Query 039883
Match_columns 82
No_of_seqs 106 out of 2222
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 04:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.7 8.6E-17 2.9E-21 82.8 5.8 78 2-80 19-102 (134)
2 2lpm_A Two-component response 99.5 9.8E-16 3.3E-20 77.9 0.1 71 3-78 16-92 (123)
3 3gl9_A Response regulator; bet 99.5 9.2E-14 3.2E-18 69.8 6.4 77 2-79 9-90 (122)
4 3t6k_A Response regulator rece 99.4 5E-13 1.7E-17 68.2 6.0 61 18-79 27-92 (136)
5 3f6p_A Transcriptional regulat 99.4 1.6E-12 5.5E-17 65.0 5.9 58 18-79 25-87 (120)
6 3rqi_A Response regulator prot 99.3 3.3E-13 1.1E-17 72.1 2.4 75 2-79 14-93 (184)
7 3gt7_A Sensor protein; structu 99.3 9.5E-12 3.2E-16 64.6 7.3 76 3-79 15-95 (154)
8 1srr_A SPO0F, sporulation resp 99.3 5E-12 1.7E-16 63.3 5.9 60 17-79 25-89 (124)
9 3n0r_A Response regulator; sig 99.3 7.6E-13 2.6E-17 75.3 3.0 71 2-76 167-244 (286)
10 3m6m_D Sensory/regulatory prot 99.3 1E-11 3.6E-16 63.8 7.0 78 2-79 21-104 (143)
11 1dbw_A Transcriptional regulat 99.3 4.7E-12 1.6E-16 63.6 5.5 58 19-79 29-89 (126)
12 3eq2_A Probable two-component 99.3 2.3E-12 7.9E-17 75.7 4.9 75 2-79 12-91 (394)
13 3hv2_A Response regulator/HD d 99.3 7.3E-12 2.5E-16 64.8 6.2 75 2-79 21-100 (153)
14 3r0j_A Possible two component 99.3 5.4E-12 1.8E-16 70.1 5.7 75 2-79 30-109 (250)
15 3h1g_A Chemotaxis protein CHEY 99.3 9.3E-12 3.2E-16 62.8 6.1 45 34-79 51-95 (129)
16 2pl1_A Transcriptional regulat 99.3 1E-11 3.5E-16 61.7 5.7 57 19-78 26-85 (121)
17 3f6c_A Positive transcription 99.3 8.6E-12 2.9E-16 63.1 5.4 73 3-78 9-87 (134)
18 1yio_A Response regulatory pro 99.3 6.7E-12 2.3E-16 67.8 5.2 74 2-78 11-89 (208)
19 3i42_A Response regulator rece 99.3 1.8E-11 6.3E-16 61.4 6.5 61 17-78 25-90 (127)
20 2r25_B Osmosensing histidine p 99.3 9.6E-12 3.3E-16 63.2 5.4 45 33-79 51-95 (133)
21 3cfy_A Putative LUXO repressor 99.3 1.3E-11 4.3E-16 63.0 5.7 64 13-79 22-90 (137)
22 3kto_A Response regulator rece 99.3 4.1E-12 1.4E-16 64.6 3.7 75 2-79 13-94 (136)
23 1mb3_A Cell division response 99.3 9.8E-12 3.4E-16 62.1 5.0 60 18-78 24-88 (124)
24 1p6q_A CHEY2; chemotaxis, sign 99.3 2.5E-11 8.6E-16 61.0 6.5 50 29-79 46-95 (129)
25 3grc_A Sensor protein, kinase; 99.3 1.5E-11 5.1E-16 62.7 5.5 61 18-79 31-94 (140)
26 3crn_A Response regulator rece 99.3 8E-12 2.7E-16 63.3 4.5 59 18-79 26-89 (132)
27 3luf_A Two-component system re 99.3 1.6E-11 5.6E-16 68.8 6.1 77 2-79 131-213 (259)
28 3c3m_A Response regulator rece 99.3 3.5E-11 1.2E-15 61.3 6.9 58 18-76 26-88 (138)
29 3dzd_A Transcriptional regulat 99.3 1.3E-12 4.6E-17 76.5 1.7 75 2-79 7-86 (368)
30 3eod_A Protein HNR; response r 99.3 8E-12 2.7E-16 63.0 4.3 59 18-79 32-93 (130)
31 3b2n_A Uncharacterized protein 99.2 1.5E-11 5E-16 62.4 5.0 54 23-79 35-91 (133)
32 3a10_A Response regulator; pho 99.2 2.2E-11 7.5E-16 60.2 5.6 57 18-77 24-85 (116)
33 3nhm_A Response regulator; pro 99.2 7.3E-11 2.5E-15 59.5 7.5 61 17-78 27-90 (133)
34 1zgz_A Torcad operon transcrip 99.2 3.6E-11 1.2E-15 59.9 6.3 46 29-78 41-86 (122)
35 1w25_A Stalked-cell differenti 99.2 1.8E-11 6.3E-16 72.9 5.9 61 18-79 26-89 (459)
36 3hdg_A Uncharacterized protein 99.2 2E-11 7E-16 62.0 5.2 59 18-79 32-93 (137)
37 1tmy_A CHEY protein, TMY; chem 99.2 1.2E-11 4.2E-16 61.5 4.2 59 17-78 24-88 (120)
38 4e7p_A Response regulator; DNA 99.2 4.8E-11 1.6E-15 61.6 6.5 54 23-79 52-108 (150)
39 1kgs_A DRRD, DNA binding respo 99.2 2.6E-11 9E-16 66.1 5.7 59 18-79 25-88 (225)
40 3hdv_A Response regulator; PSI 99.2 2.8E-11 9.7E-16 61.3 5.5 59 18-79 32-95 (136)
41 3snk_A Response regulator CHEY 99.2 2.3E-12 7.7E-17 65.5 1.3 74 3-79 22-101 (135)
42 1i3c_A Response regulator RCP1 99.2 7.5E-11 2.6E-15 60.8 6.9 46 33-79 60-105 (149)
43 1jbe_A Chemotaxis protein CHEY 99.2 4.8E-11 1.6E-15 59.9 6.0 59 20-79 32-93 (128)
44 3mm4_A Histidine kinase homolo 99.2 2.4E-11 8.2E-16 66.0 5.2 42 34-75 119-161 (206)
45 3ilh_A Two component response 99.2 4.7E-11 1.6E-15 61.0 6.0 46 33-79 59-106 (146)
46 1ys7_A Transcriptional regulat 99.2 4.1E-11 1.4E-15 65.7 6.1 58 18-78 30-92 (233)
47 3jte_A Response regulator rece 99.2 3.1E-11 1.1E-15 61.7 5.3 45 32-79 47-91 (143)
48 1a04_A Nitrate/nitrite respons 99.2 7.4E-11 2.5E-15 64.1 7.0 75 2-79 12-93 (215)
49 2jba_A Phosphate regulon trans 99.2 1.7E-11 6E-16 61.4 4.2 60 19-79 26-90 (127)
50 2jk1_A HUPR, hydrogenase trans 99.2 3.3E-11 1.1E-15 61.4 5.3 57 19-78 26-85 (139)
51 1mvo_A PHOP response regulator 99.2 4.6E-11 1.6E-15 60.5 5.8 57 18-77 26-87 (136)
52 3cg4_A Response regulator rece 99.2 6.5E-11 2.2E-15 60.3 6.3 59 19-78 31-94 (142)
53 3n53_A Response regulator rece 99.2 5.6E-11 1.9E-15 60.6 6.0 58 21-79 30-90 (140)
54 3cu5_A Two component transcrip 99.2 5.1E-11 1.7E-15 61.0 5.9 46 30-78 45-90 (141)
55 3bre_A Probable two-component 99.2 4.6E-11 1.6E-15 69.2 6.3 77 2-79 25-107 (358)
56 3hzh_A Chemotaxis response reg 99.2 2.5E-11 8.4E-16 63.2 4.7 60 17-79 58-125 (157)
57 1xhf_A DYE resistance, aerobic 99.2 4.8E-11 1.6E-15 59.5 5.6 58 17-78 25-87 (123)
58 3lua_A Response regulator rece 99.2 9.8E-12 3.4E-16 63.4 3.0 62 17-79 29-95 (140)
59 2rjn_A Response regulator rece 99.2 4.8E-11 1.6E-15 61.8 5.7 58 18-78 30-92 (154)
60 3q9s_A DNA-binding response re 99.2 2.6E-11 8.8E-16 67.6 4.9 74 2-79 44-122 (249)
61 1dz3_A Stage 0 sporulation pro 99.2 7.1E-11 2.4E-15 59.5 6.1 59 19-79 27-91 (130)
62 3kht_A Response regulator; PSI 99.2 3.5E-11 1.2E-15 61.6 5.0 59 20-79 34-95 (144)
63 1ny5_A Transcriptional regulat 99.2 1.9E-11 6.6E-16 72.0 4.2 75 2-79 7-86 (387)
64 2qzj_A Two-component response 99.2 4.5E-11 1.6E-15 60.8 5.0 57 18-78 27-88 (136)
65 1s8n_A Putative antiterminator 99.2 9E-11 3.1E-15 63.4 6.3 73 3-79 21-99 (205)
66 2b4a_A BH3024; flavodoxin-like 99.2 9.8E-11 3.4E-15 59.5 6.1 57 18-77 40-101 (138)
67 2zay_A Response regulator rece 99.2 5.1E-11 1.7E-15 61.1 4.8 61 18-79 31-96 (147)
68 3heb_A Response regulator rece 99.2 4.7E-10 1.6E-14 57.9 8.3 47 32-79 57-103 (152)
69 2a9o_A Response regulator; ess 99.2 5.9E-11 2E-15 58.8 4.7 56 19-78 25-85 (120)
70 3cnb_A DNA-binding response re 99.2 1.2E-10 4.1E-15 59.3 5.9 58 20-78 37-97 (143)
71 2rdm_A Response regulator rece 99.2 9.2E-11 3.2E-15 59.0 5.3 58 18-78 28-92 (132)
72 3h5i_A Response regulator/sens 99.2 8.2E-11 2.8E-15 60.0 5.2 57 18-78 28-91 (140)
73 2ayx_A Sensor kinase protein R 99.2 1.4E-11 4.8E-16 68.8 2.5 59 17-78 153-214 (254)
74 3cz5_A Two-component response 99.2 1.8E-10 6.2E-15 59.5 6.5 74 3-79 13-93 (153)
75 2qr3_A Two-component system re 99.1 1.2E-10 4.1E-15 59.2 5.7 73 3-78 11-93 (140)
76 1k68_A Phytochrome response re 99.1 1.7E-10 5.9E-15 58.4 6.2 46 33-79 54-99 (140)
77 3kcn_A Adenylate cyclase homol 99.1 1.6E-10 5.5E-15 59.6 6.0 58 19-79 27-90 (151)
78 3eul_A Possible nitrate/nitrit 99.1 2.1E-10 7E-15 59.2 6.2 54 23-79 47-103 (152)
79 1zh2_A KDP operon transcriptio 99.1 1E-10 3.6E-15 58.0 4.9 58 17-78 23-85 (121)
80 4dad_A Putative pilus assembly 99.1 2.4E-11 8.3E-16 62.3 2.6 44 33-79 66-109 (146)
81 2qxy_A Response regulator; reg 99.1 7.2E-11 2.5E-15 60.2 4.2 59 17-79 26-89 (142)
82 1qkk_A DCTD, C4-dicarboxylate 99.1 8.4E-11 2.9E-15 60.9 4.4 58 18-78 28-88 (155)
83 3klo_A Transcriptional regulat 99.1 3.3E-11 1.1E-15 66.0 2.9 45 31-78 51-96 (225)
84 1k66_A Phytochrome response re 99.1 1.8E-10 6E-15 59.0 5.4 46 33-79 61-106 (149)
85 2gwr_A DNA-binding response re 99.1 2.2E-10 7.4E-15 63.2 5.7 57 18-78 28-89 (238)
86 3lte_A Response regulator; str 99.1 4.4E-10 1.5E-14 56.6 6.4 58 18-76 31-91 (132)
87 3c3w_A Two component transcrip 99.1 4.9E-11 1.7E-15 65.4 2.7 75 2-79 8-89 (225)
88 2j48_A Two-component sensor ki 99.1 7.1E-10 2.4E-14 54.5 6.1 59 18-77 26-87 (119)
89 2oqr_A Sensory transduction pr 99.1 2.1E-10 7.3E-15 62.7 4.4 57 18-78 27-88 (230)
90 3c97_A Signal transduction his 99.0 6.5E-10 2.2E-14 56.6 5.7 59 18-76 35-98 (140)
91 3cg0_A Response regulator rece 99.0 3.1E-10 1.1E-14 57.6 4.4 58 18-79 32-96 (140)
92 3eqz_A Response regulator; str 99.0 4.3E-10 1.5E-14 56.7 4.6 55 19-77 29-86 (135)
93 3luf_A Two-component system re 99.0 9.5E-11 3.3E-15 65.7 1.9 44 31-79 45-88 (259)
94 2gkg_A Response regulator homo 99.0 6.8E-10 2.3E-14 55.3 4.7 59 18-78 30-92 (127)
95 2qvg_A Two component response 99.0 6.2E-09 2.1E-13 52.9 8.2 60 19-79 35-103 (143)
96 3sy8_A ROCR; TIM barrel phosph 99.0 4.8E-10 1.7E-14 66.2 3.9 55 20-77 31-89 (400)
97 3t8y_A CHEB, chemotaxis respon 99.0 4.4E-09 1.5E-13 55.0 7.0 51 23-77 57-110 (164)
98 1dc7_A NTRC, nitrogen regulati 99.0 3.1E-11 1.1E-15 60.1 -1.3 58 18-78 26-88 (124)
99 1p2f_A Response regulator; DRR 99.0 1.2E-09 4.1E-14 59.5 4.9 75 2-79 9-85 (220)
100 3kyj_B CHEY6 protein, putative 99.0 5.5E-10 1.9E-14 57.2 3.4 68 2-73 20-95 (145)
101 2qv0_A Protein MRKE; structura 98.9 2.5E-09 8.7E-14 54.5 5.5 44 29-75 50-93 (143)
102 1qo0_D AMIR; binding protein, 98.9 4.3E-10 1.5E-14 60.3 2.5 57 18-79 35-93 (196)
103 1a2o_A CHEB methylesterase; ba 98.9 4E-09 1.4E-13 61.6 6.6 72 2-77 10-88 (349)
104 2qsj_A DNA-binding response re 98.9 4.8E-10 1.7E-14 57.9 1.8 56 20-78 32-91 (154)
105 1dcf_A ETR1 protein; beta-alph 98.9 3.3E-09 1.1E-13 53.6 4.5 61 18-78 30-96 (136)
106 2vyc_A Biodegradative arginine 98.7 4.7E-09 1.6E-13 66.4 2.2 57 17-76 30-96 (755)
107 2hqr_A Putative transcriptiona 98.7 2.2E-08 7.4E-13 54.6 4.3 71 2-79 7-82 (223)
108 2pln_A HP1043, response regula 98.6 4.1E-08 1.4E-12 49.6 3.9 54 18-79 43-100 (137)
109 3cwo_X Beta/alpha-barrel prote 98.5 3.3E-07 1.1E-11 50.1 5.2 45 28-75 19-63 (237)
110 1w25_A Stalked-cell differenti 97.8 5.4E-05 1.8E-09 45.3 5.3 46 32-78 192-237 (459)
111 3n75_A LDC, lysine decarboxyla 95.9 0.0086 2.9E-07 38.4 3.5 57 14-76 25-87 (715)
112 1g5t_A COB(I)alamin adenosyltr 86.7 2.5 8.6E-05 23.0 5.5 42 32-77 118-164 (196)
113 3md9_A Hemin-binding periplasm 84.7 1.1 3.8E-05 24.7 3.1 38 28-73 53-90 (255)
114 4h08_A Putative hydrolase; GDS 84.1 2.1 7.1E-05 22.4 4.0 41 30-73 70-119 (200)
115 2r7a_A Bacterial heme binding 80.3 2.1 7.1E-05 23.6 3.2 38 28-73 53-90 (256)
116 3skv_A SSFX3; jelly roll, GDSL 79.9 1.6 5.3E-05 26.1 2.7 43 29-74 239-292 (385)
117 2r79_A Periplasmic binding pro 79.5 1.7 5.7E-05 24.4 2.7 38 28-73 53-90 (283)
118 2i2x_B MTAC, methyltransferase 78.3 7 0.00024 21.9 5.9 55 16-73 148-212 (258)
119 1y80_A Predicted cobalamin bin 75.6 7.4 0.00025 20.9 4.9 57 16-73 113-179 (210)
120 1es9_A PAF-AH, platelet-activa 69.3 11 0.00038 20.2 4.4 40 32-74 91-139 (232)
121 3psh_A Protein HI_1472; substr 67.9 15 0.0005 21.0 5.4 38 28-74 78-115 (326)
122 2yxb_A Coenzyme B12-dependent 67.5 11 0.00038 19.5 4.5 56 15-72 42-107 (161)
123 1n2z_A Vitamin B12 transport p 65.1 7.6 0.00026 21.2 3.0 37 28-72 51-87 (245)
124 1xrs_B D-lysine 5,6-aminomutas 64.7 17 0.00059 20.7 5.2 56 15-71 152-221 (262)
125 3ezx_A MMCP 1, monomethylamine 64.5 6.2 0.00021 21.6 2.6 61 14-75 115-187 (215)
126 4hn9_A Iron complex transport 63.4 12 0.0004 21.6 3.7 36 28-73 110-145 (335)
127 3dci_A Arylesterase; SGNH_hydr 62.1 16 0.00056 19.5 4.4 43 30-75 96-157 (232)
128 1qv9_A F420-dependent methylen 59.3 23 0.00078 20.3 4.7 41 31-75 61-101 (283)
129 3bul_A Methionine synthase; tr 58.8 22 0.00075 22.8 4.5 57 14-73 121-187 (579)
130 3kp1_A D-ornithine aminomutase 58.5 33 0.0011 22.8 5.2 57 14-71 629-698 (763)
131 2iyf_A OLED, oleandomycin glyc 58.2 17 0.00058 21.4 3.9 15 29-43 99-113 (430)
132 1x92_A APC5045, phosphoheptose 57.9 16 0.00056 19.2 3.5 40 34-78 112-153 (199)
133 2iya_A OLEI, oleandomycin glyc 57.6 24 0.00081 20.8 4.4 34 29-72 104-137 (424)
134 2xhz_A KDSD, YRBH, arabinose 5 57.5 18 0.00062 18.6 4.0 24 49-77 112-135 (183)
135 2wao_A Endoglucanase E; plant 57.1 22 0.00074 20.6 4.1 40 32-74 211-262 (341)
136 3sho_A Transcriptional regulat 56.8 16 0.00056 18.9 3.4 41 32-77 84-126 (187)
137 3dc7_A Putative uncharacterize 55.7 4.9 0.00017 21.5 1.2 22 51-75 118-139 (232)
138 4af0_A Inosine-5'-monophosphat 55.7 18 0.00061 23.1 3.7 42 28-72 287-329 (556)
139 1ccw_A Protein (glutamate muta 54.8 11 0.00039 18.9 2.4 56 14-71 26-91 (137)
140 2pq6_A UDP-glucuronosyl/UDP-gl 54.6 18 0.00062 22.0 3.6 32 33-74 117-148 (482)
141 2etv_A Iron(III) ABC transport 54.4 23 0.00077 20.6 3.9 37 28-73 90-126 (346)
142 2yva_A DNAA initiator-associat 54.3 21 0.00072 18.6 3.5 40 34-78 108-149 (196)
143 2q0q_A ARYL esterase; SGNH hyd 54.0 22 0.00075 18.5 5.2 42 30-74 78-140 (216)
144 1tk9_A Phosphoheptose isomeras 53.8 20 0.00068 18.5 3.4 39 34-77 109-149 (188)
145 1m3s_A Hypothetical protein YC 53.2 20 0.00069 18.5 3.3 38 35-77 79-118 (186)
146 2c1x_A UDP-glucose flavonoid 3 52.8 36 0.0012 20.7 4.7 32 33-74 111-142 (456)
147 3tlk_A Ferrienterobactin-bindi 51.7 32 0.0011 19.7 4.3 39 28-73 109-147 (326)
148 1t9h_A YLOQ, probable GTPase E 51.2 34 0.0012 19.9 4.5 38 35-73 87-126 (307)
149 1vim_A Hypothetical protein AF 51.1 15 0.0005 19.5 2.6 24 49-77 105-128 (200)
150 2q8p_A Iron-regulated surface 49.6 17 0.00059 19.9 2.8 37 28-73 54-90 (260)
151 2xbl_A Phosphoheptose isomeras 49.4 25 0.00086 18.3 3.4 39 34-77 115-155 (198)
152 2cvh_A DNA repair and recombin 48.6 18 0.0006 19.0 2.7 14 34-47 105-118 (220)
153 2i2w_A Phosphoheptose isomeras 47.9 24 0.00082 18.9 3.2 39 35-78 131-171 (212)
154 1jeo_A MJ1247, hypothetical pr 47.6 28 0.00096 17.9 4.6 24 49-77 98-121 (180)
155 3lhs_A Ferrichrome ABC transpo 46.7 37 0.0013 19.0 4.2 36 28-73 79-114 (296)
156 3trj_A Phosphoheptose isomeras 46.4 33 0.0011 18.3 3.8 38 35-78 115-154 (201)
157 3usb_A Inosine-5'-monophosphat 45.6 34 0.0011 21.4 3.8 40 29-71 263-303 (511)
158 3etn_A Putative phosphosugar i 45.5 30 0.001 18.7 3.3 41 34-77 105-147 (220)
159 4fzr_A SSFS6; structural genom 45.0 39 0.0013 19.6 3.9 14 29-42 118-131 (398)
160 3ia7_A CALG4; glycosysltransfe 44.9 24 0.00084 20.3 3.1 15 28-42 96-110 (402)
161 3jx9_A Putative phosphoheptose 44.6 28 0.00096 18.4 3.0 34 35-73 78-112 (170)
162 2p6p_A Glycosyl transferase; X 44.1 41 0.0014 19.4 3.9 15 29-43 102-116 (384)
163 3r5t_A Ferric vibriobactin ABC 43.5 43 0.0015 18.9 4.1 39 28-73 80-118 (305)
164 3av0_A DNA double-strand break 42.2 52 0.0018 19.4 4.4 42 31-77 57-107 (386)
165 3tsa_A SPNG, NDP-rhamnosyltran 42.0 24 0.00081 20.4 2.7 15 28-42 108-122 (391)
166 1fxw_F Alpha2, platelet-activa 41.8 40 0.0014 17.9 4.2 39 32-73 92-139 (229)
167 2yjn_A ERYCIII, glycosyltransf 41.4 44 0.0015 19.9 3.8 34 29-72 139-172 (441)
168 4fxs_A Inosine-5'-monophosphat 41.3 44 0.0015 20.8 3.9 39 30-71 239-278 (496)
169 4h59_A PIAA, iron-compound ABC 39.8 15 0.0005 20.5 1.6 18 28-45 86-103 (308)
170 3rsc_A CALG2; TDP, enediyne, s 39.7 23 0.00077 20.7 2.4 15 28-42 112-126 (415)
171 3otg_A CALG1; calicheamicin, T 35.3 50 0.0017 19.1 3.4 14 29-42 125-138 (412)
172 1jmv_A USPA, universal stress 34.9 41 0.0014 16.1 4.5 40 30-74 98-139 (141)
173 2vpt_A Lipolytic enzyme; ester 34.7 15 0.00052 19.4 1.1 40 32-74 81-129 (215)
174 3s2u_A UDP-N-acetylglucosamine 33.8 26 0.00088 20.5 2.0 18 29-46 87-104 (365)
175 3w01_A Heptaprenylglyceryl pho 33.4 61 0.0021 18.2 3.3 40 30-74 32-73 (235)
176 2vch_A Hydroquinone glucosyltr 33.3 44 0.0015 20.4 3.0 30 34-73 109-139 (480)
177 3oti_A CALG3; calicheamicin, T 33.1 55 0.0019 19.0 3.3 14 28-41 124-137 (398)
178 3fxa_A SIS domain protein; str 33.0 23 0.00078 18.6 1.6 31 42-77 99-131 (201)
179 4avf_A Inosine-5'-monophosphat 32.3 65 0.0022 20.0 3.6 39 30-71 237-276 (490)
180 1ivn_A Thioesterase I; hydrola 32.0 55 0.0019 16.7 4.9 18 30-47 58-75 (190)
181 1vm6_A DHPR, dihydrodipicolina 31.7 50 0.0017 18.5 2.8 37 34-77 53-89 (228)
182 1lw7_A Transcriptional regulat 31.3 79 0.0027 18.4 3.8 41 33-74 276-328 (365)
183 2w0m_A SSO2452; RECA, SSPF, un 30.8 41 0.0014 17.6 2.4 44 31-75 118-168 (235)
184 2x4l_A Ferric-siderophore rece 30.7 50 0.0017 18.8 2.8 40 28-73 104-147 (325)
185 1cr0_A DNA primase/helicase; R 30.2 38 0.0013 19.0 2.2 43 32-75 145-197 (296)
186 3r2g_A Inosine 5'-monophosphat 30.1 65 0.0022 19.3 3.2 38 30-70 108-146 (361)
187 2acv_A Triterpene UDP-glucosyl 29.9 42 0.0014 20.4 2.5 23 33-57 113-135 (463)
188 3vzx_A Heptaprenylglyceryl pho 29.6 78 0.0027 17.7 3.3 41 30-75 27-69 (228)
189 3tef_A VCTP, iron(III) ABC tra 29.5 30 0.001 19.1 1.7 16 28-43 73-88 (292)
190 1nlf_A Regulatory protein REPA 29.1 30 0.001 19.3 1.7 41 34-75 133-181 (279)
191 2q6t_A DNAB replication FORK h 28.9 47 0.0016 20.1 2.6 43 32-75 308-363 (444)
192 1uf3_A Hypothetical protein TT 28.8 68 0.0023 16.7 4.2 41 32-77 30-75 (228)
193 3nav_A Tryptophan synthase alp 28.5 44 0.0015 19.1 2.3 21 50-73 85-105 (271)
194 3ugs_B Undecaprenyl pyrophosph 28.3 83 0.0028 17.6 3.4 23 35-57 192-214 (225)
195 4b8y_A FHUD2; transport protei 28.2 78 0.0027 17.5 3.3 34 28-73 72-105 (277)
196 3g9q_A Ferrichrome-binding pro 28.1 69 0.0023 17.7 3.0 35 28-73 65-99 (279)
197 3qfm_A SAPH, putative uncharac 27.8 85 0.0029 17.5 3.6 40 32-77 36-77 (270)
198 3snr_A Extracellular ligand-bi 27.8 56 0.0019 18.4 2.7 39 30-73 186-224 (362)
199 3b9q_A Chloroplast SRP recepto 27.6 40 0.0014 19.4 2.0 35 34-73 219-255 (302)
200 3tnj_A Universal stress protei 27.6 21 0.0007 17.5 0.8 41 29-74 104-148 (150)
201 3of5_A Dethiobiotin synthetase 27.5 81 0.0028 17.2 3.7 35 33-75 109-150 (228)
202 3sg0_A Extracellular ligand-bi 26.8 82 0.0028 17.9 3.3 39 29-72 209-247 (386)
203 2gm3_A Unknown protein; AT3G01 26.6 59 0.002 16.4 2.5 42 30-75 120-165 (175)
204 3adn_A Spermidine synthase; am 26.6 40 0.0014 19.3 1.9 25 33-57 156-185 (294)
205 4fo4_A Inosine 5'-monophosphat 26.1 1.1E+02 0.0038 18.3 3.8 40 28-70 114-154 (366)
206 3ffs_A Inosine-5-monophosphate 26.1 1.2E+02 0.004 18.5 4.3 39 28-70 150-189 (400)
207 3ijp_A DHPR, dihydrodipicolina 26.0 49 0.0017 19.1 2.2 35 34-75 88-122 (288)
208 3o4f_A Spermidine synthase; am 25.9 31 0.0011 20.0 1.4 24 34-57 157-185 (294)
209 2r6a_A DNAB helicase, replicat 25.9 42 0.0015 20.3 2.0 41 32-73 311-362 (454)
210 3igf_A ALL4481 protein; two-do 25.9 49 0.0017 19.8 2.2 21 32-53 122-142 (374)
211 3tny_A YFIY (ABC transport sys 25.5 43 0.0015 18.8 1.9 15 28-42 90-104 (303)
212 4dzz_A Plasmid partitioning pr 25.5 60 0.002 16.7 2.4 10 34-43 75-84 (206)
213 3mil_A Isoamyl acetate-hydroly 25.5 81 0.0028 16.5 3.6 15 33-47 71-85 (240)
214 2ekc_A AQ_1548, tryptophan syn 25.4 96 0.0033 17.4 3.4 41 30-73 40-102 (262)
215 3hut_A Putative branched-chain 25.0 69 0.0024 18.1 2.7 38 30-72 190-227 (358)
216 1q57_A DNA primase/helicase; d 24.9 89 0.003 19.2 3.3 43 32-75 352-404 (503)
217 1m2x_A Class B carbapenemase B 24.1 53 0.0018 17.4 2.0 36 36-73 37-72 (223)
218 3lkb_A Probable branched-chain 24.1 77 0.0026 18.3 2.8 37 30-71 194-230 (392)
219 3cvj_A Putative phosphoheptose 23.8 61 0.0021 17.7 2.3 24 48-76 123-146 (243)
220 3gcz_A Polyprotein; flavivirus 23.5 54 0.0019 19.0 2.0 15 31-45 153-167 (282)
221 1wv2_A Thiazole moeity, thiazo 23.3 1.2E+02 0.004 17.6 4.5 64 9-77 125-199 (265)
222 4hl2_A Beta-lactamase NDM-1; s 23.2 38 0.0013 18.3 1.4 37 36-74 58-94 (243)
223 2px2_A Genome polyprotein [con 23.2 56 0.0019 18.9 2.0 13 33-45 138-150 (269)
224 2nrr_A Uvrabc system protein C 22.9 34 0.0012 18.1 1.1 33 35-73 80-113 (159)
225 3lop_A Substrate binding perip 22.8 77 0.0026 18.0 2.7 37 30-71 192-228 (364)
226 3n2q_A Sex pheromone staph-CAM 22.8 1.1E+02 0.0036 17.9 3.1 22 49-71 114-135 (287)
227 2a3n_A Putative glucosamine-fr 22.4 1.2E+02 0.0042 17.7 3.5 25 49-78 118-142 (355)
228 1c4k_A Protein (ornithine deca 22.4 1.7E+02 0.006 19.3 4.7 33 34-74 32-64 (730)
229 1efd_N Ferrichrome-binding per 22.2 51 0.0017 18.1 1.8 15 28-42 60-74 (266)
230 2wi8_A Iron-uptake system-bind 21.9 1.2E+02 0.0041 17.2 5.0 35 28-72 90-124 (311)
231 1j5x_A Glucosamine-6-phosphate 21.9 1.1E+02 0.0037 17.8 3.1 35 39-78 104-140 (342)
232 1q77_A Hypothetical protein AQ 21.8 56 0.0019 15.6 1.7 14 31-44 106-119 (138)
233 3gfv_A Uncharacterized ABC tra 21.8 51 0.0017 18.5 1.7 35 28-73 89-123 (303)
234 1a5z_A L-lactate dehydrogenase 21.7 83 0.0028 18.1 2.6 40 34-76 67-120 (319)
235 2xij_A Methylmalonyl-COA mutas 21.7 1.9E+02 0.0066 19.5 4.5 42 16-57 629-680 (762)
236 3mwf_A Iron-regulated ABC tran 21.5 57 0.002 18.2 1.9 15 28-42 77-91 (298)
237 1req_A Methylmalonyl-COA mutas 21.5 1.5E+02 0.0051 19.8 3.9 42 16-57 621-672 (727)
238 3lda_A DNA repair protein RAD5 21.4 50 0.0017 19.9 1.7 43 31-74 270-327 (400)
239 2og2_A Putative signal recogni 21.2 62 0.0021 19.3 2.0 35 34-73 276-312 (359)
240 1xx6_A Thymidine kinase; NESG, 21.0 1.1E+02 0.0037 16.3 3.0 34 34-72 81-115 (191)
241 2dr3_A UPF0273 protein PH0284; 20.8 1.1E+02 0.0037 16.2 3.1 46 30-76 124-174 (247)
242 1jjt_A IMP-1 metallo beta-lact 20.8 54 0.0018 17.5 1.7 35 36-73 43-77 (228)
243 1nu0_A Hypothetical protein YQ 20.8 96 0.0033 15.7 2.5 43 28-74 47-97 (138)
244 4hn3_A LMO1757 protein; struct 20.8 99 0.0034 18.6 2.8 23 49-72 179-201 (350)
245 4h8e_A Undecaprenyl pyrophosph 20.7 69 0.0023 18.3 2.1 22 36-57 220-241 (256)
246 1tq8_A Hypothetical protein RV 20.5 51 0.0018 16.6 1.5 41 30-74 115-159 (163)
247 3sgv_B Undecaprenyl pyrophosph 20.4 70 0.0024 18.2 2.1 22 36-57 213-234 (253)
248 2chu_A CEUE, enterochelin upta 20.4 57 0.0019 18.3 1.7 34 28-72 89-122 (296)
249 3ipc_A ABC transporter, substr 20.4 74 0.0025 18.0 2.2 37 30-71 189-225 (356)
250 1f0k_A MURG, UDP-N-acetylgluco 20.3 69 0.0024 18.1 2.1 16 29-44 91-106 (364)
251 1n0w_A DNA repair protein RAD5 20.3 52 0.0018 17.5 1.5 15 31-45 116-130 (243)
252 1l5x_A SurviVal protein E; str 20.1 63 0.0021 18.7 1.9 41 32-74 82-128 (280)
253 3be6_A Putative iron compound- 20.0 58 0.002 18.1 1.7 15 28-42 84-98 (297)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.68 E-value=8.6e-17 Score=82.81 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=57.2
