Query 039884
Match_columns 757
No_of_seqs 180 out of 285
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.2 3.4E-07 1.2E-11 110.3 49.3 329 45-394 58-430 (852)
2 4fdd_A Transportin-1; heat rep 99.0 1.8E-05 6.3E-10 95.2 50.5 332 44-394 99-472 (852)
3 1b3u_A Protein (protein phosph 99.0 1E-07 3.5E-12 108.4 27.1 323 43-395 134-472 (588)
4 1b3u_A Protein (protein phosph 98.9 3.5E-06 1.2E-10 95.7 37.9 170 223-395 101-273 (588)
5 1qgr_A Protein (importin beta 98.9 0.00013 4.6E-09 86.9 53.4 329 47-394 49-438 (876)
6 2bpt_A Importin beta-1 subunit 98.8 6.7E-05 2.3E-09 89.3 46.5 146 247-392 225-397 (861)
7 2bpt_A Importin beta-1 subunit 98.8 0.00031 1.1E-08 83.5 51.5 170 224-394 346-530 (861)
8 1u6g_C TIP120 protein, CAND1; 98.8 2.6E-06 9E-11 106.6 34.3 335 44-393 95-506 (1230)
9 1u6g_C TIP120 protein, CAND1; 98.8 5.8E-05 2E-09 94.5 46.0 329 43-394 56-464 (1230)
10 1ibr_B P95, importin beta-1 su 98.7 1.7E-05 6E-10 87.0 33.5 333 47-395 49-439 (462)
11 2qk2_A LP04448P; mini spindles 98.7 1.4E-06 4.7E-11 89.0 20.0 148 244-395 54-207 (242)
12 2vgl_B AP-2 complex subunit be 98.5 4.6E-05 1.6E-09 88.3 30.7 160 223-388 63-226 (591)
13 2vgl_B AP-2 complex subunit be 98.5 0.00032 1.1E-08 81.2 36.5 222 167-394 81-312 (591)
14 1qgr_A Protein (importin beta 98.5 0.00015 5E-09 86.6 33.7 170 224-394 343-538 (876)
15 3ltj_A Alpharep-4; protein eng 98.4 6.1E-06 2.1E-10 81.2 17.8 121 246-391 76-196 (201)
16 2qk2_A LP04448P; mini spindles 98.4 3.6E-06 1.2E-10 85.9 16.2 146 246-395 15-164 (242)
17 1ibr_B P95, importin beta-1 su 98.4 2.3E-05 7.9E-10 86.0 23.8 226 167-393 127-395 (462)
18 3ltm_A Alpha-REP4; protein eng 98.4 8.4E-06 2.9E-10 80.8 17.9 187 167-395 18-205 (211)
19 1w63_A Adapter-related protein 98.4 0.00068 2.3E-08 79.0 35.5 418 248-748 36-469 (618)
20 3ltj_A Alpharep-4; protein eng 98.3 2.2E-05 7.6E-10 77.1 16.6 137 224-391 29-165 (201)
21 1w63_A Adapter-related protein 98.2 0.0033 1.1E-07 73.2 36.2 151 326-492 313-469 (618)
22 2qk1_A Protein STU2; STU2P, XM 98.2 4.2E-05 1.4E-09 79.1 17.3 167 229-395 36-222 (249)
23 3ltm_A Alpha-REP4; protein eng 98.2 1.6E-05 5.4E-10 78.8 13.4 120 247-391 20-139 (211)
24 2jdq_A Importin alpha-1 subuni 98.1 0.00024 8.3E-09 77.8 23.3 324 42-393 71-443 (450)
25 1oyz_A Hypothetical protein YI 98.1 4.8E-05 1.6E-09 78.7 15.3 132 246-391 54-186 (280)
26 1oyz_A Hypothetical protein YI 98.0 0.00013 4.6E-09 75.3 17.7 143 224-391 106-248 (280)
27 2jdq_A Importin alpha-1 subuni 98.0 0.00056 1.9E-08 74.8 23.4 170 224-394 207-391 (450)
28 1te4_A Conserved protein MTH18 98.0 3E-06 1E-10 78.4 3.3 120 246-391 12-131 (131)
29 2qk1_A Protein STU2; STU2P, XM 98.0 0.00029 9.9E-09 72.7 18.4 147 249-395 19-177 (249)
30 4hxt_A De novo protein OR329; 97.9 0.00017 6E-09 72.2 15.8 171 224-394 59-242 (252)
31 1wa5_B Importin alpha subunit; 97.9 0.00076 2.6E-08 76.4 22.9 171 224-395 272-459 (530)
32 2db0_A 253AA long hypothetical 97.9 0.00038 1.3E-08 68.1 16.7 196 187-393 51-246 (253)
33 2vgl_A Adaptor protein complex 97.9 0.0083 2.8E-07 70.0 31.4 128 224-357 89-218 (621)
34 4b8j_A Importin subunit alpha- 97.8 0.0051 1.7E-07 69.4 27.1 150 246-395 286-445 (528)
35 4db8_A Armadillo-repeat protei 97.8 0.00032 1.1E-08 70.8 14.9 147 246-392 96-250 (252)
36 4db6_A Armadillo repeat protei 97.8 0.00017 5.8E-09 70.9 12.4 168 224-391 27-207 (210)
37 4hxt_A De novo protein OR329; 97.6 0.00063 2.1E-08 68.1 13.7 169 225-393 18-199 (252)
38 4db6_A Armadillo repeat protei 97.5 0.00031 1.1E-08 69.0 9.7 147 247-393 13-167 (210)
39 1wa5_B Importin alpha subunit; 97.4 0.012 4E-07 66.5 23.0 169 223-392 187-369 (530)
40 2vgl_A Adaptor protein complex 97.4 0.017 5.9E-07 67.2 24.5 164 223-394 383-551 (621)
41 4ffb_C Protein STU2; tubulin f 97.4 0.0029 1E-07 65.8 15.9 143 247-395 11-170 (278)
42 4db8_A Armadillo-repeat protei 97.4 0.00052 1.8E-08 69.2 9.5 147 246-392 54-208 (252)
43 2z6h_A Catenin beta-1, beta-ca 97.3 0.11 3.8E-06 60.2 30.2 147 244-392 12-168 (644)
44 3tpo_A Importin subunit alpha- 97.3 0.023 7.8E-07 64.5 23.0 150 246-395 293-451 (529)
45 3ul1_B Importin subunit alpha- 97.3 0.018 6.2E-07 65.1 22.1 150 246-395 274-432 (510)
46 2of3_A ZYG-9; multifunctional 97.2 0.0066 2.3E-07 63.3 16.0 141 250-395 50-198 (266)
47 4b8j_A Importin subunit alpha- 97.1 0.053 1.8E-06 61.0 23.7 170 223-392 174-357 (528)
48 1xqr_A HSPBP1 protein; armadil 96.8 0.0047 1.6E-07 65.4 10.8 146 246-394 81-239 (296)
49 1te4_A Conserved protein MTH18 96.8 0.0032 1.1E-07 57.7 8.3 87 248-352 44-130 (131)
50 2of3_A ZYG-9; multifunctional 96.8 0.063 2.2E-06 55.9 18.7 177 230-419 67-255 (266)
51 1jdh_A Beta-catenin; beta-cate 96.7 0.13 4.5E-06 57.2 22.4 167 224-391 325-528 (529)
52 2x19_B Importin-13; nuclear tr 96.7 0.065 2.2E-06 64.9 21.0 163 226-393 424-599 (963)
53 3tjz_B Coatomer subunit gamma; 96.5 0.03 1E-06 60.8 14.2 126 221-355 80-205 (355)
54 4ffb_C Protein STU2; tubulin f 96.4 0.087 3E-06 54.5 17.1 148 244-394 53-213 (278)
55 3gs3_A Symplekin, LD45768P; he 96.3 0.08 2.7E-06 54.8 15.7 132 288-422 16-154 (257)
56 2db0_A 253AA long hypothetical 96.3 0.57 1.9E-05 46.1 20.4 190 148-354 47-245 (253)
57 3now_A UNC-45 protein, SD10334 96.1 0.77 2.6E-05 54.9 24.9 147 246-395 623-784 (810)
58 3o2t_A Symplekin; heat repeat, 95.9 0.038 1.3E-06 60.5 11.7 131 288-421 26-163 (386)
59 3now_A UNC-45 protein, SD10334 95.7 2.9 9.9E-05 50.0 27.7 166 225-393 552-737 (810)
60 1jdh_A Beta-catenin; beta-cate 95.7 0.041 1.4E-06 61.3 11.0 150 241-391 12-170 (529)
61 3tjz_B Coatomer subunit gamma; 95.5 0.18 6.2E-06 54.6 14.7 215 166-395 99-318 (355)
62 2x1g_F Cadmus; transport prote 95.4 0.96 3.3E-05 54.8 22.9 164 225-394 437-616 (971)
63 4ady_A RPN2, 26S proteasome re 95.4 0.67 2.3E-05 56.1 20.6 167 235-425 534-701 (963)
64 2z6g_A B-catenin; FULL-length, 95.0 2.8 9.6E-05 49.8 24.7 145 247-392 319-471 (780)
65 3ul1_B Importin subunit alpha- 95.0 0.25 8.4E-06 55.7 14.6 169 224-392 116-302 (510)
66 2z6h_A Catenin beta-1, beta-ca 94.9 0.99 3.4E-05 52.2 19.9 147 246-392 182-335 (644)
67 2z6g_A B-catenin; FULL-length, 94.9 0.15 5.1E-06 60.9 13.1 149 242-391 146-303 (780)
68 3m1i_C Exportin-1; heat repeat 94.8 2 6.9E-05 52.7 23.2 164 228-393 432-618 (1049)
69 4hat_C Exportin-1; heat repeat 94.8 11 0.00038 46.3 35.0 163 229-393 433-618 (1023)
70 3b2a_A TON_1937, putative unch 94.6 1.5 5E-05 44.7 17.3 170 235-416 26-197 (265)
71 3tpo_A Importin subunit alpha- 94.6 0.14 4.8E-06 57.9 11.3 148 244-393 249-406 (529)
72 4ady_A RPN2, 26S proteasome re 94.3 5.4 0.00018 48.4 24.3 124 257-393 589-719 (963)
73 1wa5_C Importin alpha RE-expor 94.0 14 0.00049 44.6 30.7 170 225-395 377-584 (960)
74 1xqr_A HSPBP1 protein; armadil 92.7 1.9 6.4E-05 45.3 15.2 133 222-356 95-239 (296)
75 1lrv_A LRV, leucine-rich repea 92.7 0.063 2.2E-06 55.2 3.7 63 297-389 180-242 (244)
76 3gs3_A Symplekin, LD45768P; he 92.0 6.4 0.00022 40.5 17.8 96 221-316 65-173 (257)
77 3l9t_A Putative uncharacterize 91.9 6.2 0.00021 40.1 17.0 135 245-393 70-207 (240)
78 3ibv_A Exportin-T; karyopherin 91.8 30 0.001 42.3 39.3 341 257-639 204-584 (980)
79 1wa5_C Importin alpha RE-expor 91.3 31 0.0011 41.6 31.6 134 260-393 375-525 (960)
80 3b2a_A TON_1937, putative unch 90.1 17 0.00057 37.1 17.9 167 223-394 47-219 (265)
81 1lrv_A LRV, leucine-rich repea 88.5 0.23 7.9E-06 50.9 3.2 107 228-387 39-145 (244)
82 2x19_B Importin-13; nuclear tr 88.1 51 0.0017 39.4 25.1 238 33-277 564-848 (963)
83 2iw3_A Elongation factor 3A; a 87.0 28 0.00096 42.4 20.5 217 167-393 53-280 (986)
84 3u0r_A Apoptosis inhibitor 5; 87.0 43 0.0015 37.4 23.5 225 281-528 23-263 (507)
85 1xm9_A Plakophilin 1; armadill 86.2 4.7 0.00016 44.5 12.5 143 247-392 3-171 (457)
86 1lsh_A Lipovitellin (LV-1N, LV 86.1 38 0.0013 41.6 21.6 147 229-393 419-576 (1056)
87 3u0r_A Apoptosis inhibitor 5; 85.0 14 0.00047 41.4 15.0 148 194-354 15-162 (507)
88 3opb_A SWI5-dependent HO expre 84.9 3.1 0.00011 49.3 10.5 146 246-393 457-635 (778)
89 3nmw_A APC variant protein; AR 83.8 3.8 0.00013 44.1 9.9 149 246-394 170-335 (354)
90 3o2t_A Symplekin; heat repeat, 83.5 11 0.00036 41.2 13.3 53 222-274 76-128 (386)
91 3opb_A SWI5-dependent HO expre 82.0 3.2 0.00011 49.2 9.1 118 243-363 601-736 (778)
92 1vsy_5 Proteasome activator BL 81.2 3.1 0.00011 51.0 8.8 169 224-395 776-968 (997)
93 3m1i_C Exportin-1; heat repeat 80.7 37 0.0013 41.4 18.4 78 169-246 756-841 (1049)
94 3nmz_A APC variant protein; pr 80.6 4.2 0.00014 45.4 9.0 147 246-393 286-450 (458)
95 2iw3_A Elongation factor 3A; a 76.6 12 0.0004 45.8 11.8 144 247-393 55-204 (986)
96 3nmw_A APC variant protein; AR 76.4 25 0.00087 37.5 13.4 143 246-391 127-290 (354)
97 3nmz_A APC variant protein; pr 76.2 30 0.001 38.4 14.2 166 224-392 215-407 (458)
98 3oc3_A Helicase MOT1, MOT1; re 75.6 8.3 0.00028 44.1 9.2 134 244-388 297-431 (800)
99 3grl_A General vesicular trans 75.5 19 0.00066 41.7 12.6 68 326-393 122-195 (651)
100 1vsy_5 Proteasome activator BL 74.3 1.6E+02 0.0053 36.0 21.0 71 322-393 797-873 (997)
101 2x1g_F Cadmus; transport prote 72.4 1.7E+02 0.0057 35.0 35.0 108 243-353 731-856 (971)
102 3s51_A Protein FACI, fanconi a 69.2 1.7E+02 0.0058 36.6 19.3 123 229-355 422-544 (1308)
103 3l9t_A Putative uncharacterize 67.5 61 0.0021 32.8 12.8 90 289-389 73-164 (240)
104 3l6x_A Catenin delta-1; cateni 66.9 59 0.002 37.3 14.2 146 247-393 309-476 (584)
105 1xm9_A Plakophilin 1; armadill 64.6 58 0.002 35.6 13.3 108 245-355 43-172 (457)
106 3ibv_A Exportin-T; karyopherin 63.3 2.6E+02 0.009 33.9 22.5 130 224-357 413-568 (980)
107 3oc3_A Helicase MOT1, MOT1; re 60.9 14 0.00047 42.3 7.1 143 43-214 307-449 (800)
108 4gmo_A Putative uncharacterize 59.5 13 0.00044 43.4 7.0 70 246-316 35-105 (684)
109 1vsy_4 Proteasome activator BL 58.1 1.1E+02 0.0036 36.5 14.6 168 73-271 226-408 (799)
110 1lsh_A Lipovitellin (LV-1N, LV 53.1 65 0.0022 39.6 12.1 136 240-390 389-540 (1056)
111 1juq_A ADP-ribosylation factor 50.9 44 0.0015 32.0 8.1 105 287-396 12-130 (171)
112 3g2s_A C-terminal fragment of 46.6 74 0.0025 29.7 8.7 102 287-392 10-125 (149)
113 4atg_A TAF6; transcription, TF 45.7 57 0.0019 32.0 8.0 107 189-315 67-177 (196)
114 1x5b_A Signal transducing adap 45.6 1E+02 0.0035 29.1 9.7 104 289-397 16-128 (163)
115 3grl_A General vesicular trans 45.1 2.4E+02 0.0082 32.6 14.3 160 233-393 46-241 (651)
116 3jui_A Translation initiation 43.1 1.8E+02 0.0061 27.9 11.2 29 328-356 39-67 (182)
117 3a6p_A Exportin-5; exportin-5, 39.3 2.4E+02 0.0084 34.9 14.4 108 242-358 8-128 (1204)
118 3ldz_A STAM-1, signal transduc 39.3 1.2E+02 0.0041 27.7 8.9 80 314-396 32-116 (140)
119 1mhq_A ADP-ribosylation factor 37.8 89 0.0031 29.0 7.8 79 315-396 29-118 (148)
120 3l6x_A Catenin delta-1; cateni 37.4 2.4E+02 0.0082 32.2 12.8 108 245-355 354-476 (584)
121 1h2v_C 80 kDa nuclear CAP bind 37.2 5.8E+02 0.02 30.1 22.8 106 227-340 480-599 (771)
122 4gmo_A Putative uncharacterize 36.4 28 0.00096 40.5 4.9 65 326-392 35-104 (684)
123 3a6p_A Exportin-5; exportin-5, 32.4 6.8E+02 0.023 30.9 16.8 170 185-357 60-278 (1204)
124 3qml_C Protein SLS1, nucleotid 31.9 4E+02 0.014 27.9 12.1 112 281-394 65-190 (315)
125 3zyq_A Hepatocyte growth facto 31.1 2.2E+02 0.0076 28.1 9.9 102 288-392 8-117 (226)
126 1h2v_C 80 kDa nuclear CAP bind 30.5 82 0.0028 37.3 7.6 50 226-275 350-403 (771)
127 1elk_A Target of MYB1; superhe 29.0 1.9E+02 0.0064 27.0 8.5 105 287-396 15-132 (157)
128 2zu6_B Programmed cell death p 28.4 5.1E+02 0.018 26.8 13.1 157 346-530 22-192 (307)
129 1ldd_A APC2WHB, anaphase promo 25.4 49 0.0017 27.3 3.1 29 59-87 28-60 (74)
130 3gae_A Protein DOA1; UFD3, CDC 25.0 4.5E+02 0.015 26.3 11.1 59 257-315 101-168 (253)
131 1upk_A MO25 protein; transfera 24.5 6.5E+02 0.022 26.6 20.3 171 217-397 55-283 (341)
132 3tt9_A Plakophilin-2; cell adh 24.5 1.8E+02 0.0062 29.0 7.9 64 328-391 54-122 (233)
133 3g2s_A C-terminal fragment of 24.3 1.5E+02 0.0051 27.6 6.7 97 159-257 37-143 (149)
134 1dvp_A HRS, hepatocyte growth 24.2 1.8E+02 0.0061 28.5 7.8 80 314-396 32-117 (220)
135 2ygw_A Malonyl-COA decarboxyla 22.2 8.1E+02 0.028 26.9 13.1 44 447-490 33-82 (460)
136 3tt9_A Plakophilin-2; cell adh 21.6 2.9E+02 0.01 27.4 8.8 108 247-355 9-124 (233)
137 1upk_A MO25 protein; transfera 21.5 7.4E+02 0.025 26.2 23.3 132 221-354 176-334 (341)
138 1vdy_A Hypothetical protein (R 21.5 1.6E+02 0.0055 27.2 6.3 84 286-394 48-131 (140)
139 3hjl_A Flagellar motor switch 21.2 7.3E+02 0.025 26.0 14.0 41 456-496 28-73 (329)
140 3jxy_A Alkylpurine DNA glycosy 20.1 6.1E+02 0.021 24.7 15.5 59 326-390 166-224 (232)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.23 E-value=3.4e-07 Score=110.30 Aligned_cols=329 Identities=13% Similarity=0.139 Sum_probs=196.3
Q ss_pred cCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC--
Q 039884 45 HQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID-- 122 (757)
Q Consensus 45 ~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~-- 122 (757)
.+.|.+||.+.|.-|-..++-+=+ ++++++...|-..++.. |.+++ + . =+..+-+.++.+=. .|-+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~--~~~~~~~~~ik~~ll~~---l~~~~-~-~-vr~~~a~~i~~ia~----~~~~~~ 125 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQ--NFPNGVTDFIKSECLNN---IGDSS-P-L-IRATVGILITTIAS----KGELQN 125 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGG--GCCHHHHHHHHHHHHTT---TTCSS-H-H-HHHHHHHHHHHHHH----HTTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHH---HcCCC-H-H-HHHHHHHHHHHHHH----hcCccc
Confidence 678999999999888777643211 24444444454555444 55543 2 1 22233333333311 1222
Q ss_pred chHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCC-------hhHHHHHHHHhhccccCCcchHHHHHHHH
Q 039884 123 CNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETS-------LPLLEVVLWNLVKQEKDSPYAASQLAVSV 195 (757)
Q Consensus 123 ~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~-------~~lld~Il~~l~~~~~~~~~~a~~lA~~v 195 (757)
-.+++..+++ .++ .+. ..+...-+.++..+.++... ...++.++..|+..-++.++.-+.-|...
T Consensus 126 wp~ll~~L~~----~l~---~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a 197 (852)
T 4fdd_A 126 WPDLLPKLCS----LLD---SED-YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 197 (852)
T ss_dssp CTTHHHHHHH----HHS---CSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred cHHHHHHHHH----HHc---CCC-HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 2356666654 443 222 23444455555666554221 12366677666654444445545555444
Q ss_pred Hhhch----hhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHh----hHHhhhhhhcCCChHHHHHHH
Q 039884 196 IRNCA----EKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLA----VIPNLIQELLVDQVDVRIKAV 267 (757)
Q Consensus 196 i~~~~----~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~----ViP~l~~eL~sd~~~~R~~At 267 (757)
+.... ..+.+.+..++..+..-....+.++++.+.+.+..+.+..|+.+.. ++|.+-.-+..+++.+|..|.
T Consensus 198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 277 (852)
T ss_dssp HHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 43322 2222223333333221111123467778888999999988877654 566666677788999999999
Q ss_pred HHHHHHhcCCCC-chh-hhcHHHHHHHHhhc-----------cC-----------CCHhHHHHHHHHhHHHHhcCCCcch
Q 039884 268 NLIGKICAQPDN-CLA-DRYPELFVEFLKRF-----------SD-----------KSAEVRLNALRCAKACYLGGPFRKE 323 (757)
Q Consensus 268 ~llG~mfs~~~~-~~~-~~~~~~w~~fL~R~-----------~D-----------~s~~VR~~~v~~~~~il~~~~~~~~ 323 (757)
+.++.+...+.. ++. ...+.+....+... .| .+-.||....++...+....+. ..
T Consensus 278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~ 356 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-EL 356 (852)
T ss_dssp HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GG
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HH
Confidence 999987543210 111 11123333333333 33 4567898877777665554443 34
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc---CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 324 SREILAALESRLLDFDDRVRTEAVIVACDLARSHL---KFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 324 ~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~---~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
...+++.+...+.|++++||.+|+.+++.++.... ...-+.++..+...+.|.++.||..|+..||++-..
T Consensus 357 ~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 357 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999985332 222367889999999999999999999999987653
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.01 E-value=1.8e-05 Score=95.17 Aligned_cols=332 Identities=13% Similarity=0.111 Sum_probs=198.6
Q ss_pred ccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhh-hhhhhhccC-
Q 039884 44 LHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARS-KCFVIMLDI- 121 (757)
Q Consensus 44 L~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~v-ks~vl~~Dl- 121 (757)
|...++.||..+|-|++.|.+..-|+ +..+++..++..+ .++ ++ ..+..-+..+..+ +.+--..+-
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~------~wp~ll~~L~~~l---~~~-~~--~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQ------NWPDLLPKLCSLL---DSE-DY--NTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTT------TCTTHHHHHHHHH---SCS-SH--HHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHH---cCC-CH--HHHHHHHHHHHHHHHHhHHHhchh
Confidence 67888999999999999999986221 2223344444333 333 22 2222333333222 111100110
Q ss_pred CchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCC--hhHHHHHHHHhhccccCCcc----hHHHHHHHH
Q 039884 122 DCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETS--LPLLEVVLWNLVKQEKDSPY----AASQLAVSV 195 (757)
Q Consensus 122 ~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~--~~lld~Il~~l~~~~~~~~~----~a~~lA~~v 195 (757)
.....+..++..|+...+ +. ...|...-...+..++..... .+.++.++..+.....+..+ .|...-..+
T Consensus 167 ~~~~~~~~il~~l~~~l~---~~-~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFK---HS-SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp SSSSCHHHHHHHHTTTTT---CS-SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 001234556666666654 33 345666666667666643211 12233344333332222222 333333456
Q ss_pred HhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhh------cCchhHHhhHHhhhhhhc----------CC-
Q 039884 196 IRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQ------CSPQMLLAVIPNLIQELL----------VD- 258 (757)
Q Consensus 196 i~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~------~~P~lL~~ViP~l~~eL~----------sd- 258 (757)
.....+.+.+++.+.+.-++......+.+++..+-+.+..+.+ ..+..+..++|.+-..+. .|
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 6777777888776665544321111233455555555555543 234455666777754441 22
Q ss_pred -----------ChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC--cchHH
Q 039884 259 -----------QVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF--RKESR 325 (757)
Q Consensus 259 -----------~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~~~~~ 325 (757)
+-.+|..|...+|.+....+. ...|.+...+.....|.++.+|...+.....+....+. .....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~ 399 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP 399 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 124699999999998654332 23355666666677899999999998888876644331 12346
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc----cCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSH----LKFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~----~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
++++.|...+.|++..||.+|+.++..++... ....-..++..+.+.+.|.++.||..|...|+.+-..
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888532 2233458899999999999999999999999988654
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.97 E-value=1e-07 Score=108.42 Aligned_cols=323 Identities=14% Similarity=0.125 Sum_probs=197.7
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC
Q 039884 43 LLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID 122 (757)
Q Consensus 43 lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~ 122 (757)
+.++.+..+|...+.++..+. |..| +....+++.++... +.|++ ..-+...++.+..+- -.++
T Consensus 134 l~~~~~~~~R~~a~~~l~~~~----~~~~--~~~~~~l~~~l~~l---~~d~~---~~VR~~a~~~l~~l~-----~~~~ 196 (588)
T 1b3u_A 134 LAGGDWFTSRTSACGLFSVCY----PRVS--SAVKAELRQYFRNL---CSDDT---PMVRRAAASKLGEFA-----KVLE 196 (588)
T ss_dssp HHTCSSHHHHHHHGGGHHHHT----TTSC--HHHHHHHHHHHHHH---HTCSC---HHHHHHHHHHHHHHH-----HTSC
T ss_pred HhcCCCcHHHHHHHHHHHHHH----HhcC--HHHHHHHHHHHHHH---hCCCC---HHHHHHHHHHHHHHH-----HHhc
Confidence 345667888888777776654 3322 33455666665543 34442 223445555554331 1123
Q ss_pred chHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCChh----HHHHHHHHhhccccCCcchHHHHHHHHHhh
Q 039884 123 CNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLP----LLEVVLWNLVKQEKDSPYAASQLAVSVIRN 198 (757)
Q Consensus 123 ~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~~~----lld~Il~~l~~~~~~~~~~a~~lA~~vi~~ 198 (757)
.+.....++..+....+ ++. ..|...-...+..+.+...+.. ++..+. .+.. +.++.-+..|...+..
T Consensus 197 ~~~~~~~l~~~l~~~~~---d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~-~~~~---d~~~~vR~~a~~~l~~ 268 (588)
T 1b3u_A 197 LDNVKSEIIPMFSNLAS---DEQ-DSVRLLAVEACVNIAQLLPQEDLEALVMPTLR-QAAE---DKSWRVRYMVADKFTE 268 (588)
T ss_dssp HHHHHHTHHHHHHHHHT---CSC-HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH-HHHT---CSSHHHHHHHHHTHHH
T ss_pred HHhHHHHHHHHHHHHhc---CCc-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHcc---CCCHHHHHHHHHHHHH
Confidence 33344556666666554 332 3444444444444433222211 233322 2222 2223333333332222
Q ss_pred chhh-----hhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCc------hhHHhhHHhhhhhhcCCChHHHHHHH
Q 039884 199 CAEK-----LEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSP------QMLLAVIPNLIQELLVDQVDVRIKAV 267 (757)
Q Consensus 199 ~~~~-----l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P------~lL~~ViP~l~~eL~sd~~~~R~~At 267 (757)
-+.. ..+.+-.+|...+.+. ..+++..+..-+.++....+ ..+..++|.+..-+...+..+|..|.
T Consensus 269 l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~ 345 (588)
T 1b3u_A 269 LQKAVGPEITKTDLVPAFQNLMKDC---EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALA 345 (588)
T ss_dssp HHHHHCHHHHHHTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHhCcccchhHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2221 1122223333333322 23566666677777777665 35778999999989999999999999
Q ss_pred HHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHH
Q 039884 268 NLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAV 347 (757)
Q Consensus 268 ~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV 347 (757)
..+|.+...-+.. ...+.+...++..++|.++.||...++....+....+.......+++.|...+.|.+++||.+++
T Consensus 346 ~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~ 423 (588)
T 1b3u_A 346 SVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 423 (588)
T ss_dssp TTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 9999986432221 12455666777788899999999998888777654432223457889999999999999999999
Q ss_pred HHHHHhhhh-ccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 348 IVACDLARS-HLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 348 ~~i~~l~~~-~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
.++..++.. ......+.++..+...+.|..+.||..|+..|+.+....
T Consensus 424 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 424 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 999988753 223456788999999999999999999999999998864
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.94 E-value=3.5e-06 Score=95.72 Aligned_cols=170 Identities=17% Similarity=0.064 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHhhcCchh--HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCC
Q 039884 223 GDLKEFYHEIIFKIFQCSPQM--LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKS 300 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~l--L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s 300 (757)
..+++.+-+.+.++....|.- ...++|.+..-..+++...|..|..++|.+...-+. ...+.+...+..-..|.+
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~ 177 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS---AVKAELRQYFRNLCSDDT 177 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH---HHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhCCCC
Confidence 456677888888888876642 334677777666788999999999999998754331 223556666666678999
Q ss_pred HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHhccCChh
Q 039884 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPEKLISEATERLRDKKIS 379 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~~ll~~l~eR~rDKk~~ 379 (757)
+.||...++....+....+......++++.|...+.|.++.||.+|+.++..++.... ....+.++..+...+.|+.+.
