Query 039884
Match_columns 757
No_of_seqs 180 out of 285
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:00:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 1E-112 3E-117 1023.6 58.5 730 2-753 29-792 (1266)
2 KOG1525 Sister chromatid cohes 99.0 9.9E-09 2.1E-13 126.5 18.4 197 2-212 444-647 (1266)
3 PTZ00429 beta-adaptin; Provisi 98.7 2.4E-05 5.3E-10 93.9 33.4 392 253-735 39-438 (746)
4 KOG1020 Sister chromatid cohes 98.3 0.027 6E-07 70.4 44.5 352 25-395 569-962 (1692)
5 PTZ00429 beta-adaptin; Provisi 98.2 0.0034 7.5E-08 75.7 35.7 142 210-357 69-210 (746)
6 PF01602 Adaptin_N: Adaptin N 98.2 0.00018 3.9E-09 83.4 24.0 135 211-353 44-179 (526)
7 PRK09687 putative lyase; Provi 98.1 3.5E-05 7.6E-10 82.8 13.7 145 230-391 41-186 (280)
8 PF01602 Adaptin_N: Adaptin N 98.1 0.013 2.7E-07 68.1 34.8 234 153-395 61-298 (526)
9 PRK09687 putative lyase; Provi 98.0 0.00024 5.3E-09 76.3 18.7 130 245-391 89-219 (280)
10 KOG2171 Karyopherin (importin) 97.9 0.053 1.1E-06 66.6 36.4 478 221-753 16-527 (1075)
11 PRK13800 putative oxidoreducta 97.8 0.0053 1.2E-07 76.3 27.9 269 42-390 628-896 (897)
12 KOG2025 Chromosome condensatio 97.8 0.054 1.2E-06 63.4 33.1 154 225-389 62-218 (892)
13 KOG1824 TATA-binding protein-i 97.8 0.16 3.5E-06 61.2 49.3 657 42-735 54-853 (1233)
14 KOG1020 Sister chromatid cohes 97.7 0.32 7E-06 61.3 41.2 115 279-394 808-922 (1692)
15 PF10508 Proteasom_PSMB: Prote 97.6 0.12 2.5E-06 60.4 31.8 143 247-390 120-269 (503)
16 KOG2023 Nuclear transport rece 97.4 0.016 3.6E-07 67.0 21.7 163 230-396 379-552 (885)
17 PF13646 HEAT_2: HEAT repeats; 97.4 0.0011 2.4E-08 57.6 8.9 83 292-389 4-88 (88)
18 PRK13800 putative oxidoreducta 97.3 0.0098 2.1E-07 74.0 20.4 138 224-393 667-804 (897)
19 KOG1824 TATA-binding protein-i 97.3 0.77 1.7E-05 55.7 37.2 561 169-749 436-1055(1233)
20 PF12717 Cnd1: non-SMC mitotic 97.3 0.011 2.4E-07 59.2 16.3 94 300-395 1-94 (178)
21 COG5096 Vesicle coat complex, 97.2 0.096 2.1E-06 62.9 25.9 143 207-394 53-196 (757)
22 KOG0414 Chromosome condensatio 97.1 1.5 3.3E-05 54.5 40.6 383 224-656 290-724 (1251)
23 PF12348 CLASP_N: CLASP N term 97.0 0.011 2.3E-07 61.2 13.0 146 247-395 54-208 (228)
24 KOG1060 Vesicle coat complex A 96.9 0.89 1.9E-05 54.2 29.0 149 207-363 69-217 (968)
25 PF12719 Cnd3: Nuclear condens 96.8 0.062 1.4E-06 58.3 18.2 96 254-353 35-141 (298)
26 COG5218 YCG1 Chromosome conden 96.8 1.3 2.8E-05 51.3 28.5 262 254-546 99-372 (885)
27 COG5096 Vesicle coat complex, 96.8 0.57 1.2E-05 56.5 26.6 128 255-393 28-156 (757)
28 PF10508 Proteasom_PSMB: Prote 96.7 0.25 5.4E-06 57.7 23.1 240 147-394 91-367 (503)
29 KOG0915 Uncharacterized conser 96.6 3.8 8.2E-05 52.4 33.0 297 57-385 792-1102(1702)
30 PF13646 HEAT_2: HEAT repeats; 96.6 0.015 3.2E-07 50.4 9.1 85 248-350 1-87 (88)
31 KOG0213 Splicing factor 3b, su 96.4 2.7 5.7E-05 50.1 27.6 322 42-394 560-955 (1172)
32 KOG1949 Uncharacterized conser 96.3 0.59 1.3E-05 55.0 21.9 244 226-494 164-426 (1005)
33 PF12460 MMS19_C: RNAPII trans 96.2 3.1 6.7E-05 47.4 27.3 305 49-363 57-402 (415)
34 PF12348 CLASP_N: CLASP N term 96.1 0.056 1.2E-06 55.8 11.9 134 187-355 72-206 (228)
35 cd00020 ARM Armadillo/beta-cat 96.1 0.02 4.4E-07 51.8 7.4 69 247-315 8-77 (120)
36 KOG1059 Vesicle coat complex A 95.9 4.4 9.6E-05 48.2 26.7 112 240-359 103-214 (877)
37 KOG2171 Karyopherin (importin) 95.9 6.9 0.00015 48.8 40.3 211 185-395 50-280 (1075)
38 PF12717 Cnd1: non-SMC mitotic 95.9 0.22 4.9E-06 49.8 14.6 86 229-317 8-93 (178)
39 KOG1060 Vesicle coat complex A 95.8 2 4.4E-05 51.4 23.6 131 254-394 43-173 (968)
40 KOG1242 Protein containing ada 95.8 2.4 5.2E-05 49.5 24.1 219 165-394 171-402 (569)
41 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.041 9E-07 49.7 6.7 69 322-391 23-94 (97)
42 PF14500 MMS19_N: Dos2-interac 95.2 3.3 7.1E-05 44.3 21.2 233 42-292 6-255 (262)
43 KOG1949 Uncharacterized conser 95.1 1.7 3.6E-05 51.4 19.4 126 251-382 225-360 (1005)
44 cd00020 ARM Armadillo/beta-cat 95.0 0.069 1.5E-06 48.3 6.9 100 292-391 12-118 (120)
45 PF01347 Vitellogenin_N: Lipop 95.0 5.5 0.00012 47.5 24.9 127 240-387 480-616 (618)
46 PLN03200 cellulose synthase-in 95.0 5.6 0.00012 53.3 26.0 145 246-394 609-765 (2102)
47 PF02985 HEAT: HEAT repeat; I 95.0 0.038 8.2E-07 39.0 3.9 29 327-355 1-29 (31)
48 KOG1059 Vesicle coat complex A 94.8 1.4 3E-05 52.2 18.0 169 224-393 159-365 (877)
49 KOG0212 Uncharacterized conser 94.8 11 0.00023 44.0 27.6 156 243-398 81-242 (675)
50 KOG2259 Uncharacterized conser 94.8 0.3 6.6E-06 57.0 12.5 127 263-393 175-310 (823)
51 PF13513 HEAT_EZ: HEAT-like re 94.6 0.052 1.1E-06 43.2 4.3 52 301-352 1-54 (55)
52 KOG0414 Chromosome condensatio 94.5 3.2 6.9E-05 51.8 20.8 269 228-520 896-1186(1251)
53 KOG1967 DNA repair/transcripti 94.5 0.53 1.1E-05 57.0 13.8 148 245-392 866-1023(1030)
54 KOG2023 Nuclear transport rece 94.4 0.83 1.8E-05 53.6 14.9 159 167-357 127-287 (885)
55 PF10363 DUF2435: Protein of u 94.3 0.42 9E-06 42.8 9.7 88 286-377 2-90 (92)
56 PF13513 HEAT_EZ: HEAT-like re 94.2 0.043 9.4E-07 43.7 3.0 52 340-391 1-55 (55)
57 KOG1062 Vesicle coat complex A 94.0 19 0.00041 43.7 26.0 223 245-540 106-331 (866)
58 COG5098 Chromosome condensatio 93.9 0.38 8.3E-06 56.4 10.7 104 291-394 303-416 (1128)
59 TIGR02270 conserved hypothetic 93.8 0.67 1.5E-05 52.7 12.6 118 248-391 88-205 (410)
60 KOG1062 Vesicle coat complex A 93.6 22 0.00048 43.1 31.8 118 254-379 321-444 (866)
61 KOG1061 Vesicle coat complex A 93.5 0.78 1.7E-05 54.7 12.7 149 205-359 45-193 (734)
62 smart00638 LPD_N Lipoprotein N 93.5 3.8 8.3E-05 48.5 18.9 142 229-386 421-571 (574)
63 PF12755 Vac14_Fab1_bd: Vacuol 93.0 0.41 8.9E-06 43.3 7.6 86 263-348 3-90 (97)
64 TIGR02270 conserved hypothetic 93.0 1 2.3E-05 51.1 12.5 124 249-393 120-267 (410)
65 KOG2259 Uncharacterized conser 92.9 0.26 5.6E-06 57.6 7.4 142 246-391 281-473 (823)
66 COG1413 FOG: HEAT repeat [Ener 92.7 1.8 3.8E-05 47.4 13.6 120 247-391 44-176 (335)
67 KOG2011 Sister chromatid cohes 92.3 0.27 5.8E-06 60.7 7.0 103 291-393 291-399 (1048)
68 PF12231 Rif1_N: Rap1-interact 92.2 23 0.0005 39.8 27.8 322 44-396 2-355 (372)
69 COG5098 Chromosome condensatio 92.2 1.9 4E-05 51.0 13.1 132 227-358 280-418 (1128)
70 PF12765 Cohesin_HEAT: HEAT re 91.8 0.23 4.9E-06 37.8 3.7 37 313-349 5-41 (42)
71 KOG2956 CLIP-associating prote 91.6 7.5 0.00016 44.3 16.6 154 257-420 341-498 (516)
72 KOG1248 Uncharacterized conser 91.6 48 0.001 42.0 24.7 285 104-395 585-900 (1176)
73 PF13001 Ecm29: Proteasome sta 91.3 4.4 9.6E-05 47.4 15.4 196 120-315 267-487 (501)
74 PF05918 API5: Apoptosis inhib 91.0 16 0.00035 43.1 19.3 121 257-388 33-157 (556)
75 PF14676 FANCI_S2: FANCI solen 90.9 1.2 2.6E-05 43.9 8.7 122 228-352 37-158 (158)
76 COG5240 SEC21 Vesicle coat com 90.3 44 0.00095 39.3 36.3 340 58-437 44-399 (898)
77 KOG1820 Microtubule-associated 90.3 3.7 7.9E-05 50.5 13.8 151 242-395 249-402 (815)
78 KOG1078 Vesicle coat complex C 89.3 21 0.00045 43.2 18.3 225 185-427 221-518 (865)
79 KOG1967 DNA repair/transcripti 89.1 23 0.0005 43.6 18.6 206 143-351 788-1020(1030)
80 KOG1058 Vesicle coat complex C 89.1 62 0.0013 39.3 23.4 278 58-354 57-387 (948)
81 KOG2025 Chromosome condensatio 89.0 60 0.0013 39.1 29.2 136 250-391 130-292 (892)
82 PF05918 API5: Apoptosis inhib 88.5 60 0.0013 38.5 22.1 108 283-394 19-126 (556)
83 PF12719 Cnd3: Nuclear condens 88.5 14 0.00031 39.9 15.7 99 240-339 58-165 (298)
84 KOG0166 Karyopherin (importin) 88.5 2 4.4E-05 49.7 9.3 144 246-390 152-305 (514)
85 COG5240 SEC21 Vesicle coat com 88.2 5.9 0.00013 46.1 12.5 122 224-350 428-550 (898)
86 PF02985 HEAT: HEAT repeat; I 88.2 0.98 2.1E-05 31.7 4.2 29 365-393 1-29 (31)
87 KOG1242 Protein containing ada 88.0 64 0.0014 38.1 31.8 368 143-530 27-416 (569)
88 COG1413 FOG: HEAT repeat [Ener 87.8 4.6 0.0001 44.1 11.5 134 234-393 96-242 (335)
89 KOG0166 Karyopherin (importin) 87.0 7.1 0.00015 45.4 12.5 180 248-439 68-260 (514)
90 smart00638 LPD_N Lipoprotein N 86.5 63 0.0014 38.3 20.8 154 228-391 379-543 (574)
91 PF12765 Cohesin_HEAT: HEAT re 86.3 0.91 2E-05 34.6 3.4 40 349-388 2-42 (42)
92 PLN03200 cellulose synthase-in 86.1 1.5E+02 0.0033 40.6 37.5 164 224-394 503-681 (2102)
93 KOG1243 Protein kinase [Genera 85.3 4.6 9.9E-05 48.0 10.0 140 247-392 294-436 (690)
94 KOG2933 Uncharacterized conser 85.1 9.2 0.0002 41.5 11.4 157 232-395 111-282 (334)
95 KOG1248 Uncharacterized conser 84.9 1.3E+02 0.0027 38.5 48.0 160 86-250 269-433 (1176)
96 KOG0413 Uncharacterized conser 83.9 1.2E+02 0.0027 37.9 20.7 135 257-394 483-646 (1529)
97 KOG0211 Protein phosphatase 2A 83.1 12 0.00027 45.7 12.7 147 247-396 199-348 (759)
98 PF04826 Arm_2: Armadillo-like 82.9 32 0.00068 36.7 14.5 105 242-347 130-254 (254)
99 PF12074 DUF3554: Domain of un 82.9 35 0.00077 37.5 15.5 81 230-316 8-90 (339)
100 COG5218 YCG1 Chromosome conden 82.5 59 0.0013 38.4 16.8 72 204-275 86-161 (885)
101 KOG1078 Vesicle coat complex C 82.0 12 0.00026 45.1 11.6 138 208-354 393-531 (865)
102 PF10363 DUF2435: Protein of u 81.9 6.5 0.00014 35.2 7.5 85 251-341 8-92 (92)
103 KOG1820 Microtubule-associated 81.9 22 0.00047 44.0 14.2 145 247-395 296-445 (815)
104 KOG1061 Vesicle coat complex A 80.1 23 0.0005 42.7 13.1 185 149-347 331-520 (734)
105 COG5181 HSH155 U2 snRNP splice 80.1 44 0.00096 39.6 14.9 335 28-394 353-760 (975)
106 KOG0213 Splicing factor 3b, su 80.0 1.5E+02 0.0033 36.1 24.4 313 32-354 794-1141(1172)
107 KOG0211 Protein phosphatase 2A 78.9 58 0.0012 40.1 16.3 184 201-389 232-423 (759)
108 COG5537 IRR1 Cohesin [Cell div 78.1 4 8.7E-05 47.7 6.0 101 290-394 278-387 (740)
109 PF14500 MMS19_N: Dos2-interac 77.9 49 0.0011 35.4 13.9 159 329-528 2-166 (262)
110 PF03378 CAS_CSE1: CAS/CSE pro 77.4 54 0.0012 37.8 15.0 180 53-250 44-242 (435)
111 KOG2011 Sister chromatid cohes 77.2 20 0.00043 45.0 11.9 131 255-390 296-432 (1048)
112 PF01347 Vitellogenin_N: Lipop 76.2 16 0.00036 43.5 10.9 141 238-390 427-586 (618)
113 PF04826 Arm_2: Armadillo-like 75.9 32 0.00069 36.6 11.8 135 257-391 24-161 (254)
114 COG5181 HSH155 U2 snRNP splice 75.9 1.8E+02 0.004 34.8 20.9 233 110-355 707-947 (975)
115 COG5537 IRR1 Cohesin [Cell div 75.5 34 0.00074 40.3 12.4 137 254-395 283-427 (740)
116 PF14911 MMS22L_C: S-phase gen 74.5 1E+02 0.0022 34.8 15.6 184 75-271 139-370 (373)
117 KOG0413 Uncharacterized conser 73.4 13 0.00028 45.8 8.7 126 259-393 944-1073(1529)
118 KOG1240 Protein kinase contain 73.4 2.8E+02 0.0061 35.8 20.7 137 254-395 585-727 (1431)
119 PF13251 DUF4042: Domain of un 73.4 66 0.0014 32.6 12.7 131 261-394 1-175 (182)
120 KOG1058 Vesicle coat complex C 71.7 2.5E+02 0.0054 34.4 24.0 174 232-414 303-483 (948)
121 PF13001 Ecm29: Proteasome sta 71.5 1.1E+02 0.0024 35.9 15.9 129 236-367 360-498 (501)
122 KOG2213 Apoptosis inhibitor 5/ 70.7 1.9E+02 0.0042 32.7 20.2 232 284-554 22-277 (460)
123 PF05004 IFRD: Interferon-rela 69.8 1E+02 0.0023 33.7 14.3 150 247-396 87-260 (309)
124 PF08569 Mo25: Mo25-like; Int 68.9 2E+02 0.0042 32.1 21.0 116 221-338 176-313 (335)
125 KOG1243 Protein kinase [Genera 68.8 36 0.00078 40.8 10.9 154 239-395 361-517 (690)
126 PF12830 Nipped-B_C: Sister ch 67.6 26 0.00056 35.4 8.5 70 325-395 7-76 (187)
127 COG5064 SRP1 Karyopherin (impo 65.9 46 0.00099 36.8 10.1 103 248-356 73-187 (526)
128 PF13251 DUF4042: Domain of un 65.8 43 0.00092 33.9 9.5 98 254-354 48-173 (182)
129 KOG1240 Protein kinase contain 65.3 1E+02 0.0022 39.4 14.1 164 224-388 438-641 (1431)
130 PF12074 DUF3554: Domain of un 64.1 2.3E+02 0.005 31.1 17.5 96 240-340 160-258 (339)
131 KOG2051 Nonsense-mediated mRNA 63.9 2.1E+02 0.0045 36.3 16.2 176 221-397 473-681 (1128)
132 PF05327 RRN3: RNA polymerase 63.8 48 0.001 39.4 11.0 186 81-307 31-221 (563)
133 PF08767 CRM1_C: CRM1 C termin 61.9 2E+02 0.0044 31.6 14.8 128 148-275 42-194 (319)
134 KOG0567 HEAT repeat-containing 59.6 2.6E+02 0.0055 30.2 14.9 62 328-396 189-252 (289)
135 KOG2062 26S proteasome regulat 59.1 69 0.0015 38.8 10.7 157 249-425 490-678 (929)
136 PF00790 VHS: VHS domain; Int 58.3 72 0.0016 30.5 9.3 74 322-396 38-120 (140)
137 KOG2038 CAATT-binding transcri 57.6 4.5E+02 0.0098 32.4 17.0 61 296-358 313-373 (988)
138 KOG1992 Nuclear export recepto 57.2 4.7E+02 0.01 32.5 19.5 117 92-216 603-733 (960)
139 PF12830 Nipped-B_C: Sister ch 55.6 1.2E+02 0.0026 30.6 10.8 68 287-359 8-78 (187)
140 KOG4413 26S proteasome regulat 54.5 1.4E+02 0.0029 33.2 11.2 142 247-394 34-201 (524)
141 KOG2062 26S proteasome regulat 54.5 45 0.00098 40.3 8.3 125 258-397 567-694 (929)
142 PF08569 Mo25: Mo25-like; Int 53.6 3.6E+02 0.0077 30.0 16.6 158 224-394 60-239 (335)
143 cd03561 VHS VHS domain family; 53.5 1.2E+02 0.0027 28.7 10.0 74 322-395 33-114 (133)
144 KOG2213 Apoptosis inhibitor 5/ 53.1 3.9E+02 0.0085 30.4 27.8 268 226-531 41-334 (460)
145 PF11864 DUF3384: Domain of un 51.4 4.4E+02 0.0096 30.5 23.5 276 96-390 148-463 (464)
146 COG5116 RPN2 26S proteasome re 51.2 31 0.00067 40.4 6.1 96 296-395 525-652 (926)
147 PF12530 DUF3730: Protein of u 50.3 3.2E+02 0.0069 28.5 16.8 198 143-348 11-232 (234)
148 KOG0212 Uncharacterized conser 48.8 5.4E+02 0.012 30.7 32.0 209 168-384 84-312 (675)
149 PF14664 RICTOR_N: Rapamycin-i 48.2 2.4E+02 0.0051 31.9 12.6 110 247-359 26-141 (371)
150 PF08713 DNA_alkylation: DNA a 47.8 2.9E+02 0.0063 27.7 12.4 34 324-357 153-186 (213)
151 cd03572 ENTH_epsin_related ENT 47.4 1E+02 0.0023 29.1 8.2 30 324-353 36-65 (122)
152 COG5116 RPN2 26S proteasome re 47.3 78 0.0017 37.3 8.5 126 255-395 561-689 (926)
153 KOG2160 Armadillo/beta-catenin 46.4 4.2E+02 0.0091 29.6 13.7 137 254-393 132-282 (342)
154 PF11919 DUF3437: Domain of un 46.4 38 0.00083 30.3 4.8 56 340-396 3-61 (90)
155 KOG4224 Armadillo repeat prote 45.5 59 0.0013 36.3 7.0 137 253-393 133-280 (550)
156 PF00514 Arm: Armadillo/beta-c 45.2 37 0.0008 25.0 3.9 29 326-354 12-40 (41)
157 smart00288 VHS Domain present 45.1 1E+02 0.0022 29.3 8.0 74 322-395 33-113 (133)
158 KOG0915 Uncharacterized conser 44.9 9.2E+02 0.02 32.3 31.3 254 126-395 999-1308(1702)
159 PF10274 ParcG: Parkin co-regu 44.5 97 0.0021 31.4 7.9 81 237-317 27-110 (183)
160 cd03568 VHS_STAM VHS domain fa 44.2 1.2E+02 0.0025 29.5 8.2 74 322-395 33-112 (144)
161 PF00514 Arm: Armadillo/beta-c 43.6 35 0.00076 25.1 3.6 28 246-273 12-39 (41)
162 KOG2153 Protein involved in th 43.0 87 0.0019 37.4 8.2 87 305-391 303-390 (704)
163 KOG1241 Karyopherin (importin) 42.9 7.4E+02 0.016 30.6 27.7 130 261-391 145-286 (859)
164 PF12460 MMS19_C: RNAPII trans 42.5 5.6E+02 0.012 29.1 28.1 242 97-355 17-298 (415)
165 PF06972 DUF1296: Protein of u 41.2 39 0.00085 27.8 3.6 37 301-342 3-39 (60)
166 KOG4413 26S proteasome regulat 41.2 2.2E+02 0.0048 31.6 10.3 150 243-393 79-243 (524)
167 PF14664 RICTOR_N: Rapamycin-i 40.7 1.1E+02 0.0023 34.6 8.4 110 284-393 18-137 (371)
168 KOG2032 Uncharacterized conser 40.6 1.9E+02 0.0042 33.6 10.3 114 242-355 254-371 (533)
169 KOG1991 Nuclear transport rece 36.8 1E+03 0.022 30.4 21.3 157 187-347 391-568 (1010)
170 KOG0168 Putative ubiquitin fus 36.5 2.8E+02 0.006 34.5 11.1 171 581-753 245-436 (1051)
171 PF11865 DUF3385: Domain of un 36.2 3.9E+02 0.0085 26.2 10.7 142 237-393 5-157 (160)
172 KOG3687 Tuberin - Rap/ran-GTPa 35.4 1.1E+03 0.023 30.3 22.4 167 252-423 268-466 (1697)
173 KOG1293 Proteins containing ar 34.3 2.5E+02 0.0055 33.7 10.2 166 250-427 335-517 (678)
174 KOG3723 PH domain protein Melt 34.1 8.8E+02 0.019 29.0 17.1 46 230-276 183-228 (851)
175 PF09088 MIF4G_like: MIF4G lik 34.1 31 0.00068 35.1 2.6 70 227-298 90-159 (191)
176 PHA00657 crystallin beta/gamma 33.7 1.8E+02 0.0039 37.5 9.1 100 169-279 1915-2021(2052)
177 KOG4224 Armadillo repeat prote 33.2 4E+02 0.0088 30.1 10.9 145 246-393 208-363 (550)
178 KOG1517 Guanine nucleotide bin 33.1 4.6E+02 0.01 33.6 12.3 119 259-395 613-734 (1387)
179 KOG0392 SNF2 family DNA-depend 32.6 1.3E+02 0.0029 38.6 8.0 122 244-368 814-946 (1549)
180 cd06561 AlkD_like A new struct 32.2 1.6E+02 0.0036 29.2 7.6 75 302-384 121-195 (197)
181 PF06685 DUF1186: Protein of u 30.9 6.8E+02 0.015 26.7 14.2 112 225-349 97-211 (249)
182 cd03569 VHS_Hrs_Vps27p VHS dom 30.7 5E+02 0.011 25.0 10.5 72 323-394 38-115 (142)
183 PF14868 DUF4487: Domain of un 30.5 6.5E+02 0.014 30.1 12.9 70 322-391 475-550 (559)
184 PF11701 UNC45-central: Myosin 30.2 1.4E+02 0.0029 29.3 6.4 132 257-391 16-157 (157)
185 cd00197 VHS_ENTH_ANTH VHS, ENT 30.0 3E+02 0.0065 25.0 8.3 34 322-355 33-66 (115)
186 PF11701 UNC45-central: Myosin 29.5 1.8E+02 0.004 28.4 7.2 124 170-298 5-138 (157)
187 KOG0889 Histone acetyltransfer 29.5 3.2E+02 0.0069 39.2 11.1 157 77-251 541-719 (3550)
188 PF11935 DUF3453: Domain of un 29.0 67 0.0015 33.8 4.2 49 373-421 2-52 (239)
189 KOG2160 Armadillo/beta-catenin 28.5 3.1E+02 0.0066 30.6 9.2 142 248-394 85-241 (342)
190 PF03378 CAS_CSE1: CAS/CSE pro 27.4 1E+03 0.022 27.5 19.2 48 124-178 25-73 (435)
191 cd03561 VHS VHS domain family; 26.2 2.8E+02 0.0061 26.2 7.6 52 158-209 25-78 (133)
192 KOG1848 Uncharacterized conser 25.7 1.1E+03 0.024 31.3 14.1 155 240-394 990-1187(1610)
193 PF04928 PAP_central: Poly(A) 25.6 4.8E+02 0.01 27.9 9.9 110 15-139 40-166 (254)
194 PF08324 PUL: PUL domain; Int 25.4 4.6E+02 0.0099 27.6 9.9 97 258-354 122-230 (268)
195 PF14308 DnaJ-X: X-domain of D 25.3 3.2E+02 0.0068 28.0 8.3 35 364-398 148-188 (204)
196 PF08167 RIX1: rRNA processing 25.3 3.9E+02 0.0084 26.3 8.6 138 587-751 19-164 (165)
197 cd03572 ENTH_epsin_related ENT 25.0 2.7E+02 0.0058 26.4 6.9 85 285-394 36-120 (122)
198 cd03567 VHS_GGA VHS domain fam 24.7 3E+02 0.0064 26.6 7.4 84 309-396 24-118 (139)
199 PF12612 TFCD_C: Tubulin foldi 24.5 2.5E+02 0.0054 28.4 7.3 36 49-84 21-58 (193)
200 smart00185 ARM Armadillo/beta- 24.5 1E+02 0.0022 21.9 3.3 27 247-273 13-39 (41)
201 KOG4653 Uncharacterized conser 24.2 7E+02 0.015 31.3 11.7 139 247-391 769-916 (982)
202 KOG2022 Nuclear transport rece 24.1 1.5E+03 0.033 28.5 17.6 148 123-275 502-666 (982)
203 PF00790 VHS: VHS domain; Int 24.0 2.4E+02 0.0052 26.9 6.7 64 326-394 9-72 (140)
204 PF11698 V-ATPase_H_C: V-ATPas 23.9 1.6E+02 0.0036 27.7 5.3 27 368-394 90-116 (119)
205 PF12397 U3snoRNP10: U3 small 23.7 3.5E+02 0.0076 24.9 7.6 69 325-395 5-76 (121)
206 PF06297 PET: PET Domain; Int 23.4 1.9E+02 0.0042 26.7 5.5 62 404-477 15-92 (106)
207 KOG0946 ER-Golgi vesicle-tethe 23.1 3.3E+02 0.0072 33.6 8.7 107 286-394 121-242 (970)
208 PF03224 V-ATPase_H_N: V-ATPas 22.8 3.4E+02 0.0074 29.5 8.5 64 257-320 68-138 (312)
209 smart00185 ARM Armadillo/beta- 22.8 1.3E+02 0.0027 21.4 3.6 28 327-354 13-40 (41)
210 KOG1924 RhoA GTPase effector D 22.7 1.6E+03 0.034 28.1 19.5 89 306-394 160-264 (1102)
211 cd03568 VHS_STAM VHS domain fa 22.0 6.7E+02 0.015 24.2 9.4 70 286-355 36-110 (144)
212 PF07540 NOC3p: Nucleolar comp 21.8 1.6E+02 0.0036 26.6 4.7 34 364-397 24-58 (95)
213 KOG1077 Vesicle coat complex A 21.5 1.6E+03 0.034 27.8 19.5 222 150-388 90-393 (938)
214 KOG2032 Uncharacterized conser 21.4 1.4E+03 0.03 27.0 23.1 162 233-394 204-372 (533)
215 cd03567 VHS_GGA VHS domain fam 20.5 3.7E+02 0.008 25.9 7.1 89 167-257 37-133 (139)
216 KOG0392 SNF2 family DNA-depend 20.4 4.6E+02 0.01 34.2 9.4 120 264-388 754-878 (1549)
217 PF11707 Npa1: Ribosome 60S bi 20.4 1.2E+03 0.025 25.7 13.5 78 242-319 52-146 (330)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-112 Score=1023.65 Aligned_cols=730 Identities=33% Similarity=0.497 Sum_probs=630.0
Q ss_pred HhhhhhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHH
Q 039884 2 VENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVF 81 (757)
Q Consensus 2 ~~~~l~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF 81 (757)
++++|+.++|.+. ..+++.|++.+|++++||+|+|+|||+|||||+|||||||||||||++.||+|||
T Consensus 29 l~~~l~~~~qd~~------------~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf 96 (1266)
T KOG1525|consen 29 LANCLASLDQDNL------------DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIF 96 (1266)
T ss_pred HHHHHhhcccCch------------hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 5789999999973 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHh
Q 039884 82 ELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHII 161 (757)
Q Consensus 82 ~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI 161 (757)
++|++||.||+|+.||||.|||||||+++++|.|++|.|.+|++++.++|++||+++| ++|+.+|.+ |++||+.+|
T Consensus 97 ~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~---~~~~~~v~~-~~~i~~~li 172 (1266)
T KOG1525|consen 97 QLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLAR---KGHPKKVFN-MLDIAIMLI 172 (1266)
T ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHh---ccccHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999944444555799999999999999999 999999999 999999999
Q ss_pred hcC--CChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhc
Q 039884 162 NEE--TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQC 239 (757)
Q Consensus 162 ~E~--~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~ 239 (757)
+|. ++.++|++||.+|+++++++++.|+++|.++|..|++.+++.+++||++++....+....+..++|++|++||++
T Consensus 173 ~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~ 252 (1266)
T KOG1525|consen 173 TEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRI 252 (1266)
T ss_pred HhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence 996 567799999999999999999999999999999999999999999999999877767778888999999999999
Q ss_pred CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC
Q 039884 240 SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP 319 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 319 (757)
+|++|++|||||++||++|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||+++++|+.+||
T Consensus 253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhh
Q 039884 320 FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKC 399 (757)
Q Consensus 320 ~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~ 399 (757)
+...+..+..+++.|..|+|++||..++.+.|+++.+.+..+++ +|+.++||+||||+.||++||++|+++|+.+|..+
T Consensus 333 ~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~ 411 (1266)
T KOG1525|consen 333 SIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLR 411 (1266)
T ss_pred hhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 98888888999999999999999999999999999999999999 99999999999999999999999999999877777
Q ss_pred hcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 039884 400 CEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSLFTPLHLKALNCVLSQKK 478 (757)
Q Consensus 400 ~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~-~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~ 478 (757)
.+|+..++..|+|||++||++||.++.+ +| .+||++++++|+|+ +++++||++|+++|+++|..+.++|..|+++|.
T Consensus 412 ~~~~k~~t~~~swIp~kLL~~~y~~~~~-~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q~ 489 (1266)
T KOG1525|consen 412 SAGGKEITPPFSWIPDKLLHLYYENDLD-DR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQS 489 (1266)
T ss_pred ccCcccccccccccchhHHhhHhhcccc-HH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHHH
Confidence 8888999999999999999999999865 55 79999999999999 999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHhc--cchhHHHHHHhhhc-hhhHHHHH
Q 039884 479 RFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEM--KDNKIFNSLEELLD-NMTIKNAE 555 (757)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f~~~--~D~ri~~ll~~~~d-~~t~~~a~ 555 (757)
++|.+|+.||.++..++.++ .++++...|..++..||||+++....++|++. .+..+...+..+.- -.+|+.+.
T Consensus 490 ~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~ 566 (1266)
T KOG1525|consen 490 RLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELL 566 (1266)
T ss_pred HHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 99999999999999886543 67899999999999999999999999998765 45566665555532 12333222
Q ss_pred -HHHHHHHHHh---cCCCcHHHHHHHHHHhhh-hhcCh-hhHHHHHHhhhcCccc----------CchhhHHHHHHHHHH
Q 039884 556 -ILRDKFLKLI---GNKHPEFEFLQLLTSKCL-YIFDS-ELVCCIVNGLSSNRYA----------DKHLEDSSINLLLAI 619 (757)
Q Consensus 556 -~~~e~~~K~~---~~~~~~~~~~k~Ll~r~s-~~~n~-s~v~~ll~~~~~~~~~----------~~~~~~~a~~LL~~i 619 (757)
..++-+.+.+ .++++...+.+.+..|.. +.++. +.+..++.....+..+ .+.....+..|+..+
T Consensus 567 ~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~l 646 (1266)
T KOG1525|consen 567 ITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEAL 646 (1266)
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHh
Confidence 1233333332 334567899999999999 88887 7777777765442111 235667889999999
Q ss_pred HhhCCcCCcccHHHHHHH--Hhhcc-CCchHHHHHHHhhCCccccCc----CcHHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 039884 620 ISIFPSLLRGSEVQFQKL--LERNG-LINDKLIEVLAKAGPHISIKY----SDIYPLLERLCLEGTRAQSKHAVSAIASL 692 (757)
Q Consensus 620 S~~~P~lf~~~~~~L~~~--l~d~~-~~~~~~l~~l~k~~~~~~~~~----~~~~~~L~~~a~~Gtp~qAK~Av~~l~~~ 692 (757)
|.++|.+|......+..+ +.+.. ...+.++..+-..+..+.... ..+.+.++++++.|+|.|||+|++|+..+
T Consensus 647 s~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~ 726 (1266)
T KOG1525|consen 647 SSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAI 726 (1266)
T ss_pred hhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHH
Confidence 999999999885443333 33322 245566666655553333322 25789999999999999999999999886
Q ss_pred cCCch---hhHHHHHHHHHHhcc-CCCCCcchhHhHHHHHHhhChhhhh-hhhhhHHHHHHHhccc
Q 039884 693 SGASE---QFVFMELCKGLVDSL-HCGRNIPTVLQSLGCIAQYSVSAFE-SQSEDITRYIYENLIK 753 (757)
Q Consensus 693 ~~~~~---~~~~~~l~~~l~~~l-~~~~~l~t~L~sL~~ia~~~p~~fe-~~~~~I~~flik~vL~ 753 (757)
...+. .++|.++.+.+...+ .+.+++++++++||+|+.+.|+.|. ....++..||+|++++
T Consensus 727 ~~s~~~~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~ 792 (1266)
T KOG1525|consen 727 LQSKFCKLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLS 792 (1266)
T ss_pred hhhhhhHHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhc
Confidence 66532 234445555444433 2347999999999999999995554 5555789999999853
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=9.9e-09 Score=126.54 Aligned_cols=197 Identities=21% Similarity=0.277 Sum_probs=168.0
Q ss_pred HhhhhhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHh--hhCCCCCCCchhHHH
Q 039884 2 VENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFR--ILAPEPPFEDNYLRG 79 (757)
Q Consensus 2 ~~~~l~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~lL~hkd~~Vr~~~acCl~dIlR--i~APdaPy~d~~Lkd 79 (757)
+|..|....||++.++ ++.++++..-|+.=....|++-++.+-..-||.+++| |.+|..||+++.++.
T Consensus 444 vE~il~~~L~P~~l~~----------q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ls~~vr~~I~~~k~~~~d~~~k~ 513 (1266)
T KOG1525|consen 444 VERILAEYLVPYPLST----------QERMKHLYQLLAGLDLNAHKAFNEILKRQSRLSEEVRDYITLSKTPNTDDSMKK 513 (1266)
T ss_pred HHHHHHHhhCCCCCCH----------HHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHHHHHhccccCCCccHhHHH
Confidence 5788999999999887 8999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcchhHHH--HHHHHHHhhhhhhhhcc---CCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHH
Q 039884 80 VFELIISLFKELGNTGCPFFSKRV--KILEIVARSKCFVIMLD---IDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHML 154 (757)
Q Consensus 80 IF~l~i~~~~~L~d~~~~~f~~~~--~lLe~la~vks~vl~~D---l~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~ 154 (757)
||..|+..+..|.|+.+..+.... .+|+.++.+++++.+++ +.|.++...||+.||..++ +.++.++...|.
T Consensus 514 i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~v~~~l~e~~~---~~~s~nlF~~~~ 590 (1266)
T KOG1525|consen 514 IFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLITVKEILFELGR---KKQSKNLFSSME 590 (1266)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hccccchHHHHH
Confidence 999999999999998765444333 59999999999999999 4588888899999999998 999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhh
Q 039884 155 STMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLT 212 (757)
Q Consensus 155 ~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~ 212 (757)
.+|++.|.| ++..++.-|...+-..+......+..++..++..|+-++.+++-.-+.
T Consensus 591 ~~li~~I~~-v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls 647 (1266)
T KOG1525|consen 591 KELIERIAE-VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALS 647 (1266)
T ss_pred HHHHHHhcc-hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhh
Confidence 999999999 666666666655444444444566777777888888888777644443
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=98.70 E-value=2.4e-05 Score=93.89 Aligned_cols=392 Identities=13% Similarity=0.069 Sum_probs=214.4
Q ss_pred hhhcCCChHHHHHHHH-HHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHH
Q 039884 253 QELLVDQVDVRIKAVN-LIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAAL 331 (757)
Q Consensus 253 ~eL~sd~~~~R~~At~-llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L 331 (757)
.+|.+.+...|..|.+ +++-| +. |.+...-+++.-+.+ .-.+.++|.-+--+...+...+| +.+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~m-t~-G~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~p--elalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANM-TM-GRDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQP--EKALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHH-HC-CCCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccCh--HHHHHHHHHH
Confidence 4566777777777776 55555 32 335555555555544 44468888877667766665566 3355679999
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhh
Q 039884 332 ESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFE 411 (757)
Q Consensus 332 ~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~ 411 (757)
.+=+.|+++-||.-|+.+++.+.... +-+.++..+..-+.|+++-|||.|..+++++|+..- .....-+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--------elv~~~~ 179 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--------QLFYQQD 179 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--------ccccccc
Confidence 99999999999999999998875433 233566667777799999999999999999998531 1222335
Q ss_pred chhHHHHhhhcccccccchhhhHHHHHHhccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 039884 412 QIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVR 491 (757)
Q Consensus 412 wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~~~~~~~l~~~ 491 (757)
|+|. +..+..|.|.....+ .+ .++. ++ .+.....+. + ....+.+++...
T Consensus 180 ~~~~-L~~LL~D~dp~Vv~n-Al-~aL~-----------------eI----~~~~~~~l~-l------~~~~~~~Ll~~L 228 (746)
T PTZ00429 180 FKKD-LVELLNDNNPVVASN-AA-AIVC-----------------EV----NDYGSEKIE-S------SNEWVNRLVYHL 228 (746)
T ss_pred hHHH-HHHHhcCCCccHHHH-HH-HHHH-----------------HH----HHhCchhhH-H------HHHHHHHHHHHh
Confidence 6653 444444444322111 00 0111 11 000001110 0 011122222221
Q ss_pred HhhhCCCchHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHhccchhHHHHHHhhhchhhHHHHHHHHHHHHHHhcCCCc-
Q 039884 492 KKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHP- 570 (757)
Q Consensus 492 ~~~~~~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f~~~~D~ri~~ll~~~~d~~t~~~a~~~~e~~~K~~~~~~~- 570 (757)
.+. ++-.|- .+++-++..-|+.. ...+.+ -+.+..++...|+
T Consensus 229 ~e~----~EW~Qi---~IL~lL~~y~P~~~--------------~e~~~i----------------l~~l~~~Lq~~N~A 271 (746)
T PTZ00429 229 PEC----NEWGQL---YILELLAAQRPSDK--------------ESAETL----------------LTRVLPRMSHQNPA 271 (746)
T ss_pred hcC----ChHHHH---HHHHHHHhcCCCCc--------------HHHHHH----------------HHHHHHHhcCCCHH
Confidence 111 111222 22333333323211 011111 1222222333333
Q ss_pred -HHHHHHHHHHhhhhhcChhhHHHHHHhhhcC----cccCchhhHHHHHHHHHHHhhCCcCCcccHHHHHHHHhhccCCc
Q 039884 571 -EFEFLQLLTSKCLYIFDSELVCCIVNGLSSN----RYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLIN 645 (757)
Q Consensus 571 -~~~~~k~Ll~r~s~~~n~s~v~~ll~~~~~~----~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~d~~~~~ 645 (757)
+++.++.++.-...+ +.+.+..++..+... .+++....-.+.+-+..|...+|.+|..+.+.+--...|..-+.
T Consensus 272 VVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK 350 (746)
T PTZ00429 272 VVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVK 350 (746)
T ss_pred HHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHH
Confidence 456666555443311 344444433322110 11122334467777888999999999987555444445544345
Q ss_pred hHHHHHHHhhCCccccCcCcHHHHHHHHHhcCCcHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCCC-CcchhHhH
Q 039884 646 DKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGR-NIPTVLQS 724 (757)
Q Consensus 646 ~~~l~~l~k~~~~~~~~~~~~~~~L~~~a~~Gtp~qAK~Av~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~l~t~L~s 724 (757)
...|.++.+.+.. .+...+...|+.|+.+..+.-++-||++|+.++-+-. .....++..+.+-+..+. .....+.+
T Consensus 351 ~~KLeIL~~Lane--~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~~cV~~Ll~ll~~~~~~v~e~i~v 427 (746)
T PTZ00429 351 LEKLRLLLKLVTP--SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAPDCANLLLQIVDRRPELLPQVVTA 427 (746)
T ss_pred HHHHHHHHHHcCc--ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 5566666665543 2234678899999999888889999999987654322 233344444444333222 33346777
Q ss_pred HHHHHhhChhh
Q 039884 725 LGCIAQYSVSA 735 (757)
Q Consensus 725 L~~ia~~~p~~ 735 (757)
+-.|.+..|..
T Consensus 428 ik~IlrkyP~~ 438 (746)
T PTZ00429 428 AKDIVRKYPEL 438 (746)
T ss_pred HHHHHHHCccH
Confidence 77787777764
No 4
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.29 E-value=0.027 Score=70.35 Aligned_cols=352 Identities=17% Similarity=0.176 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHHHhh----hhcccCCCchhHHHHHHHHHHHHhh-hCCCCCCCchhHHHHHHHHHHHhhccCCCCCcch
Q 039884 25 KKLEAATKPLRKSIIK----HGLLHQNDKDIRLSVATCVSELFRI-LAPEPPFEDNYLRGVFELIISLFKELGNTGCPFF 99 (757)
Q Consensus 25 ~~~~~~l~~~~~~L~~----~~lL~hkd~~Vr~~~acCl~dIlRi-~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f 99 (757)
++-++..-.++.+..+ +++=+..+.+.|.+.---+-|+|-. +-|+=|=+..-|.-.-.+++.+++. ...+-..=
T Consensus 569 ~k~~e~a~~i~~~fl~~fL~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~-ks~~~sir 647 (1692)
T KOG1020|consen 569 TKSYEFAFRIANHFLTTFLERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSN-KSVDVSIR 647 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence 3444444444444443 3333335558999999989998864 4698888877777777888888872 21221111
Q ss_pred hHHHHHHHHHHh-h-hhhhhh-ccCCchHHHHHHHHHHHHhhhcCCCcchh---hHHHHHHHHHHHHhhc----------
Q 039884 100 SKRVKILEIVAR-S-KCFVIM-LDIDCNDLVLQMFNNFFSVVRLCSEPHLS---SLTNHMLSTMTHIINE---------- 163 (757)
Q Consensus 100 ~~~~~lLe~la~-v-ks~vl~-~Dl~~~~li~~lF~~ff~~v~~~~~~~~~---~v~~~m~~Il~~vI~E---------- 163 (757)
.-..-+|-++|. + |-.++. ++..+.+-. .+..+ ...|.. .....+.+.+...=+|
T Consensus 648 ~asLdlLG~IaarLrkd~v~s~l~~g~v~~~-------~~~~s--~~~~~~k~~~l~~~Lldfl~~~~~~~~~~~v~~~~ 718 (1692)
T KOG1020|consen 648 TASLDLLGTIAARLRKDAVLSKLEQGSVDRE-------LDQDS--EEKHNIKLIVLQKTLLDFLKSNTEETALSEVYACH 718 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhh-------hhhcc--cccccchhhhhHHHHHHHHHHhhhccchhhHHHhh
Confidence 122333333322 2 333332 000000000 00000 011111 2222223322222111
Q ss_pred -CCChhHHHHHHHHhhc--ccc------CCc-chHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCcc-------ccchH
Q 039884 164 -ETSLPLLEVVLWNLVK--QEK------DSP-YAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAV-------EGDLK 226 (757)
Q Consensus 164 -~~~~~lld~Il~~l~~--~~~------~~~-~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~-------~~~l~ 226 (757)
+..+...|+.+..... .++ +.. --...++.+.+.+-+.++. ||-+++.++... ++...