Q ss_pred CchhHHHHHHHHhcCCCcee---eecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 2 TTTNGVLLSRLMSDGSDGFD---LSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
|+++..+......+...||+ .+.++.++ +...+||+||+|+.||+++|+++++.+| .....+.+|||++|+..
T Consensus 19 DD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir-~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 19 DDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIR-ADEELKHLPVLMITAEA 97 (134)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH-HSTTTTTCCEEEEESSC
T ss_pred eCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHH-hCCCCCCCeEEEEECCC
Confidence 45555554444444455554 34455544 4566899999999999999999999999 55567889999999987
Q ss_pred chhhh
Q 039883 76 ILARI 80 (82)
Q Consensus 76 ~~~~~ 80 (82)
+.+..
T Consensus 98 ~~~~~ 102 (134)
T 3to5_A 98 KREQI 102 (134)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76543
No 2
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.52 E-value=9.8e-16 Score=77.85 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=49.6
Q ss_pred chhHHHHHHHHhcCCCceeee---cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 3 TTNGVLLSRLMSDGSDGFDLS---PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..+......+...||++. .++.++ +...+||++|+|+.||+++|+++++.+| . ..+|+|++|+..+
T Consensus 16 D~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr-~----~~ipvI~lTa~~~ 90 (123)
T 2lpm_A 16 DESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILA-E----RNVPFIFATGYGS 90 (123)
T ss_dssp SSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHH-H----TCCSSCCBCTTCT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHH-c----CCCCEEEEecCcc
Confidence 333333333333344566653 344444 4566899999999999999999999999 2 3589999998765
Q ss_pred hh
Q 039883 77 LA 78 (82)
Q Consensus 77 ~~ 78 (82)
..
T Consensus 91 ~~ 92 (123)
T 2lpm_A 91 KG 92 (123)
T ss_dssp TS
T ss_pred HH
Confidence 44
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.50 E-value=9.2e-14 Score=69.79 Aligned_cols=77 Identities=16% Similarity=0.309 Sum_probs=52.1
Q ss_pred CchhHHHHHHHHhcCCCceeee--cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLS--PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+++.............+|++. .++.++ +...+||++|+|+.||+++|+++++.++ .....+.+|+|++|+..+
T Consensus 9 dd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~-~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 9 DDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQ-EKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHH-TSTTTTTSCEEEEESCCS
T ss_pred eCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHH-hcccccCCCEEEEecCCc
Confidence 3344433333333333455554 444444 4566899999999999999999999998 333457899999998776
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 88 ~~~ 90 (122)
T 3gl9_A 88 EED 90 (122)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.42 E-value=5e-13 Score=68.18 Aligned_cols=61 Identities=20% Similarity=0.474 Sum_probs=46.4
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|++ +.++.++ +...+||+||+|+.||+++|+++++.++ .....+.+|+|++|+..+...
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr-~~~~~~~~pii~~t~~~~~~~ 92 (136)
T 3t6k_A 27 AGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVR-QHPLTKTLPILMLTAQGDISA 92 (136)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH-HSGGGTTCCEEEEECTTCHHH
T ss_pred CCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCcCCccEEEEecCCCHHH
Confidence 44554 4444444 4566899999999999999999999999 333467889999998876543
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.37 E-value=1.6e-12 Score=64.96 Aligned_cols=58 Identities=21% Similarity=0.500 Sum_probs=44.3
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|++ +.++.++ +...+||++|+|+.||+++|+++++.++ . ....|+|++|+..+...
T Consensus 25 ~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr---~-~~~~~ii~~t~~~~~~~ 87 (120)
T 3f6p_A 25 EGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVR---K-KYDMPIIMLTAKDSEID 87 (120)
T ss_dssp TTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHH---T-TCCSCEEEEEESSCHHH
T ss_pred CCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHH---h-cCCCCEEEEECCCChHH
Confidence 34444 4444444 4566899999999999999999999999 3 34689999998876543
No 6
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.34 E-value=3.3e-13 Score=72.08 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+++.............+|++ +.++.++ +...+||+||+|+.||+++|+++++.++ ...+.+|+|++|+..+
T Consensus 14 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~---~~~~~~~ii~lt~~~~ 90 (184)
T 3rqi_A 14 DDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLC---DLQPDARILVLTGYAS 90 (184)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHH---HHCTTCEEEEEESSCC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHH---hcCCCCCEEEEeCCCC
Confidence 344444433333232344554 4445544 4456799999999999999999999999 4567899999999877
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 91 ~~~ 93 (184)
T 3rqi_A 91 IAT 93 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 7
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.33 E-value=9.5e-12 Score=64.58 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=51.8
Q ss_pred chhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 3 TTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
++..............+|.+ +.++.++ +...+||+||+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.
T Consensus 15 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr-~~~~~~~~pii~~s~~~~~ 93 (154)
T 3gt7_A 15 DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLK-GQPDLRTIPVILLTILSDP 93 (154)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHH-HSTTTTTSCEEEEECCCSH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCcCCCCEEEEECCCCh
Confidence 33333333333333345554 4444444 4456899999999999999999999999 3334578999999987765
Q ss_pred hh
Q 039883 78 AR 79 (82)
Q Consensus 78 ~~ 79 (82)
+.
T Consensus 94 ~~ 95 (154)
T 3gt7_A 94 RD 95 (154)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.32 E-value=5e-12 Score=63.26 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=45.2
Q ss_pred CCceeee--cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 17 SDGFDLS--PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~~~~--~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+|.+. .++.++ +...+||++|+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 25 ~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~ 89 (124)
T 1srr_A 25 KEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMK---VIDENIRVIIMTAYGELDM 89 (124)
T ss_dssp TTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHH---HHCTTCEEEEEESSCCHHH
T ss_pred HCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH---HhCCCCCEEEEEccCchHH
Confidence 3455543 344443 4456899999999999999999999999 3467899999998766543
No 9
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.32 E-value=7.6e-13 Score=75.29 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=50.7
Q ss_pred CchhHHHHHHHHhcCCCceeee---cChhHH---hhccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLS---PTDTEE---VHVLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|+++.........+...||.+. .++.++ +...+||+||+|+.|| +++|+++++.+| . .. .+|||++|+.
T Consensus 167 dD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir-~--~~-~~piI~lT~~ 242 (286)
T 3n0r_A 167 EDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDIL-G--RM-DVPVIFITAF 242 (286)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHH-H--HT-TCCEEEEESC
T ss_pred cCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHH-h--cC-CCCEEEEeCC
Confidence 4455555444444444566554 445544 4456899999999999 799999999999 3 23 8999999997
Q ss_pred Cc
Q 039883 75 NI 76 (82)
Q Consensus 75 ~~ 76 (82)
.+
T Consensus 243 ~~ 244 (286)
T 3n0r_A 243 PE 244 (286)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.32 E-value=1e-11 Score=63.77 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhh-cCCCCCccEEEEeeCC
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQ-SFTFREIPTVIISSEN 75 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~-~~~~~~~~vi~ls~~~ 75 (82)
|++..............++.+ +.++.+ .+...+||+||+|+.||+++|+++++.++.. ....+.+|+|++|+..
T Consensus 21 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 21 DDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp CSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 334444433333333445554 444444 3456689999999999999999999999821 1345678999999877
Q ss_pred chhh
Q 039883 76 ILAR 79 (82)
Q Consensus 76 ~~~~ 79 (82)
+.+.
T Consensus 101 ~~~~ 104 (143)
T 3m6m_D 101 TPEA 104 (143)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 11
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.32 E-value=4.7e-12 Score=63.59 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=44.2
Q ss_pred ceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 19 GFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 19 ~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+....++.++ +...+||++|+|+.+|+++|+++++.++ ...+.+|+|++|+..+...
T Consensus 29 ~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~ 89 (126)
T 1dbw_A 29 AVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLG---DLKINIPSIVITGHGDVPM 89 (126)
T ss_dssp EEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHH---HTTCCCCEEEEECTTCHHH
T ss_pred EEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH---hcCCCCCEEEEECCCCHHH
Confidence 33334444443 4455799999999999999999999999 4567899999998876543
No 12
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.31 E-value=2.3e-12 Score=75.69 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=51.3
Q ss_pred CchhHHHHHHHHhcCCCceeeecC--hhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSPT--DTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..............+|++..+ +.++ +...+||+||+|+.||+++|+++++.+| ...+.+|+|++|+..+
T Consensus 12 dD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr---~~~~~~pii~lt~~~~ 88 (394)
T 3eq2_A 12 DDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIR---QTASETPIIVLSGAGV 88 (394)
T ss_dssp CSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHH---HTTCCCCEEEC---CH
T ss_pred eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHH---hhCCCCcEEEEEcCCC
Confidence 444444444444444456666544 3344 4566899999999999999999999999 4567899999998876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 89 ~~~ 91 (394)
T 3eq2_A 89 MSD 91 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 13
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.31 E-value=7.3e-12 Score=64.85 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=52.9
Q ss_pred CchhHHHHHHHHhcCCCceeeec--ChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSP--TDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..............+|.+.. +..+ .+...+||+||+|+.+|+++|+++++.++ ...+.+|+|++|+..+
T Consensus 21 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 21 DSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIH---QQYPSTTRILLTGDPD 97 (153)
T ss_dssp CSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH---HHCTTSEEEEECCCCC
T ss_pred CCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHH---hHCCCCeEEEEECCCC
Confidence 34444444444444444565543 4444 44566899999999999999999999999 4567899999998776
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 98 ~~~ 100 (153)
T 3hv2_A 98 LKL 100 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 14
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.30 E-value=5.4e-12 Score=70.13 Aligned_cols=75 Identities=17% Similarity=0.350 Sum_probs=51.7
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..............+|++ +.++.++ +...+||+||+|+.||+++|+++++.++ ...+.+|+|++|+..+
T Consensus 30 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr---~~~~~~~ii~lt~~~~ 106 (250)
T 3r0j_A 30 DDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLR---ADGIDAPALFLTARDS 106 (250)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH---HTTCCCCEEEEECSTT
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEECCCC
Confidence 334444333333233345555 4444444 4456899999999999999999999999 4567899999999876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 107 ~~~ 109 (250)
T 3r0j_A 107 LQD 109 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 15
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.30 E-value=9.3e-12 Score=62.81 Aligned_cols=45 Identities=38% Similarity=0.709 Sum_probs=38.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+||++|+|+.||+++|+++++.++ .....+.+|+|++|+..+...
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr-~~~~~~~~pii~~s~~~~~~~ 95 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVR-SDSRFKEIPIIMITAEGGKAE 95 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHH-TSTTCTTCCEEEEESCCSHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCCCCCeEEEEeCCCChHH
Confidence 699999999999999999999999 333457899999998876553
No 16
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.28 E-value=1e-11 Score=61.75 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=43.9
Q ss_pred ceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 19 GFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 19 ~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+..+.++.++ +...+||++++|+.+|+++|+++++.++ ...+.+|+|++|+..+..
T Consensus 26 ~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~ 85 (121)
T 2pl1_A 26 QVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWR---SNDVSLPILVLTARESWQ 85 (121)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH---HTTCCSCEEEEESCCCHH
T ss_pred EEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH---hcCCCCCEEEEecCCCHH
Confidence 33334444443 4456899999999999999999999999 456788999999876654
No 17
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.28 E-value=8.6e-12 Score=63.09 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=49.2
Q ss_pred chhHHHHHHHHhcCCCceeee---cChh---HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 3 TTNGVLLSRLMSDGSDGFDLS---PTDT---EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++..............++++. .+.. +.+...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+
T Consensus 9 d~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 9 DHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLR---KRQYSGIIIIVSAKND 85 (134)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHH---HTTCCSEEEEEECC--
T ss_pred CCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHH---hcCCCCeEEEEeCCCC
Confidence 333333333333333456654 2333 345566899999999999999999999999 5577899999998766
Q ss_pred hh
Q 039883 77 LA 78 (82)
Q Consensus 77 ~~ 78 (82)
.+
T Consensus 86 ~~ 87 (134)
T 3f6c_A 86 HF 87 (134)
T ss_dssp -C
T ss_pred hH
Confidence 54
No 18
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.28 E-value=6.7e-12 Score=67.84 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=51.2
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHHhh---ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEEVH---VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+++.............+|++ +.++.+++. ..+||++|+|+.||+++|+++++.++ ...+.+|+|++|+..+
T Consensus 11 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~---~~~~~~~ii~ls~~~~ 87 (208)
T 1yio_A 11 DDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLT---AISDGIPIVFITAHGD 87 (208)
T ss_dssp CSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHH---HTTCCCCEEEEESCTT
T ss_pred cCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEeCCCC
Confidence 344444433333333345555 344445443 45799999999999999999999999 4567899999998766
Q ss_pred hh
Q 039883 77 LA 78 (82)
Q Consensus 77 ~~ 78 (82)
.+
T Consensus 88 ~~ 89 (208)
T 1yio_A 88 IP 89 (208)
T ss_dssp SC
T ss_pred HH
Confidence 43
No 19
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.28 E-value=1.8e-11 Score=61.41 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCceee--ecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL--SPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~--~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+|++ +.++.+ .+...+||+||+|+.+|+.+|+++++.++ .....+.+|+|++|+..+..
T Consensus 25 ~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLR-ALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp HTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHH-HSCCSSCCEEEEEECC-CTT
T ss_pred HcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-hhhccCCCCEEEEECCcchh
Confidence 345555 444444 44566899999999999999999999999 33337889999999876654
No 20
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.28 E-value=9.6e-12 Score=63.16 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=37.3
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+||++|+|+.||+++|+++++.++ .. ..+.+|+|++|+..+...
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr-~~-~~~~~~ii~lt~~~~~~~ 95 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIR-RD-LGYTSPIVALTAFADDSN 95 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHH-HH-SCCCSCEEEEESCCSHHH
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHH-hh-cCCCCCEEEEECCCCHHH
Confidence 5799999999999999999999998 21 244679999998876543
No 21
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.27 E-value=1.3e-11 Score=63.02 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=47.1
Q ss_pred HhcCCCceeeec--ChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 13 MSDGSDGFDLSP--TDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 13 ~~~~~~~~~~~~--~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
......+|++.. ++.++ +...+||++|+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 22 ~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~---~~~~~~~ii~ls~~~~~~~ 90 (137)
T 3cfy_A 22 QYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWIN---QNDIPTSVIIATAHGSVDL 90 (137)
T ss_dssp HHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHH---HTTCCCEEEEEESSCCHHH
T ss_pred HHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH---hcCCCCCEEEEEecCcHHH
Confidence 333344565543 34443 4456899999999999999999999999 4567889999998766543
No 22
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.27 E-value=4.1e-12 Score=64.64 Aligned_cols=75 Identities=9% Similarity=0.036 Sum_probs=52.9
Q ss_pred CchhHHHHHHHHhcCCCceeeec--ChhHHhh---ccCccEEEEeCCCCC--CCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSDGSDGFDLSP--TDTEEVH---VLAVDLIITDYCMPG--MTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~d~vi~d~~~~~--~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|++..............+|++.. ++.+++. ..+||+||+|+.+|+ .+|+++++.++ ...+.+|+|++|+.
T Consensus 13 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~---~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 13 DHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLV---KRGFHLPTIVMASS 89 (136)
T ss_dssp CSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHH---HTTCCCCEEEEESS
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHH---hCCCCCCEEEEEcC
Confidence 34444444444444445666543 4445543 457999999999999 99999999999 45688999999988
Q ss_pred Cchhh
Q 039883 75 NILAR 79 (82)
Q Consensus 75 ~~~~~ 79 (82)
.+.+.
T Consensus 90 ~~~~~ 94 (136)
T 3kto_A 90 SDIPT 94 (136)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 76543
No 23
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.26 E-value=9.8e-12 Score=62.06 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=40.8
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++.+ +.++.++ +...+||++|+|+.||+++|+++++.++ .....+.+|+|++|+..+..
T Consensus 24 ~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~ 88 (124)
T 1mb3_A 24 QGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLK-EDDDLAHIPVVAVTAFAMKG 88 (124)
T ss_dssp TTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHH-HSTTTTTSCEEEEC------
T ss_pred cCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-cCccccCCcEEEEECCCCHH
Confidence 34444 3344443 4456899999999999999999999999 33345688999999875543
No 24
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.26 E-value=2.5e-11 Score=60.99 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=40.2
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+...+||++++|+.+|+++|+++++.++ .....+.+|+|++|+..+...
T Consensus 46 ~~~~~~~dlvl~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~~ 95 (129)
T 1p6q_A 46 IMAQNPHHLVISDFNMPKMDGLGLLQAVR-ANPATKKAAFIILTAQGDRAL 95 (129)
T ss_dssp HHHTSCCSEEEECSSSCSSCHHHHHHHHT-TCTTSTTCEEEECCSCCCHHH
T ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHh-cCccccCCCEEEEeCCCCHHH
Confidence 34456899999999999999999999999 322357889999998766543
No 25
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.26 E-value=1.5e-11 Score=62.67 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=46.0
Q ss_pred CceeeecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+..+.++.+ .+...+||+||+|+.+|+.+|+++++.++ .....+.+|+|++|+..+...
T Consensus 31 ~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~~ 94 (140)
T 3grc_A 31 FDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALR-RDSRTRDLAIVVVSANAREGE 94 (140)
T ss_dssp CEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH-TSGGGTTCEEEEECTTHHHHH
T ss_pred CeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH-hCcccCCCCEEEEecCCChHH
Confidence 33444445544 44566899999999999999999999999 322678899999998765543
No 26
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.26 E-value=8e-12 Score=63.28 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=44.6
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|.+ +.++.++ +...+||++|+|+.+|+++|+++++.++ ...+.+|+|++|+..+...