T Consensus 178 ~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~ 257 (588)
T 1b3u_A 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR 257 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHH
Confidence 9999999999988776555323345788999999999999999999999988875321 112245666777788999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 039884 380 IRKKALLKLLEVYREY 395 (757)
Q Consensus 380 VR~~A~~~L~~lY~~~ 395 (757)
||..|+..|+.+....
T Consensus 258 vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 258 VRYMVADKFTELQKAV 273 (588)
T ss_dssp HHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.93 E-value=0.00013 Score=86.93 Aligned_cols=329 Identities=14% Similarity=0.150 Sum_probs=189.3
Q ss_pred CCchhHHHHHHHHHHHHhhhCC-------C--CCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhh
Q 039884 47 NDKDIRLSVATCVSELFRILAP-------E--PPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVI 117 (757)
Q Consensus 47 kd~~Vr~~~acCl~dIlRi~AP-------d--aPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl 117 (757)
.+..||.+.+.+|-..++...+ . ...+++....|=..+++ +|.+++... .+...++..++..- .
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~---~l~~~~~~~-~~~~~~l~~i~~~~---~ 121 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLH---TLGTETYRP-SSASQCVAGIACAE---I 121 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHH---HTTTCCSSS-CHHHHHHHHHHHHH---G
T ss_pred CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHH---HhCCCcHHH-HHHHHHHHHHHHhh---C
Confidence 5788999999998886632100 0 11333333333333444 455554444 55566666665541 1
Q ss_pred hccCCchHHHHHHHHHHHHhhhcCCCc-chhhHHHHHHHHHHHHhhcCCC---hhHHHHHHHHhhccccCC--cchHHHH
Q 039884 118 MLDIDCNDLVLQMFNNFFSVVRLCSEP-HLSSLTNHMLSTMTHIINEETS---LPLLEVVLWNLVKQEKDS--PYAASQL 191 (757)
Q Consensus 118 ~~Dl~~~~li~~lF~~ff~~v~~~~~~-~~~~v~~~m~~Il~~vI~E~~~---~~lld~Il~~l~~~~~~~--~~~a~~l 191 (757)
..+ .-.+++..++ .... .+ ....+....+.++..+.++..+ .+.+..++..|...-.+. ++.-+..
T Consensus 122 ~~~-~w~~ll~~l~----~~l~---~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~ 193 (876)
T 1qgr_A 122 PVN-QWPELIPQLV----ANVT---NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193 (876)
T ss_dssp GGT-CCTTHHHHHH----HHHH---CTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHH
T ss_pred ccc-ccHHHHHHHH----HHHh---CCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 101 1234555554 4433 22 1234555566777777665321 223333333332211111 2333444
Q ss_pred HHHHHhhchhhhhH---------HHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHH-----hhHHhhhhhhcC
Q 039884 192 AVSVIRNCAEKLEP---------FVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLL-----AVIPNLIQELLV 257 (757)
Q Consensus 192 A~~vi~~~~~~l~~---------~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~-----~ViP~l~~eL~s 257 (757)
|.+.+......+.. ++-+.+..... ..+.+++..+.+.+..+....|..+. .++|.+-..+..
T Consensus 194 a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (876)
T 1qgr_A 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (876)
T ss_dssp HHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 54444443322221 22222222221 12235666777888888887776543 567777777778
Q ss_pred CChHHHHHHHHHHHHHhcC--------------------CCCchhhhc-HHHHHHHHhhcc-------CCCHhHHHHHHH
Q 039884 258 DQVDVRIKAVNLIGKICAQ--------------------PDNCLADRY-PELFVEFLKRFS-------DKSAEVRLNALR 309 (757)
Q Consensus 258 d~~~~R~~At~llG~mfs~--------------------~~~~~~~~~-~~~w~~fL~R~~-------D~s~~VR~~~v~ 309 (757)
+++.+|..|.+.++.+... +...+.+.+ +.+....+.... |-+..+|....+
T Consensus 271 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~ 350 (876)
T 1qgr_A 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHH
Confidence 8999999999888877532 111222211 333333333332 456789998877
Q ss_pred HhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CC---CCHHHHHHHHHHhccCChhHHHHHH
Q 039884 310 CAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KF---VPEKLISEATERLRDKKISIRKKAL 385 (757)
Q Consensus 310 ~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~---v~~~ll~~l~eR~rDKk~~VR~~A~ 385 (757)
+...+....+. .....+++.+...+.|++++||.+|+.++..++.... +. .-+.++..+...+.|.++.||..|+
T Consensus 351 ~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 351 CLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77766554442 3456788999999999999999999999998874321 11 1135777888888999999999999
Q ss_pred HHHHHHHHH
Q 039884 386 LKLLEVYRE 394 (757)
Q Consensus 386 ~~L~~lY~~ 394 (757)
..|+++-..
T Consensus 430 ~~l~~~~~~ 438 (876)
T 1qgr_A 430 WTVGRICEL 438 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.85 E-value=6.7e-05 Score=89.34 Aligned_cols=146 Identities=10% Similarity=0.073 Sum_probs=113.3
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcH-HHHHHHHhhccCCCHhHHHHHHHHhHHHHhcC-------
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYP-ELFVEFLKRFSDKSAEVRLNALRCAKACYLGG------- 318 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~-~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~------- 318 (757)
+++.|..-+.+++..+|..|.+.++++....+..+....+ .+|..++....|.+..||...+++...+....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5666666778899999999999999998764444555455 89999999999999999999988877665431
Q ss_pred ----------CC--cchHHHHHHHHHHhhcCCC-------hhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChh
Q 039884 319 ----------PF--RKESREILAALESRLLDFD-------DRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKIS 379 (757)
Q Consensus 319 ----------~~--~~~~~ei~~~L~~rL~D~D-------ekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~ 379 (757)
+. .....++++.+...+.+.| ..||.++..++..++......+-+.++..+.+.+.|.+|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 384 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWR 384 (861)
T ss_dssp HHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHH
T ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChh
Confidence 11 1122567888888887543 4899999999999886544445567888888899999999
Q ss_pred HHHHHHHHHHHHH
Q 039884 380 IRKKALLKLLEVY 392 (757)
Q Consensus 380 VR~~A~~~L~~lY 392 (757)
+|+.|+..+|.+-
T Consensus 385 ~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 385 NREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.83 E-value=0.00031 Score=83.54 Aligned_cols=170 Identities=16% Similarity=0.112 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHHhhcCc-hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC-CchhhhcHHHHHHHHhhccCCCH
Q 039884 224 DLKEFYHEIIFKIFQCSP-QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD-NCLADRYPELFVEFLKRFSDKSA 301 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P-~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~-~~~~~~~~~~w~~fL~R~~D~s~ 301 (757)
.++..+.+.+..+....| .++..++|.+..-|.+.+...|..|+..+|.+....+ ..+....+.++...++...|.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~ 425 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCH
T ss_pred cHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 345556677777776555 5566799999999999999999999999999975543 33444557788889999999999
Q ss_pred hHHHHHHHHhHHHHhcCC----CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCC---CHHHHHHHH
Q 039884 302 EVRLNALRCAKACYLGGP----FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFV---PEKLISEAT 370 (757)
Q Consensus 302 ~VR~~~v~~~~~il~~~~----~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v---~~~ll~~l~ 370 (757)
.||.........+....+ .......+++.|.+.+.|. .+||.+|+.++..+....- ..+ -+.++..+.
T Consensus 426 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~ 504 (861)
T 2bpt_A 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 999987765555443211 1234568899999999886 9999999999988764321 111 257788888
Q ss_pred HHhc--cCChhHHHHHHHHHHHHHHH
Q 039884 371 ERLR--DKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 371 eR~r--DKk~~VR~~A~~~L~~lY~~ 394 (757)
..+. |.++.||..|+..++.+-..
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 8887 55589999999999998875
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.82 E-value=2.6e-06 Score=106.63 Aligned_cols=335 Identities=13% Similarity=0.180 Sum_probs=220.5
Q ss_pred ccCCCchhHHHHHHHHHHHHhhhCCC---CCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhcc
Q 039884 44 LHQNDKDIRLSVATCVSELFRILAPE---PPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLD 120 (757)
Q Consensus 44 L~hkd~~Vr~~~acCl~dIlRi~APd---aPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~D 120 (757)
|.+.+..||.-.+-||..|.+.+.|+ ..+......+++..+++.+. + ++....+.+.++.+.++=... --.
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~---~--~~~~~~~~~al~~l~~~~~~~-~~~ 168 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA---K--QEDVSVQLEALDIMADMLSRQ-GGL 168 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS---C--CSCHHHHHHHHHHHHHHHHHT-CSS
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc---C--CCchHHHHHHHHHHHHHHHHh-HhH
Confidence 46777889999999999999998876 34444567777777777664 2 233456667777776652110 012
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCC---ChhHHHHHHHHhhcccc-CCcchHHHHHHHHH
Q 039884 121 IDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEET---SLPLLEVVLWNLVKQEK-DSPYAASQLAVSVI 196 (757)
Q Consensus 121 l~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~---~~~lld~Il~~l~~~~~-~~~~~a~~lA~~vi 196 (757)
+. ..+.++...++.... +.. ..|.......+..++.... -.++++.++..|..... .....+...-..+.
T Consensus 169 l~--~~~~~ll~~l~~~L~---~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 169 LV--NFHPSILTCLLPQLT---SPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp CT--TTHHHHHHHHGGGGG---CSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHc---CCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 22 234566666677665 333 3567666777777765421 13467777766655422 22234445445566
Q ss_pred hhchhhhhHHHHHHhh---hhccCCCccccchHHHHHHHHHHHhhcCchh----HHhhHHhhhhhhcCC-----------
Q 039884 197 RNCAEKLEPFVCGFLT---SCFLDRDAVEGDLKEFYHEIIFKIFQCSPQM----LLAVIPNLIQELLVD----------- 258 (757)
Q Consensus 197 ~~~~~~l~~~i~~~~~---~~~~~~~~~~~~l~~~~~eli~el~~~~P~l----L~~ViP~l~~eL~sd----------- 258 (757)
...+..+.+++...+. ..+.+ .+.++++.+.+.+..+.+.+|+- +..++|.+-.-+..+
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d---~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSS---CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6666666654433322 22222 23456667777788777777763 444555554333210
Q ss_pred --------------------------ChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhH
Q 039884 259 --------------------------QVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAK 312 (757)
Q Consensus 259 --------------------------~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~ 312 (757)
...+|..|...++.+....+..+..-++.+...++.++.|.+..||..+++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 399 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYL 399 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 124699999999999875554577777888888999999999999999988877
Q ss_pred HHHhcCCC---------------------cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCC---HHHHHH
Q 039884 313 ACYLGGPF---------------------RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVP---EKLISE 368 (757)
Q Consensus 313 ~il~~~~~---------------------~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~---~~ll~~ 368 (757)
.++..... ......+++.+.+.+.|.+++||.+++.++.++.......+. +.++..
T Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~ 479 (1230)
T 1u6g_C 400 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 479 (1230)
T ss_dssp HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHH
T ss_pred HHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHH
Confidence 77653110 112346788888889999999999999999998865433333 588899
Q ss_pred HHHHhccCCh--hHHHHHHHHHHHHHH
Q 039884 369 ATERLRDKKI--SIRKKALLKLLEVYR 393 (757)
Q Consensus 369 l~eR~rDKk~--~VR~~A~~~L~~lY~ 393 (757)
+.+.+.|++. .||.+|+..++.+..
T Consensus 480 l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 480 IIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 9999999986 999999999998865
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.81 E-value=5.8e-05 Score=94.46 Aligned_cols=329 Identities=13% Similarity=0.145 Sum_probs=196.9
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC
Q 039884 43 LLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID 122 (757)
Q Consensus 43 lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~ 122 (757)
.|.+++..||...+-||..+..-. |+ .++..|+..++.. |.|++..- +......++.+- .+++
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~-~~-----~~~~~i~~~Ll~~---l~d~~~~v---R~~a~~~L~~i~-----~~l~ 118 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKV-KE-----YQVETIVDTLCTN---MLSDKEQL---RDISSIGLKTVI-----GELP 118 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTS-CH-----HHHHHHHHHHHHH---TTCSSSHH---HHHHHHHHHHHH-----HHCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhC-CH-----HHHHHHHHHHHHH---hcCCcHHH---HHHHHHHHHHHH-----HhCC
Confidence 466899999999999999998743 22 5677777776665 45554321 223334443321 1222
Q ss_pred c--------hHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCC--ChhHHHHHHHHhhccccCCcchHHHHH
Q 039884 123 C--------NDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEET--SLPLLEVVLWNLVKQEKDSPYAASQLA 192 (757)
Q Consensus 123 ~--------~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~--~~~lld~Il~~l~~~~~~~~~~a~~lA 192 (757)
. .....+++..++.... +.....+....+.++..+++... -.|.++.++..|++.-.+.++.-+.-|
T Consensus 119 ~~~~~~~~~~~~~~~llp~L~~~l~---~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a 195 (1230)
T 1u6g_C 119 PASSGSALAANVCKKITGRLTSAIA---KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRT 195 (1230)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHS---CCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHH
T ss_pred CcccccchHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 1 1245666666667664 22334677778888888886431 123445555555543333333334444
Q ss_pred HHHH----hhchhhhhHH-HHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchh----HHhhHHhhhhhhcCCChHHH
Q 039884 193 VSVI----RNCAEKLEPF-VCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQM----LLAVIPNLIQELLVDQVDVR 263 (757)
Q Consensus 193 ~~vi----~~~~~~l~~~-i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~l----L~~ViP~l~~eL~sd~~~~R 263 (757)
...+ ..+++.+-+. +..++.......+ ...+..+-+.+..+....|.. +..++|.+-..+..+++.+|
T Consensus 196 ~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~---~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 196 IIALGHLVMSCGNIVFVDLIEHLLSELSKNDS---MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHHHTTTC----CTTHHHHHHHHHHHTCS---SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3333 3333222112 2222222111111 233334566777777766643 45688999988988999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhc-------------------------------------cCCCHhHHHH
Q 039884 264 IKAVNLIGKICAQPDNCLADRYPELFVEFLKRF-------------------------------------SDKSAEVRLN 306 (757)
Q Consensus 264 ~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~-------------------------------------~D~s~~VR~~ 306 (757)
..|.+.+|.+...-+..+..--+.+....+... .|.+..||..
T Consensus 273 ~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~ 352 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA 352 (1230)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence 999999999876544333222222222222211 2445678998
Q ss_pred HHHHhHHHHhcCCC--cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----------------------CCCC
Q 039884 307 ALRCAKACYLGGPF--RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL----------------------KFVP 362 (757)
Q Consensus 307 ~v~~~~~il~~~~~--~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----------------------~~v~ 362 (757)
..+....+....|. .....++++.+..++.|.++.||.+++.++..+....- ...-
T Consensus 353 A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV 432 (1230)
T ss_dssp HHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh
Confidence 88888777765553 23344667888899999999999999999877653211 1122
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 363 EKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 363 ~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+.++..+...++|+++.||..++..|+.+-..
T Consensus 433 ~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 433 PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 45777777789999999999999999987664
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.73 E-value=1.7e-05 Score=87.02 Aligned_cols=333 Identities=14% Similarity=0.150 Sum_probs=195.7
Q ss_pred CCchhHHHHHHHHHHHHhhhCCC---------CCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhh
Q 039884 47 NDKDIRLSVATCVSELFRILAPE---------PPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVI 117 (757)
Q Consensus 47 kd~~Vr~~~acCl~dIlRi~APd---------aPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl 117 (757)
.+..||.+.|-.|-..++-+-++ ...++++...|-..++.. |.+++... .+....|..++..-.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~---l~~~~~~v-~~~~~~i~~ia~~~~--- 121 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT---LGTETYRP-SSASQCVAGIACAEI--- 121 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---TTCCCSSS-CSHHHHHHHHHHHHG---
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHH---hCCCCchh-hHHHHHHHHHHHHhc---
Confidence 37889999999998887432100 113334434444444443 55555444 555566666654420
Q ss_pred hccCCchHHHHHHHHHHHHhhhcCCCcc-hhhHHHHHHHHHHHHhhcCCC---hhHHHHHHHHhhccccCC--cchHHHH
Q 039884 118 MLDIDCNDLVLQMFNNFFSVVRLCSEPH-LSSLTNHMLSTMTHIINEETS---LPLLEVVLWNLVKQEKDS--PYAASQL 191 (757)
Q Consensus 118 ~~Dl~~~~li~~lF~~ff~~v~~~~~~~-~~~v~~~m~~Il~~vI~E~~~---~~lld~Il~~l~~~~~~~--~~~a~~l 191 (757)
-+-.-.+++..+++. ++ .+. ...+....+.++..+.++..+ .+.++.++..|+..-.+. ++.-+..
T Consensus 122 -~~~~w~~ll~~L~~~----l~---~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~ 193 (462)
T 1ibr_B 122 -PVNQWPELIPQLVAN----VT---NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193 (462)
T ss_dssp -GGTCCTTHHHHHHHH----HH---CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred -cccccHHHHHHHHHH----hc---cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 010123566666544 33 221 234555666777777765311 223333333332211221 2333444
Q ss_pred HHHHHhhchh----hhhH-HHHHHhhhhcc-CCCccccchHHHHHHHHHHHhhcCchhHH-----hhHHhhhhhhcCCCh
Q 039884 192 AVSVIRNCAE----KLEP-FVCGFLTSCFL-DRDAVEGDLKEFYHEIIFKIFQCSPQMLL-----AVIPNLIQELLVDQV 260 (757)
Q Consensus 192 A~~vi~~~~~----~l~~-~i~~~~~~~~~-~~~~~~~~l~~~~~eli~el~~~~P~lL~-----~ViP~l~~eL~sd~~ 260 (757)
|...+..+.. .+.. ....|+...+. .....+.+++..+.+.+..+....|+.+. .++|.+-.-+..+++
T Consensus 194 a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 273 (462)
T 1ibr_B 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID 273 (462)
T ss_dssp HHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 4444433221 1111 01122222111 01122345667788888888887776543 566666666778899
Q ss_pred HHHHHHHHHHHHHhcC--------------------CCCchhhhc-HHHHHHHHhhcc-------CCCHhHHHHHHHHhH
Q 039884 261 DVRIKAVNLIGKICAQ--------------------PDNCLADRY-PELFVEFLKRFS-------DKSAEVRLNALRCAK 312 (757)
Q Consensus 261 ~~R~~At~llG~mfs~--------------------~~~~~~~~~-~~~w~~fL~R~~-------D~s~~VR~~~v~~~~ 312 (757)
.+|..|.+.++.+... +...+.+.| +.+....++... |.+..+|.....+..
T Consensus 274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~ 353 (462)
T 1ibr_B 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM 353 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH
Confidence 9999999988887542 112233222 334444434443 345689998888888
Q ss_pred HHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc----cCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 313 ACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSH----LKFVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 313 ~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~----~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
.+....+. .....+++.+...+.|++++||.+|+.+++.++... +...-+.++..+...+.|.++.||..|...|
T Consensus 354 ~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l 432 (462)
T 1ibr_B 354 LLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432 (462)
T ss_dssp HHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 77666553 445678999999999999999999999999998522 2222257899999999999999999999999
Q ss_pred HHHHHHH
Q 039884 389 LEVYREY 395 (757)
Q Consensus 389 ~~lY~~~ 395 (757)
+++-...
T Consensus 433 ~~~~~~~ 439 (462)
T 1ibr_B 433 GRICELL 439 (462)
T ss_dssp HHHHHHG
T ss_pred HHHHHhc
Confidence 9987653
No 11
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.65 E-value=1.4e-06 Score=89.01 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=124.7
Q ss_pred HHhhHHhhhhhhc-CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcc
Q 039884 244 LLAVIPNLIQELL-VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRK 322 (757)
Q Consensus 244 L~~ViP~l~~eL~-sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~ 322 (757)
+..+++.|..-|. ..+..+|..|...+|.|...-+..|....+.+....+.++.|+++.||....+....+..+.+
T Consensus 54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--- 130 (242)
T 2qk2_A 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--- 130 (242)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---
Confidence 3567888888884 889999999999999998665667777788999999999999999999999999988876543
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-ccCCCC----HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 323 ESREILAALESRLLDFDDRVRTEAVIVACDLARS-HLKFVP----EKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 323 ~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~-~~~~v~----~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
..++++.|...+.|.+.+||.+++..+..+... ..+... +.++..+..-+.|+++.||..|+..++.++...
T Consensus 131 -~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 131 -LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999986533 222111 378888889999999999999999999999865
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.53 E-value=4.6e-05 Score=88.27 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=118.7
Q ss_pred cchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHh
Q 039884 223 GDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAE 302 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~ 302 (757)
..+++-.|--+..+.+..|+++.-+++.+...|.++|+.+|..|.+++|.+- .+ .++ +.+.....+-..|.++.
T Consensus 63 ~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~--~~~---~~l~~~l~~~L~d~~~~ 136 (591)
T 2vgl_B 63 LELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VD--KIT---EYLCEPLRKCLKDEDPY 136 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SG--GGH---HHHHHHHHHHSSCSCHH
T ss_pred HHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hH--HHH---HHHHHHHHHHcCCCChH
Confidence 3455556666677778889999999999999999999999999999999984 22 222 34555567777899999
Q ss_pred HHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCC----CCHHHHHHHHHHhccCCh
Q 039884 303 VRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKF----VPEKLISEATERLRDKKI 378 (757)
Q Consensus 303 VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~----v~~~ll~~l~eR~rDKk~ 378 (757)
||...+.+...+...+|+.-...++++.|...|.|+|..||.+|+.+++++....... +....+..+...+.|-.+
T Consensus 137 VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~ 216 (591)
T 2vgl_B 137 VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE 216 (591)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCc
Confidence 9999999999998888864322368899999999999999999999999998765422 223444444444444444
Q ss_pred hHHHHHHHHH
Q 039884 379 SIRKKALLKL 388 (757)
Q Consensus 379 ~VR~~A~~~L 388 (757)
-++...++.|
T Consensus 217 ~~q~~il~~l 226 (591)
T 2vgl_B 217 WGQIFILDCL 226 (591)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444444433
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.49 E-value=0.00032 Score=81.19 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=157.3
Q ss_pred hhHHHHHHHHhhccccCCcchHHHHHHHHH-hhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHH
Q 039884 167 LPLLEVVLWNLVKQEKDSPYAASQLAVSVI-RNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLL 245 (757)
Q Consensus 167 ~~lld~Il~~l~~~~~~~~~~a~~lA~~vi-~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~ 245 (757)
.+++-.+.+.|.+.-.+.++.-+.+|-.-+ +-....+.+++..-+..++.+ .+..+++.+-.-++.+++..|+.+.
T Consensus 81 ~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d---~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 81 PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKD---EDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSC---SCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHHHhhChhhcc
Confidence 344444556666555555666666775433 334455666665555555543 2446778888999999999999887
Q ss_pred --hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcc
Q 039884 246 --AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRK 322 (757)
Q Consensus 246 --~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~ 322 (757)
..+|.|..-|..+|..+|..|+..++++-...+.. +..-.+..+...++...|.++-.++..++....+. .++.+
T Consensus 158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~--~~~~~ 235 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN--PKDDR 235 (591)
T ss_dssp HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC--CCSHH
T ss_pred cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC--CCChH
Confidence 58999999999999999999999999997654322 23334566777888888899999998888665432 12234
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---ccCCCC---HHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 323 ESREILAALESRLLDFDDRVRTEAVIVACDLARS---HLKFVP---EKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 323 ~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~~~v~---~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
...++++.+..++.+.++.||.+|+.++..+... +...+. ..+...+. .+.+..+.||-.|+..|+.+-..
T Consensus 236 ~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 236 EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999887631 222221 22222333 23458899999999999999775
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.46 E-value=0.00015 Score=86.58 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=129.4
Q ss_pred chHHHHHHHHHHHhhcCc-hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC-CchhhhcHHHHHHHHhhccCCCH
Q 039884 224 DLKEFYHEIIFKIFQCSP-QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD-NCLADRYPELFVEFLKRFSDKSA 301 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P-~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~-~~~~~~~~~~w~~fL~R~~D~s~ 301 (757)
..++.+-..+..+....| .++..++|.+...|.+.+..+|..|...+|.+....+ ..+....+.++...+.-.+|.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~ 422 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 422 (876)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 455556667777766655 4566799999999999999999999999999976543 22445567788888999999999
Q ss_pred hHHHHHHHHhHHHHhcCCC----cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-----------------cCC
Q 039884 302 EVRLNALRCAKACYLGGPF----RKESREILAALESRLLDFDDRVRTEAVIVACDLARSH-----------------LKF 360 (757)
Q Consensus 302 ~VR~~~v~~~~~il~~~~~----~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~-----------------~~~ 360 (757)
.||.........+....+. ......+++.|...+.|. .+||.+++.++..+.... +.-
T Consensus 423 ~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~ 501 (876)
T 1qgr_A 423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501 (876)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred HHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH
Confidence 9999888888777655331 234568899999999995 999999999998887431 211
Q ss_pred CCHHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHH
Q 039884 361 VPEKLISEATERLRDK---KISIRKKALLKLLEVYRE 394 (757)
Q Consensus 361 v~~~ll~~l~eR~rDK---k~~VR~~A~~~L~~lY~~ 394 (757)
.-+.++..+...+.+. ...+|..++++++.+-..
T Consensus 502 ~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 2257888888877765 468999999999988664
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.45 E-value=6.1e-06 Score=81.15 Aligned_cols=121 Identities=21% Similarity=0.137 Sum_probs=93.0
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
.++|.|..-|..++..+|..|+..+|++ +. +..+..++....|.++.||...+.....+- .+
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~------ 137 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQI-GD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--DE------ 137 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--CG------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CH------
Confidence 4667777788888999999999999987 32 234445555667889999998877776542 11
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
+.++.|...+.|+|+.||.+|+.++..+. +++.+..+.+.+.|..+.||..|+..|+++
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIG-------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35677788888999999999999997773 466788888888899999999999988875
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.44 E-value=3.6e-06 Score=85.86 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=119.7
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcC-CCCchhhhcHHHHHHHHhhcc-CCCHhHHHHHHHHhHHHHhcCCC--c
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQ-PDNCLADRYPELFVEFLKRFS-DKSAEVRLNALRCAKACYLGGPF--R 321 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~-~~~~~~~~~~~~w~~fL~R~~-D~s~~VR~~~v~~~~~il~~~~~--~ 321 (757)
.+-|.+...+.+.+-.+|..|...|+.+... ++. ....|..++..+.+++. |.++.||....++...+...-.. .
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~-~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKL-ENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSB-CCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445677889999999999999999999876 432 24568899999999995 99999999988888876643111 2
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
.....+++.|.+++.|+...||.+++.++..+.... -.+.++..+.+.+.+|++.||..++..|+.+...+
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST---SLEAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 345689999999999999999999999998886532 13678999999999999999999999999987653
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.43 E-value=2.3e-05 Score=86.03 Aligned_cols=226 Identities=11% Similarity=0.066 Sum_probs=142.8
Q ss_pred hhHHHHHHHHhhcc--ccCCcchHHHHHHHHHhhc-hhhhhHHHH---HHhhhhccCCCccccchHHHHHHHHHHHhhcC
Q 039884 167 LPLLEVVLWNLVKQ--EKDSPYAASQLAVSVIRNC-AEKLEPFVC---GFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCS 240 (757)
Q Consensus 167 ~~lld~Il~~l~~~--~~~~~~~a~~lA~~vi~~~-~~~l~~~i~---~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~ 240 (757)
.+++..++..+-.+ +......|......++... .+.+.+++. ..+..++.+.+ .+..++..+-..+..+-.+.
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 44777777666543 2211122333334455544 333343333 33334343321 12344443444443332222
Q ss_pred chh-----H-HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcH-HHHHHHHhhccCCCHhHHHHHHHHhHH
Q 039884 241 PQM-----L-LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYP-ELFVEFLKRFSDKSAEVRLNALRCAKA 313 (757)
Q Consensus 241 P~l-----L-~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~-~~w~~fL~R~~D~s~~VR~~~v~~~~~ 313 (757)
.+. . ..++|.+...+.+++..+|..|.+.++.+....+..|....+ .+|...+....|.++.||...+++...
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 211 1 224666666778889999999999999998765544555566 899999999999999999988886665
Q ss_pred HHhcC-------------------CCcch----HHHHHHHHHHhhcCC-------ChhHHHHHHHHHHHhhhhccCCCCH
Q 039884 314 CYLGG-------------------PFRKE----SREILAALESRLLDF-------DDRVRTEAVIVACDLARSHLKFVPE 363 (757)
Q Consensus 314 il~~~-------------------~~~~~----~~ei~~~L~~rL~D~-------DekVR~aaV~~i~~l~~~~~~~v~~ 363 (757)
+.... +.... ...+++.+.+.+.+. ++.||.+|+.++..++....+.+-+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~ 365 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP 365 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH
Confidence 54321 11111 246777777777543 4589999999999888654344446
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 364 KLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 364 ~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
.++..+.+.+.|.++.+|..|+..+|.+-.