T Consensus 719 fyi~~w~~d~~le~~~~~~~~kd~~s~~~~~~~~~~el~~~~v~~~~n~~K-----~~~~~Ik~~~~~~~~~~~~s~~~d 793 (1692)
T KOG1020|consen 719 FYIAQWYRDTRLETILIMEENKDVDSNEGTHHWFSFELAYEKVITVENELK-----YILSKIKDKEKSGRGPKLNSRFAD 793 (1692)
T ss_pred HHHHhHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHHHHhhhHHHHH-----HHHHHhcchhhhccCcCCCCcccc
Confidence 1234445555544322 222 111 1234566666777777766 344555544211 11111
Q ss_pred HHHHHHHHHHhhcCchhHHhhHHhhhh---hhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhH
Q 039884 227 EFYHEIIFKIFQCSPQMLLAVIPNLIQ---ELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEV 303 (757)
Q Consensus 227 ~~~~eli~el~~~~P~lL~~ViP~l~~---eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~V 303 (757)
...-.+|+..-..+-++..+.=|+|.. -|..+...+|.+|.+.|..|...+++ .-.+|+.=.+--||++|-+.+|
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHH
Confidence 122234444334444444444444333 34567799999999999999988764 7789999999999999999999
Q ss_pred HHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC-CHHHHHHHHHHhccCChhHHH
Q 039884 304 RLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV-PEKLISEATERLRDKKISIRK 382 (757)
Q Consensus 304 R~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v-~~~ll~~l~eR~rDKk~~VR~ 382 (757)
|-+.|+....+++++|+ ...+.-+.+..|..|+---||..|++.++++..+.+... =.++...+..|+-|---.|.+
T Consensus 872 REAaldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~k 949 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKK 949 (1692)
T ss_pred HHHHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHH
Confidence 99999999999999994 577999999999999999999999999999987766532 347788888999999888999
Q ss_pred HHHHHHHHHHHHH
Q 039884 383 KALLKLLEVYREY 395 (757)
Q Consensus 383 ~A~~~L~~lY~~~ 395 (757)
-+.+.+.++|-.=
T Consensus 950 Lv~etf~klWF~p 962 (1692)
T KOG1020|consen 950 LVRETFLKLWFTP 962 (1692)
T ss_pred HHHHHHHHHhccC
Confidence 9999999999643
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=98.25 E-value=0.0034 Score=75.75 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=107.3
Q ss_pred HhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHH
Q 039884 210 FLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELF 289 (757)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w 289 (757)
+|.+++..-.+.+-.+++-.|--+....+..|++..-++..+...|.+.|+.+|-.|.+++|.+-. ..-.+.+-
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~ 142 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTL 142 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHH
Confidence 344443322223345566666666677888999988899999999999999999999999998732 23334566
Q ss_pred HHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q 039884 290 VEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSH 357 (757)
Q Consensus 290 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~ 357 (757)
....+-..|.+|-||...+=++.+++..+|+.-....+.+.|.+.|.|.|..|-..|+.++.++....
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 66667778999999999988888888888864333456778888899999999999999998886443
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.23 E-value=0.00018 Score=83.36 Aligned_cols=135 Identities=21% Similarity=0.230 Sum_probs=105.4
Q ss_pred hhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHH
Q 039884 211 LTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFV 290 (757)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~ 290 (757)
|..++.--.+.+-.+++-.|-.+..++...|+++.-++..+...|.++|+.+|-.|.+++|.+- .+ .++ +.+..
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~--~~~---~~l~~ 117 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TP--EMA---EPLIP 117 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SH--HHH---HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-cc--chh---hHHHH
Confidence 3344333233444566778888899999999988889999999999999999999999999983 22 233 45666
Q ss_pred HHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHH-HHHHHHHhhcCCChhHHHHHHHHHHHh
Q 039884 291 EFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE-ILAALESRLLDFDDRVRTEAVIVACDL 353 (757)
Q Consensus 291 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~e-i~~~L~~rL~D~DekVR~aaV~~i~~l 353 (757)
.-.+-.+|.++.||.+.+-+...+....|+. ... +.+.+.+.|.|+|..|+.+|+.+++++
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 6666677899999998888888888877753 223 788888999999999999999999887
No 7
>PRK09687 putative lyase; Provisional
Probab=98.11 E-value=3.5e-05 Score=82.76 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh-ccCCCHhHHHHHH
Q 039884 230 HEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKR-FSDKSAEVRLNAL 308 (757)
Q Consensus 230 ~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R-~~D~s~~VR~~~v 308 (757)
...+..|...-+. .+++.+..-+.++|..+|..|+..||++ +.++.... ..+.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~~----~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQD----NVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccchH----HHHHHHHHHHhcCCCHHHHHHHH
Confidence 3455555555432 2445555567899999999999999997 65443212 333333323 4899999999988
Q ss_pred HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 309 RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 309 ~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
.....+-...+. ........+...+.|.|..||.+|+.+++.+. +++.+..+...+.|..+.||..|+.+|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 877664222221 12367788889999999999999999996542 567888899999999999999999999
Q ss_pred HHH
Q 039884 389 LEV 391 (757)
Q Consensus 389 ~~l 391 (757)
|++
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.06 E-value=0.013 Score=68.08 Aligned_cols=234 Identities=19% Similarity=0.184 Sum_probs=164.5
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhh-chhhhhHHHHHHhhhhccCCCccccchHHHHHH
Q 039884 153 MLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRN-CAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHE 231 (757)
Q Consensus 153 m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~-~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~e 231 (757)
|+-+....+.+. ..+++-.+.+.|.+.-.+.++.-..+|-..+.+ +...+-+.+...+..++.+.+ ..+++.+--
T Consensus 61 l~yl~l~~~~~~-~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~---~~VRk~A~~ 136 (526)
T PF01602_consen 61 LGYLYLSLYLHE-DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPS---PYVRKKAAL 136 (526)
T ss_dssp HHHHHHHHHTTT-SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSS---HHHHHHHHH
T ss_pred HHHHHHHHHhhc-chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCc---hHHHHHHHH
Confidence 444433444433 233455555556554445556666677553433 334455555555545444332 377888889
Q ss_pred HHHHHhhcCchhHHh-hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHH
Q 039884 232 IIFKIFQCSPQMLLA-VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRC 310 (757)
Q Consensus 232 li~el~~~~P~lL~~-ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~ 310 (757)
-+..+++..|+.+.. ++|.+..-|...|..++..|+.++..+ ..++..+...-+..++...+...+.+|-+++..++.
T Consensus 137 ~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 137 ALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp HHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 999999999999988 799999999999999999999999999 433332223344555555555589999999999998
Q ss_pred hHHHHhcCCCcchH--HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 311 AKACYLGGPFRKES--REILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 311 ~~~il~~~~~~~~~--~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
...+....+ ... ..+++.+...+...+..|+.+++.++..+..... .-......+...+.++.+.||-.|+..|
T Consensus 216 l~~~~~~~~--~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 216 LRRYAPMEP--EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp HTTSTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHhcccCCh--hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 887654444 233 5789999999999999999999999987764332 3346777788888899999999999988
Q ss_pred HHHHHHH
Q 039884 389 LEVYREY 395 (757)
Q Consensus 389 ~~lY~~~ 395 (757)
..+-..+
T Consensus 292 ~~l~~~~ 298 (526)
T PF01602_consen 292 SQLAQSN 298 (526)
T ss_dssp HHHCCHC
T ss_pred HHhhccc
Confidence 8876653
No 9
>PRK09687 putative lyase; Provisional
Probab=98.05 E-value=0.00024 Score=76.33 Aligned_cols=130 Identities=22% Similarity=0.169 Sum_probs=100.8
Q ss_pred HhhHHhhhhh-hcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch
Q 039884 245 LAVIPNLIQE-LLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE 323 (757)
Q Consensus 245 ~~ViP~l~~e-L~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 323 (757)
-.++|.|..- +..++..+|..|+..+|.+- .+... .-+.....+..-..|.++.||...+.....+ .
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~---- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRC-KKNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N---- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-ccccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----
Confidence 3567777766 56678999999999999983 32211 1234556677778899999999887766432 1
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 324 SREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 324 ~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
..+.++.|...|.|+|..||..|+.++..+. .-++.....|...+.|.++.||..|+.+||++
T Consensus 157 ~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 157 DEAAIPLLINLLKDPNGDVRNWAAFALNSNK-----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 1267899999999999999999999997772 23567888888999999999999999999983
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.053 Score=66.57 Aligned_cols=478 Identities=13% Similarity=0.152 Sum_probs=254.1
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhc-CCChHHHHHHHHHHHHHhcCCCCchh-hhcHHHHHHHHh-hcc
Q 039884 221 VEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELL-VDQVDVRIKAVNLIGKICAQPDNCLA-DRYPELFVEFLK-RFS 297 (757)
Q Consensus 221 ~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~-sd~~~~R~~At~llG~mfs~~~~~~~-~~~~~~w~~fL~-R~~ 297 (757)
.+.+.++.+-+.+..+|.--| ++|.|.+-+. +.|+++|..|--++-|+++..-..+. +.-.++=+..|. =..
T Consensus 16 pDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~ 90 (1075)
T KOG2171|consen 16 PDNEVRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS 90 (1075)
T ss_pred CCchHHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 344667788889999999888 7788888887 77999999999999999875311121 122222222222 234
Q ss_pred CCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCC---HHHHHHHHHHhc
Q 039884 298 DKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVP---EKLISEATERLR 374 (757)
Q Consensus 298 D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~---~~ll~~l~eR~r 374 (757)
...+.||.+.-+.+..|-.+--.. .-.|++..|-.+.+++|+.-|..|+..+..++..--.... ++++..+.+=|-
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~ 169 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMT 169 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhcc
Confidence 667899999888877766553322 4679999999999999999999999999998853333222 488888889999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhh-hchhHHHHhhhcccccccchhhhHHHHHHhccCCCCCHHHHHH
Q 039884 375 DKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHF-EQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTR 453 (757)
Q Consensus 375 DKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~-~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~~~~~~R~~ 453 (757)
|-...||-.|.++++.+.... +++...++.| .-+|+-+ +.+- +. ++ ...+.-++
T Consensus 170 d~s~~vr~~a~rA~~a~~~~~-----~~~~~~~~~~~~llP~~l-~vl~-~~--------i~----------~~d~~~a~ 224 (1075)
T KOG2171|consen 170 DPSSPVRVAAVRALGAFAEYL-----ENNKSEVDKFRDLLPSLL-NVLQ-EV--------IQ----------DGDDDAAK 224 (1075)
T ss_pred CCcchHHHHHHHHHHHHHHHh-----ccchHHHHHHHHHhHHHH-HHhH-hh--------hh----------ccchHHHH
Confidence 999889999999999865532 1333444555 3566543 2221 00 00 01111011
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhhC--CCchHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 039884 454 HWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKG--SCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLN 531 (757)
Q Consensus 454 ~l~~l~~~ld~~~~ka~~~i~~~k~~~~~~~~~~l~~~~~~~~--~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f~ 531 (757)
.-+..+-.|=+...|-+ +..+...++++-+.-+ +-++.+....-..|-+++..-|-..| +..
T Consensus 225 ~~l~~l~El~e~~pk~l----------~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k------~~~ 288 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLL----------RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK------KLA 288 (1075)
T ss_pred HHHHHHHHHHhhchHHH----------HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh------hch
Confidence 11111111111112222 2334445555543311 12233333334445556555333222 222
Q ss_pred hccchhHHHHHHhhhchhh---HHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHhhhhhcC-hhhHHHHHHhhhcC-ccc
Q 039884 532 EMKDNKIFNSLEELLDNMT---IKNAEILRDKFLKLIGN--KHPEFEFLQLLTSKCLYIFD-SELVCCIVNGLSSN-RYA 604 (757)
Q Consensus 532 ~~~D~ri~~ll~~~~d~~t---~~~a~~~~e~~~K~~~~--~~~~~~~~k~Ll~r~s~~~n-~s~v~~ll~~~~~~-~~~ 604 (757)
..-++=+-.+++...|..+ +-|+- + +++ ...-+..-.-.+-|.|.-.+ +--.+-+++.+..- .+.
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d----~----~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~ 360 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNED----D----LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST 360 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhcccc----c----cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC
Confidence 2111212222222222111 01110 0 000 00111222223333332222 22223333333211 111
Q ss_pred CchhhHHHHHHHHHHHhhCCcCCcccHHHHHHH----HhhccC-CchHHHHHHHhhCCccc----cCcCcHHH--HHHHH
Q 039884 605 DKHLEDSSINLLLAIISIFPSLLRGSEVQFQKL----LERNGL-INDKLIEVLAKAGPHIS----IKYSDIYP--LLERL 673 (757)
Q Consensus 605 ~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~----l~d~~~-~~~~~l~~l~k~~~~~~----~~~~~~~~--~L~~~ 673 (757)
+-.....+.--|-.|+.=++.+..++...+..+ |.|..+ +.-.++..+..-..++. +.+.+..+ .+..+
T Consensus 361 ~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL 440 (1075)
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh
Confidence 223444555556677777777777776666554 355544 22333443332222222 22222222 33334
Q ss_pred HhcCCcHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh----cc-CCCC--CcchhHhHHHHHHhhChhhhhhhhhhHHHH
Q 039884 674 CLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVD----SL-HCGR--NIPTVLQSLGCIAQYSVSAFESQSEDITRY 746 (757)
Q Consensus 674 a~~Gtp~qAK~Av~~l~~~~~~~~~~~~~~l~~~l~~----~l-~~~~--~l~t~L~sL~~ia~~~p~~fe~~~~~I~~f 746 (757)
=..|+|+-=.||+.++..++..-.++++......++. .| .+++ -.-.+++++|.+|.-+-..|...-+.++.+
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL 520 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 4466766655777777644443233344444444433 23 2222 344589999999999999999999999999
Q ss_pred HHHhccc
Q 039884 747 IYENLIK 753 (757)
Q Consensus 747 lik~vL~ 753 (757)
+.+-+..
T Consensus 521 L~~~L~n 527 (1075)
T KOG2171|consen 521 LKNFLQN 527 (1075)
T ss_pred HHHHHhC
Confidence 8776543
No 11
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.85 E-value=0.0053 Score=76.35 Aligned_cols=269 Identities=15% Similarity=0.073 Sum_probs=150.6
Q ss_pred hcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccC
Q 039884 42 GLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDI 121 (757)
Q Consensus 42 ~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl 121 (757)
..|++.|.+||...+-.|.++- + .++...++.. |.|++... +..-++.|.++- -.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~----------~---~~~~~~L~~a---L~D~d~~V---R~~Aa~aL~~l~-----~~~ 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT----------P---PGFGPALVAA---LGDGAAAV---RRAAAEGLRELV-----EVL 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc----------c---hhHHHHHHHH---HcCCCHHH---HHHHHHHHHHHH-----hcc
Confidence 5678999999999999999863 1 2344444433 45664442 225555554431 112
Q ss_pred CchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchh
Q 039884 122 DCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAE 201 (757)
Q Consensus 122 ~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~ 201 (757)
+....+..++ + ++ ...|.....+.|..+-.. .. ..++..|- +..+.-+.-|..-+.....
T Consensus 684 ~~~~~L~~~L----~------~~-d~~VR~~A~~aL~~~~~~--~~---~~l~~~L~----D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 684 PPAPALRDHL----G------SP-DPVVRAAALDVLRALRAG--DA---ALFAAALG----DPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred CchHHHHHHh----c------CC-CHHHHHHHHHHHHhhccC--CH---HHHHHHhc----CCCHHHHHHHHHHHhcccC
Confidence 3333333333 1 11 225555566666554211 11 22333222 2223323333222222111
Q ss_pred hhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch
Q 039884 202 KLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL 281 (757)
Q Consensus 202 ~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~ 281 (757)
.+.+..++ .+ .+.+++..+-+-|..+..-.+.. +|.|..-+..+|..+|..|+..||.+ +.+.
T Consensus 744 --~~~l~~~l----~D---~~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~-g~~~--- 806 (897)
T PRK13800 744 --VESVAGAA----TD---ENREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAEL-GCPP--- 806 (897)
T ss_pred --cHHHHHHh----cC---CCHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhc-CCcc---
Confidence 12222222 22 22355555666666666554422 44455567777888888888888888 3221
Q ss_pred hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC
Q 039884 282 ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV 361 (757)
Q Consensus 282 ~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v 361 (757)
......+.-..|.++.||...++....+ ++ .+.++.|...|.|+|..||.+|+.++..+ ..
T Consensus 807 -----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~~ 867 (897)
T PRK13800 807 -----DDVAAATAALRASAWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLALTRW------PG 867 (897)
T ss_pred -----hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHHHhcc------CC
Confidence 1112233445677888888887776532 21 14457788888888889998888888664 23
Q ss_pred CHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 039884 362 PEKLISEATERLRDKKISIRKKALLKLLE 390 (757)
Q Consensus 362 ~~~ll~~l~eR~rDKk~~VR~~A~~~L~~ 390 (757)
++.....+...+.|....||++|...|..
T Consensus 868 ~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 868 DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 55667777788888888899888888763
No 12
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.054 Score=63.40 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHhhcCch--hHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHh
Q 039884 225 LKEFYHEIIFKIFQCSPQ--MLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAE 302 (757)
Q Consensus 225 l~~~~~eli~el~~~~P~--lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~ 302 (757)
+-+++-.++..+.+..|+ ++...+-+|=--..|.+-.+|-...+++..+...-..-=-.-|..+-...+.|..|+.|.
T Consensus 62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~ 141 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN 141 (892)
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch
Confidence 334444444444444443 333333333344557889999999999999976311000123344556789999999999
Q ss_pred HHHHHHHHhHHHHhcCCCcchHHHHHHHHHH-hhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHH
Q 039884 303 VRLNALRCAKACYLGGPFRKESREILAALES-RLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIR 381 (757)
Q Consensus 303 VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~-rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR 381 (757)
||++.|.+...+-- .| .++.-++.+.+.. --.||.+.||.+|...| .++.+++-.+.||+||=+-.+|
T Consensus 142 VRiqAv~aLsrlQ~-d~-~dee~~v~n~l~~liqnDpS~EVRRaaLsnI---------~vdnsTlp~IveRarDV~~anR 210 (892)
T KOG2025|consen 142 VRIQAVLALSRLQG-DP-KDEECPVVNLLKDLIQNDPSDEVRRAALSNI---------SVDNSTLPCIVERARDVSGANR 210 (892)
T ss_pred HHHHHHHHHHHHhc-CC-CCCcccHHHHHHHHHhcCCcHHHHHHHHHhh---------ccCcccchhHHHHhhhhhHHHH
Confidence 99999887765332 22 2333355555555 45899999999999888 5677888899999999999999
Q ss_pred HHHHHHHH
Q 039884 382 KKALLKLL 389 (757)
Q Consensus 382 ~~A~~~L~ 389 (757)
+-+-..+.
T Consensus 211 rlvY~r~l 218 (892)
T KOG2025|consen 211 RLVYERCL 218 (892)
T ss_pred HHHHHHhh
Confidence 87654443
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.83 E-value=0.16 Score=61.24 Aligned_cols=657 Identities=15% Similarity=0.147 Sum_probs=324.3
Q ss_pred hcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccC
Q 039884 42 GLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDI 121 (757)
Q Consensus 42 ~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl 121 (757)
++|.-++.+||-+..-|++=+- .--..++++.+-.=+..-. +++.+.--+.....|...++++..++- .-+
T Consensus 54 klL~D~ngEVQnlAVKClg~lv------sKvke~~le~~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~~-~~l 124 (1233)
T KOG1824|consen 54 KLLEDKNGEVQNLAVKCLGPLV------SKVKEDQLETIVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSSS-SFL 124 (1233)
T ss_pred HHHhccCcHHHHHHHHHHHHHH------hhchHHHHHHHHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCccc-ccc
Confidence 5788899999999999997554 1112356665544443221 344444444555566666665543211 001
Q ss_pred CchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCC--h----hHHHHHHHHhhccccCCcchHHHHHHHH
Q 039884 122 DCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETS--L----PLLEVVLWNLVKQEKDSPYAASQLAVSV 195 (757)
Q Consensus 122 ~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~--~----~lld~Il~~l~~~~~~~~~~a~~lA~~v 195 (757)
+..++..+-..+-+.+.+ .+....+.-..+|||..++.-..+ . .++..++-++-.+. .+-++-|.-.
T Consensus 125 -a~tV~~~~t~~l~~~i~~--qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R----~aVrKkai~~ 197 (1233)
T KOG1824|consen 125 -AATVCKRITPKLKQAISK--QEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPR----LAVRKKAITA 197 (1233)
T ss_pred -ccHHHHHHHHHHHHHhhh--cccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChH----HHHHHHHHHH
Confidence 112333333344444331 233334666678888888876422 1 24555554443321 1112222211
Q ss_pred HhhchhhhhHHHHHHhhhhccC--CCccccchHHHHHHHHHHHhhcCc----hhHHhhHHhhhhhh---cCCChHHHHHH
Q 039884 196 IRNCAEKLEPFVCGFLTSCFLD--RDAVEGDLKEFYHEIIFKIFQCSP----QMLLAVIPNLIQEL---LVDQVDVRIKA 266 (757)
Q Consensus 196 i~~~~~~l~~~i~~~~~~~~~~--~~~~~~~l~~~~~eli~el~~~~P----~lL~~ViP~l~~eL---~sd~~~~R~~A 266 (757)
+..-+-...+.+-.++.+.+.. +++....-.+.+-..|-++.+.+- +-+..++|.+.+.. ..++.+.|...
T Consensus 198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 1111112222222222222211 111111112334445555555332 23445778888887 78889999999
Q ss_pred HHHHHHHhcCCC---------------------Cchh-hhcHHHHHHHHhhc------------cCCCHhHHHHHHHHhH
Q 039884 267 VNLIGKICAQPD---------------------NCLA-DRYPELFVEFLKRF------------SDKSAEVRLNALRCAK 312 (757)
Q Consensus 267 t~llG~mfs~~~---------------------~~~~-~~~~~~w~~fL~R~------------~D~s~~VR~~~v~~~~ 312 (757)
.+.+|-.+-.-+ .|+. .+.-+.=..|+.-- .|.|=.||.+..++..
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~ 357 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLE 357 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHH
Confidence 888886654311 1111 01122222333222 3455679999999999
Q ss_pred HHHhcCCC--cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC------------------------CHHHH
Q 039884 313 ACYLGGPF--RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV------------------------PEKLI 366 (757)
Q Consensus 313 ~il~~~~~--~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v------------------------~~~ll 366 (757)
..+.++++ .+..+.+...+..|+.|-+|.|+..+..++.++-......+ ...+.
T Consensus 358 a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iV 437 (1233)
T KOG1824|consen 358 AVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIV 437 (1233)
T ss_pred HHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHH
Confidence 99988874 23355677888999999999999999999887764433211 24678
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhcc----
Q 039884 367 SEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDL---- 442 (757)
Q Consensus 367 ~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~L---- 442 (757)
+.++.-+|+|+.+-|.-|+..|..+-+.+-+... .....-+|+-+ +.+.|+.... +.-+|-+.|-+.
T Consensus 438 kai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~------~~~~slvpgI~-~~l~DkSsss--~~ki~~L~fl~~~L~s 508 (1233)
T KOG1824|consen 438 KAIQKQLREKSVKTRQGCFLLLTELINVLPGALA------QHIPSLVPGII-YSLNDKSSSS--NLKIDALVFLYSALIS 508 (1233)
T ss_pred HHHHHHHhhccccchhhHHHHHHHHHHhCcchhh------hcccccchhhh-hhcCCccchH--HHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999887643221 11233455433 3343444322 333443333221
Q ss_pred ---------CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HhhH-----hHHHHHHHHHHHH-hhhCCC-c
Q 039884 443 ---------FPV-LEVEESTRHWVHLFSLFTPLHLKALNCVLS------QKKR-----FRSEMRYYLSVRK-KEKGSC-H 499 (757)
Q Consensus 443 ---------lP~-~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~------~k~~-----~~~~~~~~l~~~~-~~~~~~-~ 499 (757)
+|. .++-. ..+...+=..+-+|+.--.. .... ....+...+.... .....| .
T Consensus 509 ~~p~~fhp~~~~Ls~~v~-----~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~D 583 (1233)
T KOG1824|consen 509 HPPEVFHPHLSALSPPVV-----AAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSD 583 (1233)
T ss_pred CChhhcccchhhhhhHHH-----HHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccccc
Confidence 111 11110 00001111111222211110 0000 0001111111111 111112 2
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchHH--HHHHHHH-hc-cchhHH---HHHHhhh----chh-h--HHHHHHHHHHHHHHh
Q 039884 500 DETHEQMKNSFVKMSASFPDPSKAE--GCFQRLN-EM-KDNKIF---NSLEELL----DNM-T--IKNAEILRDKFLKLI 565 (757)
Q Consensus 500 ~~~~~kl~~~i~~ls~~fpd~~ka~--~~l~~f~-~~-~D~ri~---~ll~~~~----d~~-t--~~~a~~~~e~~~K~~ 565 (757)
-+++.+.-.++-.+-..|.|..+.+ .+|..|. ++ |+..-. +.+..+. +.. + +......--.++|+.
T Consensus 584 qeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~ 663 (1233)
T KOG1824|consen 584 QEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKN 663 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH
Confidence 3566666677777777777766543 5666654 33 333222 2222221 111 1 122221112233331
Q ss_pred -cC-CCcHHHHHHHHHHhhhhhcChhhHHHHHHhhhcCccc-CchhhHHHHHHHHHHHhhCCcCCccc----HHHHHHHH
Q 039884 566 -GN-KHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYA-DKHLEDSSINLLLAIISIFPSLLRGS----EVQFQKLL 638 (757)
Q Consensus 566 -~~-~~~~~~~~k~Ll~r~s~~~n~s~v~~ll~~~~~~~~~-~~~~~~~a~~LL~~iS~~~P~lf~~~----~~~L~~~l 638 (757)
.. +...+.++..|+.-.+--+.++-+..++..+..-.+. +-+..+-|..+|..+....|+..-.+ .+++..++
T Consensus 664 ~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll 743 (1233)
T KOG1824|consen 664 QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLL 743 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHh
Confidence 11 2235566666666656666777777777766432222 23566789999999999999876554 22333333
Q ss_pred hhccCCchHH-------HHHHHhhCCccccCcCcHHHHHH----HHHhcCCcHHHHHH-HHHHHhh---cCCchhhHHHH
Q 039884 639 ERNGLINDKL-------IEVLAKAGPHISIKYSDIYPLLE----RLCLEGTRAQSKHA-VSAIASL---SGASEQFVFME 703 (757)
Q Consensus 639 ~d~~~~~~~~-------l~~l~k~~~~~~~~~~~~~~~L~----~~a~~Gtp~qAK~A-v~~l~~~---~~~~~~~~~~~ 703 (757)
...- +.-.+ ..++..++.. ..++-++...+. .-...|.++||-|+ ++|.|.+ ++.+.. .
T Consensus 744 ~Spl-lqg~al~~~l~~f~alV~t~~~-~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~----s 817 (1233)
T KOG1824|consen 744 RSPL-LQGGALSALLLFFQALVITKEP-DLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK----S 817 (1233)
T ss_pred hCcc-ccchHHHHHHHHHHHHHhcCCC-CccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccch----h
Confidence 3321 11122 2233333221 111111111111 12345899999888 5666655 343333 3
Q ss_pred HHHHHHhccCC-----CCCcchhHhHHHHHHhhChhh
Q 039884 704 LCKGLVDSLHC-----GRNIPTVLQSLGCIAQYSVSA 735 (757)
Q Consensus 704 l~~~l~~~l~~-----~~~l~t~L~sL~~ia~~~p~~ 735 (757)
+..++..++.. ....- .+-+||++++..+..
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvf-a~LslGElgr~~~~s 853 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVF-ALLSLGELGRRKDLS 853 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHH-HHhhhhhhccCCCCC
Confidence 34444444321 11222 356889998876543
No 14
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.71 E-value=0.32 Score=61.34 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=95.4
Q ss_pred CchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 039884 279 NCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL 358 (757)
Q Consensus 279 ~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~ 358 (757)
..|.+-|....+--|+=..--.+.||..++++...+...-|+-.-..++-.++..|++|+--.||-+||.-++...-...
T Consensus 808 r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 808 RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 35777777777777777778899999999999999988888644456888999999999999999999999955432222
Q ss_pred CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 359 KFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 359 ~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
..-...+..+++|+.|--..|||.+|+.+-.+|-.
T Consensus 888 -e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 888 -ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred -HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 23457899999999999999999999999999875
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.57 E-value=0.12 Score=60.43 Aligned_cols=143 Identities=21% Similarity=0.224 Sum_probs=100.5
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCC-CHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDK-SAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~-s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
++|.+-.-|..+|..+-..|.+++.++.+.+. .+..-+++.-..=|...... +..||.-+.+.+..+...+++....-
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 67778888999999999999999999987653 33333333335555665566 77899999999988876655422211
Q ss_pred ---HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc--cC-CCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 039884 326 ---EILAALESRLLDFDDRVRTEAVIVACDLARSH--LK-FVPEKLISEATERLRDKKISIRKKALLKLLE 390 (757)
Q Consensus 326 ---ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~--~~-~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~ 390 (757)
.+++.+.+.|.|.|--||+.|++.+.+++... .+ .....++..+...+.+-+..-|-.+|-..|.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 27788888999999999999999999999622 22 2344677777777666654444444554444
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.016 Score=67.02 Aligned_cols=163 Identities=22% Similarity=0.254 Sum_probs=116.1
Q ss_pred HHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC-CchhhhcHHHHHHHHhhccCCCHhHHHH--
Q 039884 230 HEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD-NCLADRYPELFVEFLKRFSDKSAEVRLN-- 306 (757)
Q Consensus 230 ~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~-~~~~~~~~~~w~~fL~R~~D~s~~VR~~-- 306 (757)
-+++-.+|+ -++|--++|.|.+.|.+++=.+|-.++=.+|-| +... .-|..--|.+.--++.-..||.|-||..
T Consensus 379 LDVLanvf~--~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAI-AEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 379 LDVLANVFG--DELLPILLPLLKEHLSSEEWKVREAGVLALGAI-AEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHhhH--HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHH-HHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 344444443 245556899999999999999999999999998 4422 2244555778888888999999999973
Q ss_pred HH--HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCH--HHHHHH---HHHhccCCh
Q 039884 307 AL--RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPE--KLISEA---TERLRDKKI 378 (757)
Q Consensus 307 ~v--~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~--~ll~~l---~eR~rDKk~ 378 (757)
|. ++++.++..+++ ..-..++.+|.+|++|..-+|--|||.++..+....- ++||- .+|.++ ...-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 32 566655544432 3456789999999999999999999999988775433 56652 333333 244456777
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 039884 379 SIRKKALLKLLEVYREYC 396 (757)
Q Consensus 379 ~VR~~A~~~L~~lY~~~~ 396 (757)
.|==.|+-+||.--..+.
T Consensus 535 lILYDAIgtlAdsvg~~L 552 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHAL 552 (885)
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 777888888887665544
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.35 E-value=0.0011 Score=57.56 Aligned_cols=83 Identities=25% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHhhc-cCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHH
Q 039884 292 FLKRF-SDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEAT 370 (757)
Q Consensus 292 fL~R~-~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~ 370 (757)
.+... +|.++.||...++....+ . ..+.++.|...+.|+|..||.+|+.++..+. +++.+..+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999887777622 1 3378899999999999999999999998774 456788888
Q ss_pred HHhcc-CChhHHHHHHHHHH
Q 039884 371 ERLRD-KKISIRKKALLKLL 389 (757)
Q Consensus 371 eR~rD-Kk~~VR~~A~~~L~ 389 (757)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87777 55778999999987
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.34 E-value=0.0098 Score=74.03 Aligned_cols=138 Identities=18% Similarity=0.176 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhH
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEV 303 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~V 303 (757)
+++..+-+-|.++-...|. .+.|...|.++|+.+|..|++.||.+= ... + ..++....|.++.|
T Consensus 667 ~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~~~d~~VR~~A~~aL~~~~-~~~-------~---~~l~~~L~D~d~~V 730 (897)
T PRK13800 667 AVRRAAAEGLRELVEVLPP-----APALRDHLGSPDPVVRAAALDVLRALR-AGD-------A---ALFAAALGDPDHRV 730 (897)
T ss_pred HHHHHHHHHHHHHHhccCc-----hHHHHHHhcCCCHHHHHHHHHHHHhhc-cCC-------H---HHHHHHhcCCCHHH
Confidence 4444444444554332222 234555677788889999998888862 111 1 13566677889999
Q ss_pred HHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHH
Q 039884 304 RLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKK 383 (757)
Q Consensus 304 R~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~ 383 (757)
|.++++....+ .+ .+.|...+.|+|..||.+++.++..+..... ..+..+...+.|..+.||..
T Consensus 731 R~~Av~aL~~~---~~--------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 731 RIEAVRALVSV---DD--------VESVAGAATDENREVRIAVAKGLATLGAGGA-----PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHHHHHHHhcc---cC--------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc-----hhHHHHHHHhcCCCHHHHHH
Confidence 98888877653 11 1345677889999999999888877653221 12444556678888889999
Q ss_pred HHHHHHHHHH
Q 039884 384 ALLKLLEVYR 393 (757)
Q Consensus 384 A~~~L~~lY~ 393 (757)
|+..|+++..
T Consensus 795 A~~aLg~~g~ 804 (897)
T PRK13800 795 ALAALAELGC 804 (897)
T ss_pred HHHHHHhcCC
Confidence 9999988874
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.30 E-value=0.77 Score=55.71 Aligned_cols=561 Identities=16% Similarity=0.150 Sum_probs=301.7
Q ss_pred HHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhhhhcc--CCCccccchH-HHHHHHHHHHhhcCchhHH
Q 039884 169 LLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFL--DRDAVEGDLK-EFYHEIIFKIFQCSPQMLL 245 (757)
Q Consensus 169 lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~--~~~~~~~~l~-~~~~eli~el~~~~P~lL~ 245 (757)
+++.|=.++-+..-.+.+....+-.+++..-.+-+..++-..+.+++. +..++++.++ ....-+...|..+.|+...
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 344444444322212345567777888888777777766554555432 2223334444 3455566677788888887
Q ss_pred hhHHhhhhhhcC----CChHHHHHHHHHHHHHhc-----CCC--CchhhhcHHHHHHHHhhc--cCCCHhHHHHHHHHhH
Q 039884 246 AVIPNLIQELLV----DQVDVRIKAVNLIGKICA-----QPD--NCLADRYPELFVEFLKRF--SDKSAEVRLNALRCAK 312 (757)
Q Consensus 246 ~ViP~l~~eL~s----d~~~~R~~At~llG~mfs-----~~~--~~~~~~~~~~w~~fL~R~--~D~s~~VR~~~v~~~~ 312 (757)
+-+|-+..-+.+ .=-.+--.|..+.+++.- .|+ -++.....+.+.+-++|+ +|.+-+||...+.+..
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 776666544432 112333344444444432 122 233345567888888875 7999999999999999
Q ss_pred HHHhcCCC--cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHH
Q 039884 313 ACYLGGPF--RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALL 386 (757)
Q Consensus 313 ~il~~~~~--~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~ 386 (757)
.++.+-.+ +.+-.-++..+.+|+. .|--|+.||++++.++...++ .+-.+++..+++=+|--....|.+++.
T Consensus 596 q~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~ 673 (1233)
T KOG1824|consen 596 QIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLT 673 (1233)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876443 2334456788888986 688999999999999977664 244689999999888888889999888
Q ss_pred HHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccC--CC--CCHHHHHHHH---HHHH
Q 039884 387 KLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLF--PV--LEVEESTRHW---VHLF 459 (757)
Q Consensus 387 ~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~Ll--P~--~~~~~R~~~l---~~l~ 459 (757)
.+-++-..|.... +.+.+...+..||+-|- +.|... .+..++ +..+++ |. + ..-+-..+ +.+.
T Consensus 674 a~~~L~~~~~~~~--~~~~~e~vL~el~~Lis----esdlhv-t~~a~~--~L~tl~~~~ps~l-~~~~~~iL~~ii~ll 743 (1233)
T KOG1824|consen 674 ALDKLVKNYSDSI--PAELLEAVLVELPPLIS----ESDLHV-TQLAVA--FLTTLAIIQPSSL-LKISNPILDEIIRLL 743 (1233)
T ss_pred HHHHHHHHHhccc--cHHHHHHHHHHhhhhhh----HHHHHH-HHHHHH--HHHHHHhcccHHH-HHHhhhhHHHHHHHh
Confidence 8888877763322 22233334566665432 233211 112233 222222 22 1 11110111 1111
Q ss_pred --hcCCHHHHHHHHHHHHHh-hHhH-----HHHHHHHHHHHhhhCC-----CchHHHHHHHHHHHHHHhhCCCcch--HH
Q 039884 460 --SLFTPLHLKALNCVLSQK-KRFR-----SEMRYYLSVRKKEKGS-----CHDETHEQMKNSFVKMSASFPDPSK--AE 524 (757)
Q Consensus 460 --~~ld~~~~ka~~~i~~~k-~~~~-----~~~~~~l~~~~~~~~~-----~~~~~~~kl~~~i~~ls~~fpd~~k--a~ 524 (757)
..+-. .|+...+... .-+. ..+...+.+.....-+ -....--.+.+++..|+..+|+.++ |.
T Consensus 744 ~Spllqg---~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~ 820 (1233)
T KOG1824|consen 744 RSPLLQG---GALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLAT 820 (1233)
T ss_pred hCccccc---hHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 11111 1222222211 1111 0122333332222111 1122234488889999999996554 34
Q ss_pred HHHHHHH--hccch-hHHHHHHhh-hchh-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhh-hhc-C-hhhHHHHHH
Q 039884 525 GCFQRLN--EMKDN-KIFNSLEEL-LDNM-TIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCL-YIF-D-SELVCCIVN 596 (757)
Q Consensus 525 ~~l~~f~--~~~D~-ri~~ll~~~-~d~~-t~~~a~~~~e~~~K~~~~~~~~~~~~k~Ll~r~s-~~~-n-~s~v~~ll~ 596 (757)
...+.|. +.+|. ++|-++.-= .++. ..--+......+.+-.+ +|.-|..+.=.+..+ +-. | ...++.|++
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~--sp~edvksAAs~ALGsl~vgnl~~yLpfil~ 898 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFN--SPSEDVKSAASYALGSLAVGNLPKYLPFILE 898 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcC--CChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence 4455555 44555 666655322 1211 00011111223333333 345555555555544 444 2 234677777
Q ss_pred hhhcCcccCchhhHHHHHHHHHHHhhCCcCCcccHHHHHHHHh-hccCCchHHHHHHHhhCC-ccccCcCcHHHHHHHHH
Q 039884 597 GLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLE-RNGLINDKLIEVLAKAGP-HISIKYSDIYPLLERLC 674 (757)
Q Consensus 597 ~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~-d~~~~~~~~l~~l~k~~~-~~~~~~~~~~~~L~~~a 674 (757)
.+.+.... -.---+.|...|+...+..|++.++..-.+|. +..-..+++=.+++..-+ -...+-+++.|+|+..-
T Consensus 899 qi~sqpk~---QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~ 975 (1233)
T KOG1824|consen 899 QIESQPKR---QYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLL 975 (1233)
T ss_pred HHhcchHh---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHh
Confidence 77643221 12235566788999999999999988888774 322233444334443322 22233347899999999
Q ss_pred hcCCcHHHHHHHHHHHh-hcCCch--hhHHHHHHHHHHhccCCCC--CcchhHhHHHHHHhhChhhhhhhhhhHHHHHHH
Q 039884 675 LEGTRAQSKHAVSAIAS-LSGASE--QFVFMELCKGLVDSLHCGR--NIPTVLQSLGCIAQYSVSAFESQSEDITRYIYE 749 (757)
Q Consensus 675 ~~Gtp~qAK~Av~~l~~-~~~~~~--~~~~~~l~~~l~~~l~~~~--~l~t~L~sL~~ia~~~p~~fe~~~~~I~~flik 749 (757)
..|.|..=--++.++-. ++.+.. .-++..-++.-...+.++. -=...|+++...+.+-|....+--.++...++.
T Consensus 976 ~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~ 1055 (1233)
T KOG1824|consen 976 RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYS 1055 (1233)
T ss_pred cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHH
Confidence 98888763333333311 222221 1122222222222232222 113468999999999998888877777666553
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.28 E-value=0.011 Score=59.18 Aligned_cols=94 Identities=26% Similarity=0.193 Sum_probs=83.2
Q ss_pred CHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChh
Q 039884 300 SAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKIS 379 (757)
Q Consensus 300 s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~ 379 (757)
+|.||.-++-...++....|. .....++.+..+|.|+|+.||..|+.++..+...++--+.+.++..+...+.|.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998884 455789999999999999999999999999998877666777777788888999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 039884 380 IRKKALLKLLEVYREY 395 (757)
Q Consensus 380 VR~~A~~~L~~lY~~~ 395 (757)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988874
No 21
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.096 Score=62.88 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcH
Q 039884 207 VCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYP 286 (757)
Q Consensus 207 i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~ 286 (757)
++.+|.+++..-...+-++++-.|.=+.-..+..|+.-.-.++++-..|++.|+.+|-.|.+++|.| ..+ .-
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~~-----el-- 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-RVK-----EL-- 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-ChH-----HH--
Confidence 4455666654433334467777777777778888998888999999999999999999999999887 211 11
Q ss_pred HHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHH-H
Q 039884 287 ELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEK-L 365 (757)
Q Consensus 287 ~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~-l 365 (757)
...+++.+++++.|+...||..|+-++.++-.-+.+.+++. .
T Consensus 125 -------------------------------------~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~ 167 (757)
T COG5096 125 -------------------------------------LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGL 167 (757)
T ss_pred -------------------------------------HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccH
Confidence 12334445555555555555555555555444444444444 4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 366 ISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 366 l~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
...+.+.+.|-.+.|=..|+.+|..++..
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 44444555555555555555555555543
No 22
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=1.5 Score=54.48 Aligned_cols=383 Identities=17% Similarity=0.153 Sum_probs=186.3
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCC--CC---chhhhcHHHHHHHHhhccC
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQP--DN---CLADRYPELFVEFLKRFSD 298 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~--~~---~~~~~~~~~w~~fL~R~~D 298 (757)
...+.+...+.++...+|.++..-+..+-.-|.++.-..|-..++..|.+-..- +. ...+.-++
T Consensus 290 ~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~----------- 358 (1251)
T KOG0414|consen 290 AGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD----------- 358 (1251)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-----------
Confidence 344677889999999999999999999999899999999999999999996531 10 11111111
Q ss_pred CCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC--CHHHHHHHHHHhccC
Q 039884 299 KSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV--PEKLISEATERLRDK 376 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v--~~~ll~~l~eR~rDK 376 (757)
++++.|.+|+.|.-.-||..|.+.+..+-..+-... -.++++.+..|+-||
T Consensus 359 ---------------------------~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~Dk 411 (1251)
T KOG0414|consen 359 ---------------------------ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDK 411 (1251)
T ss_pred ---------------------------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccc
Confidence 344555555555555555555555555432221111 125555555555566
Q ss_pred ChhHHHHHHHHHHHHHH------------------HHHHhhhcC-chhhhhhhhchhHHHHhhhcccccccchhhhHHHH
Q 039884 377 KISIRKKALLKLLEVYR------------------EYCKKCCEG-QMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERI 437 (757)
Q Consensus 377 k~~VR~~A~~~L~~lY~------------------~~~~~~~~~-~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~ 437 (757)
..-||+.||+.++.+-. .+....++. ++.....=+.+++- ..+..++... .++..
T Consensus 412 SslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~--~s~n~~~vi~----~~~~~ 485 (1251)
T KOG0414|consen 412 SSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSN--RSENVKGVIE----DAEKD 485 (1251)
T ss_pred cHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccch--hhhhccccee----echhh
Confidence 55566666555555443 333222211 00000000111111 0110011000 01111
Q ss_pred HHhccCCC-CCHHHHHH--HHHHHHhcCCHHH----HHHHHHHHHHhhHhHHHHHHHHHHHHhh-hCCCchHHHHHHHHH
Q 039884 438 LVEDLFPV-LEVEESTR--HWVHLFSLFTPLH----LKALNCVLSQKKRFRSEMRYYLSVRKKE-KGSCHDETHEQMKNS 509 (757)
Q Consensus 438 l~e~LlP~-~~~~~R~~--~l~~l~~~ld~~~----~ka~~~i~~~k~~~~~~~~~~l~~~~~~-~~~~~~~~~~kl~~~ 509 (757)
-+..--|. .....-.. .+..-..+.+..+ .++.-+++...-+....|.+-+...-+. -+++..+++..+...
T Consensus 486 ~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl 565 (1251)
T KOG0414|consen 486 STTEKNQLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL 565 (1251)
T ss_pred hhhhccccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 11111111 00000000 0100001111111 1222222222222222333222222211 112233444444322
Q ss_pred HHHHHhhCCCcchHHHHHHHHHhc---cchhHHHHHHhhh-------chhh-HHHHHH-HHHHHHHHhcCC-C--cHHHH
Q 039884 510 FVKMSASFPDPSKAEGCFQRLNEM---KDNKIFNSLEELL-------DNMT-IKNAEI-LRDKFLKLIGNK-H--PEFEF 574 (757)
Q Consensus 510 i~~ls~~fpd~~ka~~~l~~f~~~---~D~ri~~ll~~~~-------d~~t-~~~a~~-~~e~~~K~~~~~-~--~~~~~ 574 (757)
..|..| +-.-|+.++++...+ +|..++.++..|. |.+. -.++.. ++.++....|.. + +.+|.