T Consensus 26 ~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~ 89 (132)
T 3crn_A 26 EGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAH---KLRPGMKKIMVTGYASLEN 89 (132)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHH---HHCTTSEEEEEESCCCHHH
T ss_pred CCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHH---hhCCCCcEEEEeccccHHH
Confidence 34444 4444443 4456899999999999999999999998 3456899999998766543
No 27
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.26 E-value=1.6e-11 Score=68.81 Aligned_cols=77 Identities=14% Similarity=0.290 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHHhh---cc-CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEEVH---VL-AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~-~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
|++..............++.+ +.++.+++. .. .||+||+|+.||+++|+++++.+| .......+|+|++|+..
T Consensus 131 DD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr-~~~~~~~~~ii~~s~~~ 209 (259)
T 3luf_A 131 DDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLR-ERYSKQQLAIIGISVSD 209 (259)
T ss_dssp CSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHH-HHCCTTTSEEEEEECSS
T ss_pred eCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHH-hccCCCCCeEEEEEccC
Confidence 344444433333333445554 445555443 34 389999999999999999999999 33345578999999876
Q ss_pred chhh
Q 039883 76 ILAR 79 (82)
Q Consensus 76 ~~~~ 79 (82)
+...
T Consensus 210 ~~~~ 213 (259)
T 3luf_A 210 KRGL 213 (259)
T ss_dssp SSSH
T ss_pred CHHH
Confidence 6543
No 28
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.26 E-value=3.5e-11 Score=61.33 Aligned_cols=58 Identities=24% Similarity=0.464 Sum_probs=43.3
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+|.+ +.++.++ +...+||++|+|+.+|+++|+++++.++ .....+.+|+|++|+..+
T Consensus 26 ~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~ls~~~~ 88 (138)
T 3c3m_A 26 GGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIK-TDPATRDIPVLMLTAKPL 88 (138)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH-HSTTTTTSCEEEEESSCC
T ss_pred cCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-cCcccCCCCEEEEECCCC
Confidence 34544 3344443 4456899999999999999999999999 333456789999998653
No 29
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.25 E-value=1.3e-12 Score=76.52 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=53.2
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+++.............+|.+ +.++.++ +...+||+||+|+.||+++|+++++.++ ...+.+|||++|+..+
T Consensus 7 DDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr---~~~~~~pvI~lT~~~~ 83 (368)
T 3dzd_A 7 DDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIK---ENSPDSVVIVITGHGS 83 (368)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHH---HHCTTCEEEEEECSSC
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCeEEEEeCCCC
Confidence 455555444433333344544 4445444 4566899999999999999999999999 4567899999999876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 84 ~~~ 86 (368)
T 3dzd_A 84 VDT 86 (368)
T ss_dssp CHH
T ss_pred HHH
Confidence 544
No 30
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.25 E-value=8e-12 Score=62.96 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=40.6
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+..+.++.++ +...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+...
T Consensus 32 ~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~~t~~~~~~~ 93 (130)
T 3eod_A 32 ATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIR---NRGDQTPVLVISATENMAD 93 (130)
T ss_dssp CEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHH---HTTCCCCEEEEECCCCHHH
T ss_pred ceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH---hcCCCCCEEEEEcCCCHHH
Confidence 333334444444 4456899999999999999999999999 4577899999998876653
No 31
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.24 E-value=1.5e-11 Score=62.39 Aligned_cols=54 Identities=22% Similarity=0.384 Sum_probs=43.0
Q ss_pred ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 23 SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 23 ~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+.++.++ +...+||++|+|+.||+++|+++++.++ ...+.+|+|++|+..+...
T Consensus 35 ~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~~ 91 (133)
T 3b2n_A 35 TDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIR---KKHLNIKVIIVTTFKRPGY 91 (133)
T ss_dssp ESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH---HTTCSCEEEEEESCCCHHH
T ss_pred cCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHH---HHCCCCcEEEEecCCCHHH
Confidence 3444444 4456899999999999999999999999 4567899999998876543
No 32
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.24 E-value=2.2e-11 Score=60.20 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=43.1
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.++.+ +.++.++ +...+||++++|+.+|+.+|.++++.++ ...+.+|+|++|+..+.
T Consensus 24 ~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIR---KKKKDAKIILLTAYSHY 85 (116)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH---HHCTTCCEEEEESCGGG
T ss_pred CCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH---ccCCCCeEEEEECCcch
Confidence 34444 4444443 4456899999999999999999999998 34578899999986543
No 33
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.24 E-value=7.3e-11 Score=59.54 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=44.6
Q ss_pred CCceeeecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLSPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+..+..+.+..+ .+...+||+||+|+.+|+.+|+++++.++ .....+.+|+|++|+..+..
T Consensus 27 ~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~-~~~~~~~~pii~~s~~~~~~ 90 (133)
T 3nhm_A 27 EFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFR-SEPTLKHIPVIFVSGYAPRT 90 (133)
T ss_dssp TSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHH-HSTTTTTCCEEEEESCCC--
T ss_pred CcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-hCCccCCCCEEEEeCCCcHh
Confidence 333344444444 44566899999999999999999999999 43346689999999876543
No 34
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.24 E-value=3.6e-11 Score=59.88 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=38.9
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+...+||++|+|+.+|+++|+++++.++ . .+.+|+|++|+..+..
T Consensus 41 ~~~~~~~dlvi~d~~l~~~~g~~~~~~l~---~-~~~~~ii~~s~~~~~~ 86 (122)
T 1zgz_A 41 IMQNQSVDLILLDINLPDENGLMLTRALR---E-RSTVGIILVTGRSDRI 86 (122)
T ss_dssp HHHHSCCSEEEEESCCSSSCHHHHHHHHH---T-TCCCEEEEEESSCCHH
T ss_pred HHhcCCCCEEEEeCCCCCCChHHHHHHHH---h-cCCCCEEEEECCCChh
Confidence 34456899999999999999999999999 4 5678999999876654
No 35
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.23 E-value=1.8e-11 Score=72.94 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=46.1
Q ss_pred CceeeecChhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+..+.++.+++ ...+||+||+|+.||+++|+++++.++ .....+.+|||++|+..+.+.
T Consensus 26 ~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~-~~~~~~~~pii~lt~~~~~~~ 89 (459)
T 1w25_A 26 YEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLK-DDPTTRHIPVVLITALDGRGD 89 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH-HSTTTTTSCEEEEECSSCHHH
T ss_pred CEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHh-cCcccCCCCEEEEECCCCHHH
Confidence 3333444555444 455899999999999999999999999 333456899999999877654
No 36
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.23 E-value=2e-11 Score=61.96 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=45.9
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+..+.+..++ +...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 32 ~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~ 93 (137)
T 3hdg_A 32 PEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIK---AGGAKPYVIVISAFSEMKY 93 (137)
T ss_dssp SCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH---HTTCCCEEEECCCCCCHHH
T ss_pred cEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCcEEEEecCcChHH
Confidence 334445555543 4556899999999999999999999999 4568899999998876543
No 37
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.23 E-value=1.2e-11 Score=61.46 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=44.9
Q ss_pred CCceee---ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDL---SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~---~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+|++ +.++.++ +...+||++++|+.+|+.+|.++++.++ ...+.+|+|++|+..+..
T Consensus 24 ~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~ 88 (120)
T 1tmy_A 24 KAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIM---KIDPNAKIIVCSAMGQQA 88 (120)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHH---HHCTTCCEEEEECTTCHH
T ss_pred hcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHH---hhCCCCeEEEEeCCCCHH
Confidence 445653 3344443 4456899999999999999999999998 345788999999876654
No 38
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.23 E-value=4.8e-11 Score=61.57 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=43.8
Q ss_pred ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 23 SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 23 ~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+.+..++ +...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 52 ~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~~ 108 (150)
T 4e7p_A 52 AKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIR---SEKLETKVVVVTTFKRAGY 108 (150)
T ss_dssp ESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHH---HTTCSCEEEEEESCCCHHH
T ss_pred ECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCeEEEEeCCCCHHH
Confidence 4444444 4566899999999999999999999999 4578899999998876543
No 39
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.22 E-value=2.6e-11 Score=66.15 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=45.5
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.++++ +.++.++ +...+||++|+|+.+|+++|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 25 ~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr---~~~~~~~ii~ls~~~~~~~ 88 (225)
T 1kgs_A 25 EMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMR---ESGVNTPVLMLTALSDVEY 88 (225)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH---HTTCCCCEEEEESSCHHHH
T ss_pred CCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEeCCCCHHH
Confidence 44544 4444444 4456899999999999999999999999 4567899999998876543
No 40
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.22 E-value=2.8e-11 Score=61.34 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=44.1
Q ss_pred CceeeecChhHH---hhccC-ccEEEEeCCCCCCCHHHHHHHHHhhcCC-CCCccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTEE---VHVLA-VDLIITDYCMPGMTGCELIKKIKLQSFT-FREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~-~d~vi~d~~~~~~~~~~~~~~l~~~~~~-~~~~~vi~ls~~~~~~~ 79 (82)
..+..+.+..++ +.... ||+||+|+.+|+.+|+++++.++ .. .+.+|+|++|+..+.+.
T Consensus 32 ~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~~ii~~s~~~~~~~ 95 (136)
T 3hdv_A 32 IDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIR---ASERAALSIIVVSGDTDVEE 95 (136)
T ss_dssp CCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHH---TSTTTTCEEEEEESSCCHHH
T ss_pred ceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHH---hcCCCCCCEEEEeCCCChHH
Confidence 333334444443 33444 99999999999999999999999 44 68899999998876543
No 41
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.22 E-value=2.3e-12 Score=65.50 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=51.1
Q ss_pred chhHHHHHHHHhcCCCc-eeeec--ChhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 3 TTNGVLLSRLMSDGSDG-FDLSP--TDTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++..............+ |++.. ++.+++ ...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+
T Consensus 22 d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~ 98 (135)
T 3snk_A 22 SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEAR---ALWATVPLIAVSDELT 98 (135)
T ss_dssp SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHH---GGGTTCCEEEEESCCC
T ss_pred CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHH---hhCCCCcEEEEeCCCC
Confidence 33343333333333345 65543 334444 455799999999999999999999999 4566899999999876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 99 ~~~ 101 (135)
T 3snk_A 99 SEQ 101 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 42
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.22 E-value=7.5e-11 Score=60.81 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=38.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+||++|+|+.||+++|+++++.++ .....+.+|+|++|+..+...
T Consensus 60 ~~~dlillD~~lp~~~g~~l~~~l~-~~~~~~~~piiils~~~~~~~ 105 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGREVLAEIK-QNPDLKRIPVVVLTTSHNEDD 105 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHH-HCTTTTTSCEEEEESCCCHHH
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHH-hCcCcCCCeEEEEECCCChHH
Confidence 4699999999999999999999999 333346889999998776543
No 43
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.21 E-value=4.8e-11 Score=59.89 Aligned_cols=59 Identities=20% Similarity=0.474 Sum_probs=44.0
Q ss_pred eeeecChhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 20 FDLSPTDTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 20 ~~~~~~~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+..+.++.+++ ...+||++++|+.+|+++|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 32 v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~-~~~~~~~~~ii~~s~~~~~~~ 93 (128)
T 1jbe_A 32 VEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIR-AXXAMSALPVLMVTAEAKKEN 93 (128)
T ss_dssp EEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHH-C--CCTTCCEEEEESSCCHHH
T ss_pred EEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-hhcccCCCcEEEEecCccHHH
Confidence 34444555443 455799999999999999999999999 322457889999998766543
No 44
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.21 E-value=2.4e-11 Score=66.01 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=35.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhc-CCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQS-FTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~-~~~~~~~vi~ls~~~ 75 (82)
+||+||+|+.||+++|+++++.++... ...+.+|+|++|+..
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 799999999999999999999999211 125789999999876
No 45
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.21 E-value=4.7e-11 Score=60.99 Aligned_cols=46 Identities=30% Similarity=0.323 Sum_probs=39.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcC--CCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSF--TFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~--~~~~~~vi~ls~~~~~~~ 79 (82)
.+||+||+|+.+|+++|+++++.++ ... ..+.+|+|++|+..+...
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~~~~~~ii~~t~~~~~~~ 106 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFK-QHFQPMKNKSIVCLLSSSLDPRD 106 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHH-HHCGGGTTTCEEEEECSSCCHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-HhhhhccCCCeEEEEeCCCChHH
Confidence 7799999999999999999999999 322 568899999998876544
No 46
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.21 E-value=4.1e-11 Score=65.66 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=44.9
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++++ +.++.++ +...+||++|+|+.+|+++|+++++.++ ...+.+|+|++|+..+.+
T Consensus 30 ~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~---~~~~~~~ii~lt~~~~~~ 92 (233)
T 1ys7_A 30 SGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALR---AMDNDVPVCVLSARSSVD 92 (233)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHH---HTTCCCCEEEEECCCTTT
T ss_pred CCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCCEEEEEcCCCHH
Confidence 34544 3344444 4456899999999999999999999999 446789999999876654
No 47
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.21 E-value=3.1e-11 Score=61.66 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=39.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~~ 91 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIK---KITPHMAVIILTGHGDLDN 91 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHH---HHCTTCEEEEEECTTCHHH
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCeEEEEECCCCHHH
Confidence 45899999999999999999999999 4567899999998876543
No 48
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.21 E-value=7.4e-11 Score=64.07 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHhcCCC-ceee---ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSDGSD-GFDL---SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~-~~~~---~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|+++............. ++.+ +.++.++ +...+||++|+|+.||+++|+++++.++ ...+.+|+|++|+.
T Consensus 12 dd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr---~~~~~~~ii~ls~~ 88 (215)
T 1a04_A 12 DDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLR---EKSLSGRIVVFSVS 88 (215)
T ss_dssp CSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHH---HSCCCSEEEEEECC
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCcEEEEECC
Confidence 44444444333333333 4655 3344444 4456899999999999999999999999 45678999999988
Q ss_pred Cchhh
Q 039883 75 NILAR 79 (82)
Q Consensus 75 ~~~~~ 79 (82)
.+.+.
T Consensus 89 ~~~~~ 93 (215)
T 1a04_A 89 NHEED 93 (215)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 76543
No 49
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.21 E-value=1.7e-11 Score=61.36 Aligned_cols=60 Identities=25% Similarity=0.452 Sum_probs=44.4
Q ss_pred ceee--ecChhHHhh---ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 19 GFDL--SPTDTEEVH---VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 19 ~~~~--~~~~~~~~~---~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
++.+ ..++.+++. ..+||++|+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 26 g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~~ 90 (127)
T 2jba_A 26 GFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLR-RESMTRDIPVVMLTARGEEED 90 (127)
T ss_dssp TCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHH-TSTTTTTSCEEEEEETTHHHH
T ss_pred CceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH-hCcccCCCCEEEEeCCCCHHH
Confidence 4444 444445443 44799999999999999999999999 322337899999998876543
No 50
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.21 E-value=3.3e-11 Score=61.40 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=43.2
Q ss_pred ceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 19 GFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 19 ~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+..+.++.++ +...+||++|+|+.||+++|+++++.++ ...+..|+|++|+..+..
T Consensus 26 ~v~~~~~~~~a~~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~ 85 (139)
T 2jk1_A 26 DVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVR---ERWPETVRIIITGYTDSA 85 (139)
T ss_dssp CEEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHHHHHHHHH---HHCTTSEEEEEESCTTCH
T ss_pred eEEEcCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHH---HhCCCCcEEEEeCCCChH
Confidence 33334444443 4456899999999999999999999999 346678999999876543
No 51
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.20 E-value=4.6e-11 Score=60.49 Aligned_cols=57 Identities=21% Similarity=0.434 Sum_probs=43.4
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.+|.+ +.++.++ +...+||++|+|+.+|+++|+++++.++ ...+.+|+|++|+..+.
T Consensus 26 ~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~ 87 (136)
T 1mvo_A 26 SGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLR---QQKLMFPILMLTAKDEE 87 (136)
T ss_dssp TTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH---HTTCCCCEEEEECTTCC
T ss_pred CCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHH---cCCCCCCEEEEECCCCH
Confidence 34444 4444444 4455899999999999999999999999 44567899999987654
No 52
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.20 E-value=6.5e-11 Score=60.32 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=45.0
Q ss_pred ceee--ecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 19 GFDL--SPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 19 ~~~~--~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+|++ +.+..+ .+...+||++|+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.+
T Consensus 31 g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~-~~~~~~~~pii~~s~~~~~~ 94 (142)
T 3cg4_A 31 GFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAIL-DNSLEQGIAIVMLTAKNAPD 94 (142)
T ss_dssp TCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHH-HTTCCTTEEEEEEECTTCCC
T ss_pred CeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-hhcccCCCCEEEEECCCCHH
Confidence 4444 444444 34566899999999999999999999999 32367889999999876543
No 53
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.20 E-value=5.6e-11 Score=60.57 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=35.6
Q ss_pred eeecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 21 DLSPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 21 ~~~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+.+..+ .+...+||+||+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 30 ~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~~ 90 (140)
T 3n53_A 30 IESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLK-RSKGLKNVPLILLFSSEHKEA 90 (140)
T ss_dssp EEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHH-TSTTCTTCCEEEEECC----C
T ss_pred EEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHH-cCcccCCCCEEEEecCCCHHH
Confidence 33444444 34566899999999999999999999999 322238899999998766543
No 54
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.20 E-value=5.1e-11 Score=61.00 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=38.8
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+...+||++|+|+.||+++|+++++.++ ...+.+|+|++|+..+.+
T Consensus 45 ~~~~~~dlvllD~~lp~~~g~~l~~~l~---~~~~~~~ii~ls~~~~~~ 90 (141)
T 3cu5_A 45 ALKHPPNVLLTDVRMPRMDGIELVDNIL---KLYPDCSVIFMSGYSDKE 90 (141)
T ss_dssp HTTSCCSEEEEESCCSSSCHHHHHHHHH---HHCTTCEEEEECCSTTTC
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCcEEEEeCCCcHH
Confidence 3455799999999999999999999999 446788999999876543
No 55
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.20 E-value=4.6e-11 Score=69.18 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHhcC-CCceeee--cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 2 TTTNGVLLSRLMSDG-SDGFDLS--PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 2 d~~~~~~~~~~~~~~-~~~~~~~--~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
|+++........... ..++.+. .++.++ +...+||+||+|+.||+++|+++++.++ .....+.+|+|++|+..
T Consensus 25 dD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~G~~~~~~l~-~~~~~~~~~ii~~s~~~ 103 (358)
T 3bre_A 25 DDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYR-GNPATRDIPIIVLSTKE 103 (358)
T ss_dssp CSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHT-TSTTTTTSCEEEEESSC
T ss_pred ECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHh-cCcccCCCcEEEEeCCC
Confidence 344444444443332 3466654 344444 4455899999999999999999999999 32335689999999887
Q ss_pred chhh
Q 039883 76 ILAR 79 (82)
Q Consensus 76 ~~~~ 79 (82)
+.+.
T Consensus 104 ~~~~ 107 (358)
T 3bre_A 104 EPTV 107 (358)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6554
No 56
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.20 E-value=2.5e-11 Score=63.19 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=45.9
Q ss_pred CCceeee---cChhH---Hhhcc--CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 17 SDGFDLS---PTDTE---EVHVL--AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~~~~---~~~~~---~~~~~--~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+|++. .+..+ .+... +||+||+|+.+++++|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 58 ~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr---~~~~~~~ii~ls~~~~~~~ 125 (157)
T 3hzh_A 58 SEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIM---EFDKNARVIMISALGKEQL 125 (157)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHH---HHCTTCCEEEEESCCCHHH
T ss_pred hCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHH---hhCCCCcEEEEeccCcHHH
Confidence 3456544 34443 34455 789999999999999999999999 4568899999998866554
No 57
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.20 E-value=4.8e-11 Score=59.50 Aligned_cols=58 Identities=17% Similarity=0.448 Sum_probs=43.5
Q ss_pred CCceeee--cChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLS--PTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~--~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+|++. .++.+ .+...+||++|+|+.+|+.+|+++++.++ . . +.+|+|++|+..+..
T Consensus 25 ~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~-~--~-~~~~ii~~s~~~~~~ 87 (123)
T 1xhf_A 25 AEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELR-E--Q-ANVALMFLTGRDNEV 87 (123)
T ss_dssp TTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHH-H--H-CCCEEEEEESCCSHH
T ss_pred hCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHH-h--C-CCCcEEEEECCCChH
Confidence 3455543 34443 34456899999999999999999999999 2 2 578999999876654
No 58
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.20 E-value=9.8e-12 Score=63.41 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCceeeecChhHH---hhc-cCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 17 SDGFDLSPTDTEE---VHV-LAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~~~~~~~~~~---~~~-~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+..+..+.++.++ +.. .+||+||+|+.+| +.+|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 29 ~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~-~~~~~~~~~ii~ls~~~~~~~ 95 (140)
T 3lua_A 29 EYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR-NNSRTANTPVIIATKSDNPGY 95 (140)
T ss_dssp CCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH-HSGGGTTCCEEEEESCCCHHH
T ss_pred CccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH-hCcccCCCCEEEEeCCCCHHH
Confidence 3333434445444 445 7899999999999 999999999999 333678999999998876544
No 59
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.20 E-value=4.8e-11 Score=61.76 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=44.7
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+|++ +.+..++ +...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+..
T Consensus 30 ~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 92 (154)
T 2rjn_A 30 LGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVA---KSYPDIERVVISGYADAQ 92 (154)
T ss_dssp TTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHH---HHCTTSEEEEEECGGGHH
T ss_pred cCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH---HhCCCCcEEEEecCCCHH
Confidence 45555 4444444 4455799999999999999999999999 446789999999876644
No 60
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.20 E-value=2.6e-11 Score=67.58 Aligned_cols=74 Identities=12% Similarity=0.310 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..............++.+ +.++.++ +...+||+||+|+.||+++|+++++.++ . .+.+|||++|+..+
T Consensus 44 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr---~-~~~~~iI~lt~~~~ 119 (249)
T 3q9s_A 44 EDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLR---K-NSALPIIVLTARDT 119 (249)
T ss_dssp CSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHH---T-TCCCCEEEEESCCS
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHH---c-CCCCCEEEEECCCC
Confidence 344444433333333445544 4444444 4456899999999999999999999999 3 56789999999876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 120 ~~~ 122 (249)
T 3q9s_A 120 VEE 122 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 61
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.19 E-value=7.1e-11 Score=59.50 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=43.9
Q ss_pred ceeee---cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 19 GFDLS---PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 19 ~~~~~---~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
++.+. .++.++ +...+||++|+|+.||+++|+++++.++ .. ..+..|+|++|+..+.+.
T Consensus 27 ~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~-~~-~~~~~~ii~ls~~~~~~~ 91 (130)
T 1dz3_A 27 DMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIR-AG-FEHQPNVIMLTAFGQEDV 91 (130)
T ss_dssp TEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH-HH-CSSCCEEEEEEETTCHHH
T ss_pred CceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH-hc-CCCCCcEEEEecCCCHHH
Confidence 66543 344443 4456899999999999999999999999 21 246778999998766543
No 62
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.19 E-value=3.5e-11 Score=61.57 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=45.5
Q ss_pred eeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 20 FDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 20 ~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+..+.+..++ +...+||+||+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr-~~~~~~~~pii~~s~~~~~~~ 95 (144)
T 3kht_A 34 LEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVR-KPGANQHTPIVILTDNVSDDR 95 (144)
T ss_dssp EEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHH-SSSTTTTCCEEEEETTCCHHH
T ss_pred EEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHH-hcccccCCCEEEEeCCCCHHH
Confidence 3334455544 4456899999999999999999999999 323678899999998776554
No 63
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.18 E-value=1.9e-11 Score=72.00 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|++..............+|++ +.++.++ +...+||+||+|+.||+++|+++++.++ ...+.+|+|++|+..+
T Consensus 7 DDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr---~~~~~~pvIvlT~~~~ 83 (387)
T 1ny5_A 7 EDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIK---ERSPETEVIVITGHGT 83 (387)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHH---HHCTTSEEEEEEETTC
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCcEEEEeCCCC
Confidence 344444433333222334444 4444444 4456899999999999999999999999 4567899999999876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 84 ~~~ 86 (387)
T 1ny5_A 84 IKT 86 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 64
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.18 E-value=4.5e-11 Score=60.85 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=43.1
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++.+ +.++.++ +...+||++|+|+.+|+++|+++++.++ ... .+|+|++|+..+.+
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~---~~~-~~~ii~ls~~~~~~ 88 (136)
T 2qzj_A 27 KGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIR---NVT-TCPIVYMTYINEDQ 88 (136)
T ss_dssp TTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHH---TTC-CCCEEEEESCCCHH
T ss_pred CCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHc---cCC-CCCEEEEEcCCCHH
Confidence 44544 4444444 4456899999999999999999999999 333 78999999876654
No 65
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.17 E-value=9e-11 Score=63.37 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred chhHHHHHHHHhcCCCceeee---cChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 3 TTNGVLLSRLMSDGSDGFDLS---PTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
++..............+|++. .++.++ +...+||+||+|+.||+++|+++++.++ ...+ .|+|++|+..+
T Consensus 21 d~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~---~~~~-~pii~lt~~~~ 96 (205)
T 1s8n_A 21 DEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIA---SKRI-APIVVLTAFSQ 96 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH---HTTC-SCEEEEEEGGG
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHH---hcCC-CCEEEEecCCC
Confidence 344433333333333456554 344443 4456899999999999999999999999 2333 49999998876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 97 ~~~ 99 (205)
T 1s8n_A 97 RDL 99 (205)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 66
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.17 E-value=9.8e-11 Score=59.51 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=42.7
Q ss_pred CceeeecChhHH---hhc-cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe-eCCch
Q 039883 18 DGFDLSPTDTEE---VHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS-SENIL 77 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~-~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls-~~~~~ 77 (82)
..+..+.++.++ +.. ..||++|+|+.+|+.+|+++++.++ ...+.+|+|++| +..+.