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 788888899999999999999999998763
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.41 E-value=8.4e-06 Score=80.78 Aligned_cols=187 Identities=18% Similarity=0.110 Sum_probs=122.5
Q ss_pred hhHHHHHHHHhhccccCCcchHHHHHHHHHhhchh-hhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHH
Q 039884 167 LPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAE-KLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLL 245 (757)
Q Consensus 167 ~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~-~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~ 245 (757)
.+.++.++..|-.+ ++.-+..|...+...++ ..-+.+...+. +. +..++..+-..+.++.. |
T Consensus 18 ~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~---~~~vr~~a~~aL~~~~~--~---- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGDERAVEPLIKALK----DE---DAWVRRAAADALGQIGD--E---- 80 (211)
T ss_dssp GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CS---CHHHHHHHHHHHHHHCC--G----
T ss_pred HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCccHHHHHHHHHc----CC---CHHHHHHHHHHHHhhCC--H----
Confidence 34566666554322 23444455544444443 33344433332 22 22344444444444432 2
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
..+|.|..-|.+++..+|..|+..+|++ +. +......+....|.++.||...+.....+- .+
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~------ 142 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQI-GD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--DE------ 142 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CH------
Confidence 4567777788899999999999999998 32 234455556668999999999888877641 11
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+.++.|...+.|+|+.||.+|+.++..+. +++.+..+.+.+.|..+.||..|...|+++-...
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIG-------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 35677788889999999999999998774 3677888888889999999999999999877643
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=0.00068 Score=78.97 Aligned_cols=418 Identities=11% Similarity=0.029 Sum_probs=218.6
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHH
Q 039884 248 IPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREI 327 (757)
Q Consensus 248 iP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei 327 (757)
+-.|..+|.+.+...|..|+.-+--+... |.+..--+++.- +=+.+.+.++|...-=++..++..+| +...-+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vi----k~~~s~~~~~Krl~Yl~~~~~~~~~~--e~~~l~ 108 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECL----KLIASQKFTDKRIGYLGAMLLLDERQ--DVHLLM 108 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHH----HHHHSSSHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHH----HHHcCCchHHHHHHHHHHHHHhCCCc--HHHHHH
Confidence 34555677777777777776555443332 223333334444 44456778887665445555444333 445567
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhh
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVC 407 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~ 407 (757)
++.|.+-|.|+++.||..|+.+++.+.... +.+.++..+...++|+++.||+.|+.+++++|+.+- +.+
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-------~~v- 177 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-------ELM- 177 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-------GGG-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-------HHH-
Confidence 999999999999999999999999987432 235668888889999999999999999999999631 111
Q ss_pred hhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHHH
Q 039884 408 DHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYY 487 (757)
Q Consensus 408 ~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~~~~~~~ 487 (757)
+ +|+|. +..+..+.|... +...+- ++. .+.+ -++...+.+..+ +...+..+
T Consensus 178 ~--~~~~~-l~~lL~D~d~~V-~~~Al~-~L~-~i~~-----------------~~~~~~~~~~~~------v~~l~~~L 228 (618)
T 1w63_A 178 E--MFLPA-TKNLLNEKNHGV-LHTSVV-LLT-EMCE-----------------RSPDMLAHFRKL------VPQLVRIL 228 (618)
T ss_dssp G--GGGGG-TTTSTTCCCHHH-HHHHHH-HHH-HHCC-----------------SHHHHHHHHHTT------HHHHHHHH
T ss_pred H--HHHHH-HHHHhCCCCHhH-HHHHHH-HHH-HHHH-----------------hChHHHHHHHHH------HHHHHHHH
Confidence 1 45552 333333443221 111111 111 1111 111111111110 11111111
Q ss_pred HHHHH-----h--hhCCCchHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHhccchhHHHHHHhhhchhhHHHHHHHHHH
Q 039884 488 LSVRK-----K--EKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDK 560 (757)
Q Consensus 488 l~~~~-----~--~~~~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f~~~~D~ri~~ll~~~~d~~t~~~a~~~~e~ 560 (757)
-++.. + +.+..++-.+.++.+.+.+++..- |... +.++.++..+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~------------~~~~~~L~~l~~~~----------- 283 (618)
T 1w63_A 229 KNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSS------------EAMNDILAQVATNT----------- 283 (618)
T ss_dssp HHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHH------------HTTHHHHHHHHHTS-----------
T ss_pred HHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHH------------HHHHHHHHHHHhcc-----------
Confidence 11111 1 111234555666666666555432 2111 11222222221000
Q ss_pred HHHHhcCCC----cHHHHHHHHHHhhh-hhcChhhHHHHHHhhhcCcccCchhhHHHHHHHHHHHhhCCcCCcccHHHHH
Q 039884 561 FLKLIGNKH----PEFEFLQLLTSKCL-YIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQ 635 (757)
Q Consensus 561 ~~K~~~~~~----~~~~~~k~Ll~r~s-~~~n~s~v~~ll~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~ 635 (757)
-..++ ..++.++.++.-.+ --.-...+..|...+.+ ++......|..-|..+...+|.+|..|...+.
T Consensus 284 ----~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~---~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~ 356 (618)
T 1w63_A 284 ----ETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLN---NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV 356 (618)
T ss_dssp ----CCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC---SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred ----ccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 00011 02233333222111 00000123444444442 22345567888888888888998888888888
Q ss_pred HHHhhccC-CchHHHHHHHhhCCccccCcCcHHHHHHHHHhcCCcHHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhc
Q 039884 636 KLLERNGL-INDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGA---SEQFVFMELCKGLVDS 711 (757)
Q Consensus 636 ~~l~d~~~-~~~~~l~~l~k~~~~~~~~~~~~~~~L~~~a~~Gtp~qAK~Av~~l~~~~~~---~~~~~~~~l~~~l~~~ 711 (757)
..+.|++. +...++..+.+.+.. .+...+...|..+..+.++.-...+++.|+.++.. ....++..+.+-+...
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~--~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNG--NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA 434 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCS--SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT
T ss_pred HHccCCChhHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhc
Confidence 88877653 445566666655543 12235677788888777776677778888766432 1223444444333221
Q ss_pred cCCCCCcchhHhHHHHHHhhChhhhhhhhhhHHHHHH
Q 039884 712 LHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIY 748 (757)
Q Consensus 712 l~~~~~l~t~L~sL~~ia~~~p~~fe~~~~~I~~fli 748 (757)
- +..-...+.++.+|.+..|+..+.-...+.+++-
T Consensus 435 ~--~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 435 G--SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAIL 469 (618)
T ss_dssp G--GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHH
T ss_pred c--chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHh
Confidence 1 1122236677777777777665544444444443
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.26 E-value=2.2e-05 Score=77.08 Aligned_cols=137 Identities=21% Similarity=0.175 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhH
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEV 303 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~V 303 (757)
.++..+...+.++.. ...+|.|..-|..++..+|..|+..+|++ +. +.....++....|.++.|
T Consensus 29 ~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~-~~---------~~~~~~L~~~l~d~~~~v 92 (201)
T 3ltj_A 29 YVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQI-GD---------ERAVEPLIKALKDEDGWV 92 (201)
T ss_dssp HHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC---------GGGHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh-CC---------HHHHHHHHHHHcCCCHHH
Confidence 334444445554432 24677777788889999999999999998 32 234556666778999999
Q ss_pred HHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHH
Q 039884 304 RLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKK 383 (757)
Q Consensus 304 R~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~ 383 (757)
|...++....+- .+ +.++.|.+.+.|+|+.||.+|+.++..+. +++.+..+.+.+.|..+.||..
T Consensus 93 r~~a~~aL~~~~--~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~ 157 (201)
T 3ltj_A 93 RQSAAVALGQIG--DE------RAVEPLIKALKDEDWFVRIAAAFALGEIG-------DERAVEPLIKALKDEDGWVRQS 157 (201)
T ss_dssp HHHHHHHHHHHC--CG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHT-------CGGGHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHhC--cH------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHHHHHcCCCHHHHHH
Confidence 999888876532 22 34567778889999999999999998775 2467778888899999999999
Q ss_pred HHHHHHHH
Q 039884 384 ALLKLLEV 391 (757)
Q Consensus 384 A~~~L~~l 391 (757)
|+..|+.+
T Consensus 158 A~~aL~~~ 165 (201)
T 3ltj_A 158 AADALGEI 165 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999987
No 21
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.20 E-value=0.0033 Score=73.18 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchh
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMT 405 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~ 405 (757)
...+.|...+.+.|..||..|+.+++.++...+..+.+ .+..+...+.|....||+.|++.|..+-+. .+
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~-~~~~i~~~l~d~d~~Ir~~alelL~~l~~~---------~n 382 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQR-HRSTIVDCLKDLDVSIKRRAMELSFALVNG---------NN 382 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGG-GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS---------SS
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHH-HHHHHHHHccCCChhHHHHHHHHHHHHccc---------cc
Confidence 35667777788888888888888888887665543322 334566667788888888888877766321 11
Q ss_pred hhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCC-CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhhHh
Q 039884 406 VCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSL----FTPLHLKALNCVLSQKKRF 480 (757)
Q Consensus 406 ~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~-~~~~~R~~~l~~l~~~----ld~~~~ka~~~i~~~k~~~ 480 (757)
++.|-..++....+.| .++|...+..+-. .-.-+ -.....+..++.+++. .......++..++.+...+
T Consensus 383 ----v~~iv~eL~~~l~~~d-~e~r~~~v~~I~~-la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l 456 (618)
T 1w63_A 383 ----IRGMMKELLYFLDSCE-PEFKADCASGIFL-AAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM 456 (618)
T ss_dssp ----THHHHHHHHHHHHHCC-HHHHHHHHHHHHH-HHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST
T ss_pred ----HHHHHHHHHHHHHhCC-HHHHHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH
Confidence 2223344444333333 3355555543321 11111 2233344555555532 2223345566666554444
Q ss_pred HH-HHHHHHHHHH
Q 039884 481 RS-EMRYYLSVRK 492 (757)
Q Consensus 481 ~~-~~~~~l~~~~ 492 (757)
+. ++..++++.+
T Consensus 457 ~~~~v~~L~~~l~ 469 (618)
T 1w63_A 457 HAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 43 4444444443
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.2e-05 Score=79.08 Aligned_cols=167 Identities=10% Similarity=0.150 Sum_probs=128.9
Q ss_pred HHHHHHH-HhhcCchhH------HhhHHhhhhhh-cCCChHHHHHHHHHHHHHhcCCC-Cchh-hhcHHHHHHHHhhccC
Q 039884 229 YHEIIFK-IFQCSPQML------LAVIPNLIQEL-LVDQVDVRIKAVNLIGKICAQPD-NCLA-DRYPELFVEFLKRFSD 298 (757)
Q Consensus 229 ~~eli~e-l~~~~P~lL------~~ViP~l~~eL-~sd~~~~R~~At~llG~mfs~~~-~~~~-~~~~~~w~~fL~R~~D 298 (757)
+.+-|.. +.+-+|.+. ..++..|...| ...|..+|..|.+.+|.|...-+ ..|. .-+..+...-+.|+.|
T Consensus 36 al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~d 115 (249)
T 2qk1_A 36 ALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKE 115 (249)
T ss_dssp HHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcC
Confidence 3334444 544455544 35666777777 56789999999999999975434 4676 6777889999999999
Q ss_pred CCHhHHHHHHHHhHHHHhcC-CCcch--HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC-------CCCHHHHHH
Q 039884 299 KSAEVRLNALRCAKACYLGG-PFRKE--SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK-------FVPEKLISE 368 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~-~~~~~--~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-------~v~~~ll~~ 368 (757)
+.+.||.....++..+..+. |.... -.++++.|..-|......||.+++..+..+....-. .+++.++..
T Consensus 116 kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~ 195 (249)
T 2qk1_A 116 KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPI 195 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 99999999888887777654 21111 336888888888888999999999999988865432 235788999
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 369 ATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 369 l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+..-+-|-++.||..|+..|+.+++..
T Consensus 196 l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 196 VIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999864
No 23
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.17 E-value=1.6e-05 Score=78.77 Aligned_cols=120 Identities=24% Similarity=0.254 Sum_probs=96.7
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE 326 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~e 326 (757)
.+|.|...|.+++..+|..|+..+|++ +. +.....++....|.++.||...++....+- .+ +
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~-~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~~------~ 81 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKI-GD---------ERAVEPLIKALKDEDAWVRRAAADALGQIG--DE------R 81 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH-CC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--CG------G
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-CC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--CH------H
Confidence 567777788899999999999999998 32 345566677778999999999888776542 11 3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 327 ILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 327 i~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
.++.|.+.|.|+|+.||..|+.++..+.. ++.+..+.+.+.|..+.||..|+..|+.+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45777788999999999999999987753 45677788888999999999999999886
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.13 E-value=0.00024 Score=77.77 Aligned_cols=324 Identities=12% Similarity=0.101 Sum_probs=179.6
Q ss_pred hcccCC-CchhHHHHHHHHHHHHhhhCCCCCCCchhHHH-----HHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhh-
Q 039884 42 GLLHQN-DKDIRLSVATCVSELFRILAPEPPFEDNYLRG-----VFELIISLFKELGNTGCPFFSKRVKILEIVARSKC- 114 (757)
Q Consensus 42 ~lL~hk-d~~Vr~~~acCl~dIlRi~APdaPy~d~~Lkd-----IF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks- 114 (757)
.+|++. |.+||..++-||..+..- +.+..+. +...++..+ .+++...-.+....|.+++....
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~lL---~~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIELL---SSEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHccCCHH
Confidence 366777 899999999999998752 2233332 333333333 33322222334555555554211
Q ss_pred -hhhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCC-------ChhHHHHHHHHhhccccCCcc
Q 039884 115 -FVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEET-------SLPLLEVVLWNLVKQEKDSPY 186 (757)
Q Consensus 115 -~vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~-------~~~lld~Il~~l~~~~~~~~~ 186 (757)
--.+.+ ...+..+....+ .+.+..+.......+..+..... ...++..++.-+-.. .+
T Consensus 141 ~~~~~~~-------~~~i~~L~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~----~~ 206 (450)
T 2jdq_A 141 CRDYVLD-------CNILPPLLQLFS---KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS----DT 206 (450)
T ss_dssp HHHHHHH-------TTCHHHHHHHTT---SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC----CH
T ss_pred HHHHHHH-------CCCHHHHHHHhc---CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC----CH
Confidence 000111 123344444443 33344566666666666653320 123555555333221 12
Q ss_pred hHHHHHHHHHhhchh----hhhHH----HHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhH-----HhhHHhhhh
Q 039884 187 AASQLAVSVIRNCAE----KLEPF----VCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQML-----LAVIPNLIQ 253 (757)
Q Consensus 187 ~a~~lA~~vi~~~~~----~l~~~----i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL-----~~ViP~l~~ 253 (757)
....-|...+.+.+. ..+.. +-..+...+.+ .+..+...+-..|..+....|+.. ..++|.|-.
T Consensus 207 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (450)
T 2jdq_A 207 DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH---NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283 (450)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC---CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH
Confidence 222222222222211 11100 01111122222 223455556666777766655432 258899999
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCCCCchhh--hcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhc-CCCcc---hHHHH
Q 039884 254 ELLVDQVDVRIKAVNLIGKICAQPDNCLAD--RYPELFVEFLKRFSDKSAEVRLNALRCAKACYLG-GPFRK---ESREI 327 (757)
Q Consensus 254 eL~sd~~~~R~~At~llG~mfs~~~~~~~~--~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~---~~~ei 327 (757)
-|.+++..+|..|...+|.+....+. ..+ .....+..++....|.++.||...+.....+... +|... ....+
T Consensus 284 ll~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 284 LLSSPKESIKKEACWTISNITAGNRA-QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 99999999999999999999653211 111 1124666777777788999999988888777654 23210 01246
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccC-------CCCH---H-----HHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHLK-------FVPE---K-----LISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-------~v~~---~-----ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
++.|...+.|.|.+||..++.++..+...... .+++ . .+..+.....+.+..||+.|+..|.++|
T Consensus 363 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 78888999999999999999999887743221 1111 1 1334445566677888888888888777
Q ss_pred H
Q 039884 393 R 393 (757)
Q Consensus 393 ~ 393 (757)
.
T Consensus 443 ~ 443 (450)
T 2jdq_A 443 G 443 (450)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.07 E-value=4.8e-05 Score=78.75 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=98.5
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh-hccCCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLK-RFSDKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~-R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
.++|.|..-|.+++..+|..|+..+|++-..+ . ..+.++..+.. -.+|.++.||...+.....+-..+|. ..
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~ 126 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-K----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--YS 126 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-T----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-c----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--cc
Confidence 36677777888899999999999999984322 1 12334333321 24788999999998888776544442 24
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
.++++.|...+.|+|+.||.+|+.++..+.. ++.+..+.+.+.|..+.||..|+..|+.+
T Consensus 127 ~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 127 PKIVEQSQITAFDKSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 4788999999999999999999999977643 34667777888999999999999999886
No 26
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.03 E-value=0.00013 Score=75.30 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhH
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEV 303 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~V 303 (757)
.++..+-..+..+....|..-..++|.|..-|.+++..+|..|+..+|++ +.+ ......+....|.++.|
T Consensus 106 ~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~-~~~---------~~~~~L~~~l~d~~~~v 175 (280)
T 1oyz_A 106 CVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI-NDK---------ATIPLLINLLKDPNGDV 175 (280)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc-CCH---------HHHHHHHHHHcCCCHHH
Confidence 34444555555655544544455677777777777888888888888876 322 12334444556777888
Q ss_pred HHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHH
Q 039884 304 RLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKK 383 (757)
Q Consensus 304 R~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~ 383 (757)
|...+.....+- +. ..++.+.|...+.|+|+.||..|+.++..+. ++..+..+.+.+.|.. ||..
T Consensus 176 r~~a~~aL~~~~---~~---~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~~~~L~~~l~d~~--vr~~ 240 (280)
T 1oyz_A 176 RNWAAFAININK---YD---NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRVLSVLCDELKKNT--VYDD 240 (280)
T ss_dssp HHHHHHHHHHHT---CC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGGHHHHHHHHTSSS--CCHH
T ss_pred HHHHHHHHHhhc---cC---cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhhHHHHHHHhcCcc--HHHH
Confidence 877766665431 11 2256677777778888888888888776664 3455666666666643 7777
Q ss_pred HHHHHHHH
Q 039884 384 ALLKLLEV 391 (757)
Q Consensus 384 A~~~L~~l 391 (757)
|+..|+++
T Consensus 241 a~~aL~~i 248 (280)
T 1oyz_A 241 IIEAAGEL 248 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777765
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.02 E-value=0.00056 Score=74.84 Aligned_cols=170 Identities=18% Similarity=0.125 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHHhhcCchhH-----HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhh--hcHHHHHHHHhhc
Q 039884 224 DLKEFYHEIIFKIFQCSPQML-----LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLAD--RYPELFVEFLKRF 296 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL-----~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~--~~~~~w~~fL~R~ 296 (757)
++...+-..+..+....|+.. ..++|.|-.-|.+++..+|..|...+|.+....+ ...+ .........+.-.
T Consensus 207 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 207 DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh-HHHHHHHHCccHHHHHHHH
Confidence 455566667777766555432 3588999999999999999999999999965432 1111 1124666777777
Q ss_pred cCCCHhHHHHHHHHhHHHHhcCCCcch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-ccC----CCCHHHHHH
Q 039884 297 SDKSAEVRLNALRCAKACYLGGPFRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARS-HLK----FVPEKLISE 368 (757)
Q Consensus 297 ~D~s~~VR~~~v~~~~~il~~~~~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~-~~~----~v~~~ll~~ 368 (757)
.|.++.||...+.....+...++.... ...+++.|...|.|.+.+||.+|+.+++.++.. ... .+...++..
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~ 365 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKP 365 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 888999999988888776543332100 125677888889999999999999999999753 221 234467888
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 369 ATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 369 l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+.+.+.++.+.||..|+..|+.+...
T Consensus 366 L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 366 LCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998774
No 28
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.97 E-value=3e-06 Score=78.40 Aligned_cols=120 Identities=15% Similarity=0.045 Sum_probs=88.9
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
..+|.+...|.+++..+|..|...+|++ +.+. ....+....|.++.||...+.....+- + .
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~-~~~~----------~~~L~~~L~d~~~~vR~~A~~aL~~~~----~----~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRM-GDEA----------FEPLLESLSNEDWRIRGAAAWIIGNFQ----D----E 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSC-SSTT----------HHHHHHGGGCSCHHHHHHHHHHHGGGC----S----H
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHh-CchH----------HHHHHHHHcCCCHHHHHHHHHHHHhcC----C----H
Confidence 3567777889999999999999999987 3221 245556677999999999877665432 1 2
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
+.++.|.+.|.|+|+.||.+|+.++..+. .++.+..+.+.++|..+.||..|+..|++|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIG-------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 45778888889999999999999998775 456788888889999999999999998753
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00029 Score=72.73 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=117.6
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHH-Hh-cCCCCch-hhhcHHHHHHHHhhc-cCCCHhHHHHHHHHhHHHHhc-C-CC-c
Q 039884 249 PNLIQELLVDQVDVRIKAVNLIGK-IC-AQPDNCL-ADRYPELFVEFLKRF-SDKSAEVRLNALRCAKACYLG-G-PF-R 321 (757)
Q Consensus 249 P~l~~eL~sd~~~~R~~At~llG~-mf-s~~~~~~-~~~~~~~w~~fL~R~-~D~s~~VR~~~v~~~~~il~~-~-~~-~ 321 (757)
|.+...+.+.+-..|..|..-++. ++ +.+...- ...|.+++....+.. +|.++.||....++...+... . +. .
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 456677889999999999999999 88 4333211 356789999999999 899999999888887776542 2 32 3
Q ss_pred -chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-cC-CC--CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 322 -KESREILAALESRLLDFDDRVRTEAVIVACDLARSH-LK-FV--PEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 322 -~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~-~~-~v--~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
.....++..+-+++.|....||.++..++..+.... .. .. .+.++..+.+-+..|++.||.+|+..|+.+...+
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 456789999999999999999999988887777543 11 11 4589999999999999999999999999999863
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.93 E-value=0.00017 Score=72.20 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHhhcCchhHH-----hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhcc
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLL-----AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFS 297 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~-----~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~ 297 (757)
++...+-..|..+....|+.-. +++|.|-.-|.+++..+|..|...++.+....+.. -.-.....+...+.-..
T Consensus 59 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~ 138 (252)
T 4hxt_A 59 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4445555556666554444322 47888888999999999999999999997432211 11111345667777777
Q ss_pred CCCHhHHHHHHHHhHHHHhcCCCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHH
Q 039884 298 DKSAEVRLNALRCAKACYLGGPFRK---ESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEAT 370 (757)
Q Consensus 298 D~s~~VR~~~v~~~~~il~~~~~~~---~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~ 370 (757)
|.++.+|...+.....+...++... ....+++.|...+.++|+.||..|+.+++.++..... .+....+..+.
T Consensus 139 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~ 218 (252)
T 4hxt_A 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ 218 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 8899999999888887665443210 0123678899999999999999999999999853321 23446788899
Q ss_pred HHhccCChhHHHHHHHHHHHHHHH
Q 039884 371 ERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 371 eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+.+++..+.||+.|+..|+++...
T Consensus 219 ~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 219 KLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCcHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999874
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.92 E-value=0.00076 Score=76.40 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=123.8
Q ss_pred chHHHHHHHHHHHhhcCchhHH-----hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhh--hcHHHHHHHHhhc
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLL-----AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLAD--RYPELFVEFLKRF 296 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~-----~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~--~~~~~w~~fL~R~ 296 (757)
++...+-..|..|....|+... .++|.|-.-|.+++..+|..|..++|.+....+. ..+ ........++.-.
T Consensus 272 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 272 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHH
Confidence 4555666777777766665433 6789999999999999999999999999654321 111 1123455566667
Q ss_pred cCCCHhHHHHHHHHhHHHHhcCCCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-c------CCCCHHHH
Q 039884 297 SDKSAEVRLNALRCAKACYLGGPFRK---ESREILAALESRLLDFDDRVRTEAVIVACDLARSH-L------KFVPEKLI 366 (757)
Q Consensus 297 ~D~s~~VR~~~v~~~~~il~~~~~~~---~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~-~------~~v~~~ll 366 (757)
.+.++.||...+.....+...++... ....+++.|...|.+.+..||.+|+.+++.++... . ..+...++
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCH
Confidence 77889999998888877654333210 01135677888888999999999999999987531 1 12233578
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 367 SEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 367 ~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
..+.+.+.+..+.||..|+..|+.+....
T Consensus 431 ~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 431 KPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999998754
No 32
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.90 E-value=0.00038 Score=68.13 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHH
Q 039884 187 AASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKA 266 (757)
Q Consensus 187 ~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~A 266 (757)
+|-.+-..++..-.+-.+|.+...|.-+- .+ ..-.+++..-.-+..+.++-|+++-+|+|-|-..+...|++.|..-
T Consensus 51 NAl~vi~~i~~~~~el~epl~~kL~vm~~--ks-EaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~ 127 (253)
T 2db0_A 51 NAISIIMVIAKTREDLYEPMLKKLFSLLK--KS-EAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINV 127 (253)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHH--HC-CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHh--hc-ccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecH
Confidence 45555566666666777777766663221 11 1123444444457788899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHH
Q 039884 267 VNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEA 346 (757)
Q Consensus 267 t~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aa 346 (757)
.-.+|++.-..+ .--+.+++.++.-..|++-.=|...+.+..++-.|++ +...--++.|...|+|-||-||..|
T Consensus 128 ~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~PfLprL~aLL~D~deiVRaSa 201 (253)
T 2db0_A 128 SYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPFLPRIINLLHDGDEIVRASA 201 (253)
T ss_dssp HHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGGHHHHHGGGGCSSHHHHHHH
T ss_pred HHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcchHHHHHHHcCcchhhhHHH
Confidence 999999854322 2335688899999999999999999999988877776 3333446788889999999999999
Q ss_pred HHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 347 VIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 347 V~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
|+++..+|..+++ + -.++..-.+++.|....|-+..-++|+++--
T Consensus 202 VEtL~~lA~~npk-l-Rkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 202 VEALVHLATLNDK-L-RKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHTSCHH-H-HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHH-H-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999976544 1 2344455588999999999999999988753
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.89 E-value=0.0083 Score=69.97 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhc--cCCCH
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRF--SDKSA 301 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~--~D~s~ 301 (757)
..++-.|--+..+.+..|+++.-++..+...|++.|+.+|-.|.+++|.+-. | .++ +.+-..-.+-. .|.++
T Consensus 89 ~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~--e~~---~~l~~~v~~~l~~~d~~~ 162 (621)
T 2vgl_A 89 TEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-R--EMA---EAFAGEIPKILVAGDTMD 162 (621)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-H--HHH---HHHTTHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-H--HHH---HHHHHHHHHHHhCCCCCH
Confidence 4455566666677788899888899999999999999999999999999832 2 233 23444444444 78888
Q ss_pred hHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q 039884 302 EVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSH 357 (757)
Q Consensus 302 ~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~ 357 (757)
.||...+-+...+....|+.-...+..+.+.+.|.|+|..|+.+|+.++++++..+
T Consensus 163 ~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 163 SVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 88888888888888777753222267888888888888888888888888887654
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.81 E-value=0.0051 Score=69.38 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=109.8
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccCC-CHhHHHHHHHHhHHHHhcCCCcc-
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSDK-SAEVRLNALRCAKACYLGGPFRK- 322 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~-s~~VR~~~v~~~~~il~~~~~~~- 322 (757)
.++|.|-.-|.+.+..+|..|..+||.+....+... .-........++.-..+. ++.||...+.....+...++...
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 578888889999999999999999999976432111 011233455555555677 89999998888777665333210
Q ss_pred --hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-ccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 323 --ESREILAALESRLLDFDDRVRTEAVIVACDLARS-HLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 323 --~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~-~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
....+++.|...|.+.|+.||.+|+.+++.++.. ... .+...++..+.+.+.++.+.||..|+..|+++.+..
T Consensus 366 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 366 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0113467788888899999999999999998865 221 223467888889999999999999999999998754
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.78 E-value=0.00032 Score=70.80 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=111.7
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch-
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE- 323 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~- 323 (757)
+++|.|-.-|.+++..+|..|+..+|.+...++.. -.-.....+...+.-..|.++.||...+.....+...++....
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 47888888899999999999999999996554322 1122334677777778888999999988888776654432110
Q ss_pred --HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 324 --SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 324 --~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
...+++.|...+.++|+.||..|+.+++.++..... .+....+..+.+.+++..+.||+.|...|+++.
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 123578889999999999999999999999743321 233457888899999999999999999998764
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.77 E-value=0.00017 Score=70.88 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=118.6
Q ss_pred chHHHHHHHHHHHhhcCchhH-----HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhcc
Q 039884 224 DLKEFYHEIIFKIFQCSPQML-----LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFS 297 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL-----~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~ 297 (757)
++...+-..|..+....|+.. ..++|.|-.-|.+++..+|..|...+|.+....+.. -.-.........+.-..
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 334444455555554444332 157888988999999999999999999996432211 00111234556666677
Q ss_pred CCCHhHHHHHHHHhHHHHhcCCCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHH
Q 039884 298 DKSAEVRLNALRCAKACYLGGPFRK---ESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEAT 370 (757)
Q Consensus 298 D~s~~VR~~~v~~~~~il~~~~~~~---~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~ 370 (757)
+.++.||...+.....+...++... .....++.|.+.+.++|++||..|+.++..+...... .+....+..+.