T Consensus 566 --~~c~~F-~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~ 642 (1251)
T KOG0414|consen 566 --VRCKQF-GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEE 642 (1251)
T ss_pred --HHHHHh-CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHH
Confidence 234444 334578888886665 8888888887772 3222 222222 334444444542 2 34443
Q ss_pred HHHHHHhhh-hhcChhhHHHHHHhhhcCcccC-chhhHHHHHHHHHHHhhCCcCCcccHHHHHHH-HhhccCCchHHHHH
Q 039884 575 LQLLTSKCL-YIFDSELVCCIVNGLSSNRYAD-KHLEDSSINLLLAIISIFPSLLRGSEVQFQKL-LERNGLINDKLIEV 651 (757)
Q Consensus 575 ~k~Ll~r~s-~~~n~s~v~~ll~~~~~~~~~~-~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~-l~d~~~~~~~~l~~ 651 (757)
.|+.-.+ --+++..+..|.+...-...|. .....-+..+|-++|...|.+-..+.+.|..+ +.+.. ....+|+.
T Consensus 643 --vl~~lv~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg~p~-l~~~~L~~ 719 (1251)
T KOG0414|consen 643 --VLCELVARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLGEPR-LAVDVLAR 719 (1251)
T ss_pred --HHHHHHhCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccCcHH-HHHHHHHH
Confidence 3444456 7888888999998763322222 22234578899999999999999887776665 33322 34455666
Q ss_pred HHhhC
Q 039884 652 LAKAG 656 (757)
Q Consensus 652 l~k~~ 656 (757)
++..+
T Consensus 720 ~s~i~ 724 (1251)
T KOG0414|consen 720 YSNIV 724 (1251)
T ss_pred HHHhh
Confidence 65443
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.96 E-value=0.011 Score=61.16 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=106.1
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE 326 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~e 326 (757)
+++.+...+.+..-.+-..|..+++.|+..-+..|....+.+....++|..|....||....++...++.+.+. ...
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~ 130 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPK 130 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----H
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHH
Confidence 44566667777777888899999999987766667777788888999999999999999998999888876551 124
Q ss_pred H-HHHHHHhhcCCChhHHHHHHHHHHHhhhhcc---CCC-C----HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 327 I-LAALESRLLDFDDRVRTEAVIVACDLARSHL---KFV-P----EKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 327 i-~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~---~~v-~----~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+ ...+..-..+-...||..++..+..+..... ..+ . +.+.+.+..-+.|.++.||+.|-..+..+|+.+
T Consensus 131 ~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 131 ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4 7888889999999999999999877764333 111 1 568999999999999999999999999999865
No 24
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.89 Score=54.23 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=123.4
Q ss_pred HHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcH
Q 039884 207 VCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYP 286 (757)
Q Consensus 207 i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~ 286 (757)
++.||-.+..+--+...++++-.|--+..-.+-.|++=+-=|-.+.--|...|.-+|--|.+++..| ....--|
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaP 142 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI------RVPMIAP 142 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHH
Confidence 6677887776666666788887777777788888998877788999999999999999999999887 2233446
Q ss_pred HHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCH
Q 039884 287 ELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPE 363 (757)
Q Consensus 287 ~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~ 363 (757)
=...+--+-..|.+|-||....-+.+.++...|+ +..++.+.+++.|.|.+..|=-+||.+|.++...+++++.+
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHk 217 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHK 217 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhH
Confidence 6777788889999999999998889988887774 34499999999999999999999999999888777665544
No 25
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.83 E-value=0.062 Score=58.27 Aligned_cols=96 Identities=26% Similarity=0.329 Sum_probs=64.7
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc-----------c
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR-----------K 322 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-----------~ 322 (757)
-+++++..+|..|++.+|-.--. +..++.+|=.++..-+.+ | +.+||+.+++..-+++..|+.. .
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLL-DKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 56788999999999999987443 446777776666666633 5 8999999999999999987621 0
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 039884 323 ESREILAALESRLLDFDDRVRTEAVIVACDL 353 (757)
Q Consensus 323 ~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l 353 (757)
....+.+.+.+-+.+.+++||..||+.+|++
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1223444455555544555555555555444
No 26
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.83 E-value=1.3 Score=51.31 Aligned_cols=262 Identities=17% Similarity=0.168 Sum_probs=148.1
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES 333 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~ 333 (757)
-+.+.+-.+|....+.++.+----+.-=-.-|..+--...+|.-|..+.||.+.|.+.-.+-.- +.++...+.+.|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~--~~neen~~~n~l~~ 176 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM--ELNEENRIVNLLKD 176 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cCChHHHHHHHHHH
Confidence 4568899999999999998843211000123445666788999999999999998887654422 22333444444444
Q ss_pred -hhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhc
Q 039884 334 -RLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQ 412 (757)
Q Consensus 334 -rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~w 412 (757)
--.||.+.||.+|.--+ .++.+.+-.+.||.||=....|+- +|..-.+++ |+ .++..
T Consensus 177 ~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~i--Gd----~~~ls 234 (885)
T COG5218 177 IVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRI--GD----LKSLS 234 (885)
T ss_pred HHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhh--cc----hhhcc
Confidence 45899999999998877 567788889999999998888874 455444443 21 13334
Q ss_pred hhHHHHhhhc-ccccc-cchhhhHHHHHHhccCCC-CCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhhH--hHHH
Q 039884 413 IPCKILMLCY-DKDYK-EFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSLFT----PLHLKALNCVLSQKKR--FRSE 483 (757)
Q Consensus 413 IP~~il~~~y-~~d~~-~~r~~~ve~~l~e~LlP~-~~~~~R~~~l~~l~~~ld----~~~~ka~~~i~~~k~~--~~~~ 483 (757)
|-.+|+-.-+ -+|-+ ..++..+|-+....+.|. .. ++.+...+| ...++|+..++..+.- .+..
T Consensus 235 i~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~e 307 (885)
T COG5218 235 IDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKE 307 (885)
T ss_pred ccceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhh
Confidence 4444442222 12211 124556666666666554 32 222222222 1334444444443221 1111
Q ss_pred HHHH--HHHHHhhhCCCchHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHhccchhHHHHHHhhh
Q 039884 484 MRYY--LSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELL 546 (757)
Q Consensus 484 ~~~~--l~~~~~~~~~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f~~~~D~ri~~ll~~~~ 546 (757)
+-.| .++-++..=---....-=+.+.|.-+-.-||+..+..+.+..+..+.++..|+-+-.+.
T Consensus 308 FPe~~w~d~T~E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cfiI 372 (885)
T COG5218 308 FPEYLWSDPTEENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCFII 372 (885)
T ss_pred cHHHHhhCchHHHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHHHH
Confidence 2111 11110000000000011123335556666999999999999898998888776655443
No 27
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.57 Score=56.47 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=104.0
Q ss_pred hcCCChHHHHHHHH-HHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH
Q 039884 255 LLVDQVDVRIKAVN-LIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES 333 (757)
Q Consensus 255 L~sd~~~~R~~At~-llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~ 333 (757)
|.+.+...|+.|.+ ++..|.. |-++..=+|++-+.|. .+ +++++.-+=-+...+-..+| ++..-.++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~--G~dmssLf~dViK~~~--tr--d~ElKrL~ylYl~~yak~~P--~~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL--GEDMSSLFPDVIKNVA--TR--DVELKRLLYLYLERYAKLKP--ELALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--hc--CHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHh
Confidence 67778888888876 5666643 4457888888888888 33 58888877666666667788 556677999999
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 334 RLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 334 rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
=+.|+++.+|-.|...++.+.... +-+-++..+.+-+-|+++-||+.|+-+++++|+
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVKE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChHH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999998876443 456788899999999999999999999999996
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.71 E-value=0.25 Score=57.67 Aligned_cols=240 Identities=16% Similarity=0.214 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHHhhcC-------CChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchh---hhh----HHHHHHhh
Q 039884 147 SSLTNHMLSTMTHIINEE-------TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAE---KLE----PFVCGFLT 212 (757)
Q Consensus 147 ~~v~~~m~~Il~~vI~E~-------~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~---~l~----~~i~~~~~ 212 (757)
+.|....+..+..++.+. ....++..|+..+..++.. ..+.|.+++.+.+. .++ +.+..-+.
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~----Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~ 166 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLS----VAKAAIKALKKLASHPEGLEQLFDSNLLSKLK 166 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHH----HHHHHHHHHHHHhCCchhHHHHhCcchHHHHH
Confidence 366666666666666543 2345777777666655443 22333333333322 221 11122233
Q ss_pred hhccCCCccccchHHHHHHHHHHHhhcCchhHHh-----hHHhhhhhhcCCChHHHHHHHHHHHHHhcCC-CCchhhhcH
Q 039884 213 SCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLA-----VIPNLIQELLVDQVDVRIKAVNLIGKICAQP-DNCLADRYP 286 (757)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~-----ViP~l~~eL~sd~~~~R~~At~llG~mfs~~-~~~~~~~~~ 286 (757)
+.+.. .++..+-++++++.++.+..|+.+.. +++.+..+|.+||+-+|+.|++++++|-..+ +..+..+ .
T Consensus 167 ~l~~~---~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~ 242 (503)
T PF10508_consen 167 SLMSQ---SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-Q 242 (503)
T ss_pred HHHhc---cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-C
Confidence 32221 12244557999999999999988764 5689999999999999999999999996643 2333332 2
Q ss_pred HHHHHHHhhccCCC-----HhHHH-HHHHHhHHHHhcCCCc--chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-
Q 039884 287 ELFVEFLKRFSDKS-----AEVRL-NALRCAKACYLGGPFR--KESREILAALESRLLDFDDRVRTEAVIVACDLARSH- 357 (757)
Q Consensus 287 ~~w~~fL~R~~D~s-----~~VR~-~~v~~~~~il~~~~~~--~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~- 357 (757)
.++........|.+ ..+.+ .-+++...+....|.. ..-+.+++.|...+...|...|..|+.++..++...
T Consensus 243 gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 243 GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 45555555543332 22232 1224444444434421 123456667777777899999999999998887321
Q ss_pred -cCCC----C---HHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 358 -LKFV----P---EKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 358 -~~~v----~---~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
...+ + ..+++.++++.+.-+..+|..++..|+.++..
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 1111 2 37899999999999999999999999999964
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=3.8 Score=52.40 Aligned_cols=297 Identities=16% Similarity=0.179 Sum_probs=159.4
Q ss_pred HHHHHHHhhhCCCCCCCch-hHHHHHHHHHHHhhccCCCCCcchhHH-----HHHHHHHHhhhhhhhhccCCchHHHHHH
Q 039884 57 TCVSELFRILAPEPPFEDN-YLRGVFELIISLFKELGNTGCPFFSKR-----VKILEIVARSKCFVIMLDIDCNDLVLQM 130 (757)
Q Consensus 57 cCl~dIlRi~APdaPy~d~-~LkdIF~l~i~~~~~L~d~~~~~f~~~-----~~lLe~la~vks~vl~~Dl~~~~li~~l 130 (757)
.|=-|-.++ -|+-|+-.. -=.+.+..|...|-.+-+..+|.+.|. ..+...++.-+..++++ .++. +-
T Consensus 792 ~~~~ds~~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~----~eI~-~a 865 (1702)
T KOG0915|consen 792 ALGTDSNFL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLML----KEIQ-EA 865 (1702)
T ss_pred hcccchhhc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhcc----HHHH-HH
Confidence 344455555 233232211 123566667777666666667866654 23344555556666654 2443 55
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHH
Q 039884 131 FNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGF 210 (757)
Q Consensus 131 F~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~ 210 (757)
|..++. ..+++.+.|.+.=+.|.=++=++..-.++++.++..|..+.+. + ++-.++. ..
T Consensus 866 F~~~Ls----d~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~----~-------~~vs~eT------el 924 (1702)
T KOG0915|consen 866 FSHLLS----DNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRK----A-------IKVSEET------EL 924 (1702)
T ss_pred HHHHhc----ccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccc----c-------ceeccch------hc
Confidence 555554 1256666665544443333322333356999999999874332 1 1111111 01
Q ss_pred hhhhccCCCccccchHHHHHHHHHHHh-hcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHH
Q 039884 211 LTSCFLDRDAVEGDLKEFYHEIIFKIF-QCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELF 289 (757)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~eli~el~-~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w 289 (757)
|..-..+..+.+..+.. |-|+..=-. --.|+++.-.|-.=.+ +--=.-|+.|.-.+|.+.+..+..+....+.+-
T Consensus 925 Fq~G~Lg~Tp~Gg~isT-YKELc~LASdl~qPdLVYKFM~LAnh---~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLI 1000 (1702)
T KOG0915|consen 925 FQEGTLGKTPDGGKIST-YKELCNLASDLGQPDLVYKFMQLANH---NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLI 1000 (1702)
T ss_pred ccCCcCCCCCCCCcchH-HHHHHHHHhhcCChHHHHHHHHHhhh---hchhhcccchhhchHHHHHHHHHhhhhHHHHhh
Confidence 22222333333333321 333221000 1346666654421111 222345888888888887654322222222222
Q ss_pred HHHHhhccCCCHhHHHHHHHHhHHHHhcCCC---cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCH--
Q 039884 290 VEFLKRFSDKSAEVRLNALRCAKACYLGGPF---RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPE-- 363 (757)
Q Consensus 290 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~---~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~-- 363 (757)
-....=.-|.++.|+-+| ..+=+.+...+. .+...||.+-|-.-+-+-+++||.++|-++.|+-.... .-+.+
T Consensus 1001 PrLyRY~yDP~~~Vq~aM-~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l 1079 (1702)
T KOG0915|consen 1001 PRLYRYQYDPDKKVQDAM-TSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL 1079 (1702)
T ss_pred HHHhhhccCCcHHHHHHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 222233469999999998 444445554432 24567889999999999999999999999999985433 33332
Q ss_pred -HHHHHHHHHhccCChhHHHHHH
Q 039884 364 -KLISEATERLRDKKISIRKKAL 385 (757)
Q Consensus 364 -~ll~~l~eR~rDKk~~VR~~A~ 385 (757)
+++..+..=|-|=|-+||+.|=
T Consensus 1080 pelw~~~fRvmDDIKEsVR~aa~ 1102 (1702)
T KOG0915|consen 1080 PELWEAAFRVMDDIKESVREAAD 1102 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556888987653
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.59 E-value=0.015 Score=50.42 Aligned_cols=85 Identities=29% Similarity=0.324 Sum_probs=65.0
Q ss_pred HHhhhhhh-cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHH
Q 039884 248 IPNLIQEL-LVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE 326 (757)
Q Consensus 248 iP~l~~eL-~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~e 326 (757)
||.|-..| .+++..+|..|+..+|++ + .+..-..++..++|.++.||.+.+.....+= ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-~---------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-G---------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-T---------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-C---------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHH
Confidence 56777778 788999999999999955 1 2245555666668999999999988887641 236
Q ss_pred HHHHHHHhhcCCC-hhHHHHHHHHH
Q 039884 327 ILAALESRLLDFD-DRVRTEAVIVA 350 (757)
Q Consensus 327 i~~~L~~rL~D~D-ekVR~aaV~~i 350 (757)
..+.|.+.+.|++ +.||.+|+.++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 7888889888865 55699999887
No 31
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.37 E-value=2.7 Score=50.10 Aligned_cols=322 Identities=16% Similarity=0.202 Sum_probs=176.7
Q ss_pred hcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhh---------------ccCCCCCcchhHHHH--
Q 039884 42 GLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFK---------------ELGNTGCPFFSKRVK-- 104 (757)
Q Consensus 42 ~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~---------------~L~d~~~~~f~~~~~-- 104 (757)
..|+....-||..+|.|++-+.-. -.||.-++...||+.+-.-.+ -|=.-.++.|.-||.
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTre 636 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTRE 636 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHH
Confidence 345556677999999999988754 358999999998887643322 111112334555544
Q ss_pred -HHHHHHh-------hhhhh-----hhccCCc-------hHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcC
Q 039884 105 -ILEIVAR-------SKCFV-----IMLDIDC-------NDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEE 164 (757)
Q Consensus 105 -lLe~la~-------vks~v-----l~~Dl~~-------~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~ 164 (757)
+|-.+-+ -|-+| =||+-++ .|++-+.|..|..-=.+.+.-. ...+.+.-+++-.--
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~----ykqlv~ttv~ia~Kv 712 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRN----YKQLVDTTVEIAAKV 712 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccc----hhhHHHHHHHHHHHh
Confidence 4444322 22222 2455431 2577777777775311001111 111222222222222
Q ss_pred CChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhh-------------hhHHHHHHhhhhccCCCccccchHHHHHH
Q 039884 165 TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEK-------------LEPFVCGFLTSCFLDRDAVEGDLKEFYHE 231 (757)
Q Consensus 165 ~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~-------------l~~~i~~~~~~~~~~~~~~~~~l~~~~~e 231 (757)
.+.+.++-++..| ++.+++-++|+.+.+.+.-.. +-..|+..|.. .+...+-+..-+-.
T Consensus 713 G~~~~v~R~v~~l----kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqe----qtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 713 GSDPIVSRVVLDL----KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQE----QTTEDSVMLLGFGT 784 (1172)
T ss_pred CchHHHHHHhhhh----ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHh----cccchhhhhhhHHH
Confidence 3444444444333 333334445655544443221 11222222221 11111101111222
Q ss_pred HHHHH----hhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC---C---------C----CchhhhcHHHHHH
Q 039884 232 IIFKI----FQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ---P---------D----NCLADRYPELFVE 291 (757)
Q Consensus 232 li~el----~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~---~---------~----~~~~~~~~~~w~~ 291 (757)
+..++ -.+-|++.+ .+-.-|++....+|..|..++|++.-. - | -.+...||.+.-.
T Consensus 785 V~~~lg~r~kpylpqi~s----tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgs 860 (1172)
T KOG0213|consen 785 VVNALGGRVKPYLPQICS----TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGS 860 (1172)
T ss_pred HHHHHhhccccchHHHHH----HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHH
Confidence 33333 334444444 344568889999999999999987532 0 1 1345677777666
Q ss_pred HHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCH-HHHH---
Q 039884 292 FLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPE-KLIS--- 367 (757)
Q Consensus 292 fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~-~ll~--- 367 (757)
-||.. +++.+.+--+.-..-.++|+..|.--|..-.+||-...|.-+..++...++.++. +-++
T Consensus 861 ILgAi------------kaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf 928 (1172)
T KOG0213|consen 861 ILGAI------------KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF 928 (1172)
T ss_pred HHHHH------------HHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 55431 2222222101111226688888888888889999999999999999999988886 3333
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 368 EATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 368 ~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
.|.|.++--|..+|+.|.+++|-+=+.
T Consensus 929 eLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 929 ELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 345666777899999999999977664
No 32
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.59 Score=54.97 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh-----hhcHHHHHHHHhhccCCC
Q 039884 226 KEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA-----DRYPELFVEFLKRFSDKS 300 (757)
Q Consensus 226 ~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~-----~~~~~~w~~fL~R~~D~s 300 (757)
.+-.-+++|.|++ |-|..-|++.|-.+|..|..++-+.|--.+.+.. +--..-|....+=..|.-
T Consensus 164 ~qgVeeml~rL~~----------p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~ 233 (1005)
T KOG1949|consen 164 RQGVEEMLYRLYK----------PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPY 233 (1005)
T ss_pred hhhHHHHHHHHHh----------HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3446667777654 6777889999999999999999999976544432 222233455566678999
Q ss_pred HhHHHHHHHHhHH----HHhcCCCcchHHHHHHHHH-HhhcCCChhHHHHHHHHHHHhhhhccC-CCCHHHHHHHHHHhc
Q 039884 301 AEVRLNALRCAKA----CYLGGPFRKESREILAALE-SRLLDFDDRVRTEAVIVACDLARSHLK-FVPEKLISEATERLR 374 (757)
Q Consensus 301 ~~VR~~~v~~~~~----il~~~~~~~~~~ei~~~L~-~rL~D~DekVR~aaV~~i~~l~~~~~~-~v~~~ll~~l~eR~r 374 (757)
|.||...++..-. +|.--|. ....++++.+. +--+|+--.||.++++.+..++..... -+=+-+|..+..-+-
T Consensus 234 p~VRS~a~~gv~k~~s~fWe~iP~-~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~ 312 (1005)
T KOG1949|consen 234 PMVRSTAILGVCKITSKFWEMIPP-TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLH 312 (1005)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhh
Confidence 9999988765443 3444554 23445554444 356899999999999999777644332 233466778888899
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCCCCHHHHHHH
Q 039884 375 DKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRH 454 (757)
Q Consensus 375 DKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~~~~~~R~~~ 454 (757)
|+.-+||-.+..-|.++=+.-.-+ -+.=||-..+-.--+.|....-..++- .++... +|..+|...
T Consensus 313 D~se~VRvA~vd~ll~ik~vra~~----------f~~I~~~d~~l~~L~~d~~~v~rr~~~-li~~s~---lP~~k~ee~ 378 (1005)
T KOG1949|consen 313 DNSEKVRVAFVDMLLKIKAVRAAK----------FWKICPMDHILVRLETDSRPVSRRLVS-LIFNSF---LPVNKPEEV 378 (1005)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhh----------hhccccHHHHHHHHhccccHHHHHHHH-HHHHhh---cCCCCcHHH
Confidence 999999999999999887753321 112233222211122332111111222 333333 444445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHH--------HhhHhHHHHHHHHHHHHhh
Q 039884 455 WVHLFSLFTPLHLKALNCVLS--------QKKRFRSEMRYYLSVRKKE 494 (757)
Q Consensus 455 l~~l~~~ld~~~~ka~~~i~~--------~k~~~~~~~~~~l~~~~~~ 494 (757)
|...+.++=....+|..++.. .-+++-..+..|+.-|-++
T Consensus 379 ~c~Rc~tlv~~n~~A~~rf~~~l~~~~~~~~~~~~hlI~~fln~~~~~ 426 (1005)
T KOG1949|consen 379 WCERCVTLVQMNHAAARRFYQYLHEHTATNIAKLIHLIRHFLNACIQR 426 (1005)
T ss_pred HHHHHHHHHccCHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 655555443444455444443 2235556777888777654
No 33
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.17 E-value=3.1 Score=47.36 Aligned_cols=305 Identities=19% Similarity=0.250 Sum_probs=172.5
Q ss_pred chhHHHHHHHHHHHHhhhCCCCCCCch--hHHH-HHHHHHHHhhccCCCCCcchhHHHHHHHHHHhh-hhhhhhccCC-c
Q 039884 49 KDIRLSVATCVSELFRILAPEPPFEDN--YLRG-VFELIISLFKELGNTGCPFFSKRVKILEIVARS-KCFVIMLDID-C 123 (757)
Q Consensus 49 ~~Vr~~~acCl~dIlRi~APdaPy~d~--~Lkd-IF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~v-ks~vl~~Dl~-~ 123 (757)
.+.-..+.-||..++.-..-+.++.+. ...+ +...+++..-.-.+.++. ....+|+.++.+ +.++-.++.+ .
T Consensus 57 ~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~q 133 (415)
T PF12460_consen 57 SDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEKQ 133 (415)
T ss_pred hHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHHH
Confidence 333344444555555554444434432 2232 444455444333333333 445778888887 6666667775 4
Q ss_pred hHHHHHHHHHHHHh-----hhcCC---CcchhhHHHHHHHHHHHHhhcCCCh----hHHHHHHHHhhcccc-CCcchHHH
Q 039884 124 NDLVLQMFNNFFSV-----VRLCS---EPHLSSLTNHMLSTMTHIINEETSL----PLLEVVLWNLVKQEK-DSPYAASQ 190 (757)
Q Consensus 124 ~~li~~lF~~ff~~-----v~~~~---~~~~~~v~~~m~~Il~~vI~E~~~~----~lld~Il~~l~~~~~-~~~~~a~~ 190 (757)
++++.++|+.|+.. ....+ .+.+.........+++.+=-+ +.. ++++.++.-...... .....+.+
T Consensus 134 ~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 212 (415)
T PF12460_consen 134 QEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKD-VSLPDLEELLQSLLNLALSSEDEFSRLAALQ 212 (415)
T ss_pred HHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcc-cCccCHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 57899999999811 00000 113334444444444444222 222 244444433222221 11224455
Q ss_pred HHHHHHhhc--hhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHH-----hhcCchhHHhhHHhhhhhhcCCChHHH
Q 039884 191 LAVSVIRNC--AEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKI-----FQCSPQMLLAVIPNLIQELLVDQVDVR 263 (757)
Q Consensus 191 lA~~vi~~~--~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el-----~~~~P~lL~~ViP~l~~eL~sd~~~~R 263 (757)
+...++++. ++.++..+..++... .+......+....+++.-+ -+.+|.-.. .+..|-+-|.+ .++.
T Consensus 213 ~la~LvNK~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~-~~~~L~~lL~~--~~~g 286 (415)
T PF12460_consen 213 LLASLVNKWPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALVMRGHPLATE-LLDKLLELLSS--PELG 286 (415)
T ss_pred HHHHHHcCCCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHHHcCCchHHH-HHHHHHHHhCC--hhhH
Confidence 666788883 455666666666554 1111222223333333322 234444322 23333333333 7778
Q ss_pred HHHHHHHHHHhcC-CC----Cchh--------hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC---cchHHHH
Q 039884 264 IKAVNLIGKICAQ-PD----NCLA--------DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF---RKESREI 327 (757)
Q Consensus 264 ~~At~llG~mfs~-~~----~~~~--------~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~---~~~~~ei 327 (757)
..|.+.+|-+++. ++ .+.+ +-|-.+....+..+.+.+.++|..++....+++.+-|. ..+..+|
T Consensus 287 ~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~L 366 (415)
T PF12460_consen 287 QQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTL 366 (415)
T ss_pred HHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 9999999999987 31 1111 23445566678888888888999999999999998885 2345678
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCH
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPE 363 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~ 363 (757)
++.|-+.|.=+|..||.++..++..+..+....+.+
T Consensus 367 lPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 367 LPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 899999998888889999999998887766544444
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.12 E-value=0.056 Score=55.76 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhh-HHhhhhhhcCCChHHHHH
Q 039884 187 AASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAV-IPNLIQELLVDQVDVRIK 265 (757)
Q Consensus 187 ~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~V-iP~l~~eL~sd~~~~R~~ 265 (757)
.|-.+-..+....+..+++++..++...+.-......-+.+.+.+.|..+++.+| ....+ .+.+..-+.+-++.+|..
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~ 150 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREE 150 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4445556677777778888888888766532222234567789999999999999 33344 788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHH
Q 039884 266 AVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTE 345 (757)
Q Consensus 266 At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~a 345 (757)
+.+.+..++..-+. .+..+.. . ....++.+.+.+.+.|++..||.+
T Consensus 151 ~~~~l~~~l~~~~~-------------------~~~~l~~-------------~--~~~~~l~~~l~~~l~D~~~~VR~~ 196 (228)
T PF12348_consen 151 CAEWLAIILEKWGS-------------------DSSVLQK-------------S--AFLKQLVKALVKLLSDADPEVREA 196 (228)
T ss_dssp HHHHHHHHHTT------------------------GGG---------------H--HHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred HHHHHHHHHHHccc-------------------hHhhhcc-------------c--chHHHHHHHHHHHCCCCCHHHHHH
Confidence 99999999876440 0000000 0 012356677777777777777777
Q ss_pred HHHHHHHhhh
Q 039884 346 AVIVACDLAR 355 (757)
Q Consensus 346 aV~~i~~l~~ 355 (757)
|-.++..+..
T Consensus 197 Ar~~~~~l~~ 206 (228)
T PF12348_consen 197 ARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666643
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.07 E-value=0.02 Score=51.78 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=40.9
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh-hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA-DRYPELFVEFLKRFSDKSAEVRLNALRCAKACY 315 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~-~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il 315 (757)
++|.+-.-|...+..+|..|...++.|....+.... -.....+..+++-.+|.++.||..++.....+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 778888888888999999999999999765211100 011234444444444444455544444444433
No 36
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=4.4 Score=48.22 Aligned_cols=112 Identities=25% Similarity=0.250 Sum_probs=76.4
Q ss_pred CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC
Q 039884 240 SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP 319 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 319 (757)
..+++.-..-++.-.|.+.|+-.=-.|...|... +.| ++|+ ++...-+.=.+-.-|-||...|-..-.+.+.-|
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f-vTp--dLAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP 176 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI-VTP--DLAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP 176 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheecccccc-cCc--hhhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 3333333455666666666655555555555544 333 3553 445544555566679999988777666666666
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC
Q 039884 320 FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK 359 (757)
Q Consensus 320 ~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~ 359 (757)
+ --+.-.+.|.++|-|||..|--+||-+||++|..+++
T Consensus 177 e--Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 177 E--ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred H--hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 3 2446689999999999999999999999999998874
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=6.9 Score=48.85 Aligned_cols=211 Identities=21% Similarity=0.205 Sum_probs=145.3
Q ss_pred cchHHHHHHH----HHhhchhhhhHHHHHHhhhhccC--CCccccchHHHHHHHHHHHhhc-CchhHHhhHHhhhhhhcC
Q 039884 185 PYAASQLAVS----VIRNCAEKLEPFVCGFLTSCFLD--RDAVEGDLKEFYHEIIFKIFQC-SPQMLLAVIPNLIQELLV 257 (757)
Q Consensus 185 ~~~a~~lA~~----vi~~~~~~l~~~i~~~~~~~~~~--~~~~~~~l~~~~~eli~el~~~-~P~lL~~ViP~l~~eL~s 257 (757)
+|.+++||.= ++.+--..+....++-+.+-+.. .......++.+.-++|-++.+- -|+---.++|.|-+=.++
T Consensus 50 ~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S 129 (1075)
T KOG2171|consen 50 DPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKS 129 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcC
Confidence 3667776644 44443333444444333222211 0112334566677788877763 333222355567778899
Q ss_pred CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC---C-----cchHHHHHH
Q 039884 258 DQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP---F-----RKESREILA 329 (757)
Q Consensus 258 d~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~---~-----~~~~~ei~~ 329 (757)
.|++.|-.|..++.-+-..=+..+.--++++-.-|.+-++|.|..||+.-++....+..-++ + .....-++.
T Consensus 130 ~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~ 209 (1075)
T KOG2171|consen 130 PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLN 209 (1075)
T ss_pred CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHH
Confidence 99999999999988775444445555667888899999999999999999999988887664 1 122334556
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCH---HHHHHHHHHhccC--ChhHHHHHHHHHHHHHHHH
Q 039884 330 ALESRLLDFDDRVRTEAVIVACDLARSHLKFVPE---KLISEATERLRDK--KISIRKKALLKLLEVYREY 395 (757)
Q Consensus 330 ~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~---~ll~~l~eR~rDK--k~~VR~~A~~~L~~lY~~~ 395 (757)
.+.+.+-|-|+.+=..+.+++.+++...++.+.+ .+++...+=.++| ...+|..|++.+..+=..+
T Consensus 210 vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 210 VLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 6777888899999999999999999888877665 6677777777766 4789999999988776653
No 38
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.89 E-value=0.22 Score=49.79 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHH
Q 039884 229 YHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNAL 308 (757)
Q Consensus 229 ~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v 308 (757)
+--.+..|..-.|.++-..+|.+..-|..+++.+|..|...+.+++.. ++.+-.+.++..++.-..|.+++||....
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~ 84 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLAR 84 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHH
Confidence 444566677777888888888888888888888888888888888764 45566667777788888888888887776
Q ss_pred HHhHHHHhc
Q 039884 309 RCAKACYLG 317 (757)
Q Consensus 309 ~~~~~il~~ 317 (757)
.+-..+...
T Consensus 85 ~~~~e~~~~ 93 (178)
T PF12717_consen 85 SFFSELLKK 93 (178)
T ss_pred HHHHHHHHh
Confidence 666666655
No 39
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=2 Score=51.41 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=103.8
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES 333 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~ 333 (757)
-|.+.....-+.|.+-+=-|++. |-+.. .+|-+-.+-..-++++|+..+-=+...+-..+|+... ==++.+++
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~dvS----~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk 115 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKDVS----LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQK 115 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCcHH----HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHh
Confidence 56788888888888776666665 43433 5666667777888999998776666666677785322 22789999
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 334 RLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 334 rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
-|.|+..-+|..|..++.++ ....+.+=+|-++.+-.+|-.+-||+.|...+-++|+.
T Consensus 116 ~L~DpN~LiRasALRvlSsI---Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSI---RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 99999999999999999766 44466788999999999999999999999999999985
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=2.4 Score=49.51 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=146.2
Q ss_pred CChhHHHHHHHHhhccccCCcchHHHHHH-HHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhc----
Q 039884 165 TSLPLLEVVLWNLVKQEKDSPYAASQLAV-SVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQC---- 239 (757)
Q Consensus 165 ~~~~lld~Il~~l~~~~~~~~~~a~~lA~-~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~---- 239 (757)
.+.++++.+...+...+...++.+..+|- ..+..-+.-.+||+..+|..++.........+++.+.+-...+-++
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc
Confidence 34567787776666655554554444443 2455666778999999999887654334445565566666655553
Q ss_pred -CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHH--h
Q 039884 240 -SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACY--L 316 (757)
Q Consensus 240 -~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il--~ 316 (757)
++.+|-+.++.+... .=..-..+++++|-|--..+..+...-|++--.--+...|..++||-+-.++...+- .
T Consensus 251 aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 251 AVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred hhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 334555555555543 455667899999988665566788888999999999999999999998776665543 2
Q ss_pred cCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCH---HHHHHHHHH-hccCChhHHHHHHHHHHHH
Q 039884 317 GGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPE---KLISEATER-LRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 317 ~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~---~ll~~l~eR-~rDKk~~VR~~A~~~L~~l 391 (757)
.|| +.+-+++.|-+++-||..++... +..+....| +.|.+ +++--+..| ++|+....++.|....+++
T Consensus 327 dN~---dI~~~ip~Lld~l~dp~~~~~e~----~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 327 DNP---DIQKIIPTLLDALADPSCYTPEC----LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred ccH---HHHHHHHHHHHHhcCcccchHHH----HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 344 35678999999999999887643 344454444 33332 333333333 5666778888888887777
Q ss_pred HHH
Q 039884 392 YRE 394 (757)
Q Consensus 392 Y~~ 394 (757)
++.
T Consensus 400 ~~L 402 (569)
T KOG1242|consen 400 CKL 402 (569)
T ss_pred HHh
Confidence 775
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.46 E-value=0.041 Score=49.74 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC-CC--CHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK-FV--PEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-~v--~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
....+|++.+-..+.|+|.+||..||+++..+.+..-. .+ =.+++..+..++.|-...||.-| +.|-++
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 45668999999999999999999999999888753322 22 24788888999999999999887 555444
No 42
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.22 E-value=3.3 Score=44.29 Aligned_cols=233 Identities=12% Similarity=0.187 Sum_probs=149.2
Q ss_pred hcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccC
Q 039884 42 GLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDI 121 (757)
Q Consensus 42 ~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl 121 (757)
..|.+.|..+|+-.--||++++-=..|+ ..+..|+.-++.||.+-| .|.. .+...+.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl---~D~~--------~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRL---DDHA--------CVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHh---ccHh--------hHHHHHHHHHHHHhCcCC
Confidence 5788999999999999999999654444 488899999999999865 3332 222333333334444444
Q ss_pred CchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcC------CChhHHHHHHHHhhccccCCcc--hHHHHHH
Q 039884 122 DCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEE------TSLPLLEVVLWNLVKQEKDSPY--AASQLAV 193 (757)
Q Consensus 122 ~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~------~~~~lld~Il~~l~~~~~~~~~--~a~~lA~ 193 (757)
+. +....+.+.+|+-+. .+.++.+.......|+..+++.. ...+.+..++ +++.++|+... -+.++.+
T Consensus 74 ~~-~~~~~i~~~l~~~~~--~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i-~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 74 SP-ESAVKILRSLFQNVD--VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFI-QLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred Ch-hhHHHHHHHHHHhCC--hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHH-HHhccCCCHHHHHHHHHHHH
Confidence 32 346666667676544 25677788888888888888763 1234555555 46666665211 3566666
Q ss_pred HHHhhchhhhhHHHHHHhhhhccC-------CCccccch-HHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHH
Q 039884 194 SVIRNCAEKLEPFVCGFLTSCFLD-------RDAVEGDL-KEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIK 265 (757)
Q Consensus 194 ~vi~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~l-~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~ 265 (757)
.++++-. +.+....+|-.+.-+ ......++ ++....-+.+-....|..--..+|.|-++|.|+...++..
T Consensus 150 ~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 150 VILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred HHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHH
Confidence 5554443 466666666554322 11111122 1233444444445667777779999999999999999999
Q ss_pred HHHHHHHHhcCCC-CchhhhcHHHHHHH
Q 039884 266 AVNLIGKICAQPD-NCLADRYPELFVEF 292 (757)
Q Consensus 266 At~llG~mfs~~~-~~~~~~~~~~w~~f 292 (757)
+.+++..++..-+ ..+.....++|++.
T Consensus 228 ~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 228 SLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 9999999987543 33555666777754
No 43
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=1.7 Score=51.42 Aligned_cols=126 Identities=22% Similarity=0.233 Sum_probs=91.0
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhc-HHHHHHHHhhcc-----CCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 251 LIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRY-PELFVEFLKRFS-----DKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 251 l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~-~~~w~~fL~R~~-----D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
++.-|.++=+.+|..||..+.+.|+. |+.-- |.+-...|++.. |.+++||+..++..+.++.+-.++..-
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l 300 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL 300 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH
Confidence 34456778899999999999999974 55433 345667777764 678899999999999776653355556
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hcc---CCCCHHHHHHHHHHhccCChhHHH
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLAR-SHL---KFVPEKLISEATERLRDKKISIRK 382 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~~~---~~v~~~ll~~l~eR~rDKk~~VR~ 382 (757)
.+++++|.--|+|.-|+||.|+|..+..+-. ..+ +.+|.+.+-...+ -|-.+.-|.
T Consensus 301 e~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~--~d~~~v~rr 360 (1005)
T KOG1949|consen 301 EQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLE--TDSRPVSRR 360 (1005)
T ss_pred HHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHh--ccccHHHHH
Confidence 6899999999999999999999999977752 222 5677654443333 444444333
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.03 E-value=0.069 Score=48.28 Aligned_cols=100 Identities=18% Similarity=0.092 Sum_probs=73.3
Q ss_pred HHhhccCCCHhHHHHHHHHhHHHHhcCCCc--ch-HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHH
Q 039884 292 FLKRFSDKSAEVRLNALRCAKACYLGGPFR--KE-SREILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVPEK 364 (757)
Q Consensus 292 fL~R~~D~s~~VR~~~v~~~~~il~~~~~~--~~-~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ 364 (757)
++.-..|.++.+|...+.....+-...|.. .. ...+++.+.+.+.|+|++||..++.+++.++.... ..+...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 333344556788887777777655543421 11 12567888889999999999999999999985432 123445
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 365 LISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 365 ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
++..+.+.+.+.+..+|+.|+..|+.+
T Consensus 92 ~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 788899999999999999999999876
No 45
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.02 E-value=5.5 Score=47.52 Aligned_cols=127 Identities=15% Similarity=0.222 Sum_probs=79.1
Q ss_pred CchhHHhhHHhhhhhhc----CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhcc---CCCHhHHHHHHHHhH
Q 039884 240 SPQMLLAVIPNLIQELL----VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFS---DKSAEVRLNALRCAK 312 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~----sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~---D~s~~VR~~~v~~~~ 312 (757)
.+.+..-+++.+..+|. ..+...++.+.+.||.| +.| .+...++.-.. +.+..||.++++...
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GHP---------ESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CCc---------hhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45566667777777766 55779999999999999 443 33334444333 559999999999988
Q ss_pred HHHhcCCCcchHHHHHHHHHHhhcCCCh--hHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh-ccCChhHHHHHHHH
Q 039884 313 ACYLGGPFRKESREILAALESRLLDFDD--RVRTEAVIVACDLARSHLKFVPEKLISEATERL-RDKKISIRKKALLK 387 (757)
Q Consensus 313 ~il~~~~~~~~~~ei~~~L~~rL~D~De--kVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~-rDKk~~VR~~A~~~ 387 (757)
.+....|+ .+.+.|..-+.|..| .||.+|+..+-. .+ -+..+++.++..+ +|+...|+.-....
T Consensus 550 ~~~~~~~~-----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~---P~~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 550 RLAKHCPE-----KVREILLPIFMNTTEDPEVRIAAYLILMR---CN---PSPSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp TGGGT-HH-----HHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T------HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHhhcCcH-----HHHHHHHHHhcCCCCChhHHHHHHHHHHh---cC---CCHHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 76544442 445555566666544 399999988833 22 2567888888887 78888887765544
No 46
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.98 E-value=5.6 Score=53.31 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=105.9
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc---h--hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC---L--ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF 320 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~---~--~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 320 (757)
..+|.|..-|.+++..++..|..+++.+|+..... + ...-|++- .=...-+.++|.+.......+......
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV----~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI----KLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH----HHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 58999999999999999999999999999864221 1 11222322 223345667888766665555432221
Q ss_pred cc----hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc---CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 321 RK----ESREILAALESRLLDFDDRVRTEAVIVACDLARSHL---KFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 321 ~~----~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~---~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
.. .....++.|.+.|.+.|.+|+..+..++..+....= .......+..+.+-+|+....+|+.|...|.++.+
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 11 112468899999999999999999999988775321 23456778999999999999999999999999997
Q ss_pred H
Q 039884 394 E 394 (757)
Q Consensus 394 ~ 394 (757)
.
T Consensus 765 ~ 765 (2102)
T PLN03200 765 H 765 (2102)
T ss_pred C
Confidence 4
No 47
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.97 E-value=0.038 Score=38.97 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 039884 327 ILAALESRLLDFDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 327 i~~~L~~rL~D~DekVR~aaV~~i~~l~~ 355 (757)
|++.+.+.+.|++++||.+|+.++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45677888889999999999888877754
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=1.4 Score=52.18 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHH-------H----
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVE-------F---- 292 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~-------f---- 292 (757)
-+++++--++|.++--.|+-|..-+|-|-+.|..+|+.+-..||..+..+--..|.++-.--|..|+- |
T Consensus 159 YvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIK 238 (877)
T KOG1059|consen 159 YVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIK 238 (877)
T ss_pred HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHH
Confidence 45678999999999999999999999999999999999999999999999665555555555555532 2
Q ss_pred ----HhhccCCCHhHHHHHHHHhHHHHh----------------------cCCCcchHHHH-HHHHHHhhcCCChhHHHH
Q 039884 293 ----LKRFSDKSAEVRLNALRCAKACYL----------------------GGPFRKESREI-LAALESRLLDFDDRVRTE 345 (757)
Q Consensus 293 ----L~R~~D~s~~VR~~~v~~~~~il~----------------------~~~~~~~~~ei-~~~L~~rL~D~DekVR~a 345 (757)
.+...=..|..+.+.++-.-.++. -+|++...-++ +..|+.-+-|+|.+.+.-
T Consensus 239 iiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYl 318 (877)
T KOG1059|consen 239 LLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYL 318 (877)
T ss_pred HHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHH
Confidence 234444555555554432222211 13333333343 778888999999999999
Q ss_pred HHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 346 AVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 346 aV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
.+-++..+++.+++.|... ...+..-+-||..+||-.|+..|--+-+
T Consensus 319 gLlam~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 319 GLLAMSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 9999999999998776531 1122233478999999999988755544
No 49
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=11 Score=44.03 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=111.5
Q ss_pred hHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHH--H-HHhHHHHhcCC
Q 039884 243 MLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNA--L-RCAKACYLGGP 319 (757)
Q Consensus 243 lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~--v-~~~~~il~~~~ 319 (757)
.+...+|-+-.-+...|..+|-=|.+.+-.+--.-...+..-++.+|....+=+.|.+..||-.. . ...+.|.....
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 34444444444566678888988888876665433456777888999999999999999999764 1 23344443322
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hccCCC--CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH
Q 039884 320 FRKESREILAALESRLLDFDDRVRTEAVIVACDLAR-SHLKFV--PEKLISEATERLRDKKISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 320 ~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~~~~~v--~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~ 396 (757)
+.---.++++.|.+|+.+.+..+|...|.-+.-+.. ..++.+ -++++.-+..-+-|-...||..+=..|+.+-+...
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 122245899999999999999999999998866642 222222 24666677777789999999999999999888765
Q ss_pred Hh
Q 039884 397 KK 398 (757)
Q Consensus 397 ~~ 398 (757)
.+
T Consensus 241 s~ 242 (675)
T KOG0212|consen 241 SS 242 (675)
T ss_pred cC
Confidence 54
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.3 Score=56.99 Aligned_cols=127 Identities=19% Similarity=0.106 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhH
Q 039884 263 RIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRV 342 (757)
Q Consensus 263 R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekV 342 (757)
|..+....+-+ |.+++.+-..-..+|+....=++|.++.||...++..-. +++ -......+.+...+-+.|.++.|
T Consensus 175 ~~~~~~~~~~l-g~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~--L~e-g~kL~~~~Y~~A~~~lsD~~e~V 250 (823)
T KOG2259|consen 175 RLLLYCFHLPL-GVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA--LSE-GFKLSKACYSRAVKHLSDDYEDV 250 (823)
T ss_pred hHHHHHHhhhc-ccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh--hcc-cccccHHHHHHHHHHhcchHHHH
Confidence 44455444444 445555666667889987777899999999988766432 122 22345567788889999999999
Q ss_pred HHHHHHHHHHhhhhcc--C-------CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 343 RTEAVIVACDLARSHL--K-------FVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 343 R~aaV~~i~~l~~~~~--~-------~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
|.+||+.+.=++...+ . -.-+..+..+.+=+||..+.||.+|.+.||.+=.