T Consensus 40 ~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 101 (138)
T 2b4a_A 40 AEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVK---EQTKQPSVLILTTGRHEL 101 (138)
T ss_dssp CEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHT---TSSSCCEEEEEESCC--C
T ss_pred CEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCCEEEEECCCCCH
Confidence 333334444443 456 7899999999999999999999999 567789999999 76544
No 67
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.16 E-value=5.1e-11 Score=61.12 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=46.0
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|++ +.+..++ +...+||+||+|+.+++.+|+++++.++ .....+.+|+|++|+..+...
T Consensus 31 ~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~-~~~~~~~~pii~ls~~~~~~~ 96 (147)
T 2zay_A 31 EGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLK-KNPQTASIPVIALSGRATAKE 96 (147)
T ss_dssp HTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH-TSTTTTTSCEEEEESSCCHHH
T ss_pred cCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHH-cCcccCCCCEEEEeCCCCHHH
Confidence 34544 4444443 4456899999999999999999999999 322678899999998776543
No 68
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.16 E-value=4.7e-10 Score=57.86 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=40.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+||+||+|+.+|+++|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr-~~~~~~~~pii~~t~~~~~~~ 103 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVK-ENPHTRRSPVVILTTTDDQRE 103 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHH-HSTTTTTSCEEEEESCCCHHH
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHH-hcccccCCCEEEEecCCCHHH
Confidence 45799999999999999999999999 433678899999998876544
No 69
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.16 E-value=5.9e-11 Score=58.81 Aligned_cols=56 Identities=23% Similarity=0.473 Sum_probs=42.6
Q ss_pred ceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 19 GFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 19 ~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+|++ +.++.++ +...+||++++|+.+|+.+|+++++.++ . .+..|+|++|+..+..
T Consensus 25 ~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~-~---~~~~~ii~~s~~~~~~ 85 (120)
T 2a9o_A 25 GYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIR-K---TSSVPILMLSAKDSEF 85 (120)
T ss_dssp TCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH-H---HCCCCEEEEESCCSHH
T ss_pred CcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHH-h---CCCCCEEEEecCCchH
Confidence 4444 4444443 4455899999999999999999999999 2 3578999999876654
No 70
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.15 E-value=1.2e-10 Score=59.26 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=45.3
Q ss_pred eeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 20 FDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 20 ~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+..+.+..++ +...+||+||+|+.+++.+|+++++.++ .....+.+|+|++|+..+..
T Consensus 37 v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~s~~~~~~ 97 (143)
T 3cnb_A 37 IKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIK-STPATANIIVIAMTGALTDD 97 (143)
T ss_dssp EEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHH-TSTTTTTSEEEEEESSCCHH
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHH-hCccccCCcEEEEeCCCCHH
Confidence 4445555543 4556899999999999999999999999 32257889999999877654
No 71
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.15 E-value=9.2e-11 Score=59.04 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=44.0
Q ss_pred Cceee--ecChhH---Hhhcc-CccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTE---EVHVL-AVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~---~~~~~-~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+|++ +.+..+ .+... +||++|+|+.+|+ .+|+++++.++ ...+.+|+|++|+..+..
T Consensus 28 ~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~ 92 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAR---EIDPNMPIVYISGHAALE 92 (132)
T ss_dssp TTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHH---HHCTTCCEEEEESSCCTT
T ss_pred cCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHH---hcCCCCCEEEEeCCccHH
Confidence 34444 444443 34555 7999999999997 99999999999 345789999999876654
No 72
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.15 E-value=8.2e-11 Score=60.04 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=42.9
Q ss_pred Cceee--ecChhHH---hhc-cCccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHV-LAVDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~-~~~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+|++ +.++.++ +.. ..||+||+|+.+|+ .+|+++++.++ . .+.+|+|++|+..+.+
T Consensus 28 ~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~-~---~~~~~ii~ls~~~~~~ 91 (140)
T 3h5i_A 28 YGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQ-Q---ISELPVVFLTAHTEPA 91 (140)
T ss_dssp TTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHH-H---HCCCCEEEEESSSSCC
T ss_pred cCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHH-h---CCCCCEEEEECCCCHH
Confidence 34554 4444444 344 57999999999985 99999999999 2 2688999999876654
No 73
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.15 E-value=1.4e-11 Score=68.83 Aligned_cols=59 Identities=15% Similarity=0.322 Sum_probs=44.9
Q ss_pred CCceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+..+..+.++.++ +...+||+||+|+.||+++|+++++.+| ...+.+|||++|+..+.+
T Consensus 153 g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir---~~~~~~piI~lt~~~~~~ 214 (254)
T 2ayx_A 153 GYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIR---QLGLTLPVIGVTANALAE 214 (254)
T ss_dssp TSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHH---HHHCCSCEEEEESSTTSH
T ss_pred CCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHH---hcCCCCcEEEEECCCCHH
Confidence 3344444555544 4456899999999999999999999999 345679999999876544
No 74
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.15 E-value=1.8e-10 Score=59.48 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=51.5
Q ss_pred chhHHHHHHHHhcCC-Cceeee---cChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 3 TTNGVLLSRLMSDGS-DGFDLS---PTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++............. .+|.+. .+..+ .+...+||+||+|+.+++.+|.++++.++ ...+.+|+|++|+..
T Consensus 13 d~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 13 DHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIR---QWDGAARILIFTMHQ 89 (153)
T ss_dssp SCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHH---HHCTTCCEEEEESCC
T ss_pred CcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH---HhCCCCeEEEEECCC
Confidence 334444333333333 577654 23333 34566899999999999999999999999 446788999999876
Q ss_pred chhh
Q 039883 76 ILAR 79 (82)
Q Consensus 76 ~~~~ 79 (82)
+.+.
T Consensus 90 ~~~~ 93 (153)
T 3cz5_A 90 GSAF 93 (153)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
No 75
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.15 E-value=1.2e-10 Score=59.15 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=49.7
Q ss_pred chhHHHHHHHHhcCCCceeee--cChhH---HhhccCccEEEEeCCCC-----CCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 3 TTNGVLLSRLMSDGSDGFDLS--PTDTE---EVHVLAVDLIITDYCMP-----GMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~d~vi~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
++..............++++. .+..+ .+...+||++|+|+.++ +.+|+++++.++ ...+.+|+|++|
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~---~~~~~~~ii~ls 87 (140)
T 2qr3_A 11 DNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIK---RQYRDLPVVLFT 87 (140)
T ss_dssp SCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHH---HHCTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHH---hhCcCCCEEEEE
Confidence 333333333333334455554 34443 44566899999999999 999999999999 446789999999
Q ss_pred eCCchh
Q 039883 73 SENILA 78 (82)
Q Consensus 73 ~~~~~~ 78 (82)
+..+.+
T Consensus 88 ~~~~~~ 93 (140)
T 2qr3_A 88 AYADID 93 (140)
T ss_dssp EGGGHH
T ss_pred CCCCHH
Confidence 876654
No 76
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.15 E-value=1.7e-10 Score=58.36 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=38.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..||++|+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~-~~~~~~~~pii~ls~~~~~~~ 99 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIK-SDPTLKRIPVVVLSTSINEDD 99 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHH-HSTTGGGSCEEEEESCCCHHH
T ss_pred CCCcEEEEecCCCcccHHHHHHHHH-cCcccccccEEEEecCCcHHH
Confidence 6799999999999999999999999 322237899999998776543
No 77
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.14 E-value=1.6e-10 Score=59.62 Aligned_cols=58 Identities=22% Similarity=0.440 Sum_probs=44.0
Q ss_pred ceee--ecChhHH---hhccC-ccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 19 GFDL--SPTDTEE---VHVLA-VDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 19 ~~~~--~~~~~~~---~~~~~-~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
++++ +.+..++ +.... ||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 27 ~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~ 90 (151)
T 3kcn_A 27 DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKAR---LISPNSVYLMLTGNQDLTT 90 (151)
T ss_dssp TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHH---HHCSSCEEEEEECGGGHHH
T ss_pred CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHH---hcCCCcEEEEEECCCCHHH
Confidence 4554 4444444 33444 59999999999999999999999 4567899999998776543
No 78
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.13 E-value=2.1e-10 Score=59.22 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=43.9
Q ss_pred ecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 23 SPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 23 ~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
+.+..+ .+...+||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 47 ~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~~ 103 (152)
T 3eul_A 47 ADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVR---SYELPTRVLLISAHDEPAI 103 (152)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHH---HTTCSCEEEEEESCCCHHH
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCeEEEEEccCCHHH
Confidence 444444 44566899999999999999999999999 4578899999998876554
No 79
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.13 E-value=1e-10 Score=57.98 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=43.6
Q ss_pred CCceeeec--ChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 17 SDGFDLSP--TDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 17 ~~~~~~~~--~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..++.+.. ++.++ +...+||++++|+.+|+++|+++++.++ . .+..|+|++|+..+..
T Consensus 23 ~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~---~-~~~~~ii~~s~~~~~~ 85 (121)
T 1zh2_A 23 GDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLR---Q-WSAVPVIVLSARSEES 85 (121)
T ss_dssp TTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHH---T-TCCCCEEEEESCCSHH
T ss_pred cCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHH---h-CCCCcEEEEECCCCHH
Confidence 34555543 33443 3455899999999999999999999999 2 4678999999876654
No 80
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.13 E-value=2.4e-11 Score=62.33 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=38.8
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+||+||+|+.||+++|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~lt~~~~~~~ 109 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLS---RLHPGLTCLLVTTDASSQT 109 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHH---HHCTTCEEEEEESCCCHHH
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHH---HhCCCCcEEEEeCCCCHHH
Confidence 7899999999999999999999999 4567899999998876544
No 81
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.12 E-value=7.2e-11 Score=60.22 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=44.5
Q ss_pred CCceeee--cChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 17 SDGFDLS--PTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 17 ~~~~~~~--~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..+|++. .+..+ .+...+||++|+|+ +++.+|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 26 ~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~---~~~~~~pii~ls~~~~~~~ 89 (142)
T 2qxy_A 26 KDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIR---EEFPDTKVAVLSAYVDKDL 89 (142)
T ss_dssp GGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHH---HHCTTCEEEEEESCCCHHH
T ss_pred hCCCEEEEECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHH---HHCCCCCEEEEECCCCHHH
Confidence 3455554 34444 34456899999999 99999999999999 4466899999998866543
No 82
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.12 E-value=8.4e-11 Score=60.87 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=44.3
Q ss_pred CceeeecChhHHhh---ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDLSPTDTEEVH---VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+..+.+..+++. ..+||++|+|+.+++.+|+++++.++ ...+.+|+|++|+..+..
T Consensus 28 ~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~---~~~~~~pii~ls~~~~~~ 88 (155)
T 1qkk_A 28 FTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKIL---ALDPDLPMILVTGHGDIP 88 (155)
T ss_dssp CEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHH---HHCTTSCEEEEECGGGHH
T ss_pred cEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH---hhCCCCCEEEEECCCChH
Confidence 33333444455544 45799999999999999999999999 446789999999876644
No 83
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.12 E-value=3.3e-11 Score=66.01 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=39.1
Q ss_pred hccCccEEEEeCCCCCCCHHHHHHHHHhhcC-CCCCccEEEEeeCCchh
Q 039883 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSF-TFREIPTVIISSENILA 78 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~-~~~~~~vi~ls~~~~~~ 78 (82)
...+||+||+|+.||+++|+++++.++ . ..+.+|+|++|+..+..
T Consensus 51 ~~~~~dlvllD~~mp~~~G~~~~~~lr---~~~~~~~~ii~lt~~~~~~ 96 (225)
T 3klo_A 51 ESRSIQMLVIDYSRISDDVLTDYSSFK---HISCPDAKEVIINCPQDIE 96 (225)
T ss_dssp GGGGCCEEEEEGGGCCHHHHHHHHHHH---HHHCTTCEEEEEEECTTCC
T ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHH---HhhCCCCcEEEEECCcchh
Confidence 455799999999999999999999999 4 57789999999887644
No 84
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.11 E-value=1.8e-10 Score=58.96 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=38.1
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
..||++|+|+.+|+.+|+++++.++ .....+.+|+|++|+..+.+.
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~t~~~~~~~ 106 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIK-QDEVLKKIPVVIMTTSSNPKD 106 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHT-TSTTGGGSCEEEEESCCCHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hCcccCCCeEEEEeCCCCHHH
Confidence 6799999999999999999999999 222237899999998776543
No 85
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.10 E-value=2.2e-10 Score=63.22 Aligned_cols=57 Identities=26% Similarity=0.547 Sum_probs=43.4
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.+|++ +.++.++ +...+||++|+|+.+|+++|+++++.++ .. +.+|+|++|+..+..
T Consensus 28 ~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr---~~-~~~~ii~lt~~~~~~ 89 (238)
T 2gwr_A 28 EGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLR---AD-SGVPIVMLTAKTDTV 89 (238)
T ss_dssp TTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH---TT-CCCCEEEEEETTCCS
T ss_pred CCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH---hC-CCCcEEEEeCCCCHH
Confidence 34444 4444444 4456899999999999999999999999 33 378999999876654
No 86
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.10 E-value=4.4e-10 Score=56.55 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=39.7
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..+..+.+..++ +...+||+||+|+.+|+.+|.++++.++ .....+.+++++++....
T Consensus 31 ~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~-~~~~~~~~~ii~~~~~~~ 91 (132)
T 3lte_A 31 WQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLR-QNKVANQPKILVVSGLDK 91 (132)
T ss_dssp CEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHH-TTTCSSCCEEEEECCSCS
T ss_pred cEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH-hcCccCCCeEEEEeCCCh
Confidence 333344444443 4566899999999999999999999999 322224566666665443
No 87
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.08 E-value=4.9e-11 Score=65.41 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHhcCCCc-eee---ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSDGSDG-FDL---SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~-~~~---~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|+++.............+ |.+ +.++.++ +...+||+||+|+.||+++|+++++.++ ...+.+|+|++|+.
T Consensus 8 dd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr---~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 8 DDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLL---SRMPDLRCLILTSY 84 (225)
T ss_dssp CSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHH---HHCTTCEEEEGGGS
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH---HhCCCCcEEEEECC
Confidence 344444433333333333 663 3344443 4456899999999999999999999999 44678999999988
Q ss_pred Cchhh
Q 039883 75 NILAR 79 (82)
Q Consensus 75 ~~~~~ 79 (82)
.+.+.
T Consensus 85 ~~~~~ 89 (225)
T 3c3w_A 85 TSDEA 89 (225)
T ss_dssp SSHHH
T ss_pred CCHHH
Confidence 76543
No 88
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.06 E-value=7.1e-10 Score=54.45 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=43.3
Q ss_pred CceeeecChhH---HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 18 DGFDLSPTDTE---EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 18 ~~~~~~~~~~~---~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..+..+.+..+ .+...+||++++|+.+++.+|.++++.++ .....+.+|+|++++..+.
T Consensus 26 ~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~-~~~~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 26 FKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLR-EHQADPHPPLVLFLGEPPV 87 (119)
T ss_dssp CEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHH-HTCCCSSCCCEEEESSCCS
T ss_pred cEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH-hccccCCCCEEEEeCCCCc
Confidence 33333444443 34556899999999999999999999999 3223478999999987543
No 89
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.05 E-value=2.1e-10 Score=62.75 Aligned_cols=57 Identities=18% Similarity=0.510 Sum_probs=43.4
Q ss_pred Cceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++++ +.++.++ +...+||++|+|+.+|+++|+++++.++ . .+.+|+|++|+..+..
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~---~-~~~~~ii~lt~~~~~~ 88 (230)
T 2oqr_A 27 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLR---A-RSSVPVIMVTARDSEI 88 (230)
T ss_dssp TTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH---H-HCSCSEEEEECCHHHH
T ss_pred CCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHH---c-CCCCCEEEEeCCCcHH
Confidence 34444 4444444 4455899999999999999999999999 2 2678999999876654
No 90
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.04 E-value=6.5e-10 Score=56.62 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=42.3
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhc--CCCCCccEEEEeeCCc
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQS--FTFREIPTVIISSENI 76 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~--~~~~~~~vi~ls~~~~ 76 (82)
..+..+.++.++ +...+||++|+|+.+|+++|+++++.++... ...+.+|++++++...
T Consensus 35 ~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~ 98 (140)
T 3c97_A 35 NDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTI 98 (140)
T ss_dssp SEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCC
T ss_pred CceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccc
Confidence 334445555544 4456899999999999999999999998211 1246789999987644
No 91
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.04 E-value=3.1e-10 Score=57.59 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=43.8
Q ss_pred Cceeee---cChhHH---hhccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLS---PTDTEE---VHVLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~---~~~~~~---~~~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|++. .+..++ +...+||++|+|+.+| +.+|+++++.++ .. +.+|+|++|+..+...
T Consensus 32 ~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~---~~-~~~~ii~ls~~~~~~~ 96 (140)
T 3cg0_A 32 LGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLA---AG-CNLPIIFITSSQDVET 96 (140)
T ss_dssp HTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHH---HH-SCCCEEEEECCCCHHH
T ss_pred CCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHH---hC-CCCCEEEEecCCCHHH
Confidence 355544 344443 4456899999999998 799999999999 23 7899999998776543
No 92
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.03 E-value=4.3e-10 Score=56.70 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=43.0
Q ss_pred ceeeecChhHHhh---ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 19 GFDLSPTDTEEVH---VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.+..+.+..+++. .. ||+||+|+.+|+.+|+++++.++ ...+.+|+|++|+..+.
T Consensus 29 ~v~~~~~~~~~~~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~ 86 (135)
T 3eqz_A 29 NVEAFQHPRAFLTLSLNK-QDIIILDLMMPDMDGIEVIRHLA---EHKSPASLILISGYDSG 86 (135)
T ss_dssp CEEEESCHHHHTTSCCCT-TEEEEEECCTTTTHHHHHHHHHH---HTTCCCEEEEEESSCHH
T ss_pred eeeeecCHHHHHHhhccC-CCEEEEeCCCCCCCHHHHHHHHH---hCCCCCCEEEEEeccch
Confidence 3444555554433 33 99999999999999999999999 45688999999987763
No 93
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.01 E-value=9.5e-11 Score=65.70 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=36.3
Q ss_pred hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
...+||++|+|+.||+++|++++++++ . ..+|||++|+..+.+.
T Consensus 45 ~~~~~dlvllD~~mP~~~G~~~~~~lr-~----~~~pvi~lt~~~~~~~ 88 (259)
T 3luf_A 45 QGDEYVVALVDLTLPDAPSGEAVKVLL-E----RGLPVVILTADISEDK 88 (259)
T ss_dssp CTTTEEEEEEESCBTTBTTSHHHHHHH-H----TTCCEEEEECC-CHHH
T ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHH-h----CCCCEEEEEccCCHHH
Confidence 344799999999999999999999999 2 2489999999876654
No 94
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.00 E-value=6.8e-10 Score=55.28 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=42.9
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCC-CCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMP-GMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~-~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+..+.+..++ +...+||++|+|+.+| +.+|.++++.++ .....+.+|+|++ +..+.+
T Consensus 30 ~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~-~~~~~~~~~ii~~-~~~~~~ 92 (127)
T 2gkg_A 30 FTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLK-KDDDLKNVPIVII-GNPDGF 92 (127)
T ss_dssp CEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHH-HSTTTTTSCEEEE-ECGGGH
T ss_pred ceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCccccCCCEEEE-ecCCch
Confidence 333334444443 4456899999999999 999999999999 3333678999999 665543
No 95
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=98.99 E-value=6.2e-09 Score=52.94 Aligned_cols=60 Identities=17% Similarity=0.406 Sum_probs=44.7
Q ss_pred ceeeecChhHH---hhc------cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 19 GFDLSPTDTEE---VHV------LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 19 ~~~~~~~~~~~---~~~------~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+..+.+..++ +.. .+||+||+|+.+|+.+|+++++.++ .....+.+|+|++++..+.+.
T Consensus 35 ~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~-~~~~~~~~~ii~ls~~~~~~~ 103 (143)
T 2qvg_A 35 KIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELR-DDSSFTDIEVFVLTAAYTSKD 103 (143)
T ss_dssp CEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHT-TSGGGTTCEEEEEESCCCHHH
T ss_pred eEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHH-cCccccCCcEEEEeCCCCHHH
Confidence 45555555544 344 6799999999999999999999999 222227899999998766543
No 96
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=98.97 E-value=4.8e-10 Score=66.17 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=40.4
Q ss_pred eeeecChhHH---hhc-cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 20 FDLSPTDTEE---VHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 20 ~~~~~~~~~~---~~~-~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+..+.++.++ +.. .+||+||+|+.||+++|+++++.++ ...+.+++|++|+..+.
T Consensus 31 v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~---~~~~~~~ii~~s~~~~~ 89 (400)
T 3sy8_A 31 ILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHAS---LSGKVHSVILSSEVDPI 89 (400)
T ss_dssp EEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHH---HHTCEEEEEESCCCCGG
T ss_pred EEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCceEEEEcCchHH
Confidence 3334455544 445 3799999999999999999999999 34566777777765543
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=98.96 E-value=4.4e-09 Score=55.01 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=39.8
Q ss_pred ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 23 SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 23 ~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+.++.++ +...+||+||+|+.+|+++|+++++.++ ...+ .|+|++++..+.
T Consensus 57 ~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr---~~~~-~~ii~~s~~~~~ 110 (164)
T 3t8y_A 57 AKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIM---KKAP-TRVIMVSSLTEE 110 (164)
T ss_dssp ESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH---HHSC-CEEEEEESSCCT
T ss_pred cCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH---hcCC-ceEEEEecCCcc
Confidence 3444444 4556899999999999999999999999 3344 799999986553
No 98
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=98.96 E-value=3.1e-11 Score=60.09 Aligned_cols=58 Identities=28% Similarity=0.478 Sum_probs=43.2
Q ss_pred Cceee--ecChhHHh---hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEEV---HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~~---~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++.+ +.++.+++ ...+||++++|+.+|+.+|+++++.++ ...+.+|+|++|+..+.+
T Consensus 26 ~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~---~~~~~~~ii~~s~~~~~~ 88 (124)
T 1dc7_A 26 AGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIK---QRHPMLPVIIMTAHSDLD 88 (124)
T ss_dssp TTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHH---HHCTTSCCCCBCCSTTST
T ss_pred CCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHH---hhCCCCCEEEEecCCCHH
Confidence 34444 33344443 455799999999999999999999998 346778999999876544
No 99
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=98.96 E-value=1.2e-09 Score=59.46 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=50.7
Q ss_pred CchhHHHHHHHHhcCCCc-eeeecChhHHhhc-cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 2 TTTNGVLLSRLMSDGSDG-FDLSPTDTEEVHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
|+++.............+ +..+.++.+++.. ..||++|+|+.+|+++|+++++.++ ...+.+|+|++|+..+.+.
T Consensus 9 dd~~~~~~~l~~~L~~~~~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr---~~~~~~~ii~lt~~~~~~~ 85 (220)
T 1p2f_A 9 DDDKNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIK---ETRPETWVILLTLLSDDES 85 (220)
T ss_dssp CSCHHHHHHHHHHHTTTEEEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHH---HHCTTSEEEEEESCCSHHH
T ss_pred eCCHHHHHHHHHHHHhCCCEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH---hcCCCCcEEEEEcCCCHHH
Confidence 334444433333333333 3334445555543 4799999999999999999999999 3457899999998876543
No 100
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=98.95 E-value=5.5e-10 Score=57.18 Aligned_cols=68 Identities=25% Similarity=0.290 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHhcCCC-ceeee---cChhHH---hhcc-CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 2 TTTNGVLLSRLMSDGSD-GFDLS---PTDTEE---VHVL-AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~-~~~~~---~~~~~~---~~~~-~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|++.............. ++.++ .++.++ +... +||+||+|+.||+++|+++++.++ ...+ .|+++++.
T Consensus 20 dd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr---~~~~-~~iiil~~ 95 (145)
T 3kyj_B 20 DDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAK---LKTR-AKICMLSS 95 (145)
T ss_dssp CSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHH---HHCC-CEEC-CBS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHH---hcCC-CCeEEEEE
Confidence 34444444444444444 66643 334443 4455 799999999999999999999999 2233 78888886
No 101
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=98.94 E-value=2.5e-09 Score=54.46 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=36.8
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.+...+||++|+|+.+|+.+|+++++.++ ...+..|+|++|+..
T Consensus 50 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~~s~~~ 93 (143)
T 2qv0_A 50 FLQHNKVDAIFLDINIPSLDGVLLAQNIS---QFAHKPFIVFITAWK 93 (143)
T ss_dssp HHHHCCCSEEEECSSCSSSCHHHHHHHHT---TSTTCCEEEEEESCC
T ss_pred HHHhCCCCEEEEecCCCCCCHHHHHHHHH---ccCCCceEEEEeCCH
Confidence 34566899999999999999999999999 456677888888763
No 102
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=98.93 E-value=4.3e-10 Score=60.31 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=42.0
Q ss_pred Cceeeec--ChhHHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchhh
Q 039883 18 DGFDLSP--TDTEEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~--~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~~ 79 (82)
.+|.+.. ++.+++ ...||+||+|+.||+++|. +++.++ ...+.+|+|++|+..+.+.