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 186 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 8889999998888777665444211 0124678899999999999999999999998754221 23346788888
Q ss_pred HHhccCChhHHHHHHHHHHHH
Q 039884 371 ERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 371 eR~rDKk~~VR~~A~~~L~~l 391 (757)
+.+.+....||+.|...|+++
T Consensus 187 ~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 187 QLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999999999886
No 37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.59 E-value=0.00063 Score=68.08 Aligned_cols=169 Identities=16% Similarity=0.109 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHhhcCchh----H-HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhccC
Q 039884 225 LKEFYHEIIFKIFQCSPQM----L-LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFSD 298 (757)
Q Consensus 225 l~~~~~eli~el~~~~P~l----L-~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~D 298 (757)
+...+-..|..+....|+. + .+++|.|-.-|.+++..+|..|+..+|.+....+.. -.-........++.-..|
T Consensus 18 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~ 97 (252)
T 4hxt_A 18 TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 97 (252)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC
Confidence 3334444555554444421 1 257888888999999999999999999996542110 001112345566666678
Q ss_pred CCHhHHHHHHHHhHHHHhcCCCcch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHH
Q 039884 299 KSAEVRLNALRCAKACYLGGPFRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVPEKLISEATE 371 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~~~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~e 371 (757)
.++.||...+.....+...++.... ....++.|.+.+.++|+.||..++.+++.++.... ..+....+..+.+
T Consensus 98 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 177 (252)
T 4hxt_A 98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 177 (252)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHH
Confidence 8999999988888776644442110 11357888899999999999999999999975332 1233467888999
Q ss_pred HhccCChhHHHHHHHHHHHHHH
Q 039884 372 RLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 372 R~rDKk~~VR~~A~~~L~~lY~ 393 (757)
.+.+..+.||..|+..|+++-.
T Consensus 178 ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 178 LLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999998754
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.50 E-value=0.00031 Score=68.99 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=109.9
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch--
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE-- 323 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-- 323 (757)
+.|.|..-|.++|..+|..|...++.+....+... .-.....+...++-..+.++.||...+.....+...++....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 56677778899999999999999999964432110 111124667777888888999999988888776544442100
Q ss_pred -HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 324 -SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 324 -~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
....++.|...|.++|+.||..|+.+++.++..... .+....+..+.+.+++....||..|+..|+++-.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 112568889999999999999999999999853321 2344678889999999999999999999998864
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.43 E-value=0.012 Score=66.53 Aligned_cols=169 Identities=12% Similarity=0.038 Sum_probs=122.7
Q ss_pred cchHHHHHHHHHHHhhcCchh-----HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCC--CCchhhhcHHHHHHHHhh
Q 039884 223 GDLKEFYHEIIFKIFQCSPQM-----LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQP--DNCLADRYPELFVEFLKR 295 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~l-----L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~--~~~~~~~~~~~w~~fL~R 295 (757)
.+++..+-..|..|....|+. -.+++|.|-.-|...+..+|..|+.+++.+.... ...+ .....++...+.-
T Consensus 187 ~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l 265 (530)
T 1wa5_B 187 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW-SVVSQALPTLAKL 265 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH-HHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHhHHHHHHHH
Confidence 355556666666666554431 2358888888888899999999999999998653 2222 2234567777777
Q ss_pred ccCCCHhHHHHHHHHhHHHHhcCCCcch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHH
Q 039884 296 FSDKSAEVRLNALRCAKACYLGGPFRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISE 368 (757)
Q Consensus 296 ~~D~s~~VR~~~v~~~~~il~~~~~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~ 368 (757)
..|.++.||...+.....+....+.... ...+++.|...|.|+++.||..|+.+++.++..... .+...++..
T Consensus 266 L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 345 (530)
T 1wa5_B 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPA 345 (530)
T ss_dssp TTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHH
Confidence 7888999999888877766544332100 114567888899999999999999999998753221 123367888
Q ss_pred HHHHhccCChhHHHHHHHHHHHHH
Q 039884 369 ATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 369 l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
+...+.+.++.||++|+..|+.+-
T Consensus 346 L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 346 LRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999874
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.40 E-value=0.017 Score=67.23 Aligned_cols=164 Identities=5% Similarity=-0.007 Sum_probs=116.2
Q ss_pred cchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHh
Q 039884 223 GDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAE 302 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~ 302 (757)
..++...-++++.+. .++-+..++..|...+...|.+.|..++..+|.+-..-+ .-+..|=++.-.+++-. ...
T Consensus 383 ~~Ir~~aL~lL~~l~--~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~-~~~~~~v~~Ll~ll~~~---~~~ 456 (621)
T 2vgl_A 383 VSVRQRAVDLLYAMC--DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA-VDYTWYVDTILNLIRIA---GDY 456 (621)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHH---GGG
T ss_pred HhHHHHHHHHHHHHc--ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhh---ccc
Confidence 357778889999985 556678889999999999999999999999999842211 11233334444444433 234
Q ss_pred HHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChh--HHHHHHHHHHHhhhhccC---CCCHHHHHHHHHHhccCC
Q 039884 303 VRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDR--VRTEAVIVACDLARSHLK---FVPEKLISEATERLRDKK 377 (757)
Q Consensus 303 VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~Dek--VR~aaV~~i~~l~~~~~~---~v~~~ll~~l~eR~rDKk 377 (757)
|..+.+.....++.++|+. ....+..|.+.+.|++-+ +=..++-.+++.+....+ ..|.++++.+..+..+-.
T Consensus 457 v~~ev~~~l~~ii~~~~~~--~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~ 534 (621)
T 2vgl_A 457 VSEEVWYRVIQIVINRDDV--QGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCS 534 (621)
T ss_dssp SCSHHHHHHHHHHGGGCSC--HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHhCChhH--HHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCC
Confidence 5566677778888888854 345677788888887643 222333667776643332 224589999999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 039884 378 ISIRKKALLKLLEVYRE 394 (757)
Q Consensus 378 ~~VR~~A~~~L~~lY~~ 394 (757)
..||..++..++++|..
T Consensus 535 ~~v~~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 535 VPTRALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 41
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0029 Score=65.75 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=109.0
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc--------hhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcC
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC--------LADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGG 318 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~--------~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 318 (757)
=+| +++.|.+-+=..|..|.+-+.++|..++.. ....++..|. ++..|..+.|-...+++...++...
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lk---k~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFA---QYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHH---HHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHh
Confidence 466 788999999999999999999999764211 1234455555 4557999999999888888776532
Q ss_pred C----C----cchHHHHHHHHHHh-hcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHH
Q 039884 319 P----F----RKESREILAALESR-LLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLL 389 (757)
Q Consensus 319 ~----~----~~~~~ei~~~L~~r-L~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~ 389 (757)
. . ......++..|.++ +-|+..++|..++.++..+.... .....++..+..=+..|++.||.+++..|+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~--~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD--TSITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS--SSSHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 2 1 12245677888877 89999999999999987776432 234667888888889999999999999999
Q ss_pred HHHHHH
Q 039884 390 EVYREY 395 (757)
Q Consensus 390 ~lY~~~ 395 (757)
++...+
T Consensus 165 ~~l~~f 170 (278)
T 4ffb_C 165 ELMAAF 170 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.35 E-value=0.00052 Score=69.25 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=109.6
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc-c-
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR-K- 322 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~- 322 (757)
.++|.|-.-|.+++..+|..|+..+|.+-...+.+- .-.........+.-..+.++.||...+.....+....+.. .
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 578888888999999999999999999965321110 0111235666777777888999999888887765433321 0
Q ss_pred -hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 323 -ESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 323 -~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
....+++.|.+.|.|.|+.||..|+.+++.++..... .+....+..+.+.+++..+.||..|+..|+.+-
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 1114678899999999999999999999999853321 223456788888999999999999999999985
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.33 E-value=0.11 Score=60.22 Aligned_cols=147 Identities=13% Similarity=0.011 Sum_probs=107.6
Q ss_pred HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch--hhhcHHHHHHHHhhccC-CCHhHHHHHHHHhHHHHhcCCC
Q 039884 244 LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL--ADRYPELFVEFLKRFSD-KSAEVRLNALRCAKACYLGGPF 320 (757)
Q Consensus 244 L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~--~~~~~~~w~~fL~R~~D-~s~~VR~~~v~~~~~il~~~~~ 320 (757)
=..++|.|..-|.+++..+|..|+..|+.+-.... +. ...++......++...+ .++++|...+.....+- .+++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~~ 89 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHRE 89 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cChh
Confidence 34578888888999999999999999999965543 22 12345667777777654 47999998877776432 2221
Q ss_pred cch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 321 RKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 321 ~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
... ....++.|.+.|.++|+.||..|+.++..++...-. .+....+..+.+.+++..+.+|..|+..|+.+-
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 100 113577888999999999999999999999865321 223567888889999999999998888887665
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.27 E-value=0.023 Score=64.49 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=106.7
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcc--
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRK-- 322 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 322 (757)
.++|.|-.-|.+++..++..|...+|.+.+..+..- .-........+..-..+.++.||...+.....+...++...
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 477888888999999999999999999976532110 00011122233334457789999988777777665444211
Q ss_pred -hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-c----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 323 -ESREILAALESRLLDFDDRVRTEAVIVACDLARSH-L----KFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 323 -~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~-~----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
....+++.|...|.+.+.+||.+|+.+++.++... . ..+....+..+.+.++.+.+.|+..++.+|.++.+.+
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 01136778888999999999999999999887532 1 1234456778888899999999999999999988643
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.27 E-value=0.018 Score=65.11 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=106.5
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh-hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch-
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA-DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE- 323 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~-~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~- 323 (757)
.++|.|-.-|.+++..+|..|...+|.+.+..+..-. -........+..-..+.++.||........++...++....
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 4788888889999999999999999999765421100 00011222233344577889999887777776554442110
Q ss_pred --HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-c----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 324 --SREILAALESRLLDFDDRVRTEAVIVACDLARSH-L----KFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 324 --~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~-~----~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
...+++.|...+.+.|.+||.+|+.+++.++... . ..+....+..+.+.++.+.+.|+..++.+|.++.+.+
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1136778888999999999999999999887532 1 1334566778888899999999999999999998753
No 46
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.21 E-value=0.0066 Score=63.27 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=111.8
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh-hccCCCHhHHHHHHHHhHHHHhc----CC--Ccc
Q 039884 250 NLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLK-RFSDKSAEVRLNALRCAKACYLG----GP--FRK 322 (757)
Q Consensus 250 ~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~-R~~D~s~~VR~~~v~~~~~il~~----~~--~~~ 322 (757)
.+...|-+.|-..|..|.+.+-+.+...+. -....=++.-.|+. |+.|.++.|=..+++....++.. ++ ...
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~-~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR-SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH-HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 445578888999999999999998875332 23344455666887 99999999999999888877632 12 223
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCH-HHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 323 ESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPE-KLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 323 ~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~-~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
++..++++|-+|+-|+.|+||-++-..+..+.. ..|+ .++..+.+-++.|++.+|.+++..++.+...+
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~----v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD----VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999888766653 2344 58999999999999999999999999999886
No 47
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.11 E-value=0.053 Score=60.96 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHHHhhcCch---hHH--hhHHhhhhhh-cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhc
Q 039884 223 GDLKEFYHEIIFKIFQCSPQ---MLL--AVIPNLIQEL-LVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRF 296 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~---lL~--~ViP~l~~eL-~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~ 296 (757)
.++.+.+-..|..|....|. .+. +++|.|-.-| .+.+..+|..|+.+++.+....+..-...........+.-.
T Consensus 174 ~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL 253 (528)
T 4b8j_A 174 DDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 253 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 35666677777777765554 222 4788888888 67789999999999999987633222333456777778888
Q ss_pred cCCCHhHHHHHHHHhHHHHhcCCCcc-h--HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHH
Q 039884 297 SDKSAEVRLNALRCAKACYLGGPFRK-E--SREILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVPEKLISEA 369 (757)
Q Consensus 297 ~D~s~~VR~~~v~~~~~il~~~~~~~-~--~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l 369 (757)
.+.++.||...+.....+....+... . ...+++.|...|.++++.||..|+.+++.++.... ..+...++..+
T Consensus 254 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCL 333 (528)
T ss_dssp TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHH
Confidence 89999999998887776553322110 0 11356789999999999999999999999885332 12345677888
Q ss_pred HHHhccC-ChhHHHHHHHHHHHHH
Q 039884 370 TERLRDK-KISIRKKALLKLLEVY 392 (757)
Q Consensus 370 ~eR~rDK-k~~VR~~A~~~L~~lY 392 (757)
...+.+. ++.||++|...|+++-
T Consensus 334 ~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 334 LSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 8888888 9999999999999874
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.81 E-value=0.0047 Score=65.45 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=108.8
Q ss_pred hhHHhhhh-hhcCCChHHHHHHHHHHHHHhcCCCC--c-hh--hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC
Q 039884 246 AVIPNLIQ-ELLVDQVDVRIKAVNLIGKICAQPDN--C-LA--DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP 319 (757)
Q Consensus 246 ~ViP~l~~-eL~sd~~~~R~~At~llG~mfs~~~~--~-~~--~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 319 (757)
+.+|.|-. -|.+++..+|..|...||.+-+..+. . +. ...|.+++-+ + .|.++.||...+.....+..+++
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL-~--~~~~~~v~~~A~~ALsnl~~~~~ 157 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL-D--RDACDTVRVKALFAISCLVREQE 157 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-H--HCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH-c--cCCCHHHHHHHHHHHHHHHcCCc
Confidence 45666666 78899999999999999999764321 1 11 2345555433 2 25678999998888887776665
Q ss_pred Ccch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 320 FRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 320 ~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
.... ....++.|...|.+.|.+||..|+.+++.++..... .+....+..+.+.++.+...||..|+.+|+.+-
T Consensus 158 ~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 3110 113577888889999999999999999998865432 345678888999999999999999999999987
Q ss_pred HH
Q 039884 393 RE 394 (757)
Q Consensus 393 ~~ 394 (757)
..
T Consensus 238 ~~ 239 (296)
T 1xqr_A 238 TD 239 (296)
T ss_dssp TT
T ss_pred hC
Confidence 54
No 49
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.80 E-value=0.0032 Score=57.66 Aligned_cols=87 Identities=22% Similarity=0.161 Sum_probs=69.2
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHH
Q 039884 248 IPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREI 327 (757)
Q Consensus 248 iP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei 327 (757)
+|.|..-|..++..+|..|+..+|++ +. +......+....|.++.||...+.....+- ..+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~-~~---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a 105 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNF-QD---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERV 105 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGG-CS---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc-CC---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHH
Confidence 47777788899999999999999998 32 344555566667999999999988877542 1256
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHH
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACD 352 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~ 352 (757)
++.|.+.+.|+|..||.+|+.++..
T Consensus 106 ~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 106 RAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7888889999999999999998854
No 50
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.77 E-value=0.063 Score=55.87 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=124.6
Q ss_pred HHHHHHHhhcCchhHHhh----HHhhhhhhcCCChHHHHHHHHHHHHHhc---CCCCchhhh-cHHHHHHHHhhccCCCH
Q 039884 230 HEIIFKIFQCSPQMLLAV----IPNLIQELLVDQVDVRIKAVNLIGKICA---QPDNCLADR-YPELFVEFLKRFSDKSA 301 (757)
Q Consensus 230 ~eli~el~~~~P~lL~~V----iP~l~~eL~sd~~~~R~~At~llG~mfs---~~~~~~~~~-~~~~w~~fL~R~~D~s~ 301 (757)
-+.|.+.-...|+.+..+ ++.+...+...|..+=..+.+++..+|. ..+..+... -..+--..+.|.-|...
T Consensus 67 le~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~ 146 (266)
T 2of3_A 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKD 146 (266)
T ss_dssp HHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSH
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChH
Confidence 344444444466555444 3444444557788888888888777764 223333322 13455577999999999
Q ss_pred hHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hccCCCCHHHH---HHHHHHhccCC
Q 039884 302 EVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR-SHLKFVPEKLI---SEATERLRDKK 377 (757)
Q Consensus 302 ~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~~~~~v~~~ll---~~l~eR~rDKk 377 (757)
.||-..-+....+..-.| ...+.+.+.+.+..-..++|.+.+..+..+-. +... +...+ ..++.-+-|+.
T Consensus 147 ~vR~~~r~il~~l~~v~~----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d 220 (266)
T 2of3_A 147 NMRTSVRDIVNVLSDVVG----PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKD 220 (266)
T ss_dssp HHHHHHHHHHHHHHHHHC----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSS
T ss_pred HHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCC
Confidence 999998666655443333 33577888888888899999999999877753 3333 55677 99999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHh
Q 039884 378 ISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILM 419 (757)
Q Consensus 378 ~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~ 419 (757)
..||..|++++..+|+.. | +.++..++.+|.+...
T Consensus 221 ~~VR~aAl~~lve~y~~~------G-d~v~k~lg~L~~~~~~ 255 (266)
T 2of3_A 221 VNVRNAAINVLVACFKFE------G-DQMWKAAGRMADKDKS 255 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH------T-THHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------h-HHHHHHHhcCCHHHHH
Confidence 999999999999999974 4 3467777778877654
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.72 E-value=0.13 Score=57.18 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHhhcCch-------hH-HhhHHhhhhhhcCCC-hHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh
Q 039884 224 DLKEFYHEIIFKIFQCSPQ-------ML-LAVIPNLIQELLVDQ-VDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLK 294 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~-------lL-~~ViP~l~~eL~sd~-~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~ 294 (757)
++...+-..|..|....|+ ++ ..++|.|..-|.+++ ..+|..|..+++.+...+...-.-.........+.
T Consensus 325 ~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ 404 (529)
T 1jdh_A 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404 (529)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHH
Confidence 3334444455555444443 12 257899999999887 59999999999999764321100001122333334
Q ss_pred hccCCCHhHHHHHH----------------------HHhHHHHhcCCCcc---hHHHHHHHHHHhhcCCChhHHHHHHHH
Q 039884 295 RFSDKSAEVRLNAL----------------------RCAKACYLGGPFRK---ESREILAALESRLLDFDDRVRTEAVIV 349 (757)
Q Consensus 295 R~~D~s~~VR~~~v----------------------~~~~~il~~~~~~~---~~~ei~~~L~~rL~D~DekVR~aaV~~ 349 (757)
-..|.++.||.+.. ..... +..+++.. ....+++.|...+.|+++.||..|+.+
T Consensus 405 ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~-L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~ 483 (529)
T 1jdh_A 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI-LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483 (529)
T ss_dssp HHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHH-HTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHH-HhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHH
Confidence 44455566665322 11111 11122100 011235788889999999999999999
Q ss_pred HHHhhhhcc---CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 350 ACDLARSHL---KFVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 350 i~~l~~~~~---~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
++.++.... .......+..+.+.+.+.++.||+.|...|.++
T Consensus 484 l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 484 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 988763211 112234566677788999999999999988765
No 52
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.67 E-value=0.065 Score=64.93 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhcCc-hhHHhhHHhhhhhh----cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCC
Q 039884 226 KEFYHEIIFKIFQCSP-QMLLAVIPNLIQEL----LVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKS 300 (757)
Q Consensus 226 ~~~~~eli~el~~~~P-~lL~~ViP~l~~eL----~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s 300 (757)
+....+++..+....| +++..+++.+...| .+.+-..|-.|.-.+|.+-..........-+.+.. .+-...+-+
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~-~l~~l~~~~ 502 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH-HGGGSCCCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH-HHHhCCCCc
Confidence 3446678888887776 56667888888888 66788889999999999865432221122245555 455666668
Q ss_pred HhHHHHHHHHhHHH---HhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC-CCC--HHHHHHHHHHhc
Q 039884 301 AEVRLNALRCAKAC---YLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK-FVP--EKLISEATERLR 374 (757)
Q Consensus 301 ~~VR~~~v~~~~~i---l~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-~v~--~~ll~~l~eR~r 374 (757)
+.||...+.....+ +..|| ..-..+++.|...+.| ++||..|+.++..+....-+ .+| +.++..+..-+.
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 89998766655543 23344 2344667788888876 79999999999888753222 222 577777766554
Q ss_pred c--CChhHHHHHHHHHHHHHH
Q 039884 375 D--KKISIRKKALLKLLEVYR 393 (757)
Q Consensus 375 D--Kk~~VR~~A~~~L~~lY~ 393 (757)
. =+..+|..+++++|.+-.
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCChHHHHHHHHHHHHHHh
Confidence 2 356889999999888864
No 53
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.46 E-value=0.03 Score=60.80 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=103.5
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCC
Q 039884 221 VEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKS 300 (757)
Q Consensus 221 ~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s 300 (757)
.+-.+++-.|--+.++++..++++ =|+..|...+++.|+-+|-.|.+++|++-.. .++ +++....-.-..|++
T Consensus 80 ~d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~---~~l~~~lk~~L~d~~ 152 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TML---QAIERYMKQAIVDKV 152 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTH---HHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHH---HHHHHHHHHHcCCCC
Confidence 344566767777778888855555 7999999999999999999999999999543 233 478888888899999
Q ss_pred HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 039884 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~ 355 (757)
|.||...+=++.+++..+|+ .....++.+.+.+.|.+.-|=..|+.++.++..
T Consensus 153 pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 153 PSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 99999998888888877774 445678889999999999999999999888765
No 54
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.087 Score=54.46 Aligned_cols=148 Identities=9% Similarity=0.049 Sum_probs=106.1
Q ss_pred HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-----hhhh-cHHHHHHHHhh-ccCCCHhHHHHHHHHhHHHHh
Q 039884 244 LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-----LADR-YPELFVEFLKR-FSDKSAEVRLNALRCAKACYL 316 (757)
Q Consensus 244 L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-----~~~~-~~~~w~~fL~R-~~D~s~~VR~~~v~~~~~il~ 316 (757)
+....|.+..-+...|..+-..|.+++..++..-+.. +... -..+....+.| +.|..+.+|...++++..+..
T Consensus 53 ~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 53 YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 3345566666777789999999999999887532211 1111 22334445556 789999999988888876664
Q ss_pred cCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hccCCCCH-----HHHHHHHHHhccCChhHHHHHHHHHHH
Q 039884 317 GGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR-SHLKFVPE-----KLISEATERLRDKKISIRKKALLKLLE 390 (757)
Q Consensus 317 ~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~~~~~v~~-----~ll~~l~eR~rDKk~~VR~~A~~~L~~ 390 (757)
.... ...+.+.+..-+..-..+||.+++..+..+.. +....++. .+++.+..-+-|.++.||..|+..++.
T Consensus 133 ~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 133 LDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp TSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3222 22566777788888899999999999988763 45566653 355567777899999999999999999
Q ss_pred HHHH
Q 039884 391 VYRE 394 (757)
Q Consensus 391 lY~~ 394 (757)
+|+.
T Consensus 210 ly~~ 213 (278)
T 4ffb_C 210 IYKV 213 (278)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 9983
No 55
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.29 E-value=0.08 Score=54.82 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=107.1
Q ss_pred HHHHHHhhccCCCHhHHHHHHHHhHHHHhc-CCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHH
Q 039884 288 LFVEFLKRFSDKSAEVRLNALRCAKACYLG-GPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLI 366 (757)
Q Consensus 288 ~w~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll 366 (757)
--.+||+..+-.+.+.++..+..+..++++ +| ..-.++++.+-.-..|++-.||.-.+.-+.++...+.. .-..++
T Consensus 16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp--~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~l 92 (257)
T 3gs3_A 16 KVVDWCNELVIASPSTKCELLAKVQETVLGSCA--ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHVI 92 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH--hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344666766666668999999999997765 45 45779999999999999999999999999888766654 345677
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcC------chhhhhhhhchhHHHHhhhc
Q 039884 367 SEATERLRDKKISIRKKALLKLLEVYREYCKKCCEG------QMTVCDHFEQIPCKILMLCY 422 (757)
Q Consensus 367 ~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~------~~~~~~~~~wIP~~il~~~y 422 (757)
.++...++|..+.|-|.||.+.+.+|+..+.....+ .+..|+.+..+.+.|++.+.
T Consensus 93 ~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~ 154 (257)
T 3gs3_A 93 NVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMID 154 (257)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 788888899999999999999999999887755433 25789999999999998753
No 56
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.57 Score=46.07 Aligned_cols=190 Identities=15% Similarity=0.166 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHhhcCCC--hhHHHHHHHHhhccccCCcchHHHHHHH---HHhhchhhhhHHHHHHhhhhccCCCccc
Q 039884 148 SLTNHMLSTMTHIINEETS--LPLLEVVLWNLVKQEKDSPYAASQLAVS---VIRNCAEKLEPFVCGFLTSCFLDRDAVE 222 (757)
Q Consensus 148 ~v~~~m~~Il~~vI~E~~~--~~lld~Il~~l~~~~~~~~~~a~~lA~~---vi~~~~~~l~~~i~~~~~~~~~~~~~~~ 222 (757)
.|...-+.+++.++.|... .|+++-++.-+-+...- |.-..+|+. +..-..+.+.+-|-..|.+--.+ .
T Consensus 47 tV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaI--pltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrig----d 120 (253)
T 2db0_A 47 TVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAI--PLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG----D 120 (253)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC----S
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccC--chHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcC----C
Confidence 4566677788888887533 56888877554432221 221233332 22333444555444445443221 2
Q ss_pred cchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh----ccC
Q 039884 223 GDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKR----FSD 298 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R----~~D 298 (757)
...+-.....+.|+.+..|+++.+|.-.+-.-|.+.|..-|+.|...+|-| |.. ++.+-.-||-| ..|
T Consensus 121 ~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~al-Gen-------~~~yv~PfLprL~aLL~D 192 (253)
T 2db0_A 121 EKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM-GEN-------SFKYVNPFLPRIINLLHD 192 (253)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC-CTT-------THHHHGGGHHHHHGGGGC
T ss_pred ccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-hcc-------CccccCcchHHHHHHHcC
Confidence 244456777999999999999999999999999999999999999999987 432 33344444444 589
Q ss_pred CCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 039884 299 KSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLA 354 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~ 354 (757)
.+.-||...|+...++-..||- -.-++..--+++.|+.+-|-..++.++..+.
T Consensus 193 ~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 193 GDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999888884 3345566667899999999999999998775
No 57
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.08 E-value=0.77 Score=54.95 Aligned_cols=147 Identities=10% Similarity=0.023 Sum_probs=104.0
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC--chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN--CLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE 323 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~--~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 323 (757)
..+|.|..-|.++++.+|..|++++|.|.+.++. .+. ........++.=....+..||.+...+...+-..++. .
T Consensus 623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v-~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~--~ 699 (810)
T 3now_A 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE-GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK--C 699 (810)
T ss_dssp THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH-SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH--H
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH-hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH--H
Confidence 5799999999999999999999999999875431 111 1123444554444556788998776555544432332 1
Q ss_pred HH------HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhcc---CChhHHHHHHHHHHH
Q 039884 324 SR------EILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRD---KKISIRKKALLKLLE 390 (757)
Q Consensus 324 ~~------ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rD---Kk~~VR~~A~~~L~~ 390 (757)
.+ ..++.|..-|.+.|++||..|+.+++.+....- ..+....+..+.+..++ |+..|++.|.++|..
T Consensus 700 ~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 700 CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 22 345688889999999999999999999875332 23445666666666654 589999999999999
Q ss_pred HHHHH
Q 039884 391 VYREY 395 (757)
Q Consensus 391 lY~~~ 395 (757)
+-...
T Consensus 780 ll~~g 784 (810)
T 3now_A 780 AERYR 784 (810)
T ss_dssp HHHHH
T ss_pred HHhCC
Confidence 97654
No 58
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.94 E-value=0.038 Score=60.51 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=105.6
Q ss_pred HHHHHHhhccCCCHhHHHHHHHHhHHHHh-cCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHH
Q 039884 288 LFVEFLKRFSDKSAEVRLNALRCAKACYL-GGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLI 366 (757)
Q Consensus 288 ~w~~fL~R~~D~s~~VR~~~v~~~~~il~-~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll 366 (757)
---+||+..+..+.+.++..+..+..++. .+|+ .-.++++.+..--.|++-.||.-.+..+.+....+...+ ..++
T Consensus 26 ~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps--Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-~~~l 102 (386)
T 3o2t_A 26 RVVDLLNQAALITNDSKITVLKQVQELIINKDPT--LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-LKLI 102 (386)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG--GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34566766666556789999999999766 4564 455889999999999999999999999988887776665 7888
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCc------hhhhhhhhchhHHHHhhh
Q 039884 367 SEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQ------MTVCDHFEQIPCKILMLC 421 (757)
Q Consensus 367 ~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~------~~~~~~~~wIP~~il~~~ 421 (757)
.++...++|..+.|-|.+|.+.+.+|+..+.-...++ +..|+.+..|.+.|++.+
T Consensus 103 ~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ 163 (386)
T 3o2t_A 103 ANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLL 163 (386)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999997766332222 467888889999999865
No 59
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.72 E-value=2.9 Score=50.03 Aligned_cols=166 Identities=10% Similarity=0.097 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHhh-cCchh------HHhhHHhhhhhhcCC-ChHHHHHHHHHHHHHhcCCCC---chhhhcHHHHHHHH
Q 039884 225 LKEFYHEIIFKIFQ-CSPQM------LLAVIPNLIQELLVD-QVDVRIKAVNLIGKICAQPDN---CLADRYPELFVEFL 293 (757)
Q Consensus 225 l~~~~~eli~el~~-~~P~l------L~~ViP~l~~eL~sd-~~~~R~~At~llG~mfs~~~~---~~~~~~~~~w~~fL 293 (757)
.++.+-.-|..|.. ..|+. ...++|.|-.-|.++ +...+..|...|+.+.+.++. .+++ ...|....