T Consensus 251 R~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 251 RKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH
Confidence 9999999987776553 1 1235788999999999999999999999997654
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.57 E-value=0.052 Score=43.18 Aligned_cols=52 Identities=31% Similarity=0.216 Sum_probs=32.2
Q ss_pred HhHHHHHHHHhHHHHhcCCC--cchHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 039884 301 AEVRLNALRCAKACYLGGPF--RKESREILAALESRLLDFDDRVRTEAVIVACD 352 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~--~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~ 352 (757)
+.||...+.....+....+. .....++++.|...|.|+++.||.+|+.++..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45677666655543322221 22345777777777887878888887777654
No 52
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=3.2 Score=51.79 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=150.7
Q ss_pred HHHHHHHHHhh---cCc--hhHHhhHHhhhhhh----cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccC
Q 039884 228 FYHEIIFKIFQ---CSP--QMLLAVIPNLIQEL----LVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSD 298 (757)
Q Consensus 228 ~~~eli~el~~---~~P--~lL~~ViP~l~~eL----~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D 298 (757)
..++.|..+.. ..| ++|....|.++.-- ...|+.++..||-.+|+|.--. +.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC--
Confidence 45555554443 333 56666777777655 3557999999999999998663 456655555554445544
Q ss_pred CCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCh
Q 039884 299 KSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKI 378 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~ 378 (757)
.+|-||.-+|-...++...-|. .....++.|-.||+|.+..||..|+.++.-+.-.+.- --.-.+..++--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi-KVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI-KVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh-HhcccHHHHHHHhcCCcH
Confidence 3588999888888888887774 3557899999999999999999999999776533321 112334555566677777
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh-cCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCC------CCHHHH
Q 039884 379 SIRKKALLKLLEVYREYCKKCC-EGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPV------LEVEES 451 (757)
Q Consensus 379 ~VR~~A~~~L~~lY~~~~~~~~-~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~------~~~~~R 451 (757)
.||. ||+.|-. +.+ .| . ..+.-.|+-|-++- +.+.++ .+ =+.++++|+.+ ++. .|
T Consensus 1050 ~Isd-----lAk~FF~---Els~k~-n---~iynlLPdil~~Ls-~~~l~~-~~---~~~vm~~li~~ikkderf~~-~~ 1111 (1251)
T KOG0414|consen 1050 EISD-----LAKSFFK---ELSSKG-N---TIYNLLPDILSRLS-NGNLEE-ES---YKTVMEFLIGLIKKDERFSA-DR 1111 (1251)
T ss_pred HHHH-----HHHHHHH---Hhhhcc-c---chhhhchHHHHhhc-cCcccc-hh---hHHHHHHHHHHhcccccccc-cc
Confidence 7554 4442221 211 12 1 12333343222221 111111 00 01223333333 111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---hhHhHHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHHHHHhhCCCc
Q 039884 452 TRHWVHLFSLFTPLHLKALNCVLSQ---KKRFRSEMRYYLSVRKKEKGSCH---DETHEQMKNSFVKMSASFPDP 520 (757)
Q Consensus 452 ~~~l~~l~~~ld~~~~ka~~~i~~~---k~~~~~~~~~~l~~~~~~~~~~~---~~~~~kl~~~i~~ls~~fpd~ 520 (757)
+.|..--+..+++.+.|-+..++.. +-|--..+..|.+...+.++... +.+.+.....|+.+-..-+|.
T Consensus 1112 ~~rycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~v~~~f~diis~~sk~a~pe~ka~~~efe~ki~~~h~~~~~~ 1186 (1251)
T KOG0414|consen 1112 IERYCLSLLTTTERGSKKLKDLFTALAKKVQNDSVYNNFIDIISKLSKFAKPELKAVIDEFEEKIKECHSFKKDE 1186 (1251)
T ss_pred cchhhhcccccchhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHhcchhH
Confidence 2221111244555555555444442 22223467788887777665332 244556666666666655555
No 53
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.48 E-value=0.53 Score=56.95 Aligned_cols=148 Identities=20% Similarity=0.213 Sum_probs=119.5
Q ss_pred HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC-CCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC--c
Q 039884 245 LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ-PDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF--R 321 (757)
Q Consensus 245 ~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~-~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~ 321 (757)
..+.|-|.....+..-..|-.=...+...++. |...+..+.|.++--.|.-..=.++.||..-....+..+.-++. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 35667777777778888888888899999886 44445578889999999999999999999999999988877664 3
Q ss_pred chHHHHHHHHHHhhcCCC---hhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFD---DRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~D---ekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
+...-+++.+..--.|.| --||..|.+.+..+....+ ...-+++++.+.-=+-|||..||++|+.+=.+-|
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 445578888888888888 6799999999998887544 2346799999999999999999999998754433
No 54
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.83 Score=53.60 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=108.1
Q ss_pred hhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHh
Q 039884 167 LPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLA 246 (757)
Q Consensus 167 ~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ 246 (757)
+++|..+..-|-.+.-+..-.|..--..||...++.+...+. .+- |-.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~-------------~rp-------------------l~~ 174 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL-------------TRP-------------------LNI 174 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc-------------cCc-------------------hHH
Confidence 456776665555555455555666556677777766653221 111 222
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc--chH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR--KES 324 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~--~~~ 324 (757)
.||-+-.-.++..+.+|..|+..+-..+-.....+...-..--....-+.+|.+++||...-......+.-+|+. .--
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl 254 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL 254 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch
Confidence 455555567788999999999999988765544443322222334445679999999999877777777777752 113
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLARSH 357 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~ 357 (757)
..|++++-.|-.|+||.|-++||+-...+|...
T Consensus 255 ~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 255 DNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 478999999999999999999999887777544
No 55
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.26 E-value=0.42 Score=42.84 Aligned_cols=88 Identities=23% Similarity=0.212 Sum_probs=72.2
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC-CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHH
Q 039884 286 PELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP-FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEK 364 (757)
Q Consensus 286 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~-~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ 364 (757)
..+|+.+++-.+|..++||..-+....+.+.++. .......++..+..-|.|+|.=|=+.||++++.++... |.+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~----p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH----PDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC----hHH
Confidence 3688999999999999999999888888887766 43445678999999999999999999999999998655 456
Q ss_pred HHHHHHHHhccCC
Q 039884 365 LISEATERLRDKK 377 (757)
Q Consensus 365 ll~~l~eR~rDKk 377 (757)
++..+.++-.|++
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 6777766655553
No 56
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.20 E-value=0.043 Score=43.65 Aligned_cols=52 Identities=25% Similarity=0.191 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHhhhhcc---CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 340 DRVRTEAVIVACDLARSHL---KFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 340 ekVR~aaV~~i~~l~~~~~---~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
+.||.+|+.++..++.... ...-++++..+...++|.+..||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4799999999987664333 234568999999999999999999999999875
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=19 Score=43.65 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=138.6
Q ss_pred HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 245 LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 245 ~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
.-+.-.|...|++.|--+==+|...+|.|++. .++ |++.-+--+-.+-.++-||.+.+-|+-.++..-|+. .
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~---Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~ 177 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--V 177 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--H
Confidence 33455777899999988889999999999764 334 233333333333467999999999999999988853 5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCch
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQM 404 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~ 404 (757)
+-.+....++|.|-|..|=.+++.-+.++....+ +.+... || ....|-.+-+
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~-----~~l~~f----r~--------l~~~lV~iLk----------- 229 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP-----DALSYF----RD--------LVPSLVKILK----------- 229 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH-----HHHHHH----HH--------HHHHHHHHHH-----------
Confidence 5778899999999999999999888877655432 111111 11 1111111111
Q ss_pred hhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHH
Q 039884 405 TVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEM 484 (757)
Q Consensus 405 ~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~~~~ 484 (757)
.+...=|.+.-+. ...-| |++ .-|.-|++.+++.-|+++...+..++.+-.+
T Consensus 230 -----------~l~~~~yspeydv--~gi~d--------PFL--Qi~iLrlLriLGq~d~daSd~M~DiLaqvat----- 281 (866)
T KOG1062|consen 230 -----------QLTNSGYSPEYDV--HGISD--------PFL--QIRILRLLRILGQNDADASDLMNDILAQVAT----- 281 (866)
T ss_pred -----------HHhcCCCCCccCc--cCCCc--------hHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh-----
Confidence 1111111111000 00011 111 1455778888998899988888888774321
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHHHHHhhCCCcc---hHHHHHHHHHhccchhHHH
Q 039884 485 RYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPS---KAEGCFQRLNEMKDNKIFN 540 (757)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~kl~~~i~~ls~~fpd~~---ka~~~l~~f~~~~D~ri~~ 540 (757)
+ ++. ......+-|-.+++.|...-|++. .|-..|-||-.-+|+++-+
T Consensus 282 -n----tds----skN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 282 -N----TDS----SKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred -c----ccc----cccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceee
Confidence 0 111 111234567778888888888875 5777888888888887643
No 58
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.86 E-value=0.38 Score=56.38 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=79.4
Q ss_pred HHHhhccCCCHhHHHHHHHHhHHHHhcCC-C-------cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC-
Q 039884 291 EFLKRFSDKSAEVRLNALRCAKACYLGGP-F-------RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV- 361 (757)
Q Consensus 291 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~-~-------~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v- 361 (757)
.|..=..--+-..|..+++.+.+++..-- + .....++++.|.+||.|+-.-+|..|.+++..+-.-..+.+
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~ 382 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG 382 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence 34444455677889999999998875311 1 11245789999999999999999999988866654333333
Q ss_pred -CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 362 -PEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 362 -~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
..++.+.++.|+-||...||+.|++.++++--.
T Consensus 383 ~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999987643
No 59
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.79 E-value=0.67 Score=52.67 Aligned_cols=118 Identities=19% Similarity=0.077 Sum_probs=78.7
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHH
Q 039884 248 IPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREI 327 (757)
Q Consensus 248 iP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei 327 (757)
+..|-.-|...++.+|..|.+-||.+ ..+ ..-..-+.-..|.++.||...+..... . .. +-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-~~~---------~a~~~L~~~L~~~~p~vR~aal~al~~-r--~~------~~ 148 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL-GGR---------QAEPWLEPLLAASEPPGRAIGLAALGA-H--RH------DP 148 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC-Cch---------HHHHHHHHHhcCCChHHHHHHHHHHHh-h--cc------Ch
Confidence 44455566677888999999999976 221 122223334478889999888744443 1 11 12
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
.+.+..-|.|.|..||.+|+.+++.+... +.+..+..-+.|.++.||..|+.+|+.+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 34566667799999999999999877532 2223344448899999999999999665
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=22 Score=43.11 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=78.0
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES 333 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~ 333 (757)
-|.+.|-.+|-.|...|++.... +.+.+++|+.+--+ ...|.+++||...+|..-.++..+- ...+++.|.+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~-d~~avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~ 392 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQ-DPTAVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN----VRVMVKELLE 392 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcC-CcHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHH
Confidence 34444444444444444444433 34688999988755 5579999999999999876554322 3456666666
Q ss_pred hhcCCChhHHHHHHHHHHHhh-hhccC---CC--CHHHHHHHHHHhccCChh
Q 039884 334 RLLDFDDRVRTEAVIVACDLA-RSHLK---FV--PEKLISEATERLRDKKIS 379 (757)
Q Consensus 334 rL~D~DekVR~aaV~~i~~l~-~~~~~---~v--~~~ll~~l~eR~rDKk~~ 379 (757)
-|.-.|+.+|..-+..|+.++ ++.++ ++ =-.+++..|.-++|+.+.
T Consensus 393 fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~ 444 (866)
T KOG1062|consen 393 FLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN 444 (866)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH
Confidence 666679999999888998888 45552 12 236777777777777543
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=0.78 Score=54.66 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=117.3
Q ss_pred HHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhh
Q 039884 205 PFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADR 284 (757)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~ 284 (757)
.-++..|++++......+-++++-.|.=+.--.+.-|++=.-.++.+-..-..+++.+|..|.++.|.+ ..+ ..
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l-~v~-----~i 118 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL-RVD-----KI 118 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE-eeh-----HH
Confidence 456667888776544444566776666666667788888888899999999999999999999999987 222 22
Q ss_pred cHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC
Q 039884 285 YPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK 359 (757)
Q Consensus 285 ~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~ 359 (757)
-.-++..-++-.+|.++.||...+-++.....-+++.....-+++.|..-+.|.|..|=..|+.++.++...+.+
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 234677888889999999999988888877776776555557899999999999999999999999999877653
No 62
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.46 E-value=3.8 Score=48.53 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcC----chhHHhhHHhhhhhhc----CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCC
Q 039884 229 YHEIIFKIFQCS----PQMLLAVIPNLIQELL----VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKS 300 (757)
Q Consensus 229 ~~eli~el~~~~----P~lL~~ViP~l~~eL~----sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s 300 (757)
+..+++..+.-. +.++..++|.+..+|. ..+...+..+.+.||.| +.|..- ....-++..-.+.+
T Consensus 421 ~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~-g~~~~i------~~l~~~l~~~~~~~ 493 (574)
T smart00638 421 YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA-GHPSSI------KVLEPYLEGAEPLS 493 (574)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc-CChhHH------HHHHHhcCCCCCCC
Confidence 444555544433 4566778888888775 35778899999999999 655321 23444454445678
Q ss_pred HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc-cCChh
Q 039884 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLR-DKKIS 379 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~r-DKk~~ 379 (757)
+.||.++|.....+...+|.. ...-+.+.+..+- .+..||.+|+.++-+ ..+ +...++.+++.+. |+...
T Consensus 494 ~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n~~--e~~EvRiaA~~~lm~---t~P---~~~~l~~ia~~l~~E~~~Q 564 (574)
T smart00638 494 TFIRLAAILALRNLAKRDPRK-VQEVLLPIYLNRA--EPPEVRMAAVLVLME---TKP---SVALLQRIAELLNKEPNLQ 564 (574)
T ss_pred HHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcCCC--CChHHHHHHHHHHHh---cCC---CHHHHHHHHHHHhhcCcHH
Confidence 889999999998776666631 1212333333322 344599999999833 222 4467777776654 55566
Q ss_pred HHHHHHH
Q 039884 380 IRKKALL 386 (757)
Q Consensus 380 VR~~A~~ 386 (757)
|+.-...
T Consensus 565 V~sfv~S 571 (574)
T smart00638 565 VASFVYS 571 (574)
T ss_pred HHHHhHH
Confidence 7655443
No 63
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.02 E-value=0.41 Score=43.29 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC--cchHHHHHHHHHHhhcCCCh
Q 039884 263 RIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF--RKESREILAALESRLLDFDD 340 (757)
Q Consensus 263 R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~~~~~ei~~~L~~rL~D~De 340 (757)
|..+.-.++..--.=+.......+.+-.--|.-|.|.++.||....++.-++...... ...-.+|.++|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 4444444544421213335666777888889999999999999988888887765442 12356899999999999999
Q ss_pred hHHHHHHH
Q 039884 341 RVRTEAVI 348 (757)
Q Consensus 341 kVR~aaV~ 348 (757)
.||.+|..
T Consensus 83 ~Vr~~a~~ 90 (97)
T PF12755_consen 83 NVRSAAEL 90 (97)
T ss_pred hHHHHHHH
Confidence 99999843
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.99 E-value=1 Score=51.13 Aligned_cols=124 Identities=21% Similarity=0.053 Sum_probs=86.4
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHH
Q 039884 249 PNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREIL 328 (757)
Q Consensus 249 P~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~ 328 (757)
+.|..-|.++++.+|..++..+|..-..+ + .....+|+ |.++.||...+.....+- .+ +..
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~~~-------~-~~L~~~L~---d~d~~Vra~A~raLG~l~--~~------~a~ 180 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRHDP-------G-PALEAALT---HEDALVRAAALRALGELP--RR------LSE 180 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccCh-------H-HHHHHHhc---CCCHHHHHHHHHHHHhhc--cc------cch
Confidence 45566678999999999999999842211 1 24455554 999999999988886532 12 334
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhhhc-----------cC-------------CCCHHHHHHHHHHhccCChhHHHHH
Q 039884 329 AALESRLLDFDDRVRTEAVIVACDLARSH-----------LK-------------FVPEKLISEATERLRDKKISIRKKA 384 (757)
Q Consensus 329 ~~L~~rL~D~DekVR~aaV~~i~~l~~~~-----------~~-------------~v~~~ll~~l~eR~rDKk~~VR~~A 384 (757)
..|..-+.|.|+.||.+|+.+...+.... .. .-+++.+..+.+.++|.. ||..+
T Consensus 181 ~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a 258 (410)
T TIGR02270 181 STLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREA 258 (410)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHH
Confidence 55667799999999999998875553210 00 113467777777888855 99999
Q ss_pred HHHHHHHHH
Q 039884 385 LLKLLEVYR 393 (757)
Q Consensus 385 ~~~L~~lY~ 393 (757)
+..||++=.
T Consensus 259 ~~AlG~lg~ 267 (410)
T TIGR02270 259 LRAVGLVGD 267 (410)
T ss_pred HHHHHHcCC
Confidence 999997643
No 65
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.26 Score=57.57 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=110.8
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC------------C-----ch-----hhhcHHH-------H-------
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD------------N-----CL-----ADRYPEL-------F------- 289 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~------------~-----~~-----~~~~~~~-------w------- 289 (757)
.+..++..-++.-...+|..|.+.+|.|=...+ + .+ ...|.+- |
T Consensus 281 ~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpse 360 (823)
T KOG2259|consen 281 AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSE 360 (823)
T ss_pred HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchh
Confidence 456666777777778889999999998854221 0 01 1223333 4
Q ss_pred ---------------HHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 290 ---------------VEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 290 ---------------~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
.+|.--+.|-=-+||.+.|...-....+.|+- +..-++.|-+.++|-.+.||+.|+.++.-++
T Consensus 361 e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 361 EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 66777788888899999998888878888854 5577899999999999999999999998888
Q ss_pred hhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 355 RSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 355 ~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
.. -.+.++.+..+.+=+.|..+.||...-+.|+..
T Consensus 439 ~~--l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 439 VH--LAIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HH--heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 76 357899999999999999999999887777653
No 66
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=92.70 E-value=1.8 Score=47.41 Aligned_cols=120 Identities=23% Similarity=0.207 Sum_probs=79.4
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE 326 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~e 326 (757)
.++.+..-|.+++..+|..|+..+|.+ +. ......+.....|.++.||-.++... ..-.+. +
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~----~~------~~av~~l~~~l~d~~~~vr~~a~~aL----g~~~~~----~ 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGEL----GS------EEAVPLLRELLSDEDPRVRDAAADAL----GELGDP----E 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhh----ch------HHHHHHHHHHhcCCCHHHHHHHHHHH----HccCCh----h
Confidence 566677778888999999999998887 22 24566777888899999999988733 222221 3
Q ss_pred HHHHHHHhhc-CCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCC------------hhHHHHHHHHHHHH
Q 039884 327 ILAALESRLL-DFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKK------------ISIRKKALLKLLEV 391 (757)
Q Consensus 327 i~~~L~~rL~-D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk------------~~VR~~A~~~L~~l 391 (757)
-+..|.+.+. |.+..||..+..++..+.... .+..+.+-+.|+. ..||..++..|+.+
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~ 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc
Confidence 3444444444 899999999999997765332 1333333333333 25777777777754
No 67
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=0.27 Score=60.75 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=76.2
Q ss_pred HHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCHHHHHHH
Q 039884 291 EFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPEKLISEA 369 (757)
Q Consensus 291 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~~ll~~l 369 (757)
.|.-|++|+.|.||+.|++.....+.+-|+.-...--++++.=.|+|-...||+.+++++..+-..+- ...=....+-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 68899999999999999999987777777533333568889999999999999999999988875421 11001112222
Q ss_pred HHH-----hccCChhHHHHHHHHHHHHHH
Q 039884 370 TER-----LRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 370 ~eR-----~rDKk~~VR~~A~~~L~~lY~ 393 (757)
.+| .||-...||..++..+-..+.
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~ 399 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSS 399 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence 222 489999999999988776653
No 68
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.24 E-value=23 Score=39.76 Aligned_cols=322 Identities=12% Similarity=0.114 Sum_probs=176.5
Q ss_pred ccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhh----cc---CCC-CCcchhHHHHHHHHHHhhhhh
Q 039884 44 LHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFK----EL---GNT-GCPFFSKRVKILEIVARSKCF 115 (757)
Q Consensus 44 L~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~----~L---~d~-~~~~f~~~~~lLe~la~vks~ 115 (757)
|...|++=|.-+-..|...||.|--.+ . ...+.+=+.+|.+.+. .- ++| ++..+.|-.-+|-.+-.-..+
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~-~-~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i 79 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLP-D-RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI 79 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCC-c-HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH
Confidence 345566666666666999999985332 2 2444455555554443 21 122 334566666666666555444
Q ss_pred hhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcC-----CChhHHHHHHHH---hhccccCCc--
Q 039884 116 VIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEE-----TSLPLLEVVLWN---LVKQEKDSP-- 185 (757)
Q Consensus 116 vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~-----~~~~lld~Il~~---l~~~~~~~~-- 185 (757)
+-.++-| ...-+......... .+..++.+...-+.++.. +. .+....+.++.. +-++-++.+
T Consensus 80 ~~~l~~d---~~~~~i~~~i~~l~--~~~~~K~i~~~~l~~ls~---Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~ 151 (372)
T PF12231_consen 80 VSTLSDD---FASFIIDHSIESLQ--NPNSPKSICTHYLWCLSD---QKFSPKIMTSDRVERLLAALHNIKNRFPSKSII 151 (372)
T ss_pred HhhCChH---HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHc---CCCCCcccchhhHHHHHHHHHHhhccCCchhHH
Confidence 4444432 12222222223221 155666666555554432 21 122334444433 222222222
Q ss_pred chHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCc-hh-HHh-hHHhhhhhhcCCChHH
Q 039884 186 YAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSP-QM-LLA-VIPNLIQELLVDQVDV 262 (757)
Q Consensus 186 ~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P-~l-L~~-ViP~l~~eL~sd~~~~ 262 (757)
..+-..=+.++.+....|...+..+|-.++.+--....++...+..+..++-.+.+ +- +.. +...+...+..+ ..
T Consensus 152 ~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~ 229 (372)
T PF12231_consen 152 SERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KL 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cH
Confidence 23344447788888888888887777766533223344555567777777655443 22 222 333333333333 66
Q ss_pred HHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhH
Q 039884 263 RIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRV 342 (757)
Q Consensus 263 R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekV 342 (757)
-..-++.+.+|+..++. ...=|++|..+.+=..+.- +. ..+...+.+.-.+.++..+|..|
T Consensus 230 ~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~--------------~~---~w~~~n~wL~v~e~cFn~~d~~~ 290 (372)
T PF12231_consen 230 IQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSR--------------LD---SWEHLNEWLKVPEKCFNSSDPQV 290 (372)
T ss_pred HHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCch--------------hh---ccHhHhHHHHHHHHHhcCCCHHH
Confidence 77888889999988532 2334788988765543321 11 11335577888889999999999
Q ss_pred HHHHHHHHHHhhhh-cc-CCCCHHHHHHHH--------HHhccCCh-hHHHHHHHHHHHHHHHHH
Q 039884 343 RTEAVIVACDLARS-HL-KFVPEKLISEAT--------ERLRDKKI-SIRKKALLKLLEVYREYC 396 (757)
Q Consensus 343 R~aaV~~i~~l~~~-~~-~~v~~~ll~~l~--------eR~rDKk~-~VR~~A~~~L~~lY~~~~ 396 (757)
|.+|..+=..+... .. ...++..++.+. .+.-+|.. .+|..++.+++.++-..+
T Consensus 291 k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~f 355 (372)
T PF12231_consen 291 KIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYAF 355 (372)
T ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHHh
Confidence 99999887666542 11 233455554443 22333322 889999999998764443
No 69
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.21 E-value=1.9 Score=50.95 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC--CCCchhhhcHHHHHHHH----hhccCCC
Q 039884 227 EFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ--PDNCLADRYPELFVEFL----KRFSDKS 300 (757)
Q Consensus 227 ~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~--~~~~~~~~~~~~w~~fL----~R~~D~s 300 (757)
+...-.+..|....|.+.+--+-++..-|.++.-..|--.++..|.+-.. ++......||...+..+ .|+.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 45677888999999999999999999999999999999999999988653 23356777777777655 5999999
Q ss_pred HhHHHHHHHHhHHHHhcCC-CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 039884 301 AEVRLNALRCAKACYLGGP-FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL 358 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~-~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~ 358 (757)
|-+|.+.++-+..|.--+. ......+++.....||.|----||..||+.++.+-..++
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999998887664332 123355899999999999999999999999999875444
No 70
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.83 E-value=0.23 Score=37.83 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHH
Q 039884 313 ACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIV 349 (757)
Q Consensus 313 ~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~ 349 (757)
.++...|.....+++.+.+..|+.|++..||.+||..
T Consensus 5 ~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 5 SIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444455444455788888888888888888888765
No 71
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.63 E-value=7.5 Score=44.32 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=108.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhc
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLL 336 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~ 336 (757)
+++...|..|.+.+++|+..++..|...---+-..+|.-..|-..+|=....+.|-..+.+|.-. .-+.-+..++.
T Consensus 341 ~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----~~I~~i~~~Il 416 (516)
T KOG2956|consen 341 SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----QCIVNISPLIL 416 (516)
T ss_pred chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch----hHHHHHhhHHh
Confidence 47899999999999999998877777766677889999999999988777778887777665421 23455667777
Q ss_pred CCChhHHHHHHHHHHHhh----hhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhc
Q 039884 337 DFDDRVRTEAVIVACDLA----RSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQ 412 (757)
Q Consensus 337 D~DekVR~aaV~~i~~l~----~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~w 412 (757)
-.||..=.++++....+- .+.+..+=+++.=.+.+=.---...|||.|+=+|-.+|+.. |.++....+..
T Consensus 417 t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v------G~~~mePhL~~ 490 (516)
T KOG2956|consen 417 TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV------GMEEMEPHLEQ 490 (516)
T ss_pred cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH------hHHhhhhHhhh
Confidence 789998888887765553 33332222333333444444556789999999999999974 33344456666
Q ss_pred hhHHHHhh
Q 039884 413 IPCKILML 420 (757)
Q Consensus 413 IP~~il~~ 420 (757)
.++.-+++
T Consensus 491 Lt~sk~~L 498 (516)
T KOG2956|consen 491 LTSSKLNL 498 (516)
T ss_pred ccHHHHHH
Confidence 66654444
No 72
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=48 Score=42.00 Aligned_cols=285 Identities=16% Similarity=0.085 Sum_probs=157.4
Q ss_pred HHHHHHHhhhhhhhhccCC--chHHHHHHHHHHHHhhhcCCCcchhhH----HHHHHHHHHHHhhcC--CChhHHHHHHH
Q 039884 104 KILEIVARSKCFVIMLDID--CNDLVLQMFNNFFSVVRLCSEPHLSSL----TNHMLSTMTHIINEE--TSLPLLEVVLW 175 (757)
Q Consensus 104 ~lLe~la~vks~vl~~Dl~--~~~li~~lF~~ff~~v~~~~~~~~~~v----~~~m~~Il~~vI~E~--~~~~lld~Il~ 175 (757)
|+|+....+=-.+...++. ..++..+++...-+.++ ++...+ ....+|++..+..=. .+..=+..+..
T Consensus 585 ~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as----~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~ 660 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELAS----DLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDP 660 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhc----cchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhH
Confidence 4555544443233322332 44666677766655543 222223 333444444443211 11122334554
Q ss_pred Hhhcc-ccCCcchHHHHHHHHHhhchhhhhHHHHHHh----hhhccCCCccccchHHHHHHHHHHHhhcCc----hhHHh
Q 039884 176 NLVKQ-EKDSPYAASQLAVSVIRNCAEKLEPFVCGFL----TSCFLDRDAVEGDLKEFYHEIIFKIFQCSP----QMLLA 246 (757)
Q Consensus 176 ~l~~~-~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~----~~~~~~~~~~~~~l~~~~~eli~el~~~~P----~lL~~ 246 (757)
.+.+. .++...-+|++-.+++.. ...+.++.+.. |.+.-..++...-.+..+...+.-|++..| +++..
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k 738 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK 738 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44443 233445688888888877 22233333333 322212222222233345556777777777 56666
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCC-CCchhhhc-HHHHHHHHhhc-----cCCCHhHHHHHHHHhHHHHhc--
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQP-DNCLADRY-PELFVEFLKRF-----SDKSAEVRLNALRCAKACYLG-- 317 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~-~~~~~~~~-~~~w~~fL~R~-----~D~s~~VR~~~v~~~~~il~~-- 317 (757)
.||.+---++-.|+..|.-|-++|--|-+.. ..++...- ++.-++|+.-. +| +.-++..=+-....++..
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHh
Confidence 6666655567788999999999887665210 11112111 45566665443 23 233333312222223321
Q ss_pred -CCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 318 -GPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 318 -~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
.-+...-..+++.++-.|.-.-..||.+||..+.-+...-+. .--+++|.++...+.|+|..||+..-..|=++-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 223344558889999999999999999999988665544442 223579999999999999999998877777766
Q ss_pred HHH
Q 039884 393 REY 395 (757)
Q Consensus 393 ~~~ 395 (757)
+.+
T Consensus 898 rkf 900 (1176)
T KOG1248|consen 898 RKF 900 (1176)
T ss_pred HHh
Confidence 655
No 73
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=91.27 E-value=4.4 Score=47.35 Aligned_cols=196 Identities=15% Similarity=0.220 Sum_probs=124.6
Q ss_pred cCCchHHHHHHHHHHH--Hhhhc-CCCcchhhHHHHHHHHHHHHhhcC-CChhHHHHHHHHhhcccc--CCcchHHHHH-
Q 039884 120 DIDCNDLVLQMFNNFF--SVVRL-CSEPHLSSLTNHMLSTMTHIINEE-TSLPLLEVVLWNLVKQEK--DSPYAASQLA- 192 (757)
Q Consensus 120 Dl~~~~li~~lF~~ff--~~v~~-~~~~~~~~v~~~m~~Il~~vI~E~-~~~~lld~Il~~l~~~~~--~~~~~a~~lA- 192 (757)
+++..+++..||..|+ .+-.. .-+.-+..+...++.+|+.=+.-. ....++.+++..|-..+. .....+-+..
T Consensus 267 ~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~ 346 (501)
T PF13001_consen 267 SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIR 346 (501)
T ss_pred CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhh
Confidence 4666789999999999 32110 002233466666666666543332 345688888888876532 2223344555
Q ss_pred --HHHHhhchhhhhHHHHHHhhhhc---cC------CCccccchHHHHHHHHHHHhhcCchhHH---hhHHhhhhhhcCC
Q 039884 193 --VSVIRNCAEKLEPFVCGFLTSCF---LD------RDAVEGDLKEFYHEIIFKIFQCSPQMLL---AVIPNLIQELLVD 258 (757)
Q Consensus 193 --~~vi~~~~~~l~~~i~~~~~~~~---~~------~~~~~~~l~~~~~eli~el~~~~P~lL~---~ViP~l~~eL~sd 258 (757)
..++..++..+-..++.++-+-. .+ ....+..++...||-|-.|-+-+|.++. +++-.|=.-|..+
T Consensus 347 ~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~ 426 (501)
T PF13001_consen 347 GSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDE 426 (501)
T ss_pred cchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCc
Confidence 56677777665555555543221 11 1122345667899999999999999994 4666666778888
Q ss_pred ChHHHHHHHHHHHHHhcC---CCC-chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHH
Q 039884 259 QVDVRIKAVNLIGKICAQ---PDN-CLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACY 315 (757)
Q Consensus 259 ~~~~R~~At~llG~mfs~---~~~-~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il 315 (757)
..++|...-+.++.|... .+. .-....-....-+.....+....+|...|++|-.++
T Consensus 427 ~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 427 SPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 999999999998888753 111 112333344445555666888889999999998877
No 74
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.01 E-value=16 Score=43.10 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhc
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLL 336 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~ 336 (757)
..+..+..+|-+.+.+-|.. |-.--...+++.+.=..|-++.||++.++..+.+-..+|+ ....|.+.|...|.
T Consensus 33 kg~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ 106 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh
Confidence 34677889999999999975 4444457899999999999999999999999998888884 46688888888777
Q ss_pred CCCh-hHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc---cCChhHHHHHHHHH
Q 039884 337 DFDD-RVRTEAVIVACDLARSHLKFVPEKLISEATERLR---DKKISIRKKALLKL 388 (757)
Q Consensus 337 D~De-kVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~r---DKk~~VR~~A~~~L 388 (757)
+|| ..+..|=.++.++-..++ ...|..+..-+. .=--.||..+++-|
T Consensus 107 -tdd~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 107 -TDDPVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp ----HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 555 444444455655554443 233333333333 11234666666555
No 75
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=90.86 E-value=1.2 Score=43.94 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHH
Q 039884 228 FYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNA 307 (757)
Q Consensus 228 ~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~ 307 (757)
-.-+++.++++..+..-..++-++-+.+.+.....-..=+.+++.|....+ ....+|.+..++|++-+....+++-...
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p-~~vle~~~~l~~~ld~l~~lp~~~a~~l 115 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAP-LTVLECSSKLKELLDYLSFLPGDVAIGL 115 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-H-HHHS-S-HHHHGGGGGTTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456789999999999999999999998887766534455899999976543 4567888999999999999999999999
Q ss_pred HHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 039884 308 LRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACD 352 (757)
Q Consensus 308 v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~ 352 (757)
+.+.-.++..++ +....++--|+|-+.--|..+|..||..|++
T Consensus 116 l~Al~PLi~~s~--~lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 116 LRALLPLIKFSP--SLRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHHHTT-H--HHHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 999999887766 4556889999999999999999999998864
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.31 E-value=44 Score=39.34 Aligned_cols=340 Identities=13% Similarity=0.103 Sum_probs=187.8
Q ss_pred HHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHH-HHHHHhhhhhhhhccCCchHHHHHHHHHHHH
Q 039884 58 CVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKI-LEIVARSKCFVIMLDIDCNDLVLQMFNNFFS 136 (757)
Q Consensus 58 Cl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~l-Le~la~vks~vl~~Dl~~~~li~~lF~~ff~ 136 (757)
-|+.++|+.+----|...+.+.+|--+..-|.+ .++|..|++|+ ++-|+.+--=|+| -.=..+=|
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm----------~tssiMkD 109 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLM----------GTSSIMKD 109 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhH----------HHHHHHHh
Confidence 478999999988888888888888777776653 46788888886 4555544322221 11111112
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcch----HHHH---HHHHHhhchhhhhHH---
Q 039884 137 VVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYA----ASQL---AVSVIRNCAEKLEPF--- 206 (757)
Q Consensus 137 ~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~----a~~l---A~~vi~~~~~~l~~~--- 206 (757)
. + .+-+..+...-..-|..+|++......=..+-..++.+......+ ||.| +.+.+++--..-|-.
T Consensus 110 ~-~---~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~ 185 (898)
T COG5240 110 L-N---GGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD 185 (898)
T ss_pred h-c---cCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 1 1 122223333444555666666432222222222333322211111 2221 111111111111111
Q ss_pred HHHHhhhhc-cCCCccccchHH-HHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhh
Q 039884 207 VCGFLTSCF-LDRDAVEGDLKE-FYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADR 284 (757)
Q Consensus 207 i~~~~~~~~-~~~~~~~~~l~~-~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~ 284 (757)
+.||=+.-- .+-...+..+.+ ++-.++|++.+...-.++..+-.+...+.-.|-.--..-++.+..++-. ++.+..+
T Consensus 186 l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q 264 (898)
T COG5240 186 LKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQ 264 (898)
T ss_pred HhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHH
Confidence 112111100 011123344444 2446899999988877777666666555444443344445555555544 5578888
Q ss_pred cHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC---CC
Q 039884 285 YPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK---FV 361 (757)
Q Consensus 285 ~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~---~v 361 (757)
..+..+.||+-. -..|-++..+..-.+-..|-..+...+.+..|+.-|.-+.---|.+|...+.+++...++ .+
T Consensus 265 ~rpfL~~wls~k---~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDK---FEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCc---chhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 899999998743 334444433332222223323345667889999999999999999999999999977764 45
Q ss_pred CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHH
Q 039884 362 PEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERI 437 (757)
Q Consensus 362 ~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~ 437 (757)
++++= ..+-|-+..+--.||.+|-+- .+++++...+..||+-+ |-..| .|+-..||.+
T Consensus 342 N~evE----sLIsd~Nr~IstyAITtLLKT---------Gt~e~idrLv~~I~sfv-hD~SD----~FKiI~ida~ 399 (898)
T COG5240 342 NKEVE----SLISDENRTISTYAITTLLKT---------GTEETIDRLVNLIPSFV-HDMSD----GFKIIAIDAL 399 (898)
T ss_pred ChhHH----HHhhcccccchHHHHHHHHHc---------CchhhHHHHHHHHHHHH-Hhhcc----CceEEeHHHH
Confidence 66643 345788888888888877542 22355666778899753 33322 2444566633
No 77
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.27 E-value=3.7 Score=50.46 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=119.5
Q ss_pred hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHH-hhccCCCHhHHHHHHHHhHHHHhcCC-
Q 039884 242 QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFL-KRFSDKSAEVRLNALRCAKACYLGGP- 319 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL-~R~~D~s~~VR~~~v~~~~~il~~~~- 319 (757)
+++..+-|.++.++.+.+=..|..|++-+...+..++......|-.+.--|+ .|..|....|=+.-.++...+-...+
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 5777899999999999999999999999999999877334455555555554 47778777776666666665554433
Q ss_pred -CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 320 -FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 320 -~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
....+..+...|-+|+.|---.+|-+.+.++..+.. ...-..+.+.+++-+++|++.+|.++...+.+.++..
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 244566889999999999999999999999877665 2223478888899999999999999999999998865
No 78
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=21 Score=43.21 Aligned_cols=225 Identities=18% Similarity=0.155 Sum_probs=146.9
Q ss_pred cchHHHHHHHHHhhchhhhhH---HHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChH
Q 039884 185 PYAASQLAVSVIRNCAEKLEP---FVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVD 261 (757)
Q Consensus 185 ~~~a~~lA~~vi~~~~~~l~~---~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~ 261 (757)
+|-|+-|-..+...+.+.-+. ++..|+.+|+.....|- ..+ +-.-|..+....|..+...+..|.--|.+..+.
T Consensus 221 ~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV--~~E-aArai~~l~~~~~r~l~pavs~Lq~flssp~~~ 297 (865)
T KOG1078|consen 221 SPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMV--IYE-AARAIVSLPNTNSRELAPAVSVLQLFLSSPKVA 297 (865)
T ss_pred chhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHH--HHH-HHHHHhhccccCHhhcchHHHHHHHHhcCcHHH
Confidence 455666666666666666555 56667778775443221 111 223556677788888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCC---------------------------------------------------------------
Q 039884 262 VRIKAVNLIGKICAQPD--------------------------------------------------------------- 278 (757)
Q Consensus 262 ~R~~At~llG~mfs~~~--------------------------------------------------------------- 278 (757)
+|-.|++++-+.-...+
T Consensus 298 lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvda 377 (865)
T KOG1078|consen 298 LRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDA 377 (865)
T ss_pred HHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHH
Confidence 88888888888754321
Q ss_pred -CchhhhcHHHHH---HHHhhcc--CCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 039884 279 -NCLADRYPELFV---EFLKRFS--DKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACD 352 (757)
Q Consensus 279 -~~~~~~~~~~w~---~fL~R~~--D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~ 352 (757)
..+-..||.-|. .||++.- +-..+--..+|+....++..+|+..+ -.+..|++-.-|-+- +.-++..+.-
T Consensus 378 i~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe--~~L~~LCefIEDce~--~~i~~rILhl 453 (865)
T KOG1078|consen 378 IRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE--RGLEHLCEFIEDCEF--TQIAVRILHL 453 (865)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh--HHHHHHHHHHHhccc--hHHHHHHHHH
Confidence 023355666665 5665532 33344455667888888887775433 234555555555433 3455666666
Q ss_pred hhhhccC-CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccccc
Q 039884 353 LARSHLK-FVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYK 427 (757)
Q Consensus 353 l~~~~~~-~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~ 427 (757)
+..+.++ ..|..-.+.+..|+-=-+..||..|...|+++=. +++ .....||..+-+|.+|.|.+
T Consensus 454 LG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~--------~~~---~l~~sI~vllkRc~~D~Dde 518 (865)
T KOG1078|consen 454 LGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGA--------QDV---VLLPSILVLLKRCLNDSDDE 518 (865)
T ss_pred HhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhc--------CCC---CccccHHHHHHHHhcCchHH
Confidence 6677774 4577888899999888899999999999998751 212 34567999988888887744
No 79
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.08 E-value=23 Score=43.62 Aligned_cols=206 Identities=21% Similarity=0.205 Sum_probs=130.8
Q ss_pred CcchhhHHHHHHHHHHHHhhcC--CChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhh------h---HHHHHHh
Q 039884 143 EPHLSSLTNHMLSTMTHIINEE--TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKL------E---PFVCGFL 211 (757)
Q Consensus 143 ~~~~~~v~~~m~~Il~~vI~E~--~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l------~---~~i~~~~ 211 (757)
.+.+..-...|..+-..++--. .+.++-..++..|-.++-+ .++|+.+. =++..+..-+ + -|=|.||
T Consensus 788 ~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g-~~aa~~fs-iim~D~~~~~~r~~~a~~riLykQRfF 865 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTG-SPAAKLFS-IIMSDSNPLLKRKGHAEPRILYKQRFF 865 (1030)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCcccc-chHHHhhH-hhhccChHHhhhccccchhHHHHHHHH
Confidence 3445555666777777777542 3455555555444443322 12333222 1222222211 1 2446677
Q ss_pred hhhc---cCC-CccccchHHHHHHHHHHHhhcCchhH-----HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh
Q 039884 212 TSCF---LDR-DAVEGDLKEFYHEIIFKIFQCSPQML-----LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA 282 (757)
Q Consensus 212 ~~~~---~~~-~~~~~~l~~~~~eli~el~~~~P~lL-----~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~ 282 (757)
.++. +.+ .......+-.|++.+-.+-...|.-. -..+|.|=+-|.-.|..+|..+.+++-......+. +.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t-L~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET-LQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc-cc
Confidence 7652 111 11222344568887777777777522 23567788889999999999999999998877654 56
Q ss_pred hhcHHHHH-HHHhhccCCC---HhHHHHHHHHhHHHHhcCCC---cchHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 039884 283 DRYPELFV-EFLKRFSDKS---AEVRLNALRCAKACYLGGPF---RKESREILAALESRLLDFDDRVRTEAVIVAC 351 (757)
Q Consensus 283 ~~~~~~w~-~fL~R~~D~s---~~VR~~~v~~~~~il~~~~~---~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~ 351 (757)
.+|-+|+- .+|.=..|-+ ..||...+|+...+..-.|. .....+++.+|.+.|-|+.-.||.+||.+=.
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 66655554 5665555555 88999999988876654553 2346799999999999999999999998643
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=62 Score=39.31 Aligned_cols=278 Identities=13% Similarity=0.148 Sum_probs=154.2
Q ss_pred HHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHH--------Hhhhhhhh--hccCCchHHH
Q 039884 58 CVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIV--------ARSKCFVI--MLDIDCNDLV 127 (757)
Q Consensus 58 Cl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~l--------a~vks~vl--~~Dl~~~~li 127 (757)
-+..|.|..-| -.+.+||..|-++....+... .++..+++..-+=..+ ..+|-..| +|-|.-.||+
T Consensus 57 Llm~IiRfvlp---s~~~elKKLly~ywE~vPKt~-~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELl 132 (948)
T KOG1058|consen 57 LLMTIIRFVLP---SRNHELKKLLYYYWELVPKTD-SDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELL 132 (948)
T ss_pred HHHHHhheeec---cCchHHHHHHHHHHHHccccC-CCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHh
Confidence 35667777544 457788888888888887654 3333333322111111 11233333 3555555677
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhh-cCCChhHHHHHHHHhhccccCC--cchHHHHHHHHHhhchhhhh
Q 039884 128 LQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIIN-EETSLPLLEVVLWNLVKQEKDS--PYAASQLAVSVIRNCAEKLE 204 (757)
Q Consensus 128 ~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~-E~~~~~lld~Il~~l~~~~~~~--~~~a~~lA~~vi~~~~~~l~ 204 (757)
..|....-+... .-|+=-=.+.++.|++---. |.--.+.= .++..|+..+.+. ..+|+-+ +-.+....
T Consensus 133 epl~p~Iracle---HrhsYVRrNAilaifsIyk~~~~L~pDap-eLi~~fL~~e~DpsCkRNAFi~----L~~~D~Er- 203 (948)
T KOG1058|consen 133 EPLMPSIRACLE---HRHSYVRRNAILAIFSIYKNFEHLIPDAP-ELIESFLLTEQDPSCKRNAFLM----LFTTDPER- 203 (948)
T ss_pred hhhHHHHHHHHh---CcchhhhhhhheeehhHHhhhhhhcCChH-HHHHHHHHhccCchhHHHHHHH----HHhcCHHH-
Confidence 777766666543 33432223344444433322 22101111 1222333222221 0122221 11111111
Q ss_pred HHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC------
Q 039884 205 PFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD------ 278 (757)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~------ 278 (757)
--.|+.+|+.+-..-++.+.--.-|+||......|..=.--|-.+..-|.+.+..+|-.|--++-.|.+.|.
T Consensus 204 --Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa 281 (948)
T KOG1058|consen 204 --ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAA 281 (948)
T ss_pred --HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHH
Confidence 123555555443333334444567788888888888877777777777777777777777777766666541
Q ss_pred -----------------------Cchhhhc----HHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHH
Q 039884 279 -----------------------NCLADRY----PELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAAL 331 (757)
Q Consensus 279 -----------------------~~~~~~~----~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L 331 (757)
+.+...| .++--.+|.=.+-.+-+||.+++..+.++..+| ...|++..|
T Consensus 282 ~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----Nvediv~~L 357 (948)
T KOG1058|consen 282 STYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----NVEDIVQFL 357 (948)
T ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----cHHHHHHHH
Confidence 1122233 344556777778888999999999999887654 366999999
Q ss_pred HHhhcCCCh-------hHHHHHHHHHHHhh
Q 039884 332 ESRLLDFDD-------RVRTEAVIVACDLA 354 (757)
Q Consensus 332 ~~rL~D~De-------kVR~aaV~~i~~l~ 354 (757)
+++++++.. +-|..-++++...+
T Consensus 358 kke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 358 KKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 999877643 34888788775544
No 81
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.02 E-value=60 Score=39.14 Aligned_cols=136 Identities=20% Similarity=0.145 Sum_probs=70.6
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHhcCCCC---chhhh-----------------------cHHHHHHHHhhccCCCHhH
Q 039884 250 NLIQELLVDQVDVRIKAVNLIGKICAQPDN---CLADR-----------------------YPELFVEFLKRFSDKSAEV 303 (757)
Q Consensus 250 ~l~~eL~sd~~~~R~~At~llG~mfs~~~~---~~~~~-----------------------~~~~w~~fL~R~~D~s~~V 303 (757)
-+-.-|..-.+.+|+.||..+.++=+.|+. ..... -++|+-.-++|..|.+..+
T Consensus 130 ~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~an 209 (892)
T KOG2025|consen 130 KLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGAN 209 (892)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHH
Confidence 334456677889999999999998766521 12222 2233344445555555555
Q ss_pred HHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc-cCChhHHH
Q 039884 304 RLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLR-DKKISIRK 382 (757)
Q Consensus 304 R~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~r-DKk~~VR~ 382 (757)
|.-+-+.+-.-+.-.. ... ..=+-.++.-|.|-++.||.+.+.++ +..=++.....+++.+ +|+- .....|+.
