0.0011 18.4 4.0 37 35-77 112-150 (197)
205 cd02072 Glm_B12_BD B12 binding 46.9 44 0.00095 17.6 6.1 44 14-57 22-75 (128)
206 PF13344 Hydrolase_6: Haloacid 46.9 17 0.00038 17.9 1.6 24 48-76 18-41 (101)
207 PF13941 MutL: MutL protein 46.6 80 0.0017 20.6 4.6 41 28-71 118-161 (457)
208 cd01834 SGNH_hydrolase_like_2 46.5 46 0.00099 17.7 3.4 40 32-74 59-113 (191)
209 COG1134 TagH ABC-type polysacc 46.3 50 0.0011 19.6 3.5 18 32-49 163-180 (249)
210 PTZ00314 inosine-5'-monophosph 46.2 82 0.0018 20.6 4.7 39 29-70 248-287 (495)
211 TIGR03471 HpnJ hopanoid biosyn 45.3 53 0.0012 21.0 3.8 37 34-73 68-105 (472)
212 cd01822 Lysophospholipase_L1_l 45.1 47 0.001 17.5 4.8 17 30-46 60-76 (177)
213 COG0421 SpeE Spermidine syntha 44.9 67 0.0015 19.3 3.9 30 28-57 141-177 (282)
214 cd06533 Glyco_transf_WecG_TagA 44.8 53 0.0011 17.9 4.5 27 29-57 94-120 (171)
215 PRK15482 transcriptional regul 44.5 66 0.0014 19.0 4.0 34 40-78 189-222 (285)
216 PRK07413 hypothetical protein; 44.1 83 0.0018 20.0 5.4 46 29-78 120-170 (382)
217 PRK00994 F420-dependent methyl 43.4 72 0.0016 19.1 6.3 43 29-75 55-97 (277)
218 COG5012 Predicted cobalamin bi 42.7 56 0.0012 19.1 3.2 58 14-74 127-194 (227)
219 COG0489 Mrp ATPases involved i 42.2 73 0.0016 18.8 4.8 24 32-57 164-187 (265)
220 TIGR01426 MGT glycosyltransfer 41.8 51 0.0011 20.2 3.3 16 30-45 88-103 (392)
221 PTZ00317 NADP-dependent malic 41.5 1E+02 0.0022 20.7 4.6 48 25-75 372-419 (559)
222 PRK10892 D-arabinose 5-phospha 41.2 75 0.0016 19.1 3.9 26 48-78 109-134 (326)
223 cd01829 SGNH_hydrolase_peri2 S 40.9 61 0.0013 17.6 4.8 16 30-45 55-70 (200)
224 TIGR00619 sbcd exonuclease Sbc 40.7 75 0.0016 18.5 4.8 44 30-77 35-87 (253)
225 TIGR02311 HpaI 2,4-dihydroxyhe 40.1 78 0.0017 18.5 6.2 45 28-73 27-71 (249)
226 COG0159 TrpA Tryptophan syntha 39.8 49 0.0011 19.8 2.8 24 49-75 81-104 (265)
227 PRK02947 hypothetical protein; 39.6 76 0.0016 18.5 3.6 36 35-75 107-143 (246)
228 KOG1016 Predicted DNA helicase 39.4 59 0.0013 23.2 3.4 39 29-74 429-471 (1387)
229 cd05017 SIS_PGI_PMI_1 The memb 39.0 55 0.0012 16.4 3.8 36 34-75 43-80 (119)
230 COG1162 Predicted GTPases [Gen 38.5 95 0.0021 19.1 4.4 37 37-74 84-120 (301)
231 cd00762 NAD_bind_malic_enz NAD 38.4 88 0.0019 18.7 4.4 49 25-76 97-145 (254)
232 COG4152 ABC-type uncharacteriz 38.4 84 0.0018 19.1 3.6 41 33-76 147-190 (300)
233 COG1136 SalX ABC-type antimicr 38.4 71 0.0015 18.6 3.3 39 34-73 160-201 (226)
234 PF03808 Glyco_tran_WecB: Glyc 38.2 70 0.0015 17.4 4.7 27 29-57 96-122 (172)
235 PF10237 N6-adenineMlase: Prob 37.9 47 0.001 18.2 2.4 44 32-80 84-131 (162)
236 cd06346 PBP1_ABC_ligand_bindin 37.6 88 0.0019 18.4 4.9 40 29-73 187-226 (312)
237 PRK10116 universal stress prot 37.6 60 0.0013 16.5 4.4 46 28-75 96-141 (142)
238 PRK00536 speE spermidine synth 37.5 73 0.0016 19.0 3.3 20 33-53 138-157 (262)
239 PRK13529 malate dehydrogenase; 37.4 1.3E+02 0.0028 20.3 4.6 47 27-76 375-421 (563)
240 COG0218 Predicted GTPase [Gene 37.4 83 0.0018 18.1 4.5 23 35-57 109-132 (200)
241 PF08459 UvrC_HhH_N: UvrC Heli 37.4 51 0.0011 18.0 2.5 36 34-74 79-114 (155)
242 TIGR03590 PseG pseudaminic aci 37.2 90 0.002 18.4 4.4 39 28-74 74-112 (279)
243 PRK11302 DNA-binding transcrip 36.9 89 0.0019 18.3 3.7 22 48-74 190-211 (284)
244 COG4607 CeuA ABC-type enteroch 36.9 57 0.0012 20.1 2.8 36 28-74 112-147 (320)
245 COG1737 RpiR Transcriptional r 36.9 84 0.0018 18.7 3.5 44 30-78 172-217 (281)
246 TIGR03868 F420-O_ABCperi propo 36.8 39 0.00084 19.7 2.2 39 28-71 72-111 (287)
247 PRK10443 rihA ribonucleoside h 36.7 64 0.0014 19.5 3.1 20 38-57 5-24 (311)
248 PF10996 Beta-Casp: Beta-Casp 36.6 61 0.0013 16.3 3.1 56 19-79 62-121 (126)
249 PRK00811 spermidine synthase; 36.3 96 0.0021 18.5 4.5 25 33-57 149-178 (283)
250 cd00381 IMPDH IMPDH: The catal 36.2 1E+02 0.0023 18.9 4.5 39 29-70 101-140 (325)
251 cd05312 NAD_bind_1_malic_enz N 36.2 1E+02 0.0022 18.7 4.6 47 26-75 97-143 (279)
252 TIGR00736 nifR3_rel_arch TIM-b 35.9 93 0.002 18.2 4.5 47 28-77 155-203 (231)
253 COG4359 Uncharacterized conser 35.6 62 0.0014 18.6 2.7 23 50-77 79-101 (220)
254 TIGR00096 probable S-adenosylm 35.6 51 0.0011 19.8 2.5 34 35-73 74-109 (276)
255 cd02654 nuc_hydro_CjNH nuc_hyd 35.5 1.1E+02 0.0023 18.7 3.9 8 38-45 2-9 (318)
256 KOG2680 DNA helicase TIP49, TB 35.5 68 0.0015 20.1 3.0 38 35-76 289-327 (454)
257 COG0614 FepB ABC-type Fe3+-hyd 35.5 95 0.0021 18.2 4.1 38 28-74 109-146 (319)
258 PF00290 Trp_syntA: Tryptophan 35.3 45 0.00098 19.8 2.2 23 50-75 75-97 (259)
259 cd01125 repA Hexameric Replica 34.9 57 0.0012 18.6 2.6 10 33-42 110-119 (239)
260 cd01988 Na_H_Antiporter_C The 34.7 42 0.00091 16.6 1.9 19 29-47 89-107 (132)
261 KOG1618 Predicted phosphatase 34.4 1.2E+02 0.0026 19.1 4.5 40 38-78 45-84 (389)
262 COG0777 AccD Acetyl-CoA carbox 34.4 1.1E+02 0.0024 18.7 3.9 46 30-77 119-169 (294)
263 COG2342 Predicted extracellula 34.1 90 0.002 19.1 3.3 30 28-57 37-67 (300)
264 TIGR01319 glmL_fam conserved h 34.1 1.4E+02 0.003 19.6 4.7 41 28-71 114-157 (463)
265 cd07385 MPP_YkuE_C Bacillus su 33.9 88 0.0019 17.4 5.2 45 30-77 28-75 (223)
266 KOG1562 Spermidine synthase [A 33.6 77 0.0017 19.7 3.0 22 32-53 193-214 (337)
267 cd03245 ABCC_bacteriocin_expor 33.6 91 0.002 17.4 3.8 24 34-57 158-184 (220)
268 cd00229 SGNH_hydrolase SGNH_hy 33.4 72 0.0016 16.2 4.2 41 32-75 63-116 (187)
269 PRK13111 trpA tryptophan synth 33.3 82 0.0018 18.7 3.1 23 50-75 77-99 (258)
270 PF05148 Methyltransf_8: Hypot 33.2 75 0.0016 18.5 2.8 25 33-57 121-145 (219)
271 cd08166 MPP_Cdc1_like_1 unchar 33.1 98 0.0021 17.6 5.7 51 28-78 36-93 (195)
272 PRK09982 universal stress prot 33.1 76 0.0016 16.4 3.6 40 29-72 98-138 (142)
273 cd03784 GT1_Gtf_like This fami 32.9 52 0.0011 20.1 2.4 15 30-44 100-114 (401)
274 PF06925 MGDG_synth: Monogalac 32.9 85 0.0018 16.9 4.4 43 28-74 83-126 (169)
275 PRK09955 rihB ribonucleoside h 32.8 92 0.002 19.0 3.3 20 38-57 6-25 (313)
276 PRK03522 rumB 23S rRNA methylu 32.8 1.1E+02 0.0024 18.5 3.7 21 34-57 240-262 (315)
277 KOG3035 Isoamyl acetate-hydrol 32.4 1.1E+02 0.0024 18.1 4.0 44 34-77 68-127 (245)
278 PF02887 PK_C: Pyruvate kinase 32.3 70 0.0015 16.1 2.5 14 62-75 36-49 (117)
279 PF04009 DUF356: Protein of un 32.3 78 0.0017 16.2 3.0 35 37-77 58-92 (107)
280 PHA02542 41 41 helicase; Provi 32.3 78 0.0017 20.6 3.1 42 35-77 302-356 (473)
281 KOG0062 ATPase component of AB 32.1 1.2E+02 0.0026 20.4 3.8 36 34-73 216-253 (582)
282 KOG3045 Predicted RNA methylas 31.9 60 0.0013 19.8 2.3 25 33-57 227-251 (325)
283 PF08495 FIST: FIST N domain; 31.7 92 0.002 16.9 3.9 39 34-75 1-39 (198)
284 PRK08760 replicative DNA helic 31.5 1.2E+02 0.0027 19.7 3.8 43 33-76 338-390 (476)
285 PRK10768 ribonucleoside hydrol 31.4 77 0.0017 19.1 2.8 20 38-57 5-24 (304)
286 PHA03392 egt ecdysteroid UDP-g 31.3 1.1E+02 0.0023 20.1 3.6 38 28-74 128-167 (507)
287 cd01124 KaiC KaiC is a circadi 31.2 91 0.002 16.7 3.9 16 31-46 92-107 (187)
288 KOG0922 DEAH-box RNA helicase 31.1 87 0.0019 21.5 3.1 42 34-78 163-208 (674)
289 PRK10957 iron-enterobactin tra 31.1 1.2E+02 0.0026 18.1 4.7 39 28-73 107-145 (317)
290 TIGR02742 TrbC_Ftype type-F co 31.1 76 0.0016 16.8 2.5 21 37-57 2-22 (130)
291 KOG0925 mRNA splicing factor A 30.9 85 0.0018 21.1 3.0 43 34-79 159-205 (699)
292 PLN02210 UDP-glucosyl transfer 30.6 1.4E+02 0.0031 19.3 4.0 27 29-57 98-124 (456)
293 cd01857 HSR1_MMR1 HSR1/MMR1. 30.5 86 0.0019 16.2 4.0 10 37-46 16-25 (141)
294 PLN03129 NADP-dependent malic 30.3 1.8E+02 0.0039 19.8 4.5 47 26-75 393-439 (581)
295 PRK01581 speE spermidine synth 30.1 1.5E+02 0.0033 18.9 4.1 25 33-57 225-255 (374)
296 cd02653 nuc_hydro_3 NH_3: A su 30.1 1.1E+02 0.0024 18.7 3.3 15 39-53 3-17 (320)
297 PF00975 Thioesterase: Thioest 30.1 38 0.00082 18.8 1.4 42 29-73 58-101 (229)
298 PLN02717 uridine nucleosidase 30.0 1.2E+02 0.0027 18.4 3.5 6 39-44 4-9 (316)
299 PF13607 Succ_CoA_lig: Succiny 29.9 65 0.0014 17.1 2.1 37 35-75 55-91 (138)
300 TIGR03282 methan_mark_13 putat 29.9 1.3E+02 0.0029 18.9 3.6 43 29-74 70-113 (352)
301 COG2380 Uncharacterized protei 29.9 85 0.0019 19.1 2.7 25 49-77 202-226 (327)
302 cd06349 PBP1_ABC_ligand_bindin 29.7 1.3E+02 0.0028 17.9 4.6 39 30-73 186-224 (340)
303 COG3598 RepA RecA-family ATPas 29.7 87 0.0019 19.8 2.8 44 29-73 189-240 (402)
304 PRK13608 diacylglycerol glucos 29.6 1.4E+02 0.003 18.5 3.8 14 28-41 98-111 (391)
305 TIGR01763 MalateDH_bact malate 29.3 68 0.0015 19.4 2.4 41 33-76 68-122 (305)
306 KOG1135 mRNA cleavage and poly 29.3 66 0.0014 22.2 2.4 36 37-75 26-61 (764)
307 cd02649 nuc_hydro_CeIAG nuc_hy 29.3 1E+02 0.0022 18.7 3.1 17 38-54 3-19 (306)
308 cd07020 Clp_protease_NfeD_1 No 29.2 1.1E+02 0.0023 16.9 5.2 35 34-73 29-66 (187)
309 PLN02366 spermidine synthase 29.2 1.4E+02 0.0031 18.2 4.2 25 33-57 164-193 (308)
310 PRK10037 cell division protein 29.0 1.2E+02 0.0026 17.4 3.8 10 33-42 116-125 (250)
311 COG1844 Uncharacterized protei 28.9 96 0.0021 16.2 2.8 34 37-76 59-92 (125)
312 PRK11175 universal stress prot 28.7 97 0.0021 18.2 2.9 17 30-46 103-119 (305)
313 COG0289 DapB Dihydrodipicolina 28.6 1.4E+02 0.003 18.0 3.6 35 38-78 72-106 (266)
314 cd00636 TroA-like Helical back 28.4 85 0.0018 15.5 3.8 38 28-74 55-92 (148)
315 TIGR03659 IsdE heme ABC transp 28.2 1.3E+02 0.0029 17.7 4.4 36 28-72 85-120 (289)
316 PRK15400 lysine decarboxylase 28.1 2.1E+02 0.0046 20.0 6.9 55 14-74 25-85 (714)
317 cd01122 GP4d_helicase GP4d_hel 27.9 41 0.00088 19.5 1.3 43 32-75 138-191 (271)
318 cd01138 FeuA Periplasmic bindi 27.9 88 0.0019 17.7 2.6 25 28-57 60-84 (248)
319 PLN02489 homocysteine S-methyl 27.7 1.6E+02 0.0034 18.3 3.8 36 32-70 178-213 (335)
320 TIGR01579 MiaB-like-C MiaB-lik 27.6 1.7E+02 0.0036 18.5 3.9 34 34-70 33-70 (414)
321 PF08503 DapH_N: Tetrahydrodip 27.5 87 0.0019 15.3 2.2 26 47-75 1-26 (83)
322 PLN03007 UDP-glucosyltransfera 27.4 1.8E+02 0.0038 18.9 4.0 26 30-57 118-143 (482)
323 cd05291 HicDH_like L-2-hydroxy 27.3 1.4E+02 0.0031 17.9 3.5 41 33-76 67-121 (306)
324 COG1856 Uncharacterized homolo 27.2 51 0.0011 19.5 1.5 44 28-72 173-226 (275)
325 KOG0781 Signal recognition par 27.2 1.5E+02 0.0034 19.8 3.7 11 32-42 464-474 (587)
326 cd06358 PBP1_NHase Type I peri 27.0 1.5E+02 0.0032 17.7 4.9 39 29-72 182-220 (333)
327 PF03017 Transposase_23: TNP1/ 26.6 73 0.0016 15.0 1.8 15 33-47 3-17 (73)
328 PF11599 AviRa: RRNA methyltra 26.4 1.4E+02 0.003 17.7 3.1 39 34-75 168-216 (246)
329 cd07035 TPP_PYR_POX_like Pyrim 26.4 1.1E+02 0.0024 16.0 3.5 39 33-76 58-96 (155)
330 PRK15399 lysine decarboxylase 26.4 2.3E+02 0.005 19.8 7.0 55 14-74 25-85 (713)
331 PLN02629 powdery mildew resist 26.2 80 0.0017 20.1 2.3 17 41-57 103-119 (387)
332 PLN03050 pyridoxine (pyridoxam 26.1 1.5E+02 0.0032 17.5 3.5 31 37-70 64-94 (246)
333 cd01529 4RHOD_Repeats Member o 26.0 75 0.0016 15.0 1.9 12 63-74 54-65 (96)
334 TIGR01306 GMP_reduct_2 guanosi 25.8 1.6E+02 0.0034 18.3 3.5 23 35-57 109-132 (321)
335 PRK05973 replicative DNA helic 25.6 1.5E+02 0.0033 17.4 4.4 44 33-77 146-195 (237)
336 PRK11778 putative inner membra 25.6 1.8E+02 0.0038 18.2 4.5 35 34-73 122-162 (330)
337 PF13407 Peripla_BP_4: Peripla 25.5 1.4E+02 0.003 16.8 4.7 37 32-74 53-89 (257)
338 cd02032 Bchl_like This family 25.4 1E+02 0.0022 17.9 2.6 9 34-42 115-123 (267)
339 COG0514 RecQ Superfamily II DN 25.3 1.2E+02 0.0025 20.6 3.0 48 28-78 125-179 (590)
340 PRK11382 frlB fructoselysine-6 25.3 1.7E+02 0.0037 17.9 3.8 39 35-78 92-132 (340)
341 cd00550 ArsA_ATPase Oxyanion-t 25.2 66 0.0014 18.7 1.8 16 30-45 120-135 (254)
342 cd03274 ABC_SMC4_euk Eukaryoti 25.1 1.4E+02 0.003 16.9 4.6 37 34-73 149-188 (212)
343 PRK15005 universal stress prot 25.1 1.1E+02 0.0023 15.5 4.2 15 30-44 103-117 (144)
344 smart00174 RHO Rho (Ras homolo 25.0 1.2E+02 0.0025 15.9 3.6 41 34-77 69-114 (174)
345 cd04863 MtLigD_Pol_like MtLigD 24.7 1.4E+02 0.0031 17.6 3.0 19 33-51 100-118 (231)
346 PF01564 Spermine_synth: Sperm 24.7 56 0.0012 19.0 1.5 40 18-57 130-178 (246)
347 cd04795 SIS SIS domain. SIS (S 24.5 87 0.0019 14.2 3.8 20 48-72 62-81 (87)
348 PRK15118 universal stress glob 24.4 1.1E+02 0.0025 15.5 4.5 43 29-74 98-140 (144)
349 TIGR01279 DPOR_bchN light-inde 24.3 1.2E+02 0.0027 19.1 2.9 45 30-75 80-125 (407)
350 cd01427 HAD_like Haloacid deha 24.3 1E+02 0.0022 14.9 3.8 23 48-75 28-50 (139)
351 cd06333 PBP1_ABC-type_HAAT_lik 24.1 1.6E+02 0.0035 17.2 4.9 38 33-75 187-224 (312)
352 COG1030 NfeD Membrane-bound se 24.0 2.2E+02 0.0047 18.7 4.8 44 30-75 52-95 (436)
353 KOG1432 Predicted DNA repair e 23.9 2E+02 0.0044 18.3 4.0 49 28-77 94-146 (379)
354 PRK14837 undecaprenyl pyrophos 23.8 1.3E+02 0.0028 17.7 2.8 23 35-57 197-219 (230)
355 cd02647 nuc_hydro_TvIAG nuc_hy 23.8 1.8E+02 0.004 17.7 4.0 19 39-57 4-22 (312)
356 PF00582 Usp: Universal stress 23.7 1E+02 0.0023 14.9 4.1 40 28-71 96-139 (140)
357 COG0615 TagD Cytidylyltransfer 23.7 1.4E+02 0.0029 16.2 4.2 29 28-57 80-108 (140)
358 cd06359 PBP1_Nba_like Type I p 23.7 1.7E+02 0.0037 17.4 4.4 27 29-57 181-207 (333)
359 PF05822 UMPH-1: Pyrimidine 5' 23.7 1.2E+02 0.0027 18.0 2.6 25 47-76 92-117 (246)
360 COG0794 GutQ Predicted sugar p 23.7 1.6E+02 0.0035 17.0 3.7 18 63-80 111-128 (202)
361 COG0194 Gmk Guanylate kinase [ 23.6 68 0.0015 18.3 1.6 32 38-78 96-127 (191)
362 PF13680 DUF4152: Protein of u 23.6 87 0.0019 17.7 1.9 18 30-47 69-86 (227)
363 KOG1942 DNA helicase, TBP-inte 23.5 1.6E+02 0.0035 18.5 3.2 39 34-76 296-335 (456)
364 cd01967 Nitrogenase_MoFe_alpha 23.5 1.2E+02 0.0026 18.9 2.8 42 29-74 82-127 (406)
365 PRK00208 thiG thiazole synthas 23.4 1.8E+02 0.0039 17.4 5.1 58 14-80 118-190 (250)
366 cd01979 Pchlide_reductase_N Pc 23.4 1.1E+02 0.0023 19.2 2.5 43 29-75 82-128 (396)
367 cd03785 GT1_MurG MurG is an N- 23.3 1.7E+02 0.0038 17.4 3.4 16 30-45 85-100 (350)
368 cd04728 ThiG Thiazole synthase 23.3 1.8E+02 0.0039 17.4 5.3 58 14-80 118-190 (248)
369 COG4148 ModC ABC-type molybdat 23.3 2E+02 0.0043 18.0 3.7 36 34-73 146-187 (352)
370 PHA02546 47 endonuclease subun 23.0 1.9E+02 0.0042 17.7 3.9 46 30-77 35-88 (340)
371 COG0020 UppS Undecaprenyl pyro 23.0 1.5E+02 0.0032 17.6 2.9 23 35-57 211-233 (245)
372 PF00448 SRP54: SRP54-type pro 23.0 1.5E+02 0.0034 16.6 4.7 45 33-77 82-127 (196)
373 TIGR00665 DnaB replicative DNA 22.9 2.1E+02 0.0046 18.1 3.9 43 32-75 303-355 (434)
374 PRK14249 phosphate ABC transpo 22.9 1.6E+02 0.0035 16.9 4.3 24 34-57 165-191 (251)
375 cd03031 GRX_GRX_like Glutaredo 22.8 1.4E+02 0.0031 16.1 3.8 46 28-74 24-69 (147)
376 cd06341 PBP1_ABC_ligand_bindin 22.7 1.8E+02 0.0039 17.3 4.6 38 32-74 186-223 (341)
377 PRK09165 replicative DNA helic 22.5 2.1E+02 0.0046 18.8 3.7 43 33-76 340-394 (497)
378 cd04468 S1_eIF5A S1_eIF5A: Euk 22.3 1E+02 0.0023 14.4 2.7 33 41-76 28-60 (69)
379 cd08163 MPP_Cdc1 Saccharomyces 22.2 1.8E+02 0.004 17.1 4.7 13 65-77 84-96 (257)
380 cd07383 MPP_Dcr2 Saccharomyces 22.2 1.5E+02 0.0033 16.3 4.2 47 29-76 36-87 (199)
381 TIGR02778 ligD_pol DNA polymer 22.1 1.7E+02 0.0037 17.5 3.0 19 33-51 112-130 (245)
382 PF03328 HpcH_HpaI: HpcH/HpaI 22.1 1.7E+02 0.0036 16.6 3.8 28 30-57 17-53 (221)
383 COG0062 Uncharacterized conser 22.1 1.7E+02 0.0037 16.8 3.6 35 37-74 53-87 (203)
384 cd01849 YlqF_related_GTPase Yl 22.0 1.4E+02 0.003 15.7 3.7 12 65-76 59-70 (155)
385 PLN02591 tryptophan synthase 22.0 1.9E+02 0.004 17.2 3.2 23 49-75 66-88 (250)
386 PF13433 Peripla_BP_5: Peripla 21.9 2.2E+02 0.0048 18.1 4.2 44 28-73 183-226 (363)
387 PRK03612 spermidine synthase; 21.8 2.5E+02 0.0054 18.6 4.5 25 33-57 372-402 (521)
388 TIGR01283 nifE nitrogenase mol 21.7 1.1E+02 0.0024 19.6 2.4 44 28-75 115-162 (456)
389 PRK13609 diacylglycerol glucos 21.6 1.7E+02 0.0036 17.9 3.1 14 28-41 98-111 (380)
390 cd04862 PaeLigD_Pol_like PaeLi 21.5 1.8E+02 0.0039 17.1 3.0 19 33-51 96-114 (227)
391 PRK13730 conjugal transfer pil 21.4 1.2E+02 0.0026 17.6 2.3 21 37-57 93-113 (212)
392 TIGR01389 recQ ATP-dependent D 21.4 2.6E+02 0.0057 18.6 4.9 42 33-77 126-174 (591)
393 TIGR02314 ABC_MetN D-methionin 21.4 2.2E+02 0.0047 17.7 4.1 39 34-73 158-199 (343)
394 PRK15177 Vi polysaccharide exp 21.3 1.3E+02 0.0028 16.9 2.5 13 34-46 122-134 (213)
395 PRK09452 potA putrescine/sperm 21.2 2.3E+02 0.0049 17.9 4.2 40 34-74 162-204 (375)
396 PRK10444 UMP phosphatase; Prov 21.2 1.9E+02 0.0041 16.9 3.7 24 48-76 21-44 (248)
397 TIGR02168 SMC_prok_B chromosom 21.1 1.9E+02 0.0041 20.7 3.5 39 33-74 1110-1151(1179)
398 PF13578 Methyltransf_24: Meth 21.0 44 0.00096 16.2 0.5 26 32-57 67-92 (106)
399 KOG3022 Predicted ATPase, nucl 21.0 1.1E+02 0.0025 18.7 2.2 24 32-57 154-177 (300)
400 PRK14251 phosphate ABC transpo 21.0 1.8E+02 0.0039 16.6 3.9 24 34-57 165-191 (251)
401 cd06338 PBP1_ABC_ligand_bindin 20.9 2E+02 0.0043 17.1 4.8 39 30-73 192-230 (345)
402 CHL00200 trpA tryptophan synth 20.9 1.8E+02 0.004 17.3 3.0 23 49-75 79-101 (263)
403 PRK10419 nikE nickel transport 20.8 1.9E+02 0.0042 16.9 3.9 17 34-50 169-185 (268)
404 PRK04161 tagatose 1,6-diphosph 20.7 1.3E+02 0.0029 18.8 2.5 29 51-80 229-257 (329)
405 COG1131 CcmA ABC-type multidru 20.7 2.1E+02 0.0045 17.2 3.9 43 33-77 153-198 (293)
406 cd04134 Rho3 Rho3 subfamily. 20.7 1.6E+02 0.0035 15.9 3.7 40 34-76 71-115 (189)
407 cd04502 SGNH_hydrolase_like_7 20.7 1.2E+02 0.0025 16.1 2.1 38 33-73 49-97 (171)
408 TIGR01968 minD_bact septum sit 20.7 1.8E+02 0.0039 16.5 3.6 10 34-43 111-120 (261)
409 PRK00331 glucosamine--fructose 20.7 2.7E+02 0.0058 18.7 4.0 26 48-78 351-376 (604)
410 PF13580 SIS_2: SIS domain; PD 20.6 1.5E+02 0.0032 15.4 3.0 8 65-72 130-137 (138)
411 PF12847 Methyltransf_18: Meth 20.6 96 0.0021 14.9 1.7 9 34-42 70-78 (112)
412 cd00300 LDH_like L-lactate deh 20.5 2E+02 0.0042 17.4 3.2 41 33-76 65-119 (300)
413 cd04861 LigD_Pol_like LigD_Pol 20.5 1.9E+02 0.0042 17.0 3.0 19 33-51 96-114 (227)
414 cd01968 Nitrogenase_NifE_I Nit 20.5 1.6E+02 0.0035 18.6 2.9 43 29-75 81-127 (410)
415 KOG1467 Translation initiation 20.5 2.8E+02 0.0061 18.6 3.9 35 34-72 385-419 (556)
416 TIGR01630 psiM2_ORF9 phage unc 20.4 1.5E+02 0.0032 15.4 4.0 41 30-73 39-80 (142)
417 COG0132 BioD Dethiobiotin synt 20.4 1.8E+02 0.0039 17.0 2.8 36 34-74 106-145 (223)
418 cd01835 SGNH_hydrolase_like_3 20.2 1.6E+02 0.0036 15.8 3.3 14 33-46 68-81 (193)
419 cd01840 SGNH_hydrolase_yrhL_li 20.2 1.5E+02 0.0033 15.4 4.0 39 34-74 50-88 (150)
420 cd06329 PBP1_SBP_like_3 Peripl 20.1 2.1E+02 0.0046 17.1 4.7 38 29-71 196-233 (342)
421 PLN03049 pyridoxine (pyridoxam 20.0 1.8E+02 0.0038 19.0 3.0 32 37-71 63-94 (462)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.43 E-value=1e-12 Score=73.60 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=55.7
Q ss_pred CchhHHHHHHHHhcCCCceeeecCh--hH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSPTD--TE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++++.........+...||++..+. .+ .+... ||+||+|+.||+++|+++|+++| .. ....+|||++|+..+
T Consensus 7 eDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR-~~-~~~~~PIi~Lta~~~ 83 (229)
T COG0745 7 EDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLR-AK-KGSGPPIIVLTARDD 83 (229)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHH-hh-cCCCCcEEEEECCCc
Confidence 4556666666666666777665543 33 34445 99999999999999999999999 43 678889999999865
Q ss_pred hh
Q 039883 77 LA 78 (82)
Q Consensus 77 ~~ 78 (82)
..
T Consensus 84 ~~ 85 (229)
T COG0745 84 EE 85 (229)
T ss_pred HH
Confidence 44
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.38 E-value=2.7e-12 Score=77.58 Aligned_cols=76 Identities=21% Similarity=0.348 Sum_probs=59.6
Q ss_pred CchhHHHHHHHHhcCCCceeeecC--hh---HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSPT--DT---EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
||+..++......+...||.+..+ +. +++....||+|++|++||+++|+++++.++ ...+..|||++|++++
T Consensus 11 DDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~---~~~~~~pVI~~Tg~g~ 87 (464)
T COG2204 11 DDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIK---SRDPDLPVIVMTGHGD 87 (464)
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHH---hhCCCCCEEEEeCCCC
Confidence 667777766666666666666554 34 344455799999999999999999999999 6679999999999988
Q ss_pred hhhh
Q 039883 77 LARI 80 (82)
Q Consensus 77 ~~~~ 80 (82)
.+.+
T Consensus 88 i~~A 91 (464)
T COG2204 88 IDTA 91 (464)
T ss_pred HHHH
Confidence 6654
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-11 Score=66.95 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=56.8
Q ss_pred CchhHHHHHHHH--hcCCCceeeecChhHHhhcc---CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLM--SDGSDGFDLSPTDTEEVHVL---AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..++..... ...+....++.++.+.+... .|.|+|+|++||+++|.++..+|. ......|||++|++++
T Consensus 11 DDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~---~~~~~~PVIfiTGhgD 87 (202)
T COG4566 11 DDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLA---ERGIRLPVIFLTGHGD 87 (202)
T ss_pred cCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHH---hcCCCCCEEEEeCCCC
Confidence 455555544444 44444455566677666654 688999999999999999999999 7889999999999988
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
...
T Consensus 88 Ipm 90 (202)
T COG4566 88 IPM 90 (202)
T ss_pred hHH
Confidence 654
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=9.3e-12 Score=68.38 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=56.4
Q ss_pred HHHHHhcCCCceeeecChh------HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhhhh
Q 039883 9 LSRLMSDGSDGFDLSPTDT------EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81 (82)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~~~ 81 (82)
........-.+|+++..+. ..+...+||+|++|..||+.+|++++..++ ..+..+-||++|+..+.+.++
T Consensus 15 ih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir---~~~~~~DVI~iTAA~d~~tI~ 90 (224)
T COG4565 15 IHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELR---SQHYPVDVIVITAASDMETIK 90 (224)
T ss_pred HHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHH---hcCCCCCEEEEeccchHHHHH
Confidence 4444445567787766533 456677999999999999999999999999 788899999999999887664
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-11 Score=74.76 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=57.3
Q ss_pred CchhHHHHHHHH--hcCCCceeeecC---hhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 2 TTTNGVLLSRLM--SDGSDGFDLSPT---DTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 2 d~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
||.+.++.-... .-...+++++.. |.+++ ...+||+||+|++||+++|+++++.++ ...+.+.+|++|+
T Consensus 8 DDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ik---e~~p~~~~IILSG 84 (475)
T COG4753 8 DDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIK---EQSPDTEFIILSG 84 (475)
T ss_pred cChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHH---HhCCCceEEEEec
Confidence 445444432222 234457777554 44554 466899999999999999999999999 6789999999999
Q ss_pred CCchhhhh
Q 039883 74 ENILARID 81 (82)
Q Consensus 74 ~~~~~~~~ 81 (82)
..+.+.++
T Consensus 85 y~eFeYak 92 (475)
T COG4753 85 YDEFEYAK 92 (475)
T ss_pred cchhHHHH
Confidence 99887654
No 6
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.24 E-value=5.5e-11 Score=66.00 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHhc-CCCceeeec---ChhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSD-GSDGFDLSP---TDTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|+.+.++.-..... ....+++.. ++.+++ ...+||++|+|+.||+++|++.++.++ ...+..+++++|..
T Consensus 7 DDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~---~~~p~~~vvvlt~~ 83 (211)
T COG2197 7 DDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLR---ARGPDIKVVVLTAH 83 (211)
T ss_pred CCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHH---HHCCCCcEEEEecc
Confidence 45555554433332 233366533 244444 466899999999999999999999999 67888899999999
Q ss_pred Cchhhhh
Q 039883 75 NILARID 81 (82)
Q Consensus 75 ~~~~~~~ 81 (82)
.+...+.