T Consensus 552 ~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv 629 (810)
T 3now_A 552 GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK--EQGVSKIE 629 (810)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHH
Confidence 34444445555443 34544 245889999888876 445567899999999876531 1122 13466666
Q ss_pred hhccCCCHhHHHHHHHHhHHHHhcCCCcc-h---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCC-HH
Q 039884 294 KRFSDKSAEVRLNALRCAKACYLGGPFRK-E---SREILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVP-EK 364 (757)
Q Consensus 294 ~R~~D~s~~VR~~~v~~~~~il~~~~~~~-~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~-~~ 364 (757)
.=..+.++.||....+...++.. +++.. . ....++.|-..+...|+.||.+|+.++..++.... ..+. ..
T Consensus 630 ~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g 708 (810)
T 3now_A 630 YYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS 708 (810)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 55567789999998888877654 33210 0 01345677777888899999999999998876322 1334 57
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 365 LISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 365 ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
.+..+.+.++.....||+.|...|+++-.
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 78888899999999999999999998754
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.65 E-value=0.041 Score=61.28 Aligned_cols=150 Identities=13% Similarity=0.021 Sum_probs=104.7
Q ss_pred chhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhcc-CCCHhHHHHHHHHhHHHHhcC
Q 039884 241 PQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFS-DKSAEVRLNALRCAKACYLGG 318 (757)
Q Consensus 241 P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~-D~s~~VR~~~v~~~~~il~~~ 318 (757)
|.+-...+|.|..-|.++++.+|..|+..++.+-..++.. ..-..+......++... +.++.+|...+.....+- .+
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls-~~ 90 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HH 90 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TS
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cC
Confidence 3444567888888899999999999999999996543210 11234456666665554 347899988877777643 22
Q ss_pred CCcch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 319 PFRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 319 ~~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
++... ....++.|.+.|.++|+.||..|+.++..++..... .+....+..+.+.+++..+.||..+...|+.+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 21100 113567888999999999999999999999765322 22456788888999999999999988888755
No 61
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.45 E-value=0.18 Score=54.59 Aligned_cols=215 Identities=14% Similarity=0.109 Sum_probs=123.5
Q ss_pred ChhHHHHHHHHhhccccCCcchHHHHH-HHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhH
Q 039884 166 SLPLLEVVLWNLVKQEKDSPYAASQLA-VSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQML 244 (757)
Q Consensus 166 ~~~lld~Il~~l~~~~~~~~~~a~~lA-~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL 244 (757)
+.+++ .+.+.|.+.-.+.+|--+.+| +.+++=....+-+++..++..++.+.++ -+++.+---++.|+..+|+++
T Consensus 99 ~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~p---yVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 99 AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVP---SVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSH---HHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHhccCHHHH
Confidence 44444 445555544444455555666 4466667777888888888888877654 456666666889999999999
Q ss_pred HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhcc---CCCHhHHHHHHHHhHHHHhcC-CC
Q 039884 245 LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFS---DKSAEVRLNALRCAKACYLGG-PF 320 (757)
Q Consensus 245 ~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~---D~s~~VR~~~v~~~~~il~~~-~~ 320 (757)
...++.+.+-+...|.-+=..|+.++..+-... +......+..++ -.++-.-+.+++.+..+...+ |
T Consensus 175 ~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~- 245 (355)
T 3tjz_B 175 KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG- 245 (355)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch-
Confidence 999999988888889888889999998885332 112222222222 224444455555554433333 2
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 321 RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 321 ~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
....++.+.|..+|.-..+-|-.+||++|+.+........ ......+.--+..+++.||=.|+..|.++=..+
T Consensus 246 -~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 246 -SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred -hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 3456899999999999999999999999988754211111 011122222345677889999988888876653
No 62
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.44 E-value=0.96 Score=54.81 Aligned_cols=164 Identities=10% Similarity=0.092 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHhhcCc-hhHHhhHHhhhhhhcC-----CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhcc-
Q 039884 225 LKEFYHEIIFKIFQCSP-QMLLAVIPNLIQELLV-----DQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFS- 297 (757)
Q Consensus 225 l~~~~~eli~el~~~~P-~lL~~ViP~l~~eL~s-----d~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~- 297 (757)
.++...+++..+....| +++..+++.+...|.+ .+-..|-.|+-.+|.+-..........=+.++. .+..+.
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~ 515 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCc
Confidence 44567788999999888 6777899999988876 677889999999999843322111222355666 444444
Q ss_pred -CCCHhHHHHHHHHhHHHH---hcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC---CHHHHHHHH
Q 039884 298 -DKSAEVRLNALRCAKACY---LGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV---PEKLISEAT 370 (757)
Q Consensus 298 -D~s~~VR~~~v~~~~~il---~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v---~~~ll~~l~ 370 (757)
|..+.||...+.....+- ..+| .....+++.|...+ | .+|+.+|+.++..+....-..+ -+.++..+.
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~ 590 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACH 590 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 789999998776655433 3345 34567888888888 5 8899999999988874321111 135666665
Q ss_pred HHhcc--CChhHHHHHHHHHHHHHHH
Q 039884 371 ERLRD--KKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 371 eR~rD--Kk~~VR~~A~~~L~~lY~~ 394 (757)
+-+.. =+..+|..+++++|.+...
T Consensus 591 ~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 591 ASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 55554 2478999999999999863
No 63
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.39 E-value=0.67 Score=56.12 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=110.5
Q ss_pred HHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhc-cCCCHhHHHHHHHHhHH
Q 039884 235 KIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRF-SDKSAEVRLNALRCAKA 313 (757)
Q Consensus 235 el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~-~D~s~~VR~~~v~~~~~ 313 (757)
-+.-..|+..-.++-.|.. .++..+|..|+-.+|-.++..|.. ...+..|... .|.+..||...|-...-
T Consensus 534 ll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGl 604 (963)
T 4ady_A 534 LINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGF 604 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHh
Confidence 3344445444443333332 578999999999999888776653 3344444442 47888999988887776
Q ss_pred HHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 314 CYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 314 il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
|...+|+ . +.+.+...+.+.|..||..|..++.-+...+. .++++..|.....|....||+.|+..||.+-.
T Consensus 605 I~~g~~e--~---v~rlv~~L~~~~d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 605 VLLRDYT--T---VPRIVQLLSKSHNAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HTSSSCS--S---HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred hccCCHH--H---HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 6666652 2 33333445668999999999999976654332 46888888888999999999999999998865
Q ss_pred HHHHhhhcCchhhhhhhhchhHHHHhhhcccc
Q 039884 394 EYCKKCCEGQMTVCDHFEQIPCKILMLCYDKD 425 (757)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d 425 (757)
.. +.+....+..+-..+...|++++
T Consensus 677 gt-------nna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 677 QQ-------TEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp TC-------CTTTCTTHHHHHHHHHHHHHCSS
T ss_pred CC-------ccccchHHHHHHHHHHHHHhccc
Confidence 31 12222344555555555555433
No 64
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.02 E-value=2.8 Score=49.84 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=95.6
Q ss_pred hHHhhhhhhcCCChH-HHHHHHHHHHHHhcCCCCchhh-hcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 247 VIPNLIQELLVDQVD-VRIKAVNLIGKICAQPDNCLAD-RYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 247 ViP~l~~eL~sd~~~-~R~~At~llG~mfs~~~~~~~~-~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
.+|.|-.-|...+.. .+..|..+++.+-..+. +... .........+.-..+.++.+|..++.....+....+.....
T Consensus 319 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 397 (780)
T 2z6g_A 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM 397 (780)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCC
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhh
Confidence 455555556655544 44566777777644322 1110 11124456677777888899988887777766554432234
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhccC-C-hhHHHHHHHHHHHHH
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRDK-K-ISIRKKALLKLLEVY 392 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rDK-k-~~VR~~A~~~L~~lY 392 (757)
..+++.|...|.+.|+.||..|+.+++.++.... ..+....+..+.+.+.+. . ..||..|+..|++|-
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999875432 112234566666666653 2 389999999999883
No 65
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.96 E-value=0.25 Score=55.74 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHHhhcCchhH-----HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC--chhhhc--HHHHHHHHh
Q 039884 224 DLKEFYHEIIFKIFQCSPQML-----LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN--CLADRY--PELFVEFLK 294 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL-----~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~--~~~~~~--~~~w~~fL~ 294 (757)
++...+-..|..|....|+-- .+++|.|-.-|.+++..+|..|+..||.+-+..+. ...... -+..-.+|.
T Consensus 116 ~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 343344445555555555432 24799999999999999999999999999664321 111111 223334443
Q ss_pred hccC--CCHhHHHHHHHHhHHHHhcC-CC--cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHH
Q 039884 295 RFSD--KSAEVRLNALRCAKACYLGG-PF--RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKL 365 (757)
Q Consensus 295 R~~D--~s~~VR~~~v~~~~~il~~~-~~--~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~l 365 (757)
.... ....+...++.....+..+. +. ......+++.|.+.+.+.|+.||..|+.+++.++...-. .+...+
T Consensus 196 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 275 (510)
T 3ul1_B 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275 (510)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred hccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhccc
Confidence 3211 11222222222333322221 21 222457889999999999999999999999988753321 234456
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 366 ISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 366 l~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
+..+.+.+++.+..||..|+..|+++.
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhh
Confidence 777888889999999999999998874
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.93 E-value=0.99 Score=52.16 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=102.3
Q ss_pred hhHHhhhhhhcCC-ChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 246 AVIPNLIQELLVD-QVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 246 ~ViP~l~~eL~sd-~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
..+|.|-.-|.+. .+..|..|...++.+-..+...-.-.....+...+.-..+.++.+|..++.....+-...+.....
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 261 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM 261 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSC
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhh
Confidence 3566666666654 467778888898888544321111111236777788888889999998888877766554443334
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccC--ChhHHHHHHHHHHHHH
Q 039884 325 REILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDK--KISIRKKALLKLLEVY 392 (757)
Q Consensus 325 ~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDK--k~~VR~~A~~~L~~lY 392 (757)
..+++.|.+.+.+.|+.||..|+.+++.+...... .+....+..+.+.+.+. +..||..|+..|+++-
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999988754321 12223566666666653 3799999999999983
No 67
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.87 E-value=0.15 Score=60.89 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=107.7
Q ss_pred hhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC-chhhhcHHHHHHHHhhcc-CCCHhHHHHHHHHhHHHHhcCC
Q 039884 242 QMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN-CLADRYPELFVEFLKRFS-DKSAEVRLNALRCAKACYLGGP 319 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~-~~~~~~~~~w~~fL~R~~-D~s~~VR~~~v~~~~~il~~~~ 319 (757)
.+....+|.|..-|.+++..+|..|+..|+.+-...+. ......+......+.... +.++.+|...+.....+- .++
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls-~~~ 224 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHR 224 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TSH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCc
Confidence 45577899999999999999999999999998654211 111224556666555554 348999999888887733 232
Q ss_pred Ccc--h-HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 039884 320 FRK--E-SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEV 391 (757)
Q Consensus 320 ~~~--~-~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~l 391 (757)
+.. . ....++.|.+.|.+.++.||..|+.++..++...-. .+....+..+.+.+++.+..||..|+..|..+
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 210 0 114678889999999999999999999999864321 12346777888999999999999998888744
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.80 E-value=2 Score=52.72 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhcCch-hHHhhHHhhhhhhcC--CChHHHHHHHHHHHHHhcCCCCchhhh-cHHHHHHHHhhc-----cC
Q 039884 228 FYHEIIFKIFQCSPQ-MLLAVIPNLIQELLV--DQVDVRIKAVNLIGKICAQPDNCLADR-YPELFVEFLKRF-----SD 298 (757)
Q Consensus 228 ~~~eli~el~~~~P~-lL~~ViP~l~~eL~s--d~~~~R~~At~llG~mfs~~~~~~~~~-~~~~w~~fL~R~-----~D 298 (757)
...+++..+....|+ ++..+++.+...+.+ .+-..|-.|.-.+|-+-+.-+...... .+.+...+++-. +|
T Consensus 432 ~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 466788888887775 455577888887763 566788999999997743211111223 466666665522 24
Q ss_pred CCHhHHHHHHHHh---HHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCC-C--------C--HH
Q 039884 299 KSAEVRLNALRCA---KACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKF-V--------P--EK 364 (757)
Q Consensus 299 ~s~~VR~~~v~~~---~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~-v--------~--~~ 364 (757)
..+-||....... ...+..|| ..-..+++.|-..+.|++.+||.+|+.++..++...-.. + | +.
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~ 589 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHH
Confidence 4556663222222 23444565 345678888999999999999999999998887532211 1 2 46
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 365 LISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 365 ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
++..+..-+.+-...-+...++++|.+-.
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66666665555455556667777777764
No 69
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.76 E-value=11 Score=46.30 Aligned_cols=163 Identities=12% Similarity=-0.001 Sum_probs=99.1
Q ss_pred HHHHHHHHhhcC-chhHHhhHHhhhhhhcC--CChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhcc-----CC
Q 039884 229 YHEIIFKIFQCS-PQMLLAVIPNLIQELLV--DQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFS-----DK 299 (757)
Q Consensus 229 ~~eli~el~~~~-P~lL~~ViP~l~~eL~s--d~~~~R~~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~-----D~ 299 (757)
+-+.|.-+.... ++++...+|.+...+.. .+=..|-.|+=.+|-+.+.+..+ ...-=|.+....++-.. |.
T Consensus 433 ~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~ 512 (1023)
T 4hat_C 433 EREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDN 512 (1023)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcc
Confidence 336666666544 45556677888777764 56888999999999987665432 22334556665555443 44
Q ss_pred CHhHHHH--HH-HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC-CC--------C--HHH
Q 039884 300 SAEVRLN--AL-RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLK-FV--------P--EKL 365 (757)
Q Consensus 300 s~~VR~~--~v-~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~-~v--------~--~~l 365 (757)
.+-||-. |+ -.-...+..||. .-..+++.|-..+.|+.++|..+||.++..++...-. .+ | +.+
T Consensus 513 k~~v~~t~~~~lGry~~wl~~~~~--~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i 590 (1023)
T 4hat_C 513 KAVVASDIMYVVGQYPRFLKAHWN--FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1023)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHCHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Confidence 4555521 32 222334455763 3557889999999999999999999999888753221 11 1 244
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 366 ISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 366 l~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
+..+..-+-+=...-+..+++++|.+=.
T Consensus 591 l~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 591 IRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4444333322245555566666665544
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.62 E-value=1.5 Score=44.75 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=130.5
Q ss_pred HHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHH
Q 039884 235 KIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSDKSAEVRLNALRCAKA 313 (757)
Q Consensus 235 el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 313 (757)
|+.+.+++.+.-++. -|..+|..++..|...+++|+..-+... ...+..++..+++=..+.+..|=+..+++.+.
T Consensus 26 ela~~~e~~l~~L~~----LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~ 101 (265)
T 3b2a_A 26 SLALEDKRALFLILE----LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGY 101 (265)
T ss_dssp HHHHHCHHHHHHHHH----HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHhchhHHHHHHH----HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 445556665554443 3467899999999999999998743222 35667788888888888899999989999999
Q ss_pred HHhcCCCc-chHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 314 CYLGGPFR-KESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 314 il~~~~~~-~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
++.+.|-+ ..-.-+.++|..-....++-.|..+...+..+ ..-...+.+...+...+.-|++.|.-.|+..|-++=
T Consensus 102 LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 102 LVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 99988842 33446899999999999999999999999877 444557889999999999999999999998887764
Q ss_pred HHHHHhhhcCchhhhhhhhchhHH
Q 039884 393 REYCKKCCEGQMTVCDHFEQIPCK 416 (757)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~wIP~~ 416 (757)
.. +++...+...|+.||.-
T Consensus 179 ~~-----S~D~~i~~~I~~eI~el 197 (265)
T 3b2a_A 179 NS-----SADSGHLTLILDEIPSL 197 (265)
T ss_dssp GG-----CSSCCCGGGTTTTHHHH
T ss_pred cc-----cCCHHHHHHHHHHHHHH
Confidence 32 23334455678888853
No 71
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.56 E-value=0.14 Score=57.94 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=106.5
Q ss_pred HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcc
Q 039884 244 LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRK 322 (757)
Q Consensus 244 L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~ 322 (757)
...++|.|..-|.+++..++..|...++.+...++... .-...........-..+.++.|+...+.....+...++.
T Consensus 249 ~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-- 326 (529)
T 3tpo_A 249 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-- 326 (529)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH--
T ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH--
Confidence 45678888888999999999999999999966542110 011122333334445677899999988888876644331
Q ss_pred hHH-----HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 323 ESR-----EILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 323 ~~~-----ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
... ..+..|...|.++++.||..|+-+++.++..... .+...++..+...+++....||++|...|+++-.
T Consensus 327 ~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 327 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 111 2345678889999999999999999998754332 2344677788888999999999999999988754
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.29 E-value=5.4 Score=48.38 Aligned_cols=124 Identities=17% Similarity=0.081 Sum_probs=88.1
Q ss_pred CCChHHHHHHHHHHHHHh-cCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHh-cCCCcchHHHHHHHHHHh
Q 039884 257 VDQVDVRIKAVNLIGKIC-AQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYL-GGPFRKESREILAALESR 334 (757)
Q Consensus 257 sd~~~~R~~At~llG~mf-s~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~-~~~~~~~~~ei~~~L~~r 334 (757)
..+..+|..|+--+|.+. +.+. .-|.+..- |. .+.++.||....-.. +++. .+| ..++++.|..-
T Consensus 589 d~~d~VRraAViaLGlI~~g~~e-----~v~rlv~~-L~--~~~d~~VR~gAalAL-Gli~aGn~----~~~aid~L~~L 655 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDYT-----TVPRIVQL-LS--KSHNAHVRCGTAFAL-GIACAGKG----LQSAIDVLDPL 655 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCS-----SHHHHTTT-GG--GCSCHHHHHHHHHHH-HHHTSSSC----CHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhccCCHH-----HHHHHHHH-HH--hcCCHHHHHHHHHHH-HHhccCCC----cHHHHHHHHHH
Confidence 456789999999999864 4432 12233322 22 356799999875444 4443 344 23788899999
Q ss_pred hcCCChhHHHHHHHHHHHhhhhccCCCCH---HHHHHHHHHhccCC--hhHHHHHHHHHHHHHH
Q 039884 335 LLDFDDRVRTEAVIVACDLARSHLKFVPE---KLISEATERLRDKK--ISIRKKALLKLLEVYR 393 (757)
Q Consensus 335 L~D~DekVR~aaV~~i~~l~~~~~~~v~~---~ll~~l~eR~rDKk--~~VR~~A~~~L~~lY~ 393 (757)
++|+|+.||..|+.++.-+....-+..++ .+++.++.-..||+ ..+|=-|.-..|-+..
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999998776665433 67788888887766 5577777777777763
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.02 E-value=14 Score=44.59 Aligned_cols=170 Identities=9% Similarity=0.089 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHhhcCchhH-HhhHHhhhhhhc------CCChHHHHHHHHHHHHHhcC---CCCchhh-----hcHHHH
Q 039884 225 LKEFYHEIIFKIFQCSPQML-LAVIPNLIQELL------VDQVDVRIKAVNLIGKICAQ---PDNCLAD-----RYPELF 289 (757)
Q Consensus 225 l~~~~~eli~el~~~~P~lL-~~ViP~l~~eL~------sd~~~~R~~At~llG~mfs~---~~~~~~~-----~~~~~w 289 (757)
.+..+.+++..+.+..++.+ ..++|.+..-|. +++-..|-.|.-.+|-+... +...... ...+.+
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 34457778888888888544 468888888887 67788999999999999532 1100111 222222
Q ss_pred HH-HHhhccCC---CHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---------
Q 039884 290 VE-FLKRFSDK---SAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARS--------- 356 (757)
Q Consensus 290 ~~-fL~R~~D~---s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~--------- 356 (757)
.. -+.-+.|. .+-||.....+...+-..-+ .+....++..+...|.|++..||.+|+.++..+...
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 22 23344666 89999988777765433212 134567889999999999999999999999887642
Q ss_pred cc--CCC-C--HHHHHHHHHHhccC-----ChhHHHHHHHHHHHHHHHH
Q 039884 357 HL--KFV-P--EKLISEATERLRDK-----KISIRKKALLKLLEVYREY 395 (757)
Q Consensus 357 ~~--~~v-~--~~ll~~l~eR~rDK-----k~~VR~~A~~~L~~lY~~~ 395 (757)
.+ ..+ | +.++..+...+..- +......++.+++.+-..+
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 11 112 2 46666666554432 1123456777777766544
No 74
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.71 E-value=1.9 Score=45.30 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=96.2
Q ss_pred ccchHHHHHHHHHHHhhcCchh---HH--hhHHhhhhhhcCC-ChHHHHHHHHHHHHHhcCCCC---chhhhcHHHHHHH
Q 039884 222 EGDLKEFYHEIIFKIFQCSPQM---LL--AVIPNLIQELLVD-QVDVRIKAVNLIGKICAQPDN---CLADRYPELFVEF 292 (757)
Q Consensus 222 ~~~l~~~~~eli~el~~~~P~l---L~--~ViP~l~~eL~sd-~~~~R~~At~llG~mfs~~~~---~~~~~~~~~w~~f 292 (757)
..++++.+-..|..++.-.|.. +. +++|.|-.-|.++ +..+|..|+-.|+.+....+. .|.. . ..+...
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~-ggi~~L 172 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-L-DGFSVL 172 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-T-THHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-C-CCHHHH
Confidence 4477788888999998887743 22 6889988888865 899999999999999754321 1222 1 244555
Q ss_pred HhhccCCCHhHHHHHHHHhHHHHhcCCCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 039884 293 LKRFSDKSAEVRLNALRCAKACYLGGPFRK---ESREILAALESRLLDFDDRVRTEAVIVACDLARS 356 (757)
Q Consensus 293 L~R~~D~s~~VR~~~v~~~~~il~~~~~~~---~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~ 356 (757)
+.=..+.++.||...+.....+...+++.. ....+++.|...|..+|..||..|+.++..+...
T Consensus 173 ~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 554556788999888777777666555321 1124678888899999999999999999888754
No 75
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.71 E-value=0.063 Score=55.17 Aligned_cols=63 Identities=25% Similarity=0.087 Sum_probs=37.3
Q ss_pred cCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC
Q 039884 297 SDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDK 376 (757)
Q Consensus 297 ~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDK 376 (757)
.|.++.||...+... +. +.|...+.|+|+.||.+++..+. ...+... .|.
T Consensus 180 ~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~ 229 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTVRLAAVEHAS--------------LEALREL-DEP 229 (244)
T ss_dssp TCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCC
T ss_pred cCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCC
Confidence 677777777665431 10 23445567777777777777641 1233334 777
Q ss_pred ChhHHHHHHHHHH
Q 039884 377 KISIRKKALLKLL 389 (757)
Q Consensus 377 k~~VR~~A~~~L~ 389 (757)
.+.||..|...||
T Consensus 230 ~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 230 DPEVRLAIAGRLG 242 (244)
T ss_dssp CHHHHHHHHCCC-
T ss_pred CHHHHHHHHHHhC
Confidence 7777777776654
No 76
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.01 E-value=6.4 Score=40.48 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=77.9
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC------CCCchhhhcHHHHHHH--
Q 039884 221 VEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ------PDNCLADRYPELFVEF-- 292 (757)
Q Consensus 221 ~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~------~~~~~~~~~~~~w~~f-- 292 (757)
.+.++++..-+.|.|.++-.|+++..++|.|..-|..+++.+-..|+.+.+.+|-. ...+......++|..+
T Consensus 65 ~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~ 144 (257)
T 3gs3_A 65 SNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL 144 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 44678889999999999999999999999999999999999999999999998852 1111122234688654
Q ss_pred -----HhhccCCCHhHHHHHHHHhHHHHh
Q 039884 293 -----LKRFSDKSAEVRLNALRCAKACYL 316 (757)
Q Consensus 293 -----L~R~~D~s~~VR~~~v~~~~~il~ 316 (757)
++.+...+..||+.+++++..++.
T Consensus 145 lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 145 IKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 567777899999999999999774
No 77
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.88 E-value=6.2 Score=40.10 Aligned_cols=135 Identities=16% Similarity=0.061 Sum_probs=97.7
Q ss_pred HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh-hccCCCHhHHHHHHHHhHHHHh-cCCCcc
Q 039884 245 LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLK-RFSDKSAEVRLNALRCAKACYL-GGPFRK 322 (757)
Q Consensus 245 ~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~-R~~D~s~~VR~~~v~~~~~il~-~~~~~~ 322 (757)
-..++....-.+++..++|..|+.++|+. . ..++.|..... =..|.+=.||-.+-.....++. .+|+
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 33445555555677799999999999998 3 22566765554 3558889999876677777775 6774
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 323 ESREILAALESRLLDFDDRVRTEAVIVACDLAR-SHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 323 ~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~-~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
+.++.+..=+.|.+..||..|....--.+. ..++.-|+.++..+.....|+..=||+---..|-.+-+
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 245677788999999999999888622111 23455677888888889999999999987777766544
No 78
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=91.77 E-value=30 Score=42.26 Aligned_cols=341 Identities=8% Similarity=0.050 Sum_probs=165.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHH--HH-
Q 039884 257 VDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAAL--ES- 333 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L--~~- 333 (757)
+.+..++..+.++++..++.-+.++... +++....++-.+| +++|...+++...++......+...+++..+ ..
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~ 280 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLF 280 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHH
Confidence 4677888999999999998755555443 5566666666665 8999999999988887655433333444333 11
Q ss_pred --hhc--CCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc-cCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhh
Q 039884 334 --RLL--DFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLR-DKKISIRKKALLKLLEVYREYCKKCCEGQMTVCD 408 (757)
Q Consensus 334 --rL~--D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~r-DKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~ 408 (757)
.+. +.|..++...++.++.++..-.. . ++.- .-....|..+...+..+...-..-....+..+..
T Consensus 281 ~~~l~~~~~D~d~~~~la~L~~~~ge~l~~--------~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~ 350 (980)
T 3ibv_A 281 FSKSQEQSTDPNFDEHVAKLINAQGVELVA--------I--KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETST 350 (980)
T ss_dssp HCC-----CCHHHHHHHHHHHHHHHHHHHH--------H--HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHH--------H--ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 222 57778888888777776543211 1 1000 0001223333333333333221111111111111
Q ss_pred -hhhchhHHHHhhh-cccc----cccch---hhhHHHHHHhccCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhh
Q 039884 409 -HFEQIPCKILMLC-YDKD----YKEFR---PQNIERILVEDLFPVLEVEESTRHWVHLFSL-FTPLHLKALNCVLSQKK 478 (757)
Q Consensus 409 -~~~wIP~~il~~~-y~~d----~~~~r---~~~ve~~l~e~LlP~~~~~~R~~~l~~l~~~-ld~~~~ka~~~i~~~k~ 478 (757)
.++..- .++..+ |... ...++ ..+++.++...-.|- +. -| .. -|..+...|..
T Consensus 351 ~t~~Fw~-~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~---d~---~~----~~~~d~ed~~~F~e------ 413 (980)
T 3ibv_A 351 AVFPFLS-DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE---SQ---EW----DDDPDSEEEAEFQE------ 413 (980)
T ss_dssp TTHHHHH-HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCT---TC---CC----CCCSSSSTHHHHHH------
T ss_pred HHHHHHH-HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCC---cc---cc----ccccchhHHHHHHH------
Confidence 111100 111100 1000 01111 224443333333332 21 01 11 11133444422
Q ss_pred HhHHHHHHHHHHHHhhhCCCchHHHHHHHHH-HHHHHhhCCCc-----chHHHHHHHHHhccchhHHHHHHh-hh---ch
Q 039884 479 RFRSEMRYYLSVRKKEKGSCHDETHEQMKNS-FVKMSASFPDP-----SKAEGCFQRLNEMKDNKIFNSLEE-LL---DN 548 (757)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~-i~~ls~~fpd~-----~ka~~~l~~f~~~~D~ri~~ll~~-~~---d~ 548 (757)
+|+.+..+++.+.-. ..+....++-.. -.++.+.+... ...|..|..+..+-|. ++. .. +.
T Consensus 414 -~Rk~l~~l~d~~~~l---~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~-----i~~~~~~~~~~ 484 (980)
T 3ibv_A 414 -MRKKLKIFQDTINSI---DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEG-----LRGPDAFFNEV 484 (980)
T ss_dssp -HHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTT-----CCSGGGTBCSS
T ss_pred -HHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhh-----ccccccccCcc
Confidence 445555666666554 222333333323 33444444211 1233333333322221 000 00 00
Q ss_pred hh-HHHHHHHHHHHHHHhc-----CCCc--HHHHHHHHHHhhh-hhcChhhHHHHHHhhhc--Ccc-cCchhhHHHHHHH
Q 039884 549 MT-IKNAEILRDKFLKLIG-----NKHP--EFEFLQLLTSKCL-YIFDSELVCCIVNGLSS--NRY-ADKHLEDSSINLL 616 (757)
Q Consensus 549 ~t-~~~a~~~~e~~~K~~~-----~~~~--~~~~~k~Ll~r~s-~~~n~s~v~~ll~~~~~--~~~-~~~~~~~~a~~LL 616 (757)
.. +.. .-+.+.+++. ..|| .+-++..+.+-+. +-.+++.++.+++.+-+ ... .+.....+|--++
T Consensus 485 ~~~lp~---l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af 561 (980)
T 3ibv_A 485 DKSPTV---LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLF 561 (980)
T ss_dssp SCCBCH---HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHH
Confidence 01 111 1245555544 2456 3467677777777 88889999999998765 322 2335667888999
Q ss_pred HHHHhhCCcCCcccHHHHHHHHh
Q 039884 617 LAIISIFPSLLRGSEVQFQKLLE 639 (757)
Q Consensus 617 ~~iS~~~P~lf~~~~~~L~~~l~ 639 (757)
..+.+.++..+.++.+.+...+.