T Consensus 210 RrlvY~r~lpkid~r~-lsi-~krv~LlewgLnDRe~sVk~A~~d~i---l~~Wl~~~dgni~ElL-~~ldvsnss~vav 283 (892)
T KOG2025|consen 210 RRLVYERCLPKIDLRS-LSI-DKRVLLLEWGLNDREFSVKGALVDAI---LSGWLRFSDGNILELL-ERLDVSNSSEVAV 283 (892)
T ss_pred HHHHHHHhhhhhhhhh-hhH-HHHHHHHHHhhhhhhhHHHHHHHHHH---HHHHhhhccccHHHHH-HHhccccchHHHH
Confidence 5443322211111111 011 12234455567777777777777777 3333333344555544 3333 23346777
Q ss_pred HHHHHHHHH
Q 039884 383 KALLKLLEV 391 (757)
Q Consensus 383 ~A~~~L~~l 391 (757)
.|++.|-+.
T Consensus 284 k~lealf~~ 292 (892)
T KOG2025|consen 284 KALEALFSG 292 (892)
T ss_pred HHHHHHHHH
Confidence 777777664
No 82
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.55 E-value=60 Score=38.48 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=76.3
Q ss_pred hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCC
Q 039884 283 DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVP 362 (757)
Q Consensus 283 ~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~ 362 (757)
.+|.+-|..+|.-..= +..+..-.-++++.+...=|+ .+.+-++++.+..-|-|..||.+|++.+-.+.+.+.++++
T Consensus 19 ~~~~~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp GGGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred ccCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 7899999999988884 677777777999999988885 4668899999999999999999999999888877766655
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 363 EKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 363 ~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
. +-..|++.+--=.+..+..+=+.|..+|+.
T Consensus 96 k-vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 96 K-VADVLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp H-HHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 3 223333333333466677777778888875
No 83
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.48 E-value=14 Score=39.93 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=68.8
Q ss_pred CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHH---------HHHHHHhhccCCCHhHHHHHHHH
Q 039884 240 SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPE---------LFVEFLKRFSDKSAEVRLNALRC 310 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~---------~w~~fL~R~~D~s~~VR~~~v~~ 310 (757)
.+++=...+|.+-.-++.+++.+|..|.+.+.+++-..|..+....+. +-+-|.+-..+-++++|...++.
T Consensus 58 d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EG 137 (298)
T PF12719_consen 58 DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEG 137 (298)
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334444456666666777899999999999999998877666655554 44445555555588999999999
Q ss_pred hHHHHhcCCCcchHHHHHHHHHHhhcCCC
Q 039884 311 AKACYLGGPFRKESREILAALESRLLDFD 339 (757)
Q Consensus 311 ~~~il~~~~~~~~~~ei~~~L~~rL~D~D 339 (757)
...++.++--.+ ..+++..|--...||.
T Consensus 138 l~KLlL~~~i~~-~~~vL~~Lll~yF~p~ 165 (298)
T PF12719_consen 138 LCKLLLSGRISD-PPKVLSRLLLLYFNPS 165 (298)
T ss_pred HHHHHhcCCCCc-HHHHHHHHHHHHcCcc
Confidence 998888655322 2466666666666554
No 84
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=2 Score=49.66 Aligned_cols=144 Identities=19% Similarity=0.192 Sum_probs=91.5
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC--chhhhcHHHHHHHHhhccCCCH--hHHHHHHHHhHHHHhcCCC-
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN--CLADRYPELFVEFLKRFSDKSA--EVRLNALRCAKACYLGGPF- 320 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~--~~~~~~~~~w~~fL~R~~D~s~--~VR~~~v~~~~~il~~~~~- 320 (757)
+.+|.+-.-|.+.+.++|-.|+-.+|.+.+..+. +++-.+ ..-...|.=++.... -+|-...-.+.-|-..+|+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 3567777789999999999999999999887531 122222 222333333333332 4444321222212223453
Q ss_pred -cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 039884 321 -RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLE 390 (757)
Q Consensus 321 -~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~ 390 (757)
.+....++++|...++.+|+.|...||-+++-+.....+ .+.-.+...|-+++.-.+..|+.-|+..+|+
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 355678999999999999999999999999877643332 1233555556666666677777667766665
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=88.21 E-value=5.9 Score=46.11 Aligned_cols=122 Identities=18% Similarity=0.239 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHH-HHHhhccCCCHh
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFV-EFLKRFSDKSAE 302 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~-~fL~R~~D~s~~ 302 (757)
+++++.-+.|..+.+..|+.=--.+-.|+.-. ||-+.-..+++.+|-+ |..+. -...|..|- --.+|.-=-..-
T Consensus 428 eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI--EDcey~~I~vrIL~iL-G~EgP--~a~~P~~yvrhIyNR~iLEN~i 502 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDSKERALEVLCTFI--EDCEYHQITVRILGIL-GREGP--RAKTPGKYVRHIYNRLILENNI 502 (898)
T ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH--hhcchhHHHHHHHHHh-cccCC--CCCCcchHHHHHHHHHHHhhhH
Confidence 44556666777777777765544444444332 2333444555555543 43221 112233332 234455555667
Q ss_pred HHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 039884 303 VRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVA 350 (757)
Q Consensus 303 VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i 350 (757)
||.+.|++...+-.+-.+.-.-+-+..+|++++.|.||.||-.|--.+
T Consensus 503 vRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 503 VRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 777777777766666544333445677777777888887777764444
No 86
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.15 E-value=0.98 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 365 LISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 365 ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
++..+.+.+.|..+.||..|...|+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35567788899999999999999999876
No 87
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.95 E-value=64 Score=38.13 Aligned_cols=368 Identities=14% Similarity=0.077 Sum_probs=189.1
Q ss_pred CcchhhHHHHHHHHHHHHhhcCCChh--HHHHHHHHhhccccC-CcchHHHHHHHHHhhchhh----hhHHHHHHhhhhc
Q 039884 143 EPHLSSLTNHMLSTMTHIINEETSLP--LLEVVLWNLVKQEKD-SPYAASQLAVSVIRNCAEK----LEPFVCGFLTSCF 215 (757)
Q Consensus 143 ~~~~~~v~~~m~~Il~~vI~E~~~~~--lld~Il~~l~~~~~~-~~~~a~~lA~~vi~~~~~~----l~~~i~~~~~~~~ 215 (757)
.+-...|...|++-....|++...+. -|..++.+.+....+ ...+++..-.......... ..+.+..+++..
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~- 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL- 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc-
Confidence 45556899999999999999976655 367778887764431 0011111111111111111 111222222211
Q ss_pred cCCCccccchHH----HHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHH
Q 039884 216 LDRDAVEGDLKE----FYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVE 291 (757)
Q Consensus 216 ~~~~~~~~~l~~----~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~ 291 (757)
+..+....+ -+..+...+-...++. +.+.+..-|.+..-..|..|-.-+...+...+..-.++ -..+..
T Consensus 106 ---~tps~~~q~~~~~~l~~~~~~~~~~~~~~---~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-~~~l~~ 178 (569)
T KOG1242|consen 106 ---DTPSKSVQRAVSTCLPPLVVLSKGLSGEY---VLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-FGFLDN 178 (569)
T ss_pred ---CCCcHHHHHHHHHHhhhHHHHhhccCHHH---HHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh-hhHHHH
Confidence 111111111 1222222223333333 44455556678888899999888888876554322222 234556
Q ss_pred HHhhccCCCHhHHHHHHHHhHHHHhc---CCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHH
Q 039884 292 FLKRFSDKSAEVRLNALRCAKACYLG---GPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISE 368 (757)
Q Consensus 292 fL~R~~D~s~~VR~~~v~~~~~il~~---~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~ 368 (757)
.-+...|+...-|.+..-.+...... .+..-....+...+..+.-|.+.+||.+|..+...+...-.-..-+.++-.
T Consensus 179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llps 258 (569)
T KOG1242|consen 179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPS 258 (569)
T ss_pred HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhh
Confidence 66667787777777532333323322 223344567899999999999999999999998777643333333444444
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhc-hhHHHHhhhcccccccchhhhHHHHH-HhccCCCC
Q 039884 369 ATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQ-IPCKILMLCYDKDYKEFRPQNIERIL-VEDLFPVL 446 (757)
Q Consensus 369 l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~w-IP~~il~~~y~~d~~~~r~~~ve~~l-~e~LlP~~ 446 (757)
+..=+.+.||.=...+++.||-+=..+ +..+..++.. || ++-...+|...+ .|+..++.+. +...+--.
T Consensus 259 ll~~l~~~kWrtK~aslellg~m~~~a-------p~qLs~~lp~iiP-~lsevl~DT~~e-vr~a~~~~l~~~~svidN~ 329 (569)
T KOG1242|consen 259 LLGSLLEAKWRTKMASLELLGAMADCA-------PKQLSLCLPDLIP-VLSEVLWDTKPE-VRKAGIETLLKFGSVIDNP 329 (569)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhc-------hHHHHHHHhHhhH-HHHHHHccCCHH-HHHHHHHHHHHHHHhhccH
Confidence 444455558888888999998543221 1122223332 34 334444455443 3554444332 11111001
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------hHhHHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHhhCCCc
Q 039884 447 EVEESTRHWVHLFSLFTPLHLKALNCVLSQK------KRFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDP 520 (757)
Q Consensus 447 ~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k------~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~ls~~fpd~ 520 (757)
+-..+...+++.++.=.....++...+..-. ..-...|--.|.- ..+ +-+.+++++....|..++..-+||
T Consensus 330 dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R--~l~-eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 330 DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKR--GLA-ERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHH--HHh-hccchhhhhHHHHHHHHHHhhcCH
Confidence 2223455555555433323344443333200 0000111111111 111 112345577888899999999999
Q ss_pred chHHHHHHHH
Q 039884 521 SKAEGCFQRL 530 (757)
Q Consensus 521 ~ka~~~l~~f 530 (757)
......|..+
T Consensus 407 ~~lapfl~~L 416 (569)
T KOG1242|consen 407 KDLAPFLPSL 416 (569)
T ss_pred HHHhhhHHHH
Confidence 8877777654
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=87.78 E-value=4.6 Score=44.10 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=89.3
Q ss_pred HHHhhcC-chhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCC------------
Q 039884 234 FKIFQCS-PQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKS------------ 300 (757)
Q Consensus 234 ~el~~~~-P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s------------ 300 (757)
+.|-+.- |+.+-..++.++. .++..+|..|...+|++-.... +...+.-..|..
T Consensus 96 ~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~ 162 (335)
T COG1413 96 DALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAAL 162 (335)
T ss_pred HHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchH
Confidence 3444433 4444444444444 6899999999999999954321 222222333322
Q ss_pred HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhH
Q 039884 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISI 380 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~V 380 (757)
-.+|...++.... .++ .+....+...+.|++..||.+|..+++.+.... ..+...+...+.|-.+.|
T Consensus 163 ~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 163 LDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHH
Confidence 1456555443332 221 145688889999999999999999998886554 456677888889999999
Q ss_pred HHHHHHHHHHHHH
Q 039884 381 RKKALLKLLEVYR 393 (757)
Q Consensus 381 R~~A~~~L~~lY~ 393 (757)
|..++..||.+=.
T Consensus 230 r~~~~~~l~~~~~ 242 (335)
T COG1413 230 RKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHhcccCc
Confidence 9999999987643
No 89
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=7.1 Score=45.36 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=119.2
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHhcCC---CCchhhhc--HHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc-
Q 039884 248 IPNLIQELLVDQVDVRIKAVNLIGKICAQP---DNCLADRY--PELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR- 321 (757)
Q Consensus 248 iP~l~~eL~sd~~~~R~~At~llG~mfs~~---~~~~~~~~--~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~- 321 (757)
.+..-..+.|++.+.++.|+..+-+++|.. +.+.+... =+.+-.||+| |..+.+|.+...+.-+|-.-+++.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhc
Confidence 444555677999999999999999999964 33333222 2456677774 445777776655666555433321
Q ss_pred --chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHH
Q 039884 322 --KESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKK-ISIRKKALLKLLEVYRE 394 (757)
Q Consensus 322 --~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk-~~VR~~A~~~L~~lY~~ 394 (757)
-.....+..|...+..+++.||-.||-++..++-..+. .++-..+..+..-+-... .+..+.++=+|+++.+.
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 00112357788999999999999999999999965552 244455555554444433 46777788888888774
Q ss_pred HHHhhhcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHH
Q 039884 395 YCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILV 439 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~ 439 (757)
.++....+.+..|-..|+.+.|..|.+ .+.|.+..
T Consensus 226 ------k~P~P~~~~v~~iLp~L~~ll~~~D~~----Vl~Da~WA 260 (514)
T KOG0166|consen 226 ------KNPSPPFDVVAPILPALLRLLHSTDEE----VLTDACWA 260 (514)
T ss_pred ------CCCCCcHHHHHHHHHHHHHHHhcCCHH----HHHHHHHH
Confidence 123444566777777888888877754 36776664
No 90
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.48 E-value=63 Score=38.29 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC----CC---CchhhhcHHHHHHHHhhc-cCC
Q 039884 228 FYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ----PD---NCLADRYPELFVEFLKRF-SDK 299 (757)
Q Consensus 228 ~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~----~~---~~~~~~~~~~w~~fL~R~-~D~ 299 (757)
.+..+..-+-.-.|+++....+.++..-...+..+|.-|+-.+|.|.-. .+ .....++-+.....|+.. .+.
T Consensus 379 ~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 458 (574)
T smart00638 379 LLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKG 458 (574)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 3444455555667888888888888776677888999999999988641 11 112334444444444443 345
Q ss_pred CHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhc---CCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC
Q 039884 300 SAEVRLNALRCAKACYLGGPFRKESREILAALESRLL---DFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDK 376 (757)
Q Consensus 300 s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~---D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDK 376 (757)
+...+..+++...++- +| ..+..|...+. +....+|.+||.++..++...++.+-+-++..... ++.
T Consensus 459 ~~~~~~~~LkaLGN~g--~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e 528 (574)
T smart00638 459 DEEEIQLYLKALGNAG--HP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAE 528 (574)
T ss_pred CchheeeHHHhhhccC--Ch------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCC
Confidence 5666777777666422 33 23344444443 55678999999999888776655555555555533 335
Q ss_pred ChhHHHHHHHHHHHH
Q 039884 377 KISIRKKALLKLLEV 391 (757)
Q Consensus 377 k~~VR~~A~~~L~~l 391 (757)
.+.||-.|...|.+-
T Consensus 529 ~~EvRiaA~~~lm~t 543 (574)
T smart00638 529 PPEVRMAAVLVLMET 543 (574)
T ss_pred ChHHHHHHHHHHHhc
Confidence 688999988777653
No 91
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.26 E-value=0.91 Score=34.56 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHhhhhccCCC-CHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 349 VACDLARSHLKFV-PEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 349 ~i~~l~~~~~~~v-~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
++..+...++... .+.+++.+..|+.|.++.||+.|++.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3445555555543 468999999999999999999998753
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=86.07 E-value=1.5e+02 Score=40.55 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHhhcCch---hH--HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccC
Q 039884 224 DLKEFYHEIIFKIFQCSPQ---ML--LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSD 298 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~---lL--~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D 298 (757)
.+++.+--.|..|....++ ++ .+++|.|-+-|.+.+...+..|...|+.+....+. .+.+++|.-+++
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~---~~I~~Lv~LLls---- 575 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA---ATISQLTALLLG---- 575 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch---hHHHHHHHHhcC----
Confidence 5555555566666554333 44 26899999999999999999999999999765433 233667766433
Q ss_pred CCHhHHHHHHHHhHHHHhcCCCcchH------HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHH
Q 039884 299 KSAEVRLNALRCAKACYLGGPFRKES------REILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISE 368 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~~~~~~~------~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~ 368 (757)
.++.+...+++...+++......+.. ..-++.|.+-|...+++++..|+.++..+...+.. .+....+--
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP 655 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP 655 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 45777777888777765533221111 13578888999999999999999999888754443 234455666
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 369 ATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 369 l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+...++..+..||++|...|+.+++.
T Consensus 656 LV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 656 CIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 67778899999999999999999973
No 93
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=85.26 E-value=4.6 Score=48.04 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=101.7
Q ss_pred hHHhhhhhhcCCC-hHHHHHHHHHHHHHhcCCCCchhhhcHHHHH-HHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 247 VIPNLIQELLVDQ-VDVRIKAVNLIGKICAQPDNCLADRYPELFV-EFLKRFSDKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 247 ViP~l~~eL~sd~-~~~R~~At~llG~mfs~~~~~~~~~~~~~w~-~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
|+|+|-..+.-.+ ...=+-..=.+|+.+...+ |+..+. .-++=|.=.+..||...+++...++-.-+.....
T Consensus 294 vlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~ 367 (690)
T KOG1243|consen 294 VLPILLAALEFGDAASDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN 367 (690)
T ss_pred HHHHHHHHhhccccchhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc
Confidence 6666666666555 3322333333455554433 333333 3345566667999999999999888654433445
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLA-RSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~-~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
.+|.+.+..-+.|+++.+|..+|+++..++ +-.-+..+.++++.++.---|-+..+|--+-..||++=
T Consensus 368 d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 368 DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 689999999999999999999999998887 34446789999999998888999999999888888874
No 94
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.09 E-value=9.2 Score=41.54 Aligned_cols=157 Identities=23% Similarity=0.255 Sum_probs=119.1
Q ss_pred HHHHHhhcCchhHH----hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHH
Q 039884 232 IIFKIFQCSPQMLL----AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNA 307 (757)
Q Consensus 232 li~el~~~~P~lL~----~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~ 307 (757)
.|..|..+.|+.|. .||.++-.++++-.-.+=..|+.++|+||+.-+...-+.-.++-...|+|..+-..=||...
T Consensus 111 ~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda 190 (334)
T KOG2933|consen 111 SIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDA 190 (334)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 45666666666554 49999999999999999999999999999987766777888899999999998888888887
Q ss_pred HHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCC--------CCHHHHHHHHHHhccCChh
Q 039884 308 LRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKF--------VPEKLISEATERLRDKKIS 379 (757)
Q Consensus 308 v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~--------v~~~ll~~l~eR~rDKk~~ 379 (757)
-+.... ..+|-. ..-++..|.-.+.-...+||..++..+ .....+. ...++...+++-++||=+.
T Consensus 191 ~kAL~a-MV~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~---~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~ 263 (334)
T KOG2933|consen 191 EKALVA-MVNHVT---PQKLLRKLIPILQHSNPRVRAKAALCF---SRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPE 263 (334)
T ss_pred HHHHHH-HHhccC---hHHHHHHHHHHHhhhchhhhhhhhccc---cccceeccccchhhHhHHHHHHHHHhhhcccccc
Confidence 555554 333332 335778888889999999999998887 3222222 3557889999999999999
Q ss_pred HHHHH---HHHHHHHHHHH
Q 039884 380 IRKKA---LLKLLEVYREY 395 (757)
Q Consensus 380 VR~~A---~~~L~~lY~~~ 395 (757)
+|+.| ...+...|+..
T Consensus 264 ~~~~a~~~~~~~~~v~~~~ 282 (334)
T KOG2933|consen 264 LREAARFVRLELKEVLKTA 282 (334)
T ss_pred cccchhHHHHhHHHHHHHh
Confidence 99555 44444555543
No 95
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=1.3e+02 Score=38.51 Aligned_cols=160 Identities=15% Similarity=0.181 Sum_probs=92.4
Q ss_pred HHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcC
Q 039884 86 SLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID-CNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEE 164 (757)
Q Consensus 86 ~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~-~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~ 164 (757)
..+..|+-..+. -..-.+.+.-+.+-..+.-..|.+ +=.=...+|..||.+- ....+.+......++..|+.|+
T Consensus 269 ~al~~l~ps~~D-~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~----~s~~~e~~q~a~q~l~~il~~s 343 (1176)
T KOG1248|consen 269 TALMTLSPSEND-DLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL----ESLIEELVQAASQSLKEILKES 343 (1176)
T ss_pred HHHHHhCCCccc-hHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH----hcccHHHHHHHHHHHHHHhccc
Confidence 444444433222 235566667677666666556654 3234457788888854 3334567778899999999998
Q ss_pred CC-hh-HHHHHHHHhhccccC-CcchHHHHHHHHHhhchhhhhHHHHHHhhhhc-cCCCccccchHHHHHHHHHHHhhcC
Q 039884 165 TS-LP-LLEVVLWNLVKQEKD-SPYAASQLAVSVIRNCAEKLEPFVCGFLTSCF-LDRDAVEGDLKEFYHEIIFKIFQCS 240 (757)
Q Consensus 165 ~~-~~-lld~Il~~l~~~~~~-~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~-~~~~~~~~~l~~~~~eli~el~~~~ 240 (757)
++ .+ +-..++..++...-. ..+...++-..++.+|+..--|++..-+.++- ...+.....-.+--+-|.-.+...-
T Consensus 344 v~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG 423 (1176)
T KOG1248|consen 344 VTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG 423 (1176)
T ss_pred CcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC
Confidence 77 33 333345555543221 11234455566788898866666655554432 1222111111122334566788899
Q ss_pred chhHHhhHHh
Q 039884 241 PQMLLAVIPN 250 (757)
Q Consensus 241 P~lL~~ViP~ 250 (757)
|+.+++++|.
T Consensus 424 Pe~vL~~lpL 433 (1176)
T KOG1248|consen 424 PERVLTILPL 433 (1176)
T ss_pred HHHHHHHcch
Confidence 9999999996
No 96
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=83.88 E-value=1.2e+02 Score=37.93 Aligned_cols=135 Identities=17% Similarity=0.086 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHH--------------------HHHHhHHHHh
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLN--------------------ALRCAKACYL 316 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~--------------------~v~~~~~il~ 316 (757)
..-..+|+.|...+.+++...+..++- +++..-.+--.|.--+||.. |..-.+.|+.
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~---sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~ 559 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAF---SILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQ 559 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchH---HHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhh
Confidence 445778888888888887654433321 33444444444433333322 2222222222
Q ss_pred cC-------CCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCChhHHHHHHHH
Q 039884 317 GG-------PFRKESREILAALESRLL-DFDDRVRTEAVIVACDLA-RSHLKFVPEKLISEATERLRDKKISIRKKALLK 387 (757)
Q Consensus 317 ~~-------~~~~~~~ei~~~L~~rL~-D~DekVR~aaV~~i~~l~-~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~ 387 (757)
.+ .+......++..+..|+. |.-..||++|+.....+. ..+....=++.|..+-+.+||.-.+||+.+...
T Consensus 560 d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~S 639 (1529)
T KOG0413|consen 560 DFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADS 639 (1529)
T ss_pred hcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHH
Confidence 11 112234577888889998 999999999998876554 223333334669999999999999999999999
Q ss_pred HHHHHHH
Q 039884 388 LLEVYRE 394 (757)
Q Consensus 388 L~~lY~~ 394 (757)
|+++-..
T Consensus 640 ltel~~~ 646 (1529)
T KOG0413|consen 640 LTELMLR 646 (1529)
T ss_pred HHHHHhh
Confidence 9998764
No 97
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=83.12 E-value=12 Score=45.69 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=108.6
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC-CchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPD-NCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~-~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
.+|.+...-..|--+-|..|..++|.+...-+ ...-...++.++.+ ..|..+.||..+-+.+..+-..-+.....+
T Consensus 199 lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s 275 (759)
T KOG0211|consen 199 LVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKS 275 (759)
T ss_pred HHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHh
Confidence 44444444344555678888888888876543 22335556666655 689999999998777666554444445566
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hccC-CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLAR-SHLK-FVPEKLISEATERLRDKKISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~~~~-~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~ 396 (757)
.+...+..-..|-.+.||.+|+.....+.. .+-. .+-..+..++..-.-|+.+.||--.+.....+|...-
T Consensus 276 ~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~ 348 (759)
T KOG0211|consen 276 EVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG 348 (759)
T ss_pred hccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc
Confidence 889999999999999999999999988773 2223 4455777888888899999999999999999998653
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=82.93 E-value=32 Score=36.69 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=72.9
Q ss_pred hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc----hhhhcHHHHHHHHhhccCCCHhHHHH-HHHHhHHHHh
Q 039884 242 QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC----LADRYPELFVEFLKRFSDKSAEVRLN-ALRCAKACYL 316 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~----~~~~~~~~w~~fL~R~~D~s~~VR~~-~v~~~~~il~ 316 (757)
.++.+.+|.+-.-|.+.++..|..+.+++..| |..+.. +..+=++-|-.++.+-.+.+.-+|+- |++-....+.
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL-S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL-SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh-ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 44556677777778899999999999999988 443221 23445667778888888888888874 4455544444
Q ss_pred cCC------C---------cchHHHHHHHHHHhhcCCChhHHHHHH
Q 039884 317 GGP------F---------RKESREILAALESRLLDFDDRVRTEAV 347 (757)
Q Consensus 317 ~~~------~---------~~~~~ei~~~L~~rL~D~DekVR~aaV 347 (757)
... . -.+.+++.+.|......+|+.||..||
T Consensus 209 ~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 209 KEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred cccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhcC
Confidence 321 0 134556778888888899999998764
No 99
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.86 E-value=35 Score=37.54 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHhh--cCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHH
Q 039884 230 HEIIFKIFQ--CSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNA 307 (757)
Q Consensus 230 ~eli~el~~--~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~ 307 (757)
.+++..+-. .++.++...+|.+..| -|+.....++..+|.-+..-+.++ -+++...|-+=+.|+.+.||..|
T Consensus 8 ~~~L~~l~~~~~s~~i~~~l~~~~~KE---~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w 81 (339)
T PF12074_consen 8 ASMLSSLPSSSLSSKIVQGLSPLLSKE---SNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAW 81 (339)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHH
Confidence 334444332 5677788888888877 577888888888888775432222 25778888999999999999999
Q ss_pred HHHhHHHHh
Q 039884 308 LRCAKACYL 316 (757)
Q Consensus 308 v~~~~~il~ 316 (757)
+.....++-
T Consensus 82 ~~~~~~~~~ 90 (339)
T PF12074_consen 82 LLCLGEALW 90 (339)
T ss_pred HHHHHHHHh
Confidence 999988876
No 100
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.47 E-value=59 Score=38.44 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=40.8
Q ss_pred hHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCch---hHHh-hHHhhhhhhcCCChHHHHHHHHHHHHHhc
Q 039884 204 EPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQ---MLLA-VIPNLIQELLVDQVDVRIKAVNLIGKICA 275 (757)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~---lL~~-ViP~l~~eL~sd~~~~R~~At~llG~mfs 275 (757)
+..|+++|-.++.+.++.+-.++.+.-.||.-+..+.-+ .|.+ .+--|..-+-.-+..+|+.|+..+.+.=.
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 456666676666555555545544444444444443322 2222 33344445556678889999888887654
No 101
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.04 E-value=12 Score=45.15 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=93.1
Q ss_pred HHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHH
Q 039884 208 CGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPE 287 (757)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~ 287 (757)
-.|+.+++.+ ..+-+.++..-+.|..+-...|+.=-.-+-.|+.-. +|-+.+..+|+.++.+ |..+. ....|+
T Consensus 393 m~FL~~~Lr~--eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rILhlL-G~EgP--~a~~Ps 465 (865)
T KOG1078|consen 393 MNFLSNMLRE--EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRILHLL-GKEGP--KAPNPS 465 (865)
T ss_pred HHHHHHHHHh--ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHHHHHH-hccCC--CCCCcc
Confidence 3445554443 223355666777788888878876444444443332 3456688899988887 43222 234455
Q ss_pred HHHHH-HhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 288 LFVEF-LKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 288 ~w~~f-L~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
-|-.| .+|..=-+..||.+.|.+..++....+.. .+-|...|+++++|.|+.||-.|--++..+.
T Consensus 466 kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 466 KYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 55444 47777778999999999999999766643 3468899999999999999999876664443
No 102
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.88 E-value=6.5 Score=35.24 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=72.3
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHH
Q 039884 251 LIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAA 330 (757)
Q Consensus 251 l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~ 330 (757)
.-.+|.++.+++|-.+..++++++..+. .-...-+.+..-|+.-..|.++-|=..+|+........+|+ ++++.
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~ 81 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPI 81 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHH
Confidence 3456788899999999999999998876 34566789999999999999999999999999888777763 57888
Q ss_pred HHHhhcCCChh
Q 039884 331 LESRLLDFDDR 341 (757)
Q Consensus 331 L~~rL~D~Dek 341 (757)
|.+...|.+++
T Consensus 82 L~~~y~~~~~~ 92 (92)
T PF10363_consen 82 LLDEYADPSEQ 92 (92)
T ss_pred HHHHHhCcccC
Confidence 88888888764
No 103
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=81.86 E-value=22 Score=43.99 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=109.9
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE 326 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~e 326 (757)
+.+.+..-+..-|..+=..|.+.++-|...-+..|-..-...+..+|.|+.|+-+.+|-..++++..++...+ ...
T Consensus 296 l~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~ 371 (815)
T KOG1820|consen 296 LGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSK 371 (815)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHH
Confidence 3445555556667788888888888887654444444456788999999999999999999999998887665 336
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhh-hhcc----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 327 ILAALESRLLDFDDRVRTEAVIVACDLA-RSHL----KFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 327 i~~~L~~rL~D~DekVR~aaV~~i~~l~-~~~~----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+.+.+..-+.+...++|-..-..+...- .... ....+.+...+.-.+.|+...||+.|.+.++.+++.+
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 6777778888899999988655553322 2221 2334577888889999999999999999999999976
No 104
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=23 Score=42.74 Aligned_cols=185 Identities=23% Similarity=0.204 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHH---HHHHhhhhccCCCccccch
Q 039884 149 LTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPF---VCGFLTSCFLDRDAVEGDL 225 (757)
Q Consensus 149 v~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~---i~~~~~~~~~~~~~~~~~l 225 (757)
|...=++||..+.+.+ .++.|+.-|........+.=-+-|...|-+|+-+.+.. |+-++-..-...+ ..
T Consensus 331 vK~eKleil~~la~~~----nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~----yv 402 (734)
T KOG1061|consen 331 VKLEKLEILIELANDA----NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVD----YV 402 (734)
T ss_pred hHHHHHHHHHHHhhHh----HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhccc----ce
Confidence 3333456666664433 34445555555444322222233344455555555543 3222222111111 11
Q ss_pred HHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHH-HHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHH
Q 039884 226 KEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVN-LIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVR 304 (757)
Q Consensus 226 ~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~-llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR 304 (757)
.+..--+|+.+.+.+|+.-..|++.+..-+.+=+++.=..|.- ++|+- .+-...++.+.+.|++-|.|-...|+
T Consensus 403 vqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y-----~~~i~~a~elL~~f~en~~dE~~~Vq 477 (734)
T KOG1061|consen 403 VQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEY-----AERIENALELLESFLENFKDETAEVQ 477 (734)
T ss_pred eeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhh-----hhccCcHHHHHHHHHhhcccchHHHH
Confidence 2234558999999999999999999988888766555444444 66664 23457788999999999999999999
Q ss_pred HHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCCh-hHHHHHH
Q 039884 305 LNALRCAKACYLGGPFRKESREILAALESRLLDFDD-RVRTEAV 347 (757)
Q Consensus 305 ~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~De-kVR~aaV 347 (757)
.+.+..+..+....|. +-.+.+...|.-.-.|+|. .+|-.+.
T Consensus 478 l~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 478 LELLTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHH
Confidence 9999999999999996 2233455666667777776 6776653
No 105
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.07 E-value=44 Score=39.58 Aligned_cols=335 Identities=15% Similarity=0.204 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhh------------ccCC--
Q 039884 28 EAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFK------------ELGN-- 93 (757)
Q Consensus 28 ~~~l~~~~~~L~~~~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~------------~L~d-- 93 (757)
.+-|.|+.+.+ .++|+....-||..+|-.++-+.-.. -||.-++...||..+-.-.+ ..+-
T Consensus 353 l~hl~~l~~ci--~~~l~D~~~~vRi~tA~alS~lae~~---~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~ii 427 (975)
T COG5181 353 LSHLGPLLKCI--SKLLKDRSRFVRIDTANALSYLAELV---GPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFII 427 (975)
T ss_pred HhhhhhHHHHH--HHHhhccceeeeehhHhHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhcccc
Confidence 44555666555 34666677779999999998877553 48999999999988753322 1110
Q ss_pred -CCCcchhHH-----HHHHHHHH-----h----hhhhhhhcc-CCc-------hHHHHHHHHHHHHhhhcCCCcchhhHH
Q 039884 94 -TGCPFFSKR-----VKILEIVA-----R----SKCFVIMLD-IDC-------NDLVLQMFNNFFSVVRLCSEPHLSSLT 150 (757)
Q Consensus 94 -~~~~~f~~~-----~~lLe~la-----~----vks~vl~~D-l~~-------~~li~~lF~~ff~~v~~~~~~~~~~v~ 150 (757)
-=+|.|.-| ..++-+.- + ++.++-.|| .+. +++..++|+-|..--.+ ++--+-++.
T Consensus 428 plm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A-~dr~~~k~v 506 (975)
T COG5181 428 PLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSA-GDRRSYKQV 506 (975)
T ss_pred ccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhc-cccccccee
Confidence 013334333 23333321 1 112222244 221 24566677777653111 111111222
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchh---------h----hhHHHHHHhhhhccC
Q 039884 151 NHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAE---------K----LEPFVCGFLTSCFLD 217 (757)
Q Consensus 151 ~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~---------~----l~~~i~~~~~~~~~~ 217 (757)
..-..|+... .....+.+-|+.++-.+.. +-++|+.....+.-. . +-..|+..|..
T Consensus 507 ~~ttvilAk~---~g~~~v~~kil~~~~De~e----p~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqe---- 575 (975)
T COG5181 507 VLTTVILAKM---GGDPRVSRKILEYYSDEPE----PYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQE---- 575 (975)
T ss_pred ehhHHHHHHH---cCChHHHHHHHhhccCCcc----hhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh----
Confidence 2222222222 1234578888877765422 222344443333221 1 22233322221
Q ss_pred CCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC---CC-------------Cch
Q 039884 218 RDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ---PD-------------NCL 281 (757)
Q Consensus 218 ~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~---~~-------------~~~ 281 (757)
.+....-+..-+..++..+---+-.-|..++..+-.-|++.-+.+|..|..++|-+.-. -+ -++
T Consensus 576 q~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l 655 (975)
T COG5181 576 QDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL 655 (975)
T ss_pred ccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc
Confidence 11000000000111111111001111222222333457888899999999998876431 00 134
Q ss_pred hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC---cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 039884 282 ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF---RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL 358 (757)
Q Consensus 282 ~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~---~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~ 358 (757)
...||++...-|+ +...|...+.- ..-+.+|+..|.--|..-.+||-...++-+..++...+
T Consensus 656 ge~ypEvLgsil~---------------Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p 720 (975)
T COG5181 656 GEDYPEVLGSILK---------------AICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP 720 (975)
T ss_pred CcccHHHHHHHHH---------------HHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc
Confidence 5666666655544 33333332211 11256888888888899999999999999999998888
Q ss_pred CCCCH-HHHHH---HHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 359 KFVPE-KLISE---ATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 359 ~~v~~-~ll~~---l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
..++. +-++. +.+-++--|.++|+.|.+++|-+=+.
T Consensus 721 eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 721 EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 88875 44443 34556777889999999999877654
No 106
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=80.04 E-value=1.5e+02 Score=36.13 Aligned_cols=313 Identities=16% Similarity=0.143 Sum_probs=169.1
Q ss_pred HHHHHHHhhh--hcccCCCchhHHHHHHHHHHHHhh---hCCCC----------CCCchhHHHHHHHHHHHhhcc-----
Q 039884 32 KPLRKSIIKH--GLLHQNDKDIRLSVATCVSELFRI---LAPEP----------PFEDNYLRGVFELIISLFKEL----- 91 (757)
Q Consensus 32 ~~~~~~L~~~--~lL~hkd~~Vr~~~acCl~dIlRi---~APda----------Py~d~~LkdIF~l~i~~~~~L----- 91 (757)
+|+...+++. ..|+||..+||.-.|--++-|--+ +--+. -|=+++-.++.-+++..+..+
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 3444444443 468999999997766544433322 21111 122333444444554444422
Q ss_pred -C---CCCCcchhHHHHHHHHHH------hhhhhhhhccCCchH-HHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHH
Q 039884 92 -G---NTGCPFFSKRVKILEIVA------RSKCFVIMLDIDCND-LVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHI 160 (757)
Q Consensus 92 -~---d~~~~~f~~~~~lLe~la------~vks~vl~~Dl~~~~-li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~v 160 (757)
. .|-+...++-.-||.+=. .+...-.++|..++- =..+--+..|..+. .=+.|.+.+...-...++-+
T Consensus 874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle-lLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE-LLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHH
Confidence 1 122333444444444421 122223345543221 12344455555432 11356666666666666554
Q ss_pred hhcC-CChhHHHHHHHHhhccccCCcchHHHHHHHHH-hhch-hhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHh
Q 039884 161 INEE-TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVI-RNCA-EKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIF 237 (757)
Q Consensus 161 I~E~-~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi-~~~~-~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~ 237 (757)
.+. .+++||+.+|++|--.... +.....+|-.|+ ..|+ +..-|.+ +|+--...-....++.+...-+..-+.
T Consensus 953 -akaIGPqdVLatLlnnLkvqeRq-~RvcTtvaIaIVaE~c~pFtVLPal---mneYrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 953 -AKAIGPQDVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCGPFTVLPAL---MNEYRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred -HHhcCHHHHHHHHHhcchHHHHH-hchhhhhhhhhhhhhcCchhhhHHH---HhhccCchhHHHHhHHHHHHHHHHHHH
Confidence 443 6789999999998754331 111222332222 2333 2333333 111000000011122233333444456
Q ss_pred hcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCC-CCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHh
Q 039884 238 QCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQP-DNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYL 316 (757)
Q Consensus 238 ~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~ 316 (757)
+.+-+-+.+|.|.||+-|-..|.-.|..|..++..|---+ +.--....-.+.+--.--.-|.||.|=..|.++..++-.
T Consensus 1028 emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~ 1107 (1172)
T KOG0213|consen 1028 EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRV 1107 (1172)
T ss_pred HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHH
Confidence 6667888999999999999999999999999999984322 211111122233322233457889998888888877655
Q ss_pred cCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 317 GGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 317 ~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
.-. ..-+.++...-|.-|--+||..-++++..+.
T Consensus 1108 ~Lg----~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1108 ALG----PQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred Hhc----hHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence 432 3367889999999999999999888886654
No 107
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.87 E-value=58 Score=40.08 Aligned_cols=184 Identities=17% Similarity=0.110 Sum_probs=122.9
Q ss_pred hhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhH--HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC
Q 039884 201 EKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQML--LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD 278 (757)
Q Consensus 201 ~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL--~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~ 278 (757)
+.+.+.++..+...-.+...+.+. -+..-++.+.+..|+-. +.|+|.+.+-+.-|...+|..|++.++.+++.=+
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~---~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRR---AVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHH---HHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 556666666666654444433222 22233333333333322 2366777776677789999999999999987533
Q ss_pred CchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhc-CCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh-h
Q 039884 279 NCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLG-GPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR-S 356 (757)
Q Consensus 279 ~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~ 356 (757)
.+- ..+......++.-..|.+..||--..+........ .|+ ....+.......-+.|..+.||.++-.-+.++.. .
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~-~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS-ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc-cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 222 77778889999999999999998765555443332 232 1233677888899999999999999888777763 2
Q ss_pred c----cCCCCHHHHHHHHHHhccCChhHHHHHHHHHH
Q 039884 357 H----LKFVPEKLISEATERLRDKKISIRKKALLKLL 389 (757)
Q Consensus 357 ~----~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~ 389 (757)
+ ++..-..++-.+.+.+-|....||.......+
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 3 23344466788999999999999987654433
No 108
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=78.14 E-value=4 Score=47.66 Aligned_cols=101 Identities=17% Similarity=0.016 Sum_probs=71.1
Q ss_pred HHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHH
Q 039884 290 VEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEA 369 (757)
Q Consensus 290 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l 369 (757)
..|..|..|+++.||+.|+......+..-|+--...-.++...=-|.|..+.||+.+++.+--+..+.++. +.++..
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~---d~ir~f 354 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT---DAIRRF 354 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc---hHHHHH
Confidence 37999999999999999998888877777742111123455556799999999999999996665554431 133333
Q ss_pred HHHh---------ccCChhHHHHHHHHHHHHHHH
Q 039884 370 TERL---------RDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 370 ~eR~---------rDKk~~VR~~A~~~L~~lY~~ 394 (757)
.+|- +|=.. ||-.+++.+..+=-.
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 3443 34444 999999998876543
No 109
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.92 E-value=49 Score=35.43 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=86.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCH----HHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCc
Q 039884 329 AALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPE----KLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQ 403 (757)
Q Consensus 329 ~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~----~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~ 403 (757)
..|..-|.|.|+.+|..|+..+..+-..-. ...+. -++....+|+.|. ..|.-. +.+|..+.+...
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~------- 72 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKN------- 72 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcC-------
Confidence 467889999999999999999988765544 23333 4556667777665 334433 777777664311
Q ss_pred hhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHH
Q 039884 404 MTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRS 482 (757)
Q Consensus 404 ~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~-~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~~ 482 (757)
+|... . ...++.++. ..-+. ++...|... +.++..+=++...++ +..-..
T Consensus 73 ---------~~~~~--------~----~~i~~~l~~-~~~~q~~~q~~R~~~-~~ll~~l~~~~~~~l------~~~~~~ 123 (262)
T PF14500_consen 73 ---------FSPES--------A----VKILRSLFQ-NVDVQSLPQSTRYAV-YQLLDSLLENHREAL------QSMGDD 123 (262)
T ss_pred ---------CChhh--------H----HHHHHHHHH-hCChhhhhHHHHHHH-HHHHHHHHHHhHHHH------HhchhH
Confidence 01000 0 113333332 22223 666677444 344433322222222 111224
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHhhCCCcchHHHHHH
Q 039884 483 EMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQ 528 (757)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~ 528 (757)
.+..|++.++. +..|+----.-+.+..+.+.|+-+.-+++.++
T Consensus 124 fv~~~i~~~~g---EkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd 166 (262)
T PF14500_consen 124 FVYGFIQLIDG---EKDPRNLLLSFKLLKVILQEFDISEFAEDLFD 166 (262)
T ss_pred HHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 56677777643 34555555566667777788874333333333
No 110
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=77.38 E-value=54 Score=37.76 Aligned_cols=180 Identities=12% Similarity=0.250 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhhCCC-CCCCchhHHHHHHHHHHHhhcc-CCCCCcchhHHHHHHHHHHhh-hhhhhhccCCch---HH
Q 039884 53 LSVATCVSELFRILAPE-PPFEDNYLRGVFELIISLFKEL-GNTGCPFFSKRVKILEIVARS-KCFVIMLDIDCN---DL 126 (757)
Q Consensus 53 ~~~acCl~dIlRi~APd-aPy~d~~LkdIF~l~i~~~~~L-~d~~~~~f~~~~~lLe~la~v-ks~vl~~Dl~~~---~l 126 (757)
-|+.=|+.=++=++.-+ .||.+ .+.+-++..+... ++|+||.|.+ |+-|+++.. |. +++-+.+ .+
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~----~il~~L~~il~~v~kNPsnP~FnH--ylFEsi~~lir~---~~~~~~~~v~~~ 114 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAV----EILQHLTAILKEVSKNPSNPRFNH--YLFESIGALIRF---VCEADPEAVSQF 114 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHH----HHHHHHHHHHHHHHTS---HHHHH--HHHHHHHHHHHH---S-GGGHH---HH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHhCCCCcchhh--hHHHHHHHHHHh---ccCCChhHHHHH
Confidence 47777877666554444 47754 3333344444433 3589998764 688999876 32 2332222 46
Q ss_pred HHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCC--Ch-----hHHHHHHHHhhccccCCcchHHHHHHHHHhhc
Q 039884 127 VLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEET--SL-----PLLEVVLWNLVKQEKDSPYAASQLAVSVIRNC 199 (757)
Q Consensus 127 i~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~--~~-----~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~ 199 (757)
-..+|-.|-.+.. .+- .....++..||+.+++=.. +. .++..++..-+=+.+++-|+.-++-...|++.
T Consensus 115 E~~L~P~f~~ILq---~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~ 190 (435)
T PF03378_consen 115 EEALFPPFQEILQ---QDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKD 190 (435)
T ss_dssp HHHHHHHHHHHHH---TT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhC
Confidence 6677777777765 332 2455567778887776533 22 24555555444445666677777888888888
Q ss_pred hhhhh--H---HHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCch-hHHhhHHh
Q 039884 200 AEKLE--P---FVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQ-MLLAVIPN 250 (757)
Q Consensus 200 ~~~l~--~---~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~-lL~~ViP~ 250 (757)
+..+. . .|-+-|.-++..+. ...+..+|+..+....|. .+.+.+|+
T Consensus 191 ~~~i~~~~~l~~iLgvFQkLi~sk~-----~D~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 191 PSFIVANNQLEPILGVFQKLIASKA-----NDHYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp GGG----S-CHHHHHHHHHHHT-TT-----CHHHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred chhhcchhhHHHHHHHHHHHHCCCC-----cchHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 77652 1 22223344443221 112466788888877776 45554443
No 111
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.17 E-value=20 Score=45.01 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=90.1
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh-hccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH
Q 039884 255 LLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLK-RFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES 333 (757)
Q Consensus 255 L~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~-R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~ 333 (757)
-+.-++.+|...++-+|--.-.=|..|.+ +.|-.++| -.+|+..+||..|++...+.+.+.....-....++.++.
