Query 039885
Match_columns 674
No_of_seqs 588 out of 3849
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-77 3.6E-82 678.9 43.7 629 1-672 30-728 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-47 2.5E-52 459.0 37.0 484 134-672 181-736 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.7E-38 8.1E-43 323.9 15.0 250 142-398 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.5 1E-13 2.2E-18 166.5 8.9 177 472-672 164-343 (968)
5 KOG0444 Cytoskeletal regulator 99.4 7.8E-15 1.7E-19 152.8 -3.0 128 472-609 55-183 (1255)
6 PLN00113 leucine-rich repeat r 99.4 2.6E-13 5.6E-18 163.1 9.3 179 470-672 186-367 (968)
7 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.2E-20 131.4 -4.9 127 472-610 56-184 (264)
8 KOG0617 Ras suppressor protein 99.4 5.6E-15 1.2E-19 130.3 -5.6 151 471-644 32-184 (264)
9 KOG0444 Cytoskeletal regulator 99.4 1.7E-14 3.7E-19 150.3 -5.4 174 474-671 152-349 (1255)
10 TIGR03015 pepcterm_ATPase puta 99.3 1.9E-10 4.1E-15 116.9 23.4 182 164-350 43-242 (269)
11 PRK04841 transcriptional regul 99.3 6E-10 1.3E-14 133.3 28.3 196 136-353 13-232 (903)
12 PRK00411 cdc6 cell division co 99.3 1.3E-10 2.7E-15 125.1 20.1 212 134-348 27-257 (394)
13 KOG4194 Membrane glycoprotein 99.2 5.7E-12 1.2E-16 131.1 5.3 183 471-672 101-304 (873)
14 KOG0472 Leucine-rich repeat pr 99.2 3.3E-13 7.1E-18 134.4 -4.0 102 472-584 206-307 (565)
15 PF01637 Arch_ATPase: Archaeal 99.2 6.6E-11 1.4E-15 117.4 11.5 194 139-345 1-233 (234)
16 TIGR02928 orc1/cdc6 family rep 99.2 2.3E-09 5E-14 114.1 20.2 208 135-344 13-244 (365)
17 PLN03210 Resistant to P. syrin 99.1 9.2E-11 2E-15 141.8 10.3 108 473-592 612-721 (1153)
18 KOG0472 Leucine-rich repeat pr 99.1 5.2E-12 1.1E-16 126.0 -2.8 153 472-646 388-541 (565)
19 PF05729 NACHT: NACHT domain 99.1 9.7E-10 2.1E-14 102.7 12.0 143 165-313 1-163 (166)
20 KOG0532 Leucine-rich repeat (L 99.0 9.9E-12 2.1E-16 129.3 -3.7 170 473-672 76-245 (722)
21 KOG4194 Membrane glycoprotein 99.0 7.4E-11 1.6E-15 123.0 2.5 173 473-672 150-328 (873)
22 KOG0618 Serine/threonine phosp 99.0 3.6E-11 7.9E-16 131.8 -1.6 120 536-673 367-488 (1081)
23 COG2256 MGS1 ATPase related to 99.0 5.8E-09 1.3E-13 105.4 12.6 174 135-344 28-210 (436)
24 PRK15370 E3 ubiquitin-protein 98.9 1.8E-09 3.8E-14 122.6 7.9 119 470-610 197-315 (754)
25 TIGR00635 ruvB Holliday juncti 98.9 1.3E-08 2.9E-13 105.3 13.3 194 137-349 4-204 (305)
26 PRK06893 DNA replication initi 98.9 3.7E-08 8E-13 97.0 15.7 156 164-350 39-207 (229)
27 PRK00080 ruvB Holliday junctio 98.9 1.9E-08 4.2E-13 104.9 13.8 180 137-349 25-225 (328)
28 PRK15370 E3 ubiquitin-protein 98.8 1.9E-09 4.1E-14 122.4 4.8 116 473-610 263-378 (754)
29 KOG0618 Serine/threonine phosp 98.8 4.6E-10 9.9E-15 123.3 -0.4 154 470-645 308-488 (1081)
30 PRK13342 recombination factor 98.8 6.9E-08 1.5E-12 103.8 15.4 179 137-349 12-199 (413)
31 PRK15387 E3 ubiquitin-protein 98.8 1.7E-08 3.6E-13 114.2 9.8 34 470-506 240-273 (788)
32 PF14580 LRR_9: Leucine-rich r 98.8 4.1E-09 8.8E-14 97.7 4.1 123 472-608 19-149 (175)
33 PTZ00112 origin recognition co 98.8 2.2E-07 4.7E-12 103.2 18.0 213 136-350 754-986 (1164)
34 cd00116 LRR_RI Leucine-rich re 98.8 4E-09 8.8E-14 110.0 4.2 63 545-608 159-230 (319)
35 COG2909 MalT ATP-dependent tra 98.8 5.1E-07 1.1E-11 99.6 20.2 283 136-448 18-338 (894)
36 cd00116 LRR_RI Leucine-rich re 98.7 3.6E-09 7.8E-14 110.3 2.8 185 471-672 50-261 (319)
37 PF13401 AAA_22: AAA domain; P 98.7 3.7E-08 8E-13 88.1 8.4 118 163-282 3-125 (131)
38 PRK14961 DNA polymerase III su 98.7 9.6E-07 2.1E-11 93.3 19.7 183 137-346 16-220 (363)
39 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.3E-07 4.9E-12 91.6 14.1 170 143-349 23-204 (226)
40 PRK05564 DNA polymerase III su 98.7 8.5E-07 1.9E-11 91.9 19.0 180 137-346 4-190 (313)
41 PF14580 LRR_9: Leucine-rich r 98.7 5.1E-09 1.1E-13 97.1 1.7 110 490-613 14-127 (175)
42 PRK14963 DNA polymerase III su 98.7 1.1E-07 2.4E-12 103.6 12.3 198 137-344 14-215 (504)
43 PRK12402 replication factor C 98.7 6.1E-07 1.3E-11 94.4 17.7 200 137-347 15-227 (337)
44 PRK15387 E3 ubiquitin-protein 98.7 1.3E-07 2.9E-12 107.0 13.2 83 470-568 220-319 (788)
45 PRK14960 DNA polymerase III su 98.7 1E-06 2.2E-11 96.5 18.2 183 137-346 15-219 (702)
46 PRK14949 DNA polymerase III su 98.7 1E-06 2.3E-11 99.3 18.7 183 137-346 16-220 (944)
47 KOG0532 Leucine-rich repeat (L 98.6 1.5E-09 3.3E-14 113.3 -3.6 126 471-610 120-245 (722)
48 PRK07003 DNA polymerase III su 98.6 1.2E-06 2.6E-11 97.0 18.4 182 137-345 16-220 (830)
49 PF05496 RuvB_N: Holliday junc 98.6 6.5E-07 1.4E-11 85.0 14.2 181 137-350 24-225 (233)
50 KOG4237 Extracellular matrix p 98.6 4.7E-09 1E-13 105.1 -0.7 127 470-606 65-195 (498)
51 COG4886 Leucine-rich repeat (L 98.6 2.5E-08 5.4E-13 107.4 4.2 172 472-672 116-288 (394)
52 PF13191 AAA_16: AAA ATPase do 98.6 6.3E-08 1.4E-12 92.3 6.3 49 138-189 1-49 (185)
53 KOG2028 ATPase related to the 98.6 3.1E-07 6.7E-12 91.3 11.1 160 161-342 159-332 (554)
54 PLN03150 hypothetical protein; 98.6 5E-08 1.1E-12 110.3 6.5 103 497-609 420-525 (623)
55 cd00009 AAA The AAA+ (ATPases 98.6 5E-07 1.1E-11 82.2 12.0 125 140-284 1-131 (151)
56 PLN03025 replication factor C 98.6 1.8E-06 3.9E-11 89.7 17.1 185 137-346 13-200 (319)
57 PRK00440 rfc replication facto 98.6 3E-06 6.6E-11 88.3 18.9 184 137-347 17-204 (319)
58 cd01128 rho_factor Transcripti 98.6 8.8E-08 1.9E-12 94.6 6.8 91 163-254 15-114 (249)
59 PRK12323 DNA polymerase III su 98.6 1.8E-06 4E-11 94.3 16.9 183 137-346 16-225 (700)
60 PRK14957 DNA polymerase III su 98.6 2.7E-06 6E-11 93.0 18.2 183 137-346 16-221 (546)
61 TIGR02903 spore_lon_C ATP-depe 98.6 1.6E-06 3.6E-11 97.3 16.8 203 137-349 154-398 (615)
62 KOG4658 Apoptotic ATPase [Sign 98.5 5.1E-08 1.1E-12 112.6 4.3 153 492-669 520-676 (889)
63 COG1474 CDC6 Cdc6-related prot 98.5 5.8E-06 1.3E-10 86.5 19.1 207 137-346 17-238 (366)
64 PRK06645 DNA polymerase III su 98.5 6.9E-06 1.5E-10 89.3 20.0 196 137-345 21-228 (507)
65 PRK07994 DNA polymerase III su 98.5 3.3E-06 7.2E-11 93.8 17.6 195 137-347 16-221 (647)
66 TIGR02397 dnaX_nterm DNA polym 98.5 8E-06 1.7E-10 86.6 19.8 183 137-347 14-219 (355)
67 PLN03150 hypothetical protein; 98.5 1.6E-07 3.5E-12 106.1 7.1 110 473-592 419-532 (623)
68 PRK14956 DNA polymerase III su 98.5 2.2E-06 4.9E-11 91.3 15.1 198 137-346 18-222 (484)
69 PF13173 AAA_14: AAA domain 98.5 6.4E-07 1.4E-11 79.6 9.3 119 165-305 3-127 (128)
70 PRK08727 hypothetical protein; 98.5 5.1E-06 1.1E-10 82.0 16.6 151 165-346 42-204 (233)
71 PRK13341 recombination factor 98.5 2.7E-06 5.8E-11 96.5 16.3 174 137-346 28-217 (725)
72 PRK04195 replication factor C 98.5 4.4E-06 9.6E-11 91.8 17.6 186 137-350 14-206 (482)
73 PRK08691 DNA polymerase III su 98.5 4.2E-06 9E-11 92.7 16.8 184 137-347 16-221 (709)
74 PRK14951 DNA polymerase III su 98.5 6.1E-06 1.3E-10 91.5 18.1 197 137-346 16-225 (618)
75 PTZ00202 tuzin; Provisional 98.5 9.1E-06 2E-10 84.2 17.9 168 133-312 258-433 (550)
76 PRK05896 DNA polymerase III su 98.5 6.4E-06 1.4E-10 90.2 17.9 195 137-347 16-222 (605)
77 PRK14962 DNA polymerase III su 98.5 8.2E-06 1.8E-10 88.4 18.5 200 137-363 14-239 (472)
78 PRK14964 DNA polymerase III su 98.5 7E-06 1.5E-10 88.5 17.7 184 137-346 13-217 (491)
79 PRK14958 DNA polymerase III su 98.5 6.1E-06 1.3E-10 90.4 17.5 183 137-346 16-220 (509)
80 PRK09087 hypothetical protein; 98.4 8E-06 1.7E-10 80.0 16.6 159 164-364 44-220 (226)
81 KOG1259 Nischarin, modulator o 98.4 3E-08 6.5E-13 95.8 -0.9 129 471-613 283-413 (490)
82 PRK07940 DNA polymerase III su 98.4 9.4E-06 2E-10 85.8 17.4 184 137-347 5-214 (394)
83 COG3899 Predicted ATPase [Gene 98.4 1.7E-05 3.7E-10 92.2 20.5 205 138-352 1-266 (849)
84 TIGR00678 holB DNA polymerase 98.4 1.6E-05 3.4E-10 75.9 16.8 92 241-342 94-187 (188)
85 KOG1259 Nischarin, modulator o 98.4 6.1E-08 1.3E-12 93.7 -0.2 101 496-610 285-385 (490)
86 PRK08903 DnaA regulatory inact 98.4 8.2E-06 1.8E-10 80.5 15.0 153 163-350 41-203 (227)
87 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.6E-12 100.9 3.1 168 477-672 98-266 (394)
88 PF13855 LRR_8: Leucine rich r 98.4 3.9E-07 8.5E-12 69.2 4.1 57 521-584 1-59 (61)
89 PRK14969 DNA polymerase III su 98.4 1.2E-05 2.5E-10 88.8 17.3 183 137-346 16-220 (527)
90 PRK09376 rho transcription ter 98.4 7.5E-07 1.6E-11 91.6 7.2 102 147-254 157-267 (416)
91 PRK07471 DNA polymerase III su 98.4 2.5E-05 5.5E-10 81.9 18.5 194 137-347 19-239 (365)
92 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.8E-12 96.3 1.2 132 471-613 145-285 (505)
93 PRK08084 DNA replication initi 98.3 1.1E-05 2.3E-10 79.9 14.8 156 164-350 45-213 (235)
94 PRK14955 DNA polymerase III su 98.3 1.5E-05 3.2E-10 85.3 16.8 200 137-345 16-227 (397)
95 PRK09111 DNA polymerase III su 98.3 2.2E-05 4.7E-10 87.4 18.5 198 137-347 24-234 (598)
96 TIGR01242 26Sp45 26S proteasom 98.3 9.5E-06 2.1E-10 86.0 14.7 182 134-340 119-328 (364)
97 PRK09112 DNA polymerase III su 98.3 1.3E-05 2.9E-10 83.5 15.2 196 137-347 23-241 (351)
98 PRK05642 DNA replication initi 98.3 2E-05 4.3E-10 77.8 15.7 156 164-350 45-212 (234)
99 PRK14970 DNA polymerase III su 98.3 3.9E-05 8.5E-10 81.6 18.9 182 137-345 17-208 (367)
100 KOG4237 Extracellular matrix p 98.3 1E-07 2.2E-12 95.7 -0.8 117 483-612 57-177 (498)
101 PRK14950 DNA polymerase III su 98.3 1.8E-05 3.9E-10 88.9 16.8 196 137-347 16-222 (585)
102 PRK07764 DNA polymerase III su 98.3 3.5E-05 7.5E-10 88.7 18.9 193 137-345 15-220 (824)
103 PF00308 Bac_DnaA: Bacterial d 98.3 2.3E-05 4.9E-10 76.5 15.0 185 138-347 10-209 (219)
104 PRK14959 DNA polymerase III su 98.3 3.7E-05 7.9E-10 84.9 18.1 198 137-350 16-225 (624)
105 PRK14952 DNA polymerase III su 98.3 5.2E-05 1.1E-09 83.9 19.3 194 137-346 13-220 (584)
106 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 66.5 4.3 60 495-563 1-61 (61)
107 PRK14087 dnaA chromosomal repl 98.2 4E-05 8.6E-10 83.0 17.6 169 164-348 141-321 (450)
108 PRK14953 DNA polymerase III su 98.2 0.00011 2.5E-09 80.0 20.5 184 137-347 16-221 (486)
109 PRK07133 DNA polymerase III su 98.2 8.5E-05 1.8E-09 83.3 19.5 191 137-345 18-218 (725)
110 PF05621 TniB: Bacterial TniB 98.2 7.5E-05 1.6E-09 74.5 17.1 199 144-346 44-261 (302)
111 TIGR00767 rho transcription te 98.2 3.6E-06 7.8E-11 87.2 7.7 91 163-254 167-266 (415)
112 PRK08451 DNA polymerase III su 98.2 0.00012 2.7E-09 79.8 19.5 180 137-347 14-219 (535)
113 PRK14971 DNA polymerase III su 98.2 0.00011 2.5E-09 82.3 19.4 181 137-345 17-221 (614)
114 KOG2227 Pre-initiation complex 98.2 5.4E-05 1.2E-09 78.4 15.2 212 135-348 148-374 (529)
115 CHL00181 cbbX CbbX; Provisiona 98.1 0.00016 3.4E-09 73.6 18.4 137 164-316 59-212 (287)
116 PRK14954 DNA polymerase III su 98.1 0.0001 2.2E-09 82.3 18.3 198 137-343 16-225 (620)
117 PRK11331 5-methylcytosine-spec 98.1 1.2E-05 2.6E-10 84.7 10.3 120 137-268 175-298 (459)
118 PRK14948 DNA polymerase III su 98.1 0.00015 3.3E-09 81.3 19.6 198 137-348 16-224 (620)
119 PRK06620 hypothetical protein; 98.1 0.00017 3.7E-09 70.0 17.3 139 165-347 45-190 (214)
120 PRK06305 DNA polymerase III su 98.1 0.00015 3.2E-09 78.6 18.6 180 137-344 17-220 (451)
121 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.6E-11 59.1 3.6 33 552-584 2-34 (44)
122 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.5E-11 58.8 3.6 41 521-568 1-41 (44)
123 TIGR00362 DnaA chromosomal rep 98.1 0.0002 4.4E-09 77.1 18.6 159 164-344 136-308 (405)
124 TIGR02881 spore_V_K stage V sp 98.1 9.5E-05 2.1E-09 74.5 15.1 162 138-315 7-193 (261)
125 PHA02544 44 clamp loader, smal 98.1 6.9E-05 1.5E-09 78.0 14.6 148 137-311 21-171 (316)
126 TIGR02880 cbbX_cfxQ probable R 98.1 0.0002 4.4E-09 72.8 17.4 134 166-315 60-210 (284)
127 PRK03992 proteasome-activating 98.1 5.2E-05 1.1E-09 80.8 13.6 181 135-340 129-337 (389)
128 PRK14965 DNA polymerase III su 98.0 0.00017 3.7E-09 80.7 18.0 194 137-346 16-221 (576)
129 PRK06647 DNA polymerase III su 98.0 0.0003 6.5E-09 78.0 19.3 194 137-346 16-220 (563)
130 TIGR03345 VI_ClpV1 type VI sec 98.0 4.6E-05 9.9E-10 88.8 13.2 155 137-313 187-363 (852)
131 PRK14088 dnaA chromosomal repl 98.0 0.00022 4.8E-09 77.1 16.4 160 164-344 130-303 (440)
132 PF05673 DUF815: Protein of un 98.0 0.00018 3.9E-09 69.5 13.8 124 134-284 24-152 (249)
133 PRK05563 DNA polymerase III su 97.9 0.00057 1.2E-08 76.1 19.8 194 137-346 16-220 (559)
134 TIGR02639 ClpA ATP-dependent C 97.9 0.00011 2.5E-09 84.8 14.5 155 138-313 183-358 (731)
135 KOG2543 Origin recognition com 97.9 0.00037 8E-09 70.7 15.7 170 135-312 4-192 (438)
136 PRK00149 dnaA chromosomal repl 97.9 0.00037 8.1E-09 76.1 17.4 159 164-344 148-320 (450)
137 PRK14086 dnaA chromosomal repl 97.9 0.00055 1.2E-08 75.4 18.0 158 165-344 315-486 (617)
138 COG2255 RuvB Holliday junction 97.9 0.00019 4.1E-09 69.9 12.7 179 137-348 26-225 (332)
139 KOG0989 Replication factor C, 97.9 0.00032 7E-09 69.0 13.9 190 137-347 36-231 (346)
140 CHL00095 clpC Clp protease ATP 97.9 0.00012 2.6E-09 85.6 13.2 155 137-312 179-353 (821)
141 COG3903 Predicted ATPase [Gene 97.9 2E-05 4.4E-10 80.8 5.9 181 163-353 13-196 (414)
142 PRK12422 chromosomal replicati 97.8 0.00043 9.4E-09 74.7 16.0 154 164-339 141-306 (445)
143 PRK07399 DNA polymerase III su 97.8 0.00079 1.7E-08 69.3 16.9 199 137-347 4-222 (314)
144 PRK05707 DNA polymerase III su 97.8 0.00088 1.9E-08 69.4 17.2 97 242-346 105-203 (328)
145 PF00004 AAA: ATPase family as 97.8 0.00012 2.5E-09 65.3 9.5 96 167-282 1-111 (132)
146 KOG3207 Beta-tubulin folding c 97.7 9.9E-06 2.1E-10 82.9 0.8 129 472-610 172-312 (505)
147 COG0593 DnaA ATPase involved i 97.7 0.00088 1.9E-08 70.2 15.1 238 163-424 112-374 (408)
148 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0003 6.6E-09 82.6 13.1 154 138-313 174-349 (852)
149 PF14516 AAA_35: AAA-like doma 97.7 0.002 4.3E-08 67.2 17.2 200 137-353 11-246 (331)
150 COG3267 ExeA Type II secretory 97.7 0.0036 7.8E-08 60.5 17.1 195 144-348 34-247 (269)
151 TIGR03689 pup_AAA proteasome A 97.7 0.0011 2.5E-08 72.0 15.7 167 137-313 182-378 (512)
152 TIGR00602 rad24 checkpoint pro 97.6 0.00036 7.9E-09 77.8 12.0 209 137-350 84-327 (637)
153 KOG3665 ZYG-1-like serine/thre 97.6 2.5E-05 5.5E-10 88.3 2.6 127 472-610 122-261 (699)
154 PRK08116 hypothetical protein; 97.6 0.00022 4.8E-09 71.7 9.1 104 165-283 115-221 (268)
155 PRK11034 clpA ATP-dependent Cl 97.6 0.00043 9.3E-09 79.2 12.4 156 138-313 187-362 (758)
156 PRK08058 DNA polymerase III su 97.6 0.0017 3.6E-08 67.7 15.9 148 138-311 6-180 (329)
157 smart00382 AAA ATPases associa 97.6 0.00043 9.2E-09 62.0 10.1 88 165-256 3-91 (148)
158 KOG1859 Leucine-rich repeat pr 97.6 1.8E-06 3.8E-11 93.2 -6.5 112 513-644 179-290 (1096)
159 PRK06871 DNA polymerase III su 97.6 0.0036 7.8E-08 64.4 17.5 182 146-346 11-203 (325)
160 PRK06090 DNA polymerase III su 97.6 0.0037 7.9E-08 64.2 17.3 94 242-347 107-202 (319)
161 PRK10536 hypothetical protein; 97.6 0.00067 1.4E-08 66.5 11.3 135 137-283 55-213 (262)
162 KOG4579 Leucine-rich repeat (L 97.6 1E-05 2.2E-10 69.8 -1.2 94 490-594 48-141 (177)
163 PRK08769 DNA polymerase III su 97.6 0.0029 6.3E-08 64.9 16.3 96 242-347 112-209 (319)
164 PRK15386 type III secretion pr 97.5 0.00016 3.5E-09 75.5 6.9 113 472-608 52-186 (426)
165 PTZ00454 26S protease regulato 97.5 0.0021 4.5E-08 68.4 15.2 181 135-340 143-351 (398)
166 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.2E-10 86.2 -1.2 117 479-609 79-196 (414)
167 PRK10865 protein disaggregatio 97.5 0.00094 2E-08 78.2 13.3 45 137-187 178-222 (857)
168 TIGR02639 ClpA ATP-dependent C 97.5 0.0013 2.8E-08 76.1 14.1 122 137-270 454-580 (731)
169 TIGR00763 lon ATP-dependent pr 97.5 0.0017 3.7E-08 75.6 15.0 165 137-313 320-505 (775)
170 PF13177 DNA_pol3_delta2: DNA 97.5 0.0026 5.6E-08 58.9 13.2 139 141-301 1-162 (162)
171 KOG1859 Leucine-rich repeat pr 97.5 4.9E-06 1.1E-10 89.9 -5.6 126 471-610 163-290 (1096)
172 KOG1909 Ran GTPase-activating 97.5 1.8E-05 3.9E-10 78.9 -1.3 185 472-672 92-309 (382)
173 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0053 1.2E-07 61.8 16.4 121 145-283 10-161 (262)
174 CHL00176 ftsH cell division pr 97.4 0.0024 5.2E-08 71.9 15.1 177 137-338 183-386 (638)