T Consensus 562 ~~f~~~~~~~L~~~~~~il~~l~ 584 (980)
T 3ibv_A 562 YRFVKSIKKQVVNYTESSLAMLG 584 (980)
T ss_dssp HHHHHHTTTTCSSSHHHHHHHTT
T ss_pred HHHHHHhhHHhhhHHHHHHHHHH
Confidence 99999999999999888777653
No 79
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.35 E-value=31 Score=41.64 Aligned_cols=134 Identities=9% Similarity=0.074 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhcc---CCCHhHHHHHHHHhHHHHhcC-----CCc------chHH
Q 039884 260 VDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFS---DKSAEVRLNALRCAKACYLGG-----PFR------KESR 325 (757)
Q Consensus 260 ~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~---D~s~~VR~~~v~~~~~il~~~-----~~~------~~~~ 325 (757)
...|..|..++..+...-+......--+.-...+.++. +.+...|-+.+-....+.... +.. +...
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 46899999999888654331111111111223333321 223445555555444443210 111 2221
Q ss_pred HHHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDF---DDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 326 ei~~~L~~rL~D~---DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
-+.+.+...+.|+ ...||.+||.++..++..-....-..++..+...+.|..+.||..|...|..+-.
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 2234455567788 8999999999998887532111123566777788999999999999999887643
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=90.06 E-value=17 Score=37.12 Aligned_cols=167 Identities=12% Similarity=0.102 Sum_probs=130.9
Q ss_pred cchHHHHHHHHHHHhhcCch-----hHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhcc
Q 039884 223 GDLKEFYHEIIFKIFQCSPQ-----MLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFS 297 (757)
Q Consensus 223 ~~l~~~~~eli~el~~~~P~-----lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~ 297 (757)
+.++.++--+|.++-+-.|. .+-.++|-+-.-+.++|+.+=+.|.++++.++..-+. --.+|.-+-+++.+=..
T Consensus 47 ~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL-~~~~y~Kl~~aL~dlik 125 (265)
T 3b2a_A 47 ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM-GSKTFLKAAKTLVSLLE 125 (265)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHhc
Confidence 35555666677777776554 4556888888889999999999999999999975332 13567677777777777
Q ss_pred CCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHhccC
Q 039884 298 DKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPEKLISEATERLRDK 376 (757)
Q Consensus 298 D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~~ll~~l~eR~rDK 376 (757)
..++-+|....+....+ .+. .....+.+.+-.-+.-.|-+|-.++..++..++..+= ..+-+.+++.+.+.++-+
T Consensus 126 ~~~~il~~eaae~Lgkl---kv~-~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~e 201 (265)
T 3b2a_A 126 SPDDMMRIETIDVLSKL---QPL-EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQND 201 (265)
T ss_dssp SCCHHHHHHHHHHHHHC---CBS-CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCS
T ss_pred CCCchHHHHHHHHhCcC---Ccc-cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCC
Confidence 88888988888887765 222 2245788888888899999999999999999985443 345668888899999999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 039884 377 KISIRKKALLKLLEVYRE 394 (757)
Q Consensus 377 k~~VR~~A~~~L~~lY~~ 394 (757)
.+.+|+.|+..|-.+...
T Consensus 202 D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 202 NEFIVELALDVLEKALSF 219 (265)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 999999999999988765
No 81
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.46 E-value=0.23 Score=50.92 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHH
Q 039884 228 FYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNA 307 (757)
Q Consensus 228 ~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~ 307 (757)
.+..-|..+....|+++.. -+..++..+|..|.+.+ +. . .+..-.+|.++.||...
T Consensus 39 ~~~~ri~~~~~~~p~l~~~-------ll~d~~~~VR~~AA~~l------~~--------~---~l~~L~~D~~~~VR~~a 94 (244)
T 1lrv_A 39 ESGRQIDRFFRNNPHLAVQ-------YLADPFWERRAIAVRYS------PV--------E---ALTPLIRDSDEVVRRAV 94 (244)
T ss_dssp SCHHHHHHHHHHCGGGGGG-------GTTCSSHHHHHHHHTTS------CG--------G---GGGGGTTCSSHHHHHHH
T ss_pred CcHHHHHHHHcCCHHHHHH-------HhcCCCHHHHHHHHHhC------CH--------H---HHHHHccCcCHHHHHHH
Confidence 3444556666667877654 34677899999888853 10 1 14444588888888887
Q ss_pred HHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHH
Q 039884 308 LRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLK 387 (757)
Q Consensus 308 v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~ 387 (757)
++.. |. ..|...+.|+|..||.+++..+ +.++ +.....|..+.||..+...
T Consensus 95 A~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l-----------~~~~---L~~L~~D~d~~VR~~aA~~ 145 (244)
T 1lrv_A 95 AYRL-------PR--------EQLSALMFDEDREVRITVADRL-----------PLEQ---LEQMAADRDYLVRAYVVQR 145 (244)
T ss_dssp HTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHS-----------CTGG---GGGGTTCSSHHHHHHHHHH
T ss_pred HHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-----------CHHH---HHHHHcCCCHHHHHHHHHh
Confidence 6431 21 2456778888888888887743 2233 2344678888888888763
No 82
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.09 E-value=51 Score=39.40 Aligned_cols=238 Identities=11% Similarity=0.093 Sum_probs=134.9
Q ss_pred HHHHHHhhh--hcccC--CCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCC-CCcc-hhHHHHHH
Q 039884 33 PLRKSIIKH--GLLHQ--NDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNT-GCPF-FSKRVKIL 106 (757)
Q Consensus 33 ~~~~~L~~~--~lL~h--kd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~-~~~~-f~~~~~lL 106 (757)
|+...|++. .++.+ -+.++|..+-.|++.|..- +| ..-....+..+...++..+..+.+. .++. ..+..+.+
T Consensus 564 p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~-~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l 641 (963)
T 2x19_B 564 PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA-LQ-VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHIL 641 (963)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-SC-HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc-CC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444444432 33443 2567999999999999853 33 0001234566666666666655432 2333 34556788
Q ss_pred HHHHhh-hhhhhhcc--C----------------CchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCC--
Q 039884 107 EIVARS-KCFVIMLD--I----------------DCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEET-- 165 (757)
Q Consensus 107 e~la~v-ks~vl~~D--l----------------~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~-- 165 (757)
+.++.+ +.+.-... . +...+...++..+..+... ......+...+...+...+....
T Consensus 642 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 642 GLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSK--WLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHHHhhccc
Confidence 888655 43321111 0 0123455555555554431 11112444445556665544311
Q ss_pred Chh----HHHHHHHHhhccccCCcchHHHHHHHHHh--hchhhhhHHHHHHhhhhcc------CCC-ccccchHHHHHHH
Q 039884 166 SLP----LLEVVLWNLVKQEKDSPYAASQLAVSVIR--NCAEKLEPFVCGFLTSCFL------DRD-AVEGDLKEFYHEI 232 (757)
Q Consensus 166 ~~~----lld~Il~~l~~~~~~~~~~a~~lA~~vi~--~~~~~l~~~i~~~~~~~~~------~~~-~~~~~l~~~~~el 232 (757)
-.| +++.++..+... ..+..-.++..++. .......+.+.++++.++. ..+ ....++.+.++++
T Consensus 720 ~~~~l~~~~~~l~~~~~~~---~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~l 796 (963)
T 2x19_B 720 FAPMVPQLCEMLGRMYSTI---PQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQL 796 (963)
T ss_dssp TGGGHHHHHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcC---CccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHH
Confidence 133 445444443321 23455677788887 4444455666555443321 111 1234777889999
Q ss_pred HHHHhhcCchh-------HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCC
Q 039884 233 IFKIFQCSPQM-------LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQP 277 (757)
Q Consensus 233 i~el~~~~P~l-------L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~ 277 (757)
+..+.+.+|.. +..+++.+..-|...+..+-..|...+.+|++..
T Consensus 797 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 797 LAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999988866 5567777888889999999999999999998753
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.98 E-value=28 Score=42.44 Aligned_cols=217 Identities=13% Similarity=0.207 Sum_probs=145.5
Q ss_pred hhHHHHHHHHhhccccCCcchHHHHHHHHHhhc--hhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhc-Cchh
Q 039884 167 LPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNC--AEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQC-SPQM 243 (757)
Q Consensus 167 ~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~--~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~-~P~l 243 (757)
..+++.+...+-.. |+. -.|-..-..+++.. +..++||+-.++..++..-......+++-+..-+..+.+. .|.-
T Consensus 53 ~~~~~~~~~~~~~k-~~~-~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 53 EHFFGELAKGIKDK-KTA-ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHHTSH-HHH-HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hhHHHHHHHHHhcc-CCH-HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 34666666444432 221 22223334455333 3367898877777665322223346676677777777764 4557
Q ss_pred HHhhHHhhhhhhcCC-ChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHH--hcCCC
Q 039884 244 LLAVIPNLIQELLVD-QVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACY--LGGPF 320 (757)
Q Consensus 244 L~~ViP~l~~eL~sd-~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il--~~~~~ 320 (757)
+..++|.|...|.+. .=+.+..|.+++++|-...+..++...|++.-..-....|..++|-.+..++...+- +.|.+
T Consensus 131 ~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 131 IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 788999999999866 478999999999999855456788999999999999999999999987665555443 23443
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-CCCCHHHH---HHHHHHh-ccCChhHHHHHHHHHHHHHH
Q 039884 321 RKESREILAALESRLLDFDDRVRTEAVIVACDLARSHL-KFVPEKLI---SEATERL-RDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 321 ~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~-~~v~~~ll---~~l~eR~-rDKk~~VR~~A~~~L~~lY~ 393 (757)
..--++.|-+++.+|++ +-+++..++..+| ..|....| -=+..|. +++...+.+.+.....++-+
T Consensus 211 ---~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 211 ---IERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp ---TGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred ---hhhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 22357888899999966 5566777787777 45655433 3344553 57777777777666666654
No 84
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.96 E-value=43 Score=37.41 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=130.2
Q ss_pred hhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCC
Q 039884 281 LADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKF 360 (757)
Q Consensus 281 ~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~ 360 (757)
-+.+|-+-|..+|.-..= ++......-+.++.+...=|+. +.+-++++-+..-|.|..||.+|++.+-.+.+. +.
T Consensus 23 k~~~~~~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~ 97 (507)
T 3u0r_A 23 QVGQHKDAYQVILDGVKG-GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN 97 (507)
T ss_dssp GGGGGHHHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC
T ss_pred cccccHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh
Confidence 345688999999997666 5666666679999999988854 568899999999999999999999999777655 33
Q ss_pred CCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhhhcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHh
Q 039884 361 VPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVE 440 (757)
Q Consensus 361 v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e 440 (757)
-..+-..|++.+--=.+..+...=+.|..+|+..- ...++.+-+.|... + +..|...+ .-+.+
T Consensus 98 -i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp----------k~tl~~lf~~i~~~----~-e~~Rer~l-kFi~~ 160 (507)
T 3u0r_A 98 -LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA----------KGTLGGLFSQILQG----E-DIVRERAI-KFLST 160 (507)
T ss_dssp -HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHHS----C-HHHHHHHH-HHHHH
T ss_pred -hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh----------HHHHHHHHHHHccc----c-hHHHHHHH-HHHHH
Confidence 33445555555555556777777788888887521 12222223333321 1 11221111 13345
Q ss_pred ccCCC----CCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHhhhC-----C-CchHHHH
Q 039884 441 DLFPV----LEVEESTR----HWVHLFSLFTPLHLKALNCVLSQKKRFR--SEMRYYLSVRKKEKG-----S-CHDETHE 504 (757)
Q Consensus 441 ~LlP~----~~~~~R~~----~l~~l~~~ld~~~~ka~~~i~~~k~~~~--~~~~~~l~~~~~~~~-----~-~~~~~~~ 504 (757)
.+.|. +. ++--. ..-.++..........|..+++.-.-.+ .-.++++++..+.-+ . .+++.-.
T Consensus 161 kl~~l~~~~l~-~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vd 239 (507)
T 3u0r_A 161 KLKTLPDEVLT-KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVD 239 (507)
T ss_dssp HGGGSCTTTSC-HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHH
T ss_pred HHhhcchhhcc-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHH
Confidence 66554 33 22111 1223335556666777777775222111 122333444332211 0 1233445
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHH
Q 039884 505 QMKNSFVKMSASFPDPSKAEGCFQ 528 (757)
Q Consensus 505 kl~~~i~~ls~~fpd~~ka~~~l~ 528 (757)
++..++..-..+|.-.......+.
T Consensus 240 RlI~C~~~ALP~FS~~v~StkFv~ 263 (507)
T 3u0r_A 240 RLLQCTRQAVPLFSKNVHSTRFVT 263 (507)
T ss_dssp HHHHHHHHHGGGCBTTBCCHHHHH
T ss_pred HHHHHHHHHHHHhccCCChHHHHH
Confidence 666677666666765555444433
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.22 E-value=4.7 Score=44.55 Aligned_cols=143 Identities=12% Similarity=0.082 Sum_probs=91.4
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC-chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN-CLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESR 325 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~-~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 325 (757)
.+|.+-.-|.++++.+|..|+..++.+-...+. ...-........++.-....++.++...+.....+...+++. ..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~--k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN--KL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH--HH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH--HH
Confidence 467788889999999999999999998543321 111112223444444445667889888877777766544432 22
Q ss_pred HH-----HHHHHHhhc-CCChhHHHHHHHHHHHhhhhcc-C--CCCHHHHHHHHHHh--------cc--------CChhH
Q 039884 326 EI-----LAALESRLL-DFDDRVRTEAVIVACDLARSHL-K--FVPEKLISEATERL--------RD--------KKISI 380 (757)
Q Consensus 326 ei-----~~~L~~rL~-D~DekVR~aaV~~i~~l~~~~~-~--~v~~~ll~~l~eR~--------rD--------Kk~~V 380 (757)
.| ++.|-+.|. ..++.||..|+.++..++...- + .+. ..+..+.+.+ ++ -...|
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 33 577888888 7899999999999998885411 1 223 4555555555 21 23455
Q ss_pred HHHHHHHHHHHH
Q 039884 381 RKKALLKLLEVY 392 (757)
Q Consensus 381 R~~A~~~L~~lY 392 (757)
++.|...|+++=
T Consensus 160 ~~~a~~aL~nLs 171 (457)
T 1xm9_A 160 FFNATGCLRNLS 171 (457)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 556666666553
No 86
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.09 E-value=38 Score=41.65 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=96.4
Q ss_pred HHHHHHHHhh----cCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhc----cCCC
Q 039884 229 YHEIIFKIFQ----CSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRF----SDKS 300 (757)
Q Consensus 229 ~~eli~el~~----~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~----~D~s 300 (757)
+-.+++..+. |.++++..+...+...+...+...+..+.+.||.+ +.|.+ - +....++.-+ .+..
T Consensus 419 ~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~-g~p~~-----l-~~l~~~l~~~~~~~~~~~ 491 (1056)
T 1lsh_A 419 YGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA-GQPNS-----I-KKIQRFLPGQGKSLDEYS 491 (1056)
T ss_dssp HHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCGGG-----H-HHHHTTSTTSSSCCCCSC
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-CChhH-----H-HHHHHhhcCccccccccc
Confidence 3455665553 34466777777788888888999999999999999 55421 1 1233333221 2334
Q ss_pred HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhh--cCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc-CC
Q 039884 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRL--LDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRD-KK 377 (757)
Q Consensus 301 ~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL--~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rD-Kk 377 (757)
..||.++|.....+-..+|. .+-+.|-.-. .+.+..||.+|+..+-. .. -+..++..+++.+.. ++
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~-----~v~~il~~i~~n~~e~~EvRiaA~~~Lm~---t~---P~~~~l~~ia~~l~~E~~ 560 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPR-----KVQEIVLPIFLNVAIKSELRIRSCIVFFE---SK---PSVALVSMVAVRLRREPN 560 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHH-----HHHHHHHHHHHCTTSCHHHHHHHHHHHHH---TC---CCHHHHHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHhhhhchH-----HHHHHHHHHhcCCCCChHHHHHHHHHHHH---HC---cCHHHHHHHHHHHhhCch
Confidence 56888888887776654441 3445555666 45677899999998832 22 245788888887765 88
Q ss_pred hhHHHHHHHHHHHHHH
Q 039884 378 ISIRKKALLKLLEVYR 393 (757)
Q Consensus 378 ~~VR~~A~~~L~~lY~ 393 (757)
..|+.-....|-.+-+
T Consensus 561 ~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 561 LQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888777776665544
No 87
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.02 E-value=14 Score=41.37 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=96.1
Q ss_pred HHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHH
Q 039884 194 SVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKI 273 (757)
Q Consensus 194 ~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~m 273 (757)
+++....+++......|-..+. +...+...++-+..+|..-|+.-|++--..|--+-+-...+|+.+|..|++-|..+
T Consensus 15 ~~L~da~dk~~~~~~~y~~Il~--~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ 92 (507)
T 3u0r_A 15 GILADATEQVGQHKDAYQVILD--GVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQF 92 (507)
T ss_dssp HHHHHTGGGGGGGHHHHHHHHH--GGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGG
T ss_pred hHhhhccccccccHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHH
Confidence 3566667777766666654322 21123355667888899999999998888777777767788899999999988887
Q ss_pred hcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 039884 274 CAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDL 353 (757)
Q Consensus 274 fs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l 353 (757)
--. .+...--++....|. .| ++.-+..+=+....++..+| ...+.+|..-+.-+||.||..+++-|++-
T Consensus 93 ck~---~~i~kiaDvL~QlLq--td-d~~E~~~V~~sL~sllk~Dp-----k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 93 ATG---ENLPRVADILTQLLQ--TD-DSAEFNLVNNALLSIFKMDA-----KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp CCT---TCHHHHHHHHHHHTT--CC-CHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hhh---hhhhhHHHHHHHHHh--cc-chHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 533 445666666666666 33 23333333344466665554 23455566666667899998888777554
Q ss_pred h
Q 039884 354 A 354 (757)
Q Consensus 354 ~ 354 (757)
.
T Consensus 162 l 162 (507)
T 3u0r_A 162 L 162 (507)
T ss_dssp G
T ss_pred H
Confidence 3
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=84.93 E-value=3.1 Score=49.34 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=100.5
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC--chhhhcHHHHHHHHhhccCCC---HhHHHHHHHHhHHHHhc-CC
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN--CLADRYPELFVEFLKRFSDKS---AEVRLNALRCAKACYLG-GP 319 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~--~~~~~~~~~w~~fL~R~~D~s---~~VR~~~v~~~~~il~~-~~ 319 (757)
+|+|.|-..|.+++...|..|++.++.|-..+.. .++++ ......+.-....+ ..+|.........++.+ +|
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 5999999999999999999999999999544321 12222 22333333333333 34888888888887754 33
Q ss_pred Cc----chHHHHHHHHHHhhc-CCCh-------------hHHHHHHHHHHHhhhhc------c--CCCC-HHHHHHHHHH
Q 039884 320 FR----KESREILAALESRLL-DFDD-------------RVRTEAVIVACDLARSH------L--KFVP-EKLISEATER 372 (757)
Q Consensus 320 ~~----~~~~ei~~~L~~rL~-D~De-------------kVR~aaV~~i~~l~~~~------~--~~v~-~~ll~~l~eR 372 (757)
.. ....+.++.|..-|. |++. .-+..|..++..++... . +.+. ...+..+-+.
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 21 111266788888877 2332 23889999988888542 1 2444 3678889999
Q ss_pred hccCChhHHHHHHHHHHHHHH
Q 039884 373 LRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 373 ~rDKk~~VR~~A~~~L~~lY~ 393 (757)
+.+-+..||+.|...++++-.
T Consensus 615 L~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=83.77 E-value=3.8 Score=44.05 Aligned_cols=149 Identities=10% Similarity=0.027 Sum_probs=92.9
Q ss_pred hhHHhhhhh-hcCCChHHHHHHHHHHHHHhcCCCCc--hhhhcHHHHHHHHhhccCCCH----hHHHHHHHHhHHHHh--
Q 039884 246 AVIPNLIQE-LLVDQVDVRIKAVNLIGKICAQPDNC--LADRYPELFVEFLKRFSDKSA----EVRLNALRCAKACYL-- 316 (757)
Q Consensus 246 ~ViP~l~~e-L~sd~~~~R~~At~llG~mfs~~~~~--~~~~~~~~w~~fL~R~~D~s~----~VR~~~v~~~~~il~-- 316 (757)
.++|.|-.- +.+.+..++..|+.+++.+-+..+.+ -.......-....+-..+.+. +|+...+-....+-.
T Consensus 170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 467777776 45678889999999999985422111 011112222222232232222 465544333333221
Q ss_pred -cCCCcch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 317 -GGPFRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 317 -~~~~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
.+++... ....+..|-+.|.+.++.|+..|+.++..++..+.+ .+....+..+.+.++.++..||+.|...|
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2332110 012467888899999999999999999998853321 23446678888999999999999999999
Q ss_pred HHHHHH
Q 039884 389 LEVYRE 394 (757)
Q Consensus 389 ~~lY~~ 394 (757)
.++-..
T Consensus 330 ~nL~~~ 335 (354)
T 3nmw_A 330 RNLMAN 335 (354)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 988764
No 90
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.53 E-value=11 Score=41.17 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHh
Q 039884 222 EGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKIC 274 (757)
Q Consensus 222 ~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mf 274 (757)
+.++++..-++|.|.++-.++++..+++.|..-|..+++.+-..|+.+.+.+|
T Consensus 76 ~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 76 SIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44677778888888888888888888888888888888888888888777764
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=82.04 E-value=3.2 Score=49.20 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=76.6
Q ss_pred hHH--hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC---chhh-hcHH------HHHHHHhhccCCCHhHHHHHHHH
Q 039884 243 MLL--AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN---CLAD-RYPE------LFVEFLKRFSDKSAEVRLNALRC 310 (757)
Q Consensus 243 lL~--~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~---~~~~-~~~~------~w~~fL~R~~D~s~~VR~~~v~~ 310 (757)
++. .++|.|++-|.++++.+|..|+++++.|.+.|.. .|+. ..|. +|-.++ ..-+.++|.+..-.
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll---~s~D~~~r~AAagA 677 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL---QLSDVESQRAVAAI 677 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG---GCSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH---cCCCHHHHHHHHHH
Confidence 554 4899999999999999999999999999987752 3432 1233 455555 33567888776433
Q ss_pred hHHHHhcCCCc----chHHHHHHHHHHhhcC--CChhHHHHHHHHHHHhhhhccCCCCH
Q 039884 311 AKACYLGGPFR----KESREILAALESRLLD--FDDRVRTEAVIVACDLARSHLKFVPE 363 (757)
Q Consensus 311 ~~~il~~~~~~----~~~~ei~~~L~~rL~D--~DekVR~aaV~~i~~l~~~~~~~v~~ 363 (757)
...+-..+|.. -...+.++.+..-|.| .|+.+|..++.++..++.-.....++
T Consensus 678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~ 736 (778)
T 3opb_A 678 FANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTN 736 (778)
T ss_dssp HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTT
T ss_pred HHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCCh
Confidence 33322223310 0012445566677777 78889998888888887643433333
No 92
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=81.21 E-value=3.1 Score=51.01 Aligned_cols=169 Identities=10% Similarity=0.005 Sum_probs=119.5
Q ss_pred chHHH-HHHHHHHHhh--cCchhHHhhHHhhhhhhc-CCChHHHHHHHHHHHHHhcCCCCch-hhhcHHHHHHHHhhccC
Q 039884 224 DLKEF-YHEIIFKIFQ--CSPQMLLAVIPNLIQELL-VDQVDVRIKAVNLIGKICAQPDNCL-ADRYPELFVEFLKRFSD 298 (757)
Q Consensus 224 ~l~~~-~~eli~el~~--~~P~lL~~ViP~l~~eL~-sd~~~~R~~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D 298 (757)
+|.+. ++-++..+.. +.|+.+..|+-.|+.-.+ +.+- .|..+...+--++-..---+ -.+...+|...+.-..|
T Consensus 776 eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D 854 (997)
T 1vsy_5 776 ALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYN 854 (997)
T ss_dssp HHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTC
T ss_pred HHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC
Confidence 34433 3334444423 345566667777777666 4566 88888666533332210000 13446899999999999
Q ss_pred CC-HhHHHHHHHHhHHHHhcC-CCcchHHHHHHHHHHhhcC------------CChhHHHHHHHHHHHhhhhccCCC--C
Q 039884 299 KS-AEVRLNALRCAKACYLGG-PFRKESREILAALESRLLD------------FDDRVRTEAVIVACDLARSHLKFV--P 362 (757)
Q Consensus 299 ~s-~~VR~~~v~~~~~il~~~-~~~~~~~ei~~~L~~rL~D------------~DekVR~aaV~~i~~l~~~~~~~v--~ 362 (757)
.. ++||...-+...+++... +.. ...+++..+.+++.- .+...|.++|.++|.+....+-.+ |
T Consensus 855 ~q~~EVRe~Aa~tLsgll~c~~~~~-~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P 933 (997)
T 1vsy_5 855 EQFVEVRVRAASILSDIVHNWKEEQ-PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLP 933 (997)
T ss_dssp SSCHHHHHHHHHHHHHHHHSCCSHH-HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCCchh-hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99 999999988888888766 522 233777788887733 233689999999999998877776 4
Q ss_pred ---HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884 363 ---EKLISEATERLRDKKISIRKKALLKLLEVYREY 395 (757)
Q Consensus 363 ---~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~ 395 (757)
+++|..|+....|. ..|++.+=++|++.++.+
T Consensus 934 ~w~P~~l~~La~~~~~~-~~i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 934 PWIPKNLSNLSSWARTS-GMTGNAAKNTISEFKKVR 968 (997)
T ss_dssp THHHHHHHHHHTTSSSC-SSHHHHTHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhCCC-CchHHHHHHHHHHHHhcc
Confidence 38999999999994 559999999999999986
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.67 E-value=37 Score=41.43 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=52.1
Q ss_pred HHHHHHHHhhccccC-CcchHHHHHHHHHhhchhhhhHHHHHHhhhhcc-------CCCccccchHHHHHHHHHHHhhcC
Q 039884 169 LLEVVLWNLVKQEKD-SPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFL-------DRDAVEGDLKEFYHEIIFKIFQCS 240 (757)
Q Consensus 169 lld~Il~~l~~~~~~-~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~-------~~~~~~~~l~~~~~eli~el~~~~ 240 (757)
+++.++..+.+.... ..+.+..++..++...+..+.+++.+.+..+.. ++-....++.+.++.++..+.+.+
T Consensus 756 ~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~ 835 (1049)
T 3m1i_C 756 LLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS 835 (1049)
T ss_dssp HHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhC
Confidence 445555544331111 125577889999999998888888876654421 222234578888999999999999
Q ss_pred chhHHh
Q 039884 241 PQMLLA 246 (757)
Q Consensus 241 P~lL~~ 246 (757)
|..+.+
T Consensus 836 ~~~l~~ 841 (1049)
T 3m1i_C 836 FAAFLE 841 (1049)
T ss_dssp THHHHH
T ss_pred HHHHHc
Confidence 988765
No 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=80.64 E-value=4.2 Score=45.39 Aligned_cols=147 Identities=11% Similarity=0.042 Sum_probs=91.6
Q ss_pred hhHHhhhhh-hcCCChHHHHHHHHHHHHHhcCC-C--CchhhhcHHHHH---HHHhhccCC-CHhHHHHHHHHhHHHHh-
Q 039884 246 AVIPNLIQE-LLVDQVDVRIKAVNLIGKICAQP-D--NCLADRYPELFV---EFLKRFSDK-SAEVRLNALRCAKACYL- 316 (757)
Q Consensus 246 ~ViP~l~~e-L~sd~~~~R~~At~llG~mfs~~-~--~~~~~~~~~~w~---~fL~R~~D~-s~~VR~~~v~~~~~il~- 316 (757)
+++|.|-.- +.+.+..++..|+..++.+-+.. + ..+.. ....-. ..|..-.|. ..+|+...+.....+-.
T Consensus 286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~ 364 (458)
T 3nmz_A 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364 (458)
T ss_dssp THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence 467777775 45678889999999999985522 1 11111 111222 223222221 11355544333333221
Q ss_pred --cCCCcch---HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHHHHHHhccCChhHHHHHHHH
Q 039884 317 --GGPFRKE---SREILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISEATERLRDKKISIRKKALLK 387 (757)
Q Consensus 317 --~~~~~~~---~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~l~eR~rDKk~~VR~~A~~~ 387 (757)
.+++... ....+..|...|.+.++.|+..|+.++..++..+.+ .+....+..+.+.++.+...||+.|...
T Consensus 365 ~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 2332111 012467788899999999999999999998853331 3445677888899999999999999999
Q ss_pred HHHHHH
Q 039884 388 LLEVYR 393 (757)
Q Consensus 388 L~~lY~ 393 (757)
|.+|-.
T Consensus 445 L~nL~~ 450 (458)
T 3nmz_A 445 LRNLMA 450 (458)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 998864
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.63 E-value=12 Score=45.80 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=102.6
Q ss_pred hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC--chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchH
Q 039884 247 VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN--CLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKES 324 (757)
Q Consensus 247 ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~--~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 324 (757)
++..|...+..-... ..|...++.++...+. .+---.=+++..-|..+.||...||.++-..+..++.+-|... .
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-~ 131 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-I 131 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-H
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-H
Confidence 334444444443333 7888888888854322 1100001346788899999999999999777777776544322 3
Q ss_pred HHHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccCCCC---HHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 325 REILAALESRLLDF-DDRVRTEAVIVACDLARSHLKFVP---EKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 325 ~ei~~~L~~rL~D~-DekVR~aaV~~i~~l~~~~~~~v~---~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
..+++.|..-+..+ .+..+.+|...+..++...+..+. ++++=.+.+-|-|-|+.|.+.|..++.++..
