BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039885
(674 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 34/201 (16%)
Query: 167 ISLVGMGGIGKTTLAQFVYNDNDVINHF--GKRIWVCVSDPFDEYRIAKAIIEALEGSAT 224
+++ GM G GK+ LA D+ ++ G WV V + ++ L+ T
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 204
Query: 225 NLVELNA----LLLRINESIAR---------EKFLLVLDDVWTEDYNKWESFRRCLINGQ 271
L + + L L I E+ R + LL+LDDVW + W L
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW-----VLKAFD 255
Query: 272 RGSKILVTTRKETVA-GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGR 330
+IL+TTR ++V +M V+ ++ +E E ++ F +++ L E
Sbjct: 256 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE--KGLEILSLF--VNMKKADLPEQAH 311
Query: 331 KIVSKCKGLPLAVKTIGSLLR 351
I+ +CKG PL V IG+LLR
Sbjct: 312 SIIKECKGSPLVVSLIGALLR 332
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 34/201 (16%)
Query: 167 ISLVGMGGIGKTTLAQFVYNDNDVINHF--GKRIWVCVSDPFDEYRIAKAIIEALEGSAT 224
+++ GM G GK+ LA D+ ++ G WV V + ++ L+ T
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 210
Query: 225 NLVELNA----LLLRINESIAR---------EKFLLVLDDVWTEDYNKWESFRRCLINGQ 271
L + + L L I E+ R + LL+LDDVW + W L
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW-----VLKAFD 261
Query: 272 RGSKILVTTRKETVA-GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGR 330
+IL+TTR ++V +M V+ ++ +E E ++ F +++ L E
Sbjct: 262 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE--KGLEILSLF--VNMKKADLPEQAH 317
Query: 331 KIVSKCKGLPLAVKTIGSLLR 351
I+ +CKG PL V IG+LLR
Sbjct: 318 SIIKECKGSPLVVSLIGALLR 338
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 38/203 (18%)
Query: 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNL 226
+++ GM G GK+ LA D+ ++ C S I K L NL
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 227 -VELNA-------LLLRINESIAR---------EKFLLVLDDVWTEDYNKWESFRRCLIN 269
+ L+ L L I E+ R + LL+LDDVW + W L
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW----DPW-----VLKA 253
Query: 270 GQRGSKILVTTRKETVA-GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
+IL+TTR ++V +M V+ ++ RE E ++ F +++ E L
Sbjct: 254 FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE--KGLEILSLF--VNMKKEDLPAE 309
Query: 329 GRKIVSKCKGLPLAVKTIGSLLR 351
I+ +CKG PL V IG+LLR
Sbjct: 310 AHSIIKECKGSPLVVSLIGALLR 332
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 42/205 (20%)
Query: 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNL 226
+++ GM G GK+ LA D+ ++ C S I K L NL
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 227 -VELNA-------LLLRINESIAR---------EKFLLVLDDVWTEDYNKW--ESF-RRC 266
+ L+ L L I E+ R + LL+LDDVW + W ++F +C
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW----DPWVLKAFDNQC 265
Query: 267 LINGQRGSKILVTTRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLE 326
I +L T+ K +M V+ ++ RE E ++ F +++ E L
Sbjct: 266 QI-------LLTTSDKSVTDSVMGPKHVVPVESGLGRE--KGLEILSLF--VNMKKEDLP 314
Query: 327 EFGRKIVSKCKGLPLAVKTIGSLLR 351
I+ +CKG PL V IG+LLR
Sbjct: 315 AEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|D Chain D, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|E Chain E, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|F Chain F, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 290
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 268 INGQRGSKILVTTRKETVAGMMESTDVISIKELSE---RECWSLFERIAFFNRPSLE 321
I R S I++T R + A E ++S K SE EC+++ ERIA F+RP +E
Sbjct: 180 IGTSRASDIMLTGR-DVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIE 235
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
(Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.75 A Resolution
Length = 451
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 199 WVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLL-RINESIAREKFLLV 248
+ V DP + R+ +I AL GSA L + N+ LL ++NE IA ++ L
Sbjct: 247 YTMVVDPMNSSRLLSPMISALNGSA--LQQKNSFLLNKLNEKIASDRLTLT 295
>pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate
5- Dehydrogenase From Beutenbergia Cavernae(Efi Target
Efi-502044) With Bound Nadp (Low Occupancy)
pdb|3UF0|B Chain B, Crystal Structure Of A Putative Nad(P) Dependent Gluconate
5- Dehydrogenase From Beutenbergia Cavernae(Efi Target
Efi-502044) With Bound Nadp (Low Occupancy)
Length = 273
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 574 FNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRH 633
NL + R + L HG GR+V + + F G RN + K V+G R
Sbjct: 136 VNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSF----QGGRNVAAYAASKHAVVGLTRA 191
Query: 634 LRGSLRIRGLG 644
L RG+G
Sbjct: 192 LASEWAGRGVG 202
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 344 KTIGSLLRFKRSLRVWQSILDSQMWQLEE--FERDYRMDKDELIKLWLAQ 391
K++ ++ RF++ R+W +L+S + + E E D RM D ++KL L +
Sbjct: 141 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQK 190
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 344 KTIGSLLRFKRSLRVWQSILDSQMWQLEE--FERDYRMDKDELIKLWLAQ 391
K++ ++ RF++ R+W +L+S + + E E D RM D ++KL L +