175 PTZ00361 26 proteosome regulat 97.4 0.00081 1.8E-08 72.0 10.7 158 137-314 183-368 (438)
176 COG1373 Predicted ATPase (AAA+ 97.4 0.0031 6.8E-08 67.3 15.0 118 166-308 39-162 (398)
177 KOG3665 ZYG-1-like serine/thre 97.4 6.4E-05 1.4E-09 85.1 2.2 107 494-610 121-231 (699)
178 PRK13531 regulatory ATPase Rav 97.4 0.0013 2.8E-08 70.4 11.5 152 138-312 21-193 (498)
179 KOG4579 Leucine-rich repeat (L 97.4 1.8E-05 3.8E-10 68.4 -1.9 86 516-610 48-134 (177)
180 PRK10865 protein disaggregatio 97.4 0.0021 4.6E-08 75.4 14.1 138 137-282 568-720 (857)
181 PRK08118 topology modulation p 97.4 8.3E-05 1.8E-09 69.2 2.1 34 166-199 3-37 (167)
182 PRK15386 type III secretion pr 97.3 0.00044 9.5E-09 72.4 7.1 87 491-598 48-137 (426)
183 COG2812 DnaX DNA polymerase II 97.3 0.00054 1.2E-08 74.0 7.9 188 137-342 16-216 (515)
184 PRK10787 DNA-binding ATP-depen 97.3 0.00076 1.6E-08 77.9 9.7 166 136-313 321-506 (784)
185 TIGR01241 FtsH_fam ATP-depende 97.3 0.0064 1.4E-07 67.3 16.5 186 136-346 54-267 (495)
186 PF07693 KAP_NTPase: KAP famil 97.3 0.014 3.1E-07 60.8 18.5 167 143-312 2-262 (325)
187 COG0542 clpA ATP-binding subun 97.3 0.00065 1.4E-08 76.4 8.2 122 137-270 491-620 (786)
188 PF04665 Pox_A32: Poxvirus A32 97.3 0.00048 1E-08 67.2 6.2 36 165-202 14-49 (241)
189 PRK08181 transposase; Validate 97.3 0.00095 2.1E-08 66.9 8.3 101 165-283 107-209 (269)
190 KOG0531 Protein phosphatase 1, 97.3 5.3E-05 1.2E-09 81.9 -0.7 103 470-584 93-196 (414)
191 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0018 3.9E-08 76.2 11.9 136 137-282 565-717 (852)
192 PF10443 RNA12: RNA12 protein; 97.2 0.014 3.1E-07 61.1 16.9 204 142-358 1-290 (431)
193 PRK12377 putative replication 97.2 0.00049 1.1E-08 68.0 6.0 100 165-281 102-204 (248)
194 PRK07993 DNA polymerase III su 97.2 0.013 2.9E-07 60.8 16.9 180 145-346 10-204 (334)
195 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0014 3E-08 76.6 10.5 136 137-282 566-718 (852)
196 PF07728 AAA_5: AAA domain (dy 97.2 0.00022 4.7E-09 64.3 3.1 89 167-268 2-90 (139)
197 PRK12608 transcription termina 97.2 0.0018 3.9E-08 67.0 9.9 103 145-253 119-230 (380)
198 PRK04132 replication factor C 97.2 0.016 3.4E-07 66.9 18.2 157 172-348 574-733 (846)
199 PF02562 PhoH: PhoH-like prote 97.2 0.00047 1E-08 65.7 5.0 132 140-283 3-156 (205)
200 PRK06964 DNA polymerase III su 97.2 0.019 4.2E-07 59.5 17.3 94 242-347 131-226 (342)
201 PRK06526 transposase; Provisio 97.2 0.00076 1.6E-08 67.2 6.4 100 165-283 99-201 (254)
202 PRK08939 primosomal protein Dn 97.2 0.0019 4E-08 66.3 9.4 121 141-281 135-259 (306)
203 PRK06921 hypothetical protein; 97.2 0.0021 4.6E-08 64.6 9.6 99 164-282 117-224 (266)
204 PRK09183 transposase/IS protei 97.1 0.0024 5.3E-08 63.9 9.9 100 165-282 103-205 (259)
205 KOG2004 Mitochondrial ATP-depe 97.1 0.003 6.6E-08 69.0 10.9 166 136-313 410-596 (906)
206 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.7E-08 62.8 7.4 113 165-284 3-117 (190)
207 COG0466 Lon ATP-dependent Lon 97.1 0.00087 1.9E-08 73.4 6.8 166 136-313 322-508 (782)
208 PRK07952 DNA replication prote 97.1 0.0026 5.6E-08 62.8 9.5 102 164-281 99-203 (244)
209 PF01695 IstB_IS21: IstB-like 97.1 0.00057 1.2E-08 64.3 4.6 101 164-283 47-150 (178)
210 COG1222 RPT1 ATP-dependent 26S 97.1 0.021 4.5E-07 57.9 15.6 188 137-350 151-371 (406)
211 PRK07261 topology modulation p 97.1 0.0013 2.9E-08 61.5 7.0 34 166-199 2-36 (171)
212 KOG1909 Ran GTPase-activating 97.1 0.00029 6.4E-09 70.4 2.4 112 492-610 89-224 (382)
213 COG0470 HolB ATPase involved i 97.1 0.0045 9.8E-08 64.6 11.6 142 138-299 2-167 (325)
214 TIGR02902 spore_lonB ATP-depen 97.0 0.0046 1E-07 68.6 11.7 43 138-186 66-108 (531)
215 KOG1644 U2-associated snRNP A' 97.0 0.00086 1.9E-08 62.1 4.6 98 476-583 46-149 (233)
216 CHL00095 clpC Clp protease ATP 97.0 0.0032 6.9E-08 73.9 10.6 136 137-282 509-661 (821)
217 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00053 1.2E-08 70.6 3.6 52 136-187 50-101 (361)
218 KOG1514 Origin recognition com 97.0 0.029 6.2E-07 61.7 16.6 205 138-348 397-623 (767)
219 KOG0991 Replication factor C, 97.0 0.0051 1.1E-07 58.2 9.4 44 137-186 27-70 (333)
220 KOG0741 AAA+-type ATPase [Post 97.0 0.022 4.7E-07 60.4 14.9 149 162-336 536-704 (744)
221 TIGR01243 CDC48 AAA family ATP 96.9 0.0092 2E-07 69.4 13.3 181 136-341 177-382 (733)
222 PRK06835 DNA replication prote 96.9 0.0024 5.2E-08 66.0 7.5 102 165-282 184-288 (329)
223 cd03214 ABC_Iron-Siderophores_ 96.9 0.013 2.7E-07 55.4 11.7 119 164-286 25-161 (180)
224 TIGR02237 recomb_radB DNA repa 96.8 0.0039 8.4E-08 60.5 8.1 48 163-213 11-58 (209)
225 PRK09361 radB DNA repair and r 96.8 0.0054 1.2E-07 60.3 9.2 46 163-211 22-67 (225)
226 PRK08699 DNA polymerase III su 96.8 0.019 4.1E-07 59.5 13.4 71 242-312 112-184 (325)
227 PRK11034 clpA ATP-dependent Cl 96.8 0.0058 1.3E-07 70.2 10.4 120 138-270 459-584 (758)
228 cd03247 ABCC_cytochrome_bd The 96.8 0.011 2.5E-07 55.6 10.9 118 164-287 28-161 (178)
229 PHA02244 ATPase-like protein 96.8 0.012 2.6E-07 60.9 11.5 42 138-187 97-142 (383)
230 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0099 2.1E-07 58.8 10.8 56 163-219 18-77 (235)
231 COG1136 SalX ABC-type antimicr 96.8 0.015 3.2E-07 56.2 11.3 64 227-290 144-210 (226)
232 KOG2228 Origin recognition com 96.8 0.016 3.5E-07 58.1 11.7 172 137-313 24-219 (408)
233 PF13207 AAA_17: AAA domain; P 96.8 0.001 2.2E-08 58.3 3.1 22 166-187 1-22 (121)
234 COG1484 DnaC DNA replication p 96.8 0.0048 1E-07 61.5 8.2 80 165-261 106-185 (254)
235 PRK05541 adenylylsulfate kinas 96.8 0.0055 1.2E-07 57.6 8.3 36 163-200 6-41 (176)
236 KOG2120 SCF ubiquitin ligase, 96.7 0.00011 2.3E-09 71.8 -3.6 154 471-643 209-373 (419)
237 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.015 3.2E-07 52.7 10.5 105 164-287 26-131 (144)
238 PRK13695 putative NTPase; Prov 96.7 0.0024 5.3E-08 60.0 5.4 22 166-187 2-23 (174)
239 TIGR01243 CDC48 AAA family ATP 96.7 0.033 7.2E-07 64.8 15.9 179 137-340 453-657 (733)
240 PF14532 Sigma54_activ_2: Sigm 96.7 0.0018 3.9E-08 58.2 4.4 108 140-283 1-110 (138)
241 COG0542 clpA ATP-binding subun 96.7 0.0064 1.4E-07 68.6 9.4 154 138-312 171-345 (786)
242 cd03223 ABCD_peroxisomal_ALDP 96.7 0.021 4.6E-07 53.1 11.5 117 164-287 27-152 (166)
243 cd01393 recA_like RecA is a b 96.7 0.011 2.4E-07 58.0 10.0 88 163-253 18-124 (226)
244 COG2607 Predicted ATPase (AAA+ 96.7 0.14 3.1E-06 49.2 16.4 108 136-270 59-167 (287)
245 cd03228 ABCC_MRP_Like The MRP 96.6 0.014 3.1E-07 54.5 10.1 118 164-288 28-160 (171)
246 PRK11889 flhF flagellar biosyn 96.6 0.023 4.9E-07 59.3 12.2 104 163-269 240-348 (436)
247 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0047 1E-07 61.5 6.9 88 163-252 68-172 (274)
248 COG1875 NYN ribonuclease and A 96.6 0.0068 1.5E-07 61.4 7.9 131 141-282 228-387 (436)
249 PHA00729 NTP-binding motif con 96.6 0.0047 1E-07 59.6 6.6 25 163-187 16-40 (226)
250 PF08423 Rad51: Rad51; InterP 96.6 0.0076 1.6E-07 60.3 8.5 57 163-220 37-97 (256)
251 cd01120 RecA-like_NTPases RecA 96.6 0.0098 2.1E-07 54.8 8.8 39 166-206 1-39 (165)
252 PF00158 Sigma54_activat: Sigm 96.6 0.0057 1.2E-07 56.8 7.0 131 139-283 1-144 (168)
253 COG1126 GlnQ ABC-type polar am 96.6 0.031 6.7E-07 52.8 11.6 124 163-289 27-202 (240)
254 cd03222 ABC_RNaseL_inhibitor T 96.6 0.019 4.1E-07 53.8 10.5 104 163-287 24-136 (177)
255 PF00560 LRR_1: Leucine Rich R 96.6 0.00081 1.8E-08 39.1 0.7 19 553-571 2-20 (22)
256 cd03216 ABC_Carb_Monos_I This 96.6 0.012 2.5E-07 54.6 8.9 116 164-286 26-145 (163)
257 KOG1969 DNA replication checkp 96.6 0.013 2.7E-07 64.6 10.1 88 161-268 323-412 (877)
258 COG2884 FtsE Predicted ATPase 96.5 0.022 4.8E-07 52.6 10.1 125 163-290 27-204 (223)
259 KOG1644 U2-associated snRNP A' 96.5 0.0029 6.4E-08 58.7 4.5 99 495-606 42-147 (233)
260 PRK06696 uridine kinase; Valid 96.5 0.0026 5.6E-08 62.4 4.5 44 141-187 2-45 (223)
261 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.0087 1.9E-07 54.6 7.5 118 165-284 3-139 (159)
262 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.02 4.3E-07 56.2 10.3 120 165-286 31-202 (254)
263 KOG0735 AAA+-type ATPase [Post 96.5 0.069 1.5E-06 58.8 15.2 95 137-253 408-504 (952)
264 cd03238 ABC_UvrA The excision 96.5 0.014 3.1E-07 54.6 9.1 115 163-287 20-153 (176)
265 cd01394 radB RadB. The archaea 96.5 0.013 2.9E-07 57.2 9.3 43 163-207 18-60 (218)
266 PF07724 AAA_2: AAA domain (Cd 96.5 0.004 8.7E-08 58.1 5.2 93 163-269 2-105 (171)
267 CHL00195 ycf46 Ycf46; Provisio 96.5 0.026 5.7E-07 61.6 12.1 180 137-340 228-429 (489)
268 PF00448 SRP54: SRP54-type pro 96.5 0.0084 1.8E-07 57.3 7.4 57 164-222 1-58 (196)
269 PF13671 AAA_33: AAA domain; P 96.5 0.015 3.2E-07 52.5 8.7 21 166-186 1-21 (143)
270 TIGR03499 FlhF flagellar biosy 96.5 0.0091 2E-07 60.7 8.0 87 163-252 193-281 (282)
271 TIGR02238 recomb_DMC1 meiotic 96.5 0.013 2.8E-07 60.2 9.2 58 163-221 95-156 (313)
272 cd03246 ABCC_Protease_Secretio 96.4 0.02 4.2E-07 53.7 9.4 120 164-287 28-160 (173)
273 PRK15455 PrkA family serine pr 96.4 0.0018 3.9E-08 70.2 2.6 49 138-186 77-125 (644)
274 COG4608 AppF ABC-type oligopep 96.4 0.022 4.7E-07 56.0 9.7 126 163-291 38-178 (268)
275 PRK05703 flhF flagellar biosyn 96.4 0.033 7.1E-07 59.9 12.0 102 164-268 221-326 (424)
276 KOG2120 SCF ubiquitin ligase, 96.3 0.00035 7.7E-09 68.3 -2.9 159 441-610 203-374 (419)
277 cd03230 ABC_DR_subfamily_A Thi 96.3 0.034 7.3E-07 52.1 10.5 112 164-287 26-159 (173)
278 PRK06067 flagellar accessory p 96.3 0.031 6.8E-07 55.2 10.8 116 162-282 23-164 (234)
279 PF13604 AAA_30: AAA domain; P 96.3 0.0034 7.3E-08 60.2 3.6 105 165-281 19-129 (196)
280 PRK12724 flagellar biosynthesi 96.3 0.021 4.6E-07 60.2 9.8 25 163-187 222-246 (432)
281 COG1223 Predicted ATPase (AAA+ 96.3 0.084 1.8E-06 51.1 12.8 157 137-314 121-298 (368)
282 KOG1051 Chaperone HSP104 and r 96.3 0.024 5.3E-07 65.0 10.8 122 138-270 563-687 (898)
283 COG0714 MoxR-like ATPases [Gen 96.3 0.019 4.2E-07 59.9 9.6 112 137-269 24-138 (329)
284 PLN03187 meiotic recombination 96.3 0.02 4.3E-07 59.5 9.3 58 163-221 125-186 (344)
285 cd00983 recA RecA is a bacter 96.3 0.0096 2.1E-07 61.0 6.9 83 163-252 54-142 (325)
286 PLN03186 DNA repair protein RA 96.3 0.021 4.5E-07 59.4 9.4 58 163-221 122-183 (342)
287 TIGR02012 tigrfam_recA protein 96.3 0.01 2.2E-07 60.8 6.9 85 162-253 53-143 (321)
288 cd01131 PilT Pilus retraction 96.2 0.007 1.5E-07 58.1 5.5 110 165-286 2-112 (198)
289 KOG0744 AAA+-type ATPase [Post 96.2 0.082 1.8E-06 52.9 12.7 79 164-252 177-259 (423)
290 TIGR01817 nifA Nif-specific re 96.2 0.067 1.5E-06 59.9 13.9 134 135-283 194-341 (534)
291 PRK11608 pspF phage shock prot 96.2 0.016 3.4E-07 60.4 8.2 134 138-283 7-151 (326)
292 TIGR02239 recomb_RAD51 DNA rep 96.2 0.026 5.7E-07 58.2 9.7 57 163-220 95-155 (316)
293 TIGR01650 PD_CobS cobaltochela 96.2 0.29 6.3E-06 50.2 16.8 61 139-212 47-107 (327)
294 PRK04301 radA DNA repair and r 96.1 0.039 8.5E-07 57.2 10.7 56 163-219 101-160 (317)
295 KOG0734 AAA+-type ATPase conta 96.1 0.02 4.3E-07 60.8 8.3 53 137-189 304-362 (752)
296 KOG0730 AAA+-type ATPase [Post 96.1 0.063 1.4E-06 58.8 12.2 53 135-187 432-491 (693)
297 COG1419 FlhF Flagellar GTP-bin 96.1 0.05 1.1E-06 56.7 11.1 105 163-270 202-310 (407)
298 KOG0733 Nuclear AAA ATPase (VC 96.1 0.02 4.3E-07 61.8 8.2 99 136-254 189-293 (802)
299 PRK09354 recA recombinase A; P 96.1 0.015 3.3E-07 60.1 7.3 85 162-253 58-148 (349)
300 KOG0731 AAA+-type ATPase conta 96.1 0.12 2.6E-06 58.3 14.5 184 137-344 311-522 (774)
301 PF03215 Rad17: Rad17 cell cyc 96.0 0.061 1.3E-06 59.1 12.1 60 138-202 20-79 (519)
302 PRK14722 flhF flagellar biosyn 96.0 0.047 1E-06 57.2 10.7 90 163-254 136-226 (374)
303 PRK15429 formate hydrogenlyase 96.0 0.033 7.2E-07 64.3 10.5 135 137-283 376-521 (686)
304 KOG2035 Replication factor C, 96.0 0.16 3.5E-06 49.8 13.2 190 139-351 15-233 (351)
305 cd03215 ABC_Carb_Monos_II This 96.0 0.072 1.6E-06 50.4 11.0 52 235-286 114-167 (182)
306 PRK12727 flagellar biosynthesi 96.0 0.027 5.8E-07 61.1 8.7 89 163-253 349-438 (559)
307 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.025 5.4E-07 52.0 7.5 116 165-288 26-145 (157)
308 PRK07667 uridine kinase; Provi 95.9 0.0088 1.9E-07 57.2 4.6 38 146-187 3-40 (193)
309 PTZ00035 Rad51 protein; Provis 95.9 0.052 1.1E-06 56.5 10.6 57 163-220 117-177 (337)
310 PRK14974 cell division protein 95.9 0.1 2.3E-06 54.0 12.6 113 163-278 139-259 (336)
311 TIGR02974 phageshock_pspF psp 95.9 0.024 5.2E-07 59.0 8.1 129 139-282 1-143 (329)
312 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.12 2.6E-06 50.0 12.5 55 234-288 134-189 (207)
313 cd02025 PanK Pantothenate kina 95.9 0.025 5.4E-07 55.2 7.6 22 166-187 1-22 (220)
314 KOG0924 mRNA splicing factor A 95.9 0.069 1.5E-06 58.2 11.3 126 145-284 360-511 (1042)
315 cd03233 ABC_PDR_domain1 The pl 95.9 0.093 2E-06 50.5 11.5 25 163-187 32-56 (202)
316 PRK00771 signal recognition pa 95.9 0.051 1.1E-06 58.4 10.4 56 163-221 94-151 (437)
317 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.058 1.3E-06 51.9 9.9 120 163-287 25-168 (200)
318 TIGR02236 recomb_radA DNA repa 95.9 0.06 1.3E-06 55.7 10.7 57 163-220 94-154 (310)
319 PRK12723 flagellar biosynthesi 95.9 0.062 1.3E-06 56.8 10.8 104 163-269 173-282 (388)
320 PRK08533 flagellar accessory p 95.9 0.066 1.4E-06 52.6 10.4 49 163-215 23-71 (230)
321 PRK13539 cytochrome c biogenes 95.9 0.082 1.8E-06 51.1 11.0 62 235-299 137-200 (207)
322 cd03229 ABC_Class3 This class 95.9 0.03 6.5E-07 52.7 7.7 120 164-287 26-165 (178)
323 COG0396 sufC Cysteine desulfur 95.8 0.14 3E-06 49.0 11.8 65 231-295 150-216 (251)
324 KOG2739 Leucine-rich acidic nu 95.8 0.0036 7.8E-08 60.6 1.3 84 517-610 61-154 (260)
325 cd03269 ABC_putative_ATPase Th 95.8 0.12 2.5E-06 50.2 11.9 24 164-187 26-49 (210)
326 TIGR00554 panK_bact pantothena 95.8 0.036 7.8E-07 56.1 8.4 25 162-186 60-84 (290)
327 TIGR02858 spore_III_AA stage I 95.8 0.057 1.2E-06 54.2 9.8 125 145-287 97-233 (270)
328 cd03115 SRP The signal recogni 95.8 0.058 1.3E-06 50.5 9.4 22 166-187 2-23 (173)
329 PRK05439 pantothenate kinase; 95.8 0.038 8.3E-07 56.4 8.5 80 161-244 83-166 (311)
330 cd03263 ABC_subfamily_A The AB 95.8 0.08 1.7E-06 51.7 10.6 54 235-288 143-197 (220)
331 COG1618 Predicted nucleotide k 95.8 0.0079 1.7E-07 53.9 3.0 24 164-187 5-28 (179)
332 PLN00020 ribulose bisphosphate 95.8 0.019 4.2E-07 59.1 6.2 26 162-187 146-171 (413)
333 COG4618 ArpD ABC-type protease 95.7 0.055 1.2E-06 57.5 9.5 23 164-186 362-384 (580)
334 PRK07132 DNA polymerase III su 95.7 0.92 2E-05 46.3 18.3 134 163-312 17-161 (299)
335 PF13238 AAA_18: AAA domain; P 95.7 0.0076 1.6E-07 53.1 2.9 21 167-187 1-21 (129)
336 cd03232 ABC_PDR_domain2 The pl 95.7 0.065 1.4E-06 51.1 9.5 119 164-284 33-169 (192)
337 KOG2982 Uncharacterized conser 95.7 0.0018 4E-08 63.4 -1.2 177 472-667 71-285 (418)
338 cd03245 ABCC_bacteriocin_expor 95.7 0.11 2.4E-06 50.7 11.4 25 163-187 29-53 (220)
339 PRK05800 cobU adenosylcobinami 95.7 0.024 5.2E-07 52.8 6.2 80 166-252 3-85 (170)
340 COG0468 RecA RecA/RadA recombi 95.7 0.051 1.1E-06 54.5 8.8 88 162-252 58-150 (279)
341 cd03213 ABCG_EPDR ABCG transpo 95.7 0.1 2.2E-06 49.9 10.7 119 163-284 34-172 (194)
342 cd03226 ABC_cobalt_CbiO_domain 95.7 0.11 2.4E-06 50.1 11.1 53 235-287 136-190 (205)
343 cd03251 ABCC_MsbA MsbA is an e 95.7 0.18 3.9E-06 49.8 12.8 56 233-288 146-202 (234)
344 PF00006 ATP-synt_ab: ATP synt 95.7 0.037 7.9E-07 53.5 7.5 84 165-252 16-114 (215)
345 PF00485 PRK: Phosphoribulokin 95.7 0.0084 1.8E-07 57.4 3.1 80 166-247 1-87 (194)
346 TIGR03740 galliderm_ABC gallid 95.6 0.13 2.9E-06 50.3 11.7 53 235-287 134-188 (223)
347 cd03235 ABC_Metallic_Cations A 95.6 0.12 2.6E-06 50.2 11.2 24 164-187 25-48 (213)
348 cd03253 ABCC_ATM1_transporter 95.6 0.13 2.9E-06 50.8 11.8 56 233-288 145-201 (236)
349 TIGR00708 cobA cob(I)alamin ad 95.6 0.051 1.1E-06 50.2 8.0 119 164-283 5-140 (173)
350 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.14 3E-06 49.7 11.6 121 164-289 29-160 (213)
351 TIGR00235 udk uridine kinase. 95.6 0.01 2.2E-07 57.5 3.5 26 162-187 4-29 (207)
352 cd01122 GP4d_helicase GP4d_hel 95.6 0.16 3.5E-06 51.3 12.5 55 163-220 29-83 (271)