T Consensus 84 ~~~~~v~ 90 (211)
T COG2197 84 DDPAYVI 90 (211)
T ss_pred CCHHHHH
Confidence 8876653
No 7
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-10 Score=68.11 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHhcCCCceeeecC--hhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSPT--DTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+.+.........+...+|.+..+ +.. .....+||++++|++||+++|+++|.+++...+....+|++++|+..+
T Consensus 21 DD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d 100 (360)
T COG3437 21 DDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYAD 100 (360)
T ss_pred cCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHhcCCcccccceEEEeecCC
Confidence 555555555444555566666544 443 334457999999999999999999999993256788899999999988
Q ss_pred hhhh
Q 039883 77 LARI 80 (82)
Q Consensus 77 ~~~~ 80 (82)
.+..
T Consensus 101 ~~~~ 104 (360)
T COG3437 101 SEDR 104 (360)
T ss_pred hHHH
Confidence 7654
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.18 E-value=6.1e-11 Score=59.22 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=46.8
Q ss_pred CCce-ee--ecChh---HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 17 SDGF-DL--SPTDT---EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~-~~--~~~~~---~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..++ .+ +.+.. ..+....||++++|+.+++.+|.++++.++ ...+.+|+|++|...+...
T Consensus 20 ~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~---~~~~~~~ii~~t~~~~~~~ 85 (112)
T PF00072_consen 20 RAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIR---QINPSIPIIVVTDEDDSDE 85 (112)
T ss_dssp HTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHH---HHTTTSEEEEEESSTSHHH
T ss_pred hCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccc---cccccccEEEecCCCCHHH
Confidence 5555 44 44444 445677899999999999999999999999 4458999999998776543
No 9
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.07 E-value=4.5e-10 Score=64.62 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHhcCCCc--eeeecChh---HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDG--FDLSPTDT---EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..+.......+...+ ...+.... +.+...+||++++|+.||+++|++|+..++ ...+.+|+|++|++..
T Consensus 7 Ddd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr---~i~~~v~iifIssh~e 83 (361)
T COG3947 7 DDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVR---DIESAVPIIFISSHAE 83 (361)
T ss_pred cchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCCEEEEEeecCCccHHHHHHHHH---HhhccCcEEEEecchh
Confidence 445555554444444434 22222222 445677999999999999999999999999 6779999999998855
Q ss_pred h
Q 039883 77 L 77 (82)
Q Consensus 77 ~ 77 (82)
.
T Consensus 84 y 84 (361)
T COG3947 84 Y 84 (361)
T ss_pred h
Confidence 3
No 10
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.02 E-value=2.1e-09 Score=64.94 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhcCCCceeeecC--hhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 4 TNGVLLSRLMSDGSDGFDLSPT--DTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
...........+...|+.+..+ +.++ +...+||+||+|+.||+++|+++++++| .......+|+|++++..+..
T Consensus 141 ~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr-~~~~t~~ipii~~~~~~d~~ 219 (435)
T COG3706 141 DATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLR-QLERTRDIPIILLSSKDDDE 219 (435)
T ss_pred cHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEecCCCccCHHHHHHHHh-cccccccccEEEEecccchH
Confidence 3333333333444444555444 4443 3455899999999999999999999999 55667889999999987765
Q ss_pred h
Q 039883 79 R 79 (82)
Q Consensus 79 ~ 79 (82)
.
T Consensus 220 ~ 220 (435)
T COG3706 220 L 220 (435)
T ss_pred H
Confidence 4
No 11
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.94 E-value=7.6e-09 Score=66.59 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=51.8
Q ss_pred HHHHhcCCCceeeecChhHHhhcc----CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhhh
Q 039883 10 SRLMSDGSDGFDLSPTDTEEVHVL----AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARI 80 (82)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~----~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~~ 80 (82)
...+...+..+....++.+++... .||++++|+.||.+||++..+++| .... +++|||++|+..+....
T Consensus 683 ~~~l~~~g~~~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~ir-k~~~-~~~pIvAlTa~~~~~~~ 755 (786)
T KOG0519|consen 683 TGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIR-KKER-WHLPIVALTADADPSTE 755 (786)
T ss_pred HHHHHHhCCeeEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHH-Hhhc-CCCCEEEEecCCcHHHH
Confidence 334444455555555666777654 599999999999999999999999 4333 89999999998766543
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=98.94 E-value=8e-09 Score=57.62 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=39.7
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+...+||++++|+.||+++|+++++.++ ...+..++|++|+..+...
T Consensus 45 ~~~~~~pdlvllD~~mp~~~gle~~~~l~---~~~~~~~iivls~~~~~~~ 92 (225)
T PRK10046 45 MIERFKPGLILLDNYLPDGRGINLLHELV---QAHYPGDVVFTTAASDMET 92 (225)
T ss_pred HHHhcCCCEEEEeCCCCCCcHHHHHHHHH---hcCCCCCEEEEEcCCCHHH
Confidence 34556799999999999999999999999 4456678999998776543
No 13
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=98.91 E-value=1.8e-08 Score=51.43 Aligned_cols=58 Identities=28% Similarity=0.417 Sum_probs=42.8
Q ss_pred CceeeecChh-HHh---hcc-CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDLSPTDT-EEV---HVL-AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~~~~~~-~~~---~~~-~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+....++. +++ ... .||++++|..||+++|+++++.++ ...+..|++++|+.....
T Consensus 30 ~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~---~~~~~~pvv~~t~~~~~~ 92 (130)
T COG0784 30 YEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLR---ARGPNIPVILLTAYADEA 92 (130)
T ss_pred CeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHH---hCCCCCCEEEEEcCcCHH
Confidence 4444455553 444 444 399999999999999999999999 335677788888776654
No 14
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.87 E-value=1.1e-08 Score=66.21 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=45.7
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+..+.++.++ +...+||+||+|+.||+++|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 692 ~~v~~~~~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~~lr-~~~~~~~~pii~lt~~~~~~~ 755 (919)
T PRK11107 692 EHVVLCDSGHQAVEQAKQRPFDLILMDIQMPGMDGIRACELIR-QLPHNQNTPIIAVTAHAMAGE 755 (919)
T ss_pred CEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHH-hcccCCCCCEEEEeCCCCHHH
Confidence 333444455544 4456899999999999999999999999 433466789999998766543
No 15
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=98.87 E-value=1e-08 Score=66.91 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=45.5
Q ss_pred CCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+|++ +.++.++ +...+||+||+|+.||+++|+++++.+| ...+.+|+|++|+....+
T Consensus 823 ~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~~mP~mdG~el~~~ir---~~~~~~pII~lTa~~~~~ 886 (924)
T PRK10841 823 SLGYQCKTANDGVDALNVLSKNHIDIVLTDVNMPNMDGYRLTQRLR---QLGLTLPVIGVTANALAE 886 (924)
T ss_pred HcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHH---hcCCCCCEEEEECCCCHH
Confidence 344444 4455544 4455799999999999999999999999 456778999999876544
No 16
>PLN03029 type-a response regulator protein; Provisional
Probab=98.83 E-value=7.8e-08 Score=53.82 Aligned_cols=44 Identities=68% Similarity=1.125 Sum_probs=35.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+|+||+|+.||+++|+++++.++ .......+|+|++++......
T Consensus 73 ~dlVllD~~mp~~~G~e~l~~ir-~~~~~~~ipvIils~~~~~~~ 116 (222)
T PLN03029 73 VNLIITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSR 116 (222)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHH-hccccCCCcEEEEeCCCCHHH
Confidence 67999999999999999999999 322346789999998765543
No 17
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=98.81 E-value=4e-08 Score=54.25 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=44.4
Q ss_pred CCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+ ..+..++ +....||++++|..+|+.+|+++++.++ ...+.+|+|++++..+.+
T Consensus 22 ~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr---~~~~~~pii~ls~~~~~~ 85 (223)
T PRK10816 22 DAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWR---SNDVSLPILVLTARESWQ 85 (223)
T ss_pred HCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHH---hcCCCCCEEEEEcCCCHH
Confidence 344444 3444433 4455799999999999999999999999 456788999999876654
No 18
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=98.79 E-value=5.1e-08 Score=53.54 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=38.6
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|+.+|+.+|.++++.++ ...+..|+|++++..+..
T Consensus 40 ~~~~~~d~illd~~~~~~~g~~~~~~l~---~~~~~~pii~ls~~~~~~ 85 (222)
T PRK10643 40 LESGHYSLVVLDLGLPDEDGLHLLRRWR---QKKYTLPVLILTARDTLE 85 (222)
T ss_pred HHhCCCCEEEEECCCCCCCHHHHHHHHH---hcCCCCcEEEEECCCCHH
Confidence 4455799999999999999999999998 456778999999876544
No 19
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=98.78 E-value=2.9e-08 Score=55.12 Aligned_cols=59 Identities=10% Similarity=0.240 Sum_probs=43.8
Q ss_pred CCcee--eecChhHHh---hccCccEEE---EeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFD--LSPTDTEEV---HVLAVDLII---TDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~--~~~~~~~~~---~~~~~d~vi---~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+|. ...++.+++ ...+||++| +|..||+++|++++++++ ...+..|||++|+..+..
T Consensus 15 ~~~~~v~~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~---~~~p~~~iIvlt~~~~~~ 81 (207)
T PRK11475 15 GNPYKLHTFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELA---IKFPRMRRLVIADDDIEA 81 (207)
T ss_pred CCeeEEEEeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHH---HHCCCCCEEEEeCCCCHH
Confidence 34554 333444444 344789998 688899999999999998 568889999999876543
No 20
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.78 E-value=3.2e-08 Score=64.21 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCceee--ecChhHHhh---c-cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL--SPTDTEEVH---V-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~--~~~~~~~~~---~-~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++++ +.++.+++. . .+||+|++|+.||+++|+++++.++ ...+.+|+|++|+.....
T Consensus 703 ~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr---~~~~~~~ii~~t~~~~~~ 767 (914)
T PRK11466 703 TSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLA---QQYPSLVLIGFSAHVIDE 767 (914)
T ss_pred hcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCCEEEEeCCCchh
Confidence 344444 445555443 2 3689999999999999999999999 456789999999886554
No 21
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.77 E-value=7.3e-08 Score=56.95 Aligned_cols=71 Identities=27% Similarity=0.289 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHhcCCCc-eeeecC---hh---HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSDGSDG-FDLSPT---DT---EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~-~~~~~~---~~---~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|++..++........+.+ .+++.. +. +.+....||+|.+|..||.++|+++++.+- . ...+|||++++.
T Consensus 8 ddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im---~-~~p~pVimvssl 83 (350)
T COG2201 8 DDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIM---R-LRPLPVIMVSSL 83 (350)
T ss_pred cCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHh---c-CCCCcEEEEecc
Confidence 566666655555544444 565443 33 455677899999999999999999999987 3 478899999975
Q ss_pred Cc
Q 039883 75 NI 76 (82)
Q Consensus 75 ~~ 76 (82)
..
T Consensus 84 t~ 85 (350)
T COG2201 84 TE 85 (350)
T ss_pred cc
Confidence 44
No 22
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=98.77 E-value=6.9e-08 Score=52.96 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=38.9
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+++.+|.++++.++ ...+..|+|++|+..+..
T Consensus 40 ~~~~~~dlvild~~l~~~~g~~~~~~i~---~~~~~~~ii~lt~~~~~~ 85 (219)
T PRK10336 40 LYSAPYDAVILDLTLPGMDGRDILREWR---EKGQREPVLILTARDALA 85 (219)
T ss_pred HhhCCCCEEEEECCCCCCCHHHHHHHHH---hcCCCCcEEEEECCCCHH
Confidence 4455799999999999999999999999 456778999999876654
No 23
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.76 E-value=4e-08 Score=64.00 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=44.0
Q ss_pred CCceeeecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCC-CCccEEEEeeCCchhh
Q 039883 17 SDGFDLSPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTF-REIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~~~~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~-~~~~vi~ls~~~~~~~ 79 (82)
++.+..+.++.+ .+...+||+||+|+.||+++|+++++.++ ..... ..+|+|++|+....+.
T Consensus 726 g~~v~~~~~~~~a~~~l~~~~~dlvl~D~~mp~~~g~~~~~~ir-~~~~~~~~~pii~lta~~~~~~ 791 (968)
T TIGR02956 726 GHKVTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLLQQLR-AIYGAKNEVKFIAFSAHVFNED 791 (968)
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH-hCccccCCCeEEEEECCCCHHH
Confidence 333444445554 34556799999999999999999999999 22222 2289999998766543
No 24
>PRK15029 arginine decarboxylase; Provisional
Probab=98.76 E-value=6.8e-08 Score=61.98 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=45.4
Q ss_pred hcCCCceeeec--Chh---HHhhc-cCccEEEEeCCCCCCCHH----HHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 14 SDGSDGFDLSP--TDT---EEVHV-LAVDLIITDYCMPGMTGC----ELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 14 ~~~~~~~~~~~--~~~---~~~~~-~~~d~vi~d~~~~~~~~~----~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+...+|++.. ++. +.+.. ..||+||+|+.||+++|+ ++++++| .....+|||++|+..+
T Consensus 27 ~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR---~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 27 ALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH---ERQQNVPVFLLGDREK 96 (755)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHH---hhCCCCCEEEEEcCCc
Confidence 33445565544 444 34444 479999999999999997 8999999 5567899999998875
No 25
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=98.76 E-value=7.3e-08 Score=53.76 Aligned_cols=59 Identities=14% Similarity=0.381 Sum_probs=44.2
Q ss_pred CCceeee--cChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLS--PTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~--~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++++. .++.+ .+....||++|+|..+|+.+|+++++.++ ...+.+|+|++++..+..
T Consensus 27 ~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr---~~~~~~pii~ls~~~~~~ 90 (239)
T PRK09468 27 EQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLR---SQNNPTPIIMLTAKGEEV 90 (239)
T ss_pred HCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEECCCcHH
Confidence 3445443 34443 34456799999999999999999999999 455788999999876544
No 26
>PRK15115 response regulator GlrR; Provisional
Probab=98.76 E-value=4.6e-08 Score=59.30 Aligned_cols=59 Identities=25% Similarity=0.493 Sum_probs=44.7
Q ss_pred CCceeeec--ChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLSP--TDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~~--~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+.. +..++ +....||+||+|..||+++|+++++.++ ...+.+|+|++|+..+..
T Consensus 27 ~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~lp~~~g~~ll~~l~---~~~~~~pvIvlt~~~~~~ 90 (444)
T PRK15115 27 SEGYSVVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQLFAEIQ---KVQPGMPVIILTAHGSIP 90 (444)
T ss_pred HCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHH---hcCCCCcEEEEECCCCHH
Confidence 34455443 44443 4455799999999999999999999998 557788999999876543
No 27
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=98.76 E-value=6.9e-08 Score=53.44 Aligned_cols=46 Identities=17% Similarity=0.443 Sum_probs=38.7
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|+.+|+.+|+++++.++ ...+.+|+|++++..+.+
T Consensus 40 ~~~~~~dlvild~~~~~~~g~~~~~~lr---~~~~~~pii~ls~~~~~~ 85 (227)
T PRK09836 40 AMTGDYDLIILDIMLPDVNGWDIVRMLR---SANKGMPILLLTALGTIE 85 (227)
T ss_pred HhhCCCCEEEEECCCCCCCHHHHHHHHH---hcCCCCCEEEEEcCCCHH
Confidence 3455799999999999999999999999 455788999999876544
No 28
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=98.75 E-value=9e-08 Score=52.86 Aligned_cols=58 Identities=26% Similarity=0.432 Sum_probs=42.5
Q ss_pred CCceeeec--ChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLSP--TDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~~--~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+.. ++.++ +....||++++|+.+|+.+|.++++.++ . .+..|+|++++..+.+
T Consensus 23 ~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr---~-~~~~pvi~lt~~~~~~ 85 (225)
T PRK10529 23 GDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLR---Q-WSAIPVIVLSARSEES 85 (225)
T ss_pred HCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---c-CCCCCEEEEECCCCHH
Confidence 34555433 33333 3445799999999999999999999999 3 3568999999766543
No 29
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=98.74 E-value=8.4e-08 Score=50.73 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=57.1
Q ss_pred CchhHHHHHHHHhcCCCceeeecChh--HH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSPTDT--EE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..+.....-.....||++..+.+ ++ .+...|.-.++|+.+.+.+|+.+++.|+ .......+|++|++.+
T Consensus 16 dDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr---~~~~d~rivvLTGy~s 92 (182)
T COG4567 16 DDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALR---ERRADMRIVVLTGYAS 92 (182)
T ss_pred cCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHH---hcCCcceEEEEecchH
Confidence 45555554445555667777765544 44 4556899999999999999999999999 7788999999999877
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
...
T Consensus 93 IAT 95 (182)
T COG4567 93 IAT 95 (182)
T ss_pred HHH
Confidence 543
No 30
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.74 E-value=5.9e-08 Score=61.32 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=45.0
Q ss_pred Cceeee--cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLS--PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~--~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|.+. .++.++ +....||+||+|+.||+++|.++++.++ ...+.+|+|++|+..+...
T Consensus 30 ~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~lp~~~g~~~l~~l~---~~~~~~piI~lt~~~~~~~ 93 (665)
T PRK13558 30 GRLDVTQIRDFVAARDRVEAGEIDCVVADHEPDGFDGLALLEAVR---QTTAVPPVVVVPTAGDEAV 93 (665)
T ss_pred cCcceEeeCCHHHHHHHhhccCCCEEEEeccCCCCcHHHHHHHHH---hcCCCCCEEEEECCCCHHH
Confidence 345443 444444 4455799999999999999999999999 5677899999998766543
No 31
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.73 E-value=5.2e-08 Score=63.19 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=45.3
Q ss_pred CCceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhc-CCCCCccEEEEeeCCchhh
Q 039883 17 SDGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQS-FTFREIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~-~~~~~~~vi~ls~~~~~~~ 79 (82)
+..+..+.++.++ +...+||+|++|+.||+++|+++++.+|... ...+.+|+|++|+..+...
T Consensus 714 g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~ 780 (921)
T PRK15347 714 GQQVTTAASGTEALELGRQHRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEE 780 (921)
T ss_pred CCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHH
Confidence 3444444555554 4455799999999999999999999998211 1246789999998766543
No 32
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=98.72 E-value=1.2e-07 Score=52.17 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=38.5
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+|+.+|.++++.++ .....+.+|+|++++..+..
T Consensus 42 ~~~~~~d~vi~d~~~~~~~g~~~~~~l~-~~~~~~~~~ii~ls~~~~~~ 89 (226)
T TIGR02154 42 INERGPDLILLDWMLPGTSGIELCRRLR-RRPETRAIPIIMLTARGEEE 89 (226)
T ss_pred HHhcCCCEEEEECCCCCCcHHHHHHHHH-ccccCCCCCEEEEecCCCHH
Confidence 4455799999999999999999999998 32234678999999876544
No 33
>PRK11173 two-component response regulator; Provisional
Probab=98.72 E-value=9.5e-08 Score=53.32 Aligned_cols=58 Identities=17% Similarity=0.421 Sum_probs=42.9
Q ss_pred CCceee--ecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL--SPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~--~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+ ..++.+ .+....||++++|+.+|+.+|+++++.++ .. +..|+|++++..+..
T Consensus 25 ~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr---~~-~~~pii~lt~~~~~~ 87 (237)
T PRK11173 25 AEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELR---EQ-ANVALMFLTGRDNEV 87 (237)
T ss_pred HcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHh---cC-CCCCEEEEECCCCHH
Confidence 344544 344443 34455799999999999999999999999 33 468999999876543
No 34
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=98.72 E-value=1.1e-07 Score=52.05 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=39.3
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....||++++|+.+|+.+|.++++.++ ...+..|+|++++..+..
T Consensus 37 ~~~~~~~dlvl~d~~~~~~~g~~~~~~l~---~~~~~~~iivls~~~~~~ 83 (218)
T TIGR01387 37 LALKDDYDLIILDVMLPGMDGWQILQTLR---RSGKQTPVLFLTARDSVA 83 (218)
T ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHH---ccCCCCcEEEEEcCCCHH
Confidence 34455799999999999999999999999 556788999999776654
No 35
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.72 E-value=7.9e-08 Score=63.98 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=51.1
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+++.............++++ +.++.++ +...+||+||+|+.||+++|+++++.++ ...+..|+|++|+..+
T Consensus 965 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~~i~---~~~~~~pii~lt~~~~ 1041 (1197)
T PRK09959 965 DDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLR---EQNSSLPIWGLTANAQ 1041 (1197)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEECCCC
Confidence 344444433333233334444 4444444 4455799999999999999999999999 5567889999998866
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
...
T Consensus 1042 ~~~ 1044 (1197)
T PRK09959 1042 ANE 1044 (1197)
T ss_pred HHH
Confidence 543
No 36
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=98.71 E-value=1.1e-07 Score=53.42 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=38.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+||++|+|+.||+++|+++++.++ ...+.+|+|++|+..+...
T Consensus 48 ~~~DlvilD~~~p~~~G~eli~~l~---~~~~~~~vI~ls~~~~~~~ 91 (239)
T PRK10430 48 TPIDLILLDIYMQQENGLDLLPVLH---EAGCKSDVIVISSAADAAT 91 (239)
T ss_pred CCCCEEEEecCCCCCCcHHHHHHHH---hhCCCCCEEEEECCCcHHH
Confidence 4699999999999999999999998 5567889999998766543
No 37
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=98.71 E-value=1.4e-07 Score=52.32 Aligned_cols=48 Identities=29% Similarity=0.523 Sum_probs=38.5
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+++.+|.++++.++ .....+.+|+|++++..+..
T Consensus 42 ~~~~~~dlvild~~l~~~~g~~~~~~l~-~~~~~~~~pvi~ls~~~~~~ 89 (229)
T PRK10161 42 LNEPWPDLILLDWMLPGGSGIQFIKHLK-RESMTRDIPVVMLTARGEEE 89 (229)
T ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHH-hccccCCCCEEEEECCCCHH
Confidence 4455799999999999999999999998 32234678999999876543
No 38
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=98.71 E-value=1.4e-07 Score=52.10 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=42.8
Q ss_pred Cceeeec--ChhH---HhhccCccEEEEeCCCCC--CCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDLSP--TDTE---EVHVLAVDLIITDYCMPG--MTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~~~--~~~~---~~~~~~~d~vi~d~~~~~--~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++++.. ++.+ .+....||++++|+.+|+ .+|.++++.++ ...+..|+|++|+..+..
T Consensus 23 ~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~---~~~~~~pii~ls~~~~~~ 87 (227)
T TIGR03787 23 QGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLR---SLSATLPIIFLTARDSDF 87 (227)
T ss_pred CCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHH---hcCCCCCEEEEECCCCHH
Confidence 4555533 3333 344557999999999997 58999999998 445678999999876654
No 39
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=98.70 E-value=1.5e-07 Score=51.90 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=39.1
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....||++++|..+|+.+|.++++.++ ...+.+|+|++++..+..
T Consensus 42 ~~~~~~~dlvl~d~~~~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 88 (228)
T PRK11083 42 KLRQQPPDLVILDVGLPDISGFELCRQLL---AFHPALPVIFLTARSDEV 88 (228)
T ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCCEEEEEcCCcHH
Confidence 34455799999999999999999999999 455788999999876543
No 40
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.69 E-value=8.9e-08 Score=58.34 Aligned_cols=59 Identities=25% Similarity=0.487 Sum_probs=44.1
Q ss_pred CCceeeec--ChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLSP--TDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~~--~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++++.. +..++ +....||+|++|+.||+++|+++++.++ ...+.+|+|++|+..+..
T Consensus 20 ~~g~~v~~~~~~~~al~~~~~~~~DlVllD~~~p~~~g~~ll~~l~---~~~~~~~vIvlt~~~~~~ 83 (463)
T TIGR01818 20 RAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIK---KRHPQLPVIVMTAHSDLD 83 (463)
T ss_pred HcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHH---HhCCCCeEEEEeCCCCHH
Confidence 34455443 33433 4455799999999999999999999998 456778999999776543
No 41
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.68 E-value=1e-07 Score=58.26 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=44.7
Q ss_pred CCceee--ecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL--SPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~--~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+ ..++.+ .+....||++|+|+.||+++|+++++.++ ...+.+|+|++|+..+.+
T Consensus 25 ~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~lp~~dgl~~l~~ir---~~~~~~pvIvlt~~~~~~ 88 (469)
T PRK10923 25 GAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIK---QRHPMLPVIIMTAHSDLD 88 (469)
T ss_pred HcCCEEEEECCHHHHHHHHhcCCCCEEEECCCCCCCCHHHHHHHHH---hhCCCCeEEEEECCCCHH
Confidence 344544 334443 34456799999999999999999999998 456788999999876654
No 42
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=98.68 E-value=2.2e-07 Score=51.56 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=37.6
Q ss_pred HhhccCccEEEEeCC--CCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 29 EVHVLAVDLIITDYC--MPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~--~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.+...+||++|+|+. ++..+|.++++.++ ...+..++|++|+..+.
T Consensus 42 ~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~---~~~p~~~iivlt~~~~~ 89 (207)
T PRK15411 42 ACDSLRPSVVFINEDCFIHDASNSQRIKQII---NQHPNTLFIVFMAIANI 89 (207)
T ss_pred HHhccCCCEEEEeCcccCCCCChHHHHHHHH---HHCCCCeEEEEECCCch
Confidence 344567999999965 88788999999998 56778999999987654
No 43
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.68 E-value=1.2e-07 Score=57.43 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=43.7
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++.+ +.++.++ +....||+|++|+.||+++|+++++.++ ...+.+|+|++|+..+.+
T Consensus 28 ~g~~v~~~~~~~~al~~l~~~~~DlvilD~~m~~~~G~~~~~~ir---~~~~~~~vi~lt~~~~~~ 90 (441)
T PRK10365 28 WGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIK---ALNPAIPVLIMTAYSSVE 90 (441)
T ss_pred CCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCeEEEEECCCCHH
Confidence 34444 4444444 3445799999999999999999999998 456788999999875543
No 44
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.67 E-value=1.3e-07 Score=57.44 Aligned_cols=58 Identities=17% Similarity=0.380 Sum_probs=44.1
Q ss_pred Cceeee--cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDLS--PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~~--~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++++. .+..++ +....||++++|+.||+++|+++++.++ ...+.+|+|++|+..+.+
T Consensus 27 ~g~~v~~~~~~~~al~~l~~~~~dlillD~~~p~~~g~~ll~~i~---~~~~~~pvI~lt~~~~~~ 89 (457)
T PRK11361 27 QGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMR---SHETRTPVILMTAYAEVE 89 (457)
T ss_pred CCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEeCCCCHH
Confidence 445544 344443 4455799999999999999999999998 456788999999876544
No 45
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=98.65 E-value=2.2e-07 Score=51.16 Aligned_cols=57 Identities=18% Similarity=0.385 Sum_probs=42.3
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++++ ..++.++ +....||++++|..+|+.+|.++++.++ . .+.+|+|++++..+..
T Consensus 25 ~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr---~-~~~~~ii~l~~~~~~~ 86 (221)
T PRK10766 25 EGYTVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELR---S-RSTVGIILVTGRTDSI 86 (221)
T ss_pred cCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---h-CCCCCEEEEECCCcHH
Confidence 44544 3344433 4455799999999999999999999999 3 2478999999776554
No 46
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=98.65 E-value=2.5e-07 Score=51.20 Aligned_cols=54 Identities=31% Similarity=0.413 Sum_probs=42.2
Q ss_pred ecChhHH---hhccCccEEEEeCCCCC---CCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 23 SPTDTEE---VHVLAVDLIITDYCMPG---MTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 23 ~~~~~~~---~~~~~~d~vi~d~~~~~---~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+.++.++ +...+||++|+|+.+|+ .+|.++++.++ ...+.+|+|++|...+...
T Consensus 35 ~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~---~~~~~~~iIvls~~~~~~~ 94 (216)
T PRK10840 35 FEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIK---RHFPSLSIIVLTMNNNPAI 94 (216)
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHH---HHCCCCcEEEEEecCCHHH
Confidence 3444444 34557999999999999 59999999998 4577889999998876554
No 47
>PRK09483 response regulator; Provisional
Probab=98.64 E-value=3.2e-07 Score=50.37 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=39.4
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+...+||++|+|+.+++.+|.++++.++ ...+.+|+|+++...+..
T Consensus 42 ~~~~~~~dlvi~d~~~~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 88 (217)
T PRK09483 42 WCRTNAVDVVLMDMNMPGIGGLEATRKIL---RYTPDVKIIMLTVHTENP 88 (217)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH---HHCCCCeEEEEeCCCCHH
Confidence 34556899999999999999999999998 456788999999776544
No 48
>PRK10693 response regulator of RpoS; Provisional
Probab=98.64 E-value=1.3e-07 Score=55.07 Aligned_cols=47 Identities=30% Similarity=0.508 Sum_probs=39.8
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+....||+|++|+.||+++|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 13 l~~~~pDlVL~D~~mp~~~Gle~~~~ir---~~~~~ipiI~lt~~~~~~~ 59 (303)
T PRK10693 13 LGGFTPDLIICDLAMPRMNGIEFVEHLR---NRGDQTPVLVISATENMAD 59 (303)
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCcEEEEECCCCHHH
Confidence 4556799999999999999999999999 4466789999998876543
No 49
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=98.64 E-value=3.8e-07 Score=50.97 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=38.6
Q ss_pred cChhHHhh-ccCccEEEEeCCCCCCCHHHHH-HHHHhhcCCCCCccEEEEeeCCc
Q 039883 24 PTDTEEVH-VLAVDLIITDYCMPGMTGCELI-KKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 24 ~~~~~~~~-~~~~d~vi~d~~~~~~~~~~~~-~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.++.+++. ..+||++|+|+.||+.+|++++ +.++ ...+.++||++|...+
T Consensus 41 ~~~~~~~~~~~~~DvvllDi~~p~~~G~~~~~~~i~---~~~p~~~vvvlt~~~~ 92 (216)
T PRK10100 41 HNIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLS---RKNNNIKILLLNTPED 92 (216)
T ss_pred cCHHHhhccCCCCCEEEEECCCCCccHHHHHHHHHH---HhCCCCcEEEEECCch
Confidence 34445544 2258999999999999999986 5677 5677899999998765
No 50
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=98.63 E-value=4.6e-07 Score=49.32 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=43.7
Q ss_pred CCceeee---cChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLS---PTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~---~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+. .+..+ .+....||++++|..+|+.+|.++++.++ ...+..|+|++++..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 86 (204)
T PRK09958 22 KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLR---KRQYSGIIIIVSAKNDHF 86 (204)
T ss_pred cCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCeEEEEeCCCCHH
Confidence 4566553 23333 34455799999999999999999999998 455667899998866543
No 51
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.62 E-value=3.1e-07 Score=55.32 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=40.9
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+...+||+|++|+.||+++|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 194 ~~~~~~d~vi~d~~~p~~~g~~l~~~i~-~~~~~~~~~ii~ls~~~~~~~ 242 (457)
T PRK09581 194 AAETNYDLVIVSANFENYDPLRLCSQLR-SKERTRYVPILLLVDEDDDPR 242 (457)
T ss_pred cccCCCCEEEecCCCCCchHhHHHHHHH-hccccCCCcEEEEeCCCChHH
Confidence 4456899999999999999999999999 333457899999999876544
No 52
>PRK13856 two-component response regulator VirG; Provisional
Probab=98.62 E-value=3.3e-07 Score=51.35 Aligned_cols=54 Identities=19% Similarity=0.411 Sum_probs=40.2
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.++.+ +.++.++ +....||++++|+.+|+.+|+++++.++ . ....|+|++++..
T Consensus 24 ~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~l~~~i~---~-~~~~pii~lt~~~ 82 (241)
T PRK13856 24 HAFKVTAVADSQQFNRVLASETVDVVVVDLNLGREDGLEIVRSLA---T-KSDVPIIIISGDR 82 (241)
T ss_pred cCCEEEEECCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHH---h-cCCCcEEEEECCC
Confidence 44544 3344433 4456799999999999999999999998 3 3468999998743
No 53
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=98.62 E-value=3.4e-07 Score=51.17 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=41.7
Q ss_pred CCceeee--cChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 17 SDGFDLS--PTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 17 ~~~~~~~--~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..++.+. .++.+ .+....||++++|+.+|+.+|+++++.++ . ....|+|++++..+.
T Consensus 23 ~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir---~-~~~~pii~l~~~~~~ 84 (240)
T PRK10701 23 KHDIDVTVEPRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLR---P-KWQGPIVLLTSLDSD 84 (240)
T ss_pred HcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHH---h-cCCCCEEEEECCCCH
Confidence 3455443 34443 34456899999999999999999999999 3 345689999876554
No 54
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=98.59 E-value=3.9e-07 Score=50.43 Aligned_cols=42 Identities=21% Similarity=0.475 Sum_probs=35.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..||++++|+.+|+.+|.++++.++ ...+ .|+|++|+..+..
T Consensus 43 ~~~d~vl~d~~~~~~~g~~~~~~l~---~~~~-~~ii~lt~~~~~~ 84 (232)
T PRK10955 43 DSIDLLLLDVMMPKKNGIDTLKELR---QTHQ-TPVIMLTARGSEL 84 (232)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHH---hcCC-CcEEEEECCCCHH
Confidence 3799999999999999999999999 3344 8999999776543
No 55
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.59 E-value=3.6e-07 Score=58.72 Aligned_cols=59 Identities=20% Similarity=0.459 Sum_probs=41.5
Q ss_pred CCceeeecChhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCC-ccEEEEeeCCc
Q 039883 17 SDGFDLSPTDTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFRE-IPTVIISSENI 76 (82)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~-~~vi~ls~~~~ 76 (82)
+..+..+.++.+++ ...+||+|++|+.||+++|+++++.++ .....+. +|+|++|+...
T Consensus 549 g~~v~~a~~~~eal~~~~~~~~Dlvl~D~~mp~~~G~e~~~~ir-~~~~~~~~~~ii~~ta~~~ 611 (779)
T PRK11091 549 GNSVDVAMTGKEALEMFDPDEYDLVLLDIQLPDMTGLDIARELR-ERYPREDLPPLVALTANVL 611 (779)
T ss_pred CCEEEEECCHHHHHHHhhcCCCCEEEEcCCCCCCCHHHHHHHHH-hccccCCCCcEEEEECCch
Confidence 34444455555544 455799999999999999999999999 2222244 48888887543
No 56
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=98.58 E-value=5.9e-07 Score=49.45 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=37.0
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+|+.+|.++++.++ .. ...|+|++++..+..