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 57788888888666 699999999999999876554333 4788889999999999999999999887654
No 96
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=76.39 E-value=25 Score=37.48 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=90.8
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC---chhhh---cHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN---CLADR---YPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP 319 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~---~~~~~---~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 319 (757)
.+||.|-.-|.++++.+|..|+..|+.+-..++. ....+ =|.+.+ .|.+. .+++++...+.....+-..++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~-lL~~~--~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME-CALEV--KKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH-HHHHC--CCHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH-HHhcC--CCHHHHHHHHHHHHHHHccCh
Confidence 5699999999999999999999999999543221 11111 122322 22332 356777655544443322122
Q ss_pred Cc--ch--HHHHHHHHHHhhcCCCh----hHHHHHHHHHHHhhh---hcc----CCCCHHHHHHHHHHhccCChhHHHHH
Q 039884 320 FR--KE--SREILAALESRLLDFDD----RVRTEAVIVACDLAR---SHL----KFVPEKLISEATERLRDKKISIRKKA 384 (757)
Q Consensus 320 ~~--~~--~~ei~~~L~~rL~D~De----kVR~aaV~~i~~l~~---~~~----~~v~~~ll~~l~eR~rDKk~~VR~~A 384 (757)
+. .. ....++.|.+.|.+.++ .|+..|+-++..++. ... ..+....+..+.+.+++....|+++|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 11 11 11345667777877665 499999888877764 111 12344578888899999999999999
Q ss_pred HHHHHHH
Q 039884 385 LLKLLEV 391 (757)
Q Consensus 385 ~~~L~~l 391 (757)
...|+++
T Consensus 284 ~~aL~nL 290 (354)
T 3nmw_A 284 CGTLWNL 290 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998887
No 97
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=76.17 E-value=30 Score=38.43 Aligned_cols=166 Identities=10% Similarity=0.046 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHhhcCc---hhH---HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCC---chhhhc---HHHHHH
Q 039884 224 DLKEFYHEIIFKIFQCSP---QML---LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDN---CLADRY---PELFVE 291 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P---~lL---~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~---~~~~~~---~~~w~~ 291 (757)
.+.+.+-..|..|....+ ..+ ...||.|-.-|.++++++|..|+..|+.+-...+. ..+.+. |.+..
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~- 293 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME- 293 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH-
Confidence 455666777777776544 233 35699999999999999999999999998432111 111111 22222
Q ss_pred HHhhccCCCHhHHHHHHHHhHHHHhcCCCc--ch--HHHHHHHHHHhhcCCCh----hHHHHHHHHHHHhhh---hccC-
Q 039884 292 FLKRFSDKSAEVRLNALRCAKACYLGGPFR--KE--SREILAALESRLLDFDD----RVRTEAVIVACDLAR---SHLK- 359 (757)
Q Consensus 292 fL~R~~D~s~~VR~~~v~~~~~il~~~~~~--~~--~~ei~~~L~~rL~D~De----kVR~aaV~~i~~l~~---~~~~- 359 (757)
.|.+ ..++.++...+.....+-..+++. .. ....+..|...|...++ .|+..|+-++..++. ....
T Consensus 294 lLl~--s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 294 CALE--VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHTT--CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 2233 235677766555544433212211 01 11245677777777665 499999998887764 1111
Q ss_pred ---CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 039884 360 ---FVPEKLISEATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 360 ---~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
.+....+..+.+.+++....|+++|...|+++=
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 123356777889999999999999999998874
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=75.64 E-value=8.3 Score=44.08 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=102.0
Q ss_pred HHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcch
Q 039884 244 LLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKE 323 (757)
Q Consensus 244 L~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 323 (757)
|-.|+|-+-.-|...|+++|..|..++--+. . +..+..-..-+|.....= -|.|++.=..| +....+....+....
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~~LL~iLWd~L~~L-DDLSASTgSVM-dLLAkL~s~p~~a~~ 372 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLDLVLEKCWKNIESE-ELISVSKTSNL-SLLTKIYRENPELSI 372 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHHHHHHHHHHHHHTC-CSCCTTHHHHH-HHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHHHHHHHHHHHhhhh-cccchhhHHHH-HHHHHHHcCCccccc
Confidence 6778888888999999999999999999997 3 345777788999998766 99999887665 444443332221111
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh-ccCChhHHHHHHHHH
Q 039884 324 SREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERL-RDKKISIRKKALLKL 388 (757)
Q Consensus 324 ~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~-rDKk~~VR~~A~~~L 388 (757)
-+++++.|-..+.-+=-.||.++++++..+. ...+++.+.+++ -|.+..||+.+.+..
T Consensus 373 dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 373 PPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1267788888899999999999999995543 678888888775 588899988887644
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=75.47 E-value=19 Score=41.67 Aligned_cols=68 Identities=28% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCC------CHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFV------PEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v------~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
+-+..|-..|-..|..||..+++.+..+.......+ .+.-+..+.+.+.|++-.||.+|+-.|+.+=+
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 345667778889999999999999988886655422 33455677788999999999999999998876
No 100
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.26 E-value=1.6e+02 Score=36.04 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhccCCC----CHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHH
Q 039884 322 KESREILAALESRLL-DFDDRVRTEAVIVACDLARSHLKFV----PEKLISEATERLRDKK-ISIRKKALLKLLEVYR 393 (757)
Q Consensus 322 ~~~~ei~~~L~~rL~-D~DekVR~aaV~~i~~l~~~~~~~v----~~~ll~~l~eR~rDKk-~~VR~~A~~~L~~lY~ 393 (757)
+...++++.+..-.. ++.+ +|.++...+.-+...++-.+ ...+++.|...+.|.. .+||+.|..+|+-+-+
T Consensus 797 ~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~ 873 (997)
T 1vsy_5 797 NHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH 873 (997)
T ss_dssp HHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 345568888877666 6788 99999888766665544222 2478899999999999 9999999999998754
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=72.36 E-value=1.7e+02 Score=34.99 Aligned_cols=108 Identities=7% Similarity=0.036 Sum_probs=58.4
Q ss_pred hHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCc--hhhhcHHHHHHHHhh----cc-------CCCHhHHHHHHH
Q 039884 243 MLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNC--LADRYPELFVEFLKR----FS-------DKSAEVRLNALR 309 (757)
Q Consensus 243 lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~--~~~~~~~~w~~fL~R----~~-------D~s~~VR~~~v~ 309 (757)
.+-.++|++..-+.+... .-+..++|.+...-+.+ ....-...+..|..+ ++ |-.|++|..+..
T Consensus 731 ~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ 807 (971)
T 2x1g_F 731 MLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFG 807 (971)
T ss_dssp HHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHH
Confidence 456666777666666443 34778888887654432 111122233332222 22 237899999999
Q ss_pred HhHHHHhcCCCc----ch-HHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 039884 310 CAKACYLGGPFR----KE-SREILAALESRLLDFDDRVRTEAVIVACDL 353 (757)
Q Consensus 310 ~~~~il~~~~~~----~~-~~ei~~~L~~rL~D~DekVR~aaV~~i~~l 353 (757)
....++.++|.. .. ...++......+.=.+..+-.+|+..+.++
T Consensus 808 ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~ 856 (971)
T 2x1g_F 808 CLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHF 856 (971)
T ss_dssp HHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 988888887742 11 345555555555433333455666655443
No 102
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=69.18 E-value=1.7e+02 Score=36.64 Aligned_cols=123 Identities=9% Similarity=0.075 Sum_probs=93.9
Q ss_pred HHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHH
Q 039884 229 YHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNAL 308 (757)
Q Consensus 229 ~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v 308 (757)
-..|+.++++..+..-..++-|+-+.+.......=..-+.+|+.|....+. ....+. --.+++.=+.....++-...+
T Consensus 422 G~~IL~~~Fk~h~~~r~~Iieqi~~RIv~~~~~~~s~~idlLs~lv~~~p~-~l~e~s-kl~e~~dyl~~lp~~~a~~Ll 499 (1308)
T 3s51_A 422 GANILLETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPL-ILQNCS-KVTETFDYLTFLPLQTVQGLL 499 (1308)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHCHH-HHSSCH-HHHGGGGGTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhccH-HHHhhh-HHHHHHHHHhcCCHHHHHHHH
Confidence 445788888888888877777777776544221114467788887765432 345555 558888888888999999999
Q ss_pred HHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 039884 309 RCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 309 ~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~ 355 (757)
.+.-.++...+ +...-++.-|++-+.-.++..|..||..|+.+-+
T Consensus 500 ~al~PLik~s~--~lrD~lIlvLRKamf~re~~~R~~AV~GfL~lLk 544 (1308)
T 3s51_A 500 KAVQPLLKISM--SMRDSLILVLRKAMFASQLDARKSAVAGFLLLLK 544 (1308)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhcCH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999887666 4566889999999999999999999999998874
No 103
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=67.52 E-value=61 Score=32.79 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=68.5
Q ss_pred HHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHH-hhcCCChhHHHHHHHHHHHhhh-hccCCCCHHHH
Q 039884 289 FVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALES-RLLDFDDRVRTEAVIVACDLAR-SHLKFVPEKLI 366 (757)
Q Consensus 289 w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~-rL~D~DekVR~aaV~~i~~l~~-~~~~~v~~~ll 366 (757)
..-+..=.+|.+-+||+..+...... .+ . .+++..++. ---|...+||..+.+++.++.. ..++ .++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~---~~--~--~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~l 141 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL---SK--D--KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KAL 141 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT---TT--S--HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TTH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc---cC--c--HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HHH
Confidence 33444445677789999888754433 22 2 478888887 6779999999999999988875 5543 467
Q ss_pred HHHHHHhccCChhHHHHHHHHHH
Q 039884 367 SEATERLRDKKISIRKKALLKLL 389 (757)
Q Consensus 367 ~~l~eR~rDKk~~VR~~A~~~L~ 389 (757)
..+.+-++|.+.-||+.|+.++-
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHhhH
Confidence 77888899999999999999975
No 104
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=66.89 E-value=59 Score=37.28 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=97.3
Q ss_pred hHHhhhhhhc-CCChHHHHHHHHHHHHHhcCCCC--ch---hhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC
Q 039884 247 VIPNLIQELL-VDQVDVRIKAVNLIGKICAQPDN--CL---ADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF 320 (757)
Q Consensus 247 ViP~l~~eL~-sd~~~~R~~At~llG~mfs~~~~--~~---~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 320 (757)
++|.|-.-|. +.++.++..|+..|..+-+.... .. +-..........+=....+..|+...+.....+- .++.
T Consensus 309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs-~~~~ 387 (584)
T 3l6x_A 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA-VDAR 387 (584)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH-TTCS
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-CChh
Confidence 3444444553 67899999999999999543211 01 1112233444455556667888888877777644 3443
Q ss_pred c--chHHHHHHHHHHhhcCC--------ChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhccC--ChhHHHHH
Q 039884 321 R--KESREILAALESRLLDF--------DDRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRDK--KISIRKKA 384 (757)
Q Consensus 321 ~--~~~~ei~~~L~~rL~D~--------DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rDK--k~~VR~~A 384 (757)
. ......+..|...|.++ .+.|+..||.++..+...+. ..+....+..+.+.++++ ...+++.|
T Consensus 388 ~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHH
Confidence 2 22335567777777776 36788999999987754332 234556788888888887 89999999
Q ss_pred HHHHHHHHH
Q 039884 385 LLKLLEVYR 393 (757)
Q Consensus 385 ~~~L~~lY~ 393 (757)
...|+.+|.
T Consensus 468 a~vL~nl~~ 476 (584)
T 3l6x_A 468 ALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999996
No 105
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=64.63 E-value=58 Score=35.58 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=69.6
Q ss_pred HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC-CCCc--hh-hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC
Q 039884 245 LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ-PDNC--LA-DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF 320 (757)
Q Consensus 245 ~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~-~~~~--~~-~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 320 (757)
.+++|.|-.-|.+++..++..|+..|+.+.+. ++.. ++ .---+..-.+|++. .++++|...+.....+-.. ++
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~--~~~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC--CCHHHHHHHHHHHHHHHTS-SS
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC--CCHHHHHHHHHHHHHHhcC-HH
Confidence 35889999999999999999999999999764 2110 10 11123444555543 4578888877666665543 43
Q ss_pred cc--hHHHHHHHHHHhhc--------C--------CChhHHHHHHHHHHHhhh
Q 039884 321 RK--ESREILAALESRLL--------D--------FDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 321 ~~--~~~ei~~~L~~rL~--------D--------~DekVR~aaV~~i~~l~~ 355 (757)
.. .....++.|.+.|. + .|+.|+..|+.++..++.
T Consensus 120 ~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 21 11245666666662 2 356777799999988874
No 106
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=63.29 E-value=2.6e+02 Score=33.86 Aligned_cols=130 Identities=9% Similarity=0.022 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHhhcCchhHHh-----hHHhhhhhhc---CCChHHHHHHHHHHHHHhcCCCCc-------hhhhcHHH
Q 039884 224 DLKEFYHEIIFKIFQCSPQMLLA-----VIPNLIQELL---VDQVDVRIKAVNLIGKICAQPDNC-------LADRYPEL 288 (757)
Q Consensus 224 ~l~~~~~eli~el~~~~P~lL~~-----ViP~l~~eL~---sd~~~~R~~At~llG~mfs~~~~~-------~~~~~~~~ 288 (757)
++++....++.-+....|++... +.|.+...+. +.+=..+-.|.-.+|-+ |..=.+ ....-|.+
T Consensus 413 e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~i-aE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 413 EMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIF-GEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT-TTTCCSGGGTBCSSSCCBCHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH-HhhccccccccCcccchhHHH
Confidence 34455566777777788998777 4445555553 33455566666666654 432111 01223445
Q ss_pred HHHHHhhc------cCCCHhHHHHHHHHhHHH---HhcCCCcchHHHHHHHHHH--hhcCCChhHHHHHHHHHHHhhhhc
Q 039884 289 FVEFLKRF------SDKSAEVRLNALRCAKAC---YLGGPFRKESREILAALES--RLLDFDDRVRTEAVIVACDLARSH 357 (757)
Q Consensus 289 w~~fL~R~------~D~s~~VR~~~v~~~~~i---l~~~~~~~~~~ei~~~L~~--rL~D~DekVR~aaV~~i~~l~~~~ 357 (757)
. .++.+. +|..|.||..+.+.+..+ +..|| +....+++++.. .++|++.+||.+|+.++..+.+..
T Consensus 492 ~-~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 492 S-QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp H-HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 4 666554 388999999877666543 34566 345678899999 999999999999999998876543
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=60.89 E-value=14 Score=42.34 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=96.3
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC
Q 039884 43 LLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID 122 (757)
Q Consensus 43 lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~ 122 (757)
-|...|.|||+..|-+|..|. ..+++..+...+-++|..+.|- ++.=..-.-||..|-.... ..-.+
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDDL-SASTgSVMdLLAkL~s~p~---~a~~d 373 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEELI-SVSKTSNLSLLTKIYRENP---ELSIP 373 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCSC-CTTHHHHHHHHHHHHHHCT---TCCCC
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhccc-chhhHHHHHHHHHHHcCCc---ccccC
Confidence 356679999999999998887 3367899999999999999664 4445555666666655542 11111
Q ss_pred chHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhh
Q 039884 123 CNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEK 202 (757)
Q Consensus 123 ~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~ 202 (757)
. .++..||--|-..+ .+|...++..+..++ ..+++..|+.+++=+.. .....++.++-++-.+-
T Consensus 374 p-~LVPRL~PFLRHtI--------TSVR~AVL~TL~tfL----~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~L 437 (800)
T 3oc3_A 374 P-ERLKDIFPCFTSPV--------PEVRTSILNMVKNLS----EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDL 437 (800)
T ss_dssp S-GGGGGTGGGGTCSS--------HHHHHHHHHHTTTCC----CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCC
T ss_pred h-HHHHHHHhhhcCCc--------HHHHHHHHHHHHHHH----hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHH
Confidence 2 56667765444433 378888888777665 56789999999765444 35667777777522223
Q ss_pred hhHHHHHHhhhh
Q 039884 203 LEPFVCGFLTSC 214 (757)
Q Consensus 203 l~~~i~~~~~~~ 214 (757)
+++-++.+.+-+
T Consensus 438 l~~wi~L~MtPI 449 (800)
T 3oc3_A 438 PKNLILHFMNVI 449 (800)
T ss_dssp CHHHHHHHHHHT
T ss_pred HHHHHHHhcCcC
Confidence 777777666543
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=59.46 E-value=13 Score=43.44 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=52.5
Q ss_pred hhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh-ccCCCHhHHHHHHHHhHHHHh
Q 039884 246 AVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKR-FSDKSAEVRLNALRCAKACYL 316 (757)
Q Consensus 246 ~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R-~~D~s~~VR~~~v~~~~~il~ 316 (757)
.++|.|+ .|++.+...|..|...|+.+...+...-.-.+..+-..-+.+ ..|.+.+||.+.......+-.
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4677776 499999999999999999998654322234555666666665 899999999988766665443
No 109
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=58.06 E-value=1.1e+02 Score=36.54 Aligned_cols=168 Identities=10% Similarity=0.109 Sum_probs=84.0
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC----chHHHHHHHHHHHHhhhcCCC-cchh
Q 039884 73 EDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID----CNDLVLQMFNNFFSVVRLCSE-PHLS 147 (757)
Q Consensus 73 ~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~----~~~li~~lF~~ff~~v~~~~~-~~~~ 147 (757)
|++|+.-||.-+.+.|. ++...+.|. + -.+.||-++--+ ..+-+..||+.+-.-..+++. .+..
T Consensus 226 t~~q~~~iFt~~lr~l~--~~~~~~~~~-------~--~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~ 294 (799)
T 1vsy_4 226 TDDQMTFMFNRLQGHLR--TDGQIHSYS-------R--TVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTK 294 (799)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCCCSSHH-------H--HHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHH
T ss_pred cHHHHHHHHHHHHHhcc--CcCCccchH-------H--HHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHH
Confidence 78999999999999998 443333222 2 234455544322 224455555433333322212 2233
Q ss_pred hHHHHHHHHHHHHhhcCCChhHHHHHHHHhhcccc---CCcchHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccc
Q 039884 148 SLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEK---DSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGD 224 (757)
Q Consensus 148 ~v~~~m~~Il~~vI~E~~~~~lld~Il~~l~~~~~---~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 224 (757)
.+..++ ..++.+ ....+..+.. ...|..+++..+.+..-.+.+.|.+-. + -=+.+..
T Consensus 295 ~L~~Fl----~~L~~~---------f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~---g----~fSK~~~ 354 (799)
T 1vsy_4 295 PNAKFV----HAFIKS---------YHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISL---G----SQNKNPD 354 (799)
T ss_dssp HHHHHH----HHHHHH---------HHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHH---H----HTCSSHH
T ss_pred HHHHHH----HHHHHH---------HHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHH---H----hCcCCcc
Confidence 332222 222211 1112221111 112444445444444444444444311 1 1123345
Q ss_pred hHHHHHHHHHHHhhcCc---hhHHh-hHHhhhhhhcC--CChHHHHHH-HHHHH
Q 039884 225 LKEFYHEIIFKIFQCSP---QMLLA-VIPNLIQELLV--DQVDVRIKA-VNLIG 271 (757)
Q Consensus 225 l~~~~~eli~el~~~~P---~lL~~-ViP~l~~eL~s--d~~~~R~~A-t~llG 271 (757)
+...+...+..|.-..| +++.+ |+--++.-|.+ -.+.-|+.+ .+.+.
T Consensus 355 ~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 355 IANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 56778889999999999 88775 66777777777 444545543 34433
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=53.10 E-value=65 Score=39.57 Aligned_cols=136 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcC----CCC---chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhH
Q 039884 240 SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQ----PDN---CLADRYPELFVEFLKRFSDKSAEVRLNALRCAK 312 (757)
Q Consensus 240 ~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~----~~~---~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~ 312 (757)
.|+++..+.+.++..-...+..+|..|.-.+|.|... .+. .......+....-+ ...+.+-++.+++...
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~---~~~~~~~~~~~LkaLG 465 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSS---DRAKEEEIVLALKALG 465 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH---hcCChHHHHHHHHHhh
Confidence 3445555555555444456778888888888887642 111 22333333333333 3445777788888877
Q ss_pred HHHhcCCCcchHHHHHHHHHHhhc-------CCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc--CChhHHHH
Q 039884 313 ACYLGGPFRKESREILAALESRLL-------DFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRD--KKISIRKK 383 (757)
Q Consensus 313 ~il~~~~~~~~~~ei~~~L~~rL~-------D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rD--Kk~~VR~~ 383 (757)
++- +| +.++.|.+.+- +...+||.+||.++..+++.. |..+...+.....| -.+.||-.
T Consensus 466 N~g--~p------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~----p~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 466 NAG--QP------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----PRKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp HHT--CG------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----HHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred ccC--Ch------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc----hHHHHHHHHHHhcCCCCChHHHHH
Confidence 744 34 23455555543 224579999999998887654 34455555555544 45899999
Q ss_pred HHHHHHH
Q 039884 384 ALLKLLE 390 (757)
Q Consensus 384 A~~~L~~ 390 (757)
|...|.+
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 111
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.85 E-value=44 Score=31.96 Aligned_cols=105 Identities=9% Similarity=0.078 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCC---CHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--
Q 039884 287 ELFVEFLKRFSDK---SAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL-- 358 (757)
Q Consensus 287 ~~w~~fL~R~~D~---s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~-- 358 (757)
+.+..++.|..|- ++..-. .++.|- .+.+.+. ...+.+.+|.+|+...+.+|.+.|...+..+.+. .|
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~-ileicD-~I~~~~~--~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEY-IIGFCD-QINKELE--GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHH-HHHHHH-HHHHSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHH-HHHHHH-HHHcCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4567888888774 333322 223343 4444553 4678999999999999999999999988777642 33
Q ss_pred CCCCHHHHHHHHHHhccC------ChhHHHHHHHHHHHHHHHHH
Q 039884 359 KFVPEKLISEATERLRDK------KISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 359 ~~v~~~ll~~l~eR~rDK------k~~VR~~A~~~L~~lY~~~~ 396 (757)
.+.+.+.+..+..++..| ...||+.++..+-. |...+
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~-W~~~f 130 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS-WTMAL 130 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH-HHHHC
T ss_pred HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH-HHHHc
Confidence 467889999998888754 47899998876655 44443
No 112
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=46.60 E-value=74 Score=29.69 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=70.1
Q ss_pred HHHHHHHhhccCCCH---hHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh---h--cc
Q 039884 287 ELFVEFLKRFSDKSA---EVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR---S--HL 358 (757)
Q Consensus 287 ~~w~~fL~R~~D~s~---~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~---~--~~ 358 (757)
+.+..++.|..|-+- ..= ..++.|- .+...+ .-..+.+.+|.+|+...+++|=+.|...+..+.+ . ..
T Consensus 10 ~~~~~~IekATs~~l~~~dw~-~ileicD-~I~~~~--~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 10 ETLEARINRATNPLNKELDWA-SINGFCE-QLNEDF--EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCHHHHHHHHSCTTCSSCCHH-HHHHHHH-HGGGSS--SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHH-HHHHHHH-HHHCCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 346667777766432 111 1223343 344455 3467899999999999999999999988876653 2 23
Q ss_pred CCCCHHHHHHHHHHhccC------ChhHHHHHHHHHHHHH
Q 039884 359 KFVPEKLISEATERLRDK------KISIRKKALLKLLEVY 392 (757)
Q Consensus 359 ~~v~~~ll~~l~eR~rDK------k~~VR~~A~~~L~~lY 392 (757)
...+.+.+..+..++.+| ...||...+..+-.-.
T Consensus 86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999888876 4679988877665433
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=45.75 E-value=57 Score=32.03 Aligned_cols=107 Identities=16% Similarity=0.283 Sum_probs=70.5
Q ss_pred HHHHHHHHhhchhhhhHHHHHHhhhh---ccCCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHH
Q 039884 189 SQLAVSVIRNCAEKLEPFVCGFLTSC---FLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIK 265 (757)
Q Consensus 189 ~~lA~~vi~~~~~~l~~~i~~~~~~~---~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~ 265 (757)
-+++..++.|..=.++||+.+++..+ ++...-.++.+++++..++..|. ....+.....+-.
T Consensus 67 m~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~---------------~~~~~~y~~L~~R 131 (196)
T 4atg_A 67 IALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY---------------DTYSRSYKTLAPR 131 (196)
T ss_dssp HHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH---------------HHHTTTSTTHHHH
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH---------------HHhCccCchHHHH
Confidence 35778889999999999999988755 34332222245555554444433 3444555666777
Q ss_pred HHHHHHHHhcCCCCchhhhcHHHHH-HHHhhccCCCHhHHHHHHHHhHHHH
Q 039884 266 AVNLIGKICAQPDNCLADRYPELFV-EFLKRFSDKSAEVRLNALRCAKACY 315 (757)
Q Consensus 266 At~llG~mfs~~~~~~~~~~~~~w~-~fL~R~~D~s~~VR~~~v~~~~~il 315 (757)
.++++-+.|.+|..++.+.|..++. .-||. ..||.-.+-..+.++
T Consensus 132 I~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-----~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 132 VLKTLKGVWMDPNRSEDSQYGALYCLSILSK-----NVVNTVIREHAEEYK 177 (196)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-----HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-----HHHHHhhhcCHHHHH
Confidence 8888888888888888888888777 22332 567776666655544
No 114
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=45.60 E-value=1e+02 Score=29.08 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHhhccCC---CHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--CC
Q 039884 289 FVEFLKRFSDK---SAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL--KF 360 (757)
Q Consensus 289 w~~fL~R~~D~---s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~--~~ 360 (757)
+..++.|..|- ++..-.. ++.| ..+.+.+. ...+.+.+|.+||...+.+|.+.|...+..+.+. .| .+
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~-leic-D~I~~~~~--~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLI-MDIC-DKVGSTPN--GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHH-HHHH-HHHHHSSS--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHH-HHHH-HHHhCCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55777777773 2333222 2333 34555553 4678999999999999999999999888776642 23 45
Q ss_pred CCHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHHHHH
Q 039884 361 VPEKLISEATERLRDK-KISIRKKALLKLLEVYREYCK 397 (757)
Q Consensus 361 v~~~ll~~l~eR~rDK-k~~VR~~A~~~L~~lY~~~~~ 397 (757)
.+.+.+..+...+..| .+.||+.++. |-.-|...+.
T Consensus 92 as~~Fl~el~~l~~~~~~~~Vk~kil~-li~~W~~~f~ 128 (163)
T 1x5b_A 92 CSRDFATEVRAVIKNKAHPKVCEKLKS-LMVEWSEEFQ 128 (163)
T ss_dssp TSHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHTT
T ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHHHHhc
Confidence 6788888877666543 3689999887 4456666543
No 115
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=45.08 E-value=2.4e+02 Score=32.63 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=97.9
Q ss_pred HHHHhhcCchhHHh-hHHhhhhhhcCC--ChHHHHHHHHHHHHHhcCCCC-------------------chhhhcHHHHH
Q 039884 233 IFKIFQCSPQMLLA-VIPNLIQELLVD--QVDVRIKAVNLIGKICAQPDN-------------------CLADRYPELFV 290 (757)
Q Consensus 233 i~el~~~~P~lL~~-ViP~l~~eL~sd--~~~~R~~At~llG~mfs~~~~-------------------~~~~~~~~~w~ 290 (757)
+..+.+-.|..+.+ -+|.|-+-|+.| |++.=..+.+++-.+|...+. +...+.++...
T Consensus 46 Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~ 125 (651)
T 3grl_A 46 LKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVT 125 (651)
T ss_dssp HHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHH
T ss_pred HHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHH
Confidence 34444444444433 355555555543 444444456666555543210 12334566667
Q ss_pred HHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHH------HHHHHHhhcCCChhHHHHHHHHHHHhhhhccC---CC
Q 039884 291 EFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREI------LAALESRLLDFDDRVRTEAVIVACDLARSHLK---FV 361 (757)
Q Consensus 291 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei------~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~---~v 361 (757)
..++=....+..||.-.++....++.++|... ...| +..|...|.|..|.||-+++..++.+...+.+ .|
T Consensus 126 ~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~-Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklV 204 (651)
T 3grl_A 126 LLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQV-QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIV 204 (651)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHhcCcHHH-HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77777788899999999999999999888521 1122 46688899999999999999999999876542 11
Q ss_pred -----CHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 039884 362 -----PEKLISEATERLRDKKISIRKKALLKLLEVYR 393 (757)
Q Consensus 362 -----~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~ 393 (757)
=+.++..+.+...=+--.|=..|+..|..|-+
T Consensus 205 AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 205 AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 12333333332222233666777777776654
No 116
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=43.08 E-value=1.8e+02 Score=27.86 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARS 356 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~ 356 (757)
+++++...+=++..||.+++.++.+.+..