T Consensus 35 ~g~~v~~~~~~~~al-~~~~dlvl~D~~mp~~~g~-l~~~~~---~~~~~~~ii~lt~~~~~~~ 93 (196)
T 1qo0_D 35 IGCSVRQCWPPPEAF-DVPVDVVFTSIFQNRHHDE-IAALLA---AGTPRTTLVALVEYESPAV 93 (196)
T ss_dssp HTCEEEEECSCCSSC-SSCCSEEEEECCSSTHHHH-HHHHHH---HSCTTCEEEEEECCCSHHH
T ss_pred cCCeEEEecCchhhC-CCCCCEEEEeCCCCccchH-HHHHHh---ccCCCCCEEEEEcCCChHH
Confidence 4555533 333444 4579999999999999998 888888 2237899999999877654
No 103
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=98.93 E-value=4e-09 Score=61.58 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHhcCC-Cceee---ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 2 TTTNGVLLSRLMSDGS-DGFDL---SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~-~~~~~---~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|++..........+.. .++++ ..++.++ +...+||++++|+.||+++|+++++.++ ...+ +|+|++|+.
T Consensus 10 DD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi~mp~~dGlell~~l~---~~~p-~pVIvlS~~ 85 (349)
T 1a2o_A 10 DDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLM---RLRP-MPVVMVSSL 85 (349)
T ss_dssp CSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHH---HSSC-CCEEEEECC
T ss_pred ECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHH---hcCC-CcEEEEECC
Confidence 4444444443333333 36663 3344443 4456899999999999999999999999 3344 899999987
Q ss_pred Cch
Q 039883 75 NIL 77 (82)
Q Consensus 75 ~~~ 77 (82)
.+.
T Consensus 86 ~~~ 88 (349)
T 1a2o_A 86 TGK 88 (349)
T ss_dssp THH
T ss_pred Ccc
Confidence 653
No 104
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=98.89 E-value=4.8e-10 Score=57.87 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=34.0
Q ss_pred eeeecChhH---Hhhc-cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 20 FDLSPTDTE---EVHV-LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 20 ~~~~~~~~~---~~~~-~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
+..+.+..+ .+.. .+||++|+|+.+++.+|+++++.++ ...+.+|+|++|+..+.+
T Consensus 32 v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~---~~~~~~~ii~ls~~~~~~ 91 (154)
T 2qsj_A 32 VEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLK---RFDPSNAVALISGETDHE 91 (154)
T ss_dssp EEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHH---HHCTTSEEEEC-----CH
T ss_pred EEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHH---HhCCCCeEEEEeCCCCHH
Confidence 344455554 3455 7899999999999999999999999 446789999999876543
No 105
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=98.88 E-value=3.3e-09 Score=53.64 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=39.7
Q ss_pred Cceee--ecChhHHhhcc--CccEEEEeCCCCCCCHHHHHHHHHhhcCC--CCCccEEEEeeCCchh
Q 039883 18 DGFDL--SPTDTEEVHVL--AVDLIITDYCMPGMTGCELIKKIKLQSFT--FREIPTVIISSENILA 78 (82)
Q Consensus 18 ~~~~~--~~~~~~~~~~~--~~d~vi~d~~~~~~~~~~~~~~l~~~~~~--~~~~~vi~ls~~~~~~ 78 (82)
.++++ +.++.+++... .+|++|+|+.||+++|+++++.+++.... ...+++|++|+..+..
T Consensus 30 ~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~ 96 (136)
T 1dcf_A 30 LGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKS 96 (136)
T ss_dssp TTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHH
T ss_pred cCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHH
Confidence 34444 44444554422 35999999999999999999999721111 1234578888776654
No 106
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.71 E-value=4.7e-09 Score=66.39 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=43.6
Q ss_pred CCceee--ecChhHH---hhcc-CccEEEEeCCCCC----CCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 17 SDGFDL--SPTDTEE---VHVL-AVDLIITDYCMPG----MTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 17 ~~~~~~--~~~~~~~---~~~~-~~d~vi~d~~~~~----~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..+|++ ..++.++ +... +||+||+|+.||+ ++|+++++.+| .....+||+++|+..+
T Consensus 30 ~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR---~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 30 QQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH---ERQQNVPVFLLGDREK 96 (755)
T ss_dssp HTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHH---HHSTTCCEEEEECHHH
T ss_pred hCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHH---HhCCCCCEEEEecCCc
Confidence 355555 4455544 3344 4999999999999 99999999999 4456799999998654
No 107
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=98.70 E-value=2.2e-08 Score=54.57 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHhcCCCceee--ecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 2 TTTNGVLLSRLMSDGSDGFDL--SPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 2 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
|+++.............++.+ +.++.++ +...+||++| ||+++|+++++.++ .....+|+|++|+..+
T Consensus 7 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi----lp~~~g~~~~~~lr---~~~~~~~ii~lt~~~~ 79 (223)
T 2hqr_A 7 EKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIK---EKHSSIVVLVSSDNPT 79 (223)
T ss_dssp CSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE----ECCTTHHHHHHHHH---HHCTTSEEEEEESSCC
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE----eCCCCHHHHHHHHH---hCCCCCcEEEEECCCC
Confidence 344444433333332344544 4444444 4455899999 89999999999999 3323899999998876
Q ss_pred hhh
Q 039883 77 LAR 79 (82)
Q Consensus 77 ~~~ 79 (82)
.+.
T Consensus 80 ~~~ 82 (223)
T 2hqr_A 80 SEE 82 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 108
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=98.63 E-value=4.1e-08 Score=49.62 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=39.1
Q ss_pred CceeeecChhHH---hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCC-CccEEEEeeCCchhh
Q 039883 18 DGFDLSPTDTEE---VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFR-EIPTVIISSENILAR 79 (82)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~-~~~vi~ls~~~~~~~ 79 (82)
..+..+.+..++ +....||++| +|+.+|+++++.++ .. + .+|+|++|+..+.+.
T Consensus 43 ~~v~~~~~~~~al~~l~~~~~dlvi----~~~~~g~~~~~~l~---~~-~~~~~ii~ls~~~~~~~ 100 (137)
T 2pln_A 43 FMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIK---EK-HSSIVVLVSSDNPTSEE 100 (137)
T ss_dssp CEEEEESCHHHHHHHHHHSCCSEEE----ECSTTHHHHHHHHH---HH-STTSEEEEEESSCCHHH
T ss_pred cEEEEeCCHHHHHHHHHcCCCCEEE----EcCccHHHHHHHHH---hc-CCCccEEEEeCCCCHHH
Confidence 333334444443 4456899999 89999999999999 33 6 899999998766543
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.48 E-value=3.3e-07 Score=50.09 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=33.4
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+.+...+||++|+|+.||+++|+++++.++ ...+..++++++...
T Consensus 19 ~~~~~~~~dlvl~D~~~p~~~g~~~~~~l~---~~~~~~~i~vi~~~~ 63 (237)
T 3cwo_X 19 EKYKELKPDIVTMDITMPEMNGIDAIKEIM---KIDPNAKIIVCSAMG 63 (237)
T ss_dssp HHHHHHCCSCEEEECCSTTSSHHHHHHHHH---HHSSSCCEEEECCSS
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHH---HhCCCCCEEEEECCC
Confidence 345566899999999999999999999998 233344555555443
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=97.78 E-value=5.4e-05 Score=45.27 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=38.3
Q ss_pred ccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 32 VLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
...||++++|..||+++|+++++.++ ........|++++|+..+..
T Consensus 192 ~~~~dlil~D~~mp~~dG~~~~~~ir-~~~~~~~~pii~lt~~~~~~ 237 (459)
T 1w25_A 192 GGPVDLVIVNAAAKNFDGLRFTAALR-SEERTRQLPVLAMVDPDDRG 237 (459)
T ss_dssp HSSCSEEEEETTCSSSCHHHHHHHHH-TSGGGTTCCEEEEECTTCHH
T ss_pred cCCCCEEEEecCCCCCcHHHHHHHHH-hCccccCCcEEEEcCCCchH
Confidence 34689999999999999999999999 44456788999999876643
No 111
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.88 E-value=0.0086 Score=38.38 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=41.4
Q ss_pred hcCCCceeeecChh--H---Hhhcc-CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 14 SDGSDGFDLSPTDT--E---EVHVL-AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--~---~~~~~-~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
.+...+|++..+.+ + .++.. ..++||+|+.++ +.++++.+| ..+..+||++++....
T Consensus 25 ~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir---~~~~~iPVFl~~~~~~ 87 (715)
T 3n75_A 25 ALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEIS---KMNENLPLYAFANTYS 87 (715)
T ss_dssp HHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHH---HHCTTCEEEEECCTTC
T ss_pred HHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHH---HhCCCCCEEEEecCCc
Confidence 33455777755533 3 33333 588999999986 688999999 5688999999987744
No 112
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.74 E-value=2.5 Score=22.96 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=27.4
Q ss_pred ccCccEEEEeCC-----CCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 32 VLAVDLIITDYC-----MPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 32 ~~~~d~vi~d~~-----~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..++|+||+|-. +.-.+.-+++..|. ......- +++|+...+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~-vIlTGr~ap 164 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQT-VIITGRGCH 164 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCE-EEEECSSCC
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCE-EEEECCCCc
Confidence 347999999974 34556778888888 4455554 455554443
No 113
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=84.66 E-value=1.1 Score=24.67 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||....... .+....|+ ...+|++++..
T Consensus 53 E~i~~l~PDlIi~~~~~~~---~~~~~~L~-----~~gipvv~~~~ 90 (255)
T 3md9_A 53 EGILAMKPTMLLVSELAQP---SLVLTQIA-----SSGVNVVTVPG 90 (255)
T ss_dssp HHHHTTCCSEEEEETTCSC---HHHHHHHH-----HTTCEEEEECC
T ss_pred HHHHccCCCEEEEcCCcCc---hhHHHHHH-----HcCCcEEEeCC
Confidence 7788889999998765432 34455665 22368888864
No 114
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=84.07 E-value=2.1 Score=22.44 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=25.7
Q ss_pred hhccCccEEEEeCCCCCC--CH-------HHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPGM--TG-------CELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~--~~-------~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+...+||+|++.+..-+. +. .++++.++ ...+.+++|+++.
T Consensus 70 ~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~---~~~p~~~ii~~~~ 119 (200)
T 4h08_A 70 LKNTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIR---KYAPKAKLIWANT 119 (200)
T ss_dssp HHHSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHH---HHCTTCEEEEECC
T ss_pred HhcCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHh---hhCCCccEEEecc
Confidence 345589999997666553 22 23445555 4567778887764
No 115
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=80.26 E-value=2.1 Score=23.57 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||...... ..+....|+ ...+|++++..
T Consensus 53 E~i~~l~PDLIi~~~~~~---~~~~~~~L~-----~~gipvv~~~~ 90 (256)
T 2r7a_A 53 EGILSLRPDSVITWQDAG---PQIVLDQLR-----AQKVNVVTLPR 90 (256)
T ss_dssp HHHHTTCCSEEEEETTCS---CHHHHHHHH-----HTTCEEEEECC
T ss_pred HHHHccCCCEEEEcCCCC---CHHHHHHHH-----HcCCcEEEecC
Confidence 778888999999865421 134556665 22367887753
No 116
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=79.87 E-value=1.6 Score=26.14 Aligned_cols=43 Identities=21% Similarity=0.114 Sum_probs=27.5
Q ss_pred HhhccCccEEEEeCCCCC----C---C----HHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDLIITDYCMPG----M---T----GCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~----~---~----~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+...+||+|++.+..-+ . . -..+++.++ ...+..+|++++..
T Consensus 239 ~l~~~~pdlVvI~lGtND~~~~~~~~~~~~~l~~li~~ir---~~~P~a~Illv~p~ 292 (385)
T 3skv_A 239 LIRDLPADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIR---ERHPLTPIVLGSSV 292 (385)
T ss_dssp HHHHSCCSEEEEEESHHHHTTTCCTTTHHHHHHHHHHHHH---TTCSSSCEEEEECC
T ss_pred HHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHH---HHCCCCcEEEEcCC
Confidence 344568999998553221 1 1 133667777 56788899998865
No 117
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=79.45 E-value=1.7 Score=24.42 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||...... ..+....|+ ...+|++++..
T Consensus 53 E~i~~l~PDLIi~~~~~~---~~~~~~~L~-----~~gipvv~~~~ 90 (283)
T 2r79_A 53 EGVLALRPDILIGTEEMG---PPPVLKQLE-----GAGVRVETLSA 90 (283)
T ss_dssp HHHHTTCCSEEEECTTCC---CHHHHHHHH-----HTTCCEEECCC
T ss_pred HHHHhcCCCEEEEeCccC---cHHHHHHHH-----HcCCcEEEecC
Confidence 677888999999865332 234556666 12367887753
No 118
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=78.27 E-value=7 Score=21.94 Aligned_cols=55 Identities=11% Similarity=-0.001 Sum_probs=34.4
Q ss_pred CCCceeeecCh-----h---HHhhccCccEEEEeCCCCCC-C-HHHHHHHHHhhcCCCCCccEEEEee
Q 039883 16 GSDGFDLSPTD-----T---EEVHVLAVDLIITDYCMPGM-T-GCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 16 ~~~~~~~~~~~-----~---~~~~~~~~d~vi~d~~~~~~-~-~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
...||++..-+ + +++...+||+|.+...+... . ..++++.++ .....+||++--.
T Consensus 148 ~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~---~~~~~~~v~vGG~ 212 (258)
T 2i2x_B 148 RANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLL---ENGIKIPFACGGG 212 (258)
T ss_dssp HHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHH---TTTCCCCEEEEST
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHH---hcCCCCcEEEECc
Confidence 34567664321 1 45667799999999877642 2 345777887 4455577666543
No 119
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=75.64 E-value=7.4 Score=20.92 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=32.9
Q ss_pred CCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 16 GSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 16 ~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
...||++..-+. +++...+||+|.+...+... ...++++.++ .....+.+|+++--.
T Consensus 113 ~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~-~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 113 ESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALI-AAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHH-HTTCGGGCEEEEEST
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHH-hcCCCCCCeEEEECC
Confidence 345676653221 45566799999999877642 2344566777 211224567666543
No 120
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=69.34 E-value=11 Score=20.16 Aligned_cols=40 Identities=3% Similarity=0.004 Sum_probs=24.8
Q ss_pred ccCccEEEEeCCCCCCC--H-------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGMT--G-------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~--~-------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+|++.+..-+.. . .++++.++ ...+..+|++++..
T Consensus 91 ~~~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~---~~~p~~~ii~~~~~ 139 (232)
T 1es9_A 91 HIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVN---ERQPQARVVVLGLL 139 (232)
T ss_dssp TCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHH---HHSTTCEEEEECCC
T ss_pred cCCCCEEEEEeecCCCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEecCC
Confidence 34799999977666543 1 22445555 33556778887654
No 121
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=67.88 E-value=15 Score=21.00 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=26.4
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
|.+...+||+||..... ..+....|+ ...+|++++...
T Consensus 78 E~i~~l~PDlIi~~~~~----~~~~~~~L~-----~~Gipvv~~~~~ 115 (326)
T 3psh_A 78 ESLLALKPDVVFVTNYA----PSEMIKQIS-----DVNIPVVAISLR 115 (326)
T ss_dssp HHHHHTCCSEEEEETTC----CHHHHHHHH-----TTTCCEEEECSC
T ss_pred HHHHccCCCEEEEeCCC----ChHHHHHHH-----HcCCCEEEEecc
Confidence 77888899999987432 134566666 335788888654
No 122
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=67.53 E-value=11 Score=19.53 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=32.6
Q ss_pred cCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 15 DGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 15 ~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
+...||++..-+. +++....||+|.+...+... ...++++.++ . .....++|++--
T Consensus 42 l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~-~-~g~~~i~v~vGG 107 (161)
T 2yxb_A 42 LRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLR-E-LGADDIPVVLGG 107 (161)
T ss_dssp HHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHH-H-TTCTTSCEEEEE
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHH-h-cCCCCCEEEEeC
Confidence 3346777765422 45566789999998877641 2244556666 2 112356665543
No 123
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=65.10 E-value=7.6 Score=21.17 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=22.0
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||..... .+ .+....|+ .-.+|++++.
T Consensus 51 E~i~~l~PDLIi~~~~~--~~-~~~~~~L~-----~~gipvv~~~ 87 (245)
T 1n2z_A 51 ERIVALKPDLVIAWRGG--NA-ERQVDQLA-----SLGIKVMWVD 87 (245)
T ss_dssp HHHHHTCCSEEEECTTT--SC-HHHHHHHH-----HHTCCEEECC
T ss_pred HHHhccCCCEEEEeCCC--Cc-HHHHHHHH-----HCCCcEEEeC
Confidence 67778899999984211 11 34455555 1135777664
No 124
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=64.67 E-value=17 Score=20.70 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=33.2
Q ss_pred cCCC-ceeeecChh--------HHhhccCccEEEEeCCCCCCC-----HHHHHHHHHhhcCCCCCccEEEE
Q 039883 15 DGSD-GFDLSPTDT--------EEVHVLAVDLIITDYCMPGMT-----GCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 15 ~~~~-~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~~-----~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+... +|++..-+. +++...+||+|.+...+...+ -.++++.++ .......+++++-
T Consensus 152 L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~-~~g~~~~i~vivG 221 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLE-AEGLRDRFVLLCG 221 (262)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHH-HTTCGGGSEEEEE
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHH-hcCCCCCCEEEEE
Confidence 4556 888865322 455667999999999887622 123556666 2112233555543
No 125
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=64.55 E-value=6.2 Score=21.56 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEE--eCCCCC-CC-HHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIIT--DYCMPG-MT-GCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~--d~~~~~-~~-~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.....||++..-+. +++...+||+|.+ ...+.. .. -.++++.++ .......+|+++--...
T Consensus 115 ~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~-~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 115 MLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN-EEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH-HTTCGGGSEEEEESSSC
T ss_pred HHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH-HcCCCCCCEEEEECCCC
Confidence 33456777754322 5566778999999 877753 22 344667777 21112367766654433
No 126
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=63.38 E-value=12 Score=21.62 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||.... ..+....|+ ...+|++++..
T Consensus 110 E~i~al~PDLIi~~~~-----~~~~~~~L~-----~~gipvv~~~~ 145 (335)
T 4hn9_A 110 EACVAATPDVVFLPMK-----LKKTADTLE-----SLGIKAVVVNP 145 (335)
T ss_dssp HHHHHTCCSEEEEEGG-----GHHHHHHHH-----HTTCCEEEECC
T ss_pred HHHHhcCCCEEEEeCc-----chhHHHHHH-----HcCCCEEEEcC
Confidence 6788889999998653 234566666 22468888753
No 127
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=62.10 E-value=16 Score=19.54 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=25.1
Q ss_pred hhccCc-cEEEEeCCCCCCC------HH-------HHHHHHHhhcCCC-----CCccEEEEeeCC
Q 039883 30 VHVLAV-DLIITDYCMPGMT------GC-------ELIKKIKLQSFTF-----REIPTVIISSEN 75 (82)
Q Consensus 30 ~~~~~~-d~vi~d~~~~~~~------~~-------~~~~~l~~~~~~~-----~~~~vi~ls~~~ 75 (82)
+...+| |+|++-+..-|.. .. ++++.++ ... +..+|++++.+.
T Consensus 96 l~~~~p~d~VvI~~GtND~~~~~~~~~~~~~~~l~~li~~ir---~~~~~~~~p~~~iil~~p~~ 157 (232)
T 3dci_A 96 LSCHMPLDLVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVE---TFIYKPREAVPKLLIVAPPP 157 (232)
T ss_dssp HHHHCSCSEEEEECCTTTTSGGGTSSHHHHHHHHHHHHHHHH---HCCCSSTTCCCEEEEEECCC
T ss_pred HhhCCCCCEEEEEeccCCCccccCCCHHHHHHHHHHHHHHHH---HhcccccCCCCeEEEEeCCC
Confidence 344567 9999966554432 22 2344555 223 678888887654
No 128
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=59.28 E-value=23 Score=20.30 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=32.1
Q ss_pred hccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 31 HVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
....||++|+=.=.+...|-.-.+.+- .....|.|+++...
T Consensus 61 ~~~~pDfvI~isPN~a~PGP~~ARE~l----~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 61 EDFEPDFIVYGGPNPAAPGPSKAREML----ADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHCCSEEEEECSCTTSHHHHHHHHHH----HTSSSCEEEEEEGG
T ss_pred hhcCCCEEEEECCCCCCCCchHHHHHH----HhCCCCEEEEcCCc
Confidence 455899999888888888888777765 36678999998754
No 129
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=58.83 E-value=22 Score=22.77 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=34.7
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.+...||++..-+. +++....||+|.+...+... ...++++.++ .....+||++--.
T Consensus 121 ~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr---~~g~~i~ViVGGa 187 (579)
T 3bul_A 121 VLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEME---RQGFTIPLLIGGA 187 (579)
T ss_dssp HHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHH---HTTCCSCEEEEST
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHH---HcCCCCeEEEEcc
Confidence 44467777754322 45666789999999977531 1223566666 3445677766543
No 130
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=58.52 E-value=33 Score=22.75 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=34.8
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCC----CH-HHHHHHHHhhcCCCCCccEEEE
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM----TG-CELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~----~~-~~~~~~l~~~~~~~~~~~vi~l 71 (82)
.+...||++..-+. +++....||+|.+...+... .. -++++.++ .......++|++-
T Consensus 629 ~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLr-E~GlrDkIkVIVG 698 (763)
T 3kp1_A 629 GIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAV-EKGIRDKIMIGCG 698 (763)
T ss_dssp CGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHH-HTTCTTTSEEEEE
T ss_pred HHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHH-hcCCCCCCEEEEE
Confidence 35567888865432 45667789999999988862 22 33566676 2222223555553
No 131
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=58.17 E-value=17 Score=21.38 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=11.4
Q ss_pred HhhccCccEEEEeCC
Q 039883 29 EVHVLAVDLIITDYC 43 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~ 43 (82)
.++..+||+|+.|..
T Consensus 99 ~l~~~~pD~Vi~d~~ 113 (430)
T 2iyf_A 99 AYADDIPDLVLHDIT 113 (430)
T ss_dssp HHTTSCCSEEEEETT
T ss_pred HhhccCCCEEEECCc
Confidence 345568999999965
No 132
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=57.93 E-value=16 Score=19.15 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=22.6
Q ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++=+++=+..++. +..+.++..+ ....++|.+|+..+..
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak-----~~g~~vI~IT~~~~s~ 153 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAH-----DREMLVVALTGRDGGG 153 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHH-----HTTCEEEEEECTTCHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH-----HCCCEEEEEECCCCCc
Confidence 34433333344443 3455666666 4567899999876543
No 133
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=57.57 E-value=24 Score=20.78 Aligned_cols=34 Identities=29% Similarity=0.163 Sum_probs=20.9
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
.++..+||+||.|.... -+..+.+.+. +|.+.+.
T Consensus 104 ~l~~~~pD~VI~d~~~~--~~~~~A~~lg--------IP~v~~~ 137 (424)
T 2iya_A 104 AYADDRPDLIVYDIASW--PAPVLGRKWD--------IPFVQLS 137 (424)
T ss_dssp HTTTSCCSEEEEETTCT--HHHHHHHHHT--------CCEEEEE
T ss_pred HHhccCCCEEEEcCccc--HHHHHHHhcC--------CCEEEEe
Confidence 34456899999998643 2444454444 5566554
No 134
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=57.50 E-value=18 Score=18.62 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..+.++..+ ....++|.+|+..+.
T Consensus 112 ~~~~~~~ak-----~~g~~vi~IT~~~~s 135 (183)
T 2xhz_A 112 ITALIPVLK-----RLHVPLICITGRPES 135 (183)
T ss_dssp HHHHHHHHH-----TTTCCEEEEESCTTS
T ss_pred HHHHHHHHH-----HCCCCEEEEECCCCC
Confidence 345555555 446789999986554
No 135
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=57.12 E-value=22 Score=20.56 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=24.2
Q ss_pred ccCccEEEE-----eCCCCCCCH-------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIIT-----DYCMPGMTG-------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~-----d~~~~~~~~-------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+|++ |+....... ..+++.++ ...+..+|++++.+
T Consensus 211 ~~~PdlVvI~lGtND~~~~~~~~~~~~~~l~~li~~ir---~~~p~a~Iil~~pp 262 (341)
T 2wao_A 211 KYVPQVVVINLGTNDFSTSFADKTKFVTAYKNLISEVR---RNYPDAHIFCCVGP 262 (341)
T ss_dssp GCCCSEEEEECCHHHHSSSCCCHHHHHHHHHHHHHHHH---HHCTTCEEEEEECS
T ss_pred CCCCCEEEEeCccccCCCCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEEeCC
Confidence 457999998 544432221 22455666 44667888888753
No 136
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=56.77 E-value=16 Score=18.87 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=23.3
Q ss_pred ccCccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 32 VLAVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
...++=+++=+..++.+ ..+.++..+ ....++|.+|+..+.
T Consensus 84 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak-----~~g~~vi~IT~~~~s 126 (187)
T 3sho_A 84 NLRPTDLMIGVSVWRYLRDTVAALAGAA-----ERGVPTMALTDSSVS 126 (187)
T ss_dssp TCCTTEEEEEECCSSCCHHHHHHHHHHH-----HTTCCEEEEESCTTS
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHH-----HCCCCEEEEeCCCCC
Confidence 33444444445555544 344555555 446889999986554
No 137
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=55.71 E-value=4.9 Score=21.50 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 51 ELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 51 ~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++++.++ ...+..+|++++...
T Consensus 118 ~li~~l~---~~~P~~~iil~~p~~ 139 (232)
T 3dc7_A 118 MLLTGLQ---TNWPTVPKLFISAIH 139 (232)
T ss_dssp HHHHHHH---HHCTTSCEEEEECCC
T ss_pred HHHHHHH---HhCCCCeEEEEeCcc
Confidence 4677777 456778899888654
No 138
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=55.69 E-value=18 Score=23.12 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=30.2
Q ss_pred HHhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
+++.....|++++|...... .-++.+++++ ...+.++||+-.