T Consensus 40 ~~~~~~dlvi~d~~~~~~~g~~~~~~l~---~~-~~~~ii~ls~~~~~~ 84 (223)
T PRK11517 40 ALKDDYALIILDIMLPGMDGWQILQTLR---TA-KQTPVICLTARDSVD 84 (223)
T ss_pred HhcCCCCEEEEECCCCCCCHHHHHHHHH---cC-CCCCEEEEECCCCHH
Confidence 3455799999999999999999999998 33 468999999766544
No 57
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=98.58 E-value=1e-06 Score=50.12 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=38.1
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....||+|++|+.||+++|+++++.++ .......+|+|++|+..+..
T Consensus 43 ~l~~~~~DlvllD~~mp~~dG~~~l~~i~-~~~~~~~~~iI~lt~~~~~~ 91 (262)
T TIGR02875 43 LIKEQQPDVVVLDIIMPHLDGIGVLEKLN-EIELSARPRVIMLSAFGQEK 91 (262)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH-hhccccCCeEEEEeCCCCHH
Confidence 34456799999999999999999999998 32233348899999776544
No 58
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.58 E-value=7.8e-07 Score=54.09 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=44.2
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCC-----CCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPG-----MTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~-----~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|++ +.++.++ +....||+|++|+.||+ ++|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 19 ~~~~v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~---~~~~~~piI~lt~~~~~~~ 87 (445)
T TIGR02915 19 ADYELAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQIL---AIAPDTKVIVITGNDDREN 87 (445)
T ss_pred CCCeEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcCCCCCHHHHHHHHH---hhCCCCCEEEEecCCCHHH
Confidence 34444 3444443 44557999999999996 89999999998 5677899999998766543
No 59
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=98.56 E-value=5.6e-07 Score=48.46 Aligned_cols=46 Identities=24% Similarity=0.505 Sum_probs=38.3
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+++.+|+++++.++ ...+.+|+|+++...+..
T Consensus 43 ~~~~~~d~ii~d~~~~~~~~~~~~~~l~---~~~~~~~ii~l~~~~~~~ 88 (202)
T PRK09390 43 LPGLRFGCVVTDVRMPGIDGIELLRRLK---ARGSPLPVIVMTGHGDVP 88 (202)
T ss_pred hccCCCCEEEEeCCCCCCcHHHHHHHHH---hcCCCCCEEEEECCCCHH
Confidence 4445799999999999999999999998 456788999999765543
No 60
>CHL00148 orf27 Ycf27; Reviewed
Probab=98.55 E-value=5.9e-07 Score=49.96 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=37.4
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|+.+|+.+|.++++.++ .. +.+|+|++++..+..
T Consensus 46 ~~~~~~d~illd~~~~~~~g~~~~~~l~---~~-~~~~ii~ls~~~~~~ 90 (240)
T CHL00148 46 FRKEQPDLVILDVMMPKLDGYGVCQEIR---KE-SDVPIIMLTALGDVS 90 (240)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHH---hc-CCCcEEEEECCCCHH
Confidence 4455799999999999999999999998 33 578999999876544
No 61
>PRK14084 two-component response regulator; Provisional
Probab=98.54 E-value=1.4e-06 Score=49.07 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=39.0
Q ss_pred ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 23 SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 23 ~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+.++.++ +....||++++|+.||+++|+++++.++ ...+.+++|++|+..+
T Consensus 32 ~~~~~~~l~~~~~~~~dlv~lDi~m~~~~G~~~~~~i~---~~~~~~~iI~~t~~~~ 85 (246)
T PRK14084 32 AENVKETLEALLINQYDIIFLDINLMDESGIELAAKIQ---KMKEPPAIIFATAHDQ 85 (246)
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCEEEEEecChH
Confidence 4444444 3445799999999999999999999999 4456677888887543
No 62
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=98.53 E-value=1.1e-06 Score=47.93 Aligned_cols=47 Identities=30% Similarity=0.427 Sum_probs=39.0
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....||++++|..+|+.+|.++++.++ ...+.+|+|++++..+..
T Consensus 44 ~~~~~~~dlvild~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 90 (210)
T PRK09935 44 YLRTRPVDLIIMDIDLPGTDGFTFLKRIK---QIQSTVKVLFLSSKSECF 90 (210)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH---HhCCCCcEEEEECCCcHH
Confidence 34556799999999999999999999998 446678999999876543
No 63
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.43 E-value=1.8e-06 Score=52.02 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=39.2
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....||+|++|+.+|+.+|.++++.++ .....+.+|+|++++..+..
T Consensus 41 ~~~~~~~dlvi~d~~~~~~~g~~l~~~i~-~~~~~~~~~ii~~s~~~~~~ 89 (457)
T PRK09581 41 ICEREQPDIILLDVMMPGMDGFEVCRRLK-SDPATTHIPVVMVTALDDPE 89 (457)
T ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHH-cCcccCCCCEEEEECCCCHH
Confidence 34555799999999999999999999998 32234578999999876654
No 64
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=98.43 E-value=2.1e-06 Score=47.12 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=38.3
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+|+.+|.++++.++ ...+..|+|++++..+..
T Consensus 40 ~~~~~~d~vild~~~~~~~~~~~~~~i~---~~~~~~~ii~lt~~~~~~ 85 (221)
T PRK15479 40 LQSEMYALAVLDINMPGMDGLEVLQRLR---KRGQTLPVLLLTARSAVA 85 (221)
T ss_pred HhhCCCCEEEEeCCCCCCcHHHHHHHHH---hcCCCCCEEEEECCCCHH
Confidence 4455799999999999999999999998 456678999998776544
No 65
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=98.41 E-value=1.9e-06 Score=50.89 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=41.1
Q ss_pred CCceeee---cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 17 SDGFDLS---PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 17 ~~~~~~~---~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..++++. .++.++ +....||+|++|+.||+++|+++++.++ . ....|++++++...
T Consensus 23 ~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~mp~~~G~e~l~~l~---~-~~~~pvivvs~~~~ 84 (337)
T PRK12555 23 DPDHEVVWVATDGAQAVERCAAQPPDVILMDLEMPRMDGVEATRRIM---A-ERPCPILIVTSLTE 84 (337)
T ss_pred CCCCEEEEEECCHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH---H-HCCCcEEEEeCCCC
Confidence 4455543 334443 4455799999999999999999999998 2 23478999987643
No 66
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=98.33 E-value=7.5e-06 Score=45.79 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=33.4
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+....||++++|+.||+++|+++++.++ . ...+++|++|+..+
T Consensus 43 ~~~~~~dlv~lDi~~~~~~G~~~~~~l~---~-~~~~~ii~vt~~~~ 85 (238)
T PRK11697 43 IHRLKPDVVFLDIQMPRISGLELVGMLD---P-EHMPYIVFVTAFDE 85 (238)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHhc---c-cCCCEEEEEeccHH
Confidence 3445799999999999999999999887 2 23456888887643
No 67
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=98.33 E-value=5.1e-06 Score=46.19 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=36.4
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+....||++++|..+++.+|.++++.++ . .+..|++++++..+.
T Consensus 50 ~~~~~~dlvl~d~~~~~~~g~~~~~~l~---~-~~~~pii~l~~~~~~ 93 (240)
T PRK10710 50 VRQTPPDLILLDLMLPGTDGLTLCREIR---R-FSDIPIVMVTAKIEE 93 (240)
T ss_pred HhhCCCCEEEEeCCCCCCCHHHHHHHHH---h-cCCCCEEEEEcCCCH
Confidence 4455799999999999999999999998 3 346899999876544
No 68
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=98.32 E-value=4.7e-06 Score=49.50 Aligned_cols=41 Identities=34% Similarity=0.419 Sum_probs=34.6
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+....||++++|+.||+++|+++++.++ ...+ +|+|+++..
T Consensus 45 ~~~~~~DlVllD~~mp~~dgle~l~~i~---~~~~-~piIvls~~ 85 (354)
T PRK00742 45 IKKLNPDVITLDVEMPVMDGLDALEKIM---RLRP-TPVVMVSSL 85 (354)
T ss_pred HhhhCCCEEEEeCCCCCCChHHHHHHHH---HhCC-CCEEEEecC
Confidence 4455799999999999999999999998 3344 899999864
No 69
>PRK09191 two-component response regulator; Provisional
Probab=98.28 E-value=7.9e-06 Score=46.27 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=36.0
Q ss_pred HhhccCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 29 EVHVLAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.+....||++++|+.+|+ .+|.++++.++ ... .+|+|++++..+.
T Consensus 177 ~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~---~~~-~~pii~ls~~~~~ 222 (261)
T PRK09191 177 LAKKTRPGLILADIQLADGSSGIDAVNDIL---KTF-DVPVIFITAFPER 222 (261)
T ss_pred HHhccCCCEEEEecCCCCCCCHHHHHHHHH---HhC-CCCEEEEeCCCcH
Confidence 344557999999999995 78999999998 334 7899999986543
No 70
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=98.22 E-value=8e-06 Score=44.77 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=43.9
Q ss_pred CCceeeecChh------HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhhhh
Q 039883 17 SDGFDLSPTDT------EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILARID 81 (82)
Q Consensus 17 ~~~~~~~~~~~------~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~~~ 81 (82)
..||..+.+.. +.....+||+|++|+.+|..+-.+-+.. . ......|+|++|+.+++..++
T Consensus 27 eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd~~e~~~~-~---~~~~~~piv~lt~~s~p~~i~ 93 (194)
T COG3707 27 EAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEALLL-A---SENVARPIVALTAYSDPALIE 93 (194)
T ss_pred HcCCeEeeeecccccchhHHHhcCCCEEEEecCCCCccHHHHHHH-h---hcCCCCCEEEEEccCChHHHH
Confidence 45666655433 4566779999999999999994333332 3 356778999999999887664
No 71
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=98.22 E-value=3.7e-05 Score=41.53 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=37.9
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+++.+|.++++.++ ...+..|+|++++..+..
T Consensus 45 ~~~~~~dlvl~d~~~~~~~~~~~~~~l~---~~~~~~~ii~ls~~~~~~ 90 (211)
T PRK15369 45 CRQLEPDIVILDLGLPGMNGLDVIPQLH---QRWPAMNILVLTARQEEH 90 (211)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHH---HHCCCCcEEEEeCCCCHH
Confidence 4456799999999999999999999998 445678999999766543
No 72
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=98.19 E-value=2e-05 Score=42.57 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=35.0
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+...+||++++|+.+++.+|.++++.++ . ..|+++++...+.+
T Consensus 43 ~~~~~~dlvi~d~~~~~~~g~~~~~~l~---~---~~~vi~~s~~~~~~ 85 (196)
T PRK10360 43 LPGRGVQVCICDISMPDISGLELLSQLP---K---GMATIMLSVHDSPA 85 (196)
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHc---c---CCCEEEEECCCCHH
Confidence 4445799999999999999999998887 2 46899998876544
No 73
>PRK10651 transcriptional regulator NarL; Provisional
Probab=98.18 E-value=2.9e-05 Score=42.30 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=37.7
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....||++++|..+++.+|.++++.++ ...+..|+++++...+..
T Consensus 48 ~~~~~~dlvl~d~~l~~~~~~~~~~~l~---~~~~~~~vi~l~~~~~~~ 93 (216)
T PRK10651 48 AESLDPDLILLDLNMPGMNGLETLDKLR---EKSLSGRIVVFSVSNHEE 93 (216)
T ss_pred HHhCCCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCcEEEEeCCCCHH
Confidence 4445799999999999999999999998 445678899998765543
No 74
>PRK10403 transcriptional regulator NarP; Provisional
Probab=98.13 E-value=4.1e-05 Score=41.64 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=37.1
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+....||++++|..+++.+|.++++.++ ...+..|+++++...+.
T Consensus 48 ~~~~~~dlvi~d~~~~~~~~~~~~~~l~---~~~~~~~ii~l~~~~~~ 92 (215)
T PRK10403 48 ANRLDPDVILLDLNMKGMSGLDTLNALR---RDGVTAQIIILTVSDAS 92 (215)
T ss_pred HHhcCCCEEEEecCCCCCcHHHHHHHHH---HhCCCCeEEEEeCCCCh
Confidence 4455799999999999999999999998 45667789999866544
No 75
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.03 E-value=8.8e-05 Score=35.22 Aligned_cols=45 Identities=31% Similarity=0.516 Sum_probs=36.3
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+....|+++++|..+++.++.++++.++ ...+..|+++++....
T Consensus 36 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~---~~~~~~~~i~~~~~~~ 80 (113)
T cd00156 36 LLAEEKPDLILLDIMMPGMDGLELLRRIR---KRGPDIPIIFLTAHGD 80 (113)
T ss_pred HHHhCCCCEEEEecCCCCCchHHHHHHHH---HhCCCCCEEEEEeccc
Confidence 34455799999999999999999999998 3366788898886543
No 76
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=98.00 E-value=7.1e-05 Score=37.03 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=36.5
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+....||++++|..+++.+|+++++.++ .....+..|+++++...+.
T Consensus 46 ~~~~~~di~l~d~~~~~~~~~~~~~~l~-~~~~~~~~~~i~~~~~~~~ 92 (129)
T PRK10610 46 LQAGGFGFVISDWNMPNMDGLELLKTIR-ADGAMSALPVLMVTAEAKK 92 (129)
T ss_pred hhccCCCEEEEcCCCCCCCHHHHHHHHH-hCCCcCCCcEEEEECCCCH
Confidence 4445799999999999999999999998 3223456788988866543
No 77
>PRK13435 response regulator; Provisional
Probab=97.97 E-value=7.4e-05 Score=38.82 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.8
Q ss_pred hhccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 30 VHVLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+....||++++|..++ +.+|.++++.++ . ....|+|++++..+
T Consensus 46 ~~~~~~dliivd~~~~~~~~~~~~~~~l~---~-~~~~pii~ls~~~~ 89 (145)
T PRK13435 46 GRRRQPDVALVDVHLADGPTGVEVARRLS---A-DGGVEVVFMTGNPE 89 (145)
T ss_pred hhhcCCCEEEEeeecCCCCcHHHHHHHHH---h-CCCCCEEEEeCCHH
Confidence 3345799999999998 479999999988 2 34789999987543
No 78
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=97.90 E-value=4.1e-05 Score=43.67 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=40.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+.+....||++++|+.||+++|+++.+.++ ...+.++|+++|+..+.
T Consensus 41 ~~~~~~~~~~~fldI~~~~~~G~ela~~i~---~~~~~~~Ivfvt~~~~~ 87 (244)
T COG3279 41 QLLQGLRPDLVFLDIAMPDINGIELAARIR---KGDPRPAIVFVTAHDEY 87 (244)
T ss_pred HHHhccCCCeEEEeeccCccchHHHHHHhc---ccCCCCeEEEEEehHHH
Confidence 556667999999999999999999999999 55777888888887653
No 79
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.87 E-value=8.1e-05 Score=48.72 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhcCCCceeee--cChhHHhhc---c--CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 4 TNGVLLSRLMSDGSDGFDLS--PTDTEEVHV---L--AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~--~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++.............+|++. .+..+++.. . +||+||+ .+|+++|.++++.++ ...+.+|+|++++...
T Consensus 706 d~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~---~~~~~ipIIvls~~~~ 780 (828)
T PRK13837 706 DDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALH---AAAPTLPIILGGNSKT 780 (828)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHH---hhCCCCCEEEEeCCCc
Confidence 33333333333334556654 444444332 2 3799999 799999999999999 5677899999998765
Q ss_pred hh
Q 039883 77 LA 78 (82)
Q Consensus 77 ~~ 78 (82)
..
T Consensus 781 ~~ 782 (828)
T PRK13837 781 MA 782 (828)
T ss_pred hh
Confidence 44
No 80
>PRK13557 histidine kinase; Provisional
Probab=97.71 E-value=0.00053 Score=42.35 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=34.8
Q ss_pred CccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 34 AVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.||++++|..+++ .+|+++++.++ ...+..|+|+++.....
T Consensus 460 ~~d~vi~d~~~~~~~~~~~~~~~l~---~~~~~~~ii~~~~~~~~ 501 (540)
T PRK13557 460 EVDLLFTDLIMPGGMNGVMLAREAR---RRQPKIKVLLTTGYAEA 501 (540)
T ss_pred CceEEEEeccCCCCCCHHHHHHHHH---HhCCCCcEEEEcCCCch
Confidence 5999999999997 89999999999 45667899999876553
No 81
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0023 Score=39.51 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=32.3
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+...+|+.+++|..||+++|+++++.++ . .+.+ ++++|..
T Consensus 26 ~~~~~~~~~~~lld~~m~~~~~~~~~~~lk-~---~~~~-~v~~t~~ 67 (435)
T COG3706 26 AILLDHKPDYKLLDVMMPGMDGFELCRRLK-A---EPAT-VVMVTAL 67 (435)
T ss_pred HHHhcCCCCeEEeecccCCcCchhHHHHHh-c---CCcc-eEEEEec
Confidence 345577899999999999999999999999 2 2222 5666544
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.59 E-value=0.19 Score=33.64 Aligned_cols=58 Identities=3% Similarity=-0.033 Sum_probs=34.2
Q ss_pred CCceeeecChh-HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 17 SDGFDLSPTDT-EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..++.+..+.. +.+....||++++|..+|+..+...+...... ......++++++...
T Consensus 558 ~~g~~v~~~~~~~~l~~~~~d~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 616 (919)
T PRK11107 558 ETPLEVTYSPTLSQLPEAHYDILLLGLPVTFREPLTMLHERLAK-AKSMTDFLILALPCH 616 (919)
T ss_pred HCCCEEEEcCCHHHhccCCCCEEEecccCCCCCCHHHHHHHHHh-hhhcCCcEEEEeCCc
Confidence 45555544333 22566789999999999987776654444312 223334566665543
No 83
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=92.28 E-value=0.45 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHhhccCccEEEEeCCCC--CC----CHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMP--GM----TGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~--~~----~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.+...++|++++|+..- .. ....|++.|| ...|.+||++++..
T Consensus 53 ~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR---~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 53 DLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIR---EAHPDTPILLVSPI 102 (178)
T ss_dssp HHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHH---TT-SSS-EEEEE--
T ss_pred HHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHH---HhCCCCCEEEEecC
Confidence 456666889999998543 11 1345677778 78999999999954
No 84
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=91.86 E-value=0.83 Score=24.61 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=27.4
Q ss_pred hhccCccEEEEeCCCCCCCHH--------HHHHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMPGMTGC--------ELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~--------~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+...+||+|++.+..-+.... .+++.++ ...+.+||++++..
T Consensus 53 ~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~---~~~p~~~iil~~~~ 102 (177)
T cd01844 53 LRDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLR---ETHPDTPILLVSPR 102 (177)
T ss_pred HHhcCCCEEEEEeccCCCccHHHHHHHHHHHHHHHH---HHCcCCCEEEEecC
Confidence 445689999997766655333 2344555 45677889988854
No 85
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.56 E-value=1.3 Score=22.31 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=32.8
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCC-CccEEE
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFR-EIPTVI 70 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~-~~~vi~ 70 (82)
.....||++..-+. +.+...+||+|.+...+... ...++++.+| ...+ .+++++
T Consensus 22 ~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~---~~~~~~~~i~v 86 (119)
T cd02067 22 ALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELK---EAGLDDIPVLV 86 (119)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHH---HcCCCCCeEEE
Confidence 34456777744322 45667799999998875542 3456677777 3344 444444
No 86
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=90.52 E-value=0.88 Score=23.11 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=27.5
Q ss_pred CccEEEEeCCCCC--CCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPG--MTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~--~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..++|++++. ++ ....++++.++ ..+..+||.+++...
T Consensus 38 ~i~avvi~~d-~~~~~~~~~ll~~i~---~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 38 DIAAVVISWD-GEEEDEAQELLDKIR---ERNFGIPVFLLAERD 77 (115)
T ss_dssp TEEEEEEECH-HHHHHHHHHHHHHHH---HHSTT-EEEEEESCC
T ss_pred CeeEEEEEcc-cccchhHHHHHHHHH---HhCCCCCEEEEecCC
Confidence 5778999998 21 12356778888 678899999999854
No 87
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=90.30 E-value=0.94 Score=20.10 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHhh-cCCCCCccEEEEeeCCc
Q 039883 46 GMTGCELIKKIKLQ-SFTFREIPTVIISSENI 76 (82)
Q Consensus 46 ~~~~~~~~~~l~~~-~~~~~~~~vi~ls~~~~ 76 (82)
..+|.++++++... .......||++.+.-..
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~Lg~ 34 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSMLGV 34 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCCCC
Confidence 56899999999723 34566778888775543
No 88
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=88.58 E-value=0.91 Score=17.62 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=11.1
Q ss_pred hhccCccEEEEeCCCC
Q 039883 30 VHVLAVDLIITDYCMP 45 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~ 45 (82)
+....|+++++|+.++
T Consensus 40 ~~~~~~~~vi~~~~~~ 55 (55)
T smart00448 40 LKEEKPDLILLDIMMP 55 (55)
T ss_pred HHhcCCCEEEEeccCC
Confidence 3444689999987653
No 89
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.30 E-value=2.1 Score=21.45 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=27.8
Q ss_pred HHhhccCccEEEEeCC-CCCC-CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYC-MPGM-TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~-~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+.+...+||+|.+... .+.. ...++++.+| ...+.+++++--.
T Consensus 45 ~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k---~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 45 EALRAERPDVVGISVSMTPNLPEAKRLARAIK---ERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHTTCSEEEEEESSSTHHHHHHHHHHHHH---TTCTTSEEEEEES
T ss_pred HHHhcCCCcEEEEEccCcCcHHHHHHHHHHHH---hcCCCCEEEEECC
Confidence 4456679999999884 3433 3455666767 5667766666543
No 90
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=86.75 E-value=2.8 Score=21.14 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=34.9
Q ss_pred HhcCCCceeeecChhH--HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 13 MSDGSDGFDLSPTDTE--EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...++.++...+.+- .......+.+++-..-.. ...+.++.+. ...+..|++++......
T Consensus 19 LeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-~~~~~l~~l~---~~~~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 19 LEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSCS-KLAELLKELL---KWAPHIPVLLLGEHDSP 81 (109)
T ss_pred hhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCch-hHHHHHHHHH---hhCCCCCEEEECCCCcc
Confidence 3444555555554331 122334444433333333 5566777777 67899999999876654
No 91
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=86.55 E-value=2.2 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.4
Q ss_pred CccEEEEeCCC-------CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 34 AVDLIITDYCM-------PGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 34 ~~d~vi~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.++.+|+|++= +---+.++++.|+ ....|++++|....
T Consensus 7 ~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~-----~~g~~~iflTNn~~ 51 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEAIPGAAEALKRLK-----AAGKPVIFLTNNST 51 (269)
T ss_pred hcCEEEEcCcCceEeCCccCchHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 57888888732 1122677888888 55679999997754
No 92
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=86.48 E-value=3 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=29.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+||++|+ +..|+.| +.+.+.+| ...+.+|++-..++
T Consensus 75 ~~pd~~i~-iD~p~Fn-l~lak~~k---~~~~~i~viyyi~P 111 (347)
T PRK14089 75 KQADKVLL-MDSSSFN-IPLAKKIK---KAYPKKEIIYYILP 111 (347)
T ss_pred cCCCEEEE-eCCCCCC-HHHHHHHH---hcCCCCCEEEEECc
Confidence 47998777 7778888 67888888 55668899887765
No 93
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=86.39 E-value=3.7 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=29.9
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.+...+||++|+ ++.||.| +.+.+++| ....+.|++-..++
T Consensus 304 ~~i~~~kPD~vIl-ID~PgFN-lrLAK~lk---k~Gi~ipviyYVsP 345 (608)
T PRK01021 304 KTILKTNPRTVIC-IDFPDFH-FLLIKKLR---KRGYKGKIVHYVCP 345 (608)
T ss_pred HHHHhcCCCEEEE-eCCCCCC-HHHHHHHH---hcCCCCCEEEEECc
Confidence 3455668998887 7788988 67888888 34444588877655
No 94
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=85.56 E-value=3.4 Score=21.10 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=29.3
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHH
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIK 57 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~ 57 (82)
.....||++...+. +++...+||+|.+...+... ..-++++.++
T Consensus 22 ~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~ 75 (122)
T cd02071 22 ALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLR 75 (122)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHH
Confidence 45567888766543 45667799999998887643 2244566676
No 95
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=85.17 E-value=4.8 Score=22.48 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=37.0
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.....||++..-+. +.+...+||+|-+...+.... -.++++.++ .....+.+++++--..
T Consensus 107 ~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~-~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 107 MLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLK-EEGYRDSVKFMVGGAP 176 (197)
T ss_pred HHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHH-HcCCCCCCEEEEEChh
Confidence 44557888865433 567778999999999876532 244566777 2222445666554433
No 96
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=85.11 E-value=2 Score=25.17 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+.++..+||+||.|.... .....+ ...+|+|.++....
T Consensus 88 ~~l~~~~pDlVIsD~~~~------~~~aa~-----~~giP~i~i~~~~~ 125 (318)
T PF13528_consen 88 RWLREFRPDLVISDFYPL------AALAAR-----RAGIPVIVISNQYW 125 (318)
T ss_pred HHHHhcCCCEEEEcChHH------HHHHHH-----hcCCCEEEEEehHH
Confidence 446677899999996444 122223 55688888886543
No 97
>PLN02775 Probable dihydrodipicolinate reductase
Probab=84.56 E-value=4.5 Score=24.21 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=29.2
Q ss_pred hhHHhhcc---CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 26 DTEEVHVL---AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 26 ~~~~~~~~---~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+.+... .|++|++|...|.. ..+.++... ...+|+++-|...+.+
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~P~a-~~~~~~~~~-----~~g~~~VvGTTG~~~e 117 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTLPDA-VNDNAELYC-----KNGLPFVMGTTGGDRD 117 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCChHH-HHHHHHHHH-----HCCCCEEEECCCCCHH
Confidence 33455444 79999999999983 355555544 2345666666555444
No 98
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.25 E-value=4.4 Score=25.47 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=28.7
Q ss_pred HhhccCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEE
Q 039883 29 EVHVLAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
.+....+|+|.+|...+. ....++++++| ...+..++|+
T Consensus 160 ~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik---~~~p~~~vi~ 199 (404)
T PRK06843 160 ELVKAHVDILVIDSAHGHSTRIIELVKKIK---TKYPNLDLIA 199 (404)
T ss_pred HHHhcCCCEEEEECCCCCChhHHHHHHHHH---hhCCCCcEEE
Confidence 344457999999999874 45567888888 5666777655
No 99
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=84.13 E-value=5.8 Score=22.55 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+...||++..-+. +++...+||+|.+...++.. ...++++.++ .....++|++--...+
T Consensus 111 ~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~---~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 111 ILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMN---RRGIKIPLLIGGAATS 180 (213)
T ss_pred HHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHH---hcCCCCeEEEEChhcC
Confidence 44457787755433 56677799999999888753 2344667777 3455677666554433
No 100
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=83.78 E-value=2.7 Score=21.46 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=27.4
Q ss_pred Hhhc-cCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 29 EVHV-LAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 29 ~~~~-~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
.+.. .+||+|.+.+..... ...++++.+| ...+++++++--
T Consensus 33 ~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik---~~~p~~~iv~GG 75 (127)
T cd02068 33 DIKELLKPDVVGISLMTSAIYEALELAKIAK---EVLPNVIVVVGG 75 (127)
T ss_pred HHHHhcCCCEEEEeeccccHHHHHHHHHHHH---HHCCCCEEEECC
Confidence 3444 689999998865544 3466788888 456666666543
No 101
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=83.66 E-value=5.8 Score=22.17 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=36.3
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.....||++..-+. +++...+||+|-+...+... ...++++.++ .......++|++--..
T Consensus 105 ~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr-~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 105 MLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALK-EAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHH-HCCCCcCCeEEEECCc
Confidence 34457777764322 45667799999999877653 3345667777 2222226666665443
No 102
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=80.99 E-value=5.5 Score=20.11 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=22.7
Q ss_pred ccEEE-EeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLII-TDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi-~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
-|++| +...-...+-.+.++..+ ....++|.+|+..+..
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~-----~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLK-----RRGAPIIAITGNPNST 87 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH-----HCCCeEEEEeCCCCCc
Confidence 34433 333333334456666666 3468999999876544
No 103
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=80.81 E-value=3.1 Score=24.72 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=19.8
Q ss_pred CceeeecChh----HHhhccCccEEEEeCCC
Q 039883 18 DGFDLSPTDT----EEVHVLAVDLIITDYCM 44 (82)
Q Consensus 18 ~~~~~~~~~~----~~~~~~~~d~vi~d~~~ 44 (82)
.+|+.+.+.. |.+...+||+||-|..=
T Consensus 91 ~~ytSVGTRsQPslE~Is~LKPDLIIAD~sR 121 (310)
T COG4594 91 DPYTSVGTRSQPSLEAISALKPDLIIADSSR 121 (310)
T ss_pred CCcccccCCCCCCHHHHhccCCCeEEecchh
Confidence 4455555443 78999999999998753
No 104
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.21 E-value=4.3 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=26.7
Q ss_pred CccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEE
Q 039883 34 AVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 34 ~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
.+|+|.+|...+.. ...++++++| ...+.+|||+-
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir---~~~p~~~vi~g 146 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIK---KHLPETFVIAG 146 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHH---hhCCCCeEEEE
Confidence 35999999999764 3466888888 56777887773
No 105
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.12 E-value=9.7 Score=22.34 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.+....+|.|++|+.....+-.++...++ .-......|++-+...
T Consensus 34 e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~-a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 34 EVLGLAGFDWLVLDGEHAPNDVSTFIPQLM-ALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHhcCCCEEEEccccCCCCHHHHHHHHH-HHhhcCCCcEEECCCC
Confidence 667777899999999999998888777776 3223444555555543
No 106
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.16 E-value=7.5 Score=20.50 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=30.7
Q ss_pred HhcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHH
Q 039883 13 MSDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIK 57 (82)
Q Consensus 13 ~~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~ 57 (82)
......||++..-+. +++....||+|.+...+... ...++++.++
T Consensus 25 ~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 25 RALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 344568888866543 45667789999999887743 2345667776
No 107
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=79.16 E-value=5.3 Score=20.12 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=23.8
Q ss_pred hccCcc--EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 31 HVLAVD--LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 31 ~~~~~d--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
....++ ++++...-....-.+.++.++ ....++|.+|...+..
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak-----~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAK-----ERGAPVILITSNSESP 93 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHH-----HTTSEEEEEESSTTSH
T ss_pred ccccccceeEeeeccccchhhhhhhHHHH-----hcCCeEEEEeCCCCCc
Confidence 333444 344453333333455566655 4457889999776544
No 108
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=78.72 E-value=11 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.9
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..+||++|+ +..|+.| +.+.+++| ...+..|+|-..++.
T Consensus 83 ~~kpD~~i~-IDsPdFn-l~vak~lr---k~~p~i~iihYV~Ps 121 (381)
T COG0763 83 ANKPDVLIL-IDSPDFN-LRVAKKLR---KAGPKIKIIHYVSPS 121 (381)
T ss_pred hcCCCEEEE-eCCCCCc-hHHHHHHH---HhCCCCCeEEEECcc
Confidence 457997543 4456666 78899999 778899999887664
No 109
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=78.61 E-value=2.5 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=25.4
Q ss_pred HHhhccCccEEEEeCCCCCCCH-HHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGMTG-CELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~-~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||.+.......+ .+.+..|+ ...+|++++.
T Consensus 73 E~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~-----~~gipv~~~~ 113 (284)
T cd01148 73 ETVLAARPDLVFGGWSYGFDKGGLGTPDSLA-----ELGIKTYILP 113 (284)
T ss_pred HHHhcCCCCEEEEecccccCCCCCCCHHHHH-----HCCCeEEECc
Confidence 6788889999999865433222 33345555 2346777775
No 110
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=78.52 E-value=8.1 Score=20.92 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||....... -+....+. ...+|++.+..
T Consensus 63 E~ll~l~PDlii~~~~~~~---~~~~~~l~-----~~gIpvv~i~~ 100 (186)
T cd01141 63 ELIVALKPDLVILYGGFQA---QTILDKLE-----QLGIPVLYVNE 100 (186)
T ss_pred HHHhccCCCEEEEecCCCc---hhHHHHHH-----HcCCCEEEeCC
Confidence 6678889999998543322 14566665 23367877753
No 111
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=78.32 E-value=11 Score=23.53 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=27.3
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+...+||++|+ +..|+.| +.+.+.+| ......|++-..++
T Consensus 77 ~~~~~~pd~vIl-ID~pgFN-lrlak~lk---~~~~~~~viyYI~P 117 (373)
T PF02684_consen 77 RIKEEKPDVVIL-IDYPGFN-LRLAKKLK---KRGIPIKVIYYISP 117 (373)
T ss_pred HHHHcCCCEEEE-eCCCCcc-HHHHHHHH---HhCCCceEEEEECC
Confidence 445668997554 3457766 78888898 45666667776654
No 112
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=78.29 E-value=6.1 Score=21.40 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=23.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|.+...+||+||...... .+....++ ...+|++++...
T Consensus 54 E~l~~l~PDlii~~~~~~----~~~~~~l~-----~~gi~v~~~~~~ 91 (195)
T cd01143 54 EKIVALKPDLVIVSSSSL----AELLEKLK-----DAGIPVVVLPAA 91 (195)
T ss_pred HHHhccCCCEEEEcCCcC----HHHHHHHH-----HcCCcEEEeCCC
Confidence 667888999999865432 22455555 234567766543
No 113
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=77.04 E-value=1.2 Score=30.61 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=25.1
Q ss_pred chhHHHHHHHHhcCCCceeeecChhHHhhccCccEEEEeCCC
Q 039883 3 TTNGVLLSRLMSDGSDGFDLSPTDTEEVHVLAVDLIITDYCM 44 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~d~~~ 44 (82)
+++..+......+...|+++..+.+ ......||+||+|..+
T Consensus 697 D~~~~r~~l~~~L~~~G~~v~~a~~-~~~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 697 TSEEVRKIVTRQLENWGATCITPDE-RLISQEYDIFLTDNPS 737 (894)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEcCc-cccCCCCCEEEECCCC
Confidence 3444444444455567777765543 2345579999999883
No 114
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=75.51 E-value=6.5 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=25.6
Q ss_pred HHhhccCccEEEEeCCCCCCC-HHHHHHHHHhhcCCCC-CccEEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGMT-GCELIKKIKLQSFTFR-EIPTVII 71 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~-~~~~~~~l~~~~~~~~-~~~vi~l 71 (82)
+.+...+||+|.+........ ..+.+..++ ...+ .+++++-
T Consensus 44 ~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~---~~~p~~~~ivvG 86 (125)
T cd02065 44 EAAKEEDADVVGLSALSTTHMEAMKLVIEAL---KELGIDIPVVVG 86 (125)
T ss_pred HHHHHcCCCEEEEecchHhHHHHHHHHHHHH---HhcCCCCeEEEe
Confidence 455667899999988776533 355555665 2334 5555543
No 115
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.34 E-value=7.9 Score=20.19 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=23.6
Q ss_pred hhccCccEEEEeCCCCCC----CH-------HHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPGM----TG-------CELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~----~~-------~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+...+||+|++-+..-+. +. ..+++.++ ...+.+++++++.