353 cd03244 ABCC_MRP_domain2 Domai 95.6 0.13 2.8E-06 50.3 11.3 54 235-288 149-203 (221)
354 PRK13540 cytochrome c biogenes 95.6 0.11 2.4E-06 49.9 10.6 55 234-288 136-192 (200)
355 COG1102 Cmk Cytidylate kinase 95.6 0.021 4.5E-07 51.3 4.9 44 166-222 2-45 (179)
356 PRK10247 putative ABC transpor 95.6 0.13 2.8E-06 50.5 11.2 62 234-297 146-210 (225)
357 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.087 1.9E-06 52.4 10.1 125 164-288 25-181 (246)
358 cd03259 ABC_Carb_Solutes_like 95.5 0.14 3.1E-06 49.6 11.5 53 234-286 139-194 (213)
359 cd03264 ABC_drug_resistance_li 95.5 0.12 2.5E-06 50.2 10.7 21 166-186 27-47 (211)
360 TIGR00959 ffh signal recogniti 95.5 0.14 3.1E-06 54.9 12.1 25 163-187 98-122 (428)
361 cd03283 ABC_MutS-like MutS-lik 95.5 0.11 2.3E-06 49.9 10.2 22 165-186 26-47 (199)
362 PRK09270 nucleoside triphospha 95.5 0.046 1E-06 53.8 7.9 26 162-187 31-56 (229)
363 PRK08233 hypothetical protein; 95.5 0.01 2.3E-07 56.0 3.2 24 164-187 3-26 (182)
364 PRK05480 uridine/cytidine kina 95.5 0.011 2.4E-07 57.4 3.4 25 163-187 5-29 (209)
365 PRK11248 tauB taurine transpor 95.5 0.17 3.6E-06 50.8 11.9 24 164-187 27-50 (255)
366 PRK09544 znuC high-affinity zi 95.5 0.12 2.6E-06 51.7 10.8 25 163-187 29-53 (251)
367 COG0563 Adk Adenylate kinase a 95.5 0.023 5E-07 53.2 5.3 22 166-187 2-23 (178)
368 PRK13538 cytochrome c biogenes 95.5 0.16 3.4E-06 49.0 11.3 24 164-187 27-50 (204)
369 PRK13543 cytochrome c biogenes 95.5 0.2 4.2E-06 48.8 12.1 24 164-187 37-60 (214)
370 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.2 4.3E-06 49.1 12.2 24 164-187 48-71 (224)
371 KOG2123 Uncharacterized conser 95.5 0.0014 3.1E-08 63.6 -2.9 100 494-606 18-124 (388)
372 cd03231 ABC_CcmA_heme_exporter 95.5 0.13 2.9E-06 49.4 10.8 25 163-187 25-49 (201)
373 TIGR03771 anch_rpt_ABC anchore 95.4 0.13 2.8E-06 50.4 10.8 54 234-287 122-177 (223)
374 PRK10923 glnG nitrogen regulat 95.4 0.15 3.2E-06 56.3 12.5 133 137-283 138-283 (469)
375 TIGR03864 PQQ_ABC_ATP ABC tran 95.4 0.12 2.7E-06 51.0 10.7 53 235-287 142-197 (236)
376 cd03254 ABCC_Glucan_exporter_l 95.4 0.19 4.1E-06 49.4 12.0 56 233-288 147-203 (229)
377 cd03252 ABCC_Hemolysin The ABC 95.4 0.24 5.2E-06 49.0 12.8 53 236-288 149-202 (237)
378 cd01124 KaiC KaiC is a circadi 95.4 0.091 2E-06 49.7 9.4 44 167-214 2-45 (187)
379 cd02019 NK Nucleoside/nucleoti 95.4 0.011 2.3E-07 46.0 2.3 22 166-187 1-22 (69)
380 PRK05022 anaerobic nitric oxid 95.4 0.064 1.4E-06 59.6 9.4 134 136-283 186-332 (509)
381 KOG0733 Nuclear AAA ATPase (VC 95.4 0.14 3.1E-06 55.5 11.4 181 138-340 512-718 (802)
382 PRK15177 Vi polysaccharide exp 95.4 0.15 3.1E-06 49.6 10.9 25 163-187 12-36 (213)
383 cd03266 ABC_NatA_sodium_export 95.4 0.18 3.9E-06 49.1 11.6 24 164-187 31-54 (218)
384 TIGR02324 CP_lyasePhnL phospho 95.4 0.25 5.5E-06 48.3 12.7 24 164-187 34-57 (224)
385 PRK12726 flagellar biosynthesi 95.4 0.14 3.1E-06 53.4 11.0 104 162-267 204-311 (407)
386 PRK06547 hypothetical protein; 95.4 0.02 4.3E-07 53.5 4.5 25 163-187 14-38 (172)
387 TIGR03522 GldA_ABC_ATP gliding 95.4 0.24 5.2E-06 51.0 12.9 52 236-287 144-196 (301)
388 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.022 4.7E-07 54.8 4.9 121 164-291 29-159 (204)
389 cd03301 ABC_MalK_N The N-termi 95.3 0.17 3.7E-06 49.1 11.2 24 164-187 26-49 (213)
390 COG0464 SpoVK ATPases of the A 95.3 0.24 5.2E-06 55.0 13.7 158 137-314 242-424 (494)
391 PF03308 ArgK: ArgK protein; 95.3 0.022 4.9E-07 55.6 4.7 65 145-213 14-78 (266)
392 cd03224 ABC_TM1139_LivF_branch 95.3 0.19 4.1E-06 49.1 11.5 24 163-186 25-48 (222)
393 KOG2739 Leucine-rich acidic nu 95.3 0.007 1.5E-07 58.7 1.2 87 513-610 35-127 (260)
394 PRK10867 signal recognition pa 95.3 0.045 9.8E-07 58.6 7.4 24 163-186 99-122 (433)
395 cd03268 ABC_BcrA_bacitracin_re 95.3 0.16 3.4E-06 49.2 10.7 54 235-288 136-191 (208)
396 TIGR01277 thiQ thiamine ABC tr 95.3 0.15 3.2E-06 49.6 10.5 25 163-187 23-47 (213)
397 PRK08972 fliI flagellum-specif 95.3 0.063 1.4E-06 57.1 8.3 86 164-253 162-262 (444)
398 cd01135 V_A-ATPase_B V/A-type 95.3 0.058 1.3E-06 53.7 7.5 91 163-253 68-176 (276)
399 COG2842 Uncharacterized ATPase 95.3 0.43 9.3E-06 47.6 13.4 124 137-273 72-195 (297)
400 cd03285 ABC_MSH2_euk MutS2 hom 95.2 0.0081 1.7E-07 58.7 1.5 176 163-351 29-218 (222)
401 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.21 4.6E-06 49.4 11.7 53 235-287 149-202 (238)
402 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.18 3.9E-06 49.6 11.2 114 163-281 19-164 (229)
403 PRK06002 fliI flagellum-specif 95.2 0.06 1.3E-06 57.6 8.0 87 163-252 164-263 (450)
404 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.11 2.4E-06 51.4 9.6 49 163-215 20-68 (237)
405 PRK09580 sufC cysteine desulfu 95.2 0.18 3.8E-06 50.3 11.2 24 164-187 27-50 (248)
406 TIGR01425 SRP54_euk signal rec 95.2 0.43 9.3E-06 51.0 14.4 24 163-186 99-122 (429)
407 cd03258 ABC_MetN_methionine_tr 95.2 0.14 3.1E-06 50.5 10.3 54 234-287 149-205 (233)
408 PRK11247 ssuB aliphatic sulfon 95.2 0.25 5.5E-06 49.5 12.2 24 164-187 38-61 (257)
409 cd03293 ABC_NrtD_SsuB_transpor 95.2 0.15 3.3E-06 49.7 10.5 24 164-187 30-53 (220)
410 PRK06762 hypothetical protein; 95.2 0.014 3.1E-07 54.2 3.0 23 165-187 3-25 (166)
411 PRK13647 cbiO cobalt transport 95.2 0.14 3E-06 51.9 10.4 53 234-286 147-201 (274)
412 PF12775 AAA_7: P-loop contain 95.2 0.017 3.7E-07 58.2 3.7 93 146-257 22-114 (272)
413 COG1120 FepC ABC-type cobalami 95.2 0.14 3E-06 50.6 9.7 128 163-290 27-206 (258)
414 PRK13650 cbiO cobalt transport 95.2 0.12 2.6E-06 52.6 9.8 54 234-287 149-205 (279)
415 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.022 4.7E-07 58.4 4.2 52 135-186 59-110 (358)
416 PTZ00088 adenylate kinase 1; P 95.1 0.021 4.7E-07 55.9 4.1 22 166-187 8-29 (229)
417 cd03298 ABC_ThiQ_thiamine_tran 95.1 0.085 1.8E-06 51.2 8.3 53 235-287 138-193 (211)
418 cd03278 ABC_SMC_barmotin Barmo 95.1 0.21 4.5E-06 47.9 10.8 20 166-185 24-43 (197)
419 TIGR01189 ccmA heme ABC export 95.1 0.23 4.9E-06 47.6 11.2 25 163-187 25-49 (198)
420 PRK13537 nodulation ABC transp 95.1 0.21 4.5E-06 51.6 11.5 53 236-288 149-203 (306)
421 COG1703 ArgK Putative periplas 95.1 0.027 5.8E-07 55.9 4.6 66 146-215 37-102 (323)
422 cd03250 ABCC_MRP_domain1 Domai 95.1 0.51 1.1E-05 45.4 13.6 59 230-288 132-193 (204)
423 PTZ00301 uridine kinase; Provi 95.1 0.016 3.5E-07 55.9 3.1 23 164-186 3-25 (210)
424 PRK15056 manganese/iron transp 95.1 0.17 3.7E-06 51.2 10.7 24 164-187 33-56 (272)
425 COG1131 CcmA ABC-type multidru 95.1 0.26 5.6E-06 50.4 12.0 24 164-187 31-54 (293)
426 PRK10733 hflB ATP-dependent me 95.1 0.22 4.8E-06 56.8 12.6 157 138-314 153-336 (644)
427 TIGR01188 drrA daunorubicin re 95.1 0.19 4.1E-06 51.8 11.1 54 235-288 134-189 (302)
428 PRK14269 phosphate ABC transpo 95.1 0.27 5.9E-06 48.9 12.0 56 232-287 149-205 (246)
429 cd03240 ABC_Rad50 The catalyti 95.1 0.11 2.4E-06 50.1 8.8 54 235-288 131-188 (204)
430 COG4088 Predicted nucleotide k 95.1 0.013 2.8E-07 54.6 2.1 23 165-187 2-24 (261)
431 cd01125 repA Hexameric Replica 95.0 0.16 3.5E-06 50.3 10.1 21 166-186 3-23 (239)
432 PF07726 AAA_3: ATPase family 95.0 0.023 5E-07 49.4 3.4 40 167-211 2-41 (131)
433 PRK03839 putative kinase; Prov 95.0 0.016 3.5E-07 54.7 2.8 22 166-187 2-23 (180)
434 KOG0738 AAA+-type ATPase [Post 95.0 0.21 4.6E-06 51.3 10.7 50 138-187 213-268 (491)
435 PRK08006 replicative DNA helic 95.0 2.7 5.8E-05 46.0 20.2 55 163-220 223-277 (471)
436 PRK05986 cob(I)alamin adenolsy 95.0 0.055 1.2E-06 50.8 6.2 120 164-284 22-159 (191)
437 cd02027 APSK Adenosine 5'-phos 95.0 0.19 4.1E-06 45.7 9.7 22 166-187 1-22 (149)
438 COG0572 Udk Uridine kinase [Nu 95.0 0.02 4.4E-07 54.6 3.3 26 162-187 6-31 (218)
439 PF00154 RecA: recA bacterial 95.0 0.043 9.2E-07 56.2 5.9 83 163-252 52-140 (322)
440 TIGR02314 ABC_MetN D-methionin 95.0 0.19 4.1E-06 52.5 10.9 56 233-288 148-206 (343)
441 PRK13545 tagH teichoic acids e 95.0 0.28 6E-06 53.7 12.3 54 234-287 152-207 (549)
442 PRK14250 phosphate ABC transpo 95.0 0.19 4.1E-06 49.9 10.4 24 164-187 29-52 (241)
443 KOG0729 26S proteasome regulat 95.0 0.19 4E-06 48.8 9.6 58 135-194 175-239 (435)
444 cd03236 ABC_RNaseL_inhibitor_d 95.0 0.24 5.3E-06 49.5 11.2 25 163-187 25-49 (255)
445 TIGR00150 HI0065_YjeE ATPase, 94.9 0.031 6.6E-07 49.4 4.0 41 144-188 6-46 (133)
446 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.088 1.9E-06 55.3 8.1 104 162-284 60-168 (362)
447 TIGR01360 aden_kin_iso1 adenyl 94.9 0.02 4.3E-07 54.4 3.1 24 163-186 2-25 (188)
448 TIGR00064 ftsY signal recognit 94.9 0.11 2.4E-06 52.4 8.6 88 163-253 71-164 (272)
449 cd03267 ABC_NatA_like Similar 94.9 0.27 5.8E-06 48.7 11.2 54 235-288 163-219 (236)
450 PRK10820 DNA-binding transcrip 94.9 0.089 1.9E-06 58.5 8.5 152 137-302 204-379 (520)
451 PRK14721 flhF flagellar biosyn 94.9 0.11 2.4E-06 55.4 8.7 24 163-186 190-213 (420)
452 PF08433 KTI12: Chromatin asso 94.9 0.048 1E-06 54.8 5.8 23 165-187 2-24 (270)
453 TIGR01069 mutS2 MutS2 family p 94.9 0.036 7.8E-07 64.2 5.5 101 242-352 401-507 (771)
454 PF00560 LRR_1: Leucine Rich R 94.9 0.018 3.9E-07 33.4 1.6 22 522-550 1-22 (22)
455 PRK04040 adenylate kinase; Pro 94.8 0.022 4.8E-07 54.0 3.2 23 165-187 3-25 (188)
456 PRK12678 transcription termina 94.8 0.028 6.1E-07 61.0 4.2 96 148-252 405-512 (672)
457 cd03294 ABC_Pro_Gly_Bertaine T 94.8 0.31 6.6E-06 49.3 11.6 24 164-187 50-73 (269)
458 cd03248 ABCC_TAP TAP, the Tran 94.8 0.41 9E-06 46.9 12.3 25 163-187 39-63 (226)
459 PRK04328 hypothetical protein; 94.8 0.2 4.3E-06 50.0 10.0 112 163-281 22-171 (249)
460 PF00910 RNA_helicase: RNA hel 94.8 0.015 3.3E-07 49.6 1.7 21 167-187 1-21 (107)
461 TIGR00390 hslU ATP-dependent p 94.8 0.065 1.4E-06 56.5 6.6 81 137-219 12-104 (441)
462 PRK10771 thiQ thiamine transpo 94.8 0.11 2.4E-06 51.2 8.1 23 164-186 25-47 (232)
463 PRK12597 F0F1 ATP synthase sub 94.7 0.059 1.3E-06 58.0 6.4 89 163-252 142-246 (461)
464 PRK11650 ugpC glycerol-3-phosp 94.7 0.27 5.8E-06 51.8 11.3 57 232-288 141-200 (356)
465 TIGR03411 urea_trans_UrtD urea 94.7 0.34 7.3E-06 48.1 11.5 54 234-287 152-206 (242)
466 PRK05917 DNA polymerase III su 94.7 0.49 1.1E-05 47.8 12.5 60 241-300 93-154 (290)
467 cd02023 UMPK Uridine monophosp 94.7 0.019 4.1E-07 55.1 2.3 22 166-187 1-22 (198)
468 PRK00625 shikimate kinase; Pro 94.7 0.022 4.8E-07 53.2 2.6 22 166-187 2-23 (173)
469 PRK14723 flhF flagellar biosyn 94.7 0.11 2.5E-06 59.1 8.7 86 164-252 185-272 (767)
470 COG2274 SunT ABC-type bacterio 94.7 0.32 6.8E-06 55.7 12.3 53 234-286 618-672 (709)
471 PRK09280 F0F1 ATP synthase sub 94.6 0.12 2.5E-06 55.6 8.2 89 163-252 143-247 (463)
472 COG0467 RAD55 RecA-superfamily 94.6 0.061 1.3E-06 54.1 5.9 52 162-217 21-72 (260)
473 PRK08149 ATP synthase SpaL; Va 94.6 0.11 2.4E-06 55.4 7.9 87 163-253 150-251 (428)
474 PRK08927 fliI flagellum-specif 94.6 0.16 3.4E-06 54.4 9.0 87 163-253 157-258 (442)
475 cd01136 ATPase_flagellum-secre 94.6 0.19 4.1E-06 51.8 9.4 85 164-252 69-168 (326)
476 TIGR03498 FliI_clade3 flagella 94.6 0.11 2.3E-06 55.6 7.8 87 163-253 139-240 (418)
477 PRK07276 DNA polymerase III su 94.6 1.6 3.5E-05 44.3 15.9 70 241-311 102-173 (290)
478 PRK13657 cyclic beta-1,2-gluca 94.6 0.16 3.5E-06 57.7 9.9 24 163-186 360-383 (588)
479 TIGR02322 phosphon_PhnN phosph 94.6 0.025 5.5E-07 53.3 2.9 23 165-187 2-24 (179)
480 TIGR02868 CydC thiol reductant 94.6 0.39 8.4E-06 53.9 12.9 24 163-186 360-383 (529)
481 cd03300 ABC_PotA_N PotA is an 94.6 0.24 5.2E-06 48.8 9.9 53 234-286 139-194 (232)
482 PRK13640 cbiO cobalt transport 94.6 0.18 4E-06 51.3 9.3 54 234-287 152-208 (282)
483 PF04548 AIG1: AIG1 family; I 94.6 0.56 1.2E-05 45.5 12.3 23 166-188 2-24 (212)
484 PRK07594 type III secretion sy 94.6 0.14 3.1E-06 54.6 8.7 87 163-253 154-255 (433)
485 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.021 4.6E-07 54.0 2.3 22 166-187 1-22 (183)
486 PF01583 APS_kinase: Adenylyls 94.5 0.032 6.9E-07 50.7 3.2 24 164-187 2-25 (156)
487 KOG3347 Predicted nucleotide k 94.5 0.037 8E-07 48.9 3.4 72 164-245 7-78 (176)
488 PRK11388 DNA-binding transcrip 94.5 0.17 3.6E-06 58.2 9.8 131 137-282 325-466 (638)
489 PRK00131 aroK shikimate kinase 94.5 0.027 5.8E-07 52.7 2.8 24 164-187 4-27 (175)
490 cd03289 ABCC_CFTR2 The CFTR su 94.5 0.46 9.9E-06 48.1 11.9 24 164-187 30-53 (275)
491 PRK00889 adenylylsulfate kinas 94.5 0.032 7E-07 52.4 3.3 25 163-187 3-27 (175)
492 PF13504 LRR_7: Leucine rich r 94.5 0.023 4.9E-07 30.6 1.3 16 552-567 2-17 (17)
493 PRK10418 nikD nickel transport 94.5 0.53 1.2E-05 47.1 12.3 24 164-187 29-52 (254)
494 TIGR02329 propionate_PrpR prop 94.4 0.094 2E-06 58.0 7.3 132 137-283 212-358 (526)
495 PRK06995 flhF flagellar biosyn 94.4 0.13 2.8E-06 55.8 8.2 89 163-253 255-344 (484)
496 COG4133 CcmA ABC-type transpor 94.4 0.65 1.4E-05 43.1 11.4 55 230-284 135-191 (209)
497 PRK14265 phosphate ABC transpo 94.4 0.39 8.4E-06 48.7 11.3 63 234-297 170-233 (274)
498 COG1428 Deoxynucleoside kinase 94.4 0.027 5.8E-07 53.1 2.6 24 164-187 4-27 (216)
499 PRK13409 putative ATPase RIL; 94.4 0.26 5.7E-06 55.6 11.0 132 164-298 365-528 (590)
500 PTZ00494 tuzin-like protein; P 94.4 1.2 2.5E-05 47.1 14.5 168 133-312 367-543 (664)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-77 Score=678.89 Aligned_cols=629 Identities=26% Similarity=0.395 Sum_probs=499.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHhccCCCCCCCCccccCCCCCcc
Q 039885 1 VKLLQDNFEAIQAVLVDADRRQMAEEPVRLWLEKLKYASYDMEDVLDEWNTARLKLQIEGVDNNALAPRKRVCSFFPASS 80 (674)
Q Consensus 1 i~~l~~~l~~i~~~l~da~~~~~~~~~~~~wl~~lrd~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (674)
+..|+++|..++++++||++++.....+..|.+.+++++|++||+++.|.......+..+.-.. +.+..+. .
T Consensus 30 i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~----~~~~~~~----~ 101 (889)
T KOG4658|consen 30 ILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLST----RSVERQR----L 101 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh----hHHHHHH----H
Confidence 3579999999999999999998888899999999999999999999999988876543322000 0000110 0
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHhcccccCceec----cc-cccccccccccccccCceeechhhHHHHHHHhcC
Q 039885 81 CFGSKQVFLRHDIAREIKEINKNLDGIHRQKDIFNFSVI----RS-TERSERMHSTALIDVSDVCGRVEEKSTLKSKLLG 155 (674)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~ 155 (674)
|++ .+++..+..+..+.+++-.+.+....++.... .. ......+++.|..+..+ ||.+..++++.+.|..
T Consensus 102 c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 102 CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 221 45666677777777777777776666654332 11 11112334445555555 9999999999999996
Q ss_pred CCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCc--ccHHHH
Q 039885 156 EGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND-VINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNL--VELNAL 232 (674)
Q Consensus 156 ~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~--~~~~~~ 232 (674)
++ ..+++|+||||+||||||+.++|+.. ++.+||.++||+||+.++...++++|++.++...... ...+++
T Consensus 177 d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~ 250 (889)
T KOG4658|consen 177 DD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDEL 250 (889)
T ss_pred CC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHH
Confidence 53 38999999999999999999999988 9999999999999999999999999999998754433 234688
Q ss_pred HHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh-cCCCCeEeCCCCChHhhHHHHHH
Q 039885 233 LLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGM-MESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
+..|.+.|++|||||||||||+. .+|+.+..++|...+||+|++|||++.|+.. +++...++++.|+++|||.||++
T Consensus 251 ~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~ 328 (889)
T KOG4658|consen 251 ASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQK 328 (889)
T ss_pred HHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHH
Confidence 99999999999999999999987 5799999999999999999999999999998 78888999999999999999999
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHHHHhhhcc-----------------------