T Consensus 287 ~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik---~~~p~~~viaGN 329 (556)
T 4af0_A 287 KLLAEAGLDVVVLDSSQGNSVYQIEFIKWIK---QTYPKIDVIAGN 329 (556)
T ss_dssp HHHHHTTCCEEEECCSCCCSHHHHHHHHHHH---HHCTTSEEEEEE
T ss_pred HHHHhcCCcEEEEeccccccHHHHHHHHHHH---hhCCcceEEecc
Confidence 34445579999999987654 3477888888 556788877654
No 139
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=54.77 E-value=11 Score=18.88 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=32.0
Q ss_pred hcCCCceeeecChh--------HHhhccCccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEE
Q 039883 14 SDGSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 14 ~~~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
.....||++..-+. +++....||+|.+...+.... ..++++.++ .. ..+.+++++-
T Consensus 26 ~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~-~~-g~~~i~v~vG 91 (137)
T 1ccw_A 26 AFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCD-EA-GLEGILLYVG 91 (137)
T ss_dssp HHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHH-HT-TCTTCEEEEE
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHH-hc-CCCCCEEEEE
Confidence 33456777764322 455667899999998885421 233566676 21 2224555443
No 140
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=54.55 E-value=18 Score=22.03 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=21.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+||+||.|..++ -+..+.+.+. +|.+.+...
T Consensus 117 ~~~d~vI~D~~~~--~~~~vA~~lg--------iP~v~~~~~ 148 (482)
T 2pq6_A 117 PPVTCLVSDCCMS--FTIQAAEEFE--------LPNVLYFSS 148 (482)
T ss_dssp CCCCEEEEETTCT--HHHHHHHHTT--------CCEEEEECS
T ss_pred CCceEEEECCcch--hHHHHHHHcC--------CCEEEEecc
Confidence 4799999999876 3555555443 566766543
No 141
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=54.40 E-value=23 Score=20.57 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||.... +.....+.++ ...+|++++..
T Consensus 90 E~Ilal~PDLIi~~~~----~~~~~~~~~~-----~~GiPvv~~~~ 126 (346)
T 2etv_A 90 ESLITLQPDVVFITYV----DRXTAXDIQE-----XTGIPVVVLSY 126 (346)
T ss_dssp HHHHHHCCSEEEEESC----CHHHHHHHHH-----HHTSCEEEECC
T ss_pred HHHhcCCCCEEEEeCC----ccchHHHHHH-----hcCCcEEEEec
Confidence 6788889999998653 2333333334 11378888854
No 142
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=54.33 E-value=21 Score=18.64 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=22.7
Q ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 34 AVDLIITDYCMPGM--TGCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 34 ~~d~vi~d~~~~~~--~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
.++=+++=+..++. +..+.++..+ ....++|.+|+..+..
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak-----~~g~~vI~IT~~~~s~ 149 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAV-----TRDMTIVALTGYDGGE 149 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHH-----HTTCEEEEEECTTCHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH-----HCCCEEEEEeCCCCch
Confidence 44433333444443 3455566666 4467899999876543
No 143
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=54.01 E-value=22 Score=18.51 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=24.5
Q ss_pred hhccCc-cEEEEeCCCCCC------CH-------HHHHHHHHhhcCCC-------CCccEEEEeeC
Q 039883 30 VHVLAV-DLIITDYCMPGM------TG-------CELIKKIKLQSFTF-------REIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~-d~vi~d~~~~~~------~~-------~~~~~~l~~~~~~~-------~~~~vi~ls~~ 74 (82)
+...+| |+|++-+..-+. +. .++++.++ ... +..+|++++.+
T Consensus 78 l~~~~p~d~vvi~~G~ND~~~~~~~~~~~~~~~l~~li~~~~---~~~~~~~~~~P~~~iil~~~p 140 (216)
T 2q0q_A 78 LATHLPLDLVIIMLGTNDTKAYFRRTPLDIALGMSVLVTQVL---TSAGGVGTTYPAPKVLVVSPP 140 (216)
T ss_dssp HHHHCSCSEEEEECCTGGGSGGGCCCHHHHHHHHHHHHHHHH---TCTTTTTBCCCCCEEEEEECC
T ss_pred HHhCCCCCEEEEEecCcccchhcCCCHHHHHHHHHHHHHHHH---HhcccccccCCCCeEEEEeCC
Confidence 334466 999986654432 22 22445555 444 66788888754
No 144
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=53.78 E-value=20 Score=18.53 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=21.6
Q ss_pred CccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 34 AVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.++=+++=+..++.+ ..+.++..+ ....++|.+|+..+.
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak-----~~g~~vi~iT~~~~s 149 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAK-----ELNMLCLGLSGKGGG 149 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHH-----HTTCEEEEEEEGGGT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH-----HCCCEEEEEeCCCCc
Confidence 344333333444433 355566555 346789999986554
No 145
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=53.16 E-value=20 Score=18.54 Aligned_cols=38 Identities=11% Similarity=-0.180 Sum_probs=20.8
Q ss_pred ccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 35 VDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 35 ~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
++-+++=+..++.+ ..+.++.++ ....++|.+|+..+.
T Consensus 79 ~~d~vI~iS~sG~t~~~~~~~~~ak-----~~g~~vi~IT~~~~s 118 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIHTAAKAK-----SLHGIVAALTINPES 118 (186)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHH-----HTTCEEEEEESCTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH-----HCCCEEEEEECCCCC
Confidence 33333334444443 344555555 446789999986543
No 146
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=52.81 E-value=36 Score=20.65 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=23.5
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+||+||.|..++- +..+.+++. +|.+.+...
T Consensus 111 ~~~d~vI~D~~~~~--~~~vA~~lg--------iP~v~~~~~ 142 (456)
T 2c1x_A 111 RPVSCLVADAFIWF--AADMAAEMG--------VAWLPFWTA 142 (456)
T ss_dssp CCCCEEEEETTSTT--HHHHHHHHT--------CEEEEEECS
T ss_pred CCceEEEECCchHh--HHHHHHHhC--------CCEEEEeCc
Confidence 47999999999863 677777665 566666543
No 147
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=51.74 E-value=32 Score=19.66 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||......+. ..+....|+ .. . |++++..
T Consensus 109 E~I~~l~PDLIi~~~~~~~~-~~~~~~~L~---~~--g-pvv~~~~ 147 (326)
T 3tlk_A 109 EAVAAQMPDLILISATGGDS-ALALYDQLS---TI--A-PTLIINY 147 (326)
T ss_dssp HHHHTTCCSEEEEESSSTTC-CGGGHHHHH---TT--S-CEEEECC
T ss_pred HHHhhCCCCEEEEeCCCccc-hHHHHHHHH---hh--C-CEEEEcC
Confidence 77888899999987654331 134566666 22 3 7777754
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=51.22 E-value=34 Score=19.85 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=22.3
Q ss_pred cc--EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 35 VD--LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 35 ~d--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.| ++++|...|..+...+-+.|. ........|+|+++-
T Consensus 87 vD~v~~V~~~~~p~~~~~~i~r~L~-~~~~~~~~~vivlnK 126 (307)
T 1t9h_A 87 VDQAVLVFSAVQPSFSTALLDRFLV-LVEANDIQPIICITK 126 (307)
T ss_dssp CCEEEEEEESTTTTCCHHHHHHHHH-HHHTTTCEEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHH-HHHHCCCCEEEEEEC
Confidence 55 566899999988764444444 111233445666653
No 149
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=51.14 E-value=15 Score=19.52 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..+.++..+ ....++|.+|+..+.
T Consensus 105 ~i~~~~~ak-----~~g~~vI~IT~~~~s 128 (200)
T 1vim_A 105 VVNISKKAK-----DIGSKLVAVTGKRDS 128 (200)
T ss_dssp HHHHHHHHH-----HHTCEEEEEESCTTS
T ss_pred HHHHHHHHH-----HCCCeEEEEECCCCC
Confidence 455566666 345789999987544
No 150
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=49.65 E-value=17 Score=19.88 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||..... ..+....++ . -.+|++++..
T Consensus 54 E~i~~l~PDLIi~~~~~----~~~~~~~L~-~----~gipvv~~~~ 90 (260)
T 2q8p_A 54 EAVKKLKPTHVLSVSTI----KDEMQPFYK-Q----LNMKGYFYDF 90 (260)
T ss_dssp HHHHHTCCSEEEEEGGG----HHHHHHHHH-H----HTSCCEEECC
T ss_pred HHHHhcCCCEEEecCcc----CHHHHHHHH-H----cCCcEEEecC
Confidence 67788899999986432 234555665 1 1257777653
No 151
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=49.36 E-value=25 Score=18.31 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=21.4
Q ss_pred CccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 34 AVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.++=+++=+..++.+ ..+.++..+ ....++|.+|+..+.
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~~~~ak-----~~g~~vI~IT~~~~s 155 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAAFREAK-----AKGMTCVGFTGNRGG 155 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHH-----HTTCEEEEEECSCCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH-----HCCCeEEEEECCCCC
Confidence 343333334444433 345555555 346789999986543
No 152
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=48.64 E-value=18 Score=19.03 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=10.5
Q ss_pred CccEEEEeCCCCCC
Q 039883 34 AVDLIITDYCMPGM 47 (82)
Q Consensus 34 ~~d~vi~d~~~~~~ 47 (82)
.|+++++|.-....
T Consensus 105 ~~~lliiD~~~~~l 118 (220)
T 2cvh_A 105 NFALVVVDSITAHY 118 (220)
T ss_dssp TEEEEEEECCCCCT
T ss_pred CCCEEEEcCcHHHh
Confidence 59999999855443
No 153
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=47.91 E-value=24 Score=18.87 Aligned_cols=39 Identities=5% Similarity=0.053 Sum_probs=21.1
Q ss_pred ccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
++=+++=+..++.+ ..+.++..+ ....++|.+|+..+..
T Consensus 131 ~~DvvI~iS~SG~t~~~i~~~~~ak-----~~G~~vIaIT~~~~s~ 171 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIKAIAAAR-----EKGMKVITLTGKDGGK 171 (212)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHH-----HHTCEEEEEEETTCGG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-----HCCCeEEEEECCCCCc
Confidence 33333333444433 355555555 3467899999865543
No 154
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=47.63 E-value=28 Score=17.86 Aligned_cols=24 Identities=21% Similarity=-0.057 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..+.++..+ ....++|.+|+..+.
T Consensus 98 ~~~~~~~ak-----~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 98 VLTVAKKAK-----NINNNIIAIVCECGN 121 (180)
T ss_dssp HHHHHHHHH-----TTCSCEEEEESSCCG
T ss_pred HHHHHHHHH-----HCCCcEEEEeCCCCh
Confidence 445555555 456789999987554
No 155
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*
Probab=46.74 E-value=37 Score=18.96 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=22.7
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||....... +....|+ .. .|++++..
T Consensus 79 E~i~~l~PDLIi~~~~~~~----~~~~~L~---~~---~p~v~~~~ 114 (296)
T 3lhs_A 79 EEISKLKPDLIIADSSRHK----GINKELN---KI---APTLSLKS 114 (296)
T ss_dssp HHHHHTCCSEEEEETTTTT----TTHHHHH---HH---SCEEEECS
T ss_pred HHHHhCCCCEEEECCccCH----HHHHHHH---hh---CCEEEecC
Confidence 7788889999999765332 2344454 11 37777754
No 156
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=46.38 E-value=33 Score=18.30 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=21.8
Q ss_pred ccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 35 VDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 35 ~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
=|++|. +..++.+ ..+.++..+ ....++|.+|+..+..
T Consensus 115 ~Dvvi~-iS~SG~t~~~~~~~~~ak-----~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 115 DDILLV-ITTSGDSENILSAVEEAH-----DLEMKVIALTGGSGGA 154 (201)
T ss_dssp TCEEEE-ECSSSCCHHHHHHHHHHH-----HTTCEEEEEEETTCCG
T ss_pred CCEEEE-EeCCCCCHHHHHHHHHHH-----HCCCcEEEEECCCCCH
Confidence 444433 3444433 345555555 4468999999876543
No 157
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=45.64 E-value=34 Score=21.40 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=27.8
Q ss_pred HhhccCccEEEEeCCCCCCCH-HHHHHHHHhhcCCCCCccEEEE
Q 039883 29 EVHVLAVDLIITDYCMPGMTG-CELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~-~~~~~~l~~~~~~~~~~~vi~l 71 (82)
++....+|++.+|...+...+ .+++++++ ...+..|+++-
T Consensus 263 aLveaGvd~I~Id~a~g~~~~v~~~i~~i~---~~~~~~~vi~g 303 (511)
T 3usb_A 263 ALVKASVDAIVLDTAHGHSQGVIDKVKEVR---AKYPSLNIIAG 303 (511)
T ss_dssp HHHHTTCSEEEEECSCTTSHHHHHHHHHHH---HHCTTSEEEEE
T ss_pred HHHhhccceEEecccccchhhhhhHHHHHH---HhCCCceEEee
Confidence 344557999999988775544 46788888 44556777763
No 158
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=45.46 E-value=30 Score=18.69 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=21.9
Q ss_pred CccEEEEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 34 AVDLIITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
.++=+++=+..++.+ ..+.++.++ ......++|.+|+..+.
T Consensus 105 ~~~DlvI~iS~SG~t~~~i~~~~~ak---~~~~Ga~vI~IT~~~~s 147 (220)
T 3etn_A 105 QENDLLLLISNSGKTREIVELTQLAH---NLNPGLKFIVITGNPDS 147 (220)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHH---HHCTTCEEEEEESCTTS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH---hcCCCCeEEEEECCCCC
Confidence 344333334444443 344555555 21157899999986554
No 159
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=45.03 E-value=39 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=10.8
Q ss_pred HhhccCccEEEEeC
Q 039883 29 EVHVLAVDLIITDY 42 (82)
Q Consensus 29 ~~~~~~~d~vi~d~ 42 (82)
.++..+||+|+.|.
T Consensus 118 ~~~~~~pDlVv~d~ 131 (398)
T 4fzr_A 118 LAERWKPDLVLTET 131 (398)
T ss_dssp HHHHHCCSEEEEET
T ss_pred HHHhCCCCEEEECc
Confidence 35566899999885
No 160
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=44.88 E-value=24 Score=20.31 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=11.2
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
+.++..+||+|+.|.
T Consensus 96 ~~l~~~~pD~Vi~d~ 110 (402)
T 3ia7_A 96 EALGDNPPDLVVYDV 110 (402)
T ss_dssp HHHTTCCCSEEEEES
T ss_pred HHHhccCCCEEEECc
Confidence 345566899999984
No 161
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=44.58 E-value=28 Score=18.42 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=22.7
Q ss_pred ccEEEEeCCCCC-CCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 35 VDLIITDYCMPG-MTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 35 ~d~vi~d~~~~~-~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
-|++|+=.+... ....++...++ ....++|++|+
T Consensus 78 ~D~vii~S~Sg~n~~~ie~A~~ak-----e~G~~vIaITs 112 (170)
T 3jx9_A 78 VDRVLIFTPDTERSDLLASLARYD-----AWHTPYSIITL 112 (170)
T ss_dssp TCEEEEEESCSCCHHHHHHHHHHH-----HHTCCEEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH-----HCCCcEEEEeC
Confidence 566555444433 23678888888 45678999998
No 162
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=44.14 E-value=41 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=11.4
Q ss_pred HhhccCccEEEEeCC
Q 039883 29 EVHVLAVDLIITDYC 43 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~ 43 (82)
.++..+||+|+.|..
T Consensus 102 ~l~~~~pD~Vi~~~~ 116 (384)
T 2p6p_A 102 FSRAWRPDLIVGGTM 116 (384)
T ss_dssp HHHHHCCSEEEEETT
T ss_pred HHhccCCcEEEECcc
Confidence 345568999999964
No 163
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=43.48 E-value=43 Score=18.87 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||......+.. .+....|+ .. . |++++..
T Consensus 80 E~I~al~PDLIi~~~~~~~~~-~~~~~~L~---~~--~-Pvv~~~~ 118 (305)
T 3r5t_A 80 ESVYVEQPDLIVVSMIGADSA-RDQIPLLQ---AI--A-PTILVDY 118 (305)
T ss_dssp HHHHHHCCSEEEEESSSTTCC-GGGHHHHH---TT--S-CEEEECC
T ss_pred HHHHhcCCCEEEEeccccccc-HHHHHHHH---Hh--C-CEEEEcC
Confidence 778888999999977643211 23456666 22 2 7777754
No 164
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=42.24 E-value=52 Score=19.44 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=23.2
Q ss_pred hccCccEEEEeCCCCCC---C--H----HHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 31 HVLAVDLIITDYCMPGM---T--G----CELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~~~---~--~----~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
...+||+||+-=.+-+. + . .++++.++ ....|++++.++.+.
T Consensus 57 ~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-----~~~~pv~~v~GNHD~ 107 (386)
T 3av0_A 57 LEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-----ENNIKVYIVAGNHEM 107 (386)
T ss_dssp HTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH-----HTTCEEEECCCGGGS
T ss_pred HHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-----hcCCcEEEEcCCCCC
Confidence 34579999984333221 1 2 23333343 124688888887664
No 165
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=42.02 E-value=24 Score=20.41 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=11.2
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
+.++..+||+|+.|.
T Consensus 108 ~~l~~~~PD~Vv~~~ 122 (391)
T 3tsa_A 108 RLAEAWRPSVLLVDV 122 (391)
T ss_dssp HHHHHHCCSEEEEET
T ss_pred HHHHhcCCCEEEeCc
Confidence 345566899999984
No 166
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=41.75 E-value=40 Score=17.94 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=23.3
Q ss_pred ccCccEEEEeCCCCCC--CHH-------HHHHHHHhhcCCCCCccEEEEee
Q 039883 32 VLAVDLIITDYCMPGM--TGC-------ELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~--~~~-------~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
..+||+|++-+..-+. +.. ++++.++ ...+..+|++++.
T Consensus 92 ~~~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~---~~~p~~~iil~~~ 139 (229)
T 1fxw_F 92 NIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLIN---TRQPQAKIIVLGL 139 (229)
T ss_dssp SCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHH---HHCTTCEEEEECC
T ss_pred cCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHH---HHCCCCeEEEEeC
Confidence 3479999987766554 222 2344555 3355677887764
No 167
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=41.42 E-value=44 Score=19.87 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=20.2
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
.++..+||+|+.|... ..+.-..+.++ +|++.+.
T Consensus 139 ~~~~~~pDlVv~d~~~--~~~~~aA~~lg--------iP~v~~~ 172 (441)
T 2yjn_A 139 FCRKWRPDLVIWEPLT--FAAPIAAAVTG--------TPHARLL 172 (441)
T ss_dssp HHHHHCCSEEEECTTC--THHHHHHHHHT--------CCEEEEC
T ss_pred HHHhcCCCEEEecCcc--hhHHHHHHHcC--------CCEEEEe
Confidence 3455689999999743 22333333333 5666664
No 168
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=41.32 E-value=44 Score=20.79 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=27.4
Q ss_pred hhccCccEEEEeCCCCCCC-HHHHHHHHHhhcCCCCCccEEEE
Q 039883 30 VHVLAVDLIITDYCMPGMT-GCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~-~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+....+|+|.+|...+... ..+.+++++ ...+..|+++-
T Consensus 239 l~~aG~d~I~id~a~g~~~~~~~~i~~ir---~~~p~~~Vi~g 278 (496)
T 4fxs_A 239 LVEAGVDVLLIDSSHGHSEGVLQRIRETR---AAYPHLEIIGG 278 (496)
T ss_dssp HHHTTCSEEEEECSCTTSHHHHHHHHHHH---HHCTTCCEEEE
T ss_pred HHhccCceEEeccccccchHHHHHHHHHH---HHCCCceEEEc
Confidence 3344799999999887543 356788888 44557788773
No 169
>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}
Probab=39.76 E-value=15 Score=20.51 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.8
Q ss_pred HHhhccCccEEEEeCCCC
Q 039883 28 EEVHVLAVDLIITDYCMP 45 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~ 45 (82)
|.+...+||+||......
T Consensus 86 E~i~~l~PDLIi~~~~~~ 103 (308)
T 4h59_A 86 EAISNSKPDVILAGYSGI 103 (308)
T ss_dssp HHHHHTCCSEEEESSCCC
T ss_pred HHHHhcCCCEEEecCccc
Confidence 678888999999865443
No 170
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=39.71 E-value=23 Score=20.70 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=11.1
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
+.++..+||+|+.|.
T Consensus 112 ~~l~~~~PDlVi~d~ 126 (415)
T 3rsc_A 112 EALDGDVPDLVLYDD 126 (415)
T ss_dssp HHHSSSCCSEEEEES
T ss_pred HHHhccCCCEEEECc
Confidence 345566899999884
No 171
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=35.30 E-value=50 Score=19.13 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=10.8
Q ss_pred HhhccCccEEEEeC
Q 039883 29 EVHVLAVDLIITDY 42 (82)
Q Consensus 29 ~~~~~~~d~vi~d~ 42 (82)
.++..+||+|+.+.
T Consensus 125 ~l~~~~pDvVv~~~ 138 (412)
T 3otg_A 125 VIERLRPDLVVQEI 138 (412)
T ss_dssp HHHHHCCSEEEEET
T ss_pred HHHhcCCCEEEECc
Confidence 45566899999984
No 172
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=34.87 E-value=41 Score=16.12 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=23.9
Q ss_pred hhccCccEEEEeCCCCCCCHH--HHHHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMPGMTGC--ELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~--~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+...+|+|++..+ .+.-.. .....+- .....||+++...
T Consensus 98 a~~~~~dliV~G~~-~~~~~~lgs~~~~vl----~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 98 IEQYDVDLLVTGHH-QDFWSKLMSSTRQVM----NTIKIDMLVVPLR 139 (141)
T ss_dssp HHHTTCCEEEEEEC-CCCHHHHHHHHHHHH----TTCCSEEEEEECC
T ss_pred HHhcCCCEEEEeCC-CchhhhhcchHHHHH----hcCCCCEEEeeCC
Confidence 34557999999988 543211 1223332 3456899888654
No 173
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=34.71 E-value=15 Score=19.35 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=23.7
Q ss_pred ccCccEEEEeCCCCCC---------CHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGM---------TGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~---------~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+|++.+..-+. +-..+++.++ ...+..+|++++..
T Consensus 81 ~~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~---~~~p~~~ii~~~~~ 129 (215)
T 2vpt_A 81 THNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIF---TVKPNVTLFVADYY 129 (215)
T ss_dssp HHCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHH---HHCTTCEEEEECCC
T ss_pred ccCCCEEEEEccccccCCCCChhHHHHHHHHHHHH---HhCCCCEEEEEeCC
Confidence 4589999986633221 1123566666 34567778777643
No 174
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=33.84 E-value=26 Score=20.46 Aligned_cols=18 Identities=6% Similarity=-0.197 Sum_probs=13.2
Q ss_pred HhhccCccEEEEeCCCCC
Q 039883 29 EVHVLAVDLIITDYCMPG 46 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~ 46 (82)
.++..+||+|+.+.....
T Consensus 87 ~l~~~~PDvVi~~g~~~s 104 (365)
T 3s2u_A 87 VIRQLRPVCVLGLGGYVT 104 (365)
T ss_dssp HHHHHCCSEEEECSSSTH
T ss_pred HHHhcCCCEEEEcCCcch
Confidence 456678999998865543
No 175
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=33.42 E-value=61 Score=18.21 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=27.4
Q ss_pred hhccCccEEEEeCCCC--CCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMP--GMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~--~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.....|.|++..... ..+..++++++| . ..+|++++++.
T Consensus 32 ~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik---~--~~~Piil~p~~ 73 (235)
T 3w01_A 32 ICMSQTDAIMIGGTDDVTEDNVIHLMSKIR---R--YPLPLVLEISN 73 (235)
T ss_dssp HHTSSCSEEEECCSSCCCHHHHHHHHHHHT---T--SCSCEEEECCC
T ss_pred HHHcCCCEEEECCcCCcCHHHHHHHHHHhc---C--cCCCEEEecCC
Confidence 3445689999987543 223566677777 3 68899998875
No 176
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=33.28 E-value=44 Score=20.43 Aligned_cols=30 Identities=10% Similarity=0.270 Sum_probs=20.3
Q ss_pred Cc-cEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AV-DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~-d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
++ |+||.|..++. +..+.+++. +|.+.+..
T Consensus 109 ~~pd~vI~D~~~~~--~~~vA~~lg--------iP~v~~~~ 139 (480)
T 2vch_A 109 RLPTALVVDLFGTD--AFDVAVEFH--------VPPYIFYP 139 (480)
T ss_dssp CCCSEEEECTTCGG--GHHHHHHTT--------CCEEEEEC
T ss_pred CCCeEEEECCcchh--HHHHHHHcC--------CCEEEEEC
Confidence 67 99999998775 455555444 56666654
No 177
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=33.13 E-value=55 Score=19.02 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=10.7
Q ss_pred HHhhccCccEEEEe
Q 039883 28 EEVHVLAVDLIITD 41 (82)
Q Consensus 28 ~~~~~~~~d~vi~d 41 (82)
+.++..+||+|+.|
T Consensus 124 ~~l~~~~pDlVv~d 137 (398)
T 3oti_A 124 ALVDDYRPDLVVYE 137 (398)
T ss_dssp HHHHHHCCSEEEEE
T ss_pred HHHHHcCCCEEEEC
Confidence 34556689999998
No 178
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=33.02 E-value=23 Score=18.64 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=18.0
Q ss_pred CCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 42 YCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 42 ~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+..++.+ ..+.++..+ ....++|.+|+..+.