T Consensus 36 ~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~---~~~p~~~ii~~~~ 87 (157)
T cd01833 36 VLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMR---AANPDVKIIVATL 87 (157)
T ss_pred cccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHH---HhCCCeEEEEEeC
Confidence 445589999995544432 21 12445555 4466777777654
No 116
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=74.17 E-value=13 Score=22.32 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||........ +..+....++ ...+|++++..
T Consensus 85 E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~-----~~gipvv~~~~ 126 (342)
T cd01139 85 EKVLTLKPDLVILNIWAKTTAEESGILEKLE-----QAGIPVVFVDF 126 (342)
T ss_pred HHHhhcCCCEEEEeccccccchhhHHHHHHH-----HcCCcEEEEeC
Confidence 77888899999987554321 2345666666 22468888763
No 117
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=73.66 E-value=6.6 Score=22.14 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+....||+|+....... ......++ ...+|++++..
T Consensus 52 E~i~~l~PDlIi~~~~~~~---~~~~~~l~-----~~gipvv~~~~ 89 (235)
T cd01149 52 EGVLSLKPTLVIASDEAGP---PEALDQLR-----AAGVPVVTVPS 89 (235)
T ss_pred HHhhccCCCEEEEcCCCCC---HHHHHHHH-----HcCCeEEEecC
Confidence 6677889999987533322 24455555 33367777754
No 118
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=72.91 E-value=9.9 Score=21.24 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=25.4
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
|.+...+||+||..... ...+....+. ...+|++++....
T Consensus 54 E~i~~l~PDlIi~~~~~---~~~~~~~~~~-----~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFY---GQSEEIEKLL-----EAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTS---SCHHHHHHHH-----HTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccc---cchHHHHHHh-----cccceEEEeeccc
Confidence 77888899999998877 2233344443 3467888887654
No 119
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.15 E-value=17 Score=21.24 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=32.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+++....+|.|++|+.....+-.++...++ .-....-.|++-+...
T Consensus 27 e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~-a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 27 EVLGLAGFDWLLLDGEHAPNDVLTFIPQLM-ALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHhcCCCEEEEecccCCCCHHHHHHHHH-HHhhcCCCcEEECCCC
Confidence 667777899999999999998888777776 3223444555555443
No 120
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=72.04 E-value=14 Score=20.14 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=28.2
Q ss_pred HhhccCccEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCM-----PGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~-----~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....+|++|+|=-+ .-.+.-++++.|+ ......- +++|+..-++
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~---~rp~~~e-vIlTGr~~p~ 140 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLK---AKPEDLE-LVLTGRNAPK 140 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH---cCCCCCE-EEEECCCCCH
Confidence 3444579999998643 3355667888888 4444444 5555554443
No 121
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=71.98 E-value=14 Score=20.06 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=17.7
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+..+.++.++ ...+|+|.+|+.....
T Consensus 87 ~~i~~~~~ak-----~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 87 SLVTVAKKAK-----EIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHHH-----HCCCeEEEEECCCCCc
Confidence 3456666666 4568999999876543
No 122
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=71.88 E-value=14 Score=19.93 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=23.1
Q ss_pred CccEEEEeCCCCCCC---------H-------HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPGMT---------G-------CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~---------~-------~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+||+|++-+..-+.. . ..+++.++ ...+..++++++...
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~ii~~t~~~ 117 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLK---SLSPKTKVILITPPP 117 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHH---hhCCCCeEEEeCCCC
Confidence 699999855433321 1 12344455 334678888887653
No 123
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=71.46 E-value=17 Score=20.77 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=24.4
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|.+...+||+||........ +....++ . ...+|++.+...
T Consensus 68 E~i~~l~PDLIi~~~~~~~~---~~~~~l~---~-~~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPT---SIADDLQ---K-KTGIPVVVLDGG 107 (262)
T ss_pred HHHHhcCCCEEEEecCCccc---hhHHHHH---H-hhCCCEEEEecC
Confidence 67888899999987544322 2334443 1 134688777654
No 124
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=71.34 E-value=14 Score=19.81 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=21.6
Q ss_pred cCccEEEEeCCCCCCC-----HHH-------HHHHHHhhcCCCCCccEEEEeeC
Q 039883 33 LAVDLIITDYCMPGMT-----GCE-------LIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~-----~~~-------~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+||+|++.+..-+.. ..+ +++.++ .+..+|++++.+
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~-----~~~~~vil~~~~ 114 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLR-----AAGARVVVFTIP 114 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHH-----hCCCEEEEecCC
Confidence 4899999966554432 222 233333 456678888754
No 125
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=70.71 E-value=11 Score=23.28 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=26.5
Q ss_pred cCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 33 LAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
..+|+|++|...... .-.++++++| ...+..+||+
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik---~~~P~~~vIa 156 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAR---EAWPDKTICA 156 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHH---HhCCCCcEEE
Confidence 369999999988754 3467888888 5677777665
No 126
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.69 E-value=13 Score=20.06 Aligned_cols=40 Identities=8% Similarity=0.010 Sum_probs=23.6
Q ss_pred ccCccEEEEeCCCCCCC------HH-------HHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGMT------GC-------ELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~------~~-------~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+|++-+..-|.. .. .+++.++ ...+..++++++..
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~---~~~~~~~iil~t~~ 117 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQ---ALPSKPKIYICYPI 117 (188)
T ss_pred ccCCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHH---HHCCCCeEEEEeCC
Confidence 35799999877655432 11 2344444 34566677777653
No 127
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=70.68 E-value=19 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+....||-+++|...-..+...++..|+ .-...+..|++-...
T Consensus 32 Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~-a~~~~~~~pvVR~p~ 76 (255)
T COG3836 32 EILATAGFDWLLIDGEHAPNDLQSLLHQLQ-AVAAYASPPVVRPPV 76 (255)
T ss_pred HHHHhcCCCEEEecccccCccHHHHHHHHH-HhhccCCCCeeeCCC
Confidence 667777899999999999999999998888 444566677776554
No 128
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=70.09 E-value=20 Score=21.07 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=22.0
Q ss_pred ccEEEEeCC-------CCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 35 VDLIITDYC-------MPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 35 ~d~vi~d~~-------~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++++++|+. -+--...++++.++ ....++.++|+..
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~-----~~g~~~~~~Tnns 44 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLA-----RAGKAALFVTNNS 44 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHH-----HCCCeEEEEeCCC
Confidence 456677664 11112567788887 3456888888753
No 129
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=69.88 E-value=13 Score=18.75 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=21.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+++++..-......+.++.++ ....+++++|+..+.
T Consensus 64 ~i~iS~~g~~~~~~~~~~~a~-----~~g~~iv~iT~~~~~ 99 (139)
T cd05013 64 VIAISFSGETKETVEAAEIAK-----ERGAKVIAITDSANS 99 (139)
T ss_pred EEEEeCCCCCHHHHHHHHHHH-----HcCCeEEEEcCCCCC
Confidence 344454444444566666666 345789999987554
No 130
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.26 E-value=13 Score=19.93 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=25.4
Q ss_pred hhccCccEEEEeCCCCCC-----CHHH-------HHHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMPGM-----TGCE-------LIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-----~~~~-------~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+...+||+|++.+..-+. +..+ ++..++ ...+..+|++++.+
T Consensus 52 l~~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~---~~~~~~~iv~~~~~ 105 (189)
T cd01825 52 LAALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLR---QILPNASILLVGPP 105 (189)
T ss_pred HhhCCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEEcCC
Confidence 445689999987755432 2222 334444 34577888888754
No 131
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=68.70 E-value=19 Score=22.24 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=30.8
Q ss_pred HHhhccCccEEEE-----eCCCCCCCHHH-HHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 28 EEVHVLAVDLIIT-----DYCMPGMTGCE-LIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 28 ~~~~~~~~d~vi~-----d~~~~~~~~~~-~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+.+...++|+||+ |-.-|...... +.+.++ . -....+||+++.++.|..
T Consensus 34 ~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~-~-l~~~~Ipv~~I~GNHD~~ 88 (390)
T COG0420 34 EIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALR-R-LKDAGIPVVVIAGNHDSP 88 (390)
T ss_pred HHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHH-H-hccCCCcEEEecCCCCch
Confidence 3455668999987 44555555544 344444 1 124679999999987754
No 132
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=68.64 E-value=16 Score=22.39 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||..... .-+.+..|+ ...+|++.+..
T Consensus 113 E~Il~l~PDLVi~~~~~----~~~~~~~L~-----~~gi~V~~~~~ 149 (359)
T PRK09534 113 EAVVGLDPDLVLAPNAV----AGDTVTRLR-----EAGITVFHFPA 149 (359)
T ss_pred HHHhcCCCCEEEEcCCC----chHHHHHHH-----HCCCeEEEeCC
Confidence 67788899999985432 223566666 23467766643
No 133
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=67.81 E-value=10 Score=17.07 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=11.6
Q ss_pred HHHHHHhhcCCCCCccEEEEeeCC
Q 039883 52 LIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 52 ~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+.+.+| ..+...|++.+.+..
T Consensus 37 L~~~ik---~~F~~~P~i~V~nK~ 57 (58)
T PF06858_consen 37 LFKEIK---PLFPNKPVIVVLNKI 57 (58)
T ss_dssp HHHHHH---HHTTTS-EEEEE--T
T ss_pred HHHHHH---HHcCCCCEEEEEecc
Confidence 344455 567788888876543
No 134
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=66.90 E-value=13 Score=20.32 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=10.8
Q ss_pred CccEEEEeCCCCCC
Q 039883 34 AVDLIITDYCMPGM 47 (82)
Q Consensus 34 ~~d~vi~d~~~~~~ 47 (82)
+||+|++.+..-+.
T Consensus 68 ~~d~V~i~~G~ND~ 81 (204)
T cd04506 68 KADVITITIGGNDL 81 (204)
T ss_pred cCCEEEEEecchhH
Confidence 79999998766653
No 135
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=66.87 E-value=21 Score=20.28 Aligned_cols=46 Identities=22% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHhhccCccEEEEeC-----CCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 28 EEVHVLAVDLIITDY-----CMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~-----~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+++...++|+||+|- ...-.+-.+++..|+ ......- +++|+..-+
T Consensus 116 ~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~---~kP~~~~-vIiTGr~ap 166 (198)
T COG2109 116 EALADGKYDLVILDELNYALRYGLLPLEEVVALLK---ARPEHTH-VIITGRGAP 166 (198)
T ss_pred HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh---cCCCCcE-EEEECCCCC
Confidence 345555799999985 334566777888888 4444444 555554433
No 136
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=66.66 E-value=16 Score=21.82 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=26.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
...||.|++|...|.. ..+.++... ...+|+++-|...+.+.
T Consensus 66 ~~~~d~VvIDFT~P~~-~~~n~~~~~-----~~gv~~ViGTTG~~~~~ 107 (275)
T TIGR02130 66 AKYPELICIDYTHPSA-VNDNAAFYG-----KHGIPFVMGTTGGDREA 107 (275)
T ss_pred hhcCCEEEEECCChHH-HHHHHHHHH-----HCCCCEEEcCCCCCHHH
Confidence 3348989999999983 355555554 33456666665544443
No 137
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=66.20 E-value=21 Score=21.91 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHhhccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||...... ...+.+....+. ...+|++++.
T Consensus 115 E~Ilal~PDLVi~~~~~~~~~~~~~~~~~L~-----~~Gipvv~~~ 155 (374)
T PRK14048 115 ETILTLKADLAILANWQADTEAGQRAIEYLE-----SIGVPVIVVD 155 (374)
T ss_pred HHHhhcCCCEEEecCcccccccchhHHHHHH-----HCCCCEEEEe
Confidence 677888999999754322 223345566665 2346777775
No 138
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=65.90 E-value=24 Score=20.69 Aligned_cols=45 Identities=11% Similarity=-0.139 Sum_probs=23.8
Q ss_pred hhccCccEEEEeCCCCC----CCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPG----MTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~----~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+||+|++-=.+-+ .+..++.+.++ ......|+.++.++.+.
T Consensus 76 i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~---~L~~~~pv~~V~GNHD~ 124 (271)
T PRK11340 76 GIEQKPDLILLGGDYVLFDMPLNFSAFSDVLS---PLAECAPTFACFGNHDR 124 (271)
T ss_pred HHhcCCCEEEEccCcCCCCccccHHHHHHHHH---HHhhcCCEEEecCCCCc
Confidence 34458999888333332 22233444444 11223578888877664
No 139
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=65.86 E-value=19 Score=19.19 Aligned_cols=37 Identities=19% Similarity=0.480 Sum_probs=22.7
Q ss_pred ccEEEEeCCCCCC------CH-------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 35 VDLIITDYCMPGM------TG-------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 35 ~d~vi~d~~~~~~------~~-------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
||+|++....-+. +. ..+++.++ ...+..++++++..
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~li~~i~---~~~p~~~i~~~~~~ 105 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELR---KRYPDAPIVLMLGP 105 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEEecC
Confidence 9999987765543 12 22345555 45667777777644
No 140
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=65.54 E-value=17 Score=22.56 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=25.8
Q ss_pred CccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEE
Q 039883 34 AVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 34 ~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
.+|+|++|...... .-++.++++| ..++..+||.-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir---~~~p~~~viaG 156 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVR---EAFPEHTIMAG 156 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHH---hhCCCCeEEEe
Confidence 49999999988754 4477889998 56666665543
No 141
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=65.31 E-value=20 Score=19.42 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=23.5
Q ss_pred ccE-EEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 35 VDL-IITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 35 ~d~-vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
-|+ |++...-...+..+.++..+ ...+++|.+|+....
T Consensus 102 ~Dv~I~iS~SG~t~~~i~~~~~ak-----~~Ga~vI~IT~~~~s 140 (177)
T cd05006 102 GDVLIGISTSGNSPNVLKALEAAK-----ERGMKTIALTGRDGG 140 (177)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH-----HCCCEEEEEeCCCCC
Confidence 344 34444444445666777777 445899999987544
No 142
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.16 E-value=15 Score=23.69 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=26.7
Q ss_pred hhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 30 VHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
+...+||+|.+....+.. ...++++.+| ...+.++||+--
T Consensus 59 l~~~~pdvVgis~~t~~~~~a~~~~~~~k---~~~P~~~iV~GG 99 (497)
T TIGR02026 59 LRAHCPDLVLITAITPAIYIACETLKFAR---ERLPNAIIVLGG 99 (497)
T ss_pred HHhcCcCEEEEecCcccHHHHHHHHHHHH---HHCCCCEEEEcC
Confidence 455689999997765543 3456777777 556777666653
No 143
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=64.68 E-value=16 Score=22.69 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=27.0
Q ss_pred HhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEE
Q 039883 29 EVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
.+.....|++++|...... .-.+.++.+| ...++++||+-
T Consensus 115 ~L~~agvD~ivID~a~g~s~~~~~~ik~ik---~~~~~~~viaG 155 (352)
T PF00478_consen 115 ALVEAGVDVIVIDSAHGHSEHVIDMIKKIK---KKFPDVPVIAG 155 (352)
T ss_dssp HHHHTT-SEEEEE-SSTTSHHHHHHHHHHH---HHSTTSEEEEE
T ss_pred HHHHcCCCEEEccccCccHHHHHHHHHHHH---HhCCCceEEec
Confidence 4444579999999877543 4567888888 55667888764
No 144
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=64.62 E-value=6.2 Score=20.24 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=19.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+| |++|...|+ ...+.++... ...+|+|+-|...+.+
T Consensus 68 ~D-VvIDfT~p~-~~~~~~~~~~-----~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 68 AD-VVIDFTNPD-AVYDNLEYAL-----KHGVPLVIGTTGFSDE 104 (124)
T ss_dssp -S-EEEEES-HH-HHHHHHHHHH-----HHT-EEEEE-SSSHHH
T ss_pred CC-EEEEcCChH-HhHHHHHHHH-----hCCCCEEEECCCCCHH
Confidence 77 677888765 3345555554 2256777766555443
No 145
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=64.27 E-value=20 Score=18.99 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=29.1
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCCC--HHHHHHHHH
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGMT--GCELIKKIK 57 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~~--~~~~~~~l~ 57 (82)
.+...+|++..-+. ++...+.||+|-+...+...- --++.+.++
T Consensus 24 ~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 24 AFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCD 77 (134)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHH
Confidence 44568888876533 455667899999988775432 234556666
No 146
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=63.48 E-value=24 Score=19.59 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=28.8
Q ss_pred HhhccCccEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCM-----PGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~-----~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+....+|+||+|=-+ .-.+--++++.|+ ...+.+ =+++|+..-++
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~---~rp~~~-evVlTGR~~p~ 142 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYGYLDVEEVVEALQ---ERPGHQ-HVIITGRGCPQ 142 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH---hCCCCC-EEEEECCCCCH
Confidence 4445579999998644 3455667888887 334444 45566655443
No 147
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=63.02 E-value=21 Score=18.91 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=20.6
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
++...+|+||+|. ++.. ......+. .....+++++..
T Consensus 87 ~~~~~~D~iiIDt--aG~~-~~~~~~~~-----~Ad~~ivv~tpe 123 (148)
T cd03114 87 LDAAGFDVIIVET--VGVG-QSEVDIAS-----MADTTVVVMAPG 123 (148)
T ss_pred HHhcCCCEEEEEC--CccC-hhhhhHHH-----hCCEEEEEECCC
Confidence 3344799999999 5544 33334444 333445555543
No 148
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=62.85 E-value=30 Score=20.57 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=31.3
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+++....+|.|++|......+-.++...++ ........|++-+..
T Consensus 33 E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~-a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 33 EIAATSGYDWLLIDGEHAPNTIQDLYHQLQ-AIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHcCCCEEEEccccCCCCHHHHHHHHH-HHHhcCCCeEEECCC
Confidence 666777899999999999988877777666 222333445555443
No 149
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=62.70 E-value=26 Score=19.79 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=30.2
Q ss_pred HHhhccCccEEEEeCCCC-----CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 28 EEVHVLAVDLIITDYCMP-----GMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+.+....+|+||+|=-+. -.+--++++.|+ .....+ =+++|+..-++.
T Consensus 109 ~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~---~rp~~~-evVlTGR~~p~~ 161 (191)
T PRK05986 109 RMLADESYDLVVLDELTYALKYGYLDVEEVLEALN---ARPGMQ-HVVITGRGAPRE 161 (191)
T ss_pred HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH---cCCCCC-EEEEECCCCCHH
Confidence 344555799999986443 345777888888 334343 466676655443
No 150
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=62.24 E-value=28 Score=19.94 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=22.9
Q ss_pred CccEEEEeCCC-------CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 34 AVDLIITDYCM-------PGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 34 ~~d~vi~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.++.+++|+.- +--...+++++++ ....++.++|+...
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~-----~~G~~~~ivTN~~~ 51 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKII-----AQGKPVYFVSNSPR 51 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHH-----HCCCEEEEEeCCCC
Confidence 46677777722 2223566777777 33567777776543
No 151
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=61.89 E-value=20 Score=18.15 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 47 MTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+-.+.++..+ ....|+|.+|+..+..
T Consensus 61 ~~~~~~~~~a~-----~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 61 KETVAAAKFAK-----EKGATVIGLTDDEDSP 87 (120)
T ss_pred hHHHHHHHHHH-----HcCCeEEEEECCCCCc
Confidence 34566666666 3457999999876543
No 152
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.75 E-value=24 Score=19.05 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=23.0
Q ss_pred ccCccEEEEeCCCCCC----CH-------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGM----TG-------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~----~~-------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+|++-+..-+. +. .++++.++ ...+..+|++++.+
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~---~~~~~~~iiv~~~p 115 (191)
T cd01836 65 ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALR---AKFPGARVVVTAVP 115 (191)
T ss_pred cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHH---hhCCCCEEEEECCC
Confidence 4589999884433221 11 22444555 34577888888743
No 153
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=61.70 E-value=18 Score=20.17 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=23.2
Q ss_pred ccCccEEEEeCCCCCC----CHHH-------HHHHHHhhcCCCCCccEEEEee
Q 039883 32 VLAVDLIITDYCMPGM----TGCE-------LIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~----~~~~-------~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
..+|++|++.+..-+. +..+ +++.++ ...+..+|++++.
T Consensus 87 ~~~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~---~~~P~~~Iil~~~ 136 (214)
T cd01820 87 GVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIR---EKLPNAKILLLGL 136 (214)
T ss_pred CCCCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEEec
Confidence 3469998886655442 2222 344455 4566778888774
No 154
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=61.12 E-value=20 Score=17.97 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=21.7
Q ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-|++|. +..++. +-.+.++..+ ....++|.+|+..+..
T Consensus 46 ~~d~~I~-iS~sG~t~e~~~~~~~a~-----~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 46 EDTLVIA-ISQSGETADTLAALRLAK-----EKGAKTVAITNVVGST 86 (126)
T ss_pred CCcEEEE-EeCCcCCHHHHHHHHHHH-----HcCCeEEEEECCCCCh
Confidence 3455444 333443 3344555555 4457999999875543
No 155
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.04 E-value=35 Score=22.27 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+++.....|+|.+|...... .-+++++++| ..++..++|+
T Consensus 254 ~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik---~~~p~~~vi~ 294 (505)
T PLN02274 254 EHLVKAGVDVVVLDSSQGDSIYQLEMIKYIK---KTYPELDVIG 294 (505)
T ss_pred HHHHHcCCCEEEEeCCCCCcHHHHHHHHHHH---HhCCCCcEEE
Confidence 34455579999999964321 2247899998 5566777765
No 156
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=61.01 E-value=27 Score=19.49 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=29.6
Q ss_pred HhhccCccEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 29 EVHVLAVDLIITDYCM-----PGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~-----~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+....+|++|+|=-+ .-.+--+++..|+ .....+ =+++|+..-++.
T Consensus 110 ~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~---~rp~~~-evILTGR~~p~~ 161 (178)
T PRK07414 110 VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLE---KRPSHV-DVILTGPEMPES 161 (178)
T ss_pred HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHH---hCCCCC-EEEEECCCCCHH
Confidence 3445579999998643 3456777888888 333333 466676655443
No 157
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=60.35 E-value=19 Score=20.37 Aligned_cols=16 Identities=38% Similarity=0.264 Sum_probs=12.8
Q ss_pred HHhhccCccEEEEeCC
Q 039883 28 EEVHVLAVDLIITDYC 43 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~ 43 (82)
|.+...+||+||....
T Consensus 51 E~i~~l~PDlIi~~~~ 66 (245)
T cd01144 51 ERVLALKPDLVIAWDD 66 (245)
T ss_pred HHHHhCCCCEEEEecC
Confidence 6788889999988543
No 158
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=60.33 E-value=32 Score=22.84 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++++..+|.++|=-...++.-..+.++... ....++-|..+|.+..
T Consensus 383 e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma---~~~erPiIFalSNPT~ 428 (582)
T KOG1257|consen 383 EAVKEVKPTVLIGASGVGGAFTEEVLRAMA---KSNERPIIFALSNPTS 428 (582)
T ss_pred HHHHhcCCcEEEecccCCccCCHHHHHHHH---hcCCCceEEecCCCcc
Confidence 667788999999888999988889999887 4555555666666543
No 159
>PLN02645 phosphoglycolate phosphatase
Probab=60.27 E-value=35 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=25.6
Q ss_pred CccEEEEeCC-------CCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYC-------MPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~-------~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+++++++|+. .+--...++++.++ ....+++++|+..
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr-----~~g~~~~~~TN~~ 70 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLR-----SMGKKLVFVTNNS 70 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHH-----HCCCEEEEEeCCC
Confidence 5888888862 22223577888888 3467889998765
No 160
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=59.26 E-value=16 Score=19.84 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=24.3
Q ss_pred CccEEEEeCCC-CCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 34 AVDLIITDYCM-PGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 34 ~~d~vi~d~~~-~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+|+||||-.. .|-..+.+...+++ ........+|++|+.
T Consensus 95 ~yd~II~DEcH~~Dp~sIA~rg~l~~-~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 95 NYDVIIMDECHFTDPTSIAARGYLRE-LAESGEAKVIFMTAT 135 (148)
T ss_dssp S-SEEEECTTT--SHHHHHHHHHHHH-HHHTTS-EEEEEESS
T ss_pred CccEEEEeccccCCHHHHhhheeHHH-hhhccCeeEEEEeCC
Confidence 59999998755 45555666666662 223445678888865
No 161
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.81 E-value=24 Score=18.61 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=24.5
Q ss_pred ccCccEEEEeCCCCC----CCHHHH-------HHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCMPG----MTGCEL-------IKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~----~~~~~~-------~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..+||+|++.+..-+ .+..++ ++.++ ...+..+|++++...
T Consensus 46 ~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~---~~~~~~~vi~~~~~p 97 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLR---KHFPNIKIVVQSILP 97 (169)
T ss_pred ccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEEecCC
Confidence 458999999655443 223333 34444 335778888887643
No 162
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=58.67 E-value=20 Score=21.43 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
..++..+||+||.|..... .. .. ....+|+|.+..
T Consensus 87 ~~l~~~~pDlVi~d~~~~~---~~---aA-----~~~~iP~i~i~~ 121 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYST---VV---AA-----KLLKIPVICISN 121 (321)
T ss_pred HHHHhcCCCEEEECCchHH---HH---HH-----HhcCCCEEEEec
Confidence 4566778999999954433 11 11 244578887664
No 163
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=58.15 E-value=28 Score=20.68 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=27.4
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+....||++|+=.=.+...|-.-.+.+- ....+|.|+++...
T Consensus 55 ~~~~~pdf~I~isPN~~~PGP~~ARE~l----~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 55 LKEWDPDFVIVISPNAAAPGPTKAREML----SAKGIPCIVISDAP 96 (276)
T ss_dssp HHHH--SEEEEE-S-TTSHHHHHHHHHH----HHSSS-EEEEEEGG
T ss_pred HHhhCCCEEEEECCCCCCCCcHHHHHHH----HhCCCCEEEEcCCC
Confidence 4466899988877777778877777765 35678999999753
No 164
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=57.31 E-value=37 Score=22.02 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.2
Q ss_pred hhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 30 VHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+.....|.|.+|...+.. .-.+++++++ ...+.+|||+
T Consensus 233 Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~---~~~~~~~vi~ 271 (475)
T TIGR01303 233 LLDAGVDVLVIDTAHGHQVKMISAIKAVR---ALDLGVPIVA 271 (475)
T ss_pred HHHhCCCEEEEeCCCCCcHHHHHHHHHHH---HHCCCCeEEE
Confidence 444579999999998533 3355778888 5567788887
No 165
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=56.53 E-value=28 Score=22.90 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=24.5
Q ss_pred CccEEEEeC--CCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDY--CMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~--~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+||++|+|= +.-|..++..+...- ...+. .+|++|-
T Consensus 171 ~pDlLLLDEPTNHLD~~~i~WLe~~L---~~~~g-tviiVSH 208 (530)
T COG0488 171 EPDLLLLDEPTNHLDLESIEWLEDYL---KRYPG-TVIVVSH 208 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHH---HhCCC-cEEEEeC
Confidence 799999995 666777777665443 23444 6777774
No 166
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=56.35 E-value=29 Score=21.09 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=29.1
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
-+-..+||+||.+-.+... +.+..|| ...++++.+..+.+.+.
T Consensus 94 GILslkPdlvi~~~~aGP~---~vl~qLr-----aagV~vv~v~~~~~~~~ 136 (300)
T COG4558 94 GILSLKPDLVIGSEGAGPA---TVLDQLR-----AAGVPVVTVPEQPTLDG 136 (300)
T ss_pred cceecCCCEEEeecccCcH---HHHHHHH-----HcCCcEEEcCCCCCHHH
Confidence 3445589999988776553 5667777 44578888876655443
No 167
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=56.28 E-value=36 Score=19.42 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=27.0
Q ss_pred hhccCccEEEEeCCCCC--CCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPG--MTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~--~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...++|+|++-=.+.+ .....+++.++ . ....|+.++.++.+.
T Consensus 28 ~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~---~-~~~~pv~~v~GNHD~ 73 (239)
T TIGR03729 28 LKKQKIDHLHIAGDISNDFQRSLPFIEKLQ---E-LKGIKVTFNAGNHDM 73 (239)
T ss_pred HHhcCCCEEEECCccccchhhHHHHHHHHH---H-hcCCcEEEECCCCCC
Confidence 34457998888444433 23455666666 2 245788888877663
No 168
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=56.22 E-value=32 Score=18.70 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
-.+.++..+ ....++|.+|+.....
T Consensus 91 ~i~~~~~ak-----~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 91 VVNAAEKAK-----KAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHHH-----HCCCeEEEEECCCCCc
Confidence 345556555 4468999999865543
No 169
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=56.03 E-value=36 Score=20.34 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=22.9
Q ss_pred ccEEEEeCCCCC--CCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLIITDYCMPG--MTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi~d~~~~~--~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
-|++|+ +..++ .+-.+.++..+ ...+|+|.+|+..+..
T Consensus 90 ~d~~i~-iS~sG~t~~~~~~~~~ak-----~~g~~vI~iT~~~~s~ 129 (321)
T PRK11543 90 RDVMLF-ISYSGGAKELDLIIPRLE-----DKSIALLAMTGKPTSP 129 (321)
T ss_pred CCEEEE-EeCCCCcHHHHHHHHHHH-----HcCCeEEEEECCCCCh
Confidence 455444 33333 33455666666 4468999999876554
No 170
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=56.03 E-value=34 Score=18.97 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=24.7
Q ss_pred hhccCccEEEEeC-----CCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 30 VHVLAVDLIITDY-----CMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 30 ~~~~~~d~vi~d~-----~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+....+|+||+|= ...-.+--+++..|+ ..... -=+++|+..-++.
T Consensus 92 i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~---~rp~~-~evVlTGR~~~~~ 142 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLE---NRPES-LEVVLTGRNAPEE 142 (172)
T ss_dssp TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHH---TS-TT--EEEEE-SS--HH
T ss_pred HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHH---cCCCC-eEEEEECCCCCHH
Confidence 4445799999985 334456777888888 33444 4466676655543
No 171
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=55.87 E-value=30 Score=18.34 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=22.9
Q ss_pred hccCccEEEEeCCCCCC----CHHH-------HHHHHHhhcCCCCCccEEEEeeC
Q 039883 31 HVLAVDLIITDYCMPGM----TGCE-------LIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~~~----~~~~-------~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
...+||+|++-+..-+. +..+ +++.++ ...+.+++++++.+
T Consensus 48 ~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~---~~~p~~~vi~~~~~ 99 (174)
T cd01841 48 IQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIR---EEFPNTKIYLLSVL 99 (174)
T ss_pred HhcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHH---HHCCCCEEEEEeeC
Confidence 34579988886544432 2222 333444 33467778887743
No 172
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=55.83 E-value=29 Score=20.85 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.5
Q ss_pred ccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 35 VDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 35 ~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
-=.++.|..||.. .|+.+.+..+ ...++|+.+.+++.
T Consensus 79 ~valVSDAG~P~ISDPG~~LV~~a~-----~~gi~V~~lPG~sA 117 (275)
T COG0313 79 SVALVSDAGTPLISDPGYELVRAAR-----EAGIRVVPLPGPSA 117 (275)
T ss_pred eEEEEecCCCCcccCccHHHHHHHH-----HcCCcEEecCCccH
Confidence 4468899999965 5899999888 34478888877654
No 173
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=55.77 E-value=30 Score=21.85 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=27.9
Q ss_pred HHhhccCccEEEEeCCCCCCCH--HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTG--CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~--~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++++..+||++|+|..--+.-+ ..++..++ .+. ..+++.+++-.
T Consensus 100 ~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~---~~~-t~~vL~lr~i~ 145 (400)
T COG4671 100 STAETFKPDIFIVDKFPFGLRFELLPTLEYLK---TTG-TRLVLGLRSIR 145 (400)
T ss_pred HHHHhcCCCEEEEeccccchhhhhhHHHHHHh---hcC-CcceeehHhhh
Confidence 3455668999999998777432 34566666 223 45667766543
No 174
>PRK13938 phosphoheptose isomerase; Provisional
Probab=55.41 E-value=36 Score=19.17 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-.+.++..+ ....++|.+|+..+..
T Consensus 128 ~vi~a~~~Ak-----~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 128 SVLRAAKTAR-----ELGVTVVAMTGESGGQ 153 (196)
T ss_pred HHHHHHHHHH-----HCCCEEEEEeCCCCCh
Confidence 3455555555 4568999999876543
No 175
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.66 E-value=42 Score=19.61 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+.++...||.|+.=.-.|...|-.-.+.+- .....|.|+++...
T Consensus 54 ~~~e~~~pDfvi~isPNpaaPGP~kARE~l----~~s~~PaiiigDaP 97 (277)
T COG1927 54 EMLEEFNPDFVIYISPNPAAPGPKKAREIL----SDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCchHHHHHH----hhcCCCEEEecCCc
Confidence 456666899999888788888877777776 34567888887653
No 176
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=54.64 E-value=48 Score=20.34 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=23.9
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+.++..+||+|++..-++..-...++..++ . .....+|++.+
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~-~-~~~~~~p~~~~ 135 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQG-K-ELGKKIPFTTV 135 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHh-h-ccCCCCCEEEE
Confidence 356667899999964343333345566554 1 12445676644
No 177
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=54.47 E-value=44 Score=21.37 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=27.5
Q ss_pred hhccCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEE
Q 039883 30 VHVLAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+....+|+|.+|..... ....+.+++++ ...+.+||++
T Consensus 232 L~~aG~d~I~vd~a~g~~~~~~~~i~~i~---~~~~~~~vi~ 270 (450)
T TIGR01302 232 LVKAGVDVIVIDSSHGHSIYVIDSIKEIK---KTYPDLDIIA 270 (450)
T ss_pred HHHhCCCEEEEECCCCcHhHHHHHHHHHH---HhCCCCCEEE
Confidence 34446999999997653 34567788888 5567888887
No 178
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=54.44 E-value=41 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=31.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
|.++|..-..|+...-.++++|. ...+.+|+.+++...