Q 039885 312 IAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQSILDSQMW----------------------- 368 (674)
Q Consensus 312 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~----------------------- 368 (674)
.||..... ..+.++++|++|+++|+|+|||++++|+.|+.|.+.++|.++++...+
T Consensus 329 ~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 329 KVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred hhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 99876442 335599999999999999999999999999999999999998764333
Q ss_pred ----------ccccccCCcccChhhHHHHHHHhccccCCC-CccHHHHHHHHHHHHHHcCCCcccccCCCCCeeeeEEeC
Q 039885 369 ----------QLEEFERDYRMDKDELIKLWLAQGYIRPKE-NKELEMIGEEYFDYLATRSFFQEFETDDYDGLVVSCKMH 437 (674)
Q Consensus 369 ----------~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~-~~~~e~~~~~~~~~Lv~rsll~~~~~~~~~~~~~~~~mH 437 (674)
+.+-||.||+|+++.||.+||||||+.+.. +.+++++|+.|+.+|+++||++..... ++.. +|+||
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmH 484 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKE-TVKMH 484 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--ccee-EEEee
Confidence 233467799999999999999999999944 567999999999999999999987653 4555 89999
Q ss_pred hHHHHHHHHhhc-----ccceEeccCCCcCCccccCCCCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccc
Q 039885 438 DIVHDFAQYLTK-----NECFSTEANGHEEPLSLINTPKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSV 512 (674)
Q Consensus 438 dlv~d~~~~~s~-----~e~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 512 (674)
|+|||+|.++|+ .|++++..+......+ ....+..+|++++.+|....++.. ...++|++|.+.+|...+...
T Consensus 485 DvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~-~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQIVSDGVGLSEIP-QVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred HHHHHHHHHHhccccccccceEEECCcCccccc-cccchhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhc
Confidence 999999999999 6766655442111111 122457899999999988766644 345589999999985324444
Q ss_pred hhHhhccCCceeEEEeccccccccccc-cccccccccCCCCCcceeecCCCCccccccccCCCcccEEEecccccccccc
Q 039885 513 LPRLFDQLTCLRTLKIVAHDRRWSRGM-IREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRL 591 (674)
Q Consensus 513 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~l 591 (674)
.+.+|..++.|||||| ++|. +..+|++|++|.|||||+|+++.+..||.++++|..|++||+..+ ..+..+
T Consensus 563 s~~ff~~m~~LrVLDL-------s~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~-~~l~~~ 634 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDL-------SGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT-GRLESI 634 (889)
T ss_pred CHHHHhhCcceEEEEC-------CCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc-cccccc
Confidence 5677999999999999 8775 778999999999999999999999999999999999999999998 666677
Q ss_pred ccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCC--CC-------------------Chh
Q 039885 592 PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGN--VK-------------------DVD 650 (674)
Q Consensus 592 P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~--~~-------------------~~~ 650 (674)
|..+..|.+||+|.++...... ....+++|.+|.+|+ .+.+..-+. .. ...
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~~~~-------~~~~l~el~~Le~L~-~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~ 706 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSALSN-------DKLLLKELENLEHLE-NLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK 706 (889)
T ss_pred cchhhhcccccEEEeecccccc-------chhhHHhhhcccchh-hheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence 7777789999999997654223 566788888888877 565543221 00 111
Q ss_pred hhhhccCCccCCCCeEEEeecC
Q 039885 651 EAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 651 ~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
......+..+.+|+.|.+..+.
T Consensus 707 ~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 707 RTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred ceeecccccccCcceEEEEcCC
Confidence 2333456677888888876553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-47 Score=458.95 Aligned_cols=484 Identities=19% Similarity=0.262 Sum_probs=318.3
Q ss_pred cccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe---CCC-----
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV---SDP----- 205 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~----- 205 (674)
.+.+++|||+..++++..+|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988644 34789999999999999999999999 47788998888742 111
Q ss_pred ------CC-HHHHHHHHHHHhhCCCC-CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE
Q 039885 206 ------FD-EYRIAKAIIEALEGSAT-NLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL 277 (674)
Q Consensus 206 ------~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 277 (674)
+. ...+.++++.++..... .... ...+++.+++||+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344555555433221 1111 14567788999999999999864 67888887766678899999
Q ss_pred EEcCChhHHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChH
Q 039885 278 VTTRKETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLR 357 (674)
Q Consensus 278 vTtR~~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~ 357 (674)
||||+..++..++..++|+++.|++++||+||+++||+... ++..+.+++++|+++|+|+|||++++|++|+.+ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999988777789999999999999999999997653 345788999999999999999999999999876 789
Q ss_pred HHHHHHhhhccccccc-------cCC-cccChhhHHHHHHHhccccCCCCccHHHHH------HHHHHHHHHcCCCcccc
Q 039885 358 VWQSILDSQMWQLEEF-------ERD-YRMDKDELIKLWLAQGYIRPKENKELEMIG------EEYFDYLATRSFFQEFE 423 (674)
Q Consensus 358 ~w~~~l~~~~~~l~~~-------~~~-~~~~~~~li~~Wiaeg~i~~~~~~~~e~~~------~~~~~~Lv~rsll~~~~ 423 (674)
+|+.++++....+... ..+ ..-..++.+.+|+|+.|..........-.+ +.-++.|+++||++...
T Consensus 406 ~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~ 485 (1153)
T PLN03210 406 DWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE 485 (1153)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC
Confidence 9999987754332110 001 112245667788888765432211111111 22388999999998743
Q ss_pred cCCCCCeeeeEEeChHHHHHHHHhhcccc-------eEeccCCCcCCccccCCCCCceeEEEEEcCCcCCc---cccccC
Q 039885 424 TDDYDGLVVSCKMHDIVHDFAQYLTKNEC-------FSTEANGHEEPLSLINTPKEKLRHSMLMLGFEASF---PDSLLN 493 (674)
Q Consensus 424 ~~~~~~~~~~~~mHdlv~d~~~~~s~~e~-------~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~---p~~~~~ 493 (674)
. .+.|||++|+||+.+++++. +.+....... ..........++.+++..+....+ +..+..
T Consensus 486 ~--------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~-vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 486 D--------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICD-VLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred C--------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHH-HHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 2 69999999999999987653 2211110000 000111334455555543333211 223445
Q ss_pred CCCceEEEec-------------------------------CCCcccccchhHhhccCCceeEEEecccccccccccccc
Q 039885 494 AKKLRSFLIS-------------------------------SPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE 542 (674)
Q Consensus 494 l~~L~~L~l~-------------------------------~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~ 542 (674)
+++|+.|.+. ++. +.. +|..| .+.+|+.|+| .+|.+..
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--l~~-lP~~f-~~~~L~~L~L-------~~s~l~~ 625 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--LRC-MPSNF-RPENLVKLQM-------QGSKLEK 625 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--CCC-CCCcC-CccCCcEEEC-------cCccccc
Confidence 5555555553 332 222 23323 3456666666 6666777
Q ss_pred ccccccCCCCCcceeecCCC-CccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCC
Q 039885 543 IPKEIEKLIHLRFLQLRDLM-IDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSR 621 (674)
Q Consensus 543 lp~~i~~L~~Lr~L~L~~~~-i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 621 (674)
+|..+..+++|++|+|+++. ++.+|. ++.+++|++|+|++| ..+..+|..+++|++|++|++..+. . .
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c-~~L~~lp~si~~L~~L~~L~L~~c~--~-------L 694 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC-SSLVELPSSIQYLNKLEDLDMSRCE--N-------L 694 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC-CCccccchhhhccCCCCEEeCCCCC--C-------c
Confidence 77777777777777777665 666663 677777777777777 5677777777777777777775443 1 1
Q ss_pred CCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 622 GCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 622 ~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
...+... ++++|+ .|.++++..+....+ ...+|+.|+|+.|.
T Consensus 695 ~~Lp~~i-~l~sL~-~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 695 EILPTGI-NLKSLY-RLNLSGCSRLKSFPD-------ISTNISWLDLDETA 736 (1153)
T ss_pred CccCCcC-CCCCCC-EEeCCCCCCcccccc-------ccCCcCeeecCCCc
Confidence 1111111 455565 666666544332211 12467777776654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.7e-38 Score=323.89 Aligned_cols=250 Identities=38% Similarity=0.597 Sum_probs=196.7
Q ss_pred chhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhC
Q 039885 142 RVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEG 221 (674)
Q Consensus 142 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 221 (674)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999753 378999999999999999999999987789999999999999999999999999999988
Q ss_pred CCC---CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhcCC-CCeEeC
Q 039885 222 SAT---NLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGMMES-TDVISI 297 (674)
Q Consensus 222 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~-~~~~~l 297 (674)
... ...+.+.....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567788999999999999999999999875 5898888888887889999999999998877654 679999
Q ss_pred CCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHHHHhhhc----------
Q 039885 298 KELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQSILDSQM---------- 367 (674)
Q Consensus 298 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~---------- 367 (674)
++|+.++|++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|.++++...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997665 1223455678899999999999999999999976667788888765422
Q ss_pred ----------------------cccccccCCcccChhhHHHHHHHhccccCCC
Q 039885 368 ----------------------WQLEEFERDYRMDKDELIKLWLAQGYIRPKE 398 (674)
Q Consensus 368 ----------------------~~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~ 398 (674)
.++..+|.++.|+++.|+++|+|||||+..+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 1233456689999999999999999998754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.45 E-value=1e-13 Score=166.50 Aligned_cols=177 Identities=24% Similarity=0.208 Sum_probs=93.3
Q ss_pred CceeEEEEEcCCcC-CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccC
Q 039885 472 EKLRHSMLMLGFEA-SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~ 549 (674)
.++++|++++|.+. .+|..+.++++|++|++++|. +.+.+|..+.++++|+.|+| ++|.+.+ +|..|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L-------~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--LVGQIPRELGQMKSLKWIYL-------GYNNLSGEIPYEIGG 234 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC--CcCcCChHHcCcCCccEEEC-------cCCccCCcCChhHhc
Confidence 34555555555432 344455555555555555554 44444555555555555555 5555443 5555555
Q ss_pred CCCCcceeecCCCCc-cccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhc
Q 039885 550 LIHLRFLQLRDLMID-ELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVL 628 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 628 (674)
+++|++|+|++|.+. .+|.+++++++|++|++++| ...+.+|..+.++++|++|++..|.+. +..+..+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~~p~~~ 304 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLS---------GEIPELV 304 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeec---------cCCChhH
Confidence 555555555555543 45555555555555555555 333455555555555555555444321 1222334
Q ss_pred cCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 629 GQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 629 ~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.++++|+ .|.+.++... +..+..+.++++|+.|+|++|+
T Consensus 305 ~~l~~L~-~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 305 IQLQNLE-ILHLFSNNFT----GKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred cCCCCCc-EEECCCCccC----CcCChhHhcCCCCCEEECcCCC
Confidence 4445555 5555443322 2233446667778888887764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=7.8e-15 Score=152.81 Aligned_cols=128 Identities=25% Similarity=0.282 Sum_probs=74.6
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
.++.||++.+|.+.++-..++.++.||++++..|+---.+ +|..+-.+..|.+||| ++|++.+.|..+..-+
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG-iP~diF~l~dLt~lDL-------ShNqL~EvP~~LE~AK 126 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG-IPTDIFRLKDLTILDL-------SHNQLREVPTNLEYAK 126 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC-CCchhcccccceeeec-------chhhhhhcchhhhhhc
Confidence 4556666666666555556666666666666655511223 3333555666666666 6666666666666666
Q ss_pred CCcceeecCCCCccccccc-cCCCcccEEEeccccccccccccccccCccCCeeeeeee
Q 039885 552 HLRFLQLRDLMIDELPETC-CELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVV 609 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~ 609 (674)
++-.|+||+|+|.++|.++ -+|..|-.|||++| .+..+|+.+..|.+|++|.+++|
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N--rLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN--RLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccc--hhhhcCHHHHHHhhhhhhhcCCC
Confidence 6666666666666666554 35555666666665 55666666666666666665433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.42 E-value=2.6e-13 Score=163.07 Aligned_cols=179 Identities=22% Similarity=0.241 Sum_probs=148.0
Q ss_pred CCCceeEEEEEcCCcC-CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccc
Q 039885 470 PKEKLRHSMLMLGFEA-SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i 547 (674)
....+++|++.+|.+. .+|..+.++++|+.|.+.+|. +.+.+|..+.++++|++|++ ++|.+.+ +|..+
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L-------~~n~l~~~~p~~l 256 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN--LSGEIPYEIGGLTSLNHLDL-------VYNNLTGPIPSSL 256 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc--cCCcCChhHhcCCCCCEEEC-------cCceeccccChhH
Confidence 3567899999998874 578889999999999999988 77778888999999999999 9999876 89999
Q ss_pred cCCCCCcceeecCCCCc-cccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChh
Q 039885 548 EKLIHLRFLQLRDLMID-ELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLE 626 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 626 (674)
+++++|++|+|++|.+. .+|.+++++++|++|++++| ...+.+|..+.++++|++|++..|.+. +..+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~---------~~~~~ 326 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFT---------GKIPV 326 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccC---------CcCCh
Confidence 99999999999999975 78999999999999999999 666788999999999999999777633 23344
Q ss_pred hccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 627 VLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 627 ~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+..+++|+ .|.+.++... +..+..+..+.+|+.|+|++|+
T Consensus 327 ~~~~l~~L~-~L~L~~n~l~----~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 327 ALTSLPRLQ-VLQLWSNKFS----GEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred hHhcCCCCC-EEECcCCCCc----CcCChHHhCCCCCcEEECCCCe
Confidence 566667777 7777765432 2344567788999999999875
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3.8e-15 Score=131.43 Aligned_cols=127 Identities=28% Similarity=0.357 Sum_probs=94.2
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc--ccccccC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE--IPKEIEK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~--lp~~i~~ 549 (674)
.++..+.+.+|.++.+|.+++.+++|+.|.+.-|. + ..+|..|++++-|.+||| ..|++.+ +|..|..