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~---dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLS---DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhc---chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 34557899999999999764221222322 23334444 358999999999999999988763321112234555555
Q ss_pred h-----hcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 039884 334 R-----LLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLE 390 (757)
Q Consensus 334 r-----L~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~ 390 (757)
| ..|.+..||........ .......++++-+..|.+.|=|-++.||..|+.-|-.
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~--~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCL--LLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHH--HHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 4 47888888877765542 2333457788888899999999999999999988754
No 112
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.17 E-value=16 Score=43.49 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=85.4
Q ss_pred hcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhc----CC---------CCchhhhcHHHHHHHHhh-ccCCCHhH
Q 039884 238 QCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICA----QP---------DNCLADRYPELFVEFLKR-FSDKSAEV 303 (757)
Q Consensus 238 ~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs----~~---------~~~~~~~~~~~w~~fL~R-~~D~s~~V 303 (757)
+-.+++|..+.+.+...-...+..+|..|.-.+|.|.. .. .......+-+-+..-|+. ....+..-
T Consensus 427 ~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 506 (618)
T PF01347_consen 427 RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEE 506 (618)
T ss_dssp ---HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHH
T ss_pred CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHH
Confidence 33455566666666655556677888888888888764 21 234556666666666663 34456788
Q ss_pred HHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC--Ch
Q 039884 304 RLNALRCAKACYLGGPFRKESREILAALESRLLDF---DDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDK--KI 378 (757)
Q Consensus 304 R~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~---DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDK--k~ 378 (757)
++.+++...++- +| ++++.|...+.+. ...||.+|+.++..++... |..+...+..-.+|. .+
T Consensus 507 ~~~~LkaLgN~g--~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~----~~~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 507 KIVYLKALGNLG--HP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC----PEKVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHHHT---G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HHHHHHHHHHHHH-TTS-H
T ss_pred HHHHHHHhhccC--Cc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC----cHHHHHHHHHHhcCCCCCh
Confidence 888988888753 33 3456666666666 8999999999997664433 445555555554544 47
Q ss_pred hHHHHHHHHHHH
Q 039884 379 SIRKKALLKLLE 390 (757)
Q Consensus 379 ~VR~~A~~~L~~ 390 (757)
.||-.|...|.+
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 799998877765
No 113
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.90 E-value=32 Score=36.65 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=77.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhc
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLL 336 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~ 336 (757)
++|+.++..|.-++|..-+.|...-.-.+-..-.-..+-.+|.++.||...+.+..++-.+.......+.-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999998554422111122222334567788899999987777666543322222222333444444333
Q ss_pred C--CChhHHHHHHHHHHHhhhhc-cCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 337 D--FDDRVRTEAVIVACDLARSH-LKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 337 D--~DekVR~aaV~~i~~l~~~~-~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
. .|..|..++.+.+..+.... .+..=...+..+.+.+..=...+|..+++.|..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2 37788899999998886432 1211112233333333334556777777766655
No 114
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.85 E-value=1.8e+02 Score=34.76 Aligned_cols=233 Identities=15% Similarity=0.090 Sum_probs=133.1
Q ss_pred HhhhhhhhhccCCchH-HHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcC-CChhHHHHHHHHhhccccCCcch
Q 039884 110 ARSKCFVIMLDIDCND-LVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEE-TSLPLLEVVLWNLVKQEKDSPYA 187 (757)
Q Consensus 110 a~vks~vl~~Dl~~~~-li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~-~~~~lld~Il~~l~~~~~~~~~~ 187 (757)
++++..-.+++...+- =..+--+..|..+. .=+.|.+.+...-...++- |++. .++++|+++|++|--.++.. ..
T Consensus 707 nti~lvg~I~~~~peyi~~rEWMRIcfeLvd-~Lks~nKeiRR~A~~tfG~-Is~aiGPqdvL~~LlnnLkvqeRq~-Rv 783 (975)
T COG5181 707 NTIALVGTICMNSPEYIGVREWMRICFELVD-SLKSWNKEIRRNATETFGC-ISRAIGPQDVLDILLNNLKVQERQQ-RV 783 (975)
T ss_pred hHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHHhhHHHHHhhhhhhhh-HHhhcCHHHHHHHHHhcchHHHHHh-hh
Confidence 3445555566663221 23344555665542 1135666777666666654 4665 57889999999987544311 11
Q ss_pred HHHHHHHHH-hhch-hhhhHHHHHHhhhhccCCCc---cccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHH
Q 039884 188 ASQLAVSVI-RNCA-EKLEPFVCGFLTSCFLDRDA---VEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDV 262 (757)
Q Consensus 188 a~~lA~~vi-~~~~-~~l~~~i~~~~~~~~~~~~~---~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~ 262 (757)
...+|-.|+ .-|+ +..-|.+ +++ +... ...++.+...-...-+.+.+-+.+.++.|.||+-|...|...
T Consensus 784 ctsvaI~iVae~cgpfsVlP~l---m~d---Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vh 857 (975)
T COG5181 784 CTSVAISIVAEYCGPFSVLPTL---MSD---YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVH 857 (975)
T ss_pred hhhhhhhhhHhhcCchhhHHHH---Hhc---ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHH
Confidence 112222222 2222 2222222 111 1110 011222222223344666777888899999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChh
Q 039884 263 RIKAVNLIGKICAQP-DNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDR 341 (757)
Q Consensus 263 R~~At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~Dek 341 (757)
|..|..++-.+--.+ +.--....=.+.+-..--.-|.+|.|=..+-+...++-..-. ..-+.+++..-|.-|--+
T Consensus 858 Rqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg----~g~~m~Yv~qGLFHPs~~ 933 (975)
T COG5181 858 RQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLG----SGAMMKYVQQGLFHPSST 933 (975)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc----cHHHHHHHHHhccCchHH
Confidence 999999998885332 211112222333433344567888887766655554432222 235789999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 039884 342 VRTEAVIVACDLAR 355 (757)
Q Consensus 342 VR~aaV~~i~~l~~ 355 (757)
||.+=+.++.....
T Consensus 934 VRk~ywtvyn~myv 947 (975)
T COG5181 934 VRKRYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHhhhhh
Confidence 99998888755443
No 115
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=75.47 E-value=34 Score=40.35 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=91.0
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES 333 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~ 333 (757)
-...-++.+|..++.-+|.-.+.=|.-|....--=+..| -..|.+..||...++....+....|..+-..+..+.+..
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW--~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGW--SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHHHHhhhccccccc--ccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 445667889999999999887643222222111112223 258999999999999999888888865433345554444
Q ss_pred -----hhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChh---HHHHHHHHHHHHHHHH
Q 039884 334 -----RLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKIS---IRKKALLKLLEVYREY 395 (757)
Q Consensus 334 -----rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~---VR~~A~~~L~~lY~~~ 395 (757)
...|.|= ||..+++..|.+-.-. ..+.+-+..+.--|-|=++. +|.|+...++++-...
T Consensus 361 rILE~~r~D~d~-VRi~sik~l~~lr~lg--~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aev 427 (740)
T COG5537 361 RILEFLRTDSDC-VRICSIKSLCYLRILG--VLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEV 427 (740)
T ss_pred HHHHHHhhccch-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence 4578888 9999999998875432 34454455555558888877 6667766666655543
No 116
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=74.53 E-value=1e+02 Score=34.80 Aligned_cols=184 Identities=18% Similarity=0.327 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHhhccCCCCCcchhHHHH-HHH----HHHhhhhhhh--------hccCC-chHH----HHHHHHHHHH
Q 039884 75 NYLRGVFELIISLFKELGNTGCPFFSKRVK-ILE----IVARSKCFVI--------MLDID-CNDL----VLQMFNNFFS 136 (757)
Q Consensus 75 ~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~-lLe----~la~vks~vl--------~~Dl~-~~~l----i~~lF~~ff~ 136 (757)
.-++++|-+|+.-+..+.-..++|-.+..- |++ ...-..+... .++-+ ..++ +..+=+.|+.
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~ 218 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLE 218 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhc
Confidence 358999999999998888888887665421 111 0111111111 12221 1122 2222233444
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHhhc-----CCC-hhHHHHH----HHHhhccccCCcchHHHHHHH----HHhhchh-
Q 039884 137 VVRLCSEPHLSSLTNHMLSTMTHIINE-----ETS-LPLLEVV----LWNLVKQEKDSPYAASQLAVS----VIRNCAE- 201 (757)
Q Consensus 137 ~v~~~~~~~~~~v~~~m~~Il~~vI~E-----~~~-~~lld~I----l~~l~~~~~~~~~~a~~lA~~----vi~~~~~- 201 (757)
.-+..++.|... ++.++.+++.+ ... ..+++.+ |..++--+ ..|+.+++|.+ ++++|..
T Consensus 219 ~~~~~p~p~l~~----vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~--e~~~~k~~a~e~l~~mv~~~~~~ 292 (373)
T PF14911_consen 219 FKGSAPPPRLAS----VLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVN--EEPQVKKLATELLQYMVESCQVG 292 (373)
T ss_pred CCCCCCCCcHHH----HHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcC--CCcchhHHHHHHHHHHHHccccc
Confidence 311011223333 44455555555 111 1133433 33333222 12455555544 5566662
Q ss_pred -------hhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcC--------CChHHHHHH
Q 039884 202 -------KLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLV--------DQVDVRIKA 266 (757)
Q Consensus 202 -------~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~s--------d~~~~R~~A 266 (757)
+++..+++|...=. ..-...++.++..+...+|+++.+.||.++.++.. +|...|..=
T Consensus 293 ~~~~~~~~l~s~lrsfvqk~l-------~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~ 365 (373)
T PF14911_consen 293 SSGEPREQLTSVLRSFVQKYL-------AHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKAL 365 (373)
T ss_pred CcchHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 34444444443311 11234689999999999999999999999999874 355666554
Q ss_pred HHHHH
Q 039884 267 VNLIG 271 (757)
Q Consensus 267 t~llG 271 (757)
-++++
T Consensus 366 ~rL~~ 370 (373)
T PF14911_consen 366 SRLLS 370 (373)
T ss_pred HHHHH
Confidence 44443
No 117
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=73.43 E-value=13 Score=45.78 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHH----HHhHHHHhcCCCcchHHHHHHHHHHh
Q 039884 259 QVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNAL----RCAKACYLGGPFRKESREILAALESR 334 (757)
Q Consensus 259 ~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v----~~~~~il~~~~~~~~~~ei~~~L~~r 334 (757)
-..+|..++-|+|+|.-+++ .+++.|-+.+..=|....| +.||--.| ..|..+- ....--++.+..+
T Consensus 944 ~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~YT------am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSYT------AMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHHH------HHHHHhhHHHHHH
Confidence 45689999999999988765 6899999998888887766 77886443 3333321 1122346788899
Q ss_pred hcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 335 LLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 335 L~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
|.||++-||.++..-+..+-.+.+---..+++--..--.-|-+..||..|=-.+|.+-.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999998887766633344444444445678899988877666666554
No 118
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.42 E-value=2.8e+02 Score=35.79 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=96.2
Q ss_pred hhcCCCh-HHHHHHHHHHHHH---hcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHH
Q 039884 254 ELLVDQV-DVRIKAVNLIGKI---CAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILA 329 (757)
Q Consensus 254 eL~sd~~-~~R~~At~llG~m---fs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~ 329 (757)
.|.+|.. -+|..-.+-++.+ ||..++ +.-+..-.+-=.||++...|.++.+...++-.--.-+...+-|+.
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllP 659 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLP 659 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHH
Confidence 3555554 7777766667666 444322 222333334446899999999999998854322111112346899
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhhhcc--CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 330 ALESRLLDFDDRVRTEAVIVACDLARSHL--KFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 330 ~L~~rL~D~DekVR~aaV~~i~~l~~~~~--~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
.|..-|.|.+|-|=..|..++.-+.+..+ +-.=.++++.++-.+---+.=||..+..-++.+|+..
T Consensus 660 Ll~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 660 LLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999887776544 2233488888888888888889999999888888864
No 119
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.38 E-value=66 Score=32.55 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhcC-CCCch---------------hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhc-------
Q 039884 261 DVRIKAVNLIGKICAQ-PDNCL---------------ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLG------- 317 (757)
Q Consensus 261 ~~R~~At~llG~mfs~-~~~~~---------------~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~------- 317 (757)
.+|..|..+++.+.-. ++..+ ....++++..-+ .|.++.||...++....++..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 3799999999998865 32221 122333344333 599999999998888777653
Q ss_pred -----CCC---cchH---HHHHHHHHHh-----hcCCChhHHHHHHHHHHHhhhhcc-CCCCH----HHHHHHHHHhccC
Q 039884 318 -----GPF---RKES---REILAALESR-----LLDFDDRVRTEAVIVACDLARSHL-KFVPE----KLISEATERLRDK 376 (757)
Q Consensus 318 -----~~~---~~~~---~ei~~~L~~r-----L~D~DekVR~aaV~~i~~l~~~~~-~~v~~----~ll~~l~eR~rDK 376 (757)
.+. ...+ ..++..+... ....+..+=.+.++++..+....+ +-.+. +++..+..+++.+
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 110 0011 1233333332 234566666677888776664444 33343 6677788999999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 039884 377 KISIRKKALLKLLEVYRE 394 (757)
Q Consensus 377 k~~VR~~A~~~L~~lY~~ 394 (757)
.+.||..++..++.+-..
T Consensus 158 d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 999999999999988653
No 120
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.68 E-value=2.5e+02 Score=34.45 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=102.4
Q ss_pred HHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh---ccCCCHhHHHHHH
Q 039884 232 IIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKR---FSDKSAEVRLNAL 308 (757)
Q Consensus 232 li~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R---~~D~s~~VR~~~v 308 (757)
.|+++....-.+|...+=-+=.-|.+.|.++|.++..+.-++.+.... -+--.-+=.++.+- -+|..-+-|...+
T Consensus 303 rl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--ediv~~Lkke~~kT~~~e~d~~~~yRqlLi 380 (948)
T KOG1058|consen 303 RLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--EDIVQFLKKEVMKTHNEESDDNGKYRQLLI 380 (948)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH--HHHHHHHHHHHHhccccccccchHHHHHHH
Confidence 344444333334443333333357899999999999999999876532 21111111111111 2566677799999
Q ss_pred HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHH-HHH
Q 039884 309 RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKA-LLK 387 (757)
Q Consensus 309 ~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A-~~~ 387 (757)
+..-.+-.+-| +.+..++..|-+-+-|+.+.-=..++.-+.+....-+ .+-....+++++-=+.||--- -.+
T Consensus 381 ktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~Lr~~ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 381 KTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NLRASIIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred HHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHhhhhhcccccchh
Confidence 99999999888 4577999999999999999988888777766543322 233344455555445555321 122
Q ss_pred HHHHHHHHHHhhh---cCchhhhhhhhchh
Q 039884 388 LLEVYREYCKKCC---EGQMTVCDHFEQIP 414 (757)
Q Consensus 388 L~~lY~~~~~~~~---~~~~~~~~~~~wIP 414 (757)
-.-+-..||.... ..-..+...+|.||
T Consensus 454 alwi~GeYce~~~~i~~~~k~i~~slGEvp 483 (948)
T KOG1058|consen 454 ALWILGEYCEGLSEIQSVIKIIRQSLGEVP 483 (948)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 2222235554221 22233444567777
No 121
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=71.47 E-value=1.1e+02 Score=35.92 Aligned_cols=129 Identities=18% Similarity=0.122 Sum_probs=84.6
Q ss_pred HhhcCchhHHhhHHhhh----hhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHh
Q 039884 236 IFQCSPQMLLAVIPNLI----QELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCA 311 (757)
Q Consensus 236 l~~~~P~lL~~ViP~l~----~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~ 311 (757)
+....|.++...+|.++ ....+++...|..|=+++|.+....+. ++...-++-.-+.....+-.++||...-++.
T Consensus 360 l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~-l~~~d~~li~~LF~sL~~~~~evr~sIqeAL 438 (501)
T PF13001_consen 360 LKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS-LFSKDLSLIEFLFDSLEDESPEVRVSIQEAL 438 (501)
T ss_pred HHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc-cccccHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence 44567777777788884 245678999999999999999766544 3444456666667777888999999987777
Q ss_pred HHHHhcCCC--c----chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHH
Q 039884 312 KACYLGGPF--R----KESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLIS 367 (757)
Q Consensus 312 ~~il~~~~~--~----~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~ 367 (757)
..+..+-+. . .....+...+.....+....+|..||+-.... ..+++++...+.
T Consensus 439 ssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~--fpf~d~~aR~i~ 498 (501)
T PF13001_consen 439 SSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC--FPFSDVPARYIC 498 (501)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh--CCccchHHHHHH
Confidence 665543221 1 11112223333444577778999999987543 444566555443
No 122
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=70.67 E-value=1.9e+02 Score=32.73 Aligned_cols=232 Identities=14% Similarity=0.143 Sum_probs=128.7
Q ss_pred hcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCC
Q 039884 284 RYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVP 362 (757)
Q Consensus 284 ~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~ 362 (757)
+|-+-|..-|+-..--+-+=|++- |+++.+...-|+ .+.+-+++=-+..-|-|-.||.+|++.+-.....+. .-+.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~las-q~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLAS-QFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHH-HHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 888888888988888888889886 999999988885 466888888999999999999999887743333221 1122
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhh-hhhchhHHHHhhhcccccccchhhhHHHHHHhc
Q 039884 363 EKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCD-HFEQIPCKILMLCYDKDYKEFRPQNIERILVED 441 (757)
Q Consensus 363 ~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~-~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~ 441 (757)
+ +|..+.. =-.|+.||...- .|++.+.+ .+..|-++|+-+- .+.+ +.-||+.+.+
T Consensus 99 d-~l~qLLn-------------k~sl~~Lf~~~~----~~D~~irek~l~fi~tKl~~l~----~e~L-~kevE~~iv~- 154 (460)
T KOG2213|consen 99 D-VLVQLLN-------------KASLTGLFGQIE----VGDEQIREKVLKFIRTKLITLK----GEVL-TKEVERHIVD- 154 (460)
T ss_pred H-HHHHHHH-------------HHHHHHHHhhhh----hhhHHHHHHHHHHHHHHhhccc----HHHh-hhHHHHHHHH-
Confidence 2 2222222 123444555431 22222222 2334444433211 0000 0012211111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhH-----HHHHHHHHHHHhhhCC-----CchHHHHHHHHHHH
Q 039884 442 LFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFR-----SEMRYYLSVRKKEKGS-----CHDETHEQMKNSFV 511 (757)
Q Consensus 442 LlP~~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~-----~~~~~~l~~~~~~~~~-----~~~~~~~kl~~~i~ 511 (757)
-.-..+...+..+..+|..++..-..+| ..|+++++--+..++- ..++.-.++.+|..
T Consensus 155 ------------eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~ 222 (460)
T KOG2213|consen 155 ------------EIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLL 222 (460)
T ss_pred ------------HHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHH
Confidence 1111224455566777777776333222 3444444443333321 12344457777777
Q ss_pred HHHhhCCCcchHHHHHHHHHhc---------cchhHHHHHHhhh---chhhHHHH
Q 039884 512 KMSASFPDPSKAEGCFQRLNEM---------KDNKIFNSLEELL---DNMTIKNA 554 (757)
Q Consensus 512 ~ls~~fpd~~ka~~~l~~f~~~---------~D~ri~~ll~~~~---d~~t~~~a 554 (757)
.-..+|.-..+....+.-+++. -+.|=..+++.+. .++|..+|
T Consensus 223 ~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a 277 (460)
T KOG2213|consen 223 MAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAA 277 (460)
T ss_pred HhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHH
Confidence 7677888777777766655543 3667677777773 34454444
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=69.76 E-value=1e+02 Score=33.71 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=94.3
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcC--CCCchhhhcHHHHHHHHhhccCCC--HhHHHHHHHHhHHHHh-cCCCc
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQ--PDNCLADRYPELFVEFLKRFSDKS--AEVRLNALRCAKACYL-GGPFR 321 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~--~~~~~~~~~~~~w~~fL~R~~D~s--~~VR~~~v~~~~~il~-~~~~~ 321 (757)
++..++.-++.....++..|.+++|-+.-. ++.+--.-|..+...+..-..|.+ +.+|..|+.+..-+-. ...+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 455666677777778899999999988544 234444555555555555556654 5788888765554332 23333
Q ss_pred chHHHHHHHHHH---hh-c--CC---------ChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhccCChhHHH
Q 039884 322 KESREILAALES---RL-L--DF---------DDRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRDKKISIRK 382 (757)
Q Consensus 322 ~~~~ei~~~L~~---rL-~--D~---------DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rDKk~~VR~ 382 (757)
+...++++.+.. .. . |. +..|..+|+.+-+=+..... ...-.+.+..+.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 344434455541 11 1 21 35688888888765553222 222334566677777778899999
Q ss_pred HHHHHHHHHHHHHH
Q 039884 383 KALLKLLEVYREYC 396 (757)
Q Consensus 383 ~A~~~L~~lY~~~~ 396 (757)
.|=+.+|-+|-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999876
No 124
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=68.87 E-value=2e+02 Score=32.08 Aligned_cols=116 Identities=13% Similarity=0.189 Sum_probs=74.4
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHh--------hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh-----hhcHH
Q 039884 221 VEGDLKEFYHEIIFKIFQCSPQMLLA--------VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA-----DRYPE 287 (757)
Q Consensus 221 ~~~~l~~~~~eli~el~~~~P~lL~~--------ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~-----~~~~~ 287 (757)
...++...+...+.++....+++... +......-|.++|=-+|..++++||+++..+. ++. -..|+
T Consensus 176 ~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~-n~~vm~~yi~~~~ 254 (335)
T PF08569_consen 176 PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS-NFNVMTRYISSPE 254 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG-GHHHHHHHTT-HH
T ss_pred CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh-HHHHHHHHHCCHH
Confidence 34455555556666666555555433 44566677889999999999999999998853 333 35578
Q ss_pred HHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc-c--------hHHHHHHHHHHhhcCC
Q 039884 288 LFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR-K--------ESREILAALESRLLDF 338 (757)
Q Consensus 288 ~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~--------~~~ei~~~L~~rL~D~ 338 (757)
.....+.=.+|+|..||.+...--+ +.++||.. . -...++..|.+-..|.
T Consensus 255 nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 255 NLKLMMNLLRDKSKNIQFEAFHVFK-VFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHH-HHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHH-HHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8888899999999999999866665 44556731 1 1224455666666666
No 125
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=68.83 E-value=36 Score=40.80 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=112.9
Q ss_pred cCchhHH-hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhc
Q 039884 239 CSPQMLL-AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLG 317 (757)
Q Consensus 239 ~~P~lL~-~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~ 317 (757)
..|+.+. .+.|++..-+...|..+|..+++.+.-+.+.=+ --..+-++-+.|-+=-.|-.+.||..-+-+...|--.
T Consensus 361 Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 361 LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--hhhhcHHHHHHHHhhCccccCcccccceeeecccccc
Confidence 4555555 489999999999999999999999887755322 2245566666666666699999999766555544322
Q ss_pred -CCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 318 -GPFRKESREILAALESRLLDFDDRVRTEAVIVACDLA-RSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 318 -~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~-~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+|+. ...-+..++.+-+.||=-.-|.++|.+++... ....+.+.-.++-.+.-.+.|....||..|-..+-..+...
T Consensus 439 l~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 439 LAASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred cchhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 2221 12245667777899999999999999997765 33445666778888888889999999999998887777644
No 126
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=67.64 E-value=26 Score=35.38 Aligned_cols=70 Identities=24% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+.-++.+.+...++|..||..|+..+.-+....+- -|.+.+-.+.-..-|..+.||+.|...+..+..+|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 34456667799999999999999999877765541 25688888888999999999999999999999987
No 127
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=65.90 E-value=46 Score=36.84 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=68.9
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHhcC---CCCchh--hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc-
Q 039884 248 IPNLIQELLVDQVDVRIKAVNLIGKICAQ---PDNCLA--DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR- 321 (757)
Q Consensus 248 iP~l~~eL~sd~~~~R~~At~llG~mfs~---~~~~~~--~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~- 321 (757)
+|++...|-|||.+.-+.||--+-+++|. |+.+-+ .---+-|-+|+.-..---+..-.+|+ +.|-.++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWa------lTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWA------LTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHH------HhhhccCc
Confidence 48889999999999999999999999986 332221 12235577777533333344444442 2221110
Q ss_pred ------chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 039884 322 ------KESREILAALESRLLDFDDRVRTEAVIVACDLARS 356 (757)
Q Consensus 322 ------~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~ 356 (757)
-.-..-++.+...|.++++.||-+||=++..+|-.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 00113467888999999999999999999998843
No 128
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.82 E-value=43 Score=33.92 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=73.4
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCC-------------Cc-----------hhhhcHHHHHHHHhhccCCCHhHHHHHHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPD-------------NC-----------LADRYPELFVEFLKRFSDKSAEVRLNALR 309 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~-------------~~-----------~~~~~~~~w~~fL~R~~D~s~~VR~~~v~ 309 (757)
-+...+..+|..|..++.-|+.... .+ ..+-|..+...- -...++.+=.+.++
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK 124 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLK 124 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHH
Confidence 4667899999999999999996431 11 224444444443 24456777788899
Q ss_pred HhHHHHhcCCCc----chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 310 CAKACYLGGPFR----KESREILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 310 ~~~~il~~~~~~----~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
+....+.+.|.+ +...++++.++.++...|..||.++..++.-+.
T Consensus 125 ~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 125 CLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999989999953 456678888999999999999999988886664
No 129
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=65.30 E-value=1e+02 Score=39.39 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=106.5
Q ss_pred chHHHHHHHHHHHhhcC--chhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHH----Hhhc-
Q 039884 224 DLKEFYHEIIFKIFQCS--PQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEF----LKRF- 296 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~--P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~f----L~R~- 296 (757)
+.+-.+-+++.++.++. -..|-.|+|++-+-+.....++|..|.++|.++++.=. ++....-.+|.++ |+++
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhh
Confidence 44456888998888744 45667899999999999999999999999999998410 1122222233333 2332
Q ss_pred cC-CCHhHHHHHHHHhHHHHh------------------cCCC---------cchHHHHH----HHHHHhhcCCChhHHH
Q 039884 297 SD-KSAEVRLNALRCAKACYL------------------GGPF---------RKESREIL----AALESRLLDFDDRVRT 344 (757)
Q Consensus 297 ~D-~s~~VR~~~v~~~~~il~------------------~~~~---------~~~~~ei~----~~L~~rL~D~DekVR~ 344 (757)
+| -...||++...+.+.+.. |.|. ..+..++. ..+...|.|++.-||.
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr 596 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR 596 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 45 556788876544433221 1111 12233333 3444578999999999
Q ss_pred HHHHHHHHhhhhccC-CCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 345 EAVIVACDLARSHLK-FVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 345 aaV~~i~~l~~~~~~-~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
+-++.|+.+..+--+ --++-+|..+.-=+-||.+..|-.=.+.+
T Consensus 597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 999998888654333 34566778888888888888886544443
No 130
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.06 E-value=2.3e+02 Score=31.14 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=60.2
Q ss_pred CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhh-cHHHHHHHHhhccCC--CHhHHHHHHHHhHHHHh
Q 039884 240 SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADR-YPELFVEFLKRFSDK--SAEVRLNALRCAKACYL 316 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~-~~~~w~~fL~R~~D~--s~~VR~~~v~~~~~il~ 316 (757)
-|++|.+ |-+...|.++++- .-.++.+-.++.......... .....++|+-=.... +++||...++..+.++.
T Consensus 160 kps~ll~--~kvyskl~~~~d~--~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 160 KPSFLLS--EKVYSKLASEEDL--CWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA 235 (339)
T ss_pred CcchhcC--HHHHhccCCHhHH--HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3444444 5566665443332 455666666665543222211 245566777777777 88899988888888888
Q ss_pred cCCCcchHHHHHHHHHHhhcCCCh
Q 039884 317 GGPFRKESREILAALESRLLDFDD 340 (757)
Q Consensus 317 ~~~~~~~~~ei~~~L~~rL~D~De 340 (757)
.+|.. .+..|++++.+.+.+.+.
T Consensus 236 ~~~~~-l~~~li~~l~~~l~~~~~ 258 (339)
T PF12074_consen 236 SNPEL-LSKSLISGLWKWLSSSET 258 (339)
T ss_pred hChHH-HHHHHHHHHHHHHHhccc
Confidence 88753 566778888887766553
No 131
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=63.91 E-value=2.1e+02 Score=36.25 Aligned_cols=176 Identities=16% Similarity=0.250 Sum_probs=111.9
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcC-------CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHH
Q 039884 221 VEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLV-------DQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFL 293 (757)
Q Consensus 221 ~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~s-------d~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL 293 (757)
+..++-.+|..++-.|++|-|++-..++-+|..+... -+...++..|..+|.|.-..-...+..+ +..+.+|
T Consensus 473 t~ldllPyYsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll 551 (1128)
T KOG2051|consen 473 TRLDLLPYYSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLL 551 (1128)
T ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHH
Confidence 3446668999999999999999999999999888753 3678899999999999765422222221 3667788
Q ss_pred hhccCCCHhHHHHHHHHhHHHHhcCCCcch-HHHHHHHHH----HhhcCCChhHHHHHHHHHHHhhhhccCCC---CH--
Q 039884 294 KRFSDKSAEVRLNALRCAKACYLGGPFRKE-SREILAALE----SRLLDFDDRVRTEAVIVACDLARSHLKFV---PE-- 363 (757)
Q Consensus 294 ~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-~~ei~~~L~----~rL~D~DekVR~aaV~~i~~l~~~~~~~v---~~-- 363 (757)
.-|.-.+.++=+.+++.+..+|.++|+... .+-.++.+. .+-+|+-...=++-+-.+|-=+...-... |+
T Consensus 552 ~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~a~~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~~ 631 (1128)
T KOG2051|consen 552 NDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKRASALDSRQATLIENAYYLCNPPERSKRLSKKRPPMQ 631 (1128)
T ss_pred HhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHhHHhccChhhcccccccCCcHH
Confidence 888888999999999999999999996322 233344444 24455544333333333332221111110 11
Q ss_pred HHHHHHH---------------HHhccC-ChhHHHHHHHHHHHHHHHHHH
Q 039884 364 KLISEAT---------------ERLRDK-KISIRKKALLKLLEVYREYCK 397 (757)
Q Consensus 364 ~ll~~l~---------------eR~rDK-k~~VR~~A~~~L~~lY~~~~~ 397 (757)
+.++.+. -|.-|- .+.|-..++..+++.|.--++
T Consensus 632 efiR~Li~~dL~k~tvd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~ 681 (1128)
T KOG2051|consen 632 EFIRYLIRSDLSKDTVDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQ 681 (1128)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhcccccHHHHHHHHHHhhhhhccccc
Confidence 1111111 122233 256888888888888886443
No 132
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=63.80 E-value=48 Score=39.42 Aligned_cols=186 Identities=12% Similarity=0.217 Sum_probs=99.2
Q ss_pred HHHHHHHhh-ccCCCCCcchhHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHH
Q 039884 81 FELIISLFK-ELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTH 159 (757)
Q Consensus 81 F~l~i~~~~-~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~ 159 (757)
|..++.+|. .....+.+.-. .+..-|.....+|-.+|-.|..|+..+++.-.- +.+..+.......++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~---~l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~-------~~~~~~v~~y~~Fl~~ 100 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVS---QLIRWLKALSSCVSLLDSSCKQLVEAILSLNWL-------GRDEDFVEAYIQFLIN 100 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HH---HHHHHHHHHHHGGGGG-SCCHHHHHHHHT-TGG-------GS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCC-------CCCHHHHHHHHHHHHH
Confidence 555555653 22223333222 444555566677877887788888877755221 3345566666666666
Q ss_pred HhhcCCC--hhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHh
Q 039884 160 IINEETS--LPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIF 237 (757)
Q Consensus 160 vI~E~~~--~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~ 237 (757)
+..-... .++++.+..+|.++... .+.. .+ ..........++.|.+|..|-
T Consensus 101 Lvsa~~~yl~~vl~~LV~~f~p~~~~-------~~~~-----------------~~---~~~~~~~~~~~~vH~~L~~Il 153 (563)
T PF05327_consen 101 LVSAQPKYLSPVLSMLVKNFIPPPSS-------IAEW-----------------PG---CPPEKRREIYERVHDALQKIL 153 (563)
T ss_dssp HHHH-GGGHHHHHHHHHHGGGS-HHH-------HHH-----------------------------------HHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhccCCCcc-------cccc-----------------ch---hhhhhhhhhHHHHHHHHHHHH
Confidence 6554322 45777777777753221 1110 00 011122344568999999999
Q ss_pred hcCchhHHhhHHhhhhhhcCCChHHHHH--HHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHH
Q 039884 238 QCSPQMLLAVIPNLIQELLVDQVDVRIK--AVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNA 307 (757)
Q Consensus 238 ~~~P~lL~~ViP~l~~eL~sd~~~~R~~--At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~ 307 (757)
+..|.....++|.|....=.-..+.+.. -++-+=++..+. ..--.++|..-+.|...++++|.+.|
T Consensus 154 ~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~----P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 154 RLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYC----PELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp HH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcch----HHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9999999999999888776555444433 233344443332 12234788888888888888777766
No 133
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=61.91 E-value=2e+02 Score=31.58 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHhhcCC---------ChhHHHHHHHHhhccccC-CcchHHHHHHHHHhhchhhhhHHHHHHhhhhc--
Q 039884 148 SLTNHMLSTMTHIINEET---------SLPLLEVVLWNLVKQEKD-SPYAASQLAVSVIRNCAEKLEPFVCGFLTSCF-- 215 (757)
Q Consensus 148 ~v~~~m~~Il~~vI~E~~---------~~~lld~Il~~l~~~~~~-~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~-- 215 (757)
.+...++.++...|+-+. -+|+++.+|.-.-+..+. ..|..-.+...+|++-+..+.+.+.+.+..+.
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344445555555554322 134555555443332211 12455567777888888877776666655442
Q ss_pred ----cCCC-ccccchHHHHHHHHHHHhhcCchhH--------HhhHHhhhhhhcCCChHHHHHHHHHHHHHhc
Q 039884 216 ----LDRD-AVEGDLKEFYHEIIFKIFQCSPQML--------LAVIPNLIQELLVDQVDVRIKAVNLIGKICA 275 (757)
Q Consensus 216 ----~~~~-~~~~~l~~~~~eli~el~~~~P~lL--------~~ViP~l~~eL~sd~~~~R~~At~llG~mfs 275 (757)
...+ ..--+++..++.+|..+.+.+|+.+ ..++-.+..-.++.+.++-..+.+.+..|+.
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 2222 2223666778899998888766555 4567777888889999999999999999975
No 134
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=59.57 E-value=2.6e+02 Score=30.21 Aligned_cols=62 Identities=26% Similarity=0.231 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCC--hhHHHHHHHHHHHHHHHHH
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKK--ISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk--~~VR~~A~~~L~~lY~~~~ 396 (757)
+.+|.+-+.|.-.-.|.+|--++.++ -++.-+-.+.+.++|.+ +=||.+|.+.||.+=...|
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl-------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQL-------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhc-------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 34455555555555555555555444 35556677778888875 7799999999998866544
No 135
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.06 E-value=69 Score=38.82 Aligned_cols=157 Identities=20% Similarity=0.165 Sum_probs=95.2
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHH-HHHHhHHHHhcCCCcchHHHH
Q 039884 249 PNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLN-ALRCAKACYLGGPFRKESREI 327 (757)
Q Consensus 249 P~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~-~v~~~~~il~~~~~~~~~~ei 327 (757)
-+..+|=+.|... |=.|+-+---||+..+ ...++-++. .+|++|-+|.. |...+..+.-... ...|
T Consensus 490 ~~Ya~ETQHeki~-RGl~vGiaL~~ygrqe-----~Ad~lI~el---~~dkdpilR~~Gm~t~alAy~GTgn----nkai 556 (929)
T KOG2062|consen 490 LTYAQETQHEKII-RGLAVGIALVVYGRQE-----DADPLIKEL---LRDKDPILRYGGMYTLALAYVGTGN----NKAI 556 (929)
T ss_pred HHHhhhhhHHHHH-HHHHHhHHHHHhhhhh-----hhHHHHHHH---hcCCchhhhhhhHHHHHHHHhccCc----hhhH
Confidence 3445555555554 6677666556666543 222344444 35778888885 5455544332211 2245
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC-------------------------------CHHHHHHHHHHhccC
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHLKFV-------------------------------PEKLISEATERLRDK 376 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v-------------------------------~~~ll~~l~eR~rDK 376 (757)
-..|.--..|.++.||.+||.++.=+-..+++.+ ..+.+..+--.+.|+
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP 636 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh
Confidence 5556666779999999999888755544444321 356777777788899
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccc
Q 039884 377 KISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKD 425 (757)
Q Consensus 377 k~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d 425 (757)
.-=||+-||-++|-+--... +.....+..|-..+....-+++
T Consensus 637 ~~fVRQgAlIa~amIm~Q~t-------~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 637 VDFVRQGALIALAMIMIQQT-------EQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred HHHHHHHHHHHHHHHHHhcc-------cccCchHHHHHHHHHHHhhhhh
Confidence 99999999999998865432 1123344455555555554444
No 136
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.29 E-value=72 Score=30.51 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--CCCCHHHHHHHHHHhccCChh----HHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL--KFVPEKLISEATERLRDKKIS----IRKKALLKLLEVY 392 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~--~~v~~~ll~~l~eR~rDKk~~----VR~~A~~~L~~lY 392 (757)
..+.+.+.+|.+||...+.+|-.-|+..+..+... .| ...+.+.+..+...+.+++.. ||+.++..+.. |
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~-W 116 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE-W 116 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH-H
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH-H
Confidence 44779999999999999999999999888777642 23 457889999999988888755 77777766554 4
Q ss_pred HHHH
Q 039884 393 REYC 396 (757)
Q Consensus 393 ~~~~ 396 (757)
...+
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4444
No 137
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.59 E-value=4.5e+02 Score=32.44 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=52.8
Q ss_pred ccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 039884 296 FSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL 358 (757)
Q Consensus 296 ~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~ 358 (757)
..|.=+.|+..+++.+-.+|.+.|+ ....|+..|-.+|-|++-++-..|.-.+..+...++
T Consensus 313 S~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 313 SKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 4577789999999999999999994 456889999999999999999999888888877666
No 138
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.17 E-value=4.7e+02 Score=32.53 Aligned_cols=117 Identities=11% Similarity=0.166 Sum_probs=69.0
Q ss_pred CCCCCcchhHHHHHHHHHHhhhhhhhhccCCc---hHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCC-h
Q 039884 92 GNTGCPFFSKRVKILEIVARSKCFVIMLDIDC---NDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETS-L 167 (757)
Q Consensus 92 ~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~~---~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~-~ 167 (757)
++|++|.|. .|+.|+++-+ +.-.++-+. ..+...||-.|-.+.+ .+- .....+...+|+.+++-+.. .
T Consensus 603 KNPs~P~fn--HYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~---eDI-~EfiPYvfQlla~lve~~~~~i 674 (960)
T KOG1992|consen 603 KNPSNPQFN--HYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILS---EDI-QEFIPYVFQLLAVLVEHSSGTI 674 (960)
T ss_pred cCCCCchhH--HHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 567777754 5788988654 222244431 1366777766666554 333 35677788888888876533 2
Q ss_pred -hHHHHHHHHhhccc----cCCcchHHHHHHHHHhhchhhhh-----HHHHHHhhhhcc
Q 039884 168 -PLLEVVLWNLVKQE----KDSPYAASQLAVSVIRNCAEKLE-----PFVCGFLTSCFL 216 (757)
Q Consensus 168 -~lld~Il~~l~~~~----~~~~~~a~~lA~~vi~~~~~~l~-----~~i~~~~~~~~~ 216 (757)
+=..-++..++.++ ++.-|+.-++-...+++.+..++ .+|-++|...+.
T Consensus 675 p~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 675 PDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred chhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 22333343444443 45567777787777777665544 355566666553
No 139
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=55.61 E-value=1.2e+02 Score=30.58 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHHHhhccCCCHhHHHHHHHHhHHHHhc---CCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC
Q 039884 287 ELFVEFLKRFSDKSAEVRLNALRCAKACYLG---GPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK 359 (757)
Q Consensus 287 ~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~---~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~ 359 (757)
..|...|+-.-+.+..||...++....++.. ||. +.++.|-...-|+++.||..|.....++......
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 4588888999999999999999999988753 663 6788999999999999999998888887755443
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=54.54 E-value=1.4e+02 Score=33.16 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=94.2
Q ss_pred hHHhhhhhhcCC-------ChHHHHH---HHHHHHHHhcCC-CCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHH
Q 039884 247 VIPNLIQELLVD-------QVDVRIK---AVNLIGKICAQP-DNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACY 315 (757)
Q Consensus 247 ViP~l~~eL~sd-------~~~~R~~---At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il 315 (757)
=+||+-.+|+-+ |+..|-. .|..+-|+|... |..++..|....+.=|. .| +..|.+...++..-++
T Consensus 34 eLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLi--ad-dasVKiLackqigcil 110 (524)
T KOG4413|consen 34 ELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLI--AD-DASVKILACKQIGCIL 110 (524)
T ss_pred hhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhccc--CC-cchhhhhhHhhhhHHH
Confidence 356666666655 5556666 788889999654 66778777776665443 34 5667776667776555
Q ss_pred hcCCCcc-------hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh--ccC------CCCHHHHHHHHHHhccCChhH
Q 039884 316 LGGPFRK-------ESREILAALESRLLDFDDRVRTEAVIVACDLARS--HLK------FVPEKLISEATERLRDKKISI 380 (757)
Q Consensus 316 ~~~~~~~-------~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~--~~~------~v~~~ll~~l~eR~rDKk~~V 380 (757)
.+....+ ...+|.+.+-.+....|+.|-.+|++.+..++.+ .++ ...+--+..++.|+-|= +
T Consensus 111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndi---a 187 (524)
T KOG4413|consen 111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDI---A 187 (524)
T ss_pred hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhH---H
Confidence 4432110 1235667888899999999999999999998743 222 23445566777777664 6
Q ss_pred HHHHHHHHHHHHHH
Q 039884 381 RKKALLKLLEVYRE 394 (757)
Q Consensus 381 R~~A~~~L~~lY~~ 394 (757)
|-...+.+-++|..
T Consensus 188 RvRVleLIieifSi 201 (524)
T KOG4413|consen 188 RVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777777763
No 141
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.45 E-value=45 Score=40.29 Aligned_cols=125 Identities=22% Similarity=0.184 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcC
Q 039884 258 DQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLD 337 (757)
Q Consensus 258 d~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D 337 (757)
.|.++|..||-.+|=.+...+. +-|.+-. .|.... .+-||... -.+-+|-.+..-..++ ++.|.....|
T Consensus 567 ~nDDVrRaAVialGFVl~~dp~----~~~s~V~-lLses~--N~HVRyGa-A~ALGIaCAGtG~~eA---i~lLepl~~D 635 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDPE----QLPSTVS-LLSESY--NPHVRYGA-AMALGIACAGTGLKEA---INLLEPLTSD 635 (929)
T ss_pred cchHHHHHHHHHheeeEecChh----hchHHHH-HHhhhc--ChhhhhhH-HHHHhhhhcCCCcHHH---HHHHhhhhcC
Confidence 3566666666666665544321 2222222 122111 36677654 3344444444433333 4455555669
Q ss_pred CChhHHHHHHHHHHHhhhh-ccCCCCH--HHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 039884 338 FDDRVRTEAVIVACDLARS-HLKFVPE--KLISEATERLRDKKISIRKKALLKLLEVYREYCK 397 (757)
Q Consensus 338 ~DekVR~aaV~~i~~l~~~-~~~~v~~--~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~ 397 (757)
+.+-||..|+.+..=+... +-..+|. .+-+.+..-+-||+-. +|..+|.+-....-
T Consensus 636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd----~~aK~GAilAqGil 694 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED----GMAKFGAILAQGIL 694 (929)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH----HHHHHHHHHHhhhh
Confidence 9999999999998666543 3344554 6677777778899754 68888887776543
No 142
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=53.59 E-value=3.6e+02 Score=30.04 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCC-C------Cchhhhc-HHHHHHHHhh
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQP-D------NCLADRY-PELFVEFLKR 295 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~-~------~~~~~~~-~~~w~~fL~R 295 (757)
...+..+.+..|+++. ++++.|-.-|..=+-+.|..++..++.++... + .++...| |++....+.-
T Consensus 60 p~~e~v~qLa~Ei~~~------dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g 133 (335)
T PF08569_consen 60 PNPEQVAQLAQEIYRS------DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG 133 (335)
T ss_dssp --HHHHHHHHHHHHHH------THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHh------CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH
Confidence 3345577777777765 22223333444444558999999999998753 2 2356788 9999999998
Q ss_pred ccCCCHhHHHHHH-------HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCC------
Q 039884 296 FSDKSAEVRLNAL-------RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVP------ 362 (757)
Q Consensus 296 ~~D~s~~VR~~~v-------~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~------ 362 (757)
..+.+..+=...+ +....+++..+ ....+-+-...+.=.|=..|-..+.++-..+-..++
T Consensus 134 y~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n 206 (335)
T PF08569_consen 134 YENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN 206 (335)
T ss_dssp GGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT
T ss_pred hcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8876654433211 11122222222 112233445555666666666666665543333322
Q ss_pred -HHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 363 -EKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 363 -~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+.........+.-.+...|+.+++.||.+--.