T Consensus 236 ~cILITgKGyPD~aTR~fL~~L~---~~~p~lPv~~LvD~D 273 (384)
T PLN00060 236 PCILITAKGYPDLATRFILHRLS---QTFPNLPILALVDWN 273 (384)
T ss_pred CEEEEecCCCCCHHHHHHHHHHH---HhcCCCCEEEEECCC
Confidence 56788888999999999999998 455689999998754
No 179
>PRK13937 phosphoheptose isomerase; Provisional
Probab=54.20 E-value=36 Score=18.80 Aligned_cols=26 Identities=8% Similarity=-0.053 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 47 MTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.+-.+.++..+ ...+++|.+|+..+.
T Consensus 120 ~~~~~~~~~ak-----~~g~~~I~iT~~~~s 145 (188)
T PRK13937 120 PNVLAALEKAR-----ELGMKTIGLTGRDGG 145 (188)
T ss_pred HHHHHHHHHHH-----HCCCeEEEEeCCCCC
Confidence 34455666666 446899999987554
No 180
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=53.99 E-value=33 Score=18.25 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=17.1
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-.+.++..+ ...+++|.+|+..+..
T Consensus 94 ~~~~~~~~a~-----~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 94 NVLKAIEAAK-----DKGMKTITLAGKDGGK 119 (154)
T ss_pred HHHHHHHHHH-----HCCCEEEEEeCCCCCc
Confidence 3455566666 4468999999875543
No 181
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=53.83 E-value=39 Score=19.05 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=22.3
Q ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-|++|. +..++. +-.+.++..| ....|+|.+|+..+..
T Consensus 109 ~gDvli~-iS~SG~s~~v~~a~~~Ak-----~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 109 AGDVLLA-ISTRGNSRDIVKAVEAAV-----TRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCEEEE-EeCCCCCHHHHHHHHHHH-----HCCCEEEEEeCCCCCh
Confidence 3455544 333332 3344555555 5578999999876543
No 182
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=53.77 E-value=32 Score=20.10 Aligned_cols=39 Identities=13% Similarity=-0.031 Sum_probs=22.2
Q ss_pred CccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-|++| =+..++.+ ..+.++..+ ...+++|++|+.....
T Consensus 175 ~~Dv~I-~iS~sg~~~~~~~~~~~ak-----~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 175 PDDLLL-AISYSGERRELNLAADEAL-----RVGAKVLAITGFTPNA 215 (278)
T ss_pred CCCEEE-EEcCCCCCHHHHHHHHHHH-----HcCCCEEEEcCCCCCc
Confidence 455433 33344433 345555555 5668999999875543
No 183
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=53.55 E-value=9.9 Score=18.68 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=19.5
Q ss_pred CccEEEEeCCCCCCCHHH----HHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPGMTGCE----LIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~----~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..|++++=+.+.+...++ ++.+++........+|+|++....
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~ 118 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKS 118 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-T
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEecc
Confidence 456544433333333333 233444221234568988887653
No 184
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.48 E-value=32 Score=18.01 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHhcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHH
Q 039883 12 LMSDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIK 57 (82)
Q Consensus 12 ~~~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~ 57 (82)
...+...||++...+. ++.....+|+|.+...+... ..-++++.++
T Consensus 23 ~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~ 78 (132)
T TIGR00640 23 ATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 78 (132)
T ss_pred HHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHH
Confidence 3345567888876543 45556689999987777532 2234566676
No 185
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=52.65 E-value=27 Score=20.70 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=29.3
Q ss_pred ChhHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 25 ~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+..++++..+|+++|=-..-++.-..+.++... ....++-|..+|.+..
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma---~~~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMA---KHNERPIIFPLSNPTP 145 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCH---HHSSSEEEEE-SSSCG
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHh---ccCCCCEEEECCCCCC
Confidence 334778888999988777688887788888776 2333433444555443
No 186
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=52.17 E-value=24 Score=22.44 Aligned_cols=39 Identities=8% Similarity=0.205 Sum_probs=28.9
Q ss_pred ccEEEE-eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 35 VDLIIT-DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 35 ~d~vi~-d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
|.++++ +.+|-|+..+.|+.+.- ...-.|+|+++.+...
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAl----Ese~aPIii~AtNRG~ 331 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRAL----ESELAPIIILATNRGM 331 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHh----hcccCcEEEEEcCCce
Confidence 777666 57889999999887765 3456788988876543
No 187
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=51.41 E-value=21 Score=20.23 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=24.8
Q ss_pred ccCccEEEEeCCC----CC--CCHH----HHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCM----PG--MTGC----ELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~----~~--~~~~----~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..++++|++|.-. +. .+-. .+.+.|+ .-.....+++++++..
T Consensus 121 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~-~la~~~~~~ii~~~q~ 172 (242)
T cd00984 121 EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLK-LLAKELNVPVIALSQL 172 (242)
T ss_pred hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHH-HHHHHhCCeEEEeccc
Confidence 3479999999743 21 1111 3445555 3234567888888854
No 188
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=51.05 E-value=46 Score=19.02 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=23.1
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||.....+. +....++ . . .|++++..
T Consensus 59 E~i~~l~PDlii~~~~~~~----~~~~~l~---~-~--~p~v~~~~ 94 (256)
T cd01146 59 EAIAALKPDLILGSASRHD----EIYDQLS---Q-I--APTVLLDS 94 (256)
T ss_pred HHHHhcCCCEEEeecccch----hHHHHHH---h-h--CCEEEecC
Confidence 6788889999998765443 4555565 2 1 36665543
No 189
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=50.90 E-value=42 Score=21.22 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=24.3
Q ss_pred hhccCccEEEE-----eCCCCCCCHH----HHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIIT-----DYCMPGMTGC----ELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~-----d~~~~~~~~~----~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+||+||+ |...|..... +++..++ ....|++++.++.+.
T Consensus 35 i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~-----~~~~~v~~I~GNHD~ 86 (407)
T PRK10966 35 VQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ-----QTGCQLVVLAGNHDS 86 (407)
T ss_pred HHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH-----hcCCcEEEEcCCCCC
Confidence 44568999988 3322221111 2334444 224689999888764
No 190
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=50.42 E-value=41 Score=18.33 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=9.9
Q ss_pred CccEEEEeCCCCC
Q 039883 34 AVDLIITDYCMPG 46 (82)
Q Consensus 34 ~~d~vi~d~~~~~ 46 (82)
+||+|++.+..-+
T Consensus 65 ~pdlVii~~G~ND 77 (198)
T cd01821 65 PGDYVLIQFGHND 77 (198)
T ss_pred CCCEEEEECCCCC
Confidence 6999999776544
No 191
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.17 E-value=43 Score=18.44 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=22.2
Q ss_pred cCccEEEEeCCCCCC------CHHH-------HHHHHHhhcCCC-----CCccEEEEeeC
Q 039883 33 LAVDLIITDYCMPGM------TGCE-------LIKKIKLQSFTF-----REIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~------~~~~-------~~~~l~~~~~~~-----~~~~vi~ls~~ 74 (82)
.+||+|++-+..-|. +..+ ++..++ ... +..+|++++.+
T Consensus 78 ~~pd~vii~lGtND~~~~~~~~~~~~~~~l~~lv~~i~---~~~~~~~~~~~~iil~~pp 134 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSYFNLSAAEIAQGLGALVDIIR---TAPIEPGMPAPKILIVAPP 134 (208)
T ss_pred CCCCEEEEeccccccccccCCCHHHHHHHHHHHHHHHH---hccccccCCCCCEEEEeCC
Confidence 589999984433331 2222 344444 222 67788888764
No 192
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=49.94 E-value=1e+02 Score=22.90 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=39.8
Q ss_pred HHhcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC-C-HHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 12 LMSDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM-T-GCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 12 ~~~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~-~-~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
...+...||++..-+. +++...+||+|-+...+... . -.++++.++ .....+||++--+.
T Consensus 772 ~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~---~~g~~v~v~vGGa~ 841 (1229)
T PRK09490 772 GVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGLSGLITPSLDEMVHVAKEME---RQGFTIPLLIGGAT 841 (1229)
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHH---hcCCCCeEEEEeec
Confidence 3345567888866543 56667799999998877642 2 244677777 44567777776544
No 193
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.51 E-value=44 Score=21.72 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=27.9
Q ss_pred hhccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEE
Q 039883 30 VHVLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+.....++|.+|.... ...-.++++++| ...+..++|+
T Consensus 235 Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik---~~~p~~~v~a 273 (479)
T PRK07807 235 LLEAGVDVLVVDTAHGHQEKMLEALRAVR---ALDPGVPIVA 273 (479)
T ss_pred HHHhCCCEEEEeccCCccHHHHHHHHHHH---HHCCCCeEEe
Confidence 3344699999998775 455677889998 5677777776
No 194
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.95 E-value=47 Score=18.53 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=22.6
Q ss_pred ccEEEE-eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLIIT-DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi~-d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
-|++|. ...-...+..+.++..+ ....|+|.+|+..+..
T Consensus 112 ~Dv~I~iS~SG~t~~~i~~~~~ak-----~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 112 GDVLLGISTSGNSGNIIKAIEAAR-----AKGMKVITLTGKDGGK 151 (192)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH-----HCCCeEEEEeCCCCCh
Confidence 455443 33222334456666666 4468999999875543
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=48.14 E-value=23 Score=22.39 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=26.2
Q ss_pred ccEEEE-eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 35 VDLIIT-DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 35 ~d~vi~-d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|-++++ +++|-+...+.++.+.- .....|+|+++.+..
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnral----Es~~sPiiIlATNRg 317 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRAL----ESELSPIIILATNRG 317 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHH----TSTT--EEEEEES-S
T ss_pred cceEEecchhhccHHHHHHHHHHh----cCCCCcEEEEecCce
Confidence 777776 56889999999988877 355678888877644
No 196
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=48.02 E-value=43 Score=17.86 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=24.3
Q ss_pred hhccCccEEEEeCCCCC--CC-HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPG--MT-GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~--~~-~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+||+||+-=.+.. .. ....+..++ ....|+.++.++.+.
T Consensus 19 ~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~-----~~~~p~~~v~GNHD~ 64 (188)
T cd07392 19 LKAEEADAVIVAGDITNFGGKEAAVEINLLL-----AIGVPVLAVPGNCDT 64 (188)
T ss_pred hhccCCCEEEECCCccCcCCHHHHHHHHHHH-----hcCCCEEEEcCCCCC
Confidence 34557999888444432 22 233444444 234678888777654
No 197
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=47.88 E-value=54 Score=18.95 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=20.3
Q ss_pred EeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 40 TDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 40 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...-...+-.+.++..+ ...+++|.+|+....
T Consensus 54 iS~sG~t~~~~~~~~~a~-----~~g~~ii~iT~~~~s 86 (268)
T TIGR00393 54 ISYSGESLELLNLIPHLK-----RLSHKIIAFTGSPNS 86 (268)
T ss_pred EeCCCCCHHHHHHHHHHH-----HcCCcEEEEECCCCC
Confidence 333333344556666666 446899999986544
No 198
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=47.66 E-value=58 Score=19.22 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=22.5
Q ss_pred CccEEEE-eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIIT-DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~-d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-|++|+ ...-......+.++..+ ...+++|.+|+..+..
T Consensus 187 ~~Dl~I~iS~sG~t~~~~~~~~~ak-----~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 187 EGDVVLVVSHSGRTSDVIEAVELAK-----KNGAKIICITNSYHSP 227 (292)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH-----HCCCeEEEEeCCCCCh
Confidence 3455433 33322334455566666 4458999999876543
No 199
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=47.60 E-value=46 Score=19.29 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=23.1
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||..... ...+....++ ...+|++.+.
T Consensus 66 E~il~l~PDlVi~~~~~---~~~~~~~~L~-----~~gi~v~~~~ 102 (260)
T PRK03379 66 ERIVALKPDLVLAWRGG---NAERQVDQLA-----SLGIKVMWVD 102 (260)
T ss_pred HHHHhcCCCEEEEecCC---CcHHHHHHHH-----HCCCCEEEeC
Confidence 67888899999874321 1234555555 3346777774
No 200
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=47.49 E-value=73 Score=20.65 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=26.8
Q ss_pred HhhccCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEE
Q 039883 29 EVHVLAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
.+.....+++.+|..... ....+.+++++ ...+.+|+|+
T Consensus 235 ~L~~agvdvivvD~a~g~~~~vl~~i~~i~---~~~p~~~vi~ 274 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHGHSEGVLDRVREIK---AKYPDVQIIA 274 (486)
T ss_pred HHHHhCCCEEEEECCCCcchhHHHHHHHHH---hhCCCCCEEE
Confidence 444557899999986443 34566788888 5566778776
No 201
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.35 E-value=1.1e+02 Score=22.54 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=39.2
Q ss_pred HhcCCCceeeecChh--------HHhhccCccEEEEeCCCCC-CCH-HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 13 MSDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPG-MTG-CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 13 ~~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~-~~~-~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..+...||++..-+. +++...+||+|-+...|.. +.. .++++.++ .....+||++--+..
T Consensus 754 ~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~---~~g~~v~v~vGGa~~ 823 (1178)
T TIGR02082 754 VVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMN---RRGITIPLLIGGAAT 823 (1178)
T ss_pred HHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHH---hcCCCceEEEecccc
Confidence 345567888866443 5666779999999887754 222 44677777 445567777665443
No 202
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=47.21 E-value=59 Score=21.08 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred hhccCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEE
Q 039883 30 VHVLAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+.....|+|++|..-.. ..-+++++++| ...|+..||.
T Consensus 259 l~~aGvdvviLDSSqGnS~~qiemik~iK---~~yP~l~Via 297 (503)
T KOG2550|consen 259 LVQAGVDVVILDSSQGNSIYQLEMIKYIK---ETYPDLQIIA 297 (503)
T ss_pred hhhcCCcEEEEecCCCcchhHHHHHHHHH---hhCCCceeec
Confidence 33447999999987654 23466889999 6788887774
No 203
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.04 E-value=36 Score=19.93 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HhhccCccEEEEeCCCCC------CCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 29 EVHVLAVDLIITDYCMPG------MTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~------~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.++..+.|++|+|.-.+- .+..+++..+| .....-.+|++|.+.
T Consensus 118 ~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r---~l~d~gKvIilTvhp 167 (235)
T COG2874 118 FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLR---KLSDLGKVIILTVHP 167 (235)
T ss_pred hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHH---HHHhCCCEEEEEeCh
Confidence 344557999999986552 23456667777 344456788888764
No 204
>PRK13936 phosphoheptose isomerase; Provisional
Probab=47.01 E-value=51 Score=18.42 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=21.9
Q ss_pred ccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 35 VDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 35 ~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
=|++|. +..++.+ -.+.++..+ ....|+|.+|+..+.
T Consensus 112 ~Dv~i~-iS~sG~t~~~~~~~~~ak-----~~g~~iI~IT~~~~s 150 (197)
T PRK13936 112 GDVLLA-ISTSGNSANVIQAIQAAH-----EREMHVVALTGRDGG 150 (197)
T ss_pred CCEEEE-EeCCCCcHHHHHHHHHHH-----HCCCeEEEEECCCCC
Confidence 344444 4444433 345566666 456899999986544
No 205
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=46.93 E-value=44 Score=17.60 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=29.2
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCCC--HHHHHHHHH
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGMT--GCELIKKIK 57 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~~--~~~~~~~l~ 57 (82)
.+...+|++..-+. ++...+.+|+|-+...+...- .-++...++
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCD 75 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHH
Confidence 44468898866433 455566899999988776432 244666676
No 206
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=46.89 E-value=17 Score=17.90 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=15.8
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+.++++.++ ....|++++|....
T Consensus 18 ga~e~l~~L~-----~~g~~~~~lTNns~ 41 (101)
T PF13344_consen 18 GAVEALDALR-----ERGKPVVFLTNNSS 41 (101)
T ss_dssp THHHHHHHHH-----HTTSEEEEEES-SS
T ss_pred CHHHHHHHHH-----HcCCCEEEEeCCCC
Confidence 3677888887 23467888887653
No 207
>PF13941 MutL: MutL protein
Probab=46.55 E-value=80 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHH---HHHHhhcCCCCCccEEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELI---KKIKLQSFTFREIPTVII 71 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~---~~l~~~~~~~~~~~vi~l 71 (82)
+.+...+||+||+-=...+++..-++ +.|. ......|||+-
T Consensus 118 ~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La---~~~~~~pVIyA 161 (457)
T PF13941_consen 118 EEIREIRPDIILLAGGTDGGNKEVILHNAEMLA---EANLRIPVIYA 161 (457)
T ss_pred HHHhccCCCEEEEeCCccCCchHHHHHHHHHHH---hCCCCCcEEEE
Confidence 46777799999997777776654444 4444 34556665543
No 208
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.46 E-value=46 Score=17.71 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=22.0
Q ss_pred ccCccEEEEeCCCCCC--------CH-------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGM--------TG-------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~--------~~-------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+|++-+..-+. +- .++++.++ ...+..+|++++..
T Consensus 59 ~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~---~~~~~~~ii~~~p~ 113 (191)
T cd01834 59 PAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLK---NKESAPRIVLVSPI 113 (191)
T ss_pred cCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHH---cccCCCcEEEECCc
Confidence 3469999984433221 11 12334443 34667788888754
No 209
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.35 E-value=50 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=15.2
Q ss_pred ccCccEEEEeCCCCCCCH
Q 039883 32 VLAVDLIITDYCMPGMTG 49 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~ 49 (82)
...||++|+|-.+.-++.
T Consensus 163 ~~~pdILllDEvlavGD~ 180 (249)
T COG1134 163 HVEPDILLLDEVLAVGDA 180 (249)
T ss_pred hcCCCEEEEehhhhcCCH
Confidence 447999999999987775
No 210
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=46.22 E-value=82 Score=20.63 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=26.4
Q ss_pred HhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 29 EVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
++.....|+|.+|...... ...+.+++++ ...+.+++++
T Consensus 248 ~l~~ag~d~i~id~a~G~s~~~~~~i~~ik---~~~~~~~v~a 287 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNSIYQIDMIKKLK---SNYPHVDIIA 287 (495)
T ss_pred HHHHCCCCEEEEecCCCCchHHHHHHHHHH---hhCCCceEEE
Confidence 3444579999999864432 2367899998 4556677766
No 211
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.30 E-value=53 Score=21.00 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=26.5
Q ss_pred CccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.||+|.+....+.. ...++.+.+| ...+.++|++.-.
T Consensus 68 ~~Dlv~is~~t~~~~~~~~ia~~iK---~~~p~~~vv~GG~ 105 (472)
T TIGR03471 68 DYDLVVLHTSTPSFPSDVKTAEALK---EQNPATKIGFVGA 105 (472)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHH---HhCCCCEEEEECC
Confidence 69998887766654 4677888888 5567777666543
No 212
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=45.09 E-value=47 Score=17.49 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=12.0
Q ss_pred hhccCccEEEEeCCCCC
Q 039883 30 VHVLAVDLIITDYCMPG 46 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~ 46 (82)
+...+||+|++.+..-+
T Consensus 60 ~~~~~pd~v~i~~G~ND 76 (177)
T cd01822 60 LAQHKPDLVILELGGND 76 (177)
T ss_pred HHhcCCCEEEEeccCcc
Confidence 33458999999776654
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=44.90 E-value=67 Score=19.34 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=19.7
Q ss_pred HHhhcc--CccEEEEeCCCCCCC-----HHHHHHHHH
Q 039883 28 EEVHVL--AVDLIITDYCMPGMT-----GCELIKKIK 57 (82)
Q Consensus 28 ~~~~~~--~~d~vi~d~~~~~~~-----~~~~~~~l~ 57 (82)
+.++.. ++|+||+|..-|... ..++.+..+
T Consensus 141 ~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~ 177 (282)
T COG0421 141 EFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCR 177 (282)
T ss_pred HHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHH
Confidence 555533 599999999999543 234555554
No 214
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.76 E-value=53 Score=17.92 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=16.6
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+....||+|++.+.+|.. ..++...+
T Consensus 94 ~I~~~~pdiv~vglG~PkQ--E~~~~~~~ 120 (171)
T cd06533 94 RINASGADILFVGLGAPKQ--ELWIARHK 120 (171)
T ss_pred HHHHcCCCEEEEECCCCHH--HHHHHHHH
Confidence 4555577888877777762 23455554
No 215
>PRK15482 transcriptional regulator MurR; Provisional
Probab=44.54 E-value=66 Score=18.97 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=20.1
Q ss_pred EeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 40 TDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 40 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+...--.....+.++..+ ...+++|.+|+.....
T Consensus 189 iS~sg~t~~~~~~~~~a~-----~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 189 ISYSGSKKEIVLCAEAAR-----KQGATVIAITSLADSP 222 (285)
T ss_pred EeCCCCCHHHHHHHHHHH-----HCCCEEEEEeCCCCCc
Confidence 333333334455666666 3458999999876543
No 216
>PRK07413 hypothetical protein; Validated
Probab=44.12 E-value=83 Score=20.00 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=29.3
Q ss_pred HhhccCccEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCM-----PGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~-----~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
++....+|+||+|=-+ .-.+--+++..|+ .....+ =+++|+..-++
T Consensus 120 ~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~---~rP~~~-evVLTGR~ap~ 170 (382)
T PRK07413 120 AIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLK---SRPEGL-EIIITGRAAPQ 170 (382)
T ss_pred HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHH---hCCCCC-EEEEeCCCCCH
Confidence 3445579999998643 3456777888888 333333 46666665544
No 217
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=43.37 E-value=72 Score=19.06 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=28.1
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.++...||++|+=.=.+...|-.-.+.+- .....|.|+++...
T Consensus 55 ~~~~~~pDf~i~isPN~a~PGP~~ARE~l----~~~~iP~IvI~D~p 97 (277)
T PRK00994 55 MLEEWKPDFVIVISPNPAAPGPKKAREIL----KAAGIPCIVIGDAP 97 (277)
T ss_pred HHHhhCCCEEEEECCCCCCCCchHHHHHH----HhcCCCEEEEcCCC
Confidence 34566899888766555555655565554 24457999998653
No 218
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=42.69 E-value=56 Score=19.12 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=38.6
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCC-CCH-HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPG-MTG-CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~-~~~-~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.....||++..-+. +....++||+|-+...|.. +.+ .+++..|+ ...-+-+++++.+.
T Consensus 127 ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~---eeGiRd~v~v~vGG 194 (227)
T COG5012 127 MLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLK---EEGIRDKVIVMVGG 194 (227)
T ss_pred HHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHHHHH---HcCCccCeEEeecC
Confidence 34456888866433 5666778999999887763 334 34667777 55666778887554
No 219
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.18 E-value=73 Score=18.83 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=16.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
+..+|++|+|. |...|..-+..+.
T Consensus 164 ~~~~D~vIID~--PP~~g~~d~~i~~ 187 (265)
T COG0489 164 WGEYDYVIIDT--PPGTGDADATVLQ 187 (265)
T ss_pred ccCCCEEEEeC--CCCchHHHHHHHh
Confidence 33599999985 5555666565555
No 220
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=41.80 E-value=51 Score=20.21 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=12.0
Q ss_pred hhccCccEEEEeCCCC
Q 039883 30 VHVLAVDLIITDYCMP 45 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~ 45 (82)
+...+||+||.|...+
T Consensus 88 ~~~~~pDlVi~d~~~~ 103 (392)
T TIGR01426 88 YKGDRPDLIVYDIASW 103 (392)
T ss_pred hcCCCCCEEEECCccH
Confidence 3445799999998654
No 221
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=41.49 E-value=1e+02 Score=20.73 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=31.8
Q ss_pred ChhHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 25 ~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+-.++++..+|+++|==..-++.-.-+.++... ....++-|..+|.+.
T Consensus 372 ~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma---~~~~rPIIFaLSNPt 419 (559)
T PTZ00317 372 TLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMA---SNVERPIIFPLSNPT 419 (559)
T ss_pred CHHHHHhccCCCEEEEecCCCCCCCHHHHHHHH---hcCCCCEEEECCCCC
Confidence 344778888999988655567766677888776 344454455556554
No 222
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=41.23 E-value=75 Score=19.10 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=17.4
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+-.+.++..+ ...+|+|.+|+..+..
T Consensus 109 ~~~~~~~~ak-----~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 109 EILALIPVLK-----RLHVPLICITGRPESS 134 (326)
T ss_pred HHHHHHHHHH-----HCCCcEEEEECCCCCc
Confidence 3455566655 4458999999876544
No 223
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.87 E-value=61 Score=17.57 Aligned_cols=16 Identities=6% Similarity=0.002 Sum_probs=11.0
Q ss_pred hhccCccEEEEeCCCC
Q 039883 30 VHVLAVDLIITDYCMP 45 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~ 45 (82)
+...+||+|++-+..-
T Consensus 55 l~~~~pd~vii~~G~N 70 (200)
T cd01829 55 IAEEKPDVVVVFLGAN 70 (200)
T ss_pred HhcCCCCEEEEEecCC
Confidence 4456899988875443
No 224
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.74 E-value=75 Score=18.54 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=24.4
Q ss_pred hhccCccEEEEeCCCCCC-----CH----HHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPGM-----TG----CELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-----~~----~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+||++++-=.+-+. .. .++++.++ . ...+|++++.++.|.
T Consensus 35 ~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~---~-~~~i~v~~i~GNHD~ 87 (253)
T TIGR00619 35 AKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS---D-ANPIPIVVISGNHDS 87 (253)
T ss_pred HHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---h-cCCceEEEEccCCCC
Confidence 445679988873333221 11 12344444 1 223789999988765
No 225
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=40.15 E-value=78 Score=18.55 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=30.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+.+....+|.|++|+.....+.-++...++ ........+++-+..
T Consensus 27 e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~-a~~~~g~~~~VRv~~ 71 (249)
T TIGR02311 27 EICAGAGFDWLLIDGEHAPNDVRTILSQLQ-ALAPYPSSPVVRPAI 71 (249)
T ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHH-HHHhcCCCcEEECCC
Confidence 555666899999999999888888877776 221223345555543
No 226
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.76 E-value=49 Score=19.83 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.+++++.+| .....+|+++++-.+
T Consensus 81 ~lel~~~~r---~~~~~~Pivlm~Y~N 104 (265)
T COG0159 81 TLELVEEIR---AKGVKVPIVLMTYYN 104 (265)
T ss_pred HHHHHHHHH---hcCCCCCEEEEEecc
Confidence 344555555 567889999998654
No 227
>PRK02947 hypothetical protein; Provisional
Probab=39.57 E-value=76 Score=18.50 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=21.7
Q ss_pred ccEEE-EeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 35 VDLII-TDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 35 ~d~vi-~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
-|++| +...--..+..+.++..+ ...+|+|.+|+..
T Consensus 107 ~Dv~i~iS~sG~t~~~i~~~~~a~-----~~g~~vI~iT~~~ 143 (246)
T PRK02947 107 GDVLIVVSNSGRNPVPIEMALEAK-----ERGAKVIAVTSLA 143 (246)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH-----HCCCEEEEEcCCc
Confidence 34433 344333334566667666 4468999999875
No 228
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=39.41 E-value=59 Score=23.21 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=23.2
Q ss_pred HhhccCccEEEEeCCCCCCCHHH----HHHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCE----LIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~----~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
++-.-.||+||||-..--.+... .++.|| .-+-|++|++
T Consensus 429 AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~Ir-------trRRiVLTGY 471 (1387)
T KOG1016|consen 429 ALLEPGPDLVICDEGHRIKNITAEISMALKAIR-------TRRRIVLTGY 471 (1387)
T ss_pred HhcCCCCCeEEecCCceeccchHHHHHHHHHhh-------hceeEEEecc
Confidence 33344699999999876554433 234444 1235777765
No 229
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.99 E-value=55 Score=16.45 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred CccEEEEeCCCCC--CCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPG--MTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~--~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+-|++|. +..++ .+-.+.++..+ ....++|.+|+..
T Consensus 43 ~~dl~I~-iS~SG~t~e~i~~~~~a~-----~~g~~iI~IT~~~ 80 (119)
T cd05017 43 RKTLVIA-VSYSGNTEETLSAVEQAK-----ERGAKIVAITSGG 80 (119)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHH-----HCCCEEEEEeCCc
Confidence 3455444 33333 34455666666 3357999999654
No 230
>COG1162 Predicted GTPases [General function prediction only]
Probab=38.49 E-value=95 Score=19.06 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
++|+....|+.+..-+-+.|- .-....-.|+|+++-.
T Consensus 84 iiIvs~~~P~~~~~~ldR~Lv-~ae~~gi~pvIvlnK~ 120 (301)
T COG1162 84 IIVVSLVDPDFNTNLLDRYLV-LAEAGGIEPVIVLNKI 120 (301)
T ss_pred EEEEeccCCCCCHHHHHHHHH-HHHHcCCcEEEEEEcc
Confidence 678888999999777766665 3245666788888754
No 231
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=38.42 E-value=88 Score=18.66 Aligned_cols=49 Identities=14% Similarity=0.041 Sum_probs=31.6
Q ss_pred ChhHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 25 TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 25 ~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+..++++..+||++|==..-++.-..+.++... ....++-|..+|.+..
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma---~~~~~PIIFaLSNPt~ 145 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXA---EINERPVIFALSNPTS 145 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHh---hcCCCCEEEECCCcCC
Confidence 334778888999888666657766677888776 3444444444555443
No 232
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=38.40 E-value=84 Score=19.08 Aligned_cols=41 Identities=32% Similarity=0.339 Sum_probs=24.8
Q ss_pred cCccEEEEeCCCCCCCH--HHHHHH-HHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDYCMPGMTG--CELIKK-IKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~--~~~~~~-l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++|+++|+|-=.++.|. .++++. +. .......-|++|++..
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~---~lk~~GatIifSsH~M 190 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIF---ELKEEGATIIFSSHRM 190 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHH---HHHhcCCEEEEecchH
Confidence 47999999987776654 334433 33 2333445677777643
No 233
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=38.40 E-value=71 Score=18.64 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=24.8
Q ss_pred CccEEEEeC---CCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDY---CMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~---~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.|.+++.|= .+...++.+++..++ .........+|++|-
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~-~~~~~~g~tii~VTH 201 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLR-ELNKERGKTIIMVTH 201 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHH-HHHHhcCCEEEEEcC
Confidence 799999996 444556677777776 222333455666663
No 234
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.21 E-value=70 Score=17.45 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=14.2
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+....||+|++.+..|. -..++...+
T Consensus 96 ~I~~~~pdiv~vglG~Pk--QE~~~~~~~ 122 (172)
T PF03808_consen 96 RINASGPDIVFVGLGAPK--QERWIARHR 122 (172)
T ss_pred HHHHcCCCEEEEECCCCH--HHHHHHHHH
Confidence 344456666666666665 223444444
No 235
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=37.89 E-value=47 Score=18.21 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=25.0
Q ss_pred ccCccEEEEeCCCCCCCHH----HHHHHHHhhcCCCCCccEEEEeeCCchhhh
Q 039883 32 VLAVDLIITDYCMPGMTGC----ELIKKIKLQSFTFREIPTVIISSENILARI 80 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~----~~~~~l~~~~~~~~~~~vi~ls~~~~~~~~ 80 (82)
..++|+||+|-=--..... ..++.|. .+..++|+.|+......+
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~-----k~~~kii~~Tg~~~~~~~ 131 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLL-----KPGGKIILCTGEEMEELI 131 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHh-----CccceEEEecHHHHHHHH
Confidence 4579999999643222222 2233333 336788888877655443
No 236
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.59 E-value=88 Score=18.44 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=25.1
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.+...+||+|++-...+ ++..+++.++ ......+++..+.
T Consensus 187 ~l~~~~pd~v~~~~~~~--~~~~~~~~~~---~~G~~~~~~~~~~ 226 (312)
T cd06346 187 AAAAGGPDALVVIGYPE--TGSGILRSAY---EQGLFDKFLLTDG 226 (312)
T ss_pred HHHhcCCCEEEEecccc--hHHHHHHHHH---HcCCCCceEeecc
Confidence 34455799998765433 6778888887 3344556655433
No 237
>PRK10116 universal stress protein UspC; Provisional
Probab=37.55 E-value=60 Score=16.48 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=25.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+..+...+|+|++..+-+..-.. +.. .-+.--.....||+++-.+.
T Consensus 96 ~~a~~~~~DLiV~g~~~~~~~~~-~~s-~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 96 EVCRKHHFDLVICGNHNHSFFSR-ASC-SAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HHHHHhCCCEEEEcCCcchHHHH-HHH-HHHHHHhcCCCCEEEEeCCC
Confidence 34456689999998775532111 111 11111246677888886543
No 238
>PRK00536 speE spermidine synthase; Provisional
Probab=37.53 E-value=73 Score=18.98 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=12.8
Q ss_pred cCccEEEEeCCCCCCCHHHHH
Q 039883 33 LAVDLIITDYCMPGMTGCELI 53 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~ 53 (82)
.++|+||+|.. ++.+-++.+
T Consensus 138 ~~fDVIIvDs~-~~~~fy~~~ 157 (262)
T PRK00536 138 KKYDLIICLQE-PDIHKIDGL 157 (262)
T ss_pred CcCCEEEEcCC-CChHHHHHH
Confidence 47999999975 333334433
No 239
>PRK13529 malate dehydrogenase; Provisional
Probab=37.44 E-value=1.3e+02 Score=20.32 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=31.0
Q ss_pred hHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 27 TEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 27 ~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.++++..+|+++|==..-++.-.-+.++... ....++-|..+|.+..
T Consensus 375 ~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma---~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 375 LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMA---AHCERPIIFPLSNPTS 421 (563)
T ss_pred HHHHhccCCCEEEEecCCCCCCCHHHHHHHH---hcCCCCEEEECCCcCC
Confidence 3778888999988666667766678888776 3344444445555543
No 240
>COG0218 Predicted GTPase [General function prediction only]
Probab=37.38 E-value=83 Score=18.07 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=15.7
Q ss_pred ccEEEEeCCCCCCC-HHHHHHHHH
Q 039883 35 VDLIITDYCMPGMT-GCELIKKIK 57 (82)
Q Consensus 35 ~d~vi~d~~~~~~~-~~~~~~~l~ 57 (82)
--++++|.+.+... -.+++.+++
T Consensus 109 ~vvlliD~r~~~~~~D~em~~~l~ 132 (200)
T COG0218 109 GVVLLIDARHPPKDLDREMIEFLL 132 (200)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHH
Confidence 44677888887544 466777777
No 241
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=37.37 E-value=51 Score=17.99 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=17.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
-||++++|=.....+. ..+.++ ...-.+|++-++-.