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnr--l-~~lprgfgs~p~levldl-------tynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR--L-NILPRGFGSFPALEVLDL-------TYNNLNENSLPGNFFY 125 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhh--h-hcCccccCCCchhhhhhc-------cccccccccCCcchhH
Confidence 34566667777777777777777777777776654 2 235666777777777777 7777665 7777777
Q ss_pred CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 550 LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
+..||-|.|+.|.+.-+|+.+++|++||.|.++.| .+-++|..++.|+.|+.|.+.+|.
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--chhhCcHHHHHHHHHHHHhcccce
Confidence 77777777778888888888888888888888887 577788888888888888886555
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-15 Score=130.35 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=131.6
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.+.+|.+++|.+..+|+.+..+.+|+.|.+++|. +.. +|..+++++.||.|++ +-|.+..+|..||.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq--ie~-lp~~issl~klr~lnv-------gmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ--IEE-LPTSISSLPKLRILNV-------GMNRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch--hhh-cChhhhhchhhhheec-------chhhhhcCccccCCC
Confidence 456788999999999999999999999999999998 766 6777999999999999 999999999999999
Q ss_pred CCCcceeecCCCCc--cccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhc
Q 039885 551 IHLRFLQLRDLMID--ELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVL 628 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 628 (674)
+-|..|||.+|++. .+|..+..+..|..|.|++| -..-+|..+++|++|+.|.+..|. .-..+.++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn--dfe~lp~dvg~lt~lqil~lrdnd----------ll~lpkei 169 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN--DFEILPPDVGKLTNLQILSLRDND----------LLSLPKEI 169 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC--CcccCChhhhhhcceeEEeeccCc----------hhhCcHHH
Confidence 99999999999976 89999999999999999999 688999999999999999996655 34455666
Q ss_pred cCcccCCCeeEEeccC
Q 039885 629 GQLRHLRGSLRIRGLG 644 (674)
Q Consensus 629 ~~L~~L~g~L~i~~l~ 644 (674)
+.|++|+ +|+|-+..
T Consensus 170 g~lt~lr-elhiqgnr 184 (264)
T KOG0617|consen 170 GDLTRLR-ELHIQGNR 184 (264)
T ss_pred HHHHHHH-HHhcccce
Confidence 6777777 67776543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.36 E-value=1.7e-14 Score=150.34 Aligned_cols=174 Identities=25% Similarity=0.241 Sum_probs=115.3
Q ss_pred eeEEEEEcCCcCCccccccCCCCceEEEecCCC------------------------cccccchhHhhccCCceeEEEec
Q 039885 474 LRHSMLMLGFEASFPDSLLNAKKLRSFLISSPY------------------------DVFSSVLPRLFDQLTCLRTLKIV 529 (674)
Q Consensus 474 ~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~------------------------~~~~~~~~~~~~~l~~Lr~L~L~ 529 (674)
+-.|.+++|.++.+|+.+..+.+|++|.+++|. .... .+|.++..+.+|+.+||
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~-N~Ptsld~l~NL~dvDl- 229 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD-NIPTSLDDLHNLRDVDL- 229 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh-cCCCchhhhhhhhhccc-
Confidence 344556666666666666666666666666554 1111 24556777777888888
Q ss_pred cccccccccccccccccccCCCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeee
Q 039885 530 AHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVV 609 (674)
Q Consensus 530 ~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~ 609 (674)
+.|++..+|+.+-++.+||.|+||+|.|++|.-.++.-.+|++|+++.| .+..+|..+.+|++|+.|++..|
T Consensus 230 ------S~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN--QLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 230 ------SENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN--QLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred ------cccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc--hhccchHHHhhhHHHHHHHhccC
Confidence 8888888888888888888888888888888777777888888888888 68888988999999988888665
Q ss_pred CccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 610 GITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
.+.- .+.|+.|+.|.+|..+. ...++|+.|. ..|+.|..|+.|.|++|
T Consensus 302 kL~F-----eGiPSGIGKL~~Levf~--aanN~LElVP-------EglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 302 KLTF-----EGIPSGIGKLIQLEVFH--AANNKLELVP-------EGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred cccc-----cCCccchhhhhhhHHHH--hhccccccCc-------hhhhhhHHHHHhccccc
Confidence 5332 12566666666665443 3333333332 33444444444444444
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.35 E-value=1.9e-10 Score=116.89 Aligned_cols=182 Identities=16% Similarity=0.078 Sum_probs=117.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHH----HHHHHHHHH
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELN----ALLLRINES 239 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~----~~~~~l~~~ 239 (674)
.+++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++..... .+.. .+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999864321 11 22333 334467788999999888665332 2222 233333332
Q ss_pred -cCCCeEEEEEeCCCCCChhhHHHHHHhhcCC---CCCcEEEEEcCChhHHhhcC----------CCCeEeCCCCChHhh
Q 039885 240 -IAREKFLLVLDDVWTEDYNKWESFRRCLING---QRGSKILVTTRKETVAGMME----------STDVISIKELSEREC 305 (674)
Q Consensus 240 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~IivTtR~~~va~~~~----------~~~~~~l~~L~~~~~ 305 (674)
..+++.+||+||+|......++.+....... .....|++|..... ...+. ....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 3678899999999987767777765432211 22234556654332 11111 134678999999999
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 306 WSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 306 ~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
.+++...+...+......-..+....|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764332211111234678889999999999999998765
No 11
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=6e-10 Score=133.25 Aligned_cols=196 Identities=18% Similarity=0.222 Sum_probs=125.9
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeC-CCCCHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVS-DPFDEYRIAKA 214 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~ 214 (674)
.+.+|-|+.-.+.+ .. ....+++.|+|++|.||||++...... ++.++|+++. .+.++..+...
T Consensus 13 ~~~~~~R~rl~~~l----~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKL----SG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHH----hc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 34567776444444 32 225689999999999999999987752 2368899996 45577778788
Q ss_pred HHHHhhCCCCC-------------cccHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhhHHHHHHh-hcCCCCCcEEEE
Q 039885 215 IIEALEGSATN-------------LVELNALLLRINESIA--REKFLLVLDDVWTEDYNKWESFRRC-LINGQRGSKILV 278 (674)
Q Consensus 215 il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~Iiv 278 (674)
++..+...... ..+...+...+-..+. +.+++|||||+...+......+..+ +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 88777522111 0122233333333332 6789999999977553444433333 444456678889
Q ss_pred EcCChhHH---hhcCCCCeEeCC----CCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039885 279 TTRKETVA---GMMESTDVISIK----ELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLR 351 (674)
Q Consensus 279 TtR~~~va---~~~~~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 351 (674)
|||...-. ..........+. +|+.+|+.++|....... .. .+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---IE----AAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---CC----HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99974211 111112345566 999999999997654211 11 23456799999999999999887765
Q ss_pred cC
Q 039885 352 FK 353 (674)
Q Consensus 352 ~~ 353 (674)
..
T Consensus 231 ~~ 232 (903)
T PRK04841 231 QN 232 (903)
T ss_pred hC
Confidence 43
No 12
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1.3e-10 Score=125.11 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=133.2
Q ss_pred cccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++.++||++++++|...|...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3456799999999999999853221 12345578999999999999999998533222123456777777778889999
Q ss_pred HHHHHhhCCC-C-CcccHHHHHHHHHHHcC--CCeEEEEEeCCCCCC----hhhHHHHHHhhcCCCCCcE--EEEEcCCh
Q 039885 214 AIIEALEGSA-T-NLVELNALLLRINESIA--REKFLLVLDDVWTED----YNKWESFRRCLINGQRGSK--ILVTTRKE 283 (674)
Q Consensus 214 ~il~~l~~~~-~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--IivTtR~~ 283 (674)
.|+.++.... + ...+.+++...+.+.+. ++..+||||+++... .+.+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 9999987622 1 22345666777777764 456899999997632 2233333332222 12333 55555544
Q ss_pred hHHhhcC-------CCCeEeCCCCChHhhHHHHHHHhhcC--CCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 284 TVAGMME-------STDVISIKELSERECWSLFERIAFFN--RPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 284 ~va~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
.+..... ....+.+.+++.++..+++...+-.. .....+..++.+++......|..+.|+..+-.
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3322211 12467899999999999998876322 11122334444444444445667777776643
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.24 E-value=5.7e-12 Score=131.12 Aligned_cols=183 Identities=23% Similarity=0.295 Sum_probs=133.6
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEK 549 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~ 549 (674)
.+++..+++..|.+..+|.......+|..|++..|. +..+-.+.++-++.||+||| +.|.|+++| +++..
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~--I~sv~se~L~~l~alrslDL-------SrN~is~i~~~sfp~ 171 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL--ISSVTSEELSALPALRSLDL-------SRNLISEIPKPSFPA 171 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccc--cccccHHHHHhHhhhhhhhh-------hhchhhcccCCCCCC
Confidence 456778888888888888766677778999998887 77766777888999999999 999999987 46767
Q ss_pred CCCCcceeecCCCCccccc-cccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhh
Q 039885 550 LIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEV 627 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 627 (674)
=.++++|+|++|.|+.+-. .+..|.+|.+|.|+.| .+..+|.- |.+|+.|+.|++..|.|.. . .+..+..
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN--rittLp~r~Fk~L~~L~~LdLnrN~iri----v--e~ltFqg 243 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN--RITTLPQRSFKRLPKLESLDLNRNRIRI----V--EGLTFQG 243 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccC--cccccCHHHhhhcchhhhhhccccceee----e--hhhhhcC
Confidence 7889999999999988764 5788889999999998 78888875 6779999999997776554 2 3445555
Q ss_pred ccCcccCCCeeEEeccCCCCC------------------hhhhhhccCCccCCCCeEEEeecC
Q 039885 628 LGQLRHLRGSLRIRGLGNVKD------------------VDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 628 L~~L~~L~g~L~i~~l~~~~~------------------~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
|.+|++|+ |.-++...+.+ ....-...|.+++.|+.|+||+|.
T Consensus 244 L~Sl~nlk--lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 244 LPSLQNLK--LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred chhhhhhh--hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 66665554 32222222211 111222446677777777777763
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.23 E-value=3.3e-13 Score=134.39 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=64.1
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
+++..++++.|.+..+| +|..++.|..|.+..|. +.-...+....+.+|.+||| ..|.++++|..++.|.
T Consensus 206 ~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~--i~~lpae~~~~L~~l~vLDL-------RdNklke~Pde~clLr 275 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ--IEMLPAEHLKHLNSLLVLDL-------RDNKLKEVPDEICLLR 275 (565)
T ss_pred hhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH--HHhhHHHHhcccccceeeec-------cccccccCchHHHHhh
Confidence 34444555555555555 55556666666555554 43333334456777777777 6777777777777777
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccc
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQR 584 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~ 584 (674)
+|.+||+|+|.|+.+|.++++| +|..|-+.||
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 7777777777777777777777 6777666665
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.22 E-value=6.6e-11 Score=117.40 Aligned_cols=194 Identities=22% Similarity=0.191 Sum_probs=100.5
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH---
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI--- 215 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--- 215 (674)
|+||+.|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+... ...+ ..+|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhh-hHHHHHHHH
Confidence 799999999999998743 346799999999999999999988431 1122 3344444333322 222222
Q ss_pred -------HHHhhCC----CC------CcccHHHHHHHHHHHc--CCCeEEEEEeCCCCCC------hhhHHHHHHhhcC-
Q 039885 216 -------IEALEGS----AT------NLVELNALLLRINESI--AREKFLLVLDDVWTED------YNKWESFRRCLIN- 269 (674)
Q Consensus 216 -------l~~l~~~----~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~- 269 (674)
...+... .. ...........+.+.+ .+++.+||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1112111 00 0111122222232333 2345999999986543 1222334444433
Q ss_pred --CCCCcEEEEEcCChhHHhh--------cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCC
Q 039885 270 --GQRGSKILVTTRKETVAGM--------MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGL 339 (674)
Q Consensus 270 --~~~gs~IivTtR~~~va~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 339 (674)
..+.+.|+++|. ..+... .+....+.+++|+.+++++++...+-.. . .- +.-.+...+|+..+||+
T Consensus 152 ~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 333444444444 433322 2234469999999999999999865333 1 11 11234457899999999
Q ss_pred hHHHHH
Q 039885 340 PLAVKT 345 (674)
Q Consensus 340 PLai~~ 345 (674)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 16
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=2.3e-09 Score=114.10 Aligned_cols=208 Identities=11% Similarity=0.095 Sum_probs=125.9
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc-ccc---ceEEEEEeCCCCCHHH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI-NHF---GKRIWVCVSDPFDEYR 210 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~ 210 (674)
.+..++||++++++|...|..... ......+.|+|++|+|||++++.++++.... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864221 1234568999999999999999998752110 111 1356788877778889
Q ss_pred HHHHHHHHhh---CCCC-CcccHHHHHHHHHHHc--CCCeEEEEEeCCCCCC---hhhHHHHHHhh-cCCC--CCcEEEE
Q 039885 211 IAKAIIEALE---GSAT-NLVELNALLLRINESI--AREKFLLVLDDVWTED---YNKWESFRRCL-INGQ--RGSKILV 278 (674)
Q Consensus 211 ~~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~Iiv 278 (674)
++..|++++. ...+ ...+..+....+.+.+ .+++++||||+++... .+....+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999984 2211 1223445555555555 3568899999997641 11122222210 1111 2233444
Q ss_pred EcCChhHHhhcC-------CCCeEeCCCCChHhhHHHHHHHhhcC-CCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 279 TTRKETVAGMME-------STDVISIKELSERECWSLFERIAFFN-RPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 279 TtR~~~va~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
++........+. ....+.+.+.+.++..+++..++-.. ....-.++..+...+++..+.|.|-.+.
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 444332211111 12468899999999999998886421 1111223444455667778889885543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=9.2e-11 Score=141.81 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=50.6
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc-cccccccccCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM-IREIPKEIEKLI 551 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~lp~~i~~L~ 551 (674)
+++.|.+.++.+..+|..+..+++|+.|+++++. ....+|. ++.+++|+.|+| ++|. +..+|.+|++|+
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~--~l~~ip~-ls~l~~Le~L~L-------~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK--NLKEIPD-LSMATNLETLKL-------SDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCC--CcCcCCc-cccCCcccEEEe-------cCCCCccccchhhhccC
Confidence 3344444444444444444444555555554433 1122232 444555555555 4443 444555555555
Q ss_pred CCcceeecCCC-CccccccccCCCcccEEEeccccccccccc
Q 039885 552 HLRFLQLRDLM-IDELPETCCELFNLQTLEIRQRGYYLRRLP 592 (674)
Q Consensus 552 ~Lr~L~L~~~~-i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP 592 (674)
+|++|++++|. ++.+|..+ ++++|++|++++| ..+..+|
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc-~~L~~~p 721 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC-SRLKSFP 721 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC-CCccccc
Confidence 55555555543 55555544 4555555555554 3333333
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=5.2e-12 Score=125.96 Aligned_cols=153 Identities=24% Similarity=0.272 Sum_probs=126.3
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
+-+..++++.|.+.++|..+..+..+.+..+.++. ..+++|..++.+++|..|+| ++|.+..+|..++.+.
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn--~isfv~~~l~~l~kLt~L~L-------~NN~Ln~LP~e~~~lv 458 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN--KISFVPLELSQLQKLTFLDL-------SNNLLNDLPEEMGSLV 458 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC--ccccchHHHHhhhcceeeec-------ccchhhhcchhhhhhh
Confidence 34778889999998999888888888776666665 56678888999999999999 9999999999999999
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
.||.|+++.|++..+|..+-.+.-|+++-.++| .++.+|.+ +.+|.+|..|++.+|. ....+..|++
T Consensus 459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n--qi~~vd~~~l~nm~nL~tLDL~nNd----------lq~IPp~Lgn 526 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNN--QIGSVDPSGLKNMRNLTTLDLQNND----------LQQIPPILGN 526 (565)
T ss_pred hhheecccccccccchHHHhhHHHHHHHHhccc--cccccChHHhhhhhhcceeccCCCc----------hhhCChhhcc
Confidence 999999999999999998888888888888877 68888665 8899999999986555 3445667777
Q ss_pred cccCCCeeEEeccCCC
Q 039885 631 LRHLRGSLRIRGLGNV 646 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~ 646 (674)
+++|+ .|.+.++..-
T Consensus 527 mtnL~-hLeL~gNpfr 541 (565)
T KOG0472|consen 527 MTNLR-HLELDGNPFR 541 (565)
T ss_pred cccee-EEEecCCccC
Confidence 77777 7888877654
No 19
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=9.7e-10 Score=102.70 Aligned_cols=143 Identities=17% Similarity=0.255 Sum_probs=89.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCCCCHH---HHHHHHHHHhhCCCCCcccHHHHHHHHH
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINH----FGKRIWVCVSDPFDEY---RIAKAIIEALEGSATNLVELNALLLRIN 237 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 237 (674)
+++.|+|.+|+||||+++.++........ +...+|++........ .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 57999999999999999999875333222 4566677766544332 333333333322211 1111 111
Q ss_pred H-HcCCCeEEEEEeCCCCCChh-------hHHHHHH-hhcC-CCCCcEEEEEcCChhH---HhhcCCCCeEeCCCCChHh
Q 039885 238 E-SIAREKFLLVLDDVWTEDYN-------KWESFRR-CLIN-GQRGSKILVTTRKETV---AGMMESTDVISIKELSERE 304 (674)
Q Consensus 238 ~-~l~~kr~LlVlDdv~~~~~~-------~~~~l~~-~l~~-~~~gs~IivTtR~~~v---a~~~~~~~~~~l~~L~~~~ 304 (674)
. .-+.++++||||++++.... .+..+.. .++. ..++.++|||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 22578999999999663321 2333333 3333 3568999999998765 3334455689999999999
Q ss_pred hHHHHHHHh
Q 039885 305 CWSLFERIA 313 (674)
Q Consensus 305 ~~~Lf~~~a 313 (674)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997753
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=9.9e-12 Score=129.25 Aligned_cols=170 Identities=20% Similarity=0.206 Sum_probs=137.5
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIH 552 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~ 552 (674)
......++.|.+..+|..++.+-.|.++.++.|. +.. +|..+.++..|.+||| +.|.++.+|..++.|.