T Consensus 99 iS~sG~t~~~~~~~~~ak-----~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 99 ISKGGNTGELLNLIPACK-----TKGSTLIGVTENPDS 131 (201)
T ss_dssp ECSSSCCHHHHTTHHHHH-----HHTCEEEEEESCTTS
T ss_pred EeCCCCCHHHHHHHHHHH-----HcCCeEEEEECCCCC
Confidence 4444433 334455555 335789999986554
No 179
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=32.34 E-value=65 Score=20.00 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=26.8
Q ss_pred hhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEEE
Q 039883 30 VHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+....+|+|.+|...+.. ...+.+++++ ...+..|+++-
T Consensus 237 l~~aG~d~I~id~a~g~~~~~~~~v~~i~---~~~p~~~Vi~g 276 (490)
T 4avf_A 237 LVAAGVDVVVVDTAHGHSKGVIERVRWVK---QTFPDVQVIGG 276 (490)
T ss_dssp HHHTTCSEEEEECSCCSBHHHHHHHHHHH---HHCTTSEEEEE
T ss_pred HhhcccceEEecccCCcchhHHHHHHHHH---HHCCCceEEEe
Confidence 334479999999887653 2356788888 34456777774
No 180
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=32.02 E-value=55 Score=16.66 Aligned_cols=18 Identities=0% Similarity=-0.093 Sum_probs=12.7
Q ss_pred hhccCccEEEEeCCCCCC
Q 039883 30 VHVLAVDLIITDYCMPGM 47 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~ 47 (82)
+...+||+|++.+..-+.
T Consensus 58 ~~~~~pd~Vii~~G~ND~ 75 (190)
T 1ivn_A 58 LKQHQPRWVLVELGGNDG 75 (190)
T ss_dssp HHHHCCSEEEEECCTTTT
T ss_pred HHhcCCCEEEEEeecccc
Confidence 344579999997766554
No 181
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=31.68 E-value=50 Score=18.51 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=22.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
++| |++|...|. ...+.++... ...+|+++-|...+.
T Consensus 53 ~~D-VvIDFT~P~-a~~~~~~~~~-----~~g~~~ViGTTG~~~ 89 (228)
T 1vm6_A 53 SPD-VVIDFSSPE-ALPKTVDLCK-----KYRAGLVLGTTALKE 89 (228)
T ss_dssp CCS-EEEECSCGG-GHHHHHHHHH-----HHTCEEEECCCSCCH
T ss_pred CCC-EEEECCCHH-HHHHHHHHHH-----HcCCCEEEeCCCCCH
Confidence 577 788999998 3455555544 223566665544433
No 182
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=31.29 E-value=79 Score=18.45 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=22.4
Q ss_pred cCccEEEEeC------------CCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 33 LAVDLIITDY------------CMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 33 ~~~d~vi~d~------------~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+|+++++|- .+....-..+.+.++ ........++++++..
T Consensus 276 ~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~-~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 276 YPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK-KLLDKYKVPYIEIESP 328 (365)
T ss_dssp SCCSEEEEEECCCC-----------CCSHHHHHHHHH-HHHHGGGCCCEEEECS
T ss_pred cCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH-HHHHHcCCCEEEeCCC
Confidence 4799988872 122334556667664 1111225678888754
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=30.79 E-value=41 Score=17.63 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=23.3
Q ss_pred hccCcc--EEEEeCCCCCC--C---HHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 31 HVLAVD--LIITDYCMPGM--T---GCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 31 ~~~~~d--~vi~d~~~~~~--~---~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
....|+ ++++|--.... + ..+++..++ .........+|+++...
T Consensus 118 ~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~-~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 118 QKLGYGKARLVIDSVSALFLDKPAMARKISYYLK-RVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHH-HHHHHTTEEEEEEEC--
T ss_pred HhhCCCceEEEEECchHhhcCCHHHHHHHHHHHH-HHHHhCCCeEEEEeccC
Confidence 344799 99999854211 2 345555555 11123356677666543
No 184
>2x4l_A Ferric-siderophore receptor protein; transport; 1.50A {Streptomyces coelicolor}
Probab=30.68 E-value=50 Score=18.81 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHhhccCccEEEEeCCCC--CC--CHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMP--GM--TGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~--~~--~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||...... .. ...+....|+ . . +|++++..
T Consensus 104 E~I~~l~PDLIi~~~~~~~~~~~~~~~~~~~~L~---~-~--ipvv~~~~ 147 (325)
T 2x4l_A 104 EKYASLAPEVLITTTFDTAGTLWSVPEESKDKVA---K-L--APSVAISV 147 (325)
T ss_dssp HHHHHTCCSEEEEEECSTTCCCTTSCGGGHHHHH---H-H--SCEEEEEC
T ss_pred HHHhccCCCEEEEcccccccccccccHHHHHHHH---h-h--CCEEEEcc
Confidence 778888999999865421 00 1123455555 1 2 67888753
No 185
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=30.17 E-value=38 Score=18.96 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=22.8
Q ss_pred ccCccEEEEeCCCC---C---CCH----HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCMP---G---MTG----CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~~---~---~~~----~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
...|+++|+|.-.. + .+. .++.+.|+ .......++||+++...
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~-~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLK-GFAKSTGVVLVVICHLK 197 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHH-HHHHHHCCEEEEEEECC
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHH-HHHHHhCCeEEEEEecC
Confidence 34799999997544 2 111 23444554 11123357788887653
No 186
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=30.11 E-value=65 Score=19.32 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=24.9
Q ss_pred hhccCccEEEEeCCCCCCC-HHHHHHHHHhhcCCCCCccEEE
Q 039883 30 VHVLAVDLIITDYCMPGMT-GCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~-~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+....+|+|.+|....... ..+.++++| ...+.+||++
T Consensus 108 a~~aGvdvI~id~a~G~~~~~~e~I~~ir---~~~~~~~Vi~ 146 (361)
T 3r2g_A 108 LRDAGADFFCVDVAHAHAKYVGKTLKSLR---QLLGSRCIMA 146 (361)
T ss_dssp HHHTTCCEEEEECSCCSSHHHHHHHHHHH---HHHTTCEEEE
T ss_pred HHHcCCCEEEEeCCCCCcHhHHHHHHHHH---HhcCCCeEEE
Confidence 3344799999998764322 246788888 3345677777
No 187
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=29.94 E-value=42 Score=20.40 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=16.2
Q ss_pred cCccEEEEeCCCCCCCHHHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+||+||.|..++. +..+.+++.
T Consensus 113 ~~~d~vI~D~~~~~--~~~vA~~lg 135 (463)
T 2acv_A 113 NKVVGLVLDFFCVS--MIDVGNEFG 135 (463)
T ss_dssp TTEEEEEEEGGGGG--GHHHHHHTT
T ss_pred CCCeEEEECCcchh--HHHHHHHcC
Confidence 57999999997655 455555444
No 188
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=29.59 E-value=78 Score=17.66 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=27.5
Q ss_pred hhccCccEEEEeCCCC--CCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 30 VHVLAVDLIITDYCMP--GMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~--~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
+.....|.|++.-... ..+..++++++| . ..+|++++.+..
T Consensus 27 ~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik---~--~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 27 LCESGTDAVIIGGSDGVTEDNVLRMMSKVR---R--FLVPCVLEVSAI 69 (228)
T ss_dssp HHTSSCSEEEECCCSCCCHHHHHHHHHHHT---T--SSSCEEEECSCG
T ss_pred HHHcCCCEEEECCcCCCCHHHHHHHHHHhh---c--cCCCEEEeCCCH
Confidence 4455689999887643 223455666666 3 689999988763
No 189
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=29.47 E-value=30 Score=19.09 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=12.9
Q ss_pred HHhhccCccEEEEeCC
Q 039883 28 EEVHVLAVDLIITDYC 43 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~ 43 (82)
|.+...+||+||.+..
T Consensus 73 E~I~al~PDLIi~~~~ 88 (292)
T 3tef_A 73 ETIYTQKPDLIVIGPR 88 (292)
T ss_dssp HHHHHTCCSEEEECGG
T ss_pred HHHhcCCCCEEEeccc
Confidence 6788889999998643
No 190
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=29.08 E-value=30 Score=19.27 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=22.8
Q ss_pred CccEEEEeCCCC--CCC---H---HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMP--GMT---G---CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~--~~~---~---~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.|++||+|--.. ..+ - ..+++.|+ .........+|+++...
T Consensus 133 ~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~-~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHIEEENASGPMAQVIGRME-AIAADTGCSIVFLHHAS 181 (279)
T ss_dssp TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH-HHHHHHCCEEEEEEEC-
T ss_pred CCCEEEECCHHHhcCCCcCchHHHHHHHHHHH-HHHHHcCCEEEEEecCC
Confidence 699999997443 222 2 44555555 11123356777777543
No 191
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=28.93 E-value=47 Score=20.08 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=25.0
Q ss_pred ccCccEEEEeCCC--CCC-------CH----HHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCM--PGM-------TG----CELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~--~~~-------~~----~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
...+++|++|.-- ... +- .++.+.|+ .-.....+|||+++...
T Consensus 308 ~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk-~lAke~~v~vi~lsql~ 363 (444)
T 2q6t_A 308 QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLK-ALARELGIPIIALSQLS 363 (444)
T ss_dssp HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHH-HHHHHHTSCEEEEEECC
T ss_pred HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHH-HHHHHhCCeEEEEecCC
Confidence 3479999999842 111 11 23445555 22234568999998643
No 192
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=28.75 E-value=68 Score=16.74 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=24.0
Q ss_pred ccCccEEEEeCCCCCC--CHH---HHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 32 VLAVDLIITDYCMPGM--TGC---ELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~--~~~---~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
..+||+|++-=.+-+. ... ++++.++ . ...|++++.++.+.
T Consensus 30 ~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~---~--~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 30 DTGADAIALIGNLMPKAAKSRDYAAFFRILS---E--AHLPTAYVPGPQDA 75 (228)
T ss_dssp HHTCSEEEEESCSSCTTCCHHHHHHHHHHHG---G--GCSCEEEECCTTSC
T ss_pred hcCCCEEEECCCCCCCCCCHHHHHHHHHHHH---h--cCCcEEEECCCCCc
Confidence 3379998884444332 222 3555555 2 23578888887664
No 193
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=28.51 E-value=44 Score=19.10 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=13.8
Q ss_pred HHHHHHHHhhcCCCCCccEEEEee
Q 039883 50 CELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+++++.+| .....+|+++++-
T Consensus 85 ~~~v~~~r---~~~~~~Pivlm~Y 105 (271)
T 3nav_A 85 FELIAQIR---ARNPETPIGLLMY 105 (271)
T ss_dssp HHHHHHHH---HHCTTSCEEEEEC
T ss_pred HHHHHHHH---hcCCCCCEEEEec
Confidence 44566666 3346789999873
No 194
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=28.32 E-value=83 Score=17.60 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHH
Q 039883 35 VDLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
-.+.++|..+|+.+-.++.+.|.
T Consensus 192 sElyF~d~lWPdF~~~~l~~Ai~ 214 (225)
T 3ugs_B 192 AEIYFSETLFPSLTKREFKRIIK 214 (225)
T ss_dssp CEEEEECSCSTTCCHHHHHHHHH
T ss_pred eEEEECCCCCccCCHHHHHHHHH
Confidence 34677999999999999999886
No 195
>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}
Probab=28.19 E-value=78 Score=17.47 Aligned_cols=34 Identities=35% Similarity=0.314 Sum_probs=21.8
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||.... . +....|+ . . .|++++..
T Consensus 72 E~i~~l~PDlIi~~~~---~---~~~~~L~---~-~--~pvv~~~~ 105 (277)
T 4b8y_A 72 EKVAKEKPDLIIVYST---D---KDIKKYQ---K-V--APTVVVDY 105 (277)
T ss_dssp HHHHHTCCSEEEEETT---C---TTHHHHH---H-H--SCEEEECG
T ss_pred HHHhhCCCCEEEecCC---H---HHHHHHH---h-h--CCEEEEcC
Confidence 7788889999998652 1 2244555 1 1 57777754
No 196
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A
Probab=28.09 E-value=69 Score=17.69 Aligned_cols=35 Identities=37% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||..... .+....|+ .. .|++++..
T Consensus 65 E~i~~l~PDlIi~~~~~-----~~~~~~L~---~~---~pvv~~~~ 99 (279)
T 3g9q_A 65 EKVIDLNPDLIIVWTTQ-----GADIKKLE---KI---APTVAVKY 99 (279)
T ss_dssp HHHHTTCCSEEEEECC-------CCHHHHH---HH---SCEEEECT
T ss_pred HHHhcCCCCEEEEcCCC-----HHHHHHHH---hh---CCEEEEcC
Confidence 77888899999998421 22345555 12 47777753
No 197
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=27.76 E-value=85 Score=17.55 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=26.0
Q ss_pred ccCccEEEE--eCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 32 VLAVDLIIT--DYCMPGMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 32 ~~~~d~vi~--d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
...+|.|++ |+...+....+++..++ .. .+++++.++.+.
T Consensus 36 ~~~~D~ii~~GDlv~~g~~~~~~~~~l~---~~---~~~~~v~GNhD~ 77 (270)
T 3qfm_A 36 QLGVDEYWLLGDILMPGTGRRRILDLLD---QL---PITARVLGNWED 77 (270)
T ss_dssp HTTCCEEEECSCCSSSSSCSHHHHHHHH---TS---CEEEECCCHHHH
T ss_pred hcCCCEEEEcCCCCCCCCCHHHHHHHHH---cc---CCEEEEcCChHH
Confidence 346898887 66555555678888888 22 256666665543
No 198
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=27.76 E-value=56 Score=18.41 Aligned_cols=39 Identities=8% Similarity=-0.081 Sum_probs=24.1
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+...+||+|++... +.....+++.++ .....+|++...+
T Consensus 186 l~~~~~dav~~~~~--~~~a~~~~~~~~---~~g~~~p~i~~~g 224 (362)
T 3snr_A 186 LVAANPDAILVGAS--GTAAALPQTTLR---ERGYNGLIYQTHG 224 (362)
T ss_dssp HHHHCCSEEEEECC--HHHHHHHHHHHH---HTTCCSEEEECGG
T ss_pred HHhcCCCEEEEecC--cchHHHHHHHHH---HcCCCccEEeccC
Confidence 44557999888542 334666777777 3455667754443
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=27.64 E-value=40 Score=19.36 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=21.3
Q ss_pred Ccc--EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVD--LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.|+ ++++| -..+.+....++.++ ......+|++|-
T Consensus 219 ~P~e~lLvLD-ptsglD~~~~~~~~~----~~~g~t~iiiTh 255 (302)
T 3b9q_A 219 APNEILLVLD-GNTGLNMLPQAREFN----EVVGITGLILTK 255 (302)
T ss_dssp CCSEEEEEEE-GGGGGGGHHHHHHHH----HHTCCCEEEEEC
T ss_pred CCCeeEEEEe-CCCCcCHHHHHHHHH----HhcCCCEEEEeC
Confidence 488 88899 555666666555554 122345666664
No 200
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=27.60 E-value=21 Score=17.48 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=20.3
Q ss_pred HhhccCccEEEEeCCCCCCCHHHH----HHHHHhhcCCCCCccEEEEeeC
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCEL----IKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~----~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+...+|+|++..+-...-. .+ ...+- .....||+++-..
T Consensus 104 ~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl----~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 104 IAEQENVDLIVVGSHGRHGLA-LLLGSTANSVL----HYAKCDVLAVRLR 148 (150)
T ss_dssp HHHHTTCSEEEEEEC---------CCCHHHHHH----HHCSSEEEEEECC
T ss_pred HHHHcCCCEEEEecCCCCCcC-eEecchHHHHH----HhCCCCEEEEeCC
Confidence 344558999999876433211 11 22222 1334788887654
No 201
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.51 E-value=81 Score=17.20 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=21.0
Q ss_pred cCccEEEEeCCC----C---CCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 33 LAVDLIITDYCM----P---GMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 33 ~~~d~vi~d~~~----~---~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
..+|++|+|--+ | +....++.+.+. .|+|+++...
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~--------~pviLV~~~~ 150 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQ--------IPVLLVSAIK 150 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHT--------CCEEEEEECS
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcC--------CCEEEEEcCC
Confidence 368999988632 2 223455555554 5777777654
No 202
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=26.81 E-value=82 Score=17.94 Aligned_cols=39 Identities=5% Similarity=-0.152 Sum_probs=23.5
Q ss_pred HhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 29 EVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
.+....||+|++.... .....+++.++ ......|++...
T Consensus 209 ~~~~~~~dav~~~~~~--~~a~~~~~~~~---~~g~~~~~~~~~ 247 (386)
T 3sg0_A 209 KIIATKPDAVFIASAG--TPAVLPQKALR---ERGFKGAIYQTH 247 (386)
T ss_dssp HHHHTCCSEEEEECCS--GGGHHHHHHHH---HTTCCSEEECCG
T ss_pred HHHhcCCCEEEEecCc--chHHHHHHHHH---HcCCCCcEEecc
Confidence 3445579999886542 34667788887 334445655443
No 203
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=26.61 E-value=59 Score=16.36 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=22.4
Q ss_pred hhccCccEEEEeCCCCCC-CHH---HHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 30 VHVLAVDLIITDYCMPGM-TGC---ELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~-~~~---~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
.+...+|+|++...-... ..+ .....+- .....||+++-...
T Consensus 120 a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl----~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 120 VKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCV----KHAECPVMTIKRNA 165 (175)
T ss_dssp HHHHCCSEEEEEECCCC--------CHHHHHH----HHCSSCEEEEECCG
T ss_pred HHHhCCCEEEEeCCCCChhhhhhcCchHHHHH----hCCCCCEEEEcCCc
Confidence 344579999998764321 111 1222332 13458899887543
No 204
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=26.57 E-value=40 Score=19.25 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=13.5
Q ss_pred cCccEEEEeCCCCCCCH-----HHHHHHHH
Q 039883 33 LAVDLIITDYCMPGMTG-----CELIKKIK 57 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~~~-----~~~~~~l~ 57 (82)
.++|+|++|...|.... .++++.++
T Consensus 156 ~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~ 185 (294)
T 3adn_A 156 QTFDVIISDCTDPIGPGESLFTSAFYEGCK 185 (294)
T ss_dssp CCEEEEEECC----------CCHHHHHHHH
T ss_pred CCccEEEECCCCccCcchhccHHHHHHHHH
Confidence 46999999987764333 45666665
No 205
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=26.12 E-value=1.1e+02 Score=18.32 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=25.3
Q ss_pred HHhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+.+....+|+|.+|...... ...+.+++++ ...+.+++|+
T Consensus 114 ~~lieaGvd~I~idta~G~~~~~~~~I~~ik---~~~p~v~Vi~ 154 (366)
T 4fo4_A 114 KALVEAGVDVLLIDSSHGHSEGVLQRIRETR---AAYPHLEIIG 154 (366)
T ss_dssp HHHHHTTCSEEEEECSCTTSHHHHHHHHHHH---HHCTTCEEEE
T ss_pred HHHHhCCCCEEEEeCCCCCCHHHHHHHHHHH---HhcCCCceEe
Confidence 34455679999998754322 2356677777 3445677776
No 206
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=26.11 E-value=1.2e+02 Score=18.54 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHhhccCccEEEEeCCCCCC-CHHHHHHHHHhhcCCCCCccEEE
Q 039883 28 EEVHVLAVDLIITDYCMPGM-TGCELIKKIKLQSFTFREIPTVI 70 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~-~~~~~~~~l~~~~~~~~~~~vi~ 70 (82)
+++....+|+|++|...... ...+.+++++ ... ..|+++
T Consensus 150 ~~lveaGvdvIvldta~G~~~~~~e~I~~ik---~~~-~i~Vi~ 189 (400)
T 3ffs_A 150 KLLVEAGVDVIVLDSAHGHSLNIIRTLKEIK---SKM-NIDVIV 189 (400)
T ss_dssp HHHHHHTCSEEEECCSCCSBHHHHHHHHHHH---TTC-CCEEEE
T ss_pred HHHHHcCCCEEEEeCCCCCcccHHHHHHHHH---hcC-CCeEEE
Confidence 34445579999998776432 2267788888 333 677775
No 207
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=25.99 E-value=49 Score=19.10 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=18.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
++|++ +|...|.. ..+.+.... ...+|+|+-|...
T Consensus 88 ~aDVv-IDFT~p~a-~~~~~~~~l-----~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 88 NTEGI-LDFSQPQA-SVLYANYAA-----QKSLIHIIGTTGF 122 (288)
T ss_dssp SCSEE-EECSCHHH-HHHHHHHHH-----HHTCEEEECCCCC
T ss_pred CCCEE-EEcCCHHH-HHHHHHHHH-----HcCCCEEEECCCC
Confidence 68864 57776652 344444443 2235666655443
No 208
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=25.86 E-value=31 Score=20.01 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=16.3
Q ss_pred CccEEEEeCCCCCCCH-----HHHHHHHH
Q 039883 34 AVDLIITDYCMPGMTG-----CELIKKIK 57 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~-----~~~~~~l~ 57 (82)
++|+||+|..-|...+ .++.+.++
T Consensus 157 ~yDvIi~D~~dp~~~~~~L~t~eFy~~~~ 185 (294)
T 3o4f_A 157 TFDVIISDCTDPIGPGESLFTSAFYEGCK 185 (294)
T ss_dssp CEEEEEESCCCCCCTTCCSSCCHHHHHHH
T ss_pred cCCEEEEeCCCcCCCchhhcCHHHHHHHH
Confidence 6999999998775433 34455554
No 209
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=25.86 E-value=42 Score=20.34 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=23.3
Q ss_pred ccCccEEEEeCCCC----CC----CH---HHHHHHHHhhcCCCCCccEEEEee
Q 039883 32 VLAVDLIITDYCMP----GM----TG---CELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 32 ~~~~d~vi~d~~~~----~~----~~---~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
...|++|++|.--. .. .. .++.+.|+ .......+|||+++.
T Consensus 311 ~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk-~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK-ALARELEVPVIALSQ 362 (454)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH-HHHHHHTCCEEEEEC
T ss_pred HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH-HHHHHhCCeEEEEec
Confidence 34799999997322 11 11 23444554 222344688999886
No 210
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=25.85 E-value=49 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=14.1
Q ss_pred ccCccEEEEeCCCCCCCHHHHH
Q 039883 32 VLAVDLIITDYCMPGMTGCELI 53 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~~~ 53 (82)
...||+||+|.- |..+.+.++
T Consensus 122 ~~~yD~VIvDtp-Ptg~tLrlL 142 (374)
T 3igf_A 122 SGKYDTIVYDGT-GDAFTLRML 142 (374)
T ss_dssp TTCCSEEEEECC-CSHHHHHHH
T ss_pred ccCCCEEEEeCC-CChHHhhhh
Confidence 347999999986 444444443
No 211
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=25.54 E-value=43 Score=18.82 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=12.3
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
|.+...+||+||...
T Consensus 90 E~I~~l~PDLIi~~~ 104 (303)
T 3tny_A 90 ETIASLKPDLIIGNK 104 (303)
T ss_dssp HHHHHTCCSEEEEEH
T ss_pred HHHHcCCCCEEEEec
Confidence 678888999999753
No 212
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=25.50 E-value=60 Score=16.73 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=6.9
Q ss_pred CccEEEEeCC
Q 039883 34 AVDLIITDYC 43 (82)
Q Consensus 34 ~~d~vi~d~~ 43 (82)
.||+||+|.-
T Consensus 75 ~yD~viiD~~ 84 (206)
T 4dzz_A 75 DYDFAIVDGA 84 (206)
T ss_dssp TSSEEEEECC
T ss_pred CCCEEEEECC
Confidence 4777777763
No 213
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=25.47 E-value=81 Score=16.53 Aligned_cols=15 Identities=0% Similarity=-0.221 Sum_probs=10.6
Q ss_pred cCccEEEEeCCCCCC
Q 039883 33 LAVDLIITDYCMPGM 47 (82)
Q Consensus 33 ~~~d~vi~d~~~~~~ 47 (82)
.+||+|++-+..-+.
T Consensus 71 ~~pd~vvi~~G~ND~ 85 (240)
T 3mil_A 71 SNIVMATIFLGANDA 85 (240)
T ss_dssp CCEEEEEEECCTTTT
T ss_pred CCCCEEEEEeecCcC
Confidence 479999987655443
No 214
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=25.44 E-value=96 Score=17.36 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=25.0
Q ss_pred hhccCccEEEEeCCCCC--CC--------------------HHHHHHHHHhhcCCCCCccEEEEee
Q 039883 30 VHVLAVDLIITDYCMPG--MT--------------------GCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~--~~--------------------~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
+.....|+|-++.-..+ .+ .+++++.+| ...+.+|+++++.
T Consensus 40 l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir---~~~~~~Pi~~m~y 102 (262)
T 2ekc_A 40 VLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLR---KEFPDIPFLLMTY 102 (262)
T ss_dssp HHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HHCTTSCEEEECC
T ss_pred HHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHH---hhcCCCCEEEEec
Confidence 34446999888774433 11 335566776 3344789998753
No 215
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=25.00 E-value=69 Score=18.11 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=23.6
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
+....||+|++..... ....+++.++ .....+|++...
T Consensus 190 l~~~~~d~i~~~~~~~--~a~~~~~~~~---~~g~~~p~~~~~ 227 (358)
T 3hut_A 190 IEDEAPQAIYLAMAYE--DAAPFLRALR---ARGSALPVYGSS 227 (358)
T ss_dssp HHHHCCSEEEEESCHH--HHHHHHHHHH---HTTCCCCEEECG
T ss_pred HHhcCCCEEEEccCch--HHHHHHHHHH---HcCCCCcEEecC
Confidence 4445799988865432 3566777777 344467766543
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=24.89 E-value=89 Score=19.21 Aligned_cols=43 Identities=23% Similarity=0.182 Sum_probs=25.3
Q ss_pred ccCccEEEEeCCCC---C---CCHH----HHHHHHHhhcCCCCCccEEEEeeCC
Q 039883 32 VLAVDLIITDYCMP---G---MTGC----ELIKKIKLQSFTFREIPTVIISSEN 75 (82)
Q Consensus 32 ~~~~d~vi~d~~~~---~---~~~~----~~~~~l~~~~~~~~~~~vi~ls~~~ 75 (82)
...+++|++|.-.. . .+-. ++++.|+ .......++|++++...