T Consensus 207 ~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 207 YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 25556666778888999999999999988753
No 143
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=53.48 E-value=1.2e+02 Score=28.65 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc---c--CCCCHHHHHHHHHHhccC---ChhHHHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLARSH---L--KFVPEKLISEATERLRDK---KISIRKKALLKLLEVYR 393 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~---~--~~v~~~ll~~l~eR~rDK---k~~VR~~A~~~L~~lY~ 393 (757)
....+.+.+|++|+...+.+|.+.|+..+..+.... | ...+.+.+..+...+..+ ...||+.++..+..-+.
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999987776422 3 344557777777777664 57899999887776555
Q ss_pred HH
Q 039884 394 EY 395 (757)
Q Consensus 394 ~~ 395 (757)
.+
T Consensus 113 ~f 114 (133)
T cd03561 113 SF 114 (133)
T ss_pred Hh
Confidence 43
No 144
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=53.06 E-value=3.9e+02 Score=30.39 Aligned_cols=268 Identities=15% Similarity=0.203 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhc--------HHHHHHHHhhcc
Q 039884 226 KEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRY--------PELFVEFLKRFS 297 (757)
Q Consensus 226 ~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~--------~~~w~~fL~R~~ 297 (757)
++-+..+|-.-++.-|++--..+--=-+-...+|+.+|..|.+-+-..-.. ..+.... .......++...
T Consensus 41 k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk~sl~~Lf~~~~ 118 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNKASLTGLFGQIE 118 (460)
T ss_pred HHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 345888999999999998877654333334467899999999977654322 1111111 112222233333
Q ss_pred CCCHhHHHHHHHHhHHHHhcCCC----cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh-hhccC-CCCHHHHHHHHH
Q 039884 298 DKSAEVRLNALRCAKACYLGGPF----RKESREILAALESRLLDFDDRVRTEAVIVACDLA-RSHLK-FVPEKLISEATE 371 (757)
Q Consensus 298 D~s~~VR~~~v~~~~~il~~~~~----~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~-~~~~~-~v~~~ll~~l~e 371 (757)
=.+..||..++.+...=+..-+. .+....|++.+.+-|.|.+-. -...++-+ ++ ...+. .-++.-
T Consensus 119 ~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge-ef~lfm~~--L~~lk~~~~k~~~a~------ 189 (460)
T KOG2213|consen 119 VGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE-EFTLFMDI--LASLKSLQTKAGEAR------ 189 (460)
T ss_pred hhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH-HHHHHHHH--HHhhhcccCCCCHHH------
Confidence 34556666666555544432221 122233444444444444433 11111111 11 01111 111111
Q ss_pred HhccCChhHHHHHHHHHHHHHHHHHHh--hhcCchhhhhhhhchhHHHHhh-hcccccccchhhhHHHHHHhccCCC-CC
Q 039884 372 RLRDKKISIRKKALLKLLEVYREYCKK--CCEGQMTVCDHFEQIPCKILML-CYDKDYKEFRPQNIERILVEDLFPV-LE 447 (757)
Q Consensus 372 R~rDKk~~VR~~A~~~L~~lY~~~~~~--~~~~~~~~~~~~~wIP~~il~~-~y~~d~~~~r~~~ve~~l~e~LlP~-~~ 447 (757)
|..|+.....-..- ....+....++| |-+..+-. ||.++..- +.-++ .+++.++|. ++
T Consensus 190 -------------lqeLa~~~e~~a~ldaf~~sD~d~VdRf--isCl~~AvPfFargapS--skf~~-y~n~~~ip~~fd 251 (460)
T KOG2213|consen 190 -------------LQELAEEQEGLADLDAFNVSDADYVDRF--ISCLLMAVPFFARGAPS--SKFVE-YLNKHIIPHHFD 251 (460)
T ss_pred -------------HHHHHHHHhhhhccCcccCCChHHHHHH--HHHHHHhhhhhhcCCch--hHHHH-HHHhhhcccccc
Confidence 33333333221110 111122222222 22222222 34444332 22455 778899998 54
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhhC--CCchH----HHHHHHHHHHHHHhhCCC
Q 039884 448 --VEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKG--SCHDE----THEQMKNSFVKMSASFPD 519 (757)
Q Consensus 448 --~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~~~~~~~l~~~~~~~~--~~~~~----~~~kl~~~i~~ls~~fpd 519 (757)
+++|--.++..+..+.... ...+..+. +...+++-.+|-. .+.++ -...+....+++....||
T Consensus 252 kl~e~rkL~lLK~lAEMss~t-----taq~a~q~----Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg~k~pn 322 (460)
T KOG2213|consen 252 KLTEERKLDLLKALAEMSSYT-----TAQAARQM----LPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLGHKKPN 322 (460)
T ss_pred cchHHHHHHHHHHHHHhCccc-----hHHHHHHH----HHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 5666666666555444322 11111222 3333444333311 12222 235777888999999999
Q ss_pred cchHHHHHHHHH
Q 039884 520 PSKAEGCFQRLN 531 (757)
Q Consensus 520 ~~ka~~~l~~f~ 531 (757)
.+++..+-+++-
T Consensus 323 ~t~ak~d~K~L~ 334 (460)
T KOG2213|consen 323 FTNAKCDAKKLK 334 (460)
T ss_pred hhhhhcchhhhc
Confidence 999998877664
No 145
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=51.43 E-value=4.4e+02 Score=30.50 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=131.5
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhc-CCChhHHHHHH
Q 039884 96 CPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINE-ETSLPLLEVVL 174 (757)
Q Consensus 96 ~~~f~~~~~lLe~la~vks~vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E-~~~~~lld~Il 174 (757)
.+.+.+.+.++.++-+..+..+ .++-+..|-+..+.+.+ ....+.....-+.++..+|.= .+|.+-+..++
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~---~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i 219 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICK---STSSEDDIEACLSVLDAIITYGDIPSESLSPCI 219 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHH
Confidence 3456666666666655554433 33444444444445433 333333334456666666663 34443333333
Q ss_pred HHhhc--cccCCcchHHHHHHHHHh-hchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHH-HHhhc----Cch---h
Q 039884 175 WNLVK--QEKDSPYAASQLAVSVIR-NCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIF-KIFQC----SPQ---M 243 (757)
Q Consensus 175 ~~l~~--~~~~~~~~a~~lA~~vi~-~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~-el~~~----~P~---l 243 (757)
.-|-. .-.+-..++++.-++++. ..+...=..++.++.+--....+....++ -+-.++. -+|.. .|. -
T Consensus 220 ~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lR-GAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 220 EVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLR-GAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred HHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHh-hHHHHHHHHHhccccCCcceeccc
Confidence 22211 111334467787788874 34555555665555110000011111122 2222222 33443 333 3
Q ss_pred HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhc-CCCCchhhhcHHHHHHHHhhccC---C-------C------HhHHHH
Q 039884 244 LLAVIPNLIQELLVDQVDVRIKAVNLIGKICA-QPDNCLADRYPELFVEFLKRFSD---K-------S------AEVRLN 306 (757)
Q Consensus 244 L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs-~~~~~~~~~~~~~w~~fL~R~~D---~-------s------~~VR~~ 306 (757)
...|+|.+..=|++.++-+=...+.++-++|. .-+. .-....|..++.-+.. . . ..++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~---~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR---ELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSN 375 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh---hhcccCchHHHHHHHHHHhhccccccccccccchHHHHHH
Confidence 33599999999999988888888888888884 2221 1234566666544321 0 1 334444
Q ss_pred HHHHhHH---HHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCH-------HHHHHHHHHhcc
Q 039884 307 ALRCAKA---CYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPE-------KLISEATERLRD 375 (757)
Q Consensus 307 ~v~~~~~---il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~-------~ll~~l~eR~rD 375 (757)
|-+.+.. .+..+...--..++.+.+.+...--.+..-.-++ + ..+.. ..-++ .+++... -|+
T Consensus 376 ~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl--~---~~~~~~~Ps~~~W~~n~~~ll~~F~--~~~ 448 (464)
T PF11864_consen 376 LHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVL--F---YEERSCSPSNPDWLDNLQKLLDRFY--NRD 448 (464)
T ss_pred HHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHH--H---HHhcccCCCChHHHHHHHHHHHHHh--CCC
Confidence 4333322 1211111111234555555444333333333222 1 11111 11121 3344443 588
Q ss_pred CChhHHHHHHHHHHH
Q 039884 376 KKISIRKKALLKLLE 390 (757)
Q Consensus 376 Kk~~VR~~A~~~L~~ 390 (757)
+++.||-.|++.+-+
T Consensus 449 ~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 449 RRSEVRIKALDVLEE 463 (464)
T ss_pred CCchHHHHHHHHHhh
Confidence 999999999988754
No 146
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.16 E-value=31 Score=40.43 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=64.7
Q ss_pred ccCCCHhHHHHH-HHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC-------------
Q 039884 296 FSDKSAEVRLNA-LRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV------------- 361 (757)
Q Consensus 296 ~~D~s~~VR~~~-v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v------------- 361 (757)
.+|+++-.|..= ...+-.+.- +. + ..-+-..|.--..|.++.||.+||.++.=+.+.+.+.+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~G-Tg--n-~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~ 600 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVG-TG--N-LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNF 600 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhc-CC--c-chhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccch
Confidence 468899999853 333333332 11 1 22344555667899999999999998755544444321
Q ss_pred ------------------CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 362 ------------------PEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 362 ------------------~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+...+..+--.|.|-.--||+-||.++|.+--..
T Consensus 601 hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 601 HVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred hhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 2455666667788999999999999999987653
No 147
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=50.27 E-value=3.2e+02 Score=28.52 Aligned_cols=198 Identities=16% Similarity=0.150 Sum_probs=100.4
Q ss_pred CcchhhHHHHHHHHHHHHhhcC-CChh-HHHHHHHHhhccccCCcchHHHHHHHHHhh---chhhhhHHHHHHhhhhccC
Q 039884 143 EPHLSSLTNHMLSTMTHIINEE-TSLP-LLEVVLWNLVKQEKDSPYAASQLAVSVIRN---CAEKLEPFVCGFLTSCFLD 217 (757)
Q Consensus 143 ~~~~~~v~~~m~~Il~~vI~E~-~~~~-lld~Il~~l~~~~~~~~~~a~~lA~~vi~~---~~~~l~~~i~~~~~~~~~~ 217 (757)
++.++++...++..|-.+-.-. +..+ ++.+| ..+...++. .++.++-++... ..+..-|.++.++......
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L-~~L~~~~~~---~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTL-VSLVEQGSL---ELRYVALRLLTLLWKANDRHFPFLQPLLLLLILR 86 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHH-HHHHcCCch---hHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 4555566666666666665443 3333 34433 355544332 222222222211 1222226666665553322
Q ss_pred CC--cc-ccchHHHH---HHHHHHHhhcCchhHHhhHHhhhhhh-cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHH
Q 039884 218 RD--AV-EGDLKEFY---HEIIFKIFQCSPQMLLAVIPNLIQEL-LVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFV 290 (757)
Q Consensus 218 ~~--~~-~~~l~~~~---~eli~el~~~~P~lL~~ViP~l~~eL-~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~ 290 (757)
.. .. +....+.. ..-+.++.+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~ 162 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWK 162 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHH
Confidence 11 11 11111111 12345666666665555777777777 7999999999999999999543 345567999
Q ss_pred HHHhhc-cCCCHhHHHHHHHHhH---HHHhcCC-CcchHHHHHHHHHHhhcCCCh-------hHHHHHHH
Q 039884 291 EFLKRF-SDKSAEVRLNALRCAK---ACYLGGP-FRKESREILAALESRLLDFDD-------RVRTEAVI 348 (757)
Q Consensus 291 ~fL~R~-~D~s~~VR~~~v~~~~---~il~~~~-~~~~~~ei~~~L~~rL~D~De-------kVR~aaV~ 348 (757)
.-.+++ .|..|.|=..+.+... ..-..+. ......+++..+-+-....|. +||..|+.
T Consensus 163 vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~ 232 (234)
T PF12530_consen 163 VLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFE 232 (234)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHh
Confidence 999988 3333433332222222 1111111 112234556666666666663 45555544
No 148
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.76 E-value=5.4e+02 Score=30.71 Aligned_cols=209 Identities=18% Similarity=0.197 Sum_probs=136.1
Q ss_pred hHHHHHHHHhhccccCCcc----hHHHHHHHHHhhchhhhhHHHHHHhhhhc-------cCCCccccchHHHHHHHHHHH
Q 039884 168 PLLEVVLWNLVKQEKDSPY----AASQLAVSVIRNCAEKLEPFVCGFLTSCF-------LDRDAVEGDLKEFYHEIIFKI 236 (757)
Q Consensus 168 ~lld~Il~~l~~~~~~~~~----~a~~lA~~vi~~~~~~l~~~i~~~~~~~~-------~~~~~~~~~l~~~~~eli~el 236 (757)
.++.-++..|-.++-.... +.|++|+ +.+. .+-.||+.+. .+.+.+-++-.+-...+|.++
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK--v~k~------~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdI 155 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAK--VAKG------EVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDI 155 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHH--Hhcc------CcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHh
Confidence 3566667777665543222 3455554 2111 1222344332 233333333333334444444
Q ss_pred hh-cC-chhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHH
Q 039884 237 FQ-CS-PQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKAC 314 (757)
Q Consensus 237 ~~-~~-P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 314 (757)
.. -+ .=-|...||.|.+-+-.-++..|.-.+.-+--+.+.|+.+|..--|+++.-.+.-..|-+.+||..+=.+...+
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 33 22 12356789999999999999999999999999999999999999999999999999999999997664444444
Q ss_pred H---hcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC-CC--CHHHHHHHHHHhccCCh-hHHHHH
Q 039884 315 Y---LGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK-FV--PEKLISEATERLRDKKI-SIRKKA 384 (757)
Q Consensus 315 l---~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-~v--~~~ll~~l~eR~rDKk~-~VR~~A 384 (757)
+ .+.|+.-...+.++-+...+.-+++..+..|..-+.+...-..+ .+ -..++..+..-+-|+-. +++..|
T Consensus 236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHH
Confidence 4 35676533457889999999999999999998877666543222 11 22455555566666655 344444
No 149
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=48.17 E-value=2.4e+02 Score=31.86 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=77.3
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHH-HHHHHHhhccCCCH---hHHHHHHHHhHHHHhc--CCC
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPE-LFVEFLKRFSDKSA---EVRLNALRCAKACYLG--GPF 320 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~-~w~~fL~R~~D~s~---~VR~~~v~~~~~il~~--~~~ 320 (757)
.++.+..-|.+++..+|..|-+.+--+++.+.. .+..-. =-..|+-|.-|++. .=|.+.++.+..++.- .+.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~--l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEES--LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH--HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 444455467788899999999999999987531 211111 12345666655543 3477888888888765 332
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC
Q 039884 321 RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK 359 (757)
Q Consensus 321 ~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~ 359 (757)
+...-++.++-.-.-++||+.|..+++.+|+++..+++
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~ 141 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE 141 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH
Confidence 23456788888888899999999999999999987764
No 150
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.84 E-value=2.9e+02 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q 039884 324 SREILAALESRLLDFDDRVRTEAVIVACDLARSH 357 (757)
Q Consensus 324 ~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~ 357 (757)
...+.+.+...+.|++.-||.++-=++.++...+
T Consensus 153 ~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 153 FDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 3455666666667777777777766666666544
No 151
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=47.42 E-value=1e+02 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 039884 324 SREILAALESRLLDFDDRVRTEAVIVACDL 353 (757)
Q Consensus 324 ~~ei~~~L~~rL~D~DekVR~aaV~~i~~l 353 (757)
..+|.+.|.+||.|.+..|.+.|.+.+.-+
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l 65 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHL 65 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 456677777777777766766666665433
No 152
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.25 E-value=78 Score=37.33 Aligned_cols=126 Identities=25% Similarity=0.275 Sum_probs=78.0
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHh
Q 039884 255 LLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESR 334 (757)
Q Consensus 255 L~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~r 334 (757)
.+..|.++|..||-.+|-..-....-+..+- +.|.... .+-||... -.+-+|..++.-..-+ ++.|...
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~lv~tv-----elLs~sh--N~hVR~g~-AvaLGiacag~G~~~a---~diL~~L 629 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDLLVGTV-----ELLSESH--NFHVRAGV-AVALGIACAGTGDKVA---TDILEAL 629 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcchhhHHH-----HHhhhcc--chhhhhhh-HHHhhhhhcCCccHHH---HHHHHHH
Confidence 3445788888888888876544332222211 2233222 46788764 4455555555432333 4455566
Q ss_pred hcCCChhHHHHHHHHHHHhh-hhccCCCCH--HHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 335 LLDFDDRVRTEAVIVACDLA-RSHLKFVPE--KLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 335 L~D~DekVR~aaV~~i~~l~-~~~~~~v~~--~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
..|+.+-||.+|+.++.=+- ..+.++.|. .+.+.+-.-+-||+.+ ++..||..-...
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~----glaklGA~laqG 689 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES----GLAKLGAVLAQG 689 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh----HHHHHHHHHHhh
Confidence 78999999999999987665 345555554 7788887888888754 555566555443
No 153
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.41 E-value=4.2e+02 Score=29.60 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=82.1
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCC--chhh---hcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchH-HHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDN--CLAD---RYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKES-REI 327 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~--~~~~---~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~-~ei 327 (757)
.|.+.+..+|..|+.++|..+...+. +++- .-+.+...+- .|.+..+|.+.+=+....+.+++.+... .-+
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 88999999999999999999875321 1111 1123333332 6777888888877777777888742110 011
Q ss_pred --HHHHHHhhcCCChh--HHHHHHHHHHHhhhhccC---CCCH-HHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 328 --LAALESRLLDFDDR--VRTEAVIVACDLARSHLK---FVPE-KLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 328 --~~~L~~rL~D~Dek--VR~aaV~~i~~l~~~~~~---~v~~-~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
...|.+-+.+.+.. .+..|+.-+..+...... .++. .....+-....==...++..|+.++-.+-.
T Consensus 209 ~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 209 NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 56788888885444 445566667777655552 2222 122222223333346778877777666444
No 154
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=46.38 E-value=38 Score=30.27 Aligned_cols=56 Identities=25% Similarity=0.190 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhhhhccCCCCH---HHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH
Q 039884 340 DRVRTEAVIVACDLARSHLKFVPE---KLISEATERLRDKKISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 340 ekVR~aaV~~i~~l~~~~~~~v~~---~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~ 396 (757)
..-|.++|..+|.+....+-.+|+ ++|..|+....| ...||+.+=+.|++.++.+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 456899999999999888877875 888899999997 78899999999999999873
No 155
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.49 E-value=59 Score=36.32 Aligned_cols=137 Identities=22% Similarity=0.216 Sum_probs=93.7
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhc-CCCcchHHHH----
Q 039884 253 QELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLG-GPFRKESREI---- 327 (757)
Q Consensus 253 ~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~~~~ei---- 327 (757)
.+..+|.+.+|-.||..+-.+-+..+....-.+.... .-|-| --++..+|..| .+-+++.+ +.+.+-.+++
T Consensus 133 ~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL-~pltr-Lakskdirvqr--natgaLlnmThs~EnRr~LV~aG 208 (550)
T KOG4224|consen 133 LQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL-EPLTR-LAKSKDIRVQR--NATGALLNMTHSRENRRVLVHAG 208 (550)
T ss_pred HHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch-hhhHh-hcccchhhHHH--HHHHHHHHhhhhhhhhhhhhccC
Confidence 3677899999999999999886653211111111111 22334 44577789998 33344544 2232333444
Q ss_pred -HHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 328 -LAALESRLLDFDDRVRTEAVIVACDLARSHL-----KFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 328 -~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
++.|-..+.-.|..||.-++.+|..++...- --..+.+...+.+.|+|-..+|...|-..|+.+-.
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 3567788888999999999999988885332 23456799999999999999999999999988865
No 156
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=45.16 E-value=37 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.184 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
..++.|.+.|.+.|+.||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35788888899999999999999997764
No 157
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.08 E-value=1e+02 Score=29.28 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--CCCCHHHHHHHHHHhccCCh-h-HHHHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL--KFVPEKLISEATERLRDKKI-S-IRKKALLKLLEVYRE 394 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~--~~v~~~ll~~l~eR~rDKk~-~-VR~~A~~~L~~lY~~ 394 (757)
....+.+.+|.+||...++.|=+-|+..+..+... .| ...+.+.+..+...+.++.. . ||+.++..+..-+..
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999888777642 22 34577888888877777754 2 898888877776665
Q ss_pred H
Q 039884 395 Y 395 (757)
Q Consensus 395 ~ 395 (757)
+
T Consensus 113 f 113 (133)
T smart00288 113 F 113 (133)
T ss_pred H
Confidence 5
No 158
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.85 E-value=9.2e+02 Score=32.28 Aligned_cols=254 Identities=18% Similarity=0.237 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcC--CCh----hHHHHHHHHhhccccCCcchHHHHH-HHHHhh
Q 039884 126 LVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEE--TSL----PLLEVVLWNLVKQEKDSPYAASQLA-VSVIRN 198 (757)
Q Consensus 126 li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~--~~~----~lld~Il~~l~~~~~~~~~~a~~lA-~~vi~~ 198 (757)
|+-.||+-=||- ..+|...|.+|=..+|.++ +.. +++|.+|-++....=. ...|.-+| .++++.
T Consensus 999 LIPrLyRY~yDP--------~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewR-VReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 999 LIPRLYRYQYDP--------DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWR-VREASCLALADLLQG 1069 (1702)
T ss_pred hhHHHhhhccCC--------cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHcC
Confidence 666666655551 2589999999999999984 233 3444444444332111 12344444 445554
Q ss_pred ch-hhhhHHHHHHhhhhccCCCccccchHHHHH-------HHHHHHhh-----cCchhHHhhHHhhhhh-hcCCChHHHH
Q 039884 199 CA-EKLEPFVCGFLTSCFLDRDAVEGDLKEFYH-------EIIFKIFQ-----CSPQMLLAVIPNLIQE-LLVDQVDVRI 264 (757)
Q Consensus 199 ~~-~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~-------eli~el~~-----~~P~lL~~ViP~l~~e-L~sd~~~~R~ 264 (757)
.. +++.--+-.+...++.-.|.....+++-++ .++..+.. -+-+.+.+++|.|=++ ..++-.++|.
T Consensus 1070 ~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1070 RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 32 222222212221111000111111111122 22222221 3456888999987554 3488899999
Q ss_pred HHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhH------HH-----HHHHHhHHHH-hcCCCcchHHHHHHHHH
Q 039884 265 KAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEV------RL-----NALRCAKACY-LGGPFRKESREILAALE 332 (757)
Q Consensus 265 ~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~V------R~-----~~v~~~~~il-~~~~~~~~~~ei~~~L~ 332 (757)
.+..++-+|.-..|..+.-..|.+--.++.-+.-.++.| |. +.++.+..=. .+.| .++.+.
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp-------mmeTi~ 1222 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP-------MMETIN 1222 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc-------HHHHHH
Confidence 999999999877665555556666667777666666655 21 1122111111 1111 223333
Q ss_pred HhhcCCChhHHHH--------------------HHHHHHHhhhhcc---CCCCHHHHHHHHHHhccCChhHHHHHHHHHH
Q 039884 333 SRLLDFDDRVRTE--------------------AVIVACDLARSHL---KFVPEKLISEATERLRDKKISIRKKALLKLL 389 (757)
Q Consensus 333 ~rL~D~DekVR~a--------------------aV~~i~~l~~~~~---~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~ 389 (757)
+++.-.|..|=-+ +-..|+.+...-. .--++.+++.+.-=.+||+..||+..-..+|
T Consensus 1223 ~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1223 KCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMG 1302 (1702)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHH
Confidence 4444444333222 2233444443322 2235799999999999999999999999999
Q ss_pred HHHHHH
Q 039884 390 EVYREY 395 (757)
Q Consensus 390 ~lY~~~ 395 (757)
.+.+..
T Consensus 1303 ~L~k~S 1308 (1702)
T KOG0915|consen 1303 YLAKFS 1308 (1702)
T ss_pred HHHhcC
Confidence 999854
No 159
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=44.46 E-value=97 Score=31.43 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=51.6
Q ss_pred hhcCchhHH--hhHHhhhhhhcCCChHHHHHHHHHHHHHhcC-CCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHH
Q 039884 237 FQCSPQMLL--AVIPNLIQELLVDQVDVRIKAVNLIGKICAQ-PDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKA 313 (757)
Q Consensus 237 ~~~~P~lL~--~ViP~l~~eL~sd~~~~R~~At~llG~mfs~-~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 313 (757)
|++.|+-|- ..+|.+-+-|+-.+.+.|..|.+.+-+|+.. .+....-.=|.+-..--.-.+-++++|...+++....
T Consensus 27 W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~ 106 (183)
T PF10274_consen 27 WKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQ 106 (183)
T ss_pred EecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566676665 4899999999999999999999999999876 3322233333333333344444445555555555444
Q ss_pred HHhc
Q 039884 314 CYLG 317 (757)
Q Consensus 314 il~~ 317 (757)
++.+
T Consensus 107 Lv~~ 110 (183)
T PF10274_consen 107 LVTS 110 (183)
T ss_pred HHHh
Confidence 4433
No 160
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.21 E-value=1.2e+02 Score=29.51 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh---hcc--CCCCHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLAR---SHL--KFVPEKLISEATERLRD-KKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~---~~~--~~v~~~ll~~l~eR~rD-Kk~~VR~~A~~~L~~lY~~~ 395 (757)
....+.+.+|.+|+...+.+|=+.|+..+..+.+ ..| ...+.+.+..+...+.+ ....||...+..+-.-...+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 4477999999999999999999999998877763 223 46688888888777777 57889999888776644433
No 161
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=43.63 E-value=35 Score=25.14 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=26.2
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHH
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKI 273 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~m 273 (757)
+++|.|-.-|.+++..+|..|+-.+|.+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999987
No 162
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.00 E-value=87 Score=37.39 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHhccCChhHHHH
Q 039884 305 LNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPEKLISEATERLRDKKISIRKK 383 (757)
Q Consensus 305 ~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~~ll~~l~eR~rDKk~~VR~~ 383 (757)
..+|+||...+...|.-...+.|+.++-....|++.-||...|.+|..+...+= -.++-.+.+.+..-++-++..|+-+
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~ 382 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPD 382 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhh
Confidence 357788888888888877788999999999999999999999999988875432 3344555555555555566666665
Q ss_pred HHHHHHHH
Q 039884 384 ALLKLLEV 391 (757)
Q Consensus 384 A~~~L~~l 391 (757)
++..+..+
T Consensus 383 ~~~~~lsL 390 (704)
T KOG2153|consen 383 MITTFLSL 390 (704)
T ss_pred HHHHHHhc
Confidence 55555544
No 163
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.89 E-value=7.4e+02 Score=30.63 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhcC--CCCchhhhcHHHHHHHH--hhccCCCHhHHHHHHHHhHHHHhc---CCCc-chHHHHHHHHH
Q 039884 261 DVRIKAVNLIGKICAQ--PDNCLADRYPELFVEFL--KRFSDKSAEVRLNALRCAKACYLG---GPFR-KESREILAALE 332 (757)
Q Consensus 261 ~~R~~At~llG~mfs~--~~~~~~~~~~~~w~~fL--~R~~D~s~~VR~~~v~~~~~il~~---~~~~-~~~~ei~~~L~ 332 (757)
.++..+.+++|-|--+ |+ .+.+++-++..+-. -|.+..+..||.+...+.-+.+.- |=.. .++.-|+..++
T Consensus 145 ~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc 223 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC 223 (859)
T ss_pred HHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee
Confidence 4889999999999643 33 45566666666555 378889999999988877766642 1121 22335688888
Q ss_pred HhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 333 SRLLDFDDRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 333 ~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
+-=.-+|++||.+|..+++.+..--. ....+.++..-..+|+.-+.+|--.||+--+.+
T Consensus 224 Eatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 224 EATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999874333 345566777778999999999988888754433
No 164
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=42.53 E-value=5.6e+02 Score=29.10 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=117.6
Q ss_pred cchhHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhh----cC--CChh--
Q 039884 97 PFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIIN----EE--TSLP-- 168 (757)
Q Consensus 97 ~~f~~~~~lLe~la~vks~vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~----E~--~~~~-- 168 (757)
..|.++..+|..++..+.+. +.++..+.+.+..... .+........++..+..+++ +. ...+
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~-------~~~~~~ll~kl~~~~~---~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y 86 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQIL-------ETLSIRLLNKLSIVCQ---SESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWY 86 (415)
T ss_pred hHHHHHHHHHHHHHCChhHH-------HHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 45666666666666655542 2455566666655543 11122233333333333333 32 1111
Q ss_pred ----HHHHHHHHhhccccCCc---c----hHHHHHHHHHhhchhhhhHHHHHHhhhhcc----------CCCc---cccc
Q 039884 169 ----LLEVVLWNLVKQEKDSP---Y----AASQLAVSVIRNCAEKLEPFVCGFLTSCFL----------DRDA---VEGD 224 (757)
Q Consensus 169 ----lld~Il~~l~~~~~~~~---~----~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~----------~~~~---~~~~ 224 (757)
++..+++.......... + ....+..-+++.+...-+..+.+-+.+... +... ....
T Consensus 87 ~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~ 166 (415)
T PF12460_consen 87 FHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSR 166 (415)
T ss_pred HHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccccccccc
Confidence 44444544444332211 1 234555666676666655544433333222 1110 0111
Q ss_pred hHHHHHHHHHHHhhcCc-hhHHhhHHhhhhh-hcCCChHHHHHHHHHHHHHhcC-CCCchhhhcHHHHHHHHhhc-cCCC
Q 039884 225 LKEFYHEIIFKIFQCSP-QMLLAVIPNLIQE-LLVDQVDVRIKAVNLIGKICAQ-PDNCLADRYPELFVEFLKRF-SDKS 300 (757)
Q Consensus 225 l~~~~~eli~el~~~~P-~lL~~ViP~l~~e-L~sd~~~~R~~At~llG~mfs~-~~~~~~~~~~~~w~~fL~R~-~D~s 300 (757)
+---+..++-.+.+-+. .-...++..+... +..++...|..+.+.++=+.-. ++.+ ...+....++... .+..
T Consensus 167 ~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~ 243 (415)
T PF12460_consen 167 LVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSED 243 (415)
T ss_pred HHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCC
Confidence 11123445555554333 1122244444444 3456699999999999988754 2221 2223333343333 2233
Q ss_pred HhHHHH----HHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 039884 301 AEVRLN----ALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 301 ~~VR~~----~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~ 355 (757)
++-|.. |+..+++.++.+. ..+.++++.|...|-| +++...|.+++.-+..
T Consensus 244 ~~~~~~~~~~~~Wi~KaLv~R~~--~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 244 SELRPQALEILIWITKALVMRGH--PLATELLDKLLELLSS--PELGQQAAKAFGILLS 298 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhc
Confidence 333332 3345566665443 2366888888888877 7788888888866553
No 165
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=41.18 E-value=39 Score=27.78 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=29.2
Q ss_pred HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhH
Q 039884 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRV 342 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekV 342 (757)
+.+| ++||..+.|...|+ + .+|...|.++-+||||.|
T Consensus 3 ~~~r-k~VQ~iKEiv~~hs--e--~eIya~L~ecnMDpnea~ 39 (60)
T PF06972_consen 3 AASR-KTVQSIKEIVGCHS--E--EEIYAMLKECNMDPNEAV 39 (60)
T ss_pred hHHH-HHHHHHHHHhcCCC--H--HHHHHHHHHhCCCHHHHH
Confidence 3445 45799999888766 2 389999999999999865
No 166
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=41.18 E-value=2.2e+02 Score=31.60 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=93.0
Q ss_pred hHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh-----hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhc
Q 039884 243 MLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA-----DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLG 317 (757)
Q Consensus 243 lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~-----~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~ 317 (757)
+.-+.+|-|.--|.+|+..+..+|.+.+|.++-..+.|-+ ..+..++...+.-.-.-+-+|--+.++..+.+-..
T Consensus 79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 4445788889999999999999999999999987654433 23566777777777777788888888877765542
Q ss_pred CCCcch---HHHHHHHHHHh--hcCCChhHHHHHHHHHHHhhh---hccCCCCH-HHHHHH-HHHhccCChhHHHHHHHH
Q 039884 318 GPFRKE---SREILAALESR--LLDFDDRVRTEAVIVACDLAR---SHLKFVPE-KLISEA-TERLRDKKISIRKKALLK 387 (757)
Q Consensus 318 ~~~~~~---~~ei~~~L~~r--L~D~DekVR~aaV~~i~~l~~---~~~~~v~~-~ll~~l-~eR~rDKk~~VR~~A~~~ 387 (757)
|..-+ .+++.+-++-| -.-..+-+|..+...|.++.. ...+.+.. -++..+ +|...-|..-||-.+++.
T Consensus 159 -paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciEl 237 (524)
T KOG4413|consen 159 -PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIEL 237 (524)
T ss_pred -HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence 21100 11222222222 233455678877777766542 22233333 233332 333444778899888887
Q ss_pred HHHHHH
Q 039884 388 LLEVYR 393 (757)
Q Consensus 388 L~~lY~ 393 (757)
...+-.
T Consensus 238 vteLae 243 (524)
T KOG4413|consen 238 VTELAE 243 (524)
T ss_pred HHHHHH
Confidence 665543
No 167
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=40.70 E-value=1.1e+02 Score=34.58 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=73.7
Q ss_pred hcHHHHHHHHhhcc----CCCHhHHHHHHHHhHHHHhcCCCcchHHHH-HHHHHHhhcCCChhH---HHHHHHHHHHhhh
Q 039884 284 RYPELFVEFLKRFS----DKSAEVRLNALRCAKACYLGGPFRKESREI-LAALESRLLDFDDRV---RTEAVIVACDLAR 355 (757)
Q Consensus 284 ~~~~~w~~fL~R~~----D~s~~VR~~~v~~~~~il~~~~~~~~~~ei-~~~L~~rL~D~DekV---R~aaV~~i~~l~~ 355 (757)
.|.-.|..|..|.. +-+.+||.+.......++.+..+.....++ ++.+--|..|.|-+. |.+|.+-+..+..
T Consensus 18 ~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 18 KYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 34456777777653 455999999999998777543221111111 344555666665544 7778777766654
Q ss_pred h--ccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 356 S--HLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 356 ~--~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
- ..+.+|..+.+++.--.-+..-..|..|+++|+++--
T Consensus 98 ~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l 137 (371)
T PF14664_consen 98 IKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELAL 137 (371)
T ss_pred hcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh
Confidence 3 5677899888877766666666799999999999865
No 168
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.64 E-value=1.9e+02 Score=33.61 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=67.6
Q ss_pred hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh-ccCCCHhHHHHHHHHhHHHHhcCCC
Q 039884 242 QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKR-FSDKSAEVRLNALRCAKACYLGGPF 320 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R-~~D~s~~VR~~~v~~~~~il~~~~~ 320 (757)
.+|.+|+-.+.+.....+...|..|.+.+|++.+.-+....+.++..-.+-++- .-|-..+|=.+.+++..-++..-..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 788899999999999999999999999999998873333333333333333222 2333355555554444433322111
Q ss_pred ---cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 039884 321 ---RKESREILAALESRLLDFDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 321 ---~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~ 355 (757)
...--+|.-.++.-.-|-++++|.+|...+..+++
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 11122344445555666666666666666655553
No 169
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.80 E-value=1e+03 Score=30.38 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhhc-hhhhhHHHHHHhhhhccCCCccc---cchHH------HHHHHHHHHhhcCc--hhHH-hhHHhhhh
Q 039884 187 AASQLAVSVIRNC-AEKLEPFVCGFLTSCFLDRDAVE---GDLKE------FYHEIIFKIFQCSP--QMLL-AVIPNLIQ 253 (757)
Q Consensus 187 ~a~~lA~~vi~~~-~~~l~~~i~~~~~~~~~~~~~~~---~~l~~------~~~eli~el~~~~P--~lL~-~ViP~l~~ 253 (757)
+|..+--..+++- .++|++ +-.|..+++....+.+ .+-++ -...|..-|-+-+| +.+- -+.+.+-.
T Consensus 391 Aa~~~l~~~~~KR~ke~l~k-~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETLPK-ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHhcchhhhhh-HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 3444444444444 444554 4467777665222211 11111 13345556666777 4444 36677777
Q ss_pred hhcCCChHHHHHHHHHHHHHhcC---CCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch-----HH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQ---PDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE-----SR 325 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~---~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-----~~ 325 (757)
++++.---.|.+|...+|+.=+. .+.++.+.+..+.++++. |.+-+||++.+=+...++.+.+..++ ..
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp 546 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRVEAALALQSFISNQEQADEKVSAHVP 546 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence 88999999999999999987432 246788889899888876 99999999987777777766553211 23
Q ss_pred HHHHHHHHhhcCCChhHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAV 347 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV 347 (757)
++++.|-+-..+++-.+=-.+.
T Consensus 547 ~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 547 PIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred HHHHHHHHHHHhcchhHHHHHH
Confidence 4444444444444444333333
No 170
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.49 E-value=2.8e+02 Score=34.51 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=108.1
Q ss_pred hhh-hhcChhhHHHHHHhhhcCcccCchhhHHHHHHHHHHHhhCCcCCc--ccHHHHHHHHhhcc-CCchHHHHHHHhhC
Q 039884 581 KCL-YIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLR--GSEVQFQKLLERNG-LINDKLIEVLAKAG 656 (757)
Q Consensus 581 r~s-~~~n~s~v~~ll~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~--~~~~~L~~~l~d~~-~~~~~~l~~l~k~~ 656 (757)
|++ ..++.-.|+.+++.+..-. --+..+-+.+=|+.||+.+|.-.- +.+......|.==. ...-.++++.++.|
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~Ie--yiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIE--YIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred chhheeecccchHHHHHhhhhhh--hhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 7777778888888765321 013456778888999999996332 22222222211000 13557899999999
Q ss_pred CccccCcC----cHHHHHHHHHhcCCcHHHHHHHHHHHhhcCCc--hhhHHH-----HHHHHHHhcc------CCCCCcc
Q 039884 657 PHISIKYS----DIYPLLERLCLEGTRAQSKHAVSAIASLSGAS--EQFVFM-----ELCKGLVDSL------HCGRNIP 719 (757)
Q Consensus 657 ~~~~~~~~----~~~~~L~~~a~~Gtp~qAK~Av~~l~~~~~~~--~~~~~~-----~l~~~l~~~l------~~~~~l~ 719 (757)
..+..+.. +..|.|..+=.+-+.+---++.-|++.+...- +.+.|. +|++.+..-+ -..+-+.
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 98887654 34788998888888777777766666553331 112222 4444443322 2344666
Q ss_pred hhHhHHHHHHhhChhhhhhhhhhHHHHHHHhccc
Q 039884 720 TVLQSLGCIAQYSVSAFESQSEDITRYIYENLIK 753 (757)
Q Consensus 720 t~L~sL~~ia~~~p~~fe~~~~~I~~flik~vL~ 753 (757)
.++-.|.-+.--+|..|..-.+.=+.+.++.+|.
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 7788888888888999998888767777777664
No 171
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=36.22 E-value=3.9e+02 Score=26.24 Aligned_cols=142 Identities=19% Similarity=0.165 Sum_probs=77.0
Q ss_pred hhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccC-----CCHhHHHHHHHHh
Q 039884 237 FQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSD-----KSAEVRLNALRCA 311 (757)
Q Consensus 237 ~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D-----~s~~VR~~~v~~~ 311 (757)
|.-.|++|.-.+..|..| .+..+|..|.+++|-+ |+=+. -.++..-+...+ ......-..+ ..
T Consensus 5 Y~~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGil-GALDP-------~~~k~~~~~~~~~~~~~~~~~~~~~~l-~~ 72 (160)
T PF11865_consen 5 YLDYPELLDILLNILKTE---QSQSIRREALRVLGIL-GALDP-------YKHKSIQKSLDSKSSENSNDESTDISL-PM 72 (160)
T ss_pred HHHhHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhc-cccCc-------HHHhcccccCCccccccccccchhhHH-hh
Confidence 556788888888887777 3499999999999998 43111 111111111111 1111111110 00
Q ss_pred HHHHhcCCCcch--HHHHHHHHHHhhcCCChhHHH-HHHHHHHHhhh-hccCCCC--HHHHHHHHHHhccCChhHHHHHH
Q 039884 312 KACYLGGPFRKE--SREILAALESRLLDFDDRVRT-EAVIVACDLAR-SHLKFVP--EKLISEATERLRDKKISIRKKAL 385 (757)
Q Consensus 312 ~~il~~~~~~~~--~~ei~~~L~~rL~D~DekVR~-aaV~~i~~l~~-~~~~~v~--~~ll~~l~eR~rDKk~~VR~~A~ 385 (757)
....|+.++ ..-++++|.+-|.|+--.--. ++|.++..+-+ ...+.++ +.++-.+..-+|.-....|+.-.
T Consensus 73 ---~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 73 ---MGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred ---ccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHH
Confidence 011122222 234466666666666544333 35666544442 2223444 36666666777766668888888
Q ss_pred HHHHHHHH
Q 039884 386 LKLLEVYR 393 (757)
Q Consensus 386 ~~L~~lY~ 393 (757)
..|+.+.+
T Consensus 150 ~qL~~lv~ 157 (160)
T PF11865_consen 150 QQLADLVS 157 (160)
T ss_pred HHHHHHHH
Confidence 88888765
No 172
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=35.41 E-value=1.1e+03 Score=30.32 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=78.4
Q ss_pred hhhhcCCChHHHHHHHHHHHHH-hcCCCCchhhhcH-HHHHHHHhhccCCC--------HhHHHHHHHHhHHHHhcCCCc
Q 039884 252 IQELLVDQVDVRIKAVNLIGKI-CAQPDNCLADRYP-ELFVEFLKRFSDKS--------AEVRLNALRCAKACYLGGPFR 321 (757)
Q Consensus 252 ~~eL~sd~~~~R~~At~llG~m-fs~~~~~~~~~~~-~~w~~fL~R~~D~s--------~~VR~~~v~~~~~il~~~~~~ 321 (757)
++.-.-||..+=..||=-+|.- ||+.-.--...|+ ++|.+||.-+--.. ++||+..-+.-.+.+. -
T Consensus 268 ~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k~~l~~~~----w 343 (1697)
T KOG3687|consen 268 EDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKKYELQVVA----W 343 (1697)
T ss_pred hhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHhcCccceEEEEEeehhhHHHHHHHHHHHH----H
Confidence 3444456766666777777653 3443211123444 37778887665533 3455444332221110 0
Q ss_pred chHHHHHHHHHHhhcCCChh-HHH---HHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChh----------------HH
Q 039884 322 KESREILAALESRLLDFDDR-VRT---EAVIVACDLARSHLKFVPEKLISEATERLRDKKIS----------------IR 381 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~Dek-VR~---aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~----------------VR 381 (757)
+..-+|+..+-..+.=.|+- .|. .-...+.++...+=-+.+.+-+-.+.||+-|+++. +|
T Consensus 344 D~il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~sVlnli~Yr~~~V~A~R 423 (1697)
T KOG3687|consen 344 DILLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSVLNLISYRAQSVHAAR 423 (1697)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchHHHHHHHHHhhhccCcCC
Confidence 11222222222222222221 111 11223334443332234555555666777777764 56
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchhh--hhhhhchhHHHHhhhcc
Q 039884 382 KKALLKLLEVYREYCKKCCEGQMTV--CDHFEQIPCKILMLCYD 423 (757)
Q Consensus 382 ~~A~~~L~~lY~~~~~~~~~~~~~~--~~~~~wIP~~il~~~y~ 423 (757)
-.+++.|..+-..++...+.++..+ .+.+..||. +.+.||+
T Consensus 424 ~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l-~nr~~ye 466 (1697)
T KOG3687|consen 424 DGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLL-INRQFYE 466 (1697)
T ss_pred chHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHh-hhhhhhH
Confidence 6777777777777766444443222 234555663 2445553
No 173
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=34.34 E-value=2.5e+02 Score=33.73 Aligned_cols=166 Identities=18% Similarity=0.169 Sum_probs=100.2
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHH--hcC-CCCchhhhcHHHHH---HH-HhhccCCCHhHHHHHHHHhH------HHHh
Q 039884 250 NLIQELLVDQVDVRIKAVNLIGKI--CAQ-PDNCLADRYPELFV---EF-LKRFSDKSAEVRLNALRCAK------ACYL 316 (757)
Q Consensus 250 ~l~~eL~sd~~~~R~~At~llG~m--fs~-~~~~~~~~~~~~w~---~f-L~R~~D~s~~VR~~~v~~~~------~il~ 316 (757)
....+|.+-+++.|..+.+-.--| ++. .+....++.-.++. .+ +.+. ++..+|.+|..+-+ .++.
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~--kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPI--KDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccccc--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888776532222 111 11222232222222 11 2233 34777888775544 3444
Q ss_pred cCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh--hcc--CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 317 GGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR--SHL--KFVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 317 ~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~--~~~--~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
+.+. ..++...|-+-++||+-.|-..+.-++|.+.. .++ +.+.-..+..+..-+.|+-+.+|+.+...| |
T Consensus 413 tg~~---~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L---r 486 (678)
T KOG1293|consen 413 TGLK---RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL---R 486 (678)
T ss_pred cCCc---cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---H
Confidence 4543 23678888888999999999999999999863 333 234446677888889999999998776655 4
Q ss_pred HHHHHhhhcCchhhhhhhhchhHHHHhhhcccccc
Q 039884 393 REYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYK 427 (757)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~ 427 (757)
+..+..- .+.-..-+..||...+. +|.+|++
T Consensus 487 ~l~f~~d---e~~k~~~~~ki~a~~i~-~l~nd~d 517 (678)
T KOG1293|consen 487 HLMFNCD---EEEKFQLLAKIPANLIL-DLINDPD 517 (678)
T ss_pred HHHhcch---HHHHHHHHHHhhHHHHH-HHHhCCC
Confidence 4444321 11222345778887664 4556654
No 174
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=34.15 E-value=8.8e+02 Score=28.99 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC
Q 039884 230 HEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ 276 (757)
Q Consensus 230 ~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~ 276 (757)
-.++..+++..|+.+.+-+|.+...|..-++..|.+ +..+--+++.