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~--~r~-ip~~i~~L~~lt~l~l-------s~NqlS~lp~~lC~lp- 144 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC--IRT-IPEAICNLEALTFLDL-------SSNQLSHLPDGLCDLP- 144 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc--cee-cchhhhhhhHHHHhhh-------ccchhhcCChhhhcCc-
Confidence 3445677788888888888888888888888887 554 5777889999999999 8999999999998886
Q ss_pred CcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcc
Q 039885 553 LRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLR 632 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 632 (674)
|+.|-+++|+++.+|+.|+-+..|..||.+.| .+..+|..++.|.+|+.|.+..|. ....+++|..|.
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n--ei~slpsql~~l~slr~l~vrRn~----------l~~lp~El~~Lp 212 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN--EIQSLPSQLGYLTSLRDLNVRRNH----------LEDLPEELCSLP 212 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhh--hhhhchHHhhhHHHHHHHHHhhhh----------hhhCCHHHhCCc
Confidence 89999999999999999998889999999988 688899999999999999886554 445677777776
Q ss_pred cCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 633 HLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 633 ~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
|. +|+++++ ..-.++..+.++++|+.|.|.+|.
T Consensus 213 -Li-~lDfScN-----kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 -LI-RLDFSCN-----KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred -ee-eeecccC-----ceeecchhhhhhhhheeeeeccCC
Confidence 44 4777654 233467888999999999998885
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=7.4e-11 Score=123.00 Aligned_cols=173 Identities=23% Similarity=0.270 Sum_probs=105.6
Q ss_pred ceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cccCC
Q 039885 473 KLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIEKL 550 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~~L 550 (674)
.+|.++++.|.+..+|. .+..-.++..|++++|. +...-...|.+|.+|.+|.| +.|.++.+|. .|.+|
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~--It~l~~~~F~~lnsL~tlkL-------srNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR--ITTLETGHFDSLNSLLTLKL-------SRNRITTLPQRSFKRL 220 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeecccc--ccccccccccccchheeeec-------ccCcccccCHHHhhhc
Confidence 45555566555554442 33444556666666665 54444455666667777777 7777777664 34457
Q ss_pred CCCcceeecCCCCccc-cccccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhhc
Q 039885 551 IHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVL 628 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 628 (674)
++|+.|+|..|+|... -..+..|.+|+.|.|..| .+..+-++ |..|.+++||++..|.+.. . .. +.|
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN--~I~kL~DG~Fy~l~kme~l~L~~N~l~~----v--n~---g~l 289 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN--DISKLDDGAFYGLEKMEHLNLETNRLQA----V--NE---GWL 289 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhc--CcccccCcceeeecccceeecccchhhh----h--hc---ccc
Confidence 7777777777776544 335667777777777776 56677665 7778888888886666433 1 11 223
Q ss_pred cCcccCCCeeEEecc--CCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 629 GQLRHLRGSLRIRGL--GNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 629 ~~L~~L~g~L~i~~l--~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
-+|+.|+ .|+++.+ +.+. .....-+++|++|+|++|+
T Consensus 290 fgLt~L~-~L~lS~NaI~rih------~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 290 FGLTSLE-QLDLSYNAIQRIH------IDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred cccchhh-hhccchhhhheee------cchhhhcccceeEeccccc
Confidence 4444444 4544443 2222 2345667899999999986
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=3.6e-11 Score=131.76 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=85.8
Q ss_pred ccccccc-ccccccCCCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccC
Q 039885 536 SRGMIRE-IPKEIEKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 536 ~~~~l~~-lp~~i~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~ 613 (674)
.+|.++. .-+-+.+.+||+.|+|++|++.++|.+ +.+|..|+.|+|+|| .+..||..+.++..|++|..-.|.
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN--kL~~Lp~tva~~~~L~tL~ahsN~--- 441 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN--KLTTLPDTVANLGRLHTLRAHSNQ--- 441 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc--hhhhhhHHHHhhhhhHHHhhcCCc---
Confidence 3444444 223467788999999999999999985 688999999999999 799999999999999999885444
Q ss_pred CCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecCC
Q 039885 614 SRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDKE 673 (674)
Q Consensus 614 ~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~~ 673 (674)
.-..+ ++..|.+|+ .++++.+.--. .+.+..+ ..++|++|+|++|..
T Consensus 442 -------l~~fP-e~~~l~qL~-~lDlS~N~L~~---~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 442 -------LLSFP-ELAQLPQLK-VLDLSCNNLSE---VTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -------eeech-hhhhcCcce-EEecccchhhh---hhhhhhC-CCcccceeeccCCcc
Confidence 22233 777778777 77776543211 1111222 237899999999874
No 23
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.96 E-value=5.8e-09 Score=105.40 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=106.2
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
...+++|.+..+.++++ ...+.-..+||++|+||||||+.+... ....|. .+|...+-..
T Consensus 28 GQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~-----~~sAv~~gvk---- 87 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFE-----ALSAVTSGVK---- 87 (436)
T ss_pred ChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCceE-----EeccccccHH----
Confidence 33455665555555554 346677889999999999999999873 334442 3333222222
Q ss_pred HHHHhhCCCCCcccHHHHHHHH-HHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE--EcCChh---HHhh
Q 039885 215 IIEALEGSATNLVELNALLLRI-NESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV--TTRKET---VAGM 288 (674)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~---va~~ 288 (674)
++....+.- +....+++.+|++|.|...+..+.+.| ||.-.+|.-|+| ||.++. ....
T Consensus 88 -------------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 88 -------------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred -------------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 222333333 223458999999999988776666655 444456777776 566553 1222
Q ss_pred cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCC--hhhH-HHHHHHHHHHcCCChHHHH
Q 039885 289 MESTDVISIKELSERECWSLFERIAFFNRPSLE--CEQL-EEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 289 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~--~~~l-~~~~~~I~~~c~GlPLai~ 344 (674)
.+...++.+++|+.++-..++.+.+......-. ...+ ++.-..|+..++|---++-
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 344679999999999999999884322221111 0111 3345567888888765443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.92 E-value=1.8e-09 Score=122.64 Aligned_cols=119 Identities=22% Similarity=0.312 Sum_probs=82.0
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
.++.++.|.+++|.+..+|..+. ++|++|++++|. +.. +|..+. .+|+.|+| ++|.+..+|..+.
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~--Lts-LP~~l~--~~L~~L~L-------s~N~L~~LP~~l~- 261 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ--LTS-IPATLP--DTIQEMEL-------SINRITELPERLP- 261 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc--ccc-CChhhh--ccccEEEC-------cCCccCcCChhHh-
Confidence 34567888888888887776554 578888888876 554 344332 36788888 7887777777664
Q ss_pred CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 550 LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
.+|++|+|++|+++.+|..+. .+|++|++++| .+..+|..+. .+|++|++..|.
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N--~Lt~LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDN--SIRTLPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCC--ccccCcccch--hhHHHHHhcCCc
Confidence 467888888888877777664 47888888877 5666765543 355666665544
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=1.3e-08 Score=105.29 Aligned_cols=194 Identities=17% Similarity=0.130 Sum_probs=104.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+|||++..+++|..++...... ......+.++|++|+|||+||+.+++... ..+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHH
Confidence 36999999999999888632210 12345688999999999999999988532 122 1122111111111 22222
Q ss_pred HHhhCCCC-CcccH----HHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhcC-
Q 039885 217 EALEGSAT-NLVEL----NALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGMME- 290 (674)
Q Consensus 217 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~- 290 (674)
..+..... -.++. ....+.+...+.+.+..+|+|+..... .+. .. ..+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ec---CCCeEEEEecCCccccCHHHHh
Confidence 22211100 00000 111223333444444444444442211 110 01 112445556777644333211
Q ss_pred -CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039885 291 -STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSL 349 (674)
Q Consensus 291 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 349 (674)
....+++++++.++..+++.+.+...+...+ .+....|++.|+|.|-.+..++..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHH
Confidence 1346899999999999999988754332222 345567999999999776655543
No 26
>PRK06893 DNA replication initiation factor; Validated
Probab=98.90 E-value=3.7e-08 Score=96.98 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=97.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
.+.+.|+|++|+|||+||+.+++.. ......+.|+.+... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 3578999999999999999999852 222334566665310 00000 1111122 2
Q ss_pred eEEEEEeCCCCCC-hhhHHH-HHHhhcCC-CCCcEEEE-EcCC---------hhHHhhcCCCCeEeCCCCChHhhHHHHH
Q 039885 244 KFLLVLDDVWTED-YNKWES-FRRCLING-QRGSKILV-TTRK---------ETVAGMMESTDVISIKELSERECWSLFE 310 (674)
Q Consensus 244 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~Iiv-TtR~---------~~va~~~~~~~~~~l~~L~~~~~~~Lf~ 310 (674)
.-+|||||+|... ...|.. +...+... ..|..+|| |+.. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 245653 43434322 24556654 4443 3455555556789999999999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 311 RIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 311 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
+.++..+-..+ +++..-|++.+.|..-++..+-..|
T Consensus 172 ~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIELS----DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99875543222 4556679999998887766554433
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.89 E-value=1.9e-08 Score=104.90 Aligned_cols=180 Identities=20% Similarity=0.169 Sum_probs=102.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+|+|++..++.+..++...... ......+.|+|++|+||||||+.+++... ..+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHHH
Confidence 46999999999998887532110 22456788999999999999999988532 211 112211 111112222222
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcC-------------------CCCCcEEE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLIN-------------------GQRGSKIL 277 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~Ii 277 (674)
..+. +.-+|++||+........+.+...+.. ..+.+-|.
T Consensus 98 ~~l~----------------------~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 98 TNLE----------------------EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred Hhcc----------------------cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 2221 233555555543221111112111110 01234455
Q ss_pred EEcCChhHHhhcC--CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039885 278 VTTRKETVAGMME--STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSL 349 (674)
Q Consensus 278 vTtR~~~va~~~~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 349 (674)
.|++...+...+. ....+++++++.++..+++.+.+...+...+ .+....|++.|+|.|-.+..+...
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHH
Confidence 6666544332221 1346899999999999999988765433222 345778999999999766555543
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.85 E-value=1.9e-09 Score=122.38 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=61.2
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIH 552 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~ 552 (674)
.++.|.+++|.+..+|..+. ++|+.|++++|. +.. +|..+. .+|+.|++ ++|.++.+|..+. .+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~--Lt~-LP~~lp--~sL~~L~L-------s~N~Lt~LP~~l~--~s 326 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNS--IRT-LPAHLP--SGITHLNV-------QSNSLTALPETLP--PG 326 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCc--ccc-Ccccch--hhHHHHHh-------cCCccccCCcccc--cc
Confidence 45566666666555554433 356666666655 433 222221 24555555 5555555554432 45
Q ss_pred CcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 553 LRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
|++|++++|.++.+|.++. ++|+.|++++| .+..+|..+. ++|++|++..|.
T Consensus 327 L~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N--~L~~LP~~lp--~~L~~LdLs~N~ 378 (754)
T PRK15370 327 LKTLEAGENALTSLPASLP--PELQVLDVSKN--QITVLPETLP--PTITTLDVSRNA 378 (754)
T ss_pred ceeccccCCccccCChhhc--CcccEEECCCC--CCCcCChhhc--CCcCEEECCCCc
Confidence 5666666666655655543 45666666665 3455555442 455666654444
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=4.6e-10 Score=123.31 Aligned_cols=154 Identities=22% Similarity=0.285 Sum_probs=115.2
Q ss_pred CCCceeEEEEEcCCcCCccccccC--------------------------CCCceEEEecCCCcccccchhHhhccCCce
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLN--------------------------AKKLRSFLISSPYDVFSSVLPRLFDQLTCL 523 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~--------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 523 (674)
....+++|+++.|.+..+|+.+-. ++.|..|.+.+|. +....-+.+.++++|
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccce
Confidence 456789999999998877754321 1122333333443 322222347899999
Q ss_pred eEEEeccccccccccccccccc-cccCCCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCC
Q 039885 524 RTLKIVAHDRRWSRGMIREIPK-EIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLR 602 (674)
Q Consensus 524 r~L~L~~~~~~~~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~ 602 (674)
|+|+| ++|.+..+|. .+.+|..|+.|+||+|+++.||.++.++..|++|...+| .+..+| .+..++.|+
T Consensus 386 KVLhL-------syNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 386 KVLHL-------SYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLK 455 (1081)
T ss_pred eeeee-------cccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcce
Confidence 99999 9999999995 577999999999999999999999999999999999998 789999 799999999
Q ss_pred eeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCC
Q 039885 603 HLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGN 645 (674)
Q Consensus 603 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~ 645 (674)
.+|++.|.++. ......++. ++|+ .|+++++..
T Consensus 456 ~lDlS~N~L~~--------~~l~~~~p~-p~Lk-yLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSE--------VTLPEALPS-PNLK-YLDLSGNTR 488 (1081)
T ss_pred EEecccchhhh--------hhhhhhCCC-cccc-eeeccCCcc
Confidence 99998777433 112222222 5677 788888765
No 30
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.82 E-value=6.9e-08 Score=103.84 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=107.5
Q ss_pred CceeechhhHHH---HHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKST---LKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
.++||.+..+.. +..++... ....+.++|++|+||||||+.+++.. ...| +.++....-..-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHH
Confidence 368888877555 77766532 44568889999999999999998742 2222 22222111111112
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE--EcCChh--HH-h
Q 039885 214 AIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV--TTRKET--VA-G 287 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~--va-~ 287 (674)
.++ +..... ..+++.+|++|+++.......+.+...+.. |..++| ||.+.. +. .
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222 222111 246788999999988766666666665543 444554 344332 11 1
Q ss_pred hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039885 288 MMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSL 349 (674)
Q Consensus 288 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 349 (674)
.......+.+.+++.++...++.+.+....... ..--.+....|++.|+|.|..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 122246899999999999999988653211100 0112345667899999999877655443
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=1.7e-08 Score=114.19 Aligned_cols=34 Identities=21% Similarity=0.006 Sum_probs=22.2
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPY 506 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~ 506 (674)
.+++++.|.+++|.+..+|.. .++|+.|++++|.
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 456778888888877766632 3456666666654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=4.1e-09 Score=97.75 Aligned_cols=123 Identities=24% Similarity=0.225 Sum_probs=39.2
Q ss_pred CceeEEEEEcCCcCCcccccc-CCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc-C
Q 039885 472 EKLRHSMLMLGFEASFPDSLL-NAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE-K 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~-~ 549 (674)
...|.|++.+|.+..+. .+. .+.+|+.|++++|. +.. ++. +..++.|+.|++ ++|.++.+++.+. .
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~--I~~-l~~-l~~L~~L~~L~L-------~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ--ITK-LEG-LPGLPRLKTLDL-------SNNRISSISEGLDKN 86 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS----S---TT-----TT--EEE---------SS---S-CHHHHHH
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCC--Ccc-ccC-ccChhhhhhccc-------CCCCCCccccchHHh
Confidence 34566777776665543 333 45666666766666 443 222 556666667776 6666666654442 4
Q ss_pred CCCCcceeecCCCCccccc--cccCCCcccEEEecccccccccccc----ccccCccCCeeeeee
Q 039885 550 LIHLRFLQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRRLPH----GFGRLVNLRHLSEFV 608 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP~----~i~~L~~L~~L~l~~ 608 (674)
+++|+.|.|++|+|..+-+ .+..+++|++|++.+| .+...|. -+..+++|+.||...
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N--Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN--PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT---GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC--cccchhhHHHHHHHHcChhheeCCEE
Confidence 6666677776666654432 3455666666666666 3444443 255666666666533
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.79 E-value=2.2e-07 Score=103.16 Aligned_cols=213 Identities=11% Similarity=0.047 Sum_probs=125.3
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc---ccccc--eEEEEEeCCCCCHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV---INHFG--KRIWVCVSDPFDEYR 210 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 210 (674)
+..+.||++|+++|...|...-.+ .....++.|+|++|.|||+.++.|.+.... ....+ .+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 457899999999999988643211 123357889999999999999999864211 11222 356777777778889
Q ss_pred HHHHHHHHhhCCCC-CcccHHHHHHHHHHHcC---CCeEEEEEeCCCCCChhhHHHHHHhhcC-CCCCcEEEE--EcCCh
Q 039885 211 IAKAIIEALEGSAT-NLVELNALLLRINESIA---REKFLLVLDDVWTEDYNKWESFRRCLIN-GQRGSKILV--TTRKE 283 (674)
Q Consensus 211 ~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~Iiv--TtR~~ 283 (674)
++..|.+++....+ ......+....+...+. ....+||||+++......-+.|...+.. ...+++|++ +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999854432 22233344444444442 2345899999965332122223333322 224555544 33221
Q ss_pred --------hHHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 284 --------TVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 284 --------~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
.+...++ ...+...|.+.++-.+++..++-.......+..++-+|+.++...|-.=.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1222222 22467799999999999999876432222334444445544444444555555554433
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=4e-09 Score=109.97 Aligned_cols=63 Identities=22% Similarity=0.161 Sum_probs=28.1
Q ss_pred ccccCCCCCcceeecCCCCc-----cccccccCCCcccEEEeccccccc----cccccccccCccCCeeeeee
Q 039885 545 KEIEKLIHLRFLQLRDLMID-----ELPETCCELFNLQTLEIRQRGYYL----RRLPHGFGRLVNLRHLSEFV 608 (674)
Q Consensus 545 ~~i~~L~~Lr~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~~~----~~lP~~i~~L~~L~~L~l~~ 608 (674)
..+..+.+|++|++++|.++ .++..+..+++|+.|++++| ... ..++..+..+++|++|++..
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCC
Confidence 33444445555555555543 23333444445555555554 111 12233344445555555543
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.77 E-value=5.1e-07 Score=99.56 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=166.0
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKA 214 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~ 214 (674)
+.+.|-|..- .+.|.. ..+.+++.|..++|.|||||+-..... ...=..+.|.+.+. +.++..+...
T Consensus 18 ~~~~v~R~rL----~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPRL----LDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHHH----HHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHH
Confidence 4456666544 444443 337899999999999999999888651 12234688999875 5578899999
Q ss_pred HHHHhhCCCCC-------------cccHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhhH-HHHHHhhcCCCCCcEEEE
Q 039885 215 IIEALEGSATN-------------LVELNALLLRINESIA--REKFLLVLDDVWTEDYNKW-ESFRRCLINGQRGSKILV 278 (674)
Q Consensus 215 il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~-~~l~~~l~~~~~gs~Iiv 278 (674)
++..+..-.++ ..+...+...+...+. .++..+||||..-...... ..+...+.....+-..||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 99988754332 2333444444544443 3678999999865332333 335555556778889999
Q ss_pred EcCChh---HHhhcCCCCeEe----CCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039885 279 TTRKET---VAGMMESTDVIS----IKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLR 351 (674)
Q Consensus 279 TtR~~~---va~~~~~~~~~~----l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 351 (674)
|||+.. +++.--.....+ .=.++.+|+-++|....... -+ ..-.+.+.+..+|-+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999874 222111112222 22468899999998754111 11 22356699999999999999988887
Q ss_pred cCCChHHHHHHHh------------hhccccccccCCcccChhhHHHHHHHhccccCCC-CccHHHHHHHHHHHHHHcCC
Q 039885 352 FKRSLRVWQSILD------------SQMWQLEEFERDYRMDKDELIKLWLAQGYIRPKE-NKELEMIGEEYFDYLATRSF 418 (674)
Q Consensus 352 ~~~~~~~w~~~l~------------~~~~~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~-~~~~e~~~~~~~~~Lv~rsl 418 (674)
.+.+.+.-...+. .-...++... ++-|...=+.+-|-..-- .-+-++-|...+++|.++++
T Consensus 239 ~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l------~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gL 312 (894)
T COG2909 239 NNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPEL------RDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGL 312 (894)
T ss_pred CCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHH------HHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCC
Confidence 4443333222221 1111111110 111111111111110000 00123345677999999997
Q ss_pred Ccc-cccCCCCCeeeeEEeChHHHHHHHHhh
Q 039885 419 FQE-FETDDYDGLVVSCKMHDIVHDFAQYLT 448 (674)
Q Consensus 419 l~~-~~~~~~~~~~~~~~mHdlv~d~~~~~s 448 (674)
|-. .+... . .|+.|.++.||.+.--
T Consensus 313 Fl~~Ldd~~--~---WfryH~LFaeFL~~r~ 338 (894)
T COG2909 313 FLQRLDDEG--Q---WFRYHHLFAEFLRQRL 338 (894)
T ss_pred ceeeecCCC--c---eeehhHHHHHHHHhhh
Confidence 753 33221 1 8999999999986543
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=3.6e-09 Score=110.34 Aligned_cols=185 Identities=21% Similarity=0.226 Sum_probs=123.2
Q ss_pred CCceeEEEEEcCCcCC-------ccccccCCCCceEEEecCCCcccccchhHhhccCCc---eeEEEecccccccccccc
Q 039885 471 KEKLRHSMLMLGFEAS-------FPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTC---LRTLKIVAHDRRWSRGMI 540 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~-------~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~---Lr~L~L~~~~~~~~~~~l 540 (674)
.+.++++.+..+.... ++..+..+++|+.|+++++. +....+..+..+.. |+.|++ ++|.+
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~~~~L~~L~l-------s~~~~ 120 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA--LGPDGCGVLESLLRSSSLQELKL-------NNNGL 120 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC--CChhHHHHHHHHhccCcccEEEe-------eCCcc
Confidence 3457888888776542 33456778899999999887 54444555555554 999999 88877
Q ss_pred cc-----ccccccCC-CCCcceeecCCCCc-----cccccccCCCcccEEEeccccccc----cccccccccCccCCeee
Q 039885 541 RE-----IPKEIEKL-IHLRFLQLRDLMID-----ELPETCCELFNLQTLEIRQRGYYL----RRLPHGFGRLVNLRHLS 605 (674)
Q Consensus 541 ~~-----lp~~i~~L-~~Lr~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~~~----~~lP~~i~~L~~L~~L~ 605 (674)
.. ++..+..+ .+|+.|+|++|.++ .++..+..+.+|++|++++| ... ..++..+..+++|++|+
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEe
Confidence 62 44567777 89999999999977 45666778889999999998 322 13555667778999999
Q ss_pred eeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCC-hhhhhhccC-CccCCCCeEEEeecC
Q 039885 606 EFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKD-VDEAKSAGL-ENKMNLLHLGLGFDK 672 (674)
Q Consensus 606 l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~-~~~~~~~~L-~~~~~L~~L~L~~~~ 672 (674)
+..+.+.. . ........+..+++|+ .|.+++... .+ ........+ .....|++|++++|.