T Consensus 79 lPDLilIDGG~gQl~a--a~~~l~---~lgl~i~viglaK~ 114 (155)
T PF08459_consen 79 LPDLILIDGGKGQLNA--AKEVLK---ELGLNIPVIGLAKN 114 (155)
T ss_dssp --SEEEESSSHHHHHH--HHHHHH---CTT----EEEEESS
T ss_pred CCCEEEEcCCHHHHHH--HHHHHH---HcCCCeEEEEEEec
Confidence 3999999976655332 233334 33334888887744
No 242
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.20 E-value=90 Score=18.43 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=22.1
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.+...+||++|+|..-- +. +..+.++ . ...+++++...
T Consensus 74 ~~l~~~~~d~vV~D~y~~--~~-~~~~~~k---~--~~~~l~~iDD~ 112 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGL--DA-DWEKLIK---E--FGRKILVIDDL 112 (279)
T ss_pred HHHHhcCCCEEEEcCCCC--CH-HHHHHHH---H--hCCeEEEEecC
Confidence 345556899999998622 22 3445555 1 23356666643
No 243
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=36.92 E-value=89 Score=18.27 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=14.4
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
...+.++..+ ...+++|.+|+.
T Consensus 190 ~~~~~~~~ak-----~~g~~vI~IT~~ 211 (284)
T PRK11302 190 SLVELAQLAR-----ENGATVIAITSA 211 (284)
T ss_pred HHHHHHHHHH-----HcCCeEEEECCC
Confidence 3455555555 446899999973
No 244
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=36.88 E-value=57 Score=20.11 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+++...+||+||+.-+-.. .++-+..+ .|.|.++..
T Consensus 112 Eai~a~kPdLIIiggR~ak--~yd~l~ki---------APti~l~~d 147 (320)
T COG4607 112 EAIAAAKPDLIIIGGRAAK--AYDKLSKI---------APTIDLGAD 147 (320)
T ss_pred HHHHhcCCCEEEECcHHHH--HHHHHHhh---------CCeEEeccc
Confidence 7889999999998765442 33333333 357777654
No 245
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=36.85 E-value=84 Score=18.67 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=26.7
Q ss_pred hhccCccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+....++-+++-+...+.. ..+.++..+ ...+++|.+|......
T Consensus 172 ~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak-----~~ga~vIaiT~~~~sp 217 (281)
T COG1737 172 LALLTPGDVVIAISFSGYTREIVEAAELAK-----ERGAKVIAITDSADSP 217 (281)
T ss_pred HHhCCCCCEEEEEeCCCCcHHHHHHHHHHH-----HCCCcEEEEcCCCCCc
Confidence 3344677555555555533 345555555 4458999999875543
No 246
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=36.75 E-value=39 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=22.2
Q ss_pred HHhhccCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 28 EEVHVLAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
|.+...+||+||....... ....+..+.++ ...+|++++
T Consensus 72 E~i~~l~PDlvi~~~~~~~~~~~~~~~~~l~-----~~gipv~~~ 111 (287)
T TIGR03868 72 EAVLETEPDLVYAGWESNLTAEGAGERADLA-----SLGVNTYVA 111 (287)
T ss_pred hHhhcCCCCEEEeccccccCCCCCCCHHHHH-----HCCCeEEEC
Confidence 6788889999998543321 11122344455 234677765
No 247
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=36.74 E-value=64 Score=19.55 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=9.5
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 039883 38 IITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~~l~ 57 (82)
||+|......+++.++-.++
T Consensus 5 vIiDtD~g~DDa~AL~~al~ 24 (311)
T PRK10443 5 IILDCDPGHDDAIALVLALA 24 (311)
T ss_pred EEEECCCChHHHHHHHHHhc
Confidence 45555544444444444443
No 248
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=36.62 E-value=61 Score=16.27 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=30.5
Q ss_pred ceeeecChh--HHhh-ccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 19 GFDLSPTDT--EEVH-VLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 19 ~~~~~~~~~--~~~~-~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+......+ ..+. ...|.+||..-.|- .+....++..+. .... ..|+++++..++.
T Consensus 62 ~~~~~~~~~~~~~l~~~~~p~Vvias~gml~~G~s~~~l~~~~---~d~~--n~Ii~~gy~~~~T 121 (126)
T PF10996_consen 62 NFKFVKSVDESKELNALSGPKVVIASSGMLEGGRSRHYLKRLA---SDPR--NTIIFTGYQAPGT 121 (126)
T ss_dssp TEEEEESHHHHHHHHHSCSSEEEEESSTTSSSSHHHHHHHHHT---TSTT--SEEEESSS--TTS
T ss_pred CeEEecccccccccccCCCCeEEEeCCCCCCCCHHHHHHHHHc---CCCC--CeEEEecCCCCCC
Confidence 444444433 2233 23799988866664 555666676665 2222 3477777766544
No 249
>PRK00811 spermidine synthase; Provisional
Probab=36.29 E-value=96 Score=18.48 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=16.4
Q ss_pred cCccEEEEeCCCCCCCH-----HHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTG-----CELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~-----~~~~~~l~ 57 (82)
.++|+|++|..-|...+ .++.+.++
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCK 178 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHH
Confidence 47999999987664332 34455554
No 250
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=36.17 E-value=1e+02 Score=18.85 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=25.3
Q ss_pred HhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 29 EVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
.+....+++|.+|...... ...+.+++++ ...+.+++++
T Consensus 101 ~l~eagv~~I~vd~~~G~~~~~~~~i~~ik---~~~p~v~Vi~ 140 (325)
T cd00381 101 ALVEAGVDVIVIDSAHGHSVYVIEMIKFIK---KKYPNVDVIA 140 (325)
T ss_pred HHHhcCCCEEEEECCCCCcHHHHHHHHHHH---HHCCCceEEE
Confidence 3344579999999865432 3467788888 3344566665
No 251
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=36.16 E-value=1e+02 Score=18.69 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=30.6
Q ss_pred hhHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 26 ~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..++++..+||++|==..-++.-.-+.++... ....++-|..+|.+.
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma---~~~~~PIIFaLSNPt 143 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMA---KSNERPIIFALSNPT 143 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHH---hcCCCCEEEECCCcC
Confidence 34677888999888655566766678888776 344444444555543
No 252
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=35.86 E-value=93 Score=18.18 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 28 EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+.+.....|.+.+|...++. ..++.++.++ ...+.+|||.--+-.+.
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~---~~~~~ipIIgNGgI~s~ 203 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILS---EEFNDKIIIGNNSIDDI 203 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHH---HhcCCCcEEEECCcCCH
Confidence 34556678988889877764 3477888888 33334777664443333
No 253
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=35.62 E-value=62 Score=18.59 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 50 CELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
-++.++++ ...+|+|++|+.-++
T Consensus 79 Kef~e~ik-----e~di~fiVvSsGm~~ 101 (220)
T COG4359 79 KEFVEWIK-----EHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHH-----HcCCCEEEEeCCCch
Confidence 45777777 456899999987554
No 254
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=35.60 E-value=51 Score=19.80 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=23.8
Q ss_pred ccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 35 VDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 35 ~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
-=+++.|..+|.. .|..+++..+ . ...+|+.+.+
T Consensus 74 ~valvSDAG~P~ISDPG~~LV~~~~---~--~~i~v~~ipG 109 (276)
T TIGR00096 74 NIAVSSDAGPPLISDPGHLLVACRE---K--ANIIVVPLPG 109 (276)
T ss_pred cEEEEecCCCCCcCCccHHHHHHHH---H--CCCeEEcCCh
Confidence 3468899999965 5888998888 2 2346666543
No 255
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=35.53 E-value=1.1e+02 Score=18.73 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=3.5
Q ss_pred EEEeCCCC
Q 039883 38 IITDYCMP 45 (82)
Q Consensus 38 vi~d~~~~ 45 (82)
||+|....
T Consensus 2 vIiDtD~G 9 (318)
T cd02654 2 VILDNDIA 9 (318)
T ss_pred EEEEcCCC
Confidence 34444444
No 256
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=35.53 E-value=68 Score=20.14 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=27.6
Q ss_pred ccEEEEe-CCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 35 VDLIITD-YCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 35 ~d~vi~d-~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|.++++| .+|-+...+.|+.+.- .....|+++++.+..
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAl----E~d~~PiiimaTNrg 327 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRAL----ENDMAPIIIMATNRG 327 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHh----hhccCcEEEEEcCCc
Confidence 7777765 6889999999887665 244568888876544
No 257
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.48 E-value=95 Score=18.21 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=23.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|.+...+||+||.-.. ...+....+. ....|++.+...
T Consensus 109 E~i~~lkPDlIi~~~~----~~~~~~~~~~-----~~~~pvv~~~~~ 146 (319)
T COG0614 109 EKIVALKPDLIIASSS----SQDDLIYKLL-----SLGAPVVVVDYG 146 (319)
T ss_pred HHhhhcCCCEEEEecc----cchhHHHHHH-----hcCCCEEEECCc
Confidence 6677889999998777 1222222222 334677777654
No 258
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.27 E-value=45 Score=19.81 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.2
Q ss_pred HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 50 CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+++++.+| .....+|+++++-.+
T Consensus 75 ~~~~~~ir---~~~~~~pivlm~Y~N 97 (259)
T PF00290_consen 75 FELVKEIR---KKEPDIPIVLMTYYN 97 (259)
T ss_dssp HHHHHHHH---HHCTSSEEEEEE-HH
T ss_pred HHHHHHHh---ccCCCCCEEEEeecc
Confidence 44555555 457889999998643
No 259
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=34.87 E-value=57 Score=18.63 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=8.6
Q ss_pred cCccEEEEeC
Q 039883 33 LAVDLIITDY 42 (82)
Q Consensus 33 ~~~d~vi~d~ 42 (82)
.+|+++|+|.
T Consensus 110 ~~~~lvviDp 119 (239)
T cd01125 110 RRIDLVVIDP 119 (239)
T ss_pred cCCCEEEECC
Confidence 4799999994
No 260
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=34.70 E-value=42 Score=16.61 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=13.4
Q ss_pred HhhccCccEEEEeCCCCCC
Q 039883 29 EVHVLAVDLIITDYCMPGM 47 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~ 47 (82)
......+|+|++...-+..
T Consensus 89 ~a~~~~~dlIV~G~~~~~~ 107 (132)
T cd01988 89 TAKERQADLIIMGWHGSTS 107 (132)
T ss_pred HHHhcCCCEEEEecCCCCC
Confidence 4445579999998876553
No 261
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=34.43 E-value=1.2e+02 Score=19.10 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=26.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 38 IITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
||+--.-|-.-+.+.++.|. .+...-.+|.|++|..+...
T Consensus 45 VL~RG~~~i~~~~~Alr~L~-~~~g~lkIP~vfLTNGGg~~ 84 (389)
T KOG1618|consen 45 VLFRGHRPIPGALKALRRLV-DNQGQLKIPFVFLTNGGGIL 84 (389)
T ss_pred EEEecCCCCcchHHHHHHHH-hcCCCeeccEEEEeCCCCcc
Confidence 44444444445677888887 44556689999999876643
No 262
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=34.40 E-value=1.1e+02 Score=18.66 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=29.3
Q ss_pred hhccCccEEEEeCCCCCCC-----HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPGMT-----GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~-----~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+.-+.++|...-+++ |..+.+.+.. ....+.|+|++++.+..
T Consensus 119 i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~--A~e~k~P~v~f~aSGGA 169 (294)
T COG0777 119 INGLPVVLAVMDFAFMGGSMGSVVGEKITRAIER--AIEDKLPLVLFSASGGA 169 (294)
T ss_pred ECCeEEEEEEEeccccccchhHHHHHHHHHHHHH--HHHhCCCEEEEecCcch
Confidence 3444566777888665544 6666666641 24556899999877654
No 263
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=34.09 E-value=90 Score=19.08 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=20.8
Q ss_pred HHhhccCccEEEEeCCCC-CCCHHHHHHHHH
Q 039883 28 EEVHVLAVDLIITDYCMP-GMTGCELIKKIK 57 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~-~~~~~~~~~~l~ 57 (82)
..+...+|+++++|.... ..++-.....||
T Consensus 37 ~~i~~~~f~llVVDps~~g~~~~~~~~eelr 67 (300)
T COG2342 37 NEILNSPFDLLVVDPSYCGPFNTPWTIEELR 67 (300)
T ss_pred HHHhcCCCcEEEEeccccCCCCCcCcHHHHH
Confidence 457777899999999443 445555566666
No 264
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=34.09 E-value=1.4e+02 Score=19.65 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=26.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHH---HHHHHHhhcCCCCCccEEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCE---LIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~---~~~~l~~~~~~~~~~~vi~l 71 (82)
+.+...+||+||+-=...+++-.- ..+.|- ......|||+-
T Consensus 114 ~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La---~~~~~~pIIyA 157 (463)
T TIGR01319 114 EAIEESNLDIILFAGGTDGGEEECGIHNAKMLA---EHGLDCAIIVA 157 (463)
T ss_pred HHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHH---hcCCCCcEEEe
Confidence 556677899999987777766444 344554 45556675543
No 265
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=33.90 E-value=88 Score=17.36 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=24.7
Q ss_pred hhccCccEEEEeCCCCCC--CH-HHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMPGM--TG-CELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~--~~-~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+||++++-=.+-+. .. ..+...++ ......|+.++.++.+.
T Consensus 28 ~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~---~l~~~~~v~~v~GNHD~ 75 (223)
T cd07385 28 INALKPDLVVLTGDLVDGSVDVLELLLELLK---KLKAPLGVYAVLGNHDY 75 (223)
T ss_pred HhccCCCEEEEcCcccCCcchhhHHHHHHHh---ccCCCCCEEEECCCccc
Confidence 445579988873333322 21 13444444 33345788888776554
No 266
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=33.59 E-value=77 Score=19.65 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=18.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHH
Q 039883 32 VLAVDLIITDYCMPGMTGCELI 53 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~ 53 (82)
..++|+||+|..-|.+.+..+.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred cCCceEEEEecCCccchHHHHH
Confidence 4479999999999998886653
No 267
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=33.58 E-value=91 Score=17.39 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=16.2
Q ss_pred CccEEEEeCCCCCCCH---HHHHHHHH
Q 039883 34 AVDLIITDYCMPGMTG---CELIKKIK 57 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~---~~~~~~l~ 57 (82)
+|+++|+|-=..+.|. ..+.+.++
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 7999999976655543 33455565
No 268
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=33.40 E-value=72 Score=16.21 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=24.5
Q ss_pred ccCccEEEEeCCCCCCC------HHH-------HHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCMPGMT------GCE-------LIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~------~~~-------~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..+||+|++....-+.. -.. +++.++ ...+..++++++...
T Consensus 63 ~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~vv~~~~~~ 116 (187)
T cd00229 63 KDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALR---ERAPGAKVILITPPP 116 (187)
T ss_pred cCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHH---HHCCCCcEEEEeCCC
Confidence 44799999988666542 111 223333 235777888887653
No 269
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.30 E-value=82 Score=18.66 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 50 CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+++++.+| .....+|+++++-.+
T Consensus 77 ~~~~~~~r---~~~~~~p~vlm~Y~N 99 (258)
T PRK13111 77 FELVREIR---EKDPTIPIVLMTYYN 99 (258)
T ss_pred HHHHHHHH---hcCCCCCEEEEeccc
Confidence 45555555 456778999888543
No 270
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=33.17 E-value=75 Score=18.52 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=17.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
...|++++.+.+.+.|..+++++..
T Consensus 121 ~svDv~VfcLSLMGTn~~~fi~EA~ 145 (219)
T PF05148_consen 121 ESVDVAVFCLSLMGTNWPDFIREAN 145 (219)
T ss_dssp T-EEEEEEES---SS-HHHHHHHHH
T ss_pred CceeEEEEEhhhhCCCcHHHHHHHH
Confidence 3589999999999999999887764
No 271
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=33.10 E-value=98 Score=17.61 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=28.7
Q ss_pred HHhhccCccEEEE--eCCCCCC--CHHHHHH---HHHhhcCCCCCccEEEEeeCCchh
Q 039883 28 EEVHVLAVDLIIT--DYCMPGM--TGCELIK---KIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 28 ~~~~~~~~d~vi~--d~~~~~~--~~~~~~~---~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++...+||+|++ |+.-.+. +..++.. +++..-...+..|++.+.++.|..
T Consensus 36 ~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 36 LALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred HHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 3456668998776 4433322 2323444 333122345678999998876644
No 272
>PRK09982 universal stress protein UspD; Provisional
Probab=33.10 E-value=76 Score=16.37 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=22.8
Q ss_pred HhhccCccEEEEeCCCCCCCHHH-HHHHHHhhcCCCCCccEEEEe
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCE-LIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~-~~~~l~~~~~~~~~~~vi~ls 72 (82)
..+...+|+|++..+ .+|+. ++. ..+.--....+||+++-
T Consensus 98 ~A~~~~aDLIVmG~~---~~~~~~~~~-va~~V~~~s~~pVLvv~ 138 (142)
T PRK09982 98 IMQKEQCDLLVCGHH---HSFINRLMP-AYRGMINKMSADLLIVP 138 (142)
T ss_pred HHHHcCCCEEEEeCC---hhHHHHHHH-HHHHHHhcCCCCEEEec
Confidence 344568999999964 34433 332 21111246677887763
No 273
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=32.94 E-value=52 Score=20.13 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=11.2
Q ss_pred hhccCccEEEEeCCC
Q 039883 30 VHVLAVDLIITDYCM 44 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~ 44 (82)
++..+||+||.|...
T Consensus 100 ~~~~~pDlvi~d~~~ 114 (401)
T cd03784 100 ARDWGPDLVVADPLA 114 (401)
T ss_pred hcccCCCEEEeCcHH
Confidence 344689999999843
No 274
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.94 E-value=85 Score=16.87 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEE-EEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTV-IISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi-~ls~~ 74 (82)
+.++..+||+||+=--++..-.+..++.- ...+.+|++ ++|..
T Consensus 83 ~~l~~~~PD~IIsThp~~~~~~l~~lk~~----~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 83 RLLREFQPDLIISTHPFPAQVPLSRLKRR----GRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHhhcCCCEEEECCcchhhhHHHHHHHh----hcccCCcEEEEEcCC
Confidence 45667799999986555542223333322 234466765 55543
No 275
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=32.85 E-value=92 Score=18.97 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=10.4
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 039883 38 IITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~~l~ 57 (82)
||+|......+++.++-.++
T Consensus 6 vIiDtD~G~DDa~Al~~al~ 25 (313)
T PRK09955 6 IILDCDPGHDDAIAMMMAAK 25 (313)
T ss_pred EEEECCCChHHHHHHHHHhc
Confidence 55555554445555554444
No 276
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=32.82 E-value=1.1e+02 Score=18.45 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=14.3
Q ss_pred CccEEEEeCCCCCCCH--HHHHHHHH
Q 039883 34 AVDLIITDYCMPGMTG--CELIKKIK 57 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~--~~~~~~l~ 57 (82)
.||+|++| |...| .++++.+.
T Consensus 240 ~~D~Vv~d---PPr~G~~~~~~~~l~ 262 (315)
T PRK03522 240 VPDLVLVN---PPRRGIGKELCDYLS 262 (315)
T ss_pred CCeEEEEC---CCCCCccHHHHHHHH
Confidence 69999999 43444 35666666
No 277
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=32.44 E-value=1.1e+02 Score=18.06 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=24.7
Q ss_pred CccEEEE-----eCCCCCCCH-------HH---HHHHHHhh-cCCCCCccEEEEeeCCch
Q 039883 34 AVDLIIT-----DYCMPGMTG-------CE---LIKKIKLQ-SFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~-----d~~~~~~~~-------~~---~~~~l~~~-~~~~~~~~vi~ls~~~~~ 77 (82)
.|-++++ |..+|+.++ -+ -++.+.+. ....+.+.||++|.+--.
T Consensus 68 ~p~lvtVffGaNDs~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~d 127 (245)
T KOG3035|consen 68 QPVLVTVFFGANDSCLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVD 127 (245)
T ss_pred CceEEEEEecCccccCCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcC
Confidence 4555554 777777665 22 23333211 145567889999876433
No 278
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=32.32 E-value=70 Score=16.06 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=10.1
Q ss_pred CCCCccEEEEeeCC
Q 039883 62 TFREIPTVIISSEN 75 (82)
Q Consensus 62 ~~~~~~vi~ls~~~ 75 (82)
..+..||+++|...
T Consensus 36 ~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 36 YRPKVPIIAVTPNE 49 (117)
T ss_dssp T-TSSEEEEEESSH
T ss_pred hCCCCeEEEEcCcH
Confidence 45668999999754
No 279
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=32.31 E-value=78 Score=16.24 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=22.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.++..+..+.. ..+.++| ...+..-||++|...+.
T Consensus 58 A~lv~v~~~~~---~aI~~lr---kIHPPAHIiVis~~~~~ 92 (107)
T PF04009_consen 58 AALVKVEEDAT---KAIDRLR---KIHPPAHIIVISPRHDV 92 (107)
T ss_pred heEEEecCCch---hHHHHHh---hcCCCceEEEECCCchH
Confidence 45566655553 3456666 56777888999876643
No 280
>PHA02542 41 41 helicase; Provisional
Probab=32.30 E-value=78 Score=20.59 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=26.0
Q ss_pred ccEEEEeCC--CC-C------CCH----HHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 35 VDLIITDYC--MP-G------MTG----CELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 35 ~d~vi~d~~--~~-~------~~~----~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+|+|++|+- |. + .+- -++.+.|| .....-.+|||+++.-+..
T Consensus 302 ~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK-~lAkel~vpVi~lsQLnR~ 356 (473)
T PHA02542 302 PDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELR-GLAVEHDVVVWTAAQTTRS 356 (473)
T ss_pred CCEEEEechhhccCCcccCCCCChHHHHHHHHHHHH-HHHHHhCCeEEEEEeeCcc
Confidence 899999982 11 1 121 12445666 3345667999999976543
No 281
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=32.14 E-value=1.2e+02 Score=20.45 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=23.9
Q ss_pred CccEEEEeC--CCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDY--CMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~--~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+||++++|- +|-|......+...- ..++ ..+|++|-
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~yL---~t~~-~T~liVSH 253 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLENYL---QTWK-ITSLIVSH 253 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHHHH---hhCC-ceEEEEec
Confidence 799999995 777777776665544 2344 45566653
No 282
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=31.87 E-value=60 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=21.3
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
...|++++.+.|.+.|-.++++..+
T Consensus 227 ~svDvaV~CLSLMgtn~~df~kEa~ 251 (325)
T KOG3045|consen 227 ESVDVAVFCLSLMGTNLADFIKEAN 251 (325)
T ss_pred CcccEEEeeHhhhcccHHHHHHHHH
Confidence 3588999999999999999988775
No 283
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=31.67 E-value=92 Score=16.90 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=22.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+|+++++=.........++.+.++ ...+..++|-.|...
T Consensus 1 ~p~lvi~f~s~~~~~~~~i~~~l~---~~~p~~~iiG~st~g 39 (198)
T PF08495_consen 1 RPDLVILFCSPEYDEEAKILEALR---ERLPDAPIIGCSTAG 39 (198)
T ss_pred CCEEEEEEecchhhhhHHHHHHHH---HHCCCCcEEEEccCc
Confidence 466666544443222222777777 556677777776553
No 284
>PRK08760 replicative DNA helicase; Provisional
Probab=31.49 E-value=1.2e+02 Score=19.71 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=26.8
Q ss_pred cCccEEEEeC----CCCCC--C----HHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDY----CMPGM--T----GCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~----~~~~~--~----~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..+++|++|. ..++. + --++.+.|+ .......+|||+++.-+.
T Consensus 338 ~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK-~lAkel~ipVi~lsQLnR 390 (476)
T PRK08760 338 HDLGLIVIDYLQLMSVPGNSENRATEISEISRSLK-GLAKELNVPVIALSQLNR 390 (476)
T ss_pred cCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHH-HHHHHhCCEEEEeeccCc
Confidence 3589999997 21221 1 123456666 334567899999997654
No 285
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=31.42 E-value=77 Score=19.11 Aligned_cols=20 Identities=15% Similarity=-0.064 Sum_probs=10.0
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 039883 38 IITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~~l~ 57 (82)
||+|......+++.++-.++
T Consensus 5 vIiDtD~g~DDa~Al~~al~ 24 (304)
T PRK10768 5 IILDTDPGIDDAVAIAAALF 24 (304)
T ss_pred EEEECCCCHHHHHHHHHHhc
Confidence 45555554444555544443
No 286
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=31.29 E-value=1.1e+02 Score=20.10 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=22.2
Q ss_pred HHhh--ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVH--VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~--~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.+. ..+||++|.|...+ .++-+...++ .+|+|.+++.
T Consensus 128 ~~L~~~~~kFDlvi~e~~~~--c~~~la~~~~-------~~p~i~~ss~ 167 (507)
T PHA03392 128 NLIANKNNKFDLLVTEAFLD--YPLVFSHLFG-------DAPVIQISSG 167 (507)
T ss_pred HHHhcCCCceeEEEecccch--hHHHHHHHhC-------CCCEEEEcCC
Confidence 4455 55799999996533 3443444331 2566666653
No 287
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=31.20 E-value=91 Score=16.68 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=11.7
Q ss_pred hccCccEEEEeCCCCC
Q 039883 31 HVLAVDLIITDYCMPG 46 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~~ 46 (82)
...+|+++++|.-...
T Consensus 92 ~~~~~~~lviD~~~~~ 107 (187)
T cd01124 92 EEFKAKRVVIDSVSGL 107 (187)
T ss_pred HHhCCCEEEEeCcHHH
Confidence 3457999999986543
No 288
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=31.14 E-value=87 Score=21.51 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=29.2
Q ss_pred CccEEEEeCCCCCCCH----HHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIITDYCMPGMTG----CELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~----~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+|++||+|-..-..-- +-+++.+- ...+...+|++|+.-+.+
T Consensus 163 kYsvIIlDEAHERsl~TDiLlGlLKki~---~~R~~LklIimSATlda~ 208 (674)
T KOG0922|consen 163 KYSVIILDEAHERSLHTDILLGLLKKIL---KKRPDLKLIIMSATLDAE 208 (674)
T ss_pred cccEEEEechhhhhhHHHHHHHHHHHHH---hcCCCceEEEEeeeecHH
Confidence 6999999987654322 33445554 467778999999887654
No 289
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=31.14 E-value=1.2e+02 Score=18.08 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||....... ...+....++ .. . |++++..
T Consensus 107 E~i~~l~PDLVi~~~~~~~-~~~~~~~~L~---~~--g-pvv~v~~ 145 (317)
T PRK10957 107 EAVAAQMPDLIVISATGGD-SALALYDQLS---AI--A-PTLVIDY 145 (317)
T ss_pred HHHhhcCCCEEEEeCCCch-hHHHHHHHHH---hh--C-CEEEEeC
Confidence 7788889999998643321 1234556666 22 2 7777753
No 290
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=31.11 E-value=76 Score=16.77 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=11.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHH
Q 039883 37 LIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~ 57 (82)
+|++...||...-..+++...
T Consensus 2 ~vFvS~SMP~~~Lk~l~~~a~ 22 (130)
T TIGR02742 2 MVFVSFSMPEPLLKQLLDQAE 22 (130)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 456677777644444444433
No 291
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.86 E-value=85 Score=21.08 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=29.7
Q ss_pred CccEEEEeCCCCCCCHHHH----HHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 34 AVDLIITDYCMPGMTGCEL----IKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~----~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
++.++|+|-..-..-+.+. ++.+. ...+...+|++|++.+..-
T Consensus 159 ~y~viiLDeahERtlATDiLmGllk~v~---~~rpdLk~vvmSatl~a~K 205 (699)
T KOG0925|consen 159 RYGVIILDEAHERTLATDILMGLLKEVV---RNRPDLKLVVMSATLDAEK 205 (699)
T ss_pred cccEEEechhhhhhHHHHHHHHHHHHHH---hhCCCceEEEeecccchHH
Confidence 5889999987665444443 34443 4568999999998876543
No 292
>PLN02210 UDP-glucosyl transferase
Probab=30.64 E-value=1.4e+02 Score=19.25 Aligned_cols=27 Identities=11% Similarity=-0.052 Sum_probs=17.5
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+...+|++||.|..++= +.++.+++.
T Consensus 98 ~l~~~~~~~vI~D~~~~w--~~~vA~~lg 124 (456)
T PLN02210 98 IIEEKRYSCIISSPFTPW--VPAVAAAHN 124 (456)
T ss_pred HHhcCCCcEEEECCcchh--HHHHHHHhC
Confidence 344557999999988763 444454443
No 293
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=30.50 E-value=86 Score=16.17 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=4.5
Q ss_pred EEEEeCCCCC
Q 039883 37 LIITDYCMPG 46 (82)
Q Consensus 37 ~vi~d~~~~~ 46 (82)
++++|.+-|.
T Consensus 16 l~ViD~~~p~ 25 (141)
T cd01857 16 VQIVDARNPL 25 (141)
T ss_pred EEEEEccCCc
Confidence 3444554443
No 294
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=30.28 E-value=1.8e+02 Score=19.79 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=30.5
Q ss_pred hhHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 26 DTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 26 ~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
-.++++..+|+++|==..-++.-..+.++... ....++-|..+|.+.
T Consensus 393 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma---~~~~rPIIFaLSNPt 439 (581)
T PLN03129 393 LLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMA---SLNERPIIFALSNPT 439 (581)
T ss_pred HHHHHhccCCCEEEEecCCCCCCCHHHHHHHH---hcCCCCEEEECCCCC
Confidence 33677888899888666666666677787776 334444445555554
No 295
>PRK01581 speE spermidine synthase; Validated
Probab=30.13 E-value=1.5e+02 Score=18.87 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=15.7
Q ss_pred cCccEEEEeCCCCCCC------HHHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMT------GCELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~------~~~~~~~l~ 57 (82)
.++|+|++|+.-|... ..++.+.++
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~ 255 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIA 255 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHH
Confidence 3699999997554321 234556655
No 296
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=30.12 E-value=1.1e+02 Score=18.70 Aligned_cols=15 Identities=20% Similarity=-0.026 Sum_probs=5.7
Q ss_pred EEeCCCCCCCHHHHH
Q 039883 39 ITDYCMPGMTGCELI 53 (82)
Q Consensus 39 i~d~~~~~~~~~~~~ 53 (82)
|+|....-.+++.++
T Consensus 3 IiDtD~GiDDa~AL~ 17 (320)
T cd02653 3 IIDCDPGIDDALALL 17 (320)
T ss_pred EEECCCChHHHHHHH
Confidence 344443333333333
No 297
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=30.09 E-value=38 Score=18.76 Aligned_cols=42 Identities=10% Similarity=0.323 Sum_probs=28.8
Q ss_pred HhhccCcc--EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 29 EVHVLAVD--LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 29 ~~~~~~~d--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.+....|+ .+|+.+.+.+.-++++++.|. .....+.-+++..
T Consensus 58 ~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le---~~G~~v~~l~liD 101 (229)
T PF00975_consen 58 AIRARQPEGPYVLAGWSFGGILAFEMARQLE---EAGEEVSRLILID 101 (229)
T ss_dssp HHHHHTSSSSEEEEEETHHHHHHHHHHHHHH---HTT-SESEEEEES
T ss_pred HhhhhCCCCCeeehccCccHHHHHHHHHHHH---HhhhccCceEEec
Confidence 34444444 899999999999999999998 3455554444443
No 298
>PLN02717 uridine nucleosidase
Probab=30.03 E-value=1.2e+02 Score=18.42 Aligned_cols=6 Identities=33% Similarity=0.035 Sum_probs=2.4
Q ss_pred EEeCCC
Q 039883 39 ITDYCM 44 (82)
Q Consensus 39 i~d~~~ 44 (82)
|+|...
T Consensus 4 IiDtD~ 9 (316)
T PLN02717 4 IIDTDP 9 (316)
T ss_pred EEECCC
Confidence 344443
No 299
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=29.90 E-value=65 Score=17.08 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=18.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 35 VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
-.+|++=+. +-.++-+|++..+ ......|||++-...
T Consensus 55 t~~I~ly~E-~~~d~~~f~~~~~---~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 55 TRVIVLYLE-GIGDGRRFLEAAR---RAARRKPVVVLKAGR 91 (138)
T ss_dssp --EEEEEES---S-HHHHHHHHH---HHCCCS-EEEEE---
T ss_pred CCEEEEEcc-CCCCHHHHHHHHH---HHhcCCCEEEEeCCC
Confidence 335555444 3446888998888 223337888887653
No 300
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=29.89 E-value=1.3e+02 Score=18.91 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=29.9
Q ss_pred HhhccCccE-EEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDL-IITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~-vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+....+|++ .++....+..-|.++-..++ ......|+|.+..+
T Consensus 70 a~e~y~P~lI~VvTTCvseIIGDDIeaVvk---E~~~giPVI~V~t~ 113 (352)
T TIGR03282 70 AEEKFKPELIGVVGTCASMIIGEDLKEAVD---EADVDAEVIAVEVH 113 (352)
T ss_pred HHHhcCCCEEEEECCCchhhccCCHHHHHH---HhCCCCCEEEEECC
Confidence 444557885 56677778888888777777 33556799998653
No 301
>COG2380 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.89 E-value=85 Score=19.05 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
-+..++.|+ ...++|++++.+....
T Consensus 202 ~ik~L~~LK----~G~Rtpil~~~s~~t~ 226 (327)
T COG2380 202 DIKKLRFLK----CGERTPILFFRSGDTG 226 (327)
T ss_pred HHHHHHHhh----ccCcCceEEEEeCCCC
Confidence 344556665 6788999999876554
No 302
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.69 E-value=1.3e+02 Score=17.94 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=24.6
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+...+||+|++-... .+...+++.++ ......+++..+.