T Consensus 39 inslr~a~N~s~~eV~~av~~ail~~~~~ 67 (182)
T 3jui_A 39 INSLKYAYNISLKEVMQVLSHVVLEFPLQ 67 (182)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999887644
No 117
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=39.31 E-value=2.4e+02 Score=34.93 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=64.1
Q ss_pred hhHHhhHHhhhhhhcC-CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh--ccCCCHhHHHHHHHHhHHHHhcC
Q 039884 242 QMLLAVIPNLIQELLV-DQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKR--FSDKSAEVRLNALRCAKACYLGG 318 (757)
Q Consensus 242 ~lL~~ViP~l~~eL~s-d~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R--~~D~s~~VR~~~v~~~~~il~~~ 318 (757)
+++..+.-.|+.-+.. .+...|..|.+.|.+.-..| +.|....-- -...++.||.......++.+..+
T Consensus 8 ~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~ 78 (1204)
T 3a6p_A 8 ALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFR 78 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 4444444444444443 36778999999998864443 233322222 24567999998887777776542
Q ss_pred C---CcchHH----HHHHHHHHhhc---CCChhHHHHHHHHHHHhhhhcc
Q 039884 319 P---FRKESR----EILAALESRLL---DFDDRVRTEAVIVACDLARSHL 358 (757)
Q Consensus 319 ~---~~~~~~----ei~~~L~~rL~---D~DekVR~aaV~~i~~l~~~~~ 358 (757)
= +.+... .+++.+...-. |.+..||-..+.++..++...+
T Consensus 79 W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~ 128 (1204)
T 3a6p_A 79 WNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREW 128 (1204)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhC
Confidence 1 112222 33444433211 2568999999999999987654
No 118
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=39.27 E-value=1.2e+02 Score=27.75 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=57.8
Q ss_pred HHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhh---hcc--CCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 039884 314 CYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLAR---SHL--KFVPEKLISEATERLRDKKISIRKKALLKL 388 (757)
Q Consensus 314 il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~---~~~--~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L 388 (757)
.+.+.| .-..+.+.+|.+||...+.+|-+.|...+..+.+ ..| ...+.+.+..+...+..-.+.||+..+..+
T Consensus 32 ~I~~~~--~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li 109 (140)
T 3ldz_A 32 KVGQSR--TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALM 109 (140)
T ss_dssp HHTTST--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 344455 3467999999999999999999999887766653 222 356778887777666656788999988876
Q ss_pred HHHHHHHH
Q 039884 389 LEVYREYC 396 (757)
Q Consensus 389 ~~lY~~~~ 396 (757)
- -|...+
T Consensus 110 ~-~W~~~f 116 (140)
T 3ldz_A 110 V-EWTDEF 116 (140)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHh
Confidence 5 444443
No 119
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=37.78 E-value=89 Score=29.02 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=59.0
Q ss_pred HhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--CCCCHHHHHHHHHHhccC------ChhHHHH
Q 039884 315 YLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL--KFVPEKLISEATERLRDK------KISIRKK 383 (757)
Q Consensus 315 l~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~--~~v~~~ll~~l~eR~rDK------k~~VR~~ 383 (757)
+.+.+ ....+.+.+|.+|+...+++|-+.|...+..+.+. .| ...+.+.+..+..++.+| ...||+.
T Consensus 29 I~~~~--~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 29 VNTDP--NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHSS--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHcCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 34444 34678999999999999999999999888777642 23 467889999998888775 5689998
Q ss_pred HHHHHHHHHHHHH
Q 039884 384 ALLKLLEVYREYC 396 (757)
Q Consensus 384 A~~~L~~lY~~~~ 396 (757)
++..+- -|...+
T Consensus 107 il~li~-~W~~~f 118 (148)
T 1mhq_A 107 VIEILF-SWTVWF 118 (148)
T ss_dssp HHHHHH-HHHHHC
T ss_pred HHHHHH-HHHHHc
Confidence 776554 454443
No 120
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=37.44 E-value=2.4e+02 Score=32.17 Aligned_cols=108 Identities=9% Similarity=0.015 Sum_probs=74.7
Q ss_pred HhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCC--------CHhHHHHHHHHhHHHHh
Q 039884 245 LAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDK--------SAEVRLNALRCAKACYL 316 (757)
Q Consensus 245 ~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~--------s~~VR~~~v~~~~~il~ 316 (757)
...+|.|-.-|.+++..++..|+..|+.|-..+... ..--......+.....+- +.+++...+.....+..
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999999996554321 111123445555444432 56777776666666665
Q ss_pred cCCCcchHH-----HHHHHHHHhhcCC--ChhHHHHHHHHHHHhhh
Q 039884 317 GGPFRKESR-----EILAALESRLLDF--DDRVRTEAVIVACDLAR 355 (757)
Q Consensus 317 ~~~~~~~~~-----ei~~~L~~rL~D~--DekVR~aaV~~i~~l~~ 355 (757)
.++. ... ..++.|...|.+. .++++.+|..+++.+..
T Consensus 433 ~~~~--~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 433 ENLE--AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TCHH--HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCHH--HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 5553 122 2366777777775 89999999999998874
No 121
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=37.16 E-value=5.8e+02 Score=30.06 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhh-cCchhHHhhHHhhhhhhcCCCh--------HHHHHHHHHHHHHhcCCC----CchhhhcHHHHHHHH
Q 039884 227 EFYHEIIFKIFQ-CSPQMLLAVIPNLIQELLVDQV--------DVRIKAVNLIGKICAQPD----NCLADRYPELFVEFL 293 (757)
Q Consensus 227 ~~~~eli~el~~-~~P~lL~~ViP~l~~eL~sd~~--------~~R~~At~llG~mfs~~~----~~~~~~~~~~w~~fL 293 (757)
..+++|+..+.+ ..|+-+.+++-.+......++. ......++++-.+ |+.. .+..+.|.++++.+.
T Consensus 480 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~-GskS~SH~~~~lery~~~lk~l~ 558 (771)
T 1h2v_C 480 SVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHL-AAKSFSHSFSALAKFHEVFKTLA 558 (771)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHH-STTCHHHHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHc
Confidence 345556555544 4555555555554434433221 2333445555555 4432 234588999998877
Q ss_pred hhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHH-HHHHHhhcCCCh
Q 039884 294 KRFSDKSAEVRLNALRCAKACYLGGPFRKESREIL-AALESRLLDFDD 340 (757)
Q Consensus 294 ~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~-~~L~~rL~D~De 340 (757)
+ +.+=|..+++....++.+||. ..--++ +.+.-+++++-.
T Consensus 559 ~-----~~~~q~~il~~v~~~W~~~~q--~~~ividkll~~~iv~p~~ 599 (771)
T 1h2v_C 559 E-----SDEGKLHVLRVMFEVWRNHPQ--MIAVLVDKMIRTQIVDCAA 599 (771)
T ss_dssp S-----SHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTTSSCHHH
T ss_pred C-----CHHHHHHHHHHHHHHHhcCCc--eEehHHHHHHhcCCCCHHH
Confidence 6 466699999999999999883 222333 444446666543
No 122
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=36.37 E-value=28 Score=40.49 Aligned_cols=65 Identities=26% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccC----CCCHHHHHH-HHHHhccCChhHHHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLK----FVPEKLISE-ATERLRDKKISIRKKALLKLLEVY 392 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~----~v~~~ll~~-l~eR~rDKk~~VR~~A~~~L~~lY 392 (757)
+|.+.| ++|..+|.++|..||.+++.++. +.+ ...+.++.. +..++-|....||.+|.-.|.+|=
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 455555 45899999999999999999874 221 233345554 456688999999999999888774
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=32.40 E-value=6.8e+02 Score=30.90 Aligned_cols=170 Identities=9% Similarity=0.093 Sum_probs=84.9
Q ss_pred cchHHHHHHHHHhhch----hhhh----HHHHHHhhhhccCCC----ccccchHHHHHHHHHHHhhcC-chhHHhhHHhh
Q 039884 185 PYAASQLAVSVIRNCA----EKLE----PFVCGFLTSCFLDRD----AVEGDLKEFYHEIIFKIFQCS-PQMLLAVIPNL 251 (757)
Q Consensus 185 ~~~a~~lA~~vi~~~~----~~l~----~~i~~~~~~~~~~~~----~~~~~l~~~~~eli~el~~~~-P~lL~~ViP~l 251 (757)
++..+..|..++++.. ..+. ..|++++-+.+.... ..+..++.+.-.+|-+|.+.. |+-=-+++|.|
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L 139 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIEL 139 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3455555554444432 2233 355555544433221 123445556666666665542 33333344444
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhcC---CCC-----------chhhhcHHHHHHHHhhcc-------------------C
Q 039884 252 IQELLVDQVDVRIKAVNLIGKICAQ---PDN-----------CLADRYPELFVEFLKRFS-------------------D 298 (757)
Q Consensus 252 ~~eL~sd~~~~R~~At~llG~mfs~---~~~-----------~~~~~~~~~w~~fL~R~~-------------------D 298 (757)
-.-+.+ +...+..+..+|+.+... .+. .+....|.++..|..=.+ .
T Consensus 140 ~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~ 218 (1204)
T 3a6p_A 140 DTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQ 218 (1204)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 444444 455677777777776321 110 011222344333322111 1
Q ss_pred CCHhHHHHHHHHhHHHHhcCCCcchH---HHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q 039884 299 KSAEVRLNALRCAKACYLGGPFRKES---REILAALESRLLDFDDRVRTEAVIVACDLARSH 357 (757)
Q Consensus 299 ~s~~VR~~~v~~~~~il~~~~~~~~~---~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~ 357 (757)
.++.++...+++...++.--|-.... ..++..+...+. ++.+|.+|+.+++++....
T Consensus 219 ~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 219 ANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 23456666667665554322311111 136777776555 5789999999999998543
No 124
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=31.87 E-value=4e+02 Score=27.94 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred hhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCC---------cchHHHHHHHHHHhh---cCCChhHHHHHHH
Q 039884 281 LADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPF---------RKESREILAALESRL---LDFDDRVRTEAVI 348 (757)
Q Consensus 281 ~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~---------~~~~~ei~~~L~~rL---~D~DekVR~aaV~ 348 (757)
+++...++..+.+ --....+++|........++|.|||. ......+.+.|..-. .+..+.+...-+-
T Consensus 65 I~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~Ls 143 (315)
T 3qml_C 65 IITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLS 143 (315)
T ss_dssp HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHH
T ss_pred HHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 3332344555544 11224567999999999999999993 122223333333321 1145567777777
Q ss_pred HHHHhhhhc--cCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 349 VACDLARSH--LKFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 349 ~i~~l~~~~--~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
+|..+.... |..-..+.|..+.+.. .+-+.++..+++.++.+|..
T Consensus 144 II~~L~~~~~~F~~~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~~ 190 (315)
T 3qml_C 144 ILNELPVTSEDLPIYSTVVLQNVYERN-NKDKQLQIKVLELISKILKA 190 (315)
T ss_dssp HHHHSCCCSTTC--CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHhhhhccHHHHHHHHccC-CCCHHHHHHHHHHHHHHccc
Confidence 777777543 3333446666666654 55677888888888888874
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.06 E-value=2.2e+02 Score=28.13 Aligned_cols=102 Identities=15% Similarity=0.226 Sum_probs=65.8
Q ss_pred HHHHHHhhccCCCH-hHHHH-HHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-----ccCC
Q 039884 288 LFVEFLKRFSDKSA-EVRLN-ALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARS-----HLKF 360 (757)
Q Consensus 288 ~w~~fL~R~~D~s~-~VR~~-~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~-----~~~~ 360 (757)
.|..++.|..|-.- +-=.. .++.+ .++...+. -..+.+.+|.+||...+++|-+.|+..+..+.+. ...+
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileic-D~I~~~~~--~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei 84 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQIC-DLIRQGDT--QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV 84 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHH-HHHHTTSS--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHH-HHHhCCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 56677777776542 11111 22333 33444443 3679999999999999999999999888776632 2245
Q ss_pred CCHHHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 039884 361 VPEKLISEATERLRDK-KISIRKKALLKLLEVY 392 (757)
Q Consensus 361 v~~~ll~~l~eR~rDK-k~~VR~~A~~~L~~lY 392 (757)
.+.+.+..+...+..+ ...||+.++..+-.-.
T Consensus 85 as~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 85 ANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp SSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 6777777665554332 4679988877664433
No 126
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=30.48 E-value=82 Score=37.33 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCchhHHh----hHHhhhhhhcCCChHHHHHHHHHHHHHhc
Q 039884 226 KEFYHEIIFKIFQCSPQMLLA----VIPNLIQELLVDQVDVRIKAVNLIGKICA 275 (757)
Q Consensus 226 ~~~~~eli~el~~~~P~lL~~----ViP~l~~eL~sd~~~~R~~At~llG~mfs 275 (757)
..+|+-++.++.+..|..+.. .+-.+...+..=|...+..-+..++-.+|
T Consensus 350 ~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLS 403 (771)
T 1h2v_C 350 DVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLS 403 (771)
T ss_dssp HHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh
Confidence 468999999999999875554 45556666666666665555555555554
No 127
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.97 E-value=1.9e+02 Score=26.97 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=68.3
Q ss_pred HHHHHHHhhccCCC---HhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHHHhhhh---cc-
Q 039884 287 ELFVEFLKRFSDKS---AEVRLNALRCAKACYLGGPFRKESREILAALESRLL-DFDDRVRTEAVIVACDLARS---HL- 358 (757)
Q Consensus 287 ~~w~~fL~R~~D~s---~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~-D~DekVR~aaV~~i~~l~~~---~~- 358 (757)
+-+..++.|..|-+ +..-. .++.|- .+.+.+ ....+.+.+|.+|+. ..+.+|.+.|...+..+.+. .|
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~-~leicD-~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh 90 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWAL-NMEICD-IINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFH 90 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHH-HHHHHH-HHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHH-HHHHHH-HHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 45677888877733 22222 123333 344444 346799999999997 68999999999888776642 23
Q ss_pred -CCCCHHHHHH-HHHHhccCC---hhHHHHHHHHHHHHHHHHH
Q 039884 359 -KFVPEKLISE-ATERLRDKK---ISIRKKALLKLLEVYREYC 396 (757)
Q Consensus 359 -~~v~~~ll~~-l~eR~rDKk---~~VR~~A~~~L~~lY~~~~ 396 (757)
...+.+.+.. +...+.+|. ..||+.++..+ .-|...+
T Consensus 91 ~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li-~~W~~~f 132 (157)
T 1elk_A 91 VLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLI-QSWADAF 132 (157)
T ss_dssp HHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHH-HHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HHHHHHc
Confidence 3668888888 566664443 47988777554 4465554
No 128
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.45 E-value=5.1e+02 Score=26.79 Aligned_cols=157 Identities=16% Similarity=0.076 Sum_probs=82.8
Q ss_pred HHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHh--hhcCchhhhhhhhchhHHHHhhhcc
Q 039884 346 AVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKK--CCEGQMTVCDHFEQIPCKILMLCYD 423 (757)
Q Consensus 346 aV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~--~~~~~~~~~~~~~wIP~~il~~~y~ 423 (757)
|+.++.++.... ....+.+.+..-.-|||..-|+.+...|+.+|....+. ...| ....++.+|+-.+..--.
T Consensus 22 a~~~l~el~~p~---~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~g---f~~ll~~ldDl~lD~P~a 95 (307)
T 2zu6_B 22 VAEMLRDLNLGE---MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKS---FDKLLKDLPELALDTPRA 95 (307)
T ss_dssp HHHHHHTTCCGG---GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHH---HHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHhCCcc---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHhhhHhcccccch
Confidence 444555543222 34567777778889999999999999999999643321 1111 222334444444432211
Q ss_pred cccccchhhhHHHHHHhccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhh---h---C
Q 039884 424 KDYKEFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKE---K---G 496 (757)
Q Consensus 424 ~d~~~~r~~~ve~~l~e~LlP~-~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~~~~~~~~~~l~~~~~~---~---~ 496 (757)
.+ +--..+.|.+.+.++|. +=.+.. . ...++.+.+++..-- .++...... . |
T Consensus 96 ~~---~la~flaraV~d~~l~~~~l~~~~-~------~~~~~~g~~~l~~a~-----------~~l~~~~~~~~~~~~WG 154 (307)
T 2zu6_B 96 PQ---LVGQFIARAVGDGILCNTYIDSYK-G------TVDCVQARAALDKAT-----------VLLSMSKGGKRKDSVWG 154 (307)
T ss_dssp HH---HHHHHHHHHHHTTSSCTTTTGGGT-T------TCCCHHHHHHHHHHH-----------HHHHTCC----CCCSSC
T ss_pred HH---HHHHHHHHHHHhCCCCHHHHHHHH-h------cccchHHHHHHHHHH-----------HHhcccccHhHHhhhcC
Confidence 11 11235788888899988 222211 0 123555554542211 223211100 0 1
Q ss_pred --C---CchHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Q 039884 497 --S---CHDETHEQMKNSFVKMSASFPDPSKAEGCFQRL 530 (757)
Q Consensus 497 --~---~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f 530 (757)
+ +.+++++++...+...-.+ .|...|..|++.+
T Consensus 155 ~~~~~~~~eelkkki~~lL~EY~~~-~D~~EA~~ci~EL 192 (307)
T 2zu6_B 155 SGGGQQSVNHLVKEIDMLLKEYLLS-GDISEAEHCLKEL 192 (307)
T ss_dssp CCSTTSCHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHc
Confidence 1 2456777777776655443 5666666666655
No 129
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.38 E-value=49 Score=27.35 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHhhhCC-CCCCCc---hhHHHHHHHHHHH
Q 039884 59 VSELFRILAP-EPPFED---NYLRGVFELIISL 87 (757)
Q Consensus 59 l~dIlRi~AP-daPy~d---~~LkdIF~l~i~~ 87 (757)
|..+||.++| ++||+. +||+....-.++.
T Consensus 28 Ih~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 28 IHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 5678999988 578976 8999888777754
No 130
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.97 E-value=4.5e+02 Score=26.31 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCC--Cchhhh---cHHHHHHHHhhccCC----CHhHHHHHHHHhHHHH
Q 039884 257 VDQVDVRIKAVNLIGKICAQPD--NCLADR---YPELFVEFLKRFSDK----SAEVRLNALRCAKACY 315 (757)
Q Consensus 257 sd~~~~R~~At~llG~mfs~~~--~~~~~~---~~~~w~~fL~R~~D~----s~~VR~~~v~~~~~il 315 (757)
+.+...|+.+.+++..||+.+. ..+... +.+++...++.+.|. +..+|++.....-++-
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~a 168 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYS 168 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHH
Confidence 4578899999999999999875 222332 233344444444554 5678887765554433
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=24.50 E-value=6.5e+02 Score=26.63 Aligned_cols=171 Identities=11% Similarity=0.128 Sum_probs=100.0
Q ss_pred CCCccccchHHHHHHHHHHHhhcCchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCC------CchhhhcHHHHH
Q 039884 217 DRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPD------NCLADRYPELFV 290 (757)
Q Consensus 217 ~~~~~~~~l~~~~~eli~el~~~~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~------~~~~~~~~~~w~ 290 (757)
.|++....-.+..+.+..|+++. + ++..|-.-|..=+-+.|..++..++.++.... .++..+||++..
T Consensus 55 ~G~~e~ep~~e~~~qL~~ei~~~--d----ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~ 128 (341)
T 1upk_A 55 YGTNEKEPQTEAVAQLAQELYNS--G----LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 128 (341)
T ss_dssp C-------CHHHHHHHHHHHHHH--S----HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHh--C----HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHH
Confidence 34433333345677788888765 2 22233334444455689999999999987642 235567899998
Q ss_pred HHHhhccCCCHhHHHH-----HH--HHhHHHHhc------------CCCcchHHH-------------------------
Q 039884 291 EFLKRFSDKSAEVRLN-----AL--RCAKACYLG------------GPFRKESRE------------------------- 326 (757)
Q Consensus 291 ~fL~R~~D~s~~VR~~-----~v--~~~~~il~~------------~~~~~~~~e------------------------- 326 (757)
..+.-..+.+...-.. |+ +....+++. .|.-+.+.+
T Consensus 129 ~L~~gYe~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd 208 (341)
T 1upk_A 129 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYD 208 (341)
T ss_dssp HHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHH
T ss_pred HHHHhhccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHH
Confidence 8888888766554332 11 111122221 222222222
Q ss_pred -HHHHHHHhhcCCChhHHHHHHHHHHHhhh--hcc----C-CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 039884 327 -ILAALESRLLDFDDRVRTEAVIVACDLAR--SHL----K-FVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCK 397 (757)
Q Consensus 327 -i~~~L~~rL~D~DekVR~aaV~~i~~l~~--~~~----~-~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~ 397 (757)
......+.|.-+.--.|.++++-++++-- .++ + .-+++-|+.+--.+|||...|+-||.. +|+.+..
T Consensus 209 ~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFh----VFKvFVA 283 (341)
T 1upk_A 209 RFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH----VFKVFVA 283 (341)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhh----heeeeee
Confidence 23334444555555778889999888863 233 2 236788888889999999999888874 4555443
No 132
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=24.47 E-value=1.8e+02 Score=28.96 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhcc-CChhHHHHHHHHHHHH
Q 039884 328 LAALESRLLDFDDRVRTEAVIVACDLARSHL----KFVPEKLISEATERLRD-KKISIRKKALLKLLEV 391 (757)
Q Consensus 328 ~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~----~~v~~~ll~~l~eR~rD-Kk~~VR~~A~~~L~~l 391 (757)
++.|-+.|...++.||..|+.++..++..+. ..+....+..+.+.++. +...+|+.|...|..+
T Consensus 54 Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 54 ILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 5777788888999999999999999986432 12223445556666663 6788998886554444
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=24.26 E-value=1.5e+02 Score=27.59 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHhhcCC--ChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHH--HHhhhhc---cC---CCccccchHHH
Q 039884 159 HIINEET--SLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVC--GFLTSCF---LD---RDAVEGDLKEF 228 (757)
Q Consensus 159 ~vI~E~~--~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~--~~~~~~~---~~---~~~~~~~l~~~ 228 (757)
.+|+... +.+.+..|-..|-.+++...--|-.+....+++|+..+...|+ .|++.+. .. ++.....++++
T Consensus 37 D~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 37 EQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4455533 3446777777776544332233555667788999999887764 3444432 11 12334456666
Q ss_pred HHHHHHHHhhcCchhHHhhHHhhhhhhcC
Q 039884 229 YHEIIFKIFQCSPQMLLAVIPNLIQELLV 257 (757)
Q Consensus 229 ~~eli~el~~~~P~lL~~ViP~l~~eL~s 257 (757)
.-++|.+....-|+.-. +...+.+|+.
T Consensus 117 il~li~~W~~~f~~~p~--i~~~Y~~Lk~ 143 (149)
T 3g2s_A 117 ILELLYSWTVGLPEEVK--IAEAYQMLKK 143 (149)
T ss_dssp HHHHHHHHHHHCTTCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCch--HHHHHHHHHH
Confidence 77777766554444211 4444444443
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.19 E-value=1.8e+02 Score=28.55 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---cc--CCCCHHHHHHHHHHhccC-ChhHHHHHHHH
Q 039884 314 CYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARS---HL--KFVPEKLISEATERLRDK-KISIRKKALLK 387 (757)
Q Consensus 314 il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~---~~--~~v~~~ll~~l~eR~rDK-k~~VR~~A~~~ 387 (757)
.+...+. ...+.+.+|.+||...+.+|-+.|...+..+... .| .+.+.+.+..+...+.++ ...||+.+++.
T Consensus 32 ~i~~~~~--~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~l 109 (220)
T 1dvp_A 32 EINQKDV--TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLEL 109 (220)
T ss_dssp HHHTTSS--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhcCCCc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444443 4779999999999999999999999888776632 23 467778888776665543 47888776654
Q ss_pred HHHHHHHHH
Q 039884 388 LLEVYREYC 396 (757)
Q Consensus 388 L~~lY~~~~ 396 (757)
.+-|...+
T Consensus 110 -i~~W~~~f 117 (220)
T 1dvp_A 110 -VQTWAYAF 117 (220)
T ss_dssp -HHHHHHHT
T ss_pred -HHHHHHHh
Confidence 44455544
No 135
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=22.17 E-value=8.1e+02 Score=26.93 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHh-----hHhHHHHHHHHHH
Q 039884 447 EVEESTRHWVHLFSLFTPL-HLKALNCVLSQK-----KRFRSEMRYYLSV 490 (757)
Q Consensus 447 ~~~~R~~~l~~l~~~ld~~-~~ka~~~i~~~k-----~~~~~~~~~~l~~ 490 (757)
+++.|+..+++.|..+|+. ++.+|..++..+ .+++.++..|..+
T Consensus 33 ~~e~~a~~i~~~Y~~l~~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~ 82 (460)
T 2ygw_A 33 PAEGQCADFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAEQSAGVLHL 82 (460)
T ss_dssp ---CHHHHHHHHHHTCCSHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4567899999999999999 999998888843 3555566666654
No 136
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=21.64 E-value=2.9e+02 Score=27.39 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=68.4
Q ss_pred hHHhhhhhhcCCCh--HHHHHHHHHHHHHhcCC-CC-chhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcc
Q 039884 247 VIPNLIQELLVDQV--DVRIKAVNLIGKICAQP-DN-CLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRK 322 (757)
Q Consensus 247 ViP~l~~eL~sd~~--~~R~~At~llG~mfs~~-~~-~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~ 322 (757)
.+|.+-.-|.++++ +++..|...+..+-... +. ..+.... .-..++.-....++.||...+.....+-..+++..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 46777788999988 88888988888875322 11 1111221 12344444445678999888777776554344211
Q ss_pred h-H--HHHHHHHHHhhcC-CChhHHHHHHHHHHHhhh
Q 039884 323 E-S--REILAALESRLLD-FDDRVRTEAVIVACDLAR 355 (757)
Q Consensus 323 ~-~--~ei~~~L~~rL~D-~DekVR~aaV~~i~~l~~ 355 (757)
. . ..-++.|-+-|.+ .++.||..|+.++..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 1 0 0135667777764 689999999999988864
No 137
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=21.50 E-value=7.4e+02 Score=26.19 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=86.4
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHh--------hHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchh-----hhcHH
Q 039884 221 VEGDLKEFYHEIIFKIFQCSPQMLLA--------VIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLA-----DRYPE 287 (757)
Q Consensus 221 ~~~~l~~~~~eli~el~~~~P~lL~~--------ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~-----~~~~~ 287 (757)
...++...+..-+.+|-...+.+... +......-|.++|=-+|..++++||+++..+ +|+. -..|+
T Consensus 176 ~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr-~N~~vM~~Yis~~~ 254 (341)
T 1upk_A 176 STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR-HNFTIMTKYISKPE 254 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTTCHH
T ss_pred CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCc-hHHHHHHHHhCCHH
Confidence 33455444444444444444433332 4455666688999999999999999999885 3332 34578
Q ss_pred HHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCc---------chHHHHHHHHHHhhcCC--ChhHHHH---HHHHHHHh
Q 039884 288 LFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFR---------KESREILAALESRLLDF--DDRVRTE---AVIVACDL 353 (757)
Q Consensus 288 ~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~---------~~~~ei~~~L~~rL~D~--DekVR~a---aV~~i~~l 353 (757)
-.+-.+.=..|+|..|+.+...--+ +.++||.. .-...+++.|.+-..|. ||.-.-+ .|+.|.++
T Consensus 255 nLkl~M~LL~d~sk~Iq~EAFhVFK-vFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 255 NLKLMMNLLRDKSRNIQFEAFHVFK-VFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHH-HHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCchhchhhhhhhhee-eeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 8888899999999999999866555 44567731 11335677777888887 4444444 66666555
Q ss_pred h
Q 039884 354 A 354 (757)
Q Consensus 354 ~ 354 (757)
.
T Consensus 334 ~ 334 (341)
T 1upk_A 334 K 334 (341)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.49 E-value=1.6e+02 Score=27.16 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHH
Q 039884 286 PELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKL 365 (757)
Q Consensus 286 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~l 365 (757)
..+..-.++|++|+++.|-.++++....++.+.+ . .+...+.+.. . .|.+ ...|+.+++.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~----~f~~~~r~~~---------~---~Ik~--l~~F~g~~dp- 107 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-S----EFRREMQRNS---------V---AVRN--LFHYKGHPDP- 107 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-H----HHHHHHHHTT---------H---HHHT--TTTCCCCCCT-
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-H----HHHHHHHHhH---------H---HHHH--HHhcCCCCCc-
Confidence 5677778888999988888888888876654332 1 2333333322 1 1111 2334444432
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884 366 ISEATERLRDKKISIRKKALLKLLEVYRE 394 (757)
Q Consensus 366 l~~l~eR~rDKk~~VR~~A~~~L~~lY~~ 394 (757)
-..+|....||..|=+.+.-||..
T Consensus 108 -----~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 108 -----LKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp -----TTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred -----ccccchhHHHHHHHHHHHHHHhCc
Confidence 133455577888888888887763
No 139
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=21.17 E-value=7.3e+02 Score=25.98 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH-----HhhHhHHHHHHHHHHHHhhhC
Q 039884 456 VHLFSLFTPLHLKALNCVLS-----QKKRFRSEMRYYLSVRKKEKG 496 (757)
Q Consensus 456 ~~l~~~ld~~~~ka~~~i~~-----~k~~~~~~~~~~l~~~~~~~~ 496 (757)
..+|++|++...+.+..-.. -+.+....+..|.+.+....+
T Consensus 28 a~vlk~L~~~ei~~l~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~ 73 (329)
T 3hjl_A 28 MNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGI 73 (329)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 35578888888887766665 233455688899988876543
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=20.06 E-value=6.1e+02 Score=24.70 Aligned_cols=59 Identities=7% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 039884 326 EILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLE 390 (757)
Q Consensus 326 ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~ 390 (757)
.+...+...+.|++.-||.++==++.++.+.+ |+.++..+.+. .=..-++++|++.|.+
T Consensus 166 ~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~----p~~v~~fl~~~--~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 166 LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN----PDVVWEYVQNN--ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC----HHHHHHHHHHS--CCCHHHHHHHTTTTHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHC--CCCHHHHHHHHHhccc
Confidence 45566667788999999999888888887665 44556666543 2235577777777653
Done!