T Consensus 200 L~~n~i~~----~-~~~~l~~~~~~~~~L~-~L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 200 LNNNGLTD----E-GASALAETLASLKSLE-VLNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCccCh----H-HHHHHHHHhcccCCCC-EEecCCCcC-chHHHHHHHHHHhccCCCceEEEccCCC
Confidence 97766433 1 0111233455677788 788887532 22 111111111 134789999998874
No 37
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.73 E-value=3.7e-08 Score=88.07 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=81.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc---cccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI---NHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES 239 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 239 (674)
.-+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999998742110 003456699998888999999999999988766655667777777777
Q ss_pred cCCC-eEEEEEeCCCCC-ChhhHHHHHHhhcCCCCCcEEEEEcCC
Q 039885 240 IARE-KFLLVLDDVWTE-DYNKWESFRRCLINGQRGSKILVTTRK 282 (674)
Q Consensus 240 l~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IivTtR~ 282 (674)
+... ..+||+||++.- ....++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7544 469999999765 5455555644433 566777777654
No 38
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=9.6e-07 Score=93.26 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=112.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccc-------------------cceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINH-------------------FGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 197 (674)
.+++|-+..++.+...+.... -...+.++|+.|+||||+|+.+.+...-... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999887432 3456789999999999999999764211000 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
.++..+.... ..+..++.+.+... ..+++-++|+|++.......++.+...+.......++
T Consensus 91 ~~~~~~~~~~------------------v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTK------------------VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCC------------------HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1111111011 11112222221111 1345569999999887766788888887766666777
Q ss_pred EEEcCCh-hHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 277 LVTTRKE-TVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 277 ivTtR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
|++|.+. .+... .+....+++.+++.++..+.+...+...+...+ ++....|++.++|.|-.+...
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7766543 33222 222468999999999999888876644332121 344566899999988654443
No 39
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=2.3e-07 Score=91.62 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=100.6
Q ss_pred hhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 039885 143 VEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGS 222 (674)
Q Consensus 143 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 222 (674)
+..++.+..++.. .....+.|+|++|+|||+||+.+++... ......++++++.-. ...
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~------~~~------- 81 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA------QAD------- 81 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH------HhH-------
Confidence 4466677776542 2346789999999999999999987422 223344555544311 000
Q ss_pred CCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChh-h-HHHHHHhhcC-CCCCcEEEEEcCChh---------HHhhcC
Q 039885 223 ATNLVELNALLLRINESIAREKFLLVLDDVWTEDYN-K-WESFRRCLIN-GQRGSKILVTTRKET---------VAGMME 290 (674)
Q Consensus 223 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~ 290 (674)
. .+...+.+ .-+|||||++..... . .+.+...+.. ...+.++|+||+... +...+.
T Consensus 82 -------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 0 01111222 238999999764322 2 3335444432 123457889887532 122222
Q ss_pred CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039885 291 STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSL 349 (674)
Q Consensus 291 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 349 (674)
....+++.++++++...++...+-..+.... .+..+.|++.+.|.|..+..+...
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 2457999999999999999876533222111 344566888899999888766443
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=8.5e-07 Score=91.91 Aligned_cols=180 Identities=14% Similarity=0.188 Sum_probs=119.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC----cccccccceEEEEEe-CCCCCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND----NDVINHFGKRIWVCV-SDPFDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~ 211 (674)
.+++|-+..++.+..++.... -.....++|+.|+||||+|+.++.. .....|+|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 368898888999999986432 3457789999999999999988762 123356676656442 22223322
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHH-h-hc
Q 039885 212 AKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVA-G-MM 289 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va-~-~~ 289 (674)
.+++.+.+... -..+++=++|+|+++..+...++.+...+.....++.+|++|.+.... . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22233322211 123566678888887777788999999998878889998888655321 1 11
Q ss_pred CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 290 ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 290 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+....+++.++++++....+.+... .. . .+.+..++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~-~~---~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN-DI---K----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc-CC---C----HHHHHHHHHHcCCCHHHHHHH
Confidence 2346899999999999887765431 11 1 223566889999999766544
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=5.1e-09 Score=97.11 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=42.4
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhc-cCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccc
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFD-QLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPE 568 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~ 568 (674)
.+.+..+++.|++.++. +.. +.. ++ .+.+|++|+| ++|.++.++ .+..|++|+.|++++|.|+++++
T Consensus 14 ~~~n~~~~~~L~L~~n~--I~~-Ie~-L~~~l~~L~~L~L-------s~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ--IST-IEN-LGATLDKLEVLDL-------SNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------S---TT-TT--EEE--------TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccc--ccc-ccc-hhhhhcCCCEEEC-------CCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 34556678999999988 544 222 44 5788999999 999998876 58889999999999999999977
Q ss_pred cc-cCCCcccEEEecccccccccccc--ccccCccCCeeeeeeeCccC
Q 039885 569 TC-CELFNLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 569 ~i-~~L~~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~ 613 (674)
.+ ..+++|+.|++++| .+..+-. .+..+++|++|++..|.+..
T Consensus 82 ~l~~~lp~L~~L~L~~N--~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN--KISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHHH-TT--EEE-TTS-----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred chHHhCCcCCEEECcCC--cCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 66 46899999999998 5666533 46788999999997777554
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.1e-07 Score=103.59 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=116.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|-+..++.|..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|.|.+... +......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 368999988888888887532 34567999999999999999987743211222223333322100 000000000
Q ss_pred HHhhCC-CCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC-ChhHHhhc-CCC
Q 039885 217 EALEGS-ATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTR-KETVAGMM-EST 292 (674)
Q Consensus 217 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR-~~~va~~~-~~~ 292 (674)
..+... .....+..++.+.+.. -+.+++-++|+|+++......++.+...+......+.+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0111122233222222 1235667999999988777788888888876555556555554 33332222 234
Q ss_pred CeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 293 DVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 293 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
..+++.+++.++....+.+.+-..+.... .+....|++.++|.+--+.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 58999999999999999887754443222 3456669999999996553
No 43
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.69 E-value=6.1e-07 Score=94.38 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=111.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCH-HHHHH-
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDE-YRIAK- 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~- 213 (674)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46899999999999988643 334578999999999999999877421 11222 1234443321100 00000
Q ss_pred --HHHHHhhCC-CCCcccHHHHHHHHH---HHc--CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-
Q 039885 214 --AIIEALEGS-ATNLVELNALLLRIN---ESI--AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET- 284 (674)
Q Consensus 214 --~il~~l~~~-~~~~~~~~~~~~~l~---~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~- 284 (674)
......... .......+.....++ ... .+.+-+||+||+..........+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000011111222121 211 23455899999976654555666666655445567887775432
Q ss_pred HHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 285 VAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 285 va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+...+ .....+.+.+++.++...++...+...+.... .+....+++.++|.+-.+....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 21111 22357889999999999998887654433222 3456668889998876655443
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.69 E-value=1.3e-07 Score=106.96 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc-
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE- 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~- 548 (674)
.+..++.|.+..|.+..+|. .+++|++|++++|. +.. +|.. .++|+.|++ ++|.+..+|....
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~--Lts-LP~l---p~sL~~L~L-------s~N~L~~Lp~lp~~ 283 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ--LTS-LPVL---PPGLLELSI-------FSNPLTHLPALPSG 283 (788)
T ss_pred hhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCc--cCc-ccCc---ccccceeec-------cCCchhhhhhchhh
Confidence 34578999999999988885 35899999999997 554 3332 234555555 4444444332110
Q ss_pred ----------------CCCCCcceeecCCCCccccc
Q 039885 549 ----------------KLIHLRFLQLRDLMIDELPE 568 (674)
Q Consensus 549 ----------------~L~~Lr~L~L~~~~i~~lP~ 568 (674)
.+++|++|+|++|.++.+|.
T Consensus 284 L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred cCEEECcCCccccccccccccceeECCCCccccCCC
Confidence 12456666666666665554
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1e-06 Score=96.52 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=115.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc-------------------ccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN-------------------HFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 197 (674)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .|.-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 469999999999999997432 346789999999999999998876321100 11111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+.+..+.... ..+..++...+.. ...++.-++|+|++...+...++.+...+.....+.++
T Consensus 90 iEIDAAs~~~------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDAASRTK------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecccccCC------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 1111111111 1122222222211 12356678999999887777888888888766566777
Q ss_pred EEEcCCh-hHH-hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 277 LVTTRKE-TVA-GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 277 ivTtR~~-~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
|++|.+. .+. ........+++++++.++....+.+.+-..+.... .+....|++.++|.+-.+..+
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7776643 222 22233568999999999999988877654433222 234456889999988555443
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1e-06 Score=99.32 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=115.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccc-------------------cceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINH-------------------FGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 197 (674)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-... |.-.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 469999999999999887432 3445689999999999999999874211111 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+++..+.. ....+++++.+.+.. ...+++-++|||++.......++.|...+-......++
T Consensus 91 iEidAas~------------------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASR------------------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccc------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 11211110 111222333333221 12467779999999988888888888888765556666
Q ss_pred EEEcCC-hhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 277 LVTTRK-ETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 277 ivTtR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
|++|.+ ..+... ......|++++|+.++....+.+.+-..+... -.+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 665544 433322 22346899999999999999887654322211 1344566999999998655544
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=1.5e-09 Score=113.32 Aligned_cols=126 Identities=27% Similarity=0.388 Sum_probs=94.9
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
...+..++++.|.+..+|..++.++ |+.|.+++|. +.. +|..++.+..|..||. +.|.+..+|..+++|
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk--l~~-lp~~ig~~~tl~~ld~-------s~nei~slpsql~~l 188 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK--LTS-LPEEIGLLPTLAHLDV-------SKNEIQSLPSQLGYL 188 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc--ccc-CCcccccchhHHHhhh-------hhhhhhhchHHhhhH
Confidence 3456677777777777777777654 6777777776 444 4555777777888888 788888888888888
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
..||.|+++.|.+..+|+.++.|+ |..||++.| .+..||-.|.+|+.|++|-+-+|.
T Consensus 189 ~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN--kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN--KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC--ceeecchhhhhhhhheeeeeccCC
Confidence 888888888888888888888654 778888877 688888888888888888885555
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.2e-06 Score=97.02 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=113.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc-------------------ccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN-------------------HFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 197 (674)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-.. .|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 469999999999999987432 345667999999999999997766321111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
++++.+....+ .++.++.+.+... ..++.-++|||+++......|+.+...+-......++
T Consensus 91 iEIDAas~rgV------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGV------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccH------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 22222111111 1122222222111 2345568999999988777889888888766667787
Q ss_pred EEEcCChh-HHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHH
Q 039885 277 LVTTRKET-VAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKT 345 (674)
Q Consensus 277 ivTtR~~~-va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~ 345 (674)
|+||.+.. +... .+-...+.++.++.++..+.+.+.+...+.... .+....|++.++|..- |+..
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 77776543 3222 223458999999999999999887644332222 3445668999998764 4444
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=6.5e-07 Score=84.96 Aligned_cols=181 Identities=20% Similarity=0.271 Sum_probs=101.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+|||-+.-++.+.-++..... ..+.+.-+.+||++|+||||||+-+.++ ....|. +.+.+. ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh---------
Confidence 4799999888876655542110 0336778999999999999999999984 333442 222211 00
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC------CCC-------------cEEE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING------QRG-------------SKIL 277 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~g-------------s~Ii 277 (674)
...++...+.. + +++.+|.+|+++..+...-+.+..++-++ +.| +-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11111221211 2 24557888999887766666676665543 111 2244
Q ss_pred EEcCChhHHhhcCCCC--eEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 278 VTTRKETVAGMMESTD--VISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 278 vTtR~~~va~~~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
.|||...+...+..-. ..+++..+.+|-..+..+.+..-+. +--++.+.+|+++|.|-|--+.-+-+..
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 6888766555444322 4589999999999999887654332 2235678889999999997666554443
No 50
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.63 E-value=4.7e-09 Score=105.09 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=88.2
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.|+....+.+..|.+..+|+ .|..+++||.|+++.|. +..+-|+.|..++.|..|-++ ++|.|+.+|. .|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p~AF~GL~~l~~Lvly------g~NkI~~l~k~~F 136 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAPDAFKGLASLLSLVLY------GNNKITDLPKGAF 136 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcChHhhhhhHhhhHHHhh------cCCchhhhhhhHh
Confidence 57778889999999988874 67889999999999998 888889999999988777661 5578888884 56
Q ss_pred cCCCCCcceeecCCCCccccc-cccCCCcccEEEecccccccccccc-ccccCccCCeeee
Q 039885 548 EKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l 606 (674)
++|..|+-|.+.-|++..++. .+..|++|..|.+.+| .+..++. .+..+.+++++.+
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn--~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN--KIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch--hhhhhccccccchhccchHhh
Confidence 677777766666666554433 3455555555555555 3444444 2444444444443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=2.5e-08 Score=107.36 Aligned_cols=172 Identities=23% Similarity=0.252 Sum_probs=123.6
Q ss_pred CceeEEEEEcCCcCCccccccCCC-CceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAK-KLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
..+..+.+..+.+..+|.....+. +|+.|++..|. +.. +|..+..++.|+.|++ ++|.+..+|...+.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~--i~~-l~~~~~~l~~L~~L~l-------~~N~l~~l~~~~~~~ 185 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK--IES-LPSPLRNLPNLKNLDL-------SFNDLSDLPKLLSNL 185 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc--hhh-hhhhhhcccccccccc-------CCchhhhhhhhhhhh
Confidence 457788888888888887777774 88888888887 544 3445788888888888 888888888888788
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
..|+.|++++|.+..+|..+..+.+|++|.+++| ....+|..+.+++++..|.+..+.+ ...+..+..
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N--~~~~~~~~~~~~~~l~~l~l~~n~~----------~~~~~~~~~ 253 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNN--SIIELLSSLSNLKNLSGLELSNNKL----------EDLPESIGN 253 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCC--cceecchhhhhcccccccccCCcee----------eeccchhcc
Confidence 8888888888888888888877888888888887 4677777788888888887644441 111333444
Q ss_pred cccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 631 LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+..++ .|.+++..... . ..+....+|+.|+++.|.
T Consensus 254 l~~l~-~L~~s~n~i~~-i-----~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLE-TLDLSNNQISS-I-----SSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccc-eeccccccccc-c-----ccccccCccCEEeccCcc
Confidence 44444 55555433211 1 116677788888887654
No 52
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.60 E-value=6.3e-08 Score=92.27 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=33.1
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND 189 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 189 (674)
.||||+++++++...|. ... ....+++.|+|.+|+|||+|+++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ--SGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS--S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHH--cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 48999999999999995 222 34668999999999999999999988533
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.60 E-value=3.1e-07 Score=91.27 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=101.6
Q ss_pred CCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 161 QNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 161 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
++...-+.+||++|+||||||+.+.+...... ..+|..|....-..-.+.|.++... ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 34677889999999999999999988533222 5577777654444444555544321 1235
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE--EcCChh---HHhhcCCCCeEeCCCCChHhhHHHHHHHhh-
Q 039885 241 AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV--TTRKET---VAGMMESTDVISIKELSERECWSLFERIAF- 314 (674)
Q Consensus 241 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~---va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~- 314 (674)
.++|.+|++|.|...+..+.+ .+||.-.+|+-++| ||.+.. .+..+....++.|++|+.++...++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 678999999999776544444 34666677877776 666654 222334456999999999999998887432
Q ss_pred -cC-CC---CCChh---hHHHHHHHHHHHcCCChHH
Q 039885 315 -FN-RP---SLECE---QLEEFGRKIVSKCKGLPLA 342 (674)
Q Consensus 315 -~~-~~---~~~~~---~l~~~~~~I~~~c~GlPLa 342 (674)
+. .. ..+.+ --..+..-++..|.|-.-+
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 11 11 11111 1233555567778776543
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=5e-08 Score=110.26 Aligned_cols=103 Identities=18% Similarity=0.311 Sum_probs=75.5
Q ss_pred ceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccCCCCCcceeecCCCCc-cccccccCCC
Q 039885 497 LRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEKLIHLRFLQLRDLMID-ELPETCCELF 574 (674)
Q Consensus 497 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~L~~Lr~L~L~~~~i~-~lP~~i~~L~ 574 (674)
++.|.+.++. +.+.+|..+.++++|+.|+| ++|.+.+ +|..++.+.+|++|+|++|.+. .+|+++++|+
T Consensus 420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~L-------s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINL-------SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCC--ccccCCHHHhCCCCCCEEEC-------CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 6667777776 66667777788888888888 7777775 7777888888888888888765 6777788888
Q ss_pred cccEEEeccccccccccccccccC-ccCCeeeeeee
Q 039885 575 NLQTLEIRQRGYYLRRLPHGFGRL-VNLRHLSEFVV 609 (674)
Q Consensus 575 ~L~~L~l~~~~~~~~~lP~~i~~L-~~L~~L~l~~~ 609 (674)
+|++|+|++| ...+.+|..++.+ .++..+++..|
T Consensus 491 ~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 491 SLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence 8888888887 5666778777653 35555655433
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=5e-07 Score=82.16 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=73.5
Q ss_pred eechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 039885 140 CGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEAL 219 (674)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 219 (674)
+|++..++.+...+... ..+.+.|+|++|+|||++|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888643 345789999999999999999998532 112345566655433322211111100
Q ss_pred hCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC------CCCcEEEEEcCChh
Q 039885 220 EGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING------QRGSKILVTTRKET 284 (674)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~IivTtR~~~ 284 (674)
............+..++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864223333343333332 35778888887543
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=98.58 E-value=1.8e-06 Score=89.72 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=109.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGK-RIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++... ...|.. .+=++.++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 36899988888888777632 334577999999999999999887421 122221 1112222222221 22222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhh-cCCCC
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGM-MESTD 293 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~-~~~~~ 293 (674)
++.+...... .-.++.-++|||+++.........+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2222111000 002456699999998876666666766665545567777766432 22111 12235
Q ss_pred eEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 294 VISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 294 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
.++++++++++....+...+-..+.... .+....|++.++|-.-.+...