T Consensus 186 l~~~~~d~v~~~~~~--~~~~~~~~~~~---~~g~~~~~~~~~~ 224 (340)
T cd06349 186 LRDANPDAIILISYY--NDGAPIARQAR---AVGLDIPVVASSS 224 (340)
T ss_pred HHhcCCCEEEEcccc--chHHHHHHHHH---HcCCCCcEEccCC
Confidence 445579988886643 34667788777 4455566665443
No 303
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=29.66 E-value=87 Score=19.82 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=25.6
Q ss_pred HhhccCccEEEEeCCCCCC--------CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 29 EVHVLAVDLIITDYCMPGM--------TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~--------~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.+...+|++||+|....-. .--.|++..| .-...-...||.+.-
T Consensus 189 ~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~r-kla~~l~caIiy~hH 240 (402)
T COG3598 189 ILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTR-KLARNLECAIIYIHH 240 (402)
T ss_pred HHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHH-HHHHhcCCeEEEEec
Confidence 3456689999999865421 2233555554 223455566777653
No 304
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=29.63 E-value=1.4e+02 Score=18.55 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=10.9
Q ss_pred HHhhccCccEEEEe
Q 039883 28 EEVHVLAVDLIITD 41 (82)
Q Consensus 28 ~~~~~~~~d~vi~d 41 (82)
+.+...+||+|++.
T Consensus 98 ~~l~~~kPDvVi~~ 111 (391)
T PRK13608 98 NLLIKEKPDLILLT 111 (391)
T ss_pred HHHHHhCcCEEEEC
Confidence 45667799999984
No 305
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=29.35 E-value=68 Score=19.36 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=25.3
Q ss_pred cCccEEEEeCCCCCCCH----------HH----HHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDYCMPGMTG----------CE----LIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~----------~~----~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
...|+|++-...|...+ .+ ..+.+. ...+...+|++|.+.+
T Consensus 68 ~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~---~~~p~~~iIv~tNP~d 122 (305)
T TIGR01763 68 ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIM---EHSPNPIIVVVSNPLD 122 (305)
T ss_pred CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH---HHCCCeEEEEecCcHH
Confidence 45899999888765432 11 223344 3456777888887755
No 306
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=29.29 E-value=66 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=28.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
-+++|+.+++.....+++.++ ..-+.+-.|++|.+.
T Consensus 26 ~iLiDcGwd~~f~~~~i~~l~---~~i~~iDaILLShpd 61 (764)
T KOG1135|consen 26 RILIDCGWDESFDMSMIKELK---PVIPTIDAILLSHPD 61 (764)
T ss_pred EEEEeCCCcchhccchhhhhh---cccccccEEEecCCC
Confidence 478899999887788888887 677778888888653
No 307
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=29.28 E-value=1e+02 Score=18.70 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=6.8
Q ss_pred EEEeCCCCCCCHHHHHH
Q 039883 38 IITDYCMPGMTGCELIK 54 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~ 54 (82)
||+|......+++.++-
T Consensus 3 viiDtD~g~DD~~Al~~ 19 (306)
T cd02649 3 LIIDTDCGGDDAWALLM 19 (306)
T ss_pred EEEECCCChHHHHHHHH
Confidence 34444443333344433
No 308
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=29.21 E-value=1.1e+02 Score=16.93 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=23.6
Q ss_pred CccEEEEeCCCCCCCHHHH---HHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDYCMPGMTGCEL---IKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~---~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+.+.|+++++.|+++.... ...++ ....|+|....
T Consensus 29 ~~~~vvl~InSpGG~v~~~~~i~~~l~-----~~~kPvia~v~ 66 (187)
T cd07020 29 GADALIIELDTPGGLLDSTREIVQAIL-----ASPVPVVVYVY 66 (187)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH-----hCCCCEEEEEe
Confidence 4688999999999875444 44444 23467777654
No 309
>PLN02366 spermidine synthase
Probab=29.16 E-value=1.4e+02 Score=18.22 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=16.6
Q ss_pred cCccEEEEeCCCCCCCH-----HHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTG-----CELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~-----~~~~~~l~ 57 (82)
.++|+||+|..-|.... .++.+.++
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 36999999987764332 24555555
No 310
>PRK10037 cell division protein; Provisional
Probab=28.97 E-value=1.2e+02 Score=17.44 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=8.5
Q ss_pred cCccEEEEeC
Q 039883 33 LAVDLIITDY 42 (82)
Q Consensus 33 ~~~d~vi~d~ 42 (82)
..||.||+|.
T Consensus 116 ~~yD~iiIDt 125 (250)
T PRK10037 116 GRYQWILLDL 125 (250)
T ss_pred CCCCEEEEEC
Confidence 3699999998
No 311
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.94 E-value=96 Score=16.24 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=21.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..+..+..+. -..+.+++ ...+..-+|++|...+
T Consensus 59 aa~a~v~~~a---~~aI~rIr---~IHPPAHiIVIs~r~d 92 (125)
T COG1844 59 AAVAEVEEPA---SKAIGRIR---KIHPPAHIIVISPRHD 92 (125)
T ss_pred hheeeecCcc---HHHHHHHH---hcCCCceEEEeCCCch
Confidence 4555555555 34466666 5667777888876653
No 312
>PRK11175 universal stress protein UspE; Provisional
Probab=28.69 E-value=97 Score=18.20 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=12.6
Q ss_pred hhccCccEEEEeCCCCC
Q 039883 30 VHVLAVDLIITDYCMPG 46 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~ 46 (82)
.....+|+|++...-..
T Consensus 103 a~~~~~DLiV~G~~~~~ 119 (305)
T PRK11175 103 VIAGGHDLVVKMTHQHD 119 (305)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 34568999999987543
No 313
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=28.64 E-value=1.4e+02 Score=18.04 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=20.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 38 IITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
|++|...|. ...++++... ..+ .+.++-|...+.+
T Consensus 72 V~IDFT~P~-~~~~~l~~~~----~~~-~~lVIGTTGf~~e 106 (266)
T COG0289 72 VLIDFTTPE-ATLENLEFAL----EHG-KPLVIGTTGFTEE 106 (266)
T ss_pred EEEECCCch-hhHHHHHHHH----HcC-CCeEEECCCCCHH
Confidence 567999996 3466666555 233 4455555444443
No 314
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=28.44 E-value=85 Score=15.47 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=22.1
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|.+...+||+|+.-...... ....++ ... +|++.+...
T Consensus 55 E~l~~l~pDlvi~~~~~~~~----~~~~l~---~~~--i~~~~~~~~ 92 (148)
T cd00636 55 EKIAALKPDLIIANGSGLEA----WLDKLS---KIA--IPVVVVDEA 92 (148)
T ss_pred HHHhccCCCEEEEecccchh----HHHHHH---HhC--CCEEEECCC
Confidence 56667799999875543321 444455 111 667766543
No 315
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=28.16 E-value=1.3e+02 Score=17.66 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||.....+ -+....++ . ..+|++++.
T Consensus 85 E~I~al~PDlIi~~~~~~----~~~~~~l~---~--~gi~v~~~~ 120 (289)
T TIGR03659 85 EKIKSLKPTVVLSVTTLE----EDLGPKFK---Q--LGVEATFLN 120 (289)
T ss_pred HHHhccCCcEEEEcCccc----HHHHHHHH---H--cCCcEEEEc
Confidence 678888999999753322 23455555 2 235676653
No 316
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=28.13 E-value=2.1e+02 Score=19.99 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=36.3
Q ss_pred hcCCCceeeecChh--HHh---h-ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 14 SDGSDGFDLSPTDT--EEV---H-VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~---~-~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+...+|++....+ +.+ + ....+++++++... ...++..++ .....+||+++...
T Consensus 25 ~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~Pv~~~~~~ 85 (714)
T PRK15400 25 ALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEIS---KMNENLPLYAFANT 85 (714)
T ss_pred HHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecchh---hHHHHHHHH---HhCCCCCEEEEccc
Confidence 44557777766544 322 2 22577899995432 255888888 67889999998764
No 317
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=27.91 E-value=41 Score=19.48 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=23.7
Q ss_pred ccCccEEEEeCCC---CC----CCHH----HHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCM---PG----MTGC----ELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~---~~----~~~~----~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
...+++|++|.-. .. .+.. ++++.|+ .......+++++++...
T Consensus 138 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~-~la~~~~vtvll~sq~~ 191 (271)
T cd01122 138 SHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLR-GFATEHGIHITLVSHLR 191 (271)
T ss_pred cCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHH-HHHHHhCCEEEEEeccc
Confidence 4479999999821 11 1111 2344454 22345667888887543
No 318
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.88 E-value=88 Score=17.73 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
|.+...+||+||...... +....++
T Consensus 60 E~i~~l~PDlVi~~~~~~-----~~~~~l~ 84 (248)
T cd01138 60 EKVLELKPDLIIVSSKQE-----ENYEKLS 84 (248)
T ss_pred HHHhccCCCEEEeCCccH-----HHHHHHH
Confidence 678888999999865432 1455565
No 319
>PLN02489 homocysteine S-methyltransferase
Probab=27.67 E-value=1.6e+02 Score=18.25 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=21.6
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEE
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
...+|+++++....-......++.++ ......|+++
T Consensus 178 ~~gvD~i~~ET~~~l~E~~a~~~~~~---~~~~~~p~~i 213 (335)
T PLN02489 178 EAGPDLIAFETIPNKLEAQAYVELLE---EENIKIPAWI 213 (335)
T ss_pred hCCCCEEEEeccCChHHHHHHHHHHH---HcCCCCeEEE
Confidence 34589999887665555555666666 3333455433
No 320
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=27.58 E-value=1.7e+02 Score=18.51 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=21.6
Q ss_pred CccEEEEeCCCCCC----CHHHHHHHHHhhcCCCCCccEEE
Q 039883 34 AVDLIITDYCMPGM----TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 34 ~~d~vi~d~~~~~~----~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
.+|+|++....... ..++.++.++ ...+..+|++
T Consensus 33 ~aD~v~intctv~~~a~~~~~~~i~~~k---~~~p~~~vvv 70 (414)
T TIGR01579 33 KADVYIINTCTVTAKADSKARRAIRRAR---RQNPTAKIIV 70 (414)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHHH---hhCCCcEEEE
Confidence 58999988765543 3566777777 4455555444
No 321
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=27.53 E-value=87 Score=15.26 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 47 MTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++..++++.++ .....+||-+.....
T Consensus 1 m~a~eII~~I~---~skKkTPVKvYv~G~ 26 (83)
T PF08503_consen 1 MDAEEIIRYIK---NSKKKTPVKVYVKGD 26 (83)
T ss_dssp THHHHHHHHHH---HCTTB-EEEEEEEES
T ss_pred CCHHHHHHHHH---hCCCCCCEEEEEeee
Confidence 35678888888 677788888776543
No 322
>PLN03007 UDP-glucosyltransferase family protein
Probab=27.43 E-value=1.8e+02 Score=18.94 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=17.7
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
++..+|++||.|..++= +.++.+++.
T Consensus 118 l~~~~~~~IV~D~~~~w--~~~vA~~lg 143 (482)
T PLN03007 118 LETTRPDCLVADMFFPW--ATEAAEKFG 143 (482)
T ss_pred HhcCCCCEEEECCcchh--HHHHHHHhC
Confidence 33447999999998863 555555554
No 323
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=27.32 E-value=1.4e+02 Score=17.90 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=25.0
Q ss_pred cCccEEEEeCCCCCC---CHHHH-----------HHHHHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDYCMPGM---TGCEL-----------IKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~---~~~~~-----------~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
...|+||+-...|.. +-.++ .+.++ ...+...+|++|.+.+
T Consensus 67 ~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~---~~~~~~~vivvsNP~d 121 (306)
T cd05291 67 KDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIK---ASGFDGIFLVASNPVD 121 (306)
T ss_pred CCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HhCCCeEEEEecChHH
Confidence 468999988877643 33332 23444 3466777788776644
No 324
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=27.23 E-value=51 Score=19.53 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHhhccCccEEEEeCCCCC----------CCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPG----------MTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~----------~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
+.+...+||.++++..||. .+..+.++.++-.+..+++ |+++-.
T Consensus 173 diL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGC 226 (275)
T COG1856 173 DILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGC 226 (275)
T ss_pred HHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEee
Confidence 4566778999999987773 2333444444312256666 665543
No 325
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.16 E-value=1.5e+02 Score=19.84 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=8.1
Q ss_pred ccCccEEEEeC
Q 039883 32 VLAVDLIITDY 42 (82)
Q Consensus 32 ~~~~d~vi~d~ 42 (82)
...+|+||+|.
T Consensus 464 ~~gfDVvLiDT 474 (587)
T KOG0781|consen 464 NQGFDVVLIDT 474 (587)
T ss_pred hcCCCEEEEec
Confidence 44688888887
No 326
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=27.03 E-value=1.5e+02 Score=17.70 Aligned_cols=39 Identities=5% Similarity=0.032 Sum_probs=23.9
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
.+...+||+|++...-++ ...+++.++ ...-..+++..+
T Consensus 182 ~l~~~~pd~v~~~~~~~~--~~~~~~~~~---~~G~~~~~~~~~ 220 (333)
T cd06358 182 RIAASGADAVLSTLVGQD--AVAFNRQFA---AAGLRDRILRLS 220 (333)
T ss_pred HHHHcCCCEEEEeCCCCc--hHHHHHHHH---HcCCCccCceee
Confidence 345567999888765544 457788877 333344555443
No 327
>PF03017 Transposase_23: TNP1/EN/SPM transposase; InterPro: IPR004264 Proteins in this group are TNP1/EN/SPM-like transposon proteins with no known function mostly from Arabidopsis thaliana []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.57 E-value=73 Score=15.02 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.2
Q ss_pred cCccEEEEeCCCCCC
Q 039883 33 LAVDLIITDYCMPGM 47 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~ 47 (82)
..++++|+|+..++.
T Consensus 3 ~~~kc~Lld~~~~~~ 17 (73)
T PF03017_consen 3 SGVKCILLDWSGPDD 17 (73)
T ss_pred CCceEEEEEccCCCC
Confidence 357788999888764
No 328
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=26.41 E-value=1.4e+02 Score=17.71 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=20.4
Q ss_pred CccEEEEeCCCCCC-------CH---HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPGM-------TG---CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~~-------~~---~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.||+|+.|+=...+ .+ -.++..|. ...+...||+++...
T Consensus 168 ~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~---~vLp~~sVV~v~~k~ 216 (246)
T PF11599_consen 168 TPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLA---PVLPERSVVAVSDKG 216 (246)
T ss_dssp --SEEEEE--CCCSSSTTS---HHHHHHHHHHHH---CCS-TT-EEEEEESS
T ss_pred CCCEEEecCCCcccccccCCCCCCcHHHHHHHHH---hhCCCCcEEEEecCC
Confidence 59999999843322 22 23556665 556777788887653
No 329
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=26.37 E-value=1.1e+02 Score=16.01 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=26.4
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.++.++++-..-.-.+...-+.... ..+.|+|++++...
T Consensus 58 ~~~~v~~~~~gpG~~n~~~~l~~A~-----~~~~Pll~i~~~~~ 96 (155)
T cd07035 58 GKPGVVLVTSGPGLTNAVTGLANAY-----LDSIPLLVITGQRP 96 (155)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHH-----hhCCCEEEEeCCCc
Confidence 3677888776666666666555444 44789999987644
No 330
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=26.36 E-value=2.3e+02 Score=19.82 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=36.0
Q ss_pred hcCCCceeeecChh--HH---hh-ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 14 SDGSDGFDLSPTDT--EE---VH-VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--~~---~~-~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+...+|++....+ +. ++ ....+++++++... ...++..++ .....+||+++...
T Consensus 25 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~Pv~~~~~~ 85 (713)
T PRK15399 25 ALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDIN---QLNEYLPLYAFINT 85 (713)
T ss_pred HHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHH---HhCCCCCEEEEcCc
Confidence 34456777755533 22 22 22577899996443 255888888 67889999998764
No 331
>PLN02629 powdery mildew resistance 5
Probab=26.23 E-value=80 Score=20.08 Aligned_cols=17 Identities=29% Similarity=0.598 Sum_probs=15.2
Q ss_pred eCCCCCCCHHHHHHHHH
Q 039883 41 DYCMPGMTGCELIKKIK 57 (82)
Q Consensus 41 d~~~~~~~~~~~~~~l~ 57 (82)
++.+|..++.++++.+|
T Consensus 103 gC~LPRFda~~fLe~~R 119 (387)
T PLN02629 103 NCELPRFNGLEFLLKMK 119 (387)
T ss_pred CCCCCCcCHHHHHHHhc
Confidence 56789999999999998
No 332
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.10 E-value=1.5e+02 Score=17.48 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=21.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEE
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+|++....-+.+|+-+.+.|. .....+.+++
T Consensus 64 ~VlcG~GNNGGDGlv~AR~L~---~~G~~V~v~~ 94 (246)
T PLN03050 64 LLVCGPGNNGGDGLVAARHLA---HFGYEVTVCY 94 (246)
T ss_pred EEEECCCCCchhHHHHHHHHH---HCCCeEEEEE
Confidence 567788888888998888887 3444444443
No 333
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.00 E-value=75 Score=15.03 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=7.0
Q ss_pred CCCccEEEEeeC
Q 039883 63 FREIPTVIISSE 74 (82)
Q Consensus 63 ~~~~~vi~ls~~ 74 (82)
.+..+||+....
T Consensus 54 ~~~~~ivv~c~~ 65 (96)
T cd01529 54 GRATRYVLTCDG 65 (96)
T ss_pred CCCCCEEEEeCC
Confidence 345567777643
No 334
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=25.85 E-value=1.6e+02 Score=18.28 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.9
Q ss_pred ccEEEEeCCCCCC-CHHHHHHHHH
Q 039883 35 VDLIITDYCMPGM-TGCELIKKIK 57 (82)
Q Consensus 35 ~d~vi~d~~~~~~-~~~~~~~~l~ 57 (82)
+|+|++|...... ..++.+++++
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~ 132 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIK 132 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHH
Confidence 7999999977643 4567788888
No 335
>PRK05973 replicative DNA helicase; Provisional
Probab=25.59 E-value=1.5e+02 Score=17.39 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=24.5
Q ss_pred cCccEEEEeCCCC---CCCHH---HHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 33 LAVDLIITDYCMP---GMTGC---ELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 33 ~~~d~vi~d~~~~---~~~~~---~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.++++|++|.-.. ..+.. +.++.|+ .......+++|+++.-...
T Consensus 146 ~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk-~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 146 PRGTLVVIDYLQLLDQRREKPDLSVQVRALK-SFARERGLIIVFISQIDRS 195 (237)
T ss_pred hCCCEEEEEcHHHHhhcccchhHHHHHHHHH-HHHHhCCCeEEEEecCccc
Confidence 3689999998321 11111 2233344 2234677888888865443
No 336
>PRK11778 putative inner membrane peptidase; Provisional
Probab=25.56 E-value=1.8e+02 Score=18.17 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=22.2
Q ss_pred CccEEEEeCCCCCCCH--H----HHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDYCMPGMTG--C----ELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~--~----~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+.+.|+++++.|++.. . ..+.++| ....|+++...
T Consensus 122 ~~~aVvLridSpGG~v~~s~~a~~~l~~lr-----~~~kpVva~v~ 162 (330)
T PRK11778 122 PGDEVLLRLESPGGVVHGYGLAASQLQRLR-----DAGIPLTVAVD 162 (330)
T ss_pred CCCeEEEEEeCCCCchhHHHHHHHHHHHHH-----hcCCCEEEEEC
Confidence 3488999999999863 2 2233444 23467777543
No 337
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.45 E-value=1.4e+02 Score=16.84 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=26.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||.||+...-+..- ..+++.++ ...+||+.+-..
T Consensus 53 ~~~~d~Iiv~~~~~~~~-~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSL-APFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HTTESEEEEESSSTTTT-HHHHHHHH-----HTTSEEEEESST
T ss_pred HhcCCEEEecCCCHHHH-HHHHHHHh-----hcCceEEEEecc
Confidence 34799999887777533 47777777 345788887654
No 338
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=25.35 E-value=1e+02 Score=17.87 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=6.9
Q ss_pred CccEEEEeC
Q 039883 34 AVDLIITDY 42 (82)
Q Consensus 34 ~~d~vi~d~ 42 (82)
+||.||+|+
T Consensus 115 ~yD~vIIDt 123 (267)
T cd02032 115 EYDVILFDV 123 (267)
T ss_pred cCCEEEEeC
Confidence 578888886
No 339
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=25.33 E-value=1.2e+02 Score=20.64 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=32.0
Q ss_pred HHhhccCccEEEEeCCC-------CCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 28 EEVHVLAVDLIITDYCM-------PGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+.+...+..++.+|--. .=...+.-+..++ ...+++|++++|+..+..
T Consensus 125 ~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~---~~~~~~p~~AlTATA~~~ 179 (590)
T COG0514 125 ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR---AGLPNPPVLALTATATPR 179 (590)
T ss_pred HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH---hhCCCCCEEEEeCCCChH
Confidence 45555567777776422 2234566677777 577899999999887654
No 340
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=25.26 E-value=1.7e+02 Score=17.94 Aligned_cols=39 Identities=8% Similarity=-0.135 Sum_probs=22.6
Q ss_pred ccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
++-+++-+..+|.+ -.+.++..+ ....++|.+|+..+..
T Consensus 92 ~~~lvI~iS~SGeT~e~i~al~~ak-----~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 92 DRCAVIGVSDYGKTEEVIKALELGR-----ACGALTAAFTKRADSP 132 (340)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-----HcCCeEEEEECCCCCh
Confidence 44344445555533 344555555 2357999999876654
No 341
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.15 E-value=66 Score=18.74 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.1
Q ss_pred hhccCccEEEEeCCCC
Q 039883 30 VHVLAVDLIITDYCMP 45 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~ 45 (82)
++..+||+||+|.--.
T Consensus 120 l~~~~yD~VVvDtpPt 135 (254)
T cd00550 120 IDEAEYDVVVFDTAPT 135 (254)
T ss_pred HhcCCCCEEEECCCCc
Confidence 3455799999998663
No 342
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.12 E-value=1.4e+02 Score=16.87 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=23.9
Q ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDYCMPGMTG---CELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~---~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+|+++++|--..+.+. ..+.+.++ .......+|++|.
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~---~~~~~~~~iivs~ 188 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIK---ERTKNAQFIVISL 188 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHH---HHcCCCEEEEEEC
Confidence 4799999998887764 33445555 2223456777774
No 343
>PRK15005 universal stress protein F; Provisional
Probab=25.09 E-value=1.1e+02 Score=15.53 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=11.0
Q ss_pred hhccCccEEEEeCCC
Q 039883 30 VHVLAVDLIITDYCM 44 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~ 44 (82)
.....+|+|++..+.
T Consensus 103 a~~~~~DLIV~Gs~~ 117 (144)
T PRK15005 103 AKKIPADMIIIASHR 117 (144)
T ss_pred HHHcCCCEEEEeCCC
Confidence 345589999998764
No 344
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=25.00 E-value=1.2e+02 Score=15.92 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=22.9
Q ss_pred CccEEEEeCCCCCCCHHHHH-----HHHHhhcCCCCCccEEEEeeCCch
Q 039883 34 AVDLIITDYCMPGMTGCELI-----KKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~-----~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..|++|+-+.+.+...++-+ ..++ ...+..|+|++....|.
T Consensus 69 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~---~~~~~~piilv~nK~Dl 114 (174)
T smart00174 69 DTDVFLICFSVDSPASFENVKEKWYPEVK---HFCPNTPIILVGTKLDL 114 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH---hhCCCCCEEEEecChhh
Confidence 35666655545444444433 2333 33567899888776553
No 345
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=24.75 E-value=1.4e+02 Score=17.58 Aligned_cols=19 Identities=16% Similarity=-0.026 Sum_probs=15.0
Q ss_pred cCccEEEEeCCCCCCCHHH
Q 039883 33 LAVDLIITDYCMPGMTGCE 51 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~ 51 (82)
.+||-+++|+.-++..+++
T Consensus 100 e~PD~~vfDLDP~~~~~f~ 118 (231)
T cd04863 100 GPPDRLVFDLDPGEPAGLV 118 (231)
T ss_pred CCCCEEEEECCCCCCCCHH
Confidence 5799999999998755444
No 346
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=24.74 E-value=56 Score=19.04 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=23.6
Q ss_pred CceeeecC-hhHHhhc--c-CccEEEEeCCCCCCCH-----HHHHHHHH
Q 039883 18 DGFDLSPT-DTEEVHV--L-AVDLIITDYCMPGMTG-----CELIKKIK 57 (82)
Q Consensus 18 ~~~~~~~~-~~~~~~~--~-~~d~vi~d~~~~~~~~-----~~~~~~l~ 57 (82)
..+++... +...++. . ++|+|++|..-|...+ .++.+.++
T Consensus 130 ~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 130 PRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCK 178 (246)
T ss_dssp TTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHH
T ss_pred CceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHH
Confidence 34455333 3344443 2 6999999999876544 35666665
No 347
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.46 E-value=87 Score=14.24 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=12.9
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
.-.+.++.++ ....++|.+|
T Consensus 62 ~~~~~~~~a~-----~~g~~ii~it 81 (87)
T cd04795 62 ELLAALEIAK-----ELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHH-----HcCCeEEEEe
Confidence 3455666666 3357788887
No 348
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=24.35 E-value=1.1e+02 Score=15.54 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=23.9
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.....++|+|++..+ .. +...+.-.-+.--.....||+++-..
T Consensus 98 ~a~~~~~DLIV~Gs~-~~--~~~~lgSva~~v~~~a~~pVLvv~~~ 140 (144)
T PRK15118 98 AIKKYDMDLVVCGHH-QD--FWSKLMSSARQLINTVHVDMLIVPLR 140 (144)
T ss_pred HHHHhCCCEEEEeCc-cc--HHHHHHHHHHHHHhhCCCCEEEecCC
Confidence 344558999999888 32 33322111111124667788888643
No 349
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.29 E-value=1.2e+02 Score=19.13 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=24.0
Q ss_pred hhccCccEEEE-eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 30 VHVLAVDLIIT-DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 30 ~~~~~~d~vi~-d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.+..+|++|.+ -..+++.-|.++-..+++. ......|||.+..++
T Consensus 80 ~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~-~~~~~~pVi~v~tpg 125 (407)
T TIGR01279 80 KRDRNPSVIFLLSSCTPEVIKMDLEGLAERL-STNFGVPVLFAPASG 125 (407)
T ss_pred HhhcCCCEEEEECCchHHHHHhhHHHHHHHH-HHhhCCCEEEeeCCC
Confidence 44557886544 5555666666554444311 112456788776553
No 350
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=24.28 E-value=1e+02 Score=14.93 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=13.1
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
...++++.++ . ...+++++|+..
T Consensus 28 ~~~~~l~~l~---~--~g~~i~ivS~~~ 50 (139)
T cd01427 28 GVKEALKELK---E--KGIKLALATNKS 50 (139)
T ss_pred CHHHHHHHHH---H--CCCeEEEEeCch
Confidence 3456677666 1 235667777543
No 351
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=24.09 E-value=1.6e+02 Score=17.22 Aligned_cols=38 Identities=8% Similarity=-0.134 Sum_probs=24.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..||+|++-.... .+..+++.++ ......|++..+...
T Consensus 187 ~~pdaIi~~~~~~--~~~~~~~~l~---~~g~~~p~~~~~~~~ 224 (312)
T cd06333 187 ARPDAVLIWGSGT--PAALPAKNLR---ERGYKGPIYQTHGVA 224 (312)
T ss_pred CCCCEEEEecCCc--HHHHHHHHHH---HcCCCCCEEeecCcC
Confidence 3689988865433 3556788888 445567777654433
No 352
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=23.98 E-value=2.2e+02 Score=18.66 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=28.6
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.++...+.++++++-|++-.....+-++ . -....+||+....+.
T Consensus 52 A~~~~a~~vvl~ldTPGGl~~sm~~iv~-~-i~~s~vPV~~yv~p~ 95 (436)
T COG1030 52 AEEENAAAVVLELDTPGGLLDSMRQIVR-A-ILNSPVPVIGYVVPD 95 (436)
T ss_pred HHhCCCcEEEEEecCCCchHHHHHHHHH-H-HHcCCCCEEEEEcCC
Confidence 3455789999999999965444444333 1 235667877766554
No 353
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=23.93 E-value=2e+02 Score=18.30 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=27.6
Q ss_pred HHhhccCccEEEE--eCCCC--CCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 28 EEVHVLAVDLIIT--DYCMP--GMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 28 ~~~~~~~~d~vi~--d~~~~--~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..++.++||+|++ |.-+. -.+....+.+.- +......+|..++-+..+.
T Consensus 94 rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAv-aP~I~~~IPwA~~lGNHDd 146 (379)
T KOG1432|consen 94 RVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAV-APAIDRKIPWAAVLGNHDD 146 (379)
T ss_pred HHHhccCCCEEEEeCCcccccccHhHHHHHHHHh-hhHhhcCCCeEEEeccccc
Confidence 5677889998776 33333 122333332222 3345667888887766554
No 354
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.83 E-value=1.3e+02 Score=17.66 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHH
Q 039883 35 VDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
..++++|..+|+.+-.++.+.|.
T Consensus 197 aElyF~d~lWPdF~~~dl~~ai~ 219 (230)
T PRK14837 197 CEFIFSNVLWPEYYVNHYSKDLE 219 (230)
T ss_pred eEEEECCCCCccCCHHHHHHHHH
Confidence 45777999999999999999887
No 355
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=23.82 E-value=1.8e+02 Score=17.75 Aligned_cols=19 Identities=21% Similarity=-0.092 Sum_probs=7.6
Q ss_pred EEeCCCCCCCHHHHHHHHH
Q 039883 39 ITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 39 i~d~~~~~~~~~~~~~~l~ 57 (82)
|+|....-.+++.++-.++
T Consensus 4 IiDtD~g~DDa~Al~~al~ 22 (312)
T cd02647 4 IFDHDGNVDDLVALLLLLK 22 (312)
T ss_pred EEeCCCCchHHHHHHHHhh
Confidence 4444433333344443333
No 356
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=23.73 E-value=1e+02 Score=14.90 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHhhccCccEEEEeCCC-CCCCH---HHHHHHHHhhcCCCCCccEEEE
Q 039883 28 EEVHVLAVDLIITDYCM-PGMTG---CELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~-~~~~~---~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+.+....+|+|++...- +.... ......+- .....||+++
T Consensus 96 ~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~----~~~~~pVlvv 139 (140)
T PF00582_consen 96 EFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLL----RHAPCPVLVV 139 (140)
T ss_dssp HHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHH----HHTSSEEEEE
T ss_pred hccccccceeEEEeccCCCCccCCCcCCHHHHHH----HcCCCCEEEe
Confidence 45566789999998866 33332 23333333 1344677765
No 357
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=23.69 E-value=1.4e+02 Score=16.18 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=22.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
+.+...+||+|.++-... .+--++...+.
T Consensus 80 ~~i~~~k~Div~lG~D~~-~d~~~l~~~~~ 108 (140)
T COG0615 80 EDIEEYKPDIVVLGDDQK-FDEDDLKYELV 108 (140)
T ss_pred HHHHHhCCCEEEECCCCc-CChHHHHHHHH
Confidence 567888999999988777 56666777776
No 358
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=23.67 E-value=1.7e+02 Score=17.40 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=19.1
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+....||+|++- ..+.....+++.++
T Consensus 181 ~l~~~~pd~v~~~--~~~~~~~~~~~~~~ 207 (333)
T cd06359 181 QIRAAKPDAVFVF--LPGGMGVNFVKQYR 207 (333)
T ss_pred HHHhCCCCEEEEE--ccCccHHHHHHHHH
Confidence 3455679999873 34456778888888
No 359
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=23.67 E-value=1.2e+02 Score=17.99 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=15.5
Q ss_pred CCH-HHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 47 MTG-CELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 47 ~~~-~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+| -++.+.+. ...+|++++|+.-.
T Consensus 92 Rdg~~~~f~~L~-----~~~IP~lIFSAGlg 117 (246)
T PF05822_consen 92 RDGVEEFFDKLE-----EHNIPLLIFSAGLG 117 (246)
T ss_dssp -BTHHHHHHHHH-----CTT--EEEEEEEEH
T ss_pred hcCHHHHHHHHH-----hcCCCEEEEeCCcH
Confidence 344 45777777 66799999997643
No 360
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.65 E-value=1.6e+02 Score=16.98 Aligned_cols=18 Identities=11% Similarity=-0.121 Sum_probs=13.7
Q ss_pred CCCccEEEEeeCCchhhh
Q 039883 63 FREIPTVIISSENILARI 80 (82)
Q Consensus 63 ~~~~~vi~ls~~~~~~~~ 80 (82)
....++|.+|+..++...
T Consensus 111 ~~g~~liaiT~~~~SsLa 128 (202)
T COG0794 111 RLGAKLIAITSNPDSSLA 128 (202)
T ss_pred HcCCcEEEEeCCCCChHH
Confidence 556799999998776543
No 361
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=23.61 E-value=68 Score=18.27 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=17.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 38 IITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 38 vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
||+|+.+.+ ...+| ...+....|++.+++-.+
T Consensus 96 vildId~qG------a~qvk---~~~p~~v~IFi~pPs~ee 127 (191)
T COG0194 96 VILDIDVQG------ALQVK---KKMPNAVSIFILPPSLEE 127 (191)
T ss_pred EEEEEehHH------HHHHH---HhCCCeEEEEEcCCCHHH
Confidence 455555443 44455 456667777777665443
No 362
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=23.55 E-value=87 Score=17.69 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.3
Q ss_pred hhccCccEEEEeCCCCCC
Q 039883 30 VHVLAVDLIITDYCMPGM 47 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~ 47 (82)
.+..+||++=+|..+.+.
T Consensus 69 Ak~vkPDViHLDStlGGI 86 (227)
T PF13680_consen 69 AKKVKPDVIHLDSTLGGI 86 (227)
T ss_pred HhhcCCCEEEeccccCcE
Confidence 445689999999988764
No 363
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=23.53 E-value=1.6e+02 Score=18.52 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=27.1
Q ss_pred CccEEEEe-CCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 34 AVDLIITD-YCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 34 ~~d~vi~d-~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
-|.++++| ++|-+...+..+.+.- ..+-.|++++.++..