Sbjct: 123 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQK 172
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 344 KTIGSLLRFKRSLRVWQSILDSQMWQLEE--FERDYRMDKDELIKLWLAQ 391
K++ ++ RF++ R+W +L+S + + E E D RM D ++KL L +
Sbjct: 124 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQK 173
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 344 KTIGSLLRFKRSLRVWQSILDSQMWQLEE--FERDYRMDKDELIKLWLAQ 391
K++ ++ RF++ R+W +L+S + + E E D RM D ++KL L +
Sbjct: 123 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQK 172
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 540 IREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLV 599
+ E+P EI+ L +LR L L + LP F L+ + LP FG L
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN--MVTTLPWEFGNLC 316
Query: 600 NLRHL 604
NL+ L
Sbjct: 317 NLQFL 321
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 207 DEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWT 254
D IA +E L GSA LV L R E + LLV D+V T
Sbjct: 216 DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVIT 263
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 100 INKNLDGIHRQKDIFNFSVIRSTERSERMHSTALIDVSDVCGRVEEKSTLKSKLLGEGSE 159
IN GI + + +V ST + + S + + VC +++ LK K + +G+
Sbjct: 17 INTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNV 76
Query: 160 QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI 191
Q T S VG G T++Q + D++
Sbjct: 77 QVKFFDTGSAVGRGIEDSLTISQLTTSQQDIV 108
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 100 INKNLDGIHRQKDIFNFSVIRSTERSERMHSTALIDVSDVCGRVEEKSTLKSKLLGEGSE 159
IN GI + + +V ST + + S + + VC +++ LK K + +G+
Sbjct: 15 INTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNV 74
Query: 160 QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI 191
Q T S VG G T++Q + D++
Sbjct: 75 QVKFFDTGSAVGRGIEDSLTISQLTTSQQDIV 106
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 518 DQLTCLRTLKIVAHDRRWSRGMIR---EIPKEIEKLIHLRFLQLRDLMIDELPETC---- 570
D + CLRT + D + +++ + PK I+++ L + L+I ++ C
Sbjct: 631 DAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRYYN 690
Query: 571 -CELFNLQTLE 580
C++FNLQ LE
Sbjct: 691 YCQIFNLQLLE 701
>pdb|3L8B|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
The Oxidized Guanine Lesion Guanidinohydantoin
pdb|3L8B|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
The Oxidized Guanine Lesion Guanidinohydantoin
pdb|3RMA|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMA|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMA|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMA|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3TAB|A Chain A, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAB|B Chain B, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAB|C Chain C, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAB|D Chain D, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAE|A Chain A, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAE|B Chain B, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAE|C Chain C, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAE|D Chain D, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAF|A Chain A, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAF|B Chain B, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAF|C Chain C, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAF|D Chain D, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAG|A Chain A, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
pdb|3TAG|B Chain B, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
pdb|3TAG|C Chain C, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
pdb|3TAG|D Chain D, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
Length = 906
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
pdb|1WAJ|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|3UIQ|A Chain A, Rb69 Dna Polymerase Ternary Complex Containing Dupnpp
Length = 903
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SQ1|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dupcpp Opposite
Da
Length = 901
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|1Q9Y|A Chain A, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With 8-Oxoguanosine Containing Dna
Length = 906
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 251 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 299
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
pdb|1Q9X|A Chain A, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|1Q9X|B Chain B, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|1Q9X|C Chain C, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|1Q9X|D Chain D, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|2ATQ|A Chain A, Rb69 Single-Stranded Dna Binding Protein-Dna Polymerase
Fusion