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Q 228 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQ 228 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHh
Confidence 356778999999999999999999999999887654 4455555554
No 175
>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 1", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=34.12 E-value=31 Score=35.14 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccC
Q 039884 227 EFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSD 298 (757)
Q Consensus 227 ~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D 298 (757)
-+||.+|.|+.+..|+.+..|+++--..|=..-...-..+..-+.+.||.+=+||.=+. -|++|..-..-
T Consensus 90 iyY~sllielCk~~P~~i~pv~~~air~ly~~l~~md~e~~~Rf~dWfS~hLSNF~f~W--~W~eW~~~~~l 159 (191)
T PF09088_consen 90 IYYHSLLIELCKLSPSAIPPVLGRAIRFLYRNLDSMDFELRDRFVDWFSHHLSNFGFQW--KWDEWVDDLEL 159 (191)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHGGGGB-HHHHHHHHHHHHHHHHTTTT-----GGGGGGGTTS
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCCcee--eHHHhhhhhhC
Confidence 38999999999999998888877765555444444445556667778887766776555 48899776643
No 176
>PHA00657 crystallin beta/gamma motif-containing protein
Probab=33.73 E-value=1.8e+02 Score=37.48 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHHHhhccc-cCCcchHHHHHHHH---HhhchhhhhHHHHHHhhhhccC--CCccccchH-HHHHHHHHHHhhcCc
Q 039884 169 LLEVVLWNLVKQE-KDSPYAASQLAVSV---IRNCAEKLEPFVCGFLTSCFLD--RDAVEGDLK-EFYHEIIFKIFQCSP 241 (757)
Q Consensus 169 lld~Il~~l~~~~-~~~~~~a~~lA~~v---i~~~~~~l~~~i~~~~~~~~~~--~~~~~~~l~-~~~~eli~el~~~~P 241 (757)
+|-.++...+.+. ++.+ -.-.+|+.+ +..-...+-+++..|.+..+.. .+.++++.+ ..--.+|-..-+++.
T Consensus 1915 vLg~lva~~L~~GD~dDe-D~EdlAkKla~~q~~yl~~~vv~vr~~~~aa~~~t~~~~~~~~yt~~~gl~li~~~~r~~~ 1993 (2052)
T PHA00657 1915 VLGYFLKDALTPGDSGDD-DPEKLAKKLLANQIDYLMGLMVVVREFGEAAKTVTGANDMGRDYTGPAGLRLIADVGRFAT 1993 (2052)
T ss_pred HHHHHHHhhcCCCCcCcC-CHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccccCcchhHHHHHHHHhhh
Confidence 4556666644433 3221 223344443 3334455667888888776532 222333221 112246666666665
Q ss_pred hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC
Q 039884 242 QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN 279 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~ 279 (757)
+.-.. .=|...|..||..+|++|+.|+.
T Consensus 1994 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 2021 (2052)
T PHA00657 1994 QTHQG----------EFDDAFRKAAVNVVGDLFGLPSA 2021 (2052)
T ss_pred hcccc----------chhHHHHHHHHHHhhhhccCcHH
Confidence 54433 22678899999999999999853
No 177
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.20 E-value=4e+02 Score=30.07 Aligned_cols=145 Identities=19% Similarity=0.168 Sum_probs=107.8
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCC--CCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQP--DNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE 323 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~--~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 323 (757)
.-+|.|-.-|.+.|.++|--+|..+|.+--.. ..-++++-|.+-.+...=..|-|+.|.++.--... ++.+ +.+.
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr-nlas--dt~Y 284 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR-NLAS--DTEY 284 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh-hhcc--cchh
Confidence 47888999999999999999999999984332 23578888999999999999999988877633333 3332 2234
Q ss_pred HHHHH-----HHHHHhhcCCChhHHHHHHHHHHHhhhhccCC---CCHHHHHHHHHHhccCChh-HHHHHHHHHHHHHH
Q 039884 324 SREIL-----AALESRLLDFDDRVRTEAVIVACDLARSHLKF---VPEKLISEATERLRDKKIS-IRKKALLKLLEVYR 393 (757)
Q Consensus 324 ~~ei~-----~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~---v~~~ll~~l~eR~rDKk~~-VR~~A~~~L~~lY~ 393 (757)
..+|+ +.+-+.|.|+--..=++.|.+|..++.+.++. +..-.|+-+...+|-+... +...|..+|-++-.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 44553 56778888988888899999998888777753 3456777777777777544 88888877766544
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.05 E-value=4.6e+02 Score=33.57 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCC-chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc-chHHHHHHHHHHhhc
Q 039884 259 QVDVRIKAVNLIGKICAQPDN-CLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR-KESREILAALESRLL 336 (757)
Q Consensus 259 ~~~~R~~At~llG~mfs~~~~-~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~~~~ei~~~L~~rL~ 336 (757)
+.-.|+=..-.||+++..-+. .+.-.........+.=..|-.|+||.+.|=+...++.+..+. ++..+ ..++..
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~----~~~~~~ 688 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTL----VVEEEI 688 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhh----hhhhhh
Confidence 588999999999999975321 122222333444555678999999999998888888764321 11111 122333
Q ss_pred C-CChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 337 D-FDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 337 D-~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
| +|++++.+-. ....+-.++.++.|=.+-||+|-...|+.+-..|
T Consensus 689 ~l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 689 DLDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred cchhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 3 3333322211 1122246778889999999999888888875544
No 179
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=32.63 E-value=1.3e+02 Score=38.64 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=88.4
Q ss_pred HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC---
Q 039884 244 LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF--- 320 (757)
Q Consensus 244 L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--- 320 (757)
+.+-+|-+-.-+.+....+|..|.+.+|.||... -...+-.+.+.++-=..|.+--+|.+-....-..+..--.
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~---~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l 890 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSA---TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGL 890 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccc
Confidence 5566777777888999999999999999999653 3566777788888777888888887766655555543111
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc--------cCCCCHHHHHH
Q 039884 321 RKESREILAALESRLLDFDDRVRTEAVIVACDLARSH--------LKFVPEKLISE 368 (757)
Q Consensus 321 ~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~--------~~~v~~~ll~~ 368 (757)
.-...=++.-|-.|+-|.+|.||.+|-+++..+..-- +...|.+++..
T Consensus 891 ~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ 946 (1549)
T KOG0392|consen 891 VPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLAS 946 (1549)
T ss_pred cccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHh
Confidence 1123346788899999999999999999998775322 23456666654
No 180
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=32.20 E-value=1.6e+02 Score=29.15 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=44.2
Q ss_pred hHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHH
Q 039884 302 EVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIR 381 (757)
Q Consensus 302 ~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR 381 (757)
..|..|+-..+.+.. . ....++.+.+...+.|.+.-||.++--++.++.... ++.++..+...-.+......
T Consensus 121 ~rR~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~----~~~v~~~l~~~~~~~~~~t~ 192 (197)
T cd06561 121 VRRAAIVLLLRLIKK-E---TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD----PERVIAFLEKNGLSMPRLTL 192 (197)
T ss_pred HHHHHHHHHHHHHHh-c---ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHHhCChHHH
Confidence 344555555544332 1 123466677777777788888888888887777653 45666666555555444444
Q ss_pred HHH
Q 039884 382 KKA 384 (757)
Q Consensus 382 ~~A 384 (757)
++|
T Consensus 193 r~a 195 (197)
T cd06561 193 RYA 195 (197)
T ss_pred HHH
Confidence 444
No 181
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=30.88 E-value=6.8e+02 Score=26.68 Aligned_cols=112 Identities=19% Similarity=0.076 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC---chhhhcHHHHHHHHhhccCCCH
Q 039884 225 LKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN---CLADRYPELFVEFLKRFSDKSA 301 (757)
Q Consensus 225 l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~---~~~~~~~~~w~~fL~R~~D~s~ 301 (757)
+.+..+.+++.+....++.|...+ +=..-++-+|..|...++.+....+. ...+-++.+++.++. +++
T Consensus 97 ~tE~l~~ilasv~~G~~~~L~~li-----~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~----~~~ 167 (249)
T PF06685_consen 97 ITEDLPRILASVGDGDIEPLKELI-----EDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLE----RNP 167 (249)
T ss_pred hHhHHHHHHHHHhCCCHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc----cCc
Confidence 455788899999999999988743 11233577899999999999776432 344445555555553 344
Q ss_pred hHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHH
Q 039884 302 EVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIV 349 (757)
Q Consensus 302 ~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~ 349 (757)
+. .|-..+..+.--+|. +...+|-++...-|+|+.= |..+-|+.
T Consensus 168 ~~--~~~~Lv~~~~dL~~~-EL~~~I~~~f~~~lVd~~~-i~~e~ve~ 211 (249)
T PF06685_consen 168 SF--LWGSLVADICDLYPE-ELLPEIRKAFEDGLVDPSF-IDLEDVEE 211 (249)
T ss_pred hH--HHHHHHHHHHhcCHH-HhHHHHHHHHHcCCCCccc-cCHHHHHH
Confidence 44 555555555544553 3455677777777887754 34444443
No 182
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.70 E-value=5e+02 Score=25.03 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--CCCCHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHH
Q 039884 323 ESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL--KFVPEKLISEATERLRD-KKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 323 ~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~--~~v~~~ll~~l~eR~rD-Kk~~VR~~A~~~L~~lY~~ 394 (757)
...+.+.+|++||...+.+|=+-|...+..+.+. .| ...+.+.+..+...+.+ ..+.||+.++..+-.-+..
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999888776642 23 35677888888877764 3467998888766654443
No 183
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=30.53 E-value=6.5e+02 Score=30.13 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhcc-----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 322 KESREILAALESRL-LDFDDRVRTEAVIVACDLARSHL-----KFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 322 ~~~~ei~~~L~~rL-~D~DekVR~aaV~~i~~l~~~~~-----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
+...+++..+..-+ ..+.+.||.++..-+..+++..+ ..+.+.+-....-.++||+|-|+..|++..+..
T Consensus 475 ~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 475 QLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 44567777787777 88888899999999998885443 246678888888999999999999999987753
No 184
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=30.20 E-value=1.4e+02 Score=29.30 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc----chHHHHHHHHH
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR----KESREILAALE 332 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~----~~~~ei~~~L~ 332 (757)
....++|..|+-.+.+++...+.++.+.-.+.+..++.+-. .+.-++. +..+..++---|+. -..+.+.+.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~-~d~~i~~--~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE-MDSLIIA--FSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-CCHHHHH--HHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc-chhHHHH--HHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 45678899999999999733233333333444444443322 2344443 33343333222310 00114556666
Q ss_pred Hhhc--CCChhHHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHhc-cCChh-HHHHHHHHHHHH
Q 039884 333 SRLL--DFDDRVRTEAVIVACDLARS--HLKFVPEKLISEATERLR-DKKIS-IRKKALLKLLEV 391 (757)
Q Consensus 333 ~rL~--D~DekVR~aaV~~i~~l~~~--~~~~v~~~ll~~l~eR~r-DKk~~-VR~~A~~~L~~l 391 (757)
.... -.|+.+-.++++.+..-... .-..+...-+..+.+-.+ +++.. ||..|.-+|+++
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6666 78888888899888665422 224777878888888784 55566 899999999874
No 185
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.02 E-value=3e+02 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~ 355 (757)
....++++.|.+|+.+.+++|-+.|...+..+.+
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvk 66 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVK 66 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999988866654
No 186
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=29.54 E-value=1.8e+02 Score=28.36 Aligned_cols=124 Identities=14% Similarity=0.200 Sum_probs=72.4
Q ss_pred HHHHHHHhhc-ccc-CCcchHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHh-
Q 039884 170 LEVVLWNLVK-QEK-DSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLA- 246 (757)
Q Consensus 170 ld~Il~~l~~-~~~-~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~- 246 (757)
+|.||..|.. +.. +..+.+.-+-..+.....+.....+..|+.+.+.+++.. -.-.+...+-.++.+.|++-..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHH
Confidence 3555655554 222 222333333333446666777788888888877543322 2235777888999999988553
Q ss_pred -----hHHhhhhhhc--CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccC
Q 039884 247 -----VIPNLIQELL--VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSD 298 (757)
Q Consensus 247 -----ViP~l~~eL~--sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D 298 (757)
+++.+-.... +++...-..+.+++.---+.. +-.+.-..-+..||+..-.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~--~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK--SCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH--HHHHCCHHHCHHHHHHHTT
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHc
Confidence 4555665556 677777777777776554332 2233444566677777663
No 187
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.45 E-value=3.2e+02 Score=39.18 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHhhccCCCCCcchhHHHHHHHHHHhhhhhhhh--------------ccCCchHHHHHHHHHHHHhhhcC
Q 039884 77 LRGVFELII-SLFKELGNTGCPFFSKRVKILEIVARSKCFVIM--------------LDIDCNDLVLQMFNNFFSVVRLC 141 (757)
Q Consensus 77 LkdIF~l~i-~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~--------------~Dl~~~~li~~lF~~ff~~v~~~ 141 (757)
..+||+.=. .-|..+.+ ++|.|..--.+|-+..+..-|.=+ +|++...+...||+.+|..++.-
T Consensus 541 f~eIfe~~~p~iferi~~-n~~l~~i~n~~l~n~~ts~~fa~ill~fll~rl~e~gs~~~~~s~l~LrLFkl~F~sv~~f 619 (3550)
T KOG0889|consen 541 FYEIFETNSPFIFERILK-NNALFHIANTLLSNESTSVNFANILLSFLLSRLKELGSNDLLDSKLLLRLFKLIFGSVSKF 619 (3550)
T ss_pred HHHHHHHhhHHHHHHHhc-cCcHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHccCccccchhhHhhhhhhhhhhhcc
Q ss_pred CCcchhhHHHHHHHHHHH---HhhcC-CChh---HHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhhhh
Q 039884 142 SEPHLSSLTNHMLSTMTH---IINEE-TSLP---LLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSC 214 (757)
Q Consensus 142 ~~~~~~~v~~~m~~Il~~---vI~E~-~~~~---lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~ 214 (757)
+.++.+.+..+|-+|+.. +..++ .+.. +|..|+..+.. .+.+..-+----+=|.+-+.++..
T Consensus 620 ~~~nervl~phv~~Ii~~smela~~a~eplnYf~LLraLFRsigG-----------g~~d~ly~e~lplL~~lLe~ln~l 688 (3550)
T KOG0889|consen 620 PSENERVLRPHVHDIISTSMELATTAPEPLNYFQLLRALFRSIGG-----------GAFDSLYREVLPLLPNLLEILNHL 688 (3550)
T ss_pred cccchhhcccchhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhhc-----------cchHhHHHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhh
Q 039884 215 FLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNL 251 (757)
Q Consensus 215 ~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l 251 (757)
+....+.+ --||..|+.-..|--|++++|++
T Consensus 689 ~~~~~s~~------mkdLfvELclTvPvRLS~Llpyl 719 (3550)
T KOG0889|consen 689 LSSFHSQG------MKDLFVELCLTLPVRLSSLLPYL 719 (3550)
T ss_pred hhccCccc------hHHHHHHHHHhhhHHHHHhhhhh
No 188
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=29.02 E-value=67 Score=33.78 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.7
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHhh--hcCchhhhhhhhchhHHHHhhh
Q 039884 373 LRDKKISIRKKALLKLLEVYREYCKKC--CEGQMTVCDHFEQIPCKILMLC 421 (757)
Q Consensus 373 ~rDKk~~VR~~A~~~L~~lY~~~~~~~--~~~~~~~~~~~~wIP~~il~~~ 421 (757)
++|..+.|-|.||.+.+.+|+..+... ..+.+..|+.+..+.+.|++.+
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~ 52 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLW 52 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999876644 3445778889999999999874
No 189
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.51 E-value=3.1e+02 Score=30.64 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=91.1
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhh--hcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 248 IPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLAD--RYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 248 iP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~--~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
+|.--....+-+.+.|..|-.-+-...-. .+-|. .--.-|.--++=.++.++.||.........+..|||...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe-- 160 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQE-- 160 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHH--
Confidence 45555556677788888888887665421 11111 1123578888888999999999998999999999994221
Q ss_pred HHH------HHHHHhhcCCChhHHHHHHHHHHHhhhhccC-------CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 326 EIL------AALESRLLDFDDRVRTEAVIVACDLARSHLK-------FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 326 ei~------~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-------~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
.++ +.+.---.|.+..||..|.-+|+.+.....- .-+-.+|..+.++- ++....+..|+..++.+-
T Consensus 161 ~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 161 QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHH
Confidence 222 2222234899999999999999988754431 12335566665542 234555566666666655
Q ss_pred HH
Q 039884 393 RE 394 (757)
Q Consensus 393 ~~ 394 (757)
..
T Consensus 240 ~~ 241 (342)
T KOG2160|consen 240 QE 241 (342)
T ss_pred Hh
Confidence 54
No 190
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=27.37 E-value=1e+03 Score=27.51 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhh-cCCChhHHHHHHHHhh
Q 039884 124 NDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIIN-EETSLPLLEVVLWNLV 178 (757)
Q Consensus 124 ~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~-E~~~~~lld~Il~~l~ 178 (757)
++|+..|| .+++ .+.+..-+..|--||.-++. +....|..+.++.+|.
T Consensus 25 ~~ll~~Lf----~~i~---~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~ 73 (435)
T PF03378_consen 25 QQLLQNLF----ALIE---KPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLT 73 (435)
T ss_dssp HHHHHHHH----HHHH---TT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHH
T ss_pred HHHHHHHH----HHHh---cCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555555 5544 22224455667777766654 2233555666665554
No 191
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.18 E-value=2.8e+02 Score=26.19 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHhhcC--CChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHH
Q 039884 158 THIINEE--TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCG 209 (757)
Q Consensus 158 ~~vI~E~--~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~ 209 (757)
+.+|+.. .+-+.+..|-..|-.+++...-.|-.+-..++.+|+..+...|+.
T Consensus 25 cd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s 78 (133)
T cd03561 25 CDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD 78 (133)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh
Confidence 3444543 334578888877776655443445566677888888888766643
No 192
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=1.1e+03 Score=31.28 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=92.3
Q ss_pred CchhHHhhHHhhhhhhcCCC-hHHHHHHHHHHHHHhcCCCCchhh-hcHHHHHHHHhhccCC----------CHhHHHHH
Q 039884 240 SPQMLLAVIPNLIQELLVDQ-VDVRIKAVNLIGKICAQPDNCLAD-RYPELFVEFLKRFSDK----------SAEVRLNA 307 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~sd~-~~~R~~At~llG~mfs~~~~~~~~-~~~~~w~~fL~R~~D~----------s~~VR~~~ 307 (757)
-|+.|--++=..=.++..|+ +++|-.|++++-|+|+++++.+.. ...+.+-..+-..-|. ..++-..|
T Consensus 990 l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqw 1069 (1610)
T KOG1848|consen 990 LPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQW 1069 (1610)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhh
Confidence 34444443333344566554 999999999999999999877663 1222222233333331 12344566
Q ss_pred HHHhHHHHh--------------cCCC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC--CCCHHHH----
Q 039884 308 LRCAKACYL--------------GGPF-RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK--FVPEKLI---- 366 (757)
Q Consensus 308 v~~~~~il~--------------~~~~-~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~--~v~~~ll---- 366 (757)
-+.+-..+. |.+. .+.-+++...+.+-.-|.-.++-.+|++++.++-..... .++....
T Consensus 1070 tet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n 1149 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKIN 1149 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhh
Confidence 665543332 2332 344557888899999999999999999999988755442 2222211
Q ss_pred --HHHHHHhccC--------ChhHHHHHHHHHHHHHHH
Q 039884 367 --SEATERLRDK--------KISIRKKALLKLLEVYRE 394 (757)
Q Consensus 367 --~~l~eR~rDK--------k~~VR~~A~~~L~~lY~~ 394 (757)
-...+|+-.+ -++|-.|-+.+|+..|..
T Consensus 1150 ~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs 1187 (1610)
T KOG1848|consen 1150 LVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQS 1187 (1610)
T ss_pred hhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHH
Confidence 1122344333 245777788888855543
No 193
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=25.57 E-value=4.8e+02 Score=27.87 Aligned_cols=110 Identities=15% Similarity=0.282 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH----------HHhhhhcccC-CCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHH
Q 039884 15 PETSKKAEALKKLEAATKPLRK----------SIIKHGLLHQ-NDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFEL 83 (757)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~----------~L~~~~lL~h-kd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l 83 (757)
.+..++.++++++.+-+....+ ++.++.+|.+ .+..+|.+-+|+.+|.++=.-|+. +.|+.
T Consensus 40 ee~~~R~~vl~~L~~iv~~wv~~~~~~~p~~l~~~~~~~l~~ld~~s~~sLnG~Rv~~~il~~Vp~~--------~~Fr~ 111 (254)
T PF04928_consen 40 EEEQKREEVLRKLQQIVKEWVKQALPRVPEDLDLLDDDPLRNLDEASVRSLNGVRVTDYILRLVPNQ--------ETFRT 111 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSB-TT--TT-GGGGTT--HHHHHHHHHHHHHHHHHCTSS-H--------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhcCCCcccccCCchhhhCCCHhhccCcccccHHHHHHHHCCCH--------HHHHH
Confidence 3455667788888777776654 5666777766 446799999999999888778887 77877
Q ss_pred HHHHhh------ccCCCCCcchhHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhh
Q 039884 84 IISLFK------ELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVR 139 (757)
Q Consensus 84 ~i~~~~------~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~~~~li~~lF~~ff~~v~ 139 (757)
.++.++ |+...--+|+.-- ++ .+-..+.|-+.-+-. ...++..||...+
T Consensus 112 ~lR~IK~WAk~RGIYsn~~GylGGI-~w--aILvArvcql~Pn~~----~~~ll~~FF~~ys 166 (254)
T PF04928_consen 112 ALRFIKLWAKRRGIYSNVFGYLGGI-HW--AILVARVCQLYPNAS----PSTLLSRFFQIYS 166 (254)
T ss_dssp HHHHHHHHHHHTT-B-CCCTSB-HH-HH--HHHHHHHHHHSTT------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccchhhccchHH-HH--HHHHHHHHHHCcccc----ccchHHHHHHHhc
Confidence 777766 5554444544321 11 122234444433322 3345555666543
No 194
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=25.38 E-value=4.6e+02 Score=27.56 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHHhcCC-CCchhhhcHH-HHHHHHhhccCC----CHhHHHHHHHHhHHHHh---cCC-CcchHHHH
Q 039884 258 DQVDVRIKAVNLIGKICAQP-DNCLADRYPE-LFVEFLKRFSDK----SAEVRLNALRCAKACYL---GGP-FRKESREI 327 (757)
Q Consensus 258 d~~~~R~~At~llG~mfs~~-~~~~~~~~~~-~w~~fL~R~~D~----s~~VR~~~v~~~~~il~---~~~-~~~~~~ei 327 (757)
.....++.+.+++..||+.+ +....-.|.. ..-+-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 77889999999999999975 4455566666 344444444443 68899988665554422 222 33344456
Q ss_pred HHHHHHhh-cC-CChhHHHHHHHHHHHhh
Q 039884 328 LAALESRL-LD-FDDRVRTEAVIVACDLA 354 (757)
Q Consensus 328 ~~~L~~rL-~D-~DekVR~aaV~~i~~l~ 354 (757)
+..+.+-+ .. .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 66666632 22 57777777777777665
No 195
>PF14308 DnaJ-X: X-domain of DnaJ-containing
Probab=25.32 E-value=3.2e+02 Score=28.00 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHHHHhc-cCC-----hhHHHHHHHHHHHHHHHHHHh
Q 039884 364 KLISEATERLR-DKK-----ISIRKKALLKLLEVYREYCKK 398 (757)
Q Consensus 364 ~ll~~l~eR~r-DKk-----~~VR~~A~~~L~~lY~~~~~~ 398 (757)
.+++.+.+++. |+. ..=|-+||..||++|..+...
T Consensus 148 ~Tlr~Vc~~VL~D~~V~~~~r~~RA~aL~~LG~if~~~~~~ 188 (204)
T PF14308_consen 148 STLREVCDKVLYDKGVDKETRLKRAEALKILGKIFQKVKRD 188 (204)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555655543 332 346889999999999987554
No 196
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.27 E-value=3.9e+02 Score=26.30 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred ChhhHHHHHHhhhcC-cccCchhhHHHHHHHHHHHhhC-CcCCccc----HHHHHHHHhhccC--CchHHHHHHHhhCCc
Q 039884 587 DSELVCCIVNGLSSN-RYADKHLEDSSINLLLAIISIF-PSLLRGS----EVQFQKLLERNGL--INDKLIEVLAKAGPH 658 (757)
Q Consensus 587 n~s~v~~ll~~~~~~-~~~~~~~~~~a~~LL~~iS~~~-P~lf~~~----~~~L~~~l~d~~~--~~~~~l~~l~k~~~~ 658 (757)
+++.+..+..++.+- .+.+....-.|..|+..+...+ |+.|..+ ...|..+|+..++ +.+.++..+++-...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q ss_pred cccCcCcHHHHHHHHHhcCCcHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCCCCcchhHhHHHHHHhhChhhhhh
Q 039884 659 ISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFES 738 (757)
Q Consensus 659 ~~~~~~~~~~~L~~~a~~Gtp~qAK~Av~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~l~t~L~sL~~ia~~~p~~fe~ 738 (757)
..+++++.-.. +||.-.|...-+|....+ +....+.|.+|+.+-+.+|..|-.
T Consensus 99 -~~~~p~l~Rei------~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~ptt~rp 151 (165)
T PF08167_consen 99 -IRGKPTLTREI------ATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHPTTFRP 151 (165)
T ss_pred -hcCCCchHHHH------hhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCCccccc
Q ss_pred hhhhHHHHHHHhc
Q 039884 739 QSEDITRYIYENL 751 (757)
Q Consensus 739 ~~~~I~~flik~v 751 (757)
+...|.++++.-+
T Consensus 152 ~~~ki~~~l~~ll 164 (165)
T PF08167_consen 152 FANKIESALLSLL 164 (165)
T ss_pred hHHHHHHHHHHHh
No 197
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.97 E-value=2.7e+02 Score=26.41 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=51.9
Q ss_pred cHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHH
Q 039884 285 YPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEK 364 (757)
Q Consensus 285 ~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ 364 (757)
...+-.-.++|.+|+++-|..++++..+.+....+. +....+.+.+ ..|+.. ..++..+++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-----~f~~~~~~~~---------~~Ik~~-----~~f~g~~Dp 96 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-----DFKRELQRNS---------AQIREC-----ANYKGPPDP 96 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-----HHHHHHHHhH---------HHHHHH-----HHcCCCCCc
Confidence 345566678999999999999999999988776542 2333333332 222222 222222221
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 365 LISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 365 ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+ ...|-...||.+|=+.+.-||..
T Consensus 97 ~------~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 97 L------KGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred c------cCcchhHHHHHHHHHHHHHHhcc
Confidence 0 22344566999999999888863
No 198
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.73 E-value=3e+02 Score=26.61 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=58.6
Q ss_pred HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh---hcc--CCCCHHHHHHHHHHhccC------C
Q 039884 309 RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR---SHL--KFVPEKLISEATERLRDK------K 377 (757)
Q Consensus 309 ~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~---~~~--~~v~~~ll~~l~eR~rDK------k 377 (757)
+.|-. +.+.|. ...+.+.++.+|+...+.+|=+-|+..+..+.+ ..| ...+.+.+..+..++.+| .
T Consensus 24 eicD~-In~~~~--~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~ 100 (139)
T cd03567 24 AFCEQ-INKEPE--GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS 100 (139)
T ss_pred HHHHH-HHcCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC
Confidence 44443 344453 467899999999999999999999888877663 223 456778888887777543 4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 039884 378 ISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 378 ~~VR~~A~~~L~~lY~~~~ 396 (757)
..||...+..+ +-|...+
T Consensus 101 ~~Vk~kil~li-~~W~~~f 118 (139)
T cd03567 101 EKVKTKIIELL-YSWTLEL 118 (139)
T ss_pred HHHHHHHHHHH-HHHHHHh
Confidence 68888877654 4555544
No 199
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=24.51 E-value=2.5e+02 Score=28.35 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHhhhCCCCCCC--chhHHHHHHHH
Q 039884 49 KDIRLSVATCVSELFRILAPEPPFE--DNYLRGVFELI 84 (757)
Q Consensus 49 ~~Vr~~~acCl~dIlRi~APdaPy~--d~~LkdIF~l~ 84 (757)
..||...+-|+..++.-..|+-|+- .++|++||..-
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~ 58 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSE 58 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccc
Confidence 3499999999999994443432433 36777777543
No 200
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=24.46 E-value=1e+02 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKI 273 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~m 273 (757)
++|.|-.-|.+++.+++..|+..++.+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 677777778889999999999999987
No 201
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.20 E-value=7e+02 Score=31.28 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHhhhhhhcCCChHHHHHHHH---HHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC--c
Q 039884 247 VIPNLIQELLVDQVDVRIKAVN---LIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF--R 321 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~---llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~ 321 (757)
|+--.-+-|..+|.-+=+.|++ ++.+| +|+ .-.|++-..|.+..+---++-|+.+-+....++....+ .
T Consensus 769 vl~i~ld~LkdedsyvyLnaI~gv~~Lcev--y~e----~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~ 842 (982)
T KOG4653|consen 769 VLAIALDTLKDEDSYVYLNAIRGVVSLCEV--YPE----DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF 842 (982)
T ss_pred HHHHHHHHhcccCceeeHHHHHHHHHHHHh--cch----hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCH----HHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPE----KLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~----~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
.....|+..+-.-..|||+.-|..++..+..+....-..+++ -+-..+..-+-|..+-||+.|+..+..+
T Consensus 843 ~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~l 916 (982)
T KOG4653|consen 843 KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAEL 916 (982)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHH
No 202
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.12 E-value=1.5e+03 Score=28.55 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhh---cCC--ChhHHHHHHHHhhccccCCcchHHHHHHHHHh
Q 039884 123 CNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIIN---EET--SLPLLEVVLWNLVKQEKDSPYAASQLAVSVIR 197 (757)
Q Consensus 123 ~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~---E~~--~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~ 197 (757)
-.+-+..+|++.+.+-- ...+.++..--.+.|+..-+ |.. =.|.+..++..|-...-. -.+-.--+.+|+
T Consensus 502 ~~~~i~rl~~~~asik~---S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~ 576 (982)
T KOG2022|consen 502 ESTWIPRLFETSASIKL---SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCE 576 (982)
T ss_pred hhHHHHHHHHhcccccc---ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHH
Confidence 34688999999988631 22344444444444444432 321 145677777777432211 122223578999
Q ss_pred hchhhhhHHHHHHhhhhc---cCCCccccchHHHHHHH--------HHHHhhcCchhHHhhHHhhhhhhcCC-ChHHHHH
Q 039884 198 NCAEKLEPFVCGFLTSCF---LDRDAVEGDLKEFYHEI--------IFKIFQCSPQMLLAVIPNLIQELLVD-QVDVRIK 265 (757)
Q Consensus 198 ~~~~~l~~~i~~~~~~~~---~~~~~~~~~l~~~~~el--------i~el~~~~P~lL~~ViP~l~~eL~sd-~~~~R~~ 265 (757)
.|.+.|.||+-+|.+-|- ..+....++..+-+.-| ..|+-++-=.++...+.|++.-|.++ +.+.+..
T Consensus 577 ~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l 656 (982)
T KOG2022|consen 577 TCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHL 656 (982)
T ss_pred hhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 999999999999988762 33333333332222222 22333333345555666777766544 3445555
Q ss_pred HHHHHHHHhc
Q 039884 266 AVNLIGKICA 275 (757)
Q Consensus 266 At~llG~mfs 275 (757)
.+...-.+++
T Consensus 657 ~~~~~l~~iS 666 (982)
T KOG2022|consen 657 RIAFQLNTIS 666 (982)
T ss_pred HHHHHHHHHH
Confidence 5544433333
No 203
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.01 E-value=2.4e+02 Score=26.87 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
-|.++-...+.++|+ ..+..|||..... ...+.+.++.+..|+..+++.|--.|+..|-.+.+.
T Consensus 9 li~kATs~~~~~~Dw----~~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkN 72 (140)
T PF00790_consen 9 LIEKATSESLPSPDW----SLILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKN 72 (140)
T ss_dssp HHHHHT-TTSSS--H----HHHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCCH----HHHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 344444456666665 4556677777665 556789999999999999999999999999888773
No 204
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.92 E-value=1.6e+02 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=20.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 368 EATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 368 ~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
.+-+.|....+.||.+|+.++.++-..
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 344667889999999999999887543
No 205
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.72 E-value=3.5e+02 Score=24.88 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCh--hHHHHHHHHHHHHHHHH
Q 039884 325 REILAALESRLL-DFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKI--SIRKKALLKLLEVYREY 395 (757)
Q Consensus 325 ~ei~~~L~~rL~-D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~--~VR~~A~~~L~~lY~~~ 395 (757)
..+++.+.+-|. -.....|.++-..++.++... -.++++++.+.+.+-..-. ...+.|+..|+.+|...
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~--~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV--PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc--CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 456777777777 667799999999999998544 2355666666665544432 12578999999999654
No 206
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=23.42 E-value=1.9e+02 Score=26.68 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=33.9
Q ss_pred hhhhhhhhchhHHHHhhhcccccccchhhhHHHHHH---hccCCC-CC--HHHHHHHH----------HHHHhcCCHHHH
Q 039884 404 MTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILV---EDLFPV-LE--VEESTRHW----------VHLFSLFTPLHL 467 (757)
Q Consensus 404 ~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~---e~LlP~-~~--~~~R~~~l----------~~l~~~ld~~~~ 467 (757)
......|.|+|.-+ .+.+|+..|. +.-+|+ =+ ..-|.+.| ...+.+|++.++
T Consensus 15 ~~~~~~Y~WvPpgl------------~~~~v~~Ym~~LP~~~vP~~gS~Ge~~R~~QL~~QLP~hD~d~~~C~~Lse~E~ 82 (106)
T PF06297_consen 15 GCALEEYAWVPPGL------------SPELVEQYMSCLPEEKVPVVGSPGEKYRRRQLLYQLPPHDLDPRYCHSLSEEEK 82 (106)
T ss_pred CcccceeeecCCCC------------ChHHHHHHHHhCCCcCCCCCCCHHHHHHHHHHHHcCCcccCCHHHHhhCCHHHH
Confidence 33456899999432 1235665554 344566 22 33444444 334466777777
Q ss_pred HHHHHHHHHh
Q 039884 468 KALNCVLSQK 477 (757)
Q Consensus 468 ka~~~i~~~k 477 (757)
+.+..|.+++
T Consensus 83 k~l~~F~~~r 92 (106)
T PF06297_consen 83 KELEDFVKQR 92 (106)
T ss_pred HHHHHHHHHH
Confidence 7666555543
No 207
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=3.3e+02 Score=33.62 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHH-------HHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 039884 286 PELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREI-------LAALESRLLDFDDRVRTEAVIVACDLARSHL 358 (757)
Q Consensus 286 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei-------~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~ 358 (757)
++.-+..|+-..-.+-.||..-|+....++.+.|. +.+++ +..|..-|.|.-|-||-+++-.++++.....
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 34444444444445889999999999998888773 22222 4667789999999999999999999987655
Q ss_pred CC---C-CHHHHHHHHHHhcc----CChhHHHHHHHHHHHHHHH
Q 039884 359 KF---V-PEKLISEATERLRD----KKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 359 ~~---v-~~~ll~~l~eR~rD----Kk~~VR~~A~~~L~~lY~~ 394 (757)
++ | =+.++..+..-+++ .---|=.+||..|-.|-+.
T Consensus 199 ~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 199 SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 32 1 12233333332222 2245778899999888763
No 208
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.83 E-value=3.4e+02 Score=29.46 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCCC------chhhh-cHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDN------CLADR-YPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF 320 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~------~~~~~-~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 320 (757)
+.++++..-...++++|+...+. .+... .+..|..|++-..=.+..|..........++...+.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 67788888888888888887542 11221 223788888855555888888888888877776664
No 209
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.80 E-value=1.3e+02 Score=21.38 Aligned_cols=28 Identities=32% Similarity=0.248 Sum_probs=21.9
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 327 ILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 327 i~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
.++.|.+.+...|++|+..++.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566666777889999999999987664
No 210
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.70 E-value=1.6e+03 Score=28.14 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHhHHHHhcCCC------cchHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHhhhhccCC--C--CHHHHHHH
Q 039884 306 NALRCAKACYLGGPF------RKESREILAALESRLLDF------DDRVRTEAVIVACDLARSHLKF--V--PEKLISEA 369 (757)
Q Consensus 306 ~~v~~~~~il~~~~~------~~~~~ei~~~L~~rL~D~------DekVR~aaV~~i~~l~~~~~~~--v--~~~ll~~l 369 (757)
+|++...--|.+||- +.+.-.++.-+.+||+|. |.+.-.+.|.++..+...++-+ | .++-+-.+
T Consensus 160 ~CleslRVsL~~npVSwvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~llll 239 (1102)
T KOG1924|consen 160 ECLESLRVSLTSNPVSWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLL 239 (1102)
T ss_pred HHHHHHhhhhcCCccHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccccceeeeecCCccHHHH
Confidence 344444444455551 233335566667788886 5566677888887777655532 1 23334444
Q ss_pred HHHhccCChhHHHHHHHHHHHHHHH
Q 039884 370 TERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 370 ~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+.-+--+++..+.++++.|+.+.=.
T Consensus 240 a~aldpr~pnmm~dvvkllsalciV 264 (1102)
T KOG1924|consen 240 ARALDPREPNMMTDVVKLLSALCIV 264 (1102)
T ss_pred HHhcCccCccHHHHHHHHHHHHhee
Confidence 4444456689999999988876544
No 211
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.00 E-value=6.7e+02 Score=24.22 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC--c-ch-HHHHHHHHHHhhcC-CChhHHHHHHHHHHHhhh
Q 039884 286 PELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF--R-KE-SREILAALESRLLD-FDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 286 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~-~~-~~ei~~~L~~rL~D-~DekVR~aaV~~i~~l~~ 355 (757)
.+.-++..+|.+.++|.|=...+.....|..|... + +. ..+.++.|.+.+.+ ++..||..+...+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 36677777777777777766666666666666542 1 11 23667777777777 899999999999988764
No 212
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=21.75 E-value=1.6e+02 Score=26.57 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHHHHHHHhccC-ChhHHHHHHHHHHHHHHHHHH
Q 039884 364 KLISEATERLRDK-KISIRKKALLKLLEVYREYCK 397 (757)
Q Consensus 364 ~ll~~l~eR~rDK-k~~VR~~A~~~L~~lY~~~~~ 397 (757)
..++.+...+.++ ...||+-||-+++.+|+...+
T Consensus 24 ~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIiP 58 (95)
T PF07540_consen 24 GSLKRLLKLCESKVDVTVRKLAILSLLAVFKDIIP 58 (95)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcCC
Confidence 3566677777777 899999999999999997655
No 213
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.55 E-value=1.6e+03 Score=27.79 Aligned_cols=222 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhh-hhHHHHHHhhhhccCCCccccchHHH
Q 039884 150 TNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEK-LEPFVCGFLTSCFLDRDAVEGDLKEF 228 (757)
Q Consensus 150 ~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~-l~~~i~~~~~~~~~~~~~~~~~l~~~ 228 (757)
+..++-+-.+++-|.. .++++.|.+.+.+.-.+.+|.--.||-..|.+-+.. +.-.++.=+.-.++.++.+. -++++
T Consensus 90 EKqIGYl~is~L~n~n-~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~-~vkqk 167 (938)
T KOG1077|consen 90 EKQIGYLFISLLLNEN-SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMD-YVKQK 167 (938)
T ss_pred HHHHhHHHHHHHHhcc-hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchH-HHHHH
Q ss_pred HHHHHHHHhh----------------------------------------------------------------------
Q 039884 229 YHEIIFKIFQ---------------------------------------------------------------------- 238 (757)
Q Consensus 229 ~~eli~el~~---------------------------------------------------------------------- 238 (757)
+---+..|++
T Consensus 168 aALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 168 AALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred HHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhc
Q ss_pred -----cCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC---CchhhhcHHHHHHHHhhccCCCHhHHHHHHHH
Q 039884 239 -----CSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD---NCLADRYPELFVEFLKRFSDKSAEVRLNALRC 310 (757)
Q Consensus 239 -----~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~---~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~ 310 (757)
=+|=+-..++-.|...=.-+|...|..-.+.+-+++..+. .+---+|...=++-| .+.
T Consensus 248 Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVL--------------Fea 313 (938)
T KOG1077|consen 248 TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVL--------------FEA 313 (938)
T ss_pred eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHH--------------HHH
Q ss_pred hHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc--CCCCHHHHHHHHHHhc-cCChhHHHHHHHH
Q 039884 311 AKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL--KFVPEKLISEATERLR-DKKISIRKKALLK 387 (757)
Q Consensus 311 ~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~--~~v~~~ll~~l~eR~r-DKk~~VR~~A~~~ 387 (757)
..-++.-.++.+....-++.|.+-|.+-+-++|.-|.+..|.++...+ +.|-.. ...+..-++ ||..+||+.|+..
T Consensus 314 I~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHH
Q ss_pred H
Q 039884 388 L 388 (757)
Q Consensus 388 L 388 (757)
|
T Consensus 393 L 393 (938)
T KOG1077|consen 393 L 393 (938)
T ss_pred H
No 214
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=1.4e+03 Score=26.98 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=103.6
Q ss_pred HHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhH
Q 039884 233 IFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAK 312 (757)
Q Consensus 233 i~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~ 312 (757)
=..+-...|..+..++.|+-....++-+..|..-+.-+.++...+..+=----.+++..-..|..|.+..+|--+.....
T Consensus 204 qr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~ 283 (533)
T KOG2032|consen 204 QRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLG 283 (533)
T ss_pred HHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 33455567777777888888888888899999999988888765432211122367778889999999999988766665
Q ss_pred HHHhcCCC--cchHHHHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc----cCChhHHHHHH
Q 039884 313 ACYLGGPF--RKESREILAALESRL-LDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLR----DKKISIRKKAL 385 (757)
Q Consensus 313 ~il~~~~~--~~~~~ei~~~L~~rL-~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~r----DKk~~VR~~A~ 385 (757)
....-.|+ ....+.+++++-.-| .|-++.|=++|++++.-+....-..-=...+..++.|+| |-+.++|-.|+
T Consensus 284 ~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~ 363 (533)
T KOG2032|consen 284 NTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAF 363 (533)
T ss_pred HHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHH
Confidence 55444453 122334555555444 455678989998887555422111001122233333333 55677999999
Q ss_pred HHHHHHHHH
Q 039884 386 LKLLEVYRE 394 (757)
Q Consensus 386 ~~L~~lY~~ 394 (757)
...|.+-.-
T Consensus 364 ~Lfg~L~~l 372 (533)
T KOG2032|consen 364 VLFGALAKL 372 (533)
T ss_pred HHHHHHHHH
Confidence 998888663
No 215
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.45 E-value=3.7e+02 Score=25.94 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=51.1
Q ss_pred hhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHH--Hhhhhc--cC----CCccccchHHHHHHHHHHHhh
Q 039884 167 LPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCG--FLTSCF--LD----RDAVEGDLKEFYHEIIFKIFQ 238 (757)
Q Consensus 167 ~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~--~~~~~~--~~----~~~~~~~l~~~~~eli~el~~ 238 (757)
.+.+..|...|-.+++...--|-.+...++++|+..+...|+. |+++++ .. ++.....++++.-++|.+-..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3467777777765554333345566677889999999888864 555543 11 223344566666666665544
Q ss_pred cCchhHHhhHHhhhhhhcC
Q 039884 239 CSPQMLLAVIPNLIQELLV 257 (757)
Q Consensus 239 ~~P~lL~~ViP~l~~eL~s 257 (757)
.-|+. +-+...+.+|++
T Consensus 117 ~f~~~--p~~~~~Y~~Lk~ 133 (139)
T cd03567 117 ELPHE--PKIKEAYDMLKK 133 (139)
T ss_pred Hhccc--chHHHHHHHHHH
Confidence 33321 113455555543
No 216
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.42 E-value=4.6e+02 Score=34.19 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHh-----HHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCC
Q 039884 264 IKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAE-----VRLNALRCAKACYLGGPFRKESREILAALESRLLDF 338 (757)
Q Consensus 264 ~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~-----VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~ 338 (757)
..+.+.+.+|||. .++..+|.+|+..++-..+-... -+.+....+-... +......-...+.+-..+.-.
T Consensus 754 el~L~~l~~~fg~---sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m--~s~l~~~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 754 ELFLKILSKMFGG---SLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLM--HSFLHPLGSLLPRLFFFVRSI 828 (1549)
T ss_pred HHHHHHHHHHhhH---HHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhh--hhhhhhhhhhhhHHHHhcccc
Confidence 3456777777764 68999999999877665432211 1222222222111 111111225567788889999
Q ss_pred ChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 339 DDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 339 DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
+--||.++.++|...++.....+.-.+++.+.-.+.|=-..+|+.+...+
T Consensus 829 ~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~ 878 (1549)
T KOG0392|consen 829 HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADEL 878 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHH
Confidence 99999999999988877654444444444454555666666777665543
No 217
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=20.36 E-value=1.2e+03 Score=25.70 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhh-------cHHHHHHHHhhcc-CCC---------HhHH
Q 039884 242 QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADR-------YPELFVEFLKRFS-DKS---------AEVR 304 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~-------~~~~w~~fL~R~~-D~s---------~~VR 304 (757)
.+|.+=+..|+..|.+........+.+++..|.+..+...+++ ....+...+.+.. +.. ++||
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 3444557777888999988888899999999988444333321 1123333443222 222 2999
Q ss_pred HHHHHHhHHHHhcCC
Q 039884 305 LNALRCAKACYLGGP 319 (757)
Q Consensus 305 ~~~v~~~~~il~~~~ 319 (757)
..+|++.-.++...+
T Consensus 132 ~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGD 146 (330)
T ss_pred HHHHHHHHHHHccCC
Confidence 999999999888755
Done!