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7999999999999998887754443222 334567899999887555433
No 57
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.58 E-value=3e-06 Score=88.33 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=109.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe--CCCCCHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV--SDPFDEYRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~ 214 (674)
.+++|+++.++.+..++... ..+.+.|+|.+|+||||+|+.+.+... ...+.. .++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHH
Confidence 46899999999999998643 334579999999999999999987421 111211 12222 2221111 1111
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHh-hcCCC
Q 039885 215 IIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAG-MMEST 292 (674)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~-~~~~~ 292 (674)
.+..+....+ .....+-++++|++..........+...+......+++|+++... .+.. .....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111111000 011345689999997665556667777766555556777766432 1111 11223
Q ss_pred CeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 293 DVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 293 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
..+++.+++.++....+...+...+..-. .+....+++.++|.+--+...-
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999998888887754433222 3345668899999887654433
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.58 E-value=8.8e-08 Score=94.56 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=64.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC--CCHHHHHHHHHHHhhCCCCCcccH------HHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP--FDEYRIAKAIIEALEGSATNLVEL------NALLL 234 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~------~~~~~ 234 (674)
....++|+|++|+|||||++.+|++.... +|+.++|++++.. +++.++++.+...+-....+.... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44679999999999999999999975544 8999999998776 799999999943332222111111 12222
Q ss_pred HHHHH-cCCCeEEEEEeCCCC
Q 039885 235 RINES-IAREKFLLVLDDVWT 254 (674)
Q Consensus 235 ~l~~~-l~~kr~LlVlDdv~~ 254 (674)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 258999999999943
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.8e-06 Score=94.27 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=113.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc------------------------c
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI------------------------N 192 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------------~ 192 (674)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+.+...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 369999999999999997532 34567899999999999999886532100 0
Q ss_pred ccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC
Q 039885 193 HFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQ 271 (674)
Q Consensus 193 ~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 271 (674)
.|...++++.+.. ....++.++.+.+... ..++.-++|||+++..+...++.|...+-.-.
T Consensus 91 ~hpDviEIdAas~------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 91 RFVDYIEMDAASN------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred CCCcceEeccccc------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 0001111111111 1111222222222211 24566799999999888888888888776654
Q ss_pred CCcEEE-EEcCChhHHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 272 RGSKIL-VTTRKETVAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 272 ~gs~Ii-vTtR~~~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
...++| +||....+...+ +....+.++.++.++..+.+.+.+-..+.... .+....|++.++|.|.-+..+
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 555555 455444444222 23468999999999999988876643332211 234466899999999765544
No 60
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.7e-06 Score=92.99 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=113.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc----cc---------------cccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND----VI---------------NHFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~---------------~~F~~~ 197 (674)
.++||-+..++.+...+.... ....+.++|+.|+||||+|+.+++... .. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368999999999999886432 345678999999999999999876211 00 012222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+++........ .+..++.+.+... ..+++-++|+|++...+...++.+...+-.....+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 1222233333221 3456779999999887777888888888776556666
Q ss_pred EE-EcCChhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHH
Q 039885 277 LV-TTRKETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTI 346 (674)
Q Consensus 277 iv-TtR~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 346 (674)
|+ ||....+... ......+++.+++.++....+.+.+-..+.... .+....|++.++|.+- |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 5443333322 233568999999999988888775543332111 3344568999999775 44444
No 61
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.6e-06 Score=97.26 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=121.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeCC---CCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF---GKRIWVCVSD---PFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~ 210 (674)
++++|++..+..+...+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 36899999999988887532 34569999999999999999998754333332 1233554432 112222
Q ss_pred HHHHH---------------HHHhhCCC----------------CCccc-HHHHHHHHHHHcCCCeEEEEEeCCCCCChh
Q 039885 211 IAKAI---------------IEALEGSA----------------TNLVE-LNALLLRINESIAREKFLLVLDDVWTEDYN 258 (674)
Q Consensus 211 ~~~~i---------------l~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 258 (674)
+...+ +...+... .+... ....+..+.+.++.++++++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111100 00011 123577788888889999998888877767
Q ss_pred hHHHHHHhhcCCCCCcEEEE--EcCChh-HHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHH
Q 039885 259 KWESFRRCLINGQRGSKILV--TTRKET-VAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVS 334 (674)
Q Consensus 259 ~~~~l~~~l~~~~~gs~Iiv--TtR~~~-va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~ 334 (674)
.|+.+...+..+.+...|++ ||++.. +...+ .....+.+.+++.++.+.++.+.+-..+... . .++...|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-A---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHH
Confidence 78888777776666555555 566432 11111 1234678999999999999998764322111 1 233444555
Q ss_pred HcCCChHHHHHHHHH
Q 039885 335 KCKGLPLAVKTIGSL 349 (674)
Q Consensus 335 ~c~GlPLai~~~~~~ 349 (674)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 554445666655444
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=5.1e-08 Score=112.64 Aligned_cols=153 Identities=26% Similarity=0.305 Sum_probs=104.5
Q ss_pred cCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc--cccccc-cccCCCCCcceeecCCC-Ccccc
Q 039885 492 LNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM--IREIPK-EIEKLIHLRFLQLRDLM-IDELP 567 (674)
Q Consensus 492 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~--l~~lp~-~i~~L~~Lr~L~L~~~~-i~~lP 567 (674)
.+....|...+.++. +.. ++.. ...+.|++|-+ .+|. +..++. .|..+++||+|||++|. +.+||
T Consensus 520 ~~~~~~rr~s~~~~~--~~~-~~~~-~~~~~L~tLll-------~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK--IEH-IAGS-SENPKLRTLLL-------QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cchhheeEEEEeccc--hhh-ccCC-CCCCccceEEE-------eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 445677777777776 322 2221 23347899988 7775 555554 47789999999999887 89999
Q ss_pred ccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCC
Q 039885 568 ETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVK 647 (674)
Q Consensus 568 ~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~ 647 (674)
.+|++|-+|++|+++++ .+..+|.++++|++|.||++..++ . .....+-+..|.+|+ .|.+..-. .
T Consensus 589 ~~I~~Li~LryL~L~~t--~I~~LP~~l~~Lk~L~~Lnl~~~~--~-------l~~~~~i~~~L~~Lr-~L~l~~s~--~ 654 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDT--GISHLPSGLGNLKKLIYLNLEVTG--R-------LESIPGILLELQSLR-VLRLPRSA--L 654 (889)
T ss_pred hHHhhhhhhhcccccCC--CccccchHHHHHHhhheecccccc--c-------cccccchhhhccccc-EEEeeccc--c
Confidence 99999999999999999 799999999999999999997766 2 122222233345555 44443322 1
Q ss_pred ChhhhhhccCCccCCCCeEEEe
Q 039885 648 DVDEAKSAGLENKMNLLHLGLG 669 (674)
Q Consensus 648 ~~~~~~~~~L~~~~~L~~L~L~ 669 (674)
........++.++.+|+.|...
T Consensus 655 ~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 655 SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccchhhHHhhhcccchhhheee
Confidence 1223333445666777766654
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.8e-06 Score=86.51 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=129.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
..+.+|+++++++...|...-. +....-+.|+|.+|.|||+.++.|....+....=...++|++-...++..++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3499999999999998764332 22233489999999999999999998532221111168999999999999999999
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhhHHHHHHhhcCCCC-CcEEEE--EcCChhHHhh---
Q 039885 217 EALEGSATNLVELNALLLRINESIA--REKFLLVLDDVWTEDYNKWESFRRCLINGQR-GSKILV--TTRKETVAGM--- 288 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~Iiv--TtR~~~va~~--- 288 (674)
++++..........+....+.+.+. ++.+++|||+++.-....-+.+...+..... .++|++ .+-+......
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 9997555445566666777777664 6889999999965322211334444433322 344433 3333322222
Q ss_pred -----cCCCCeEeCCCCChHhhHHHHHHHhhcCC-CCCChhhHHHHHHHHHHHcCC-ChHHHHHH
Q 039885 289 -----MESTDVISIKELSERECWSLFERIAFFNR-PSLECEQLEEFGRKIVSKCKG-LPLAVKTI 346 (674)
Q Consensus 289 -----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~c~G-lPLai~~~ 346 (674)
++.. .+...|-+.+|-..++..++-..- .....+..-+++..++..-+| -=.||..+
T Consensus 175 rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 377889999999999988764321 112223344444445544444 33444443
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=6.9e-06 Score=89.35 Aligned_cols=196 Identities=15% Similarity=0.191 Sum_probs=115.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGK-RIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 215 (674)
.++||-+.-+..+...+.... -...+.++|+.|+||||+|+.+++...-...... -.+..+....+ ...+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHH
Confidence 368999999998888776432 3457889999999999999999764211100000 00000000000 0001
Q ss_pred HHH-------hhC-CCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChhH
Q 039885 216 IEA-------LEG-SATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL-VTTRKETV 285 (674)
Q Consensus 216 l~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v 285 (674)
... +.. ......++.++.+.... -+.+++-++|+|+++......|+.+...+......+.+| +||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 000 000 00111222222222221 134677799999999877778999888887655566655 45555555
Q ss_pred Hhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHH
Q 039885 286 AGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKT 345 (674)
Q Consensus 286 a~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 345 (674)
...+ .....+++.+++.++....+.+.+-..+...+ .+....|++.++|.+--+..
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 4433 23457999999999999999888754443222 23445589999998855543
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=3.3e-06 Score=93.77 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=115.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||-+..++.|...+.... -...+.++|..|+||||+|+.+.+...-...+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 469999999999998887432 335578999999999999998876321100000 00000001111111
Q ss_pred HH-------hhCC-CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHH
Q 039885 217 EA-------LEGS-ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVA 286 (674)
Q Consensus 217 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 286 (674)
.. +... .....+..++.+.+... ..+++-++|||+++..+...++.+...+-......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000 01112233333333221 3467779999999988888888888888765556666555544 4443
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
.. .+....+.+.+++.++....+.+.+-..+.... .+....|++.++|.+--+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 233468999999999999988876533322122 2344568999999887555443
No 66
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.50 E-value=8e-06 Score=86.58 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=112.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc--c------------------cccce
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV--I------------------NHFGK 196 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~------------------~~F~~ 196 (674)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+.....- . .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999999886432 3457889999999999999888653110 0 12222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcE
Q 039885 197 RIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSK 275 (674)
Q Consensus 197 ~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 275 (674)
+++..+..... .+..++.+.+... ..+++-++|+|++........+.+...+......+.
T Consensus 89 -~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22221111111 1122222222211 234556899999976655667778777765555666
Q ss_pred EEEEcCChh-HHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 276 ILVTTRKET-VAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 276 IivTtR~~~-va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+|++|.+.. +... ......+++.++++++....+...+-..+...+ .+....+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 666665443 2222 223457889999999998888876644332111 3556778999999997665544
No 67
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.6e-07 Score=106.13 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=96.6
Q ss_pred ceeEEEEEcCCcC-CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccCC
Q 039885 473 KLRHSMLMLGFEA-SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEKL 550 (674)
Q Consensus 473 ~~r~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~L 550 (674)
.++.|.+.++.+. .+|..+.++++|+.|++++|. +.+.+|..+..+++|+.|+| ++|.+.+ +|+.+++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--l~g~iP~~~~~l~~L~~LdL-------s~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS--IRGNIPPSLGSITSLEVLDL-------SYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEEEC-------CCCCCCCCCchHHhcC
Confidence 4778888888874 688899999999999999998 88888988999999999999 9999986 99999999
Q ss_pred CCCcceeecCCCCc-cccccccCC-CcccEEEeccccccccccc
Q 039885 551 IHLRFLQLRDLMID-ELPETCCEL-FNLQTLEIRQRGYYLRRLP 592 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~-~lP~~i~~L-~~L~~L~l~~~~~~~~~lP 592 (674)
.+|++|+|++|.++ .+|..++.+ .++..+++.+| ..+...|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N-~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN-AGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCC-ccccCCC
Confidence 99999999999976 999998764 57889999998 5555554
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.2e-06 Score=91.27 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=115.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||-+..+..|..++.... -...+.++|+.|+||||+|+.+++...- .+... ...+....+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcHHHHHHccCC
Confidence 468999999999998887432 2346899999999999999999774211 11000 000111111111111110
Q ss_pred HHh---hC-CCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChhHHhh-c
Q 039885 217 EAL---EG-SATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL-VTTRKETVAGM-M 289 (674)
Q Consensus 217 ~~l---~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~va~~-~ 289 (674)
..+ .. ......++.++.+.+... ..++.-++|+|+++......++.+...+-.......+| .||....+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 00 001122233333333322 24566799999999888888888887775544445544 44544444322 2
Q ss_pred CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 290 ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 290 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
.....|.+.+++.++..+.+.+.+-..+.... .+....|++.++|.+--+..+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHHHHH
Confidence 33457999999999998888877654332222 344567999999999554443
No 69
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=6.4e-07 Score=79.65 Aligned_cols=119 Identities=25% Similarity=0.288 Sum_probs=77.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
+++.|.|+.|+|||||++.++.+.. ....+++++..+....... ..+ ..+.+.+....+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 6899999999999999999987532 2345666665542221100 000 2233333344477
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhc------CCCCeEeCCCCChHhh
Q 039885 245 FLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGMM------ESTDVISIKELSEREC 305 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~------~~~~~~~l~~L~~~~~ 305 (674)
.+|+||++... ..|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999765 46777666666655667999999877655321 2234788999987763
No 70
>PRK08727 hypothetical protein; Validated
Probab=98.49 E-value=5.1e-06 Score=82.02 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=89.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.|+|..|+|||+|++.+++.. .+......++.+.+ ....+. ..+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 459999999999999999998752 22333445665322 111111 1111 11 123
Q ss_pred EEEEEeCCCCCC-hhhHHH-HHHhhcC-CCCCcEEEEEcCChh---------HHhhcCCCCeEeCCCCChHhhHHHHHHH
Q 039885 245 FLLVLDDVWTED-YNKWES-FRRCLIN-GQRGSKILVTTRKET---------VAGMMESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 245 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
-+||+||+.... ...|.. +...+.. ..+|..||+|++... +...+.....+++++++.++-..++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 123433 3322222 134667999998532 2222233558999999999999999987
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 313 AFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 313 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+...+-..+ ++...-|++.++|-.-.+..+
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHHHHH
Confidence 754332222 345566888888777665433
No 71
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=2.7e-06 Score=96.46 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=100.7
Q ss_pred CceeechhhHH---HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKS---TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
.+|+|.+..+. .+..++.. .....+.++|++|+||||||+.+++. ...+|.. ++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhhH----
Confidence 36889887764 45555543 24556789999999999999999974 3333311 11110 0000
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHc--CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEE--cCChh--HHh
Q 039885 214 AIIEALEGSATNLVELNALLLRINESI--AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVT--TRKET--VAG 287 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivT--tR~~~--va~ 287 (674)
+..+........+ .+++.+|||||++..+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111122222222 2467799999998776666666665443 35555553 44431 111
Q ss_pred -hcCCCCeEeCCCCChHhhHHHHHHHhhc------CCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 288 -MMESTDVISIKELSERECWSLFERIAFF------NRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 288 -~~~~~~~~~l~~L~~~~~~~Lf~~~a~~------~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
..+....+.+++|+.++...++.+.+-. ..... --++....|++.+.|..-.+..+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCHHHHHHH
Confidence 1122457999999999999999876531 11111 11344566888888876544433
No 72
>PRK04195 replication factor C large subunit; Provisional
Probab=98.48 E-value=4.4e-06 Score=91.80 Aligned_cols=186 Identities=19% Similarity=0.180 Sum_probs=112.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..++++.+|+..-.. ....+.+.|+|++|+||||+|+.++++. .|+. +-++.++..+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~~-ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWEV-IELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCCE-EEEcccccccH-HHHHHHH
Confidence 4699999999999999864321 1236789999999999999999999853 1322 23344443222 2233333
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCCh----hhHHHHHHhhcCCCCCcEEEEEcCCh-hHHh-hc-
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDY----NKWESFRRCLINGQRGSKILVTTRKE-TVAG-MM- 289 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~IivTtR~~-~va~-~~- 289 (674)
....... .....++-+||||+++.... ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 01113677999999976432 345556655553 233456655432 1111 11
Q ss_pred CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 290 ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 290 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
.....+.+.+++.++....+.+.+...+.... .+....|++.++|-.-.+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23457899999999999888877654443222 3455668889988776665444333
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=4.2e-06 Score=92.65 Aligned_cols=184 Identities=13% Similarity=0.133 Sum_probs=112.3
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccc-------------------cceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINH-------------------FGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 197 (674)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-... |...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 369999999999999987532 3457899999999999999988663111000 1011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+.+..+....+ .++.++...... -..+++-++|||++...+....+.+...+......+++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 11211111111 112222222111 12356678999999877766777787777655455666
Q ss_pred EEEcCCh-hHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 277 LVTTRKE-TVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 277 ivTtR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
|++|.+. .+... .+....+.+.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..+-
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 6666533 22211 122347888999999999998877654433222 3345669999999996555443
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=6.1e-06 Score=91.54 Aligned_cols=197 Identities=13% Similarity=0.174 Sum_probs=111.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCCCCHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINH--FGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 214 (674)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-... ....-. ..+..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468998888888988887532 3456789999999999999988542110000 000000 00000011111
Q ss_pred HHH-------HhhCC-CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChh
Q 039885 215 IIE-------ALEGS-ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKET 284 (674)
Q Consensus 215 il~-------~l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 284 (674)
|.. .+... .....+..++.+.+... ..++.-++|||+++..+...++.+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 100 00000 00111122222221111 13455589999999888888888888776655555666554 4333
Q ss_pred HHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 285 VAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 285 va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+... ......+++++++.++....+.+.+-..+.... .+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 233568999999999999888877644433222 234566889999988655544
No 75
>PTZ00202 tuzin; Provisional
Probab=98.47 E-value=9.1e-06 Score=84.19 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=105.1
Q ss_pred ccccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 039885 133 LIDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 133 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 212 (674)
+.+.+.|+||+.+..++...|...+. ...+++.|+|++|+|||||++.+..... + .+++.-.. +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHH
Confidence 34567899999999999999975442 2446999999999999999999886422 2 13222222 789999
Q ss_pred HHHHHHhhCCCCCc--ccHHHHHHHHHHHc-C-CCeEEEEEeCCCCCC-hhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 213 KAIIEALEGSATNL--VELNALLLRINESI-A-REKFLLVLDDVWTED-YNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 213 ~~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
+.|+.+++.+.... .-.+.+.+.+.+.- . +++.+||+-==...+ ...+.+. ..|.....-+.|++---.+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 99999999743222 12234444444322 3 677777774221111 1233333 23444445677777655444322
Q ss_pred hc---CCCCeEeCCCCChHhhHHHHHHH
Q 039885 288 MM---ESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 288 ~~---~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
.. ..-.-|-+.+++.++|..+-.+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 12347889999999998877654
No 76
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=6.4e-06 Score=90.24 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=111.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.+... |.-|.... .+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 468999999999999886432 346788999999999999998876311 10111100 001111111111
Q ss_pred HHhh-------CC-CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChhHH
Q 039885 217 EALE-------GS-ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKETVA 286 (674)
Q Consensus 217 ~~l~-------~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~va 286 (674)
.... .. .....+.+.+.+.+... ..+++-++|+|+++......+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 1100 00 00111122222222211 12344469999998777677888888877655556665554 433333
Q ss_pred h-hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHHH
Q 039885 287 G-MMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTIG 347 (674)
Q Consensus 287 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 347 (674)
. .......+++.+++.++....+...+-..+.... .+.+..+++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 2233568999999999999888876644332121 2345668999999775 444433
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=8.2e-06 Score=88.38 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=114.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc--cc-----------------ceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN--HF-----------------GKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F-----------------~~~ 197 (674)
.++||.+.....|...+.... -...+.++|++|+||||+|+.+++...-.. .+ ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 469999888888887776432 335688999999999999999976421100 00 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
..+..+...... +...+.+.+.. ...+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 122221111111 11222222211 12356679999999766555667777777654444444
Q ss_pred EEEcCC-hhHHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHHHHHHhcc-
Q 039885 277 LVTTRK-ETVAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKTIGSLLRF- 352 (674)
Q Consensus 277 ivTtR~-~~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~~L~~- 352 (674)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+..-. .+....|++.++| ++.|+..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 444433 3333322 23458999999999998888887654332222 3345568887765 46666666554321
Q ss_pred --CCChHHHHHHH
Q 039885 353 --KRSLRVWQSIL 363 (674)
Q Consensus 353 --~~~~~~w~~~l 363 (674)
+-+.+....++
T Consensus 227 ~~~It~e~V~~~l 239 (472)
T PRK14962 227 EGKITLETVHEAL 239 (472)
T ss_pred CCCCCHHHHHHHH
Confidence 23455555444
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7e-06 Score=88.54 Aligned_cols=184 Identities=16% Similarity=