T Consensus 352 ~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk-~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 352 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLK-GFAKSTGVVLVVICHLK 404 (503)
T ss_dssp TTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHH-HHHHHHTCEEEEEEECC
T ss_pred hcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCeEEEEEcCC
Confidence 44799999997432 1 1221 3444554 22235578899987655
No 217
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=24.12 E-value=53 Score=17.41 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=22.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 36 d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
..+++|.......+..++..++ .. ....+..|++|-
T Consensus 37 ~~iLiD~G~~~~~~~~~~~~l~-~~-~g~~i~~vi~TH 72 (223)
T 1m2x_A 37 GVVVIDCPWGEDKFKSFTDEIY-KK-HGKKVIMNIATH 72 (223)
T ss_dssp EEEEESCCSSGGGHHHHHHHHH-HH-HCCCEEEEECSS
T ss_pred EEEEEeCCCChhHHHHHHHHHH-HH-hCCCeEEEEecc
Confidence 4788898876555666777776 21 023455666664
No 218
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=24.07 E-value=77 Score=18.27 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=22.2
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+....||+|++... +.....+++.++ .....+|++..
T Consensus 194 l~~~~~dav~~~~~--~~~a~~~~~~~~---~~g~~~~~~~~ 230 (392)
T 3lkb_A 194 FEQAGVEYVVHQNV--AGPVANILKDAK---RLGLKMRHLGA 230 (392)
T ss_dssp HHHTTCCEEEEESC--HHHHHHHHHHHH---HTTCCCEEEEC
T ss_pred HHhcCCCEEEEecC--cchHHHHHHHHH---HcCCCceEEEe
Confidence 34457999887553 234566777777 34445665544
No 219
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=23.77 E-value=61 Score=17.65 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=15.6
Q ss_pred CHHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 48 TGCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+..+.++..+ ....++|.+|+...
T Consensus 123 ~~i~~~~~Ak-----~~G~~vI~IT~~~~ 146 (243)
T 3cvj_A 123 VPVEMAIESR-----NIGAKVIAMTSMKH 146 (243)
T ss_dssp HHHHHHHHHH-----HHTCEEEEEECHHH
T ss_pred HHHHHHHHHH-----HCCCEEEEEeCCcc
Confidence 3455666666 34578999997643
No 220
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=23.55 E-value=54 Score=19.02 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=11.7
Q ss_pred hccCccEEEEeCCCC
Q 039883 31 HVLAVDLIITDYCMP 45 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~ 45 (82)
...++|+|++|+...
T Consensus 153 ~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 153 EVIPGDTLLCDIGES 167 (282)
T ss_dssp CCCCCSEEEECCCCC
T ss_pred CCCCcCEEEecCccC
Confidence 345799999998665
No 221
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=23.30 E-value=1.2e+02 Score=17.56 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=36.4
Q ss_pred HHHHHhcCCCceeeec-Ch-h----HHhhccCccEEEEeCCCC-----CCCHHHHHHHHHhhcCCCCCccEEEEeeCCch
Q 039883 9 LSRLMSDGSDGFDLSP-TD-T----EEVHVLAVDLIITDYCMP-----GMTGCELIKKIKLQSFTFREIPTVIISSENIL 77 (82)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~d~vi~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~vi~ls~~~~~ 77 (82)
+.....+...||.+.. +. + ..+....+++| +.+..| +....++++.++ . ...+|||+=.+-..+
T Consensus 125 v~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~---e-~~~vPVI~eGGI~TP 199 (265)
T 1wv2_A 125 LKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAV-MPLAGLIGSGLGICNPYNLRIIL---E-EAKVPVLVDAGVGTA 199 (265)
T ss_dssp HHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEE-EECSSSTTCCCCCSCHHHHHHHH---H-HCSSCBEEESCCCSH
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEE-EeCCccCCCCCCcCCHHHHHHHH---h-cCCCCEEEeCCCCCH
Confidence 3333445566777652 32 2 44556678887 444333 223377888888 2 457888874444443
No 222
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=23.24 E-value=38 Score=18.28 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=22.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 36 d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+|+|.......+..+++.++ .. ....+..|++|-.
T Consensus 58 ~~iLID~G~~~~~~~~l~~~l~-~~-~~~~i~~vi~TH~ 94 (243)
T 4hl2_A 58 RVLVVDTAWTDDQTAQILNWIK-QE-INLPVALAVVTHA 94 (243)
T ss_dssp EEEEESCCSSHHHHHHHHHHHH-HH-TCCCEEEEEECSS
T ss_pred cEEEEECCCCCccHHHHHHHHH-Hh-hCCCeeEEEECCC
Confidence 3788898865445666777777 21 1334556777643
No 223
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=23.22 E-value=56 Score=18.85 Aligned_cols=13 Identities=15% Similarity=0.113 Sum_probs=10.7
Q ss_pred cCccEEEEeCCCC
Q 039883 33 LAVDLIITDYCMP 45 (82)
Q Consensus 33 ~~~d~vi~d~~~~ 45 (82)
.++|+||+|+.-.
T Consensus 138 ~~~DvVLSDMAPn 150 (269)
T 2px2_A 138 EISDTLLCDIGES 150 (269)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEeCCCCC
Confidence 3689999999764
No 224
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.86 E-value=34 Score=18.05 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=19.5
Q ss_pred ccEEEEeCCCCCCCH-HHHHHHHHhhcCCCCCccEEEEee
Q 039883 35 VDLIITDYCMPGMTG-CELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 35 ~d~vi~d~~~~~~~~-~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
||++++|-.-+..+. .+.+..+. -.+|++-+.-
T Consensus 80 PDLilIDGGkgQl~aA~~vl~elg------~~i~v~glAK 113 (159)
T 2nrr_A 80 PNLLFVDGGIGQVNAAIEALKEIG------KDCPVVGLAK 113 (159)
T ss_dssp CSEEEESSCHHHHHHHHHHHHHTT------CCCCEEEEC-
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcC------CCccEEEEEc
Confidence 999999976665433 22333322 2467777664
No 225
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=22.83 E-value=77 Score=18.04 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=22.5
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+....||+|++... +.....+++.++ .....+|++..
T Consensus 192 l~~~~~d~v~~~~~--~~~a~~~~~~~~---~~g~~~~~i~~ 228 (364)
T 3lop_A 192 LLAADVQAIFLGAT--AEPAAQFVRQYR---ARGGEAQLLGL 228 (364)
T ss_dssp HHHSCCSEEEEESC--HHHHHHHHHHHH---HTTCCCEEEEC
T ss_pred HHhCCCCEEEEecC--cHHHHHHHHHHH---HcCCCCeEEEe
Confidence 44557999888543 224666777777 34455665433
No 226
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=22.75 E-value=1.1e+02 Score=17.90 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhcCCCCCccEEEE
Q 039883 49 GCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+-+++++|| .......+||.+-
T Consensus 114 A~~iv~rlR-~~~~l~~vPI~ia 135 (287)
T 3n2q_A 114 AKQLIEAIN-KNDKYNKSPITFA 135 (287)
T ss_dssp HHHHHHHHH-HCTTCCCCCEEEE
T ss_pred HHHHHHHHH-hcCCCCCCCEEEE
Confidence 345678888 5456788888765
No 227
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=22.44 E-value=1.2e+02 Score=17.70 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 49 GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
..+.++..+ ....++|.+|+..+..
T Consensus 118 ~~~a~~~ak-----~~Ga~vi~IT~~~~S~ 142 (355)
T 2a3n_A 118 SVAIAEWCK-----AQGIRVVAITKNADSP 142 (355)
T ss_dssp HHHHHHHHH-----HTTCEEEEEESCTTSH
T ss_pred HHHHHHHHH-----HCCCeEEEEECCCCCh
Confidence 344555555 3367899999875543
No 228
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=22.43 E-value=1.7e+02 Score=19.29 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=26.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 34 AVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 34 ~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
...++++++.- ..+++.++ .....+||.+++..
T Consensus 32 ~~~~~~~~~~~-----~~~~~~~~---~~~~~~p~~~~~~~ 64 (730)
T 1c4k_A 32 DVGAVIAMDYE-----TDVIDAAD---ATKFGIPVFAVTKD 64 (730)
T ss_dssp SEEEEEEETTC-----HHHHHHHH---TTCSCCCEEEEESC
T ss_pred ceeEEEEECcH-----HHHHHHHH---HhCCCCCEEEEecc
Confidence 46789999872 24888888 78999999999875
No 229
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Probab=22.17 E-value=51 Score=18.07 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=12.4
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
|.+...+||+||...
T Consensus 60 E~i~~l~PDLIi~~~ 74 (266)
T 1efd_N 60 ELLTEMKPSFMVWSA 74 (266)
T ss_dssp HHHHHHCCSEEEEET
T ss_pred HHHHhcCCCEEEecc
Confidence 778888999999863
No 230
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=21.92 E-value=1.2e+02 Score=17.16 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||..... ..+....|+ .. . |++++.
T Consensus 90 E~I~~l~PDLIi~~~~~----~~~~~~~L~---~~--g-p~v~~~ 124 (311)
T 2wi8_A 90 EKILEMKPDVILASTKF----PEKTLQKIS---TA--G-TTIPVS 124 (311)
T ss_dssp HHHHHHCCSEEEEETTS----CHHHHHHHH---TT--S-CEEEEC
T ss_pred HHHHhCCCCEEEEcCcc----CHHHHHHHH---hh--C-CEEEee
Confidence 67778899999986432 245667777 32 2 566664
No 231
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=21.88 E-value=1.1e+02 Score=17.84 Aligned_cols=35 Identities=20% Similarity=0.001 Sum_probs=20.0
Q ss_pred EEeCCCCCCC--HHHHHHHHHhhcCCCCCccEEEEeeCCchh
Q 039883 39 ITDYCMPGMT--GCELIKKIKLQSFTFREIPTVIISSENILA 78 (82)
Q Consensus 39 i~d~~~~~~~--~~~~~~~l~~~~~~~~~~~vi~ls~~~~~~ 78 (82)
++-+..++.+ ..+.++..+ ....++|.+|+..+..
T Consensus 104 vI~iS~SG~T~e~l~a~~~ak-----~~Ga~vIaIT~~~~S~ 140 (342)
T 1j5x_A 104 AFLFSRTGNTTEVLLANDVLK-----KRNHRTIGITIEEESR 140 (342)
T ss_dssp EEEECSSSCCHHHHHHHHHHH-----HTTEEEEEEESCTTSH
T ss_pred EEEEcCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCH
Confidence 3334444433 345555555 3367899999865543
No 232
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=21.80 E-value=56 Score=15.59 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=9.9
Q ss_pred hccCccEEEEeCCC
Q 039883 31 HVLAVDLIITDYCM 44 (82)
Q Consensus 31 ~~~~~d~vi~d~~~ 44 (82)
+...+|+|++..+-
T Consensus 106 ~~~~~dliV~G~~g 119 (138)
T 1q77_A 106 EGKGYELVVWACYP 119 (138)
T ss_dssp TTSCCSEEEECSCC
T ss_pred HhcCCCEEEEeCCC
Confidence 34478999987663
No 233
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=21.80 E-value=51 Score=18.51 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
|.+...+||+||.... ..+....|+ .. .|++++..
T Consensus 89 E~i~~l~PDlIi~~~~-----~~~~~~~L~---~~---~p~v~~~~ 123 (303)
T 3gfv_A 89 DKVAELDPDLIIISAR-----QSESYKEFS---KI---APTIYLGV 123 (303)
T ss_dssp HHHHHTCCSEEEECGG-----GGGGHHHHH---HH---SCEEECCC
T ss_pred HHHHhCCCCEEEEcCc-----chhHHHHHH---hh---CCEEEEcC
Confidence 7788889999998531 123455555 11 26776653
No 234
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=21.75 E-value=83 Score=18.11 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=23.7
Q ss_pred CccEEEEeCCCCCC---CHH-----------HHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 34 AVDLIITDYCMPGM---TGC-----------ELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 34 ~~d~vi~d~~~~~~---~~~-----------~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
..|+||+-...+.. ... ++++.+. ...+...+|++|.+.+
T Consensus 67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~---~~~~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVS---KYAPDSIVIVVTNPVD 120 (319)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHH---HHCTTCEEEECSSSHH
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---hhCCCeEEEEeCCcHH
Confidence 58999998876654 333 3444454 2245666666665543
No 235
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=21.68 E-value=1.9e+02 Score=19.49 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHH
Q 039883 16 GSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIK 57 (82)
Q Consensus 16 ~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~ 57 (82)
...||++...+. ++.....+|+|.+...+... ...++++.|+
T Consensus 629 ~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 629 ADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred HhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHH
Confidence 356777765432 34456689999988776532 2345667777
No 236
>3mwf_A Iron-regulated ABC transporter siderophore-bindin SIRA; ABC transporter binding protein, transport protein; HET: SE8; 1.70A {Staphylococcus aureus subsp} PDB: 3mwg_A
Probab=21.49 E-value=57 Score=18.21 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.5
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
|.+...+||+||...
T Consensus 77 E~i~~l~PDlIi~~~ 91 (298)
T 3mwf_A 77 EEISKLKPDLIVASK 91 (298)
T ss_dssp HHHHHTCCSEEEEEH
T ss_pred HHHHhCCCCEEEEcC
Confidence 677888999999865
No 237
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=21.48 E-value=1.5e+02 Score=19.83 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=26.3
Q ss_pred CCCceeeecChh--------HHhhccCccEEEEeCCCCCC--CHHHHHHHHH
Q 039883 16 GSDGFDLSPTDT--------EEVHVLAVDLIITDYCMPGM--TGCELIKKIK 57 (82)
Q Consensus 16 ~~~~~~~~~~~~--------~~~~~~~~d~vi~d~~~~~~--~~~~~~~~l~ 57 (82)
...||++...+. ++.....+|+|.+...+... ...++++.|+
T Consensus 621 ~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 621 ADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp HHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred HhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHH
Confidence 346777755432 34556689999998877532 2345667777
No 238
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=21.44 E-value=50 Score=19.92 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=22.4
Q ss_pred hccCccEEEEeCCCC----CCCH-----------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 31 HVLAVDLIITDYCMP----GMTG-----------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~----~~~~-----------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
....|+++++|.-.. ..+| .++++.|+ .......++||+++..
T Consensus 270 ~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~-~lake~gitVIlv~Hv 327 (400)
T 3lda_A 270 SESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQ-RLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHH-HHHHHHCCEEEEEEEC
T ss_pred HhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHH-HHHHHcCCEEEEEEee
Confidence 345799999997322 2222 33445554 1112345677777654
No 239
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.21 E-value=62 Score=19.25 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=20.1
Q ss_pred Ccc--EEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 34 AVD--LIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 34 ~~d--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
.|+ ++++| -..+.+....++.+. ......+|++|-
T Consensus 276 ~P~e~lLvLD-pttglD~~~~~~~~~----~~~g~t~iiiTh 312 (359)
T 2og2_A 276 APNEILLVLD-GNTGLNMLPQAREFN----EVVGITGLILTK 312 (359)
T ss_dssp CCSEEEEEEE-GGGGGGGHHHHHHHH----HHTCCCEEEEES
T ss_pred CCCceEEEEc-CCCCCCHHHHHHHHH----HhcCCeEEEEec
Confidence 488 88888 555555555555544 122345666664
No 240
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.00 E-value=1.1e+02 Score=16.29 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=19.9
Q ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 34 AVDLIITDYC-MPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 34 ~~d~vi~d~~-~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
++|+|++|=. .-+.+-.++++.+. .. ..+||+..
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~---~~--~~~Vi~~G 115 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIA---ES--GRRVICAG 115 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHH---HT--TCEEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHH---hC--CCEEEEEe
Confidence 4899999852 21223366666665 22 56777653
No 241
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=20.83 E-value=1.1e+02 Score=16.23 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=23.9
Q ss_pred hhccCccEEEEeCCCCCC--C---HHHHHHHHHhhcCCCCCccEEEEeeCCc
Q 039883 30 VHVLAVDLIITDYCMPGM--T---GCELIKKIKLQSFTFREIPTVIISSENI 76 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~--~---~~~~~~~l~~~~~~~~~~~vi~ls~~~~ 76 (82)
+....|+++++|.-..-. + ..+.+..+. ........++++++....
T Consensus 124 ~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~-~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 124 IRDINAKRVVVDSVTTLYINKPAMARSIILQLK-RVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp HHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHH-HHHHHTTCEEEEEEECC-
T ss_pred HHHhCCCEEEECCchHhhcCCHHHHHHHHHHHH-HHHHHCCCeEEEEecCCC
Confidence 344579999999743211 2 234444443 111233567777765543
No 242
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=20.83 E-value=54 Score=17.50 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=21.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEee
Q 039883 36 DLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIISS 73 (82)
Q Consensus 36 d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls~ 73 (82)
..+|+|..........+.+.++ .....+..|++|-
T Consensus 43 ~~iliD~g~~~~~~~~~~~~l~---~~g~~i~~ii~TH 77 (228)
T 1jjt_A 43 EAYLIDTPFTAKDTEKLVTWFV---ERGYKIKGSISSH 77 (228)
T ss_dssp EEEEESCCSSHHHHHHHHHHHH---TTTCEEEEEECSS
T ss_pred cEEEEeCCCChhhHHHHHHHHH---HcCCCeeEEEeCC
Confidence 4788888775434456777777 3333455566664
No 243
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=20.83 E-value=96 Score=15.70 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHhhccCccEEEEeC--CCCCCCH------HHHHHHHHhhcCCCCCccEEEEeeC
Q 039883 28 EEVHVLAVDLIITDY--CMPGMTG------CELIKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~--~~~~~~~------~~~~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
+.+...+++.+++.+ +|.+..+ ..|.+.|+ ... .+||.+.-..
T Consensus 47 ~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~---~~~-~lpV~~~DER 97 (138)
T 1nu0_A 47 RLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIH---GRF-GVEVKLHDER 97 (138)
T ss_dssp HHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHH---HHH-CCCEEEEEEE
T ss_pred HHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHH---HHh-CCCEEEEcCC
Confidence 445666899888874 5666555 56777776 222 4788776443
No 244
>4hn3_A LMO1757 protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 2.05A {Listeria monocytogenes}
Probab=20.78 E-value=99 Score=18.59 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEe
Q 039883 49 GCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
+-+++++|| .......+||++--
T Consensus 179 A~~iv~rlR-~~~~l~nvPI~ial 201 (350)
T 4hn3_A 179 SATVLNRIR-QTKGLENVPVTIAI 201 (350)
T ss_dssp HHHHHHHHT-TSTTCSSSCEEEEE
T ss_pred HHHHHHHHH-hcCCCCCCCEEEEE
Confidence 455778888 44556788887653
No 245
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=20.73 E-value=69 Score=18.32 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH
Q 039883 36 DLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 36 d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+.++|..+|+.+-.++.+.|.
T Consensus 220 ElyF~d~lWPdF~~~dl~~Ai~ 241 (256)
T 4h8e_A 220 EFIFNQKLWPDFDEDELIKCIK 241 (256)
T ss_dssp EEEECCSCGGGCCHHHHHHHHH
T ss_pred EEEECCCCCccCCHHHHHHHHH
Confidence 3566899999999999999886
No 246
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=20.49 E-value=51 Score=16.58 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=22.5
Q ss_pred hhccCccEEEEeCCCCCCCHHHH----HHHHHhhcCCCCCccEEEEeeC
Q 039883 30 VHVLAVDLIITDYCMPGMTGCEL----IKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~----~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
.+...+|+|++...-...-.--+ ...+- .....||+++...
T Consensus 115 a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl----~~a~~PVlvV~~~ 159 (163)
T 1tq8_A 115 ADEEKADLLVVGNVGLSTIAGRLLGSVPANVS----RRAKVDVLIVHTT 159 (163)
T ss_dssp HHHTTCSEEEEECCCCCSHHHHHTBBHHHHHH----HHTTCEEEEECCC
T ss_pred HHhcCCCEEEECCCCCCcccceeeccHHHHHH----HhCCCCEEEEeCC
Confidence 34568999999887443211111 12222 1345788888643
No 247
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=20.43 E-value=70 Score=18.24 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH
Q 039883 36 DLIITDYCMPGMTGCELIKKIK 57 (82)
Q Consensus 36 d~vi~d~~~~~~~~~~~~~~l~ 57 (82)
.+.++|..+|+.+-.++.+.|+
T Consensus 213 ElyFtd~lWPdF~~~dl~~Ai~ 234 (253)
T 3sgv_B 213 ELYFTDVLWPDFDEQDFEGALN 234 (253)
T ss_dssp EEEECCSCGGGCCHHHHHHHHH
T ss_pred EEEECCCCCccCCHHHHHHHHH
Confidence 3556899999999999998886
No 248
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=20.41 E-value=57 Score=18.27 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred HHhhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEEe
Q 039883 28 EEVHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVIIS 72 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ls 72 (82)
|.+...+||+||..... .+....|+ .. .|++++.
T Consensus 89 E~i~~l~PDLIi~~~~~-----~~~~~~L~---~~---~p~v~~~ 122 (296)
T 2chu_A 89 EAINALKPDLIIISGRQ-----SKFYDKLK---EI---APTLFVG 122 (296)
T ss_dssp HHHHHTCCSEEEECTTT-----GGGHHHHH---TT---SCEEECC
T ss_pred HHHHhCCCCEEEEcCcc-----HHHHHHHH---hh---CCEEEEe
Confidence 77888899999985432 23456666 22 2666654
No 249
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=20.39 E-value=74 Score=17.97 Aligned_cols=37 Identities=11% Similarity=-0.106 Sum_probs=21.5
Q ss_pred hhccCccEEEEeCCCCCCCHHHHHHHHHhhcCCCCCccEEEE
Q 039883 30 VHVLAVDLIITDYCMPGMTGCELIKKIKLQSFTFREIPTVII 71 (82)
Q Consensus 30 ~~~~~~d~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~~vi~l 71 (82)
+....||+|++.... .....+++.++ .....+|++..
T Consensus 189 l~~~~~d~v~~~~~~--~~a~~~~~~~~---~~g~~~~~~~~ 225 (356)
T 3ipc_A 189 MKEAGVSIIYWGGLH--TEAGLIIRQAA---DQGLKAKLVSG 225 (356)
T ss_dssp HHHTTCCEEEEESCH--HHHHHHHHHHH---HHTCCCEEEEC
T ss_pred HHhcCCCEEEEccCc--hHHHHHHHHHH---HCCCCCcEEEe
Confidence 445579988875432 23556777776 33445666543
No 250
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=20.33 E-value=69 Score=18.14 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=11.1
Q ss_pred HhhccCccEEEEeCCC
Q 039883 29 EVHVLAVDLIITDYCM 44 (82)
Q Consensus 29 ~~~~~~~d~vi~d~~~ 44 (82)
.++..+||+|++....
T Consensus 91 ~l~~~~pDvv~~~~~~ 106 (364)
T 1f0k_A 91 IMKAYKPDVVLGMGGY 106 (364)
T ss_dssp HHHHHCCSEEEECSST
T ss_pred HHHhcCCCEEEEeCCc
Confidence 3455689999997443
No 251
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=20.28 E-value=52 Score=17.49 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=10.8
Q ss_pred hccCccEEEEeCCCC
Q 039883 31 HVLAVDLIITDYCMP 45 (82)
Q Consensus 31 ~~~~~d~vi~d~~~~ 45 (82)
....|+++++|.-..
T Consensus 116 ~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 116 VESRYALLIVDSATA 130 (243)
T ss_dssp HHSCEEEEEEETSSG
T ss_pred hcCCceEEEEeCchH
Confidence 345799999997543
No 252
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=20.10 E-value=63 Score=18.65 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=28.9
Q ss_pred ccCccEEEEeCCCCCCCHHH-H-----HHHHHhhcCCCCCccEEEEeeC
Q 039883 32 VLAVDLIITDYCMPGMTGCE-L-----IKKIKLQSFTFREIPTVIISSE 74 (82)
Q Consensus 32 ~~~~d~vi~d~~~~~~~~~~-~-----~~~l~~~~~~~~~~~vi~ls~~ 74 (82)
..+||+||..++....-|.+ . +....| .....+|-|.+|..
T Consensus 82 ~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~E--a~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 82 GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQ--AALLGIPALAYSAY 128 (280)
T ss_dssp TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHH--HHHTTCCEEEEEEC
T ss_pred CCCCCEEEECCccCCcCCccccccchhHHHHHH--HHHcCCCeEEEEcc
Confidence 45799999999888777777 2 222221 24567899999974
No 253
>3be6_A Putative iron compound-binding protein of ABC TRA family; open form, closed form, group III periplasmic binding protei structural genomics; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A*
Probab=20.03 E-value=58 Score=18.11 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=12.2
Q ss_pred HHhhccCccEEEEeC
Q 039883 28 EEVHVLAVDLIITDY 42 (82)
Q Consensus 28 ~~~~~~~~d~vi~d~ 42 (82)
|.+...+||+||...
T Consensus 84 E~i~~l~PDLIi~~~ 98 (297)
T 3be6_A 84 EAIVAAKPDLIITEP 98 (297)
T ss_dssp HHHHHTCCSEEEECT
T ss_pred HHHhcCCCCEEEEcC
Confidence 778888999999753
Done!