pdb|2OYQ|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OYQ|B Chain B, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OYQ|C Chain C, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OYQ|D Chain D, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OZM|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nitp Opposite An Abasic Site Analog
pdb|2OZS|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna With
Datp Opposite Dtmp
pdb|3NCI|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite Dg
At 1.8 Angstrom Resolution
pdb|4DU1|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite Dt
pdb|4DU3|A Chain A, Rb69 Dna Polymerase Ternary Complex With Ddtp Opposite Dt
With 3- Deaza-Adenine At The N-1 Position Of Template
Strand
pdb|4DU4|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite Dt
With 3- Deaza-Adenine At The N-3 Position Of Primer
Strand
Length = 903
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SQ2|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite 2ap
(At Rich Sequence)
pdb|3SQ4|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite 2ap
(Gc Rich Sequence)
Length = 902
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3NE6|A Chain A, Rb69 Dna Polymerase (S565gY567A) TERNARY COMPLEX WITH DCTP
OPPOSITE Dg
pdb|3NHG|A Chain A, Rb69 Dna Polymerase (S565gY567A) TERNARY COMPLEX WITH DTTP
OPPOSITE Dg
Length = 903
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3LZI|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite 7,8- Dihydro-8-Oxoguanine
pdb|3LZJ|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite 7,8- Dihydro-8-Oxoguanine
pdb|3NAE|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite Guanidinohydantoin
pdb|3NDK|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite Dg
pdb|3NGI|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp
Opposite Dg
pdb|3SUP|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite 2ap (Gc Rich Sequence)
Length = 903
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3LDS|A Chain A, Crystal Structure Of Rb69 Gp43 With Dna And Datp Opposite
8-
Length = 903
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SCX|A Chain A, Rb69 Dna Polymerase Triple Mutant(L561aS565GY567A) TERNARY
COMPLEX With Dupnpp And A Deoxy-Terminated Primer In The
Presence Of Ca2+
pdb|3SI6|A Chain A, Rb69 Dna Polymerase Triple Mutant (L561aS565GY567A)
TERNARY COMPLEX With Dupnpp And A Deoxy-Terminated
Primer In The Presence Of Mg2+
pdb|3SJJ|A Chain A, Rb69 Dna Polymerase Triple Mutant (L561aS565GY567A)
TERNARY COMPLEX With Dupnpp And A Deoxy-Terminated
Primer In The Presence Of Mn2+
pdb|3SNN|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DCTP Opposite Dg In The Presence Of Mg2+
Length = 903
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3RWU|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite Difluorotoluene Nucleoside
pdb|3QNN|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dgt
Opposite 3tco
pdb|3QNO|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite 3tco
Length = 901
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3CFO|A Chain A, Triple Mutant Apo Structure
pdb|3CFP|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase, Ternary Complex 1
pdb|3CFR|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase, Ternary Complex 2
Length = 909
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SUO|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp
Opposite 2ap (Gc Rich Sequence)
Length = 900
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3QEP|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DTTP Opposite Difluorotoluene Nucleoside
pdb|3S9H|A Chain A, Rb69 Dna Polymerase Triple Mutant(L561aS565GY567A) TERNARY
COMPLEX With Dupnpp And A Dideoxy-Terminated Primer In
The Presence Of Ca2+
pdb|3SQ0|A Chain A, Dna Polymerase(L561aS565GY567A) TERNARY COMPLEX WITH
DUPNPP OPPOSITE Da (Mn2+)
pdb|3QEI|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DCTP Opposite Difluorotoluene Nucleoside
pdb|3QER|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DATP Opposite Difluorotoluene Nucleoside
pdb|3QES|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DGTP Opposite Difluorotoluene Nucleoside
pdb|3QET|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DTTP Opposite Dt
pdb|3QEV|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DCTP Opposite Dt
pdb|3QEW|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DDTP Opposite Dt
pdb|3QEX|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DGTP Opposite Dt
pdb|4E3S|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dqtp Opposite Dt
pdb|4DTN|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite An
Abasic Site And DdaDT AS THE PENULTIMATE BASE-Pair
pdb|4DTO|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite An
Abasic Site And DdaDT AS THE PENULTIMATE BASE-Pair
pdb|4DTP|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp Opposite An
Abasic Site And DdaDT AS THE PENULTIMATE BASE-Pair