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kal----ES~iaPivifAsNrG 335 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKAL----ESPIAPIVIFASNRG 335 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHh----cCCCCceEEEecCCc
Confidence 37877765 6888888777765544 356678888876644
No 364
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.49 E-value=1.2e+02 Score=18.92 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=25.3
Q ss_pred HhhccCccE-EEEeCCCCCCCHHHH---HHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDL-IITDYCMPGMTGCEL---IKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~-vi~d~~~~~~~~~~~---~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+....+|++ +|+-...++.-|.++ ++.++ . ....|+|.+..+
T Consensus 82 ~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~---~-~~~~~vi~v~t~ 127 (406)
T cd01967 82 AYERFPPKAIFVYSTCPTGLIGDDIEAVAKEAS---K-ELGIPVIPVNCE 127 (406)
T ss_pred HHHhCCCCEEEEECCCchhhhccCHHHHHHHHH---H-hhCCCEEEEeCC
Confidence 344557885 556666676666555 44444 2 234788888765
No 365
>PRK00208 thiG thiazole synthase; Reviewed
Probab=23.41 E-value=1.8e+02 Score=17.45 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=33.8
Q ss_pred hcCCCceeee-cChh-----HHhhccCccEEEEeCCCC---------CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 14 SDGSDGFDLS-PTDT-----EEVHVLAVDLIITDYCMP---------GMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 14 ~~~~~~~~~~-~~~~-----~~~~~~~~d~vi~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+...+|.+. .+.+ ..+....+++| || +..-.++++.++ .. ..+|||+=.+-..++
T Consensus 118 ~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~v-----mPlg~pIGsg~gi~~~~~i~~i~---e~-~~vpVIveaGI~tpe 188 (250)
T PRK00208 118 ILVKEGFVVLPYCTDDPVLAKRLEEAGCAAV-----MPLGAPIGSGLGLLNPYNLRIII---EQ-ADVPVIVDAGIGTPS 188 (250)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEe-----CCCCcCCCCCCCCCCHHHHHHHH---Hh-cCCeEEEeCCCCCHH
Confidence 3445677776 3433 44555678877 44 222266788887 33 468888776655554
Q ss_pred hh
Q 039883 79 RI 80 (82)
Q Consensus 79 ~~ 80 (82)
.+
T Consensus 189 da 190 (250)
T PRK00208 189 DA 190 (250)
T ss_pred HH
Confidence 43
No 366
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.36 E-value=1.1e+02 Score=19.25 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=23.1
Q ss_pred HhhccCccEEE-EeCCCCCCCHHHH---HHHHHhhcCCCCCccEEEEeeCC
Q 039883 29 EVHVLAVDLII-TDYCMPGMTGCEL---IKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 29 ~~~~~~~d~vi-~d~~~~~~~~~~~---~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+.+..+|++|. +....++.-|.++ ++.++ .....|||.+..+.
T Consensus 82 i~~~~~P~~I~V~sTCv~e~IGDDi~~v~~~~~----~~~~~pvi~v~t~g 128 (396)
T cd01979 82 IKRDRNPSVIFLIGSCTTEVIKMDLEGAAPRLS----AEIGVPILVASASG 128 (396)
T ss_pred HHHhcCCCEEEEECCCHHHHHhcCHHHHHHHHh----hcCCCcEEEeeCCC
Confidence 34455677544 4555555555444 44444 22467788776543
No 367
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.33 E-value=1.7e+02 Score=17.36 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=11.1
Q ss_pred hhccCccEEEEeCCCC
Q 039883 30 VHVLAVDLIITDYCMP 45 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~ 45 (82)
++..+||+|+.....+
T Consensus 85 i~~~~pDvI~~~~~~~ 100 (350)
T cd03785 85 LKKFKPDVVVGFGGYV 100 (350)
T ss_pred HHhcCCCEEEECCCCc
Confidence 4556899999865444
No 368
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=23.28 E-value=1.8e+02 Score=17.42 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=33.8
Q ss_pred hcCCCceeee-cChh-----HHhhccCccEEEEeCCCC---------CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 14 SDGSDGFDLS-PTDT-----EEVHVLAVDLIITDYCMP---------GMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 14 ~~~~~~~~~~-~~~~-----~~~~~~~~d~vi~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+...+|.+. .+.+ ..+....+++| || +..-.++++.++ .. ..+|||+=.+-..++
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~v-----mPlg~pIGsg~Gi~~~~~I~~I~---e~-~~vpVI~egGI~tpe 188 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLEDAGCAAV-----MPLGSPIGSGQGLLNPYNLRIII---ER-ADVPVIVDAGIGTPS 188 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEe-----CCCCcCCCCCCCCCCHHHHHHHH---Hh-CCCcEEEeCCCCCHH
Confidence 4445677776 3333 34555577777 44 222267888888 33 468888766555554
Q ss_pred hh
Q 039883 79 RI 80 (82)
Q Consensus 79 ~~ 80 (82)
.+
T Consensus 189 da 190 (248)
T cd04728 189 DA 190 (248)
T ss_pred HH
Confidence 43
No 369
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.26 E-value=2e+02 Score=18.00 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=23.7
Q ss_pred CccEEEEeCCCCCCC------HHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDYCMPGMT------GCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~------~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.|++++||-=+...+ -+..+++|+ ...++||+-+|-
T Consensus 146 ~P~LLLmDEPLaSLD~~RK~EilpylERL~----~e~~IPIlYVSH 187 (352)
T COG4148 146 APELLLMDEPLASLDLPRKREILPYLERLR----DEINIPILYVSH 187 (352)
T ss_pred CCCeeeecCchhhcccchhhHHHHHHHHHH----HhcCCCEEEEec
Confidence 699999987444322 234455555 466789888874
No 370
>PHA02546 47 endonuclease subunit; Provisional
Probab=23.03 E-value=1.9e+02 Score=17.74 Aligned_cols=46 Identities=4% Similarity=-0.020 Sum_probs=24.8
Q ss_pred hhccCccEEEEeCCCC------CCCHHHHHHH--HHhhcCCCCCccEEEEeeCCch
Q 039883 30 VHVLAVDLIITDYCMP------GMTGCELIKK--IKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~------~~~~~~~~~~--l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+...+||+|++-=.+- ......+++. ++ . -....+|++++.++.|.
T Consensus 35 a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~-~-L~~~gi~v~~I~GNHD~ 88 (340)
T PHA02546 35 SKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFD-L-LKEAGITLHVLVGNHDM 88 (340)
T ss_pred HHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHH-H-HHHCCCeEEEEccCCCc
Confidence 4456899988722221 2122334433 21 0 11335899999988774
No 371
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=22.99 E-value=1.5e+02 Score=17.62 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHH
Q 039883 35 VDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
-.+.++|..+|+..-.++.+.++
T Consensus 211 sElyF~d~lWPdf~~~d~~~ai~ 233 (245)
T COG0020 211 SELYFTDVLWPDFRREDLLRAIR 233 (245)
T ss_pred CeEEeccccCCCCCHHHHHHHHH
Confidence 35677999999999999999887
No 372
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=22.95 E-value=1.5e+02 Score=16.58 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=22.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhh-cCCCCCccEEEEeeCCch
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQ-SFTFREIPTVIISSENIL 77 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~-~~~~~~~~vi~ls~~~~~ 77 (82)
..+|+||+|.---...-.+.+.+++.- ....+.-..+++++....
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 458999999854333334444444310 012344455555555443
No 373
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=22.92 E-value=2.1e+02 Score=18.12 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=25.4
Q ss_pred ccCccEEEEeCC--C--CCC--CH----HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYC--M--PGM--TG----CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~--~--~~~--~~----~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
...+++|++|.- + +.. +- ..+.+.|+ .-.....+|||+++.-+
T Consensus 303 ~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk-~lA~e~~i~vi~lsqln 355 (434)
T TIGR00665 303 EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLK-ALAKELNVPVIALSQLS 355 (434)
T ss_pred hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHH-HHHHHhCCeEEEEeccC
Confidence 346999999983 2 111 11 12335555 33356788999999643
No 374
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.91 E-value=1.6e+02 Score=16.85 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=17.1
Q ss_pred CccEEEEeCCCCCCCH---HHHHHHHH
Q 039883 34 AVDLIITDYCMPGMTG---CELIKKIK 57 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~---~~~~~~l~ 57 (82)
+|+++|+|-=..+.|. ..+.+.++
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~l~~~l~ 191 (251)
T PRK14249 165 EPEVILMDEPCSALDPVSTMRIEELMQ 191 (251)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 7999999987777664 33445555
No 375
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.77 E-value=1.4e+02 Score=16.08 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..++...++.--.|+.+......++.+.+. .......+|.|++-+.
T Consensus 24 ~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g-~~~~~~tvPqVFI~G~ 69 (147)
T cd03031 24 AILESFRVKFDERDVSMDSGFREELRELLG-AELKAVSLPRVFVDGR 69 (147)
T ss_pred HHHHHCCCcEEEEECCCCHHHHHHHHHHhC-CCCCCCCCCEEEECCE
Confidence 556667777777788764322222222222 1112467888887543
No 376
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.69 E-value=1.8e+02 Score=17.29 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=23.8
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
...||.|++-... ..+..+++.++ ......|+++....
T Consensus 186 ~~~pdaV~~~~~~--~~a~~~~~~~~---~~G~~~~~~~~~~~ 223 (341)
T cd06341 186 AAGADAIITVLDA--AVCASVLKAVR---AAGLTPKVVLSGTC 223 (341)
T ss_pred hcCCCEEEEecCh--HHHHHHHHHHH---HcCCCCCEEEecCC
Confidence 3479988875432 25778888888 44555666555433
No 377
>PRK09165 replicative DNA helicase; Provisional
Probab=22.46 E-value=2.1e+02 Score=18.80 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=26.6
Q ss_pred cCccEEEEeCC--C--CC----CCH----HHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDYC--M--PG----MTG----CELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~~--~--~~----~~~----~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..+++|++|.- + +. .+. -.+.+.|+ .......+|||+++.-+.
T Consensus 340 ~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK-~lAkel~ipVi~lsQLnR 394 (497)
T PRK09165 340 HGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLK-ALAKELNIPVIALSQLSR 394 (497)
T ss_pred cCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHH-HHHHHhCCeEEEeecccc
Confidence 46999999982 1 21 111 22445565 334567899999997544
No 378
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=22.26 E-value=1e+02 Score=14.37 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=18.9
Q ss_pred eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 41 DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 41 d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+.+|+ -++-++|+........+-+.++++-+.
T Consensus 28 DlklP~---~elg~~I~~~f~~gk~~~vtV~samGe 60 (69)
T cd04468 28 DLKLPE---GELGKEIREKFDEGKDVLVTVLSAMGE 60 (69)
T ss_pred CCcCCc---HHHHHHHHHHHhCCCcEEEEEEccCCc
Confidence 566776 356667763323456666666665443
No 379
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=22.21 E-value=1.8e+02 Score=17.13 Aligned_cols=13 Identities=0% Similarity=-0.077 Sum_probs=9.5
Q ss_pred CccEEEEeeCCch
Q 039883 65 EIPTVIISSENIL 77 (82)
Q Consensus 65 ~~~vi~ls~~~~~ 77 (82)
..|++.+.++.|.
T Consensus 84 ~~pv~~VpGNHDi 96 (257)
T cd08163 84 RKMVESLPGNHDI 96 (257)
T ss_pred cceEEEeCCCccc
Confidence 4688888887663
No 380
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=22.18 E-value=1.5e+02 Score=16.27 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=23.2
Q ss_pred HhhccCccEEEE--eCCCCCCC---HHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 29 EVHVLAVDLIIT--DYCMPGMT---GCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 29 ~~~~~~~d~vi~--d~~~~~~~---~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+...+||++++ |+.-.... ..+.+..+. ..-....+|+.++.++.+
T Consensus 36 ~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~-~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 36 VLDAEKPDLVVLTGDLITGENTNDNSTSALDKAV-SPMIDRKIPWAATFGNHD 87 (199)
T ss_pred HHhhcCCCEEEECCccccCCCCchHHHHHHHHHH-HHHHHcCCCEEEECccCC
Confidence 355567998877 44333222 233333332 101123578877776544
No 381
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.12 E-value=1.7e+02 Score=17.45 Aligned_cols=19 Identities=16% Similarity=-0.076 Sum_probs=14.9
Q ss_pred cCccEEEEeCCCCCCCHHH
Q 039883 33 LAVDLIITDYCMPGMTGCE 51 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~ 51 (82)
.+||-+++|+.-++..+++
T Consensus 112 ~~PD~lvfDLDP~~~~~f~ 130 (245)
T TIGR02778 112 EKPDRIVFDLDPGPGVAWK 130 (245)
T ss_pred CCCCEEEEECCCCCCCCHH
Confidence 3699999999998765544
No 382
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=22.11 E-value=1.7e+02 Score=16.60 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred hhccCccEEEEeCCCCC---------CCHHHHHHHHH
Q 039883 30 VHVLAVDLIITDYCMPG---------MTGCELIKKIK 57 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~---------~~~~~~~~~l~ 57 (82)
.....+|.|++|+.... .+..+++..++
T Consensus 17 a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~ 53 (221)
T PF03328_consen 17 AAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIR 53 (221)
T ss_dssp HHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhc
Confidence 44558999999998876 44455555555
No 383
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=1.7e+02 Score=16.81 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=25.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+|+|.-..-+.||+-..+.|+ .....+.++.+...
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~---~~G~~V~v~~~~~~ 87 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLK---AAGYAVTVLLLGDP 87 (203)
T ss_pred EEEECCCCccHHHHHHHHHHH---hCCCceEEEEeCCC
Confidence 577788888889999999998 45556666665543
No 384
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=22.03 E-value=1.4e+02 Score=15.67 Aligned_cols=12 Identities=25% Similarity=0.027 Sum_probs=6.8
Q ss_pred CccEEEEeeCCc
Q 039883 65 EIPTVIISSENI 76 (82)
Q Consensus 65 ~~~vi~ls~~~~ 76 (82)
..+++.+|+...
T Consensus 59 ~~~ii~vSa~~~ 70 (155)
T cd01849 59 PTIPFKISATNG 70 (155)
T ss_pred CceEEEEeccCC
Confidence 345666666543
No 385
>PLN02591 tryptophan synthase
Probab=22.01 E-value=1.9e+02 Score=17.17 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.+++++.+| . ...+|+++++-.+
T Consensus 66 ~~~~~~~~r---~-~~~~p~ilm~Y~N 88 (250)
T PLN02591 66 VISMLKEVA---P-QLSCPIVLFTYYN 88 (250)
T ss_pred HHHHHHHHh---c-CCCCCEEEEeccc
Confidence 455556665 2 3567988887654
No 386
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=21.93 E-value=2.2e+02 Score=18.05 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+.+...+||+|+.-+. +.+...|.+.++..--....+||+-++-
T Consensus 183 ~~I~~~~Pd~V~stlv--G~s~~aF~r~~~~aG~~~~~~Pi~S~~~ 226 (363)
T PF13433_consen 183 AEIKAAKPDFVFSTLV--GDSNVAFYRAYAAAGLDPERIPIASLST 226 (363)
T ss_dssp HHHHHHT-SEEEEE----TTCHHHHHHHHHHHH-SSS---EEESS-
T ss_pred HHHHhhCCCEEEEeCc--CCcHHHHHHHHHHcCCCcccCeEEEEec
Confidence 4466679998886554 4567889998872212333567776654
No 387
>PRK03612 spermidine synthase; Provisional
Probab=21.83 E-value=2.5e+02 Score=18.57 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=16.4
Q ss_pred cCccEEEEeCCCCCCCH------HHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTG------CELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~------~~~~~~l~ 57 (82)
.++|+|++|...|...+ .++.+.++
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~ 402 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLK 402 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHH
Confidence 47999999987665332 24555555
No 388
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.74 E-value=1.1e+02 Score=19.63 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=26.2
Q ss_pred HHhhccCccE-EEEeCCCCCCCHHHH---HHHHHhhcCCCCCccEEEEeeCC
Q 039883 28 EEVHVLAVDL-IITDYCMPGMTGCEL---IKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 28 ~~~~~~~~d~-vi~d~~~~~~~~~~~---~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++....+|++ +|+....++.-|.++ ++.++ .....||+.++.++
T Consensus 115 e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~----~~~~~~vi~v~t~g 162 (456)
T TIGR01283 115 EIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAA----EKTGIPVIPVDSEG 162 (456)
T ss_pred HHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHH----HHhCCCEEEEECCC
Confidence 3445557885 455666666666554 44444 22367888887654
No 389
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.63 E-value=1.7e+02 Score=17.90 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=10.9
Q ss_pred HHhhccCccEEEEe
Q 039883 28 EEVHVLAVDLIITD 41 (82)
Q Consensus 28 ~~~~~~~~d~vi~d 41 (82)
+.++..+||+|+++
T Consensus 98 ~~l~~~~pD~Vi~~ 111 (380)
T PRK13609 98 LLLQAEKPDIVINT 111 (380)
T ss_pred HHHHHhCcCEEEEc
Confidence 45667789999985
No 390
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=21.51 E-value=1.8e+02 Score=17.13 Aligned_cols=19 Identities=16% Similarity=-0.117 Sum_probs=14.7
Q ss_pred cCccEEEEeCCCCCCCHHH
Q 039883 33 LAVDLIITDYCMPGMTGCE 51 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~ 51 (82)
..||-+++|+.-++..+++
T Consensus 96 e~PD~lvfDLDP~~~~~f~ 114 (227)
T cd04862 96 ERPDRIVFDLDPGPGVPWK 114 (227)
T ss_pred CCCCEEEEECCCCCCCCHH
Confidence 3699999999998754444
No 391
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=21.42 E-value=1.2e+02 Score=17.60 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=14.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHH
Q 039883 37 LIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~ 57 (82)
++++...||+..-..+++..+
T Consensus 93 ~vFVSfSMP~~sLk~Ll~qa~ 113 (212)
T PRK13730 93 LYFVSFSIPEEGLKRMLGETR 113 (212)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 788899999865555555444
No 392
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=21.38 E-value=2.6e+02 Score=18.64 Aligned_cols=42 Identities=10% Similarity=0.224 Sum_probs=24.0
Q ss_pred cCccEEEEeCCCC-C------CCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 33 LAVDLIITDYCMP-G------MTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 33 ~~~d~vi~d~~~~-~------~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
...+++++|=..- . ...+.-+..++ ...+..|++++|+....
T Consensus 126 ~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~---~~~~~~~vi~lTAT~~~ 174 (591)
T TIGR01389 126 IPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA---ERFPQVPRIALTATADA 174 (591)
T ss_pred CCCCEEEEeCCcccccccCccHHHHHHHHHHH---HhCCCCCEEEEEeCCCH
Confidence 3577888874331 1 11233344454 45667789999977544
No 393
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=21.36 E-value=2.2e+02 Score=17.69 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=22.9
Q ss_pred CccEEEEeCCCCCCCHH---HHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVDLIITDYCMPGMTGC---ELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~---~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.|+++|+|--....|.. .+++.++ .........+|++|.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~-~l~~~~g~tiiliTH 199 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLK-EINRRLGLTILLITH 199 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeC
Confidence 79999999887776643 2344444 111122455666664
No 394
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=21.32 E-value=1.3e+02 Score=16.90 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=9.7
Q ss_pred CccEEEEeCCCCC
Q 039883 34 AVDLIITDYCMPG 46 (82)
Q Consensus 34 ~~d~vi~d~~~~~ 46 (82)
+|+++|+|--...
T Consensus 122 ~p~llllDEP~~~ 134 (213)
T PRK15177 122 PCRLYIADGKLYT 134 (213)
T ss_pred CCCEEEECCCCcc
Confidence 7999999964433
No 395
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=21.23 E-value=2.3e+02 Score=17.86 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=24.4
Q ss_pred CccEEEEeCCCCCCCHH---HHHHHHHhhcCCCCCccEEEEeeC
Q 039883 34 AVDLIITDYCMPGMTGC---ELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~---~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+|+++|+|-=+...|.. .+...|+ ........++|++|..
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~-~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELK-ALQRKLGITFVFVTHD 204 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCC
Confidence 79999999988877653 2344444 1112235667777643
No 396
>PRK10444 UMP phosphatase; Provisional
Probab=21.22 E-value=1.9e+02 Score=16.91 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=14.2
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
...++++.++ ....|++++|+...
T Consensus 21 ~a~~~l~~L~-----~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 21 GAAEFLHRIL-----DKGLPLVLLTNYPS 44 (248)
T ss_pred cHHHHHHHHH-----HCCCeEEEEeCCCC
Confidence 3556666666 33456777776543
No 397
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.07 E-value=1.9e+02 Score=20.67 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=21.6
Q ss_pred cCccEEEEeCCCCCCC---HHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 33 LAVDLIITDYCMPGMT---GCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~---~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+|.++|+|=-..+.+ ...+...++ . ......+|++|..
T Consensus 1110 ~~~~~~~lDE~~~~ld~~~~~~~~~~~~-~--~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1110 KPAPFCILDEVDAPLDDANVERFANLLK-E--FSKNTQFIVITHN 1151 (1179)
T ss_pred CCCCeEEecCccccccHHHHHHHHHHHH-H--hccCCEEEEEEcC
Confidence 3678999986444444 344556565 1 1223456666644
No 398
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=21.03 E-value=44 Score=16.17 Aligned_cols=26 Identities=15% Similarity=-0.075 Sum_probs=13.5
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
..++|++++|..........-++.+.
T Consensus 67 ~~~~dli~iDg~H~~~~~~~dl~~~~ 92 (106)
T PF13578_consen 67 DGPIDLIFIDGDHSYEAVLRDLENAL 92 (106)
T ss_dssp H--EEEEEEES---HHHHHHHHHHHG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 35799999999776544444444443
No 399
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=21.02 E-value=1.1e+02 Score=18.71 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=14.2
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
+..+|.+++|. |.+.+.+.+..+.
T Consensus 154 wg~lDyLviDt--PPGtsDehls~~~ 177 (300)
T KOG3022|consen 154 WGELDYLVIDT--PPGTSDEHLSLVQ 177 (300)
T ss_pred CCCcCEEEEeC--CCCCChhhhheee
Confidence 34699999985 4444444444433
No 400
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.97 E-value=1.8e+02 Score=16.64 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=16.8
Q ss_pred CccEEEEeCCCCCCCHH---HHHHHHH
Q 039883 34 AVDLIITDYCMPGMTGC---ELIKKIK 57 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~---~~~~~l~ 57 (82)
+|+++|+|--..+.|.. .+.+.++
T Consensus 165 ~p~llllDEP~~~LD~~~~~~l~~~l~ 191 (251)
T PRK14251 165 RPKVVLLDEPTSALDPISSSEIEETLM 191 (251)
T ss_pred CCCEEEecCCCccCCHHHHHHHHHHHH
Confidence 79999999877776643 3445555
No 401
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=20.95 E-value=2e+02 Score=17.12 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=24.7
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+....||+|++...-+ +...+++.++ ......+++..+.
T Consensus 192 l~~~~~d~i~~~~~~~--~~~~~~~~~~---~~g~~~~~~~~~~ 230 (345)
T cd06338 192 AKAAGPDAVVVAGHFP--DAVLLVRQMK---ELGYNPKALYMTV 230 (345)
T ss_pred HHhcCCCEEEECCcch--hHHHHHHHHH---HcCCCCCEEEEec
Confidence 4455799998765544 4677888887 3444556665543
No 402
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.87 E-value=1.8e+02 Score=17.32 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.+++++.+| . ...+|+++++-.+
T Consensus 79 ~~~~~~~~r---~-~~~~p~vlm~Y~N 101 (263)
T CHL00200 79 ILSILSEVN---G-EIKAPIVIFTYYN 101 (263)
T ss_pred HHHHHHHHh---c-CCCCCEEEEeccc
Confidence 355555555 2 3678988887554
No 403
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=20.85 E-value=1.9e+02 Score=16.89 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.1
Q ss_pred CccEEEEeCCCCCCCHH
Q 039883 34 AVDLIITDYCMPGMTGC 50 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~ 50 (82)
+|+++|+|-=..+.|..
T Consensus 169 ~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 169 EPKLLILDEAVSNLDLV 185 (268)
T ss_pred CCCEEEEeCCCcccCHH
Confidence 79999999988777753
No 404
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.74 E-value=1.3e+02 Score=18.75 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHHHHHHhhcCCCCCccEEEEeeCCchhhh
Q 039883 51 ELIKKIKLQSFTFREIPTVIISSENILARI 80 (82)
Q Consensus 51 ~~~~~l~~~~~~~~~~~vi~ls~~~~~~~~ 80 (82)
+.+...+ ......++|.|++|+..+.+..
T Consensus 229 eA~~~f~-~~~~~~~~P~i~LSaGV~~~~F 257 (329)
T PRK04161 229 EAIKAFK-DQEAATHLPYIYLSAGVSAKLF 257 (329)
T ss_pred HHHHHHH-HHhcccCCCEEEEcCCCCHHHH
Confidence 5556665 2245678999999998776654
No 405
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.72 E-value=2.1e+02 Score=17.22 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=25.2
Q ss_pred cCccEEEEeCCCCCCCH---HHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 33 LAVDLIITDYCMPGMTG---CELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~---~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..|+++|+|==..+.|. .++.+.++ ....... ..|++|++.-.
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~-~l~~~g~-~tvlissH~l~ 198 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLR-ELAKEGG-VTILLSTHILE 198 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHH-HHHhCCC-cEEEEeCCcHH
Confidence 37999999987777664 33455555 2112221 45666666443
No 406
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=20.69 E-value=1.6e+02 Score=15.94 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=23.2
Q ss_pred CccEEEEeCCCCCCCHHHHH-----HHHHhhcCCCCCccEEEEeeCCc
Q 039883 34 AVDLIITDYCMPGMTGCELI-----KKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~-----~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..+++++-+.+.+.+.++.+ ..++ ...+..|++++....|
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i~---~~~~~~piilvgNK~D 115 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIR---EHCPGVKLVLVALKCD 115 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH---HhCCCCCEEEEEEChh
Confidence 35677755555554455433 3344 3345788888877655
No 407
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.69 E-value=1.2e+02 Score=16.06 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=21.3
Q ss_pred cCccEEEEeCCCCC----CCHHH-------HHHHHHhhcCCCCCccEEEEee
Q 039883 33 LAVDLIITDYCMPG----MTGCE-------LIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 33 ~~~d~vi~d~~~~~----~~~~~-------~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.+||+|++-...-+ .+..+ +++.++ ...+.+++++++.
T Consensus 49 ~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~---~~~~~~~iil~~~ 97 (171)
T cd04502 49 YQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIR---AKLPDTPIAIISI 97 (171)
T ss_pred CCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHH---HHCCCCcEEEEEe
Confidence 47999888443322 23222 233444 3456778888874
No 408
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=20.68 E-value=1.8e+02 Score=16.51 Aligned_cols=10 Identities=30% Similarity=0.414 Sum_probs=8.0
Q ss_pred CccEEEEeCC
Q 039883 34 AVDLIITDYC 43 (82)
Q Consensus 34 ~~d~vi~d~~ 43 (82)
.+|.||+|.-
T Consensus 111 ~~D~viiD~p 120 (261)
T TIGR01968 111 EFDYVIIDCP 120 (261)
T ss_pred hCCEEEEeCC
Confidence 5899999864
No 409
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=20.68 E-value=2.7e+02 Score=18.69 Aligned_cols=26 Identities=12% Similarity=-0.082 Sum_probs=17.1
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+..+.++.++ ....++|.+|+..+..
T Consensus 351 e~i~a~~~ak-----~~ga~~IaIT~~~~S~ 376 (604)
T PRK00331 351 DTLAALRLAK-----ELGAKTLAICNVPGST 376 (604)
T ss_pred HHHHHHHHHH-----HCCCCEEEEECCCCCh
Confidence 3455666666 3357999999876554
No 410
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.57 E-value=1.5e+02 Score=15.43 Aligned_cols=8 Identities=0% Similarity=0.322 Sum_probs=3.9
Q ss_pred CccEEEEe
Q 039883 65 EIPTVIIS 72 (82)
Q Consensus 65 ~~~vi~ls 72 (82)
..++|.+|
T Consensus 130 G~~vIalT 137 (138)
T PF13580_consen 130 GMKVIALT 137 (138)
T ss_dssp T-EEEEEE
T ss_pred CCEEEEEe
Confidence 45556555
No 411
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=20.56 E-value=96 Score=14.87 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=8.2
Q ss_pred CccEEEEeC
Q 039883 34 AVDLIITDY 42 (82)
Q Consensus 34 ~~d~vi~d~ 42 (82)
+||+|++..
T Consensus 70 ~~D~v~~~~ 78 (112)
T PF12847_consen 70 PFDLVICSG 78 (112)
T ss_dssp CEEEEEECS
T ss_pred CCCEEEECC
Confidence 699999998
No 412
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=20.53 E-value=2e+02 Score=17.37 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=25.1
Q ss_pred cCccEEEEeCCCCCCCH---HH-----------HHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 33 LAVDLIITDYCMPGMTG---CE-----------LIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~---~~-----------~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
...|+|++-...|...| .+ +.+.++ ...+..-+|++|.+.+
T Consensus 65 ~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~---~~~p~~~viv~sNP~d 119 (300)
T cd00300 65 ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK---KYGPDAIILVVSNPVD 119 (300)
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HhCCCeEEEEccChHH
Confidence 35888888887764332 22 334444 4557777888886644
No 413
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=20.50 E-value=1.9e+02 Score=17.00 Aligned_cols=19 Identities=16% Similarity=-0.092 Sum_probs=14.6
Q ss_pred cCccEEEEeCCCCCCCHHH
Q 039883 33 LAVDLIITDYCMPGMTGCE 51 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~ 51 (82)
..||.+++|+.-+...+++
T Consensus 96 e~PD~lvfDLDP~~~~~f~ 114 (227)
T cd04861 96 ERPDRLVFDLDPGPGVPFE 114 (227)
T ss_pred CCCCEEEEECCCCCCCCHH
Confidence 3699999999998654443
No 414
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.50 E-value=1.6e+02 Score=18.56 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=25.1
Q ss_pred HhhccCccE-EEEeCCCCCCCHHHH---HHHHHhhcCCCCCccEEEEeeCC
Q 039883 29 EVHVLAVDL-IITDYCMPGMTGCEL---IKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 29 ~~~~~~~d~-vi~d~~~~~~~~~~~---~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+....+|++ +|+-...++.-|.++ ++.++ .. ...|++.+..+.
T Consensus 81 ~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~---~~-~~~~vi~v~t~g 127 (410)
T cd01968 81 IIERYHPKAVFVYSTCVVALIGDDIDAVCKTAS---EK-FGIPVIPVHSPG 127 (410)
T ss_pred HHHhCCCCEEEEECCCchhhhccCHHHHHHHHH---Hh-hCCCEEEEECCC
Confidence 344557885 455666666666554 44444 22 267888887554
No 415
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=20.46 E-value=2.8e+02 Score=18.65 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=24.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
++-++++|.+ |...|..+++.|. ...-...-+.++
T Consensus 385 ~frVvVVDSR-P~~EG~~~lr~Lv---~~GinctYv~I~ 419 (556)
T KOG1467|consen 385 KFRVVVVDSR-PNLEGRKLLRRLV---DRGINCTYVLIN 419 (556)
T ss_pred ceEEEEEeCC-CCcchHHHHHHHH---HcCCCeEEEEeh
Confidence 5789999987 5668999999998 344444444443
No 416
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=20.40 E-value=1.5e+02 Score=15.41 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=26.5
Q ss_pred hhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
....+++.++++....+. .|..+++.++ ......|++-+.+
T Consensus 39 ~~~~~~~~~~~E~~~~~~~~~~~l~~~l~---~~~~~~~i~~~~~ 80 (142)
T TIGR01630 39 LNAHRVNLAIIESNQEGKSFGRSLVKILK---EKGIRTPARAVYP 80 (142)
T ss_pred HHHcCCcceeeeccccchHHHHHHHHHHH---hhCCCCCceeeCC
Confidence 344578888888877654 5667788777 3334456665554
No 417
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=20.36 E-value=1.8e+02 Score=17.00 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=22.5
Q ss_pred CccEEEEeC----CCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 34 AVDLIITDY----CMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 34 ~~d~vi~d~----~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
++|.|+++- ..|-.+.+.+...++ ....|+|++++.
T Consensus 106 ~~d~vlVEGAGGl~vPl~~~~~~~D~~~-----~~~lpvILV~~~ 145 (223)
T COG0132 106 KYDLVLVEGAGGLLVPLTEEYTFADLAV-----QLQLPVILVVGI 145 (223)
T ss_pred ccCEEEEeCCCceeeecCCcccHHHHHH-----HcCCCEEEEecC
Confidence 678888753 444444555666666 344788887754
No 418
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.21 E-value=1.6e+02 Score=15.83 Aligned_cols=14 Identities=0% Similarity=-0.014 Sum_probs=10.4
Q ss_pred cCccEEEEeCCCCC
Q 039883 33 LAVDLIITDYCMPG 46 (82)
Q Consensus 33 ~~~d~vi~d~~~~~ 46 (82)
.+||+|++-+..-+
T Consensus 68 ~~pd~V~i~~G~ND 81 (193)
T cd01835 68 NVPNRLVLSVGLND 81 (193)
T ss_pred CCCCEEEEEecCcc
Confidence 47999998766554
No 419
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=20.16 E-value=1.5e+02 Score=15.43 Aligned_cols=39 Identities=3% Similarity=0.006 Sum_probs=23.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.||+|++-+.--+..-.+-++.+. . ...+..+|++++.+
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii-~-~~~~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELL-D-ALGPDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHH-H-HcCCCCEEEEEECC
Confidence 589988887776654444455554 1 12334677777654
No 420
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.07 E-value=2.1e+02 Score=17.11 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=24.6
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
.+....||+|++....+ ++..+++.++ ......+++..
T Consensus 196 ~l~~~~~d~v~~~~~~~--~~~~~~~~~~---~~g~~~~~~~~ 233 (342)
T cd06329 196 KIKASGADTVITGNWGN--DLLLLVKQAA---DAGLKLPFYTP 233 (342)
T ss_pred HHHHcCCCEEEEcccCc--hHHHHHHHHH---HcCCCceEEec
Confidence 34556799999866444 5677888888 33445555543
No 421
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.02 E-value=1.8e+02 Score=19.04 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 37 LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 37 ~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+|+|....-++||+-+.+.|. .....+.|+++
T Consensus 63 lVlcG~GNNGGDGlv~AR~L~---~~G~~V~v~~~ 94 (462)
T PLN03049 63 LALCGPGNNGGDGLVAARHLH---HFGYKPSICYP 94 (462)
T ss_pred EEEECCCCCHHHHHHHHHHHH---HCCCceEEEEE
Confidence 577888888888888899887 34455544444
Done!