pdb|4DTR|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4DTS|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4DTU|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4DTX|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4FJM|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/da
Length = 903
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3CQ8|A Chain A, Ternary Complex Of The L415f Mutant Rb69 Exo(-)polymerase
Length = 903
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|4DTJ|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite An
Abasic Site And DdtDA AS THE PENULTIMATE BASE-Pair
pdb|4DTM|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite An
Abasic Site And DdgDC AS THE PENULTIMATE BASE-Pair
Length = 901
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SUQ|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite 2ap (At Rich Sequence)
Length = 897
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SUN|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp
Opposite 2ap (At Rich Sequence)
Length = 895
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SPZ|A Chain A, Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLEX WITH
DUPCPP Opposite Da (Ca2+)
pdb|4FJ5|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/dt
pdb|4FJ7|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/dt
pdb|4FJ8|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/dt
pdb|4FJ9|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/dt
pdb|4FJG|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/dc
pdb|4FJH|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/dc
pdb|4FJI|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/dc
pdb|4FJJ|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/dc
pdb|4FJK|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/da
pdb|4FJL|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/da
pdb|4FJN|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/da
pdb|4FJX|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/dg
pdb|4FK0|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/dg
pdb|4FK2|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/dg
pdb|4FK4|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/dg
Length = 903
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3SPY|A Chain A, Rb69 Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLEX
WITH Dupcpp Opposite Da
Length = 901
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|3KD1|E Chain E, Closed Binary Complex Of An Rb69 Gp43 Fingers Domain
Mutant Complexed With An Acyclic Gmp Terminated Primer
Template Pair.
pdb|3KD5|E Chain E, Closed Ternary Complex Of An Rb69 Gp43 Fingers Domain
Mutant Complexed With An Acyclic Gmp Terminated Primer
Template Pair And Phosphonoformic Acid
Length = 913
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 280 TRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328
TR + + M S ++I++ +S + L+++ +F N+PS + + EF
Sbjct: 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEF 296
>pdb|2A5Y|B Chain B, Structure Of A Ced-4CED-9 Complex
pdb|2A5Y|C Chain C, Structure Of A Ced-4CED-9 Complex
pdb|3LQQ|A Chain A, Structure Of The Ced-4 Apoptosome
pdb|3LQQ|B Chain B, Structure Of The Ced-4 Apoptosome
pdb|3LQR|A Chain A, Structure Of Ced-4:ced-3 Complex
pdb|3LQR|B Chain B, Structure Of Ced-4:ced-3 Complex
Length = 549
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 237 NESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGMMEST-DVI 295
N I R L V DDV E+ +W R + LVTTR ++ T + I
Sbjct: 237 NALIDRPNTLFVFDDVVQEETIRWAQELRL--------RCLVTTRDVEISNAASQTCEFI 288
Query: 296 SIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340
+ L EC+ E + P E+ E+ K + G P
Sbjct: 289 EVTSLEIDECYDFLEA---YGMPMPVGEKEEDVLNKTIELSSGNP 330
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 58/206 (28%)
Query: 476 HSMLMLGFEASFPDSLLNAKKL---RSFLISSPYDVFSS---------------VLPR-L 516
H + E DSL+N K+L + L + P VF S VLP +
Sbjct: 48 HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 517 FDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNL 576
FD+L L+ L + + + E+P+ IE+L HL L L
Sbjct: 108 FDRLVHLKELFMCCNK-------LTELPRGIERLTHLTHLALDQ---------------- 144
Query: 577 QTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLR 635
L+ +PHG F RL +L H F G+ D R H
Sbjct: 145 ---------NQLKSIPHGAFDRLSSLTHAYLF-----GNPWDCECRDIMYLRNWVADHTS 190
Query: 636 GSLRIRGLGNVKDVDEAKSAGLENKM 661
++R G V D D AK AG +
Sbjct: 191 IAMRWDGKA-VNDPDSAKCAGTNTPV 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,541,205
Number of Sequences: 62578
Number of extensions: 801140
Number of successful extensions: 2124
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2083
Number of HSP's gapped (non-prelim): 49
length of query: 674
length of database: 14,973,337
effective HSP length: 105
effective length of query: 569
effective length of database: 8,402,647
effective search space: 4781106143
effective search space used: 4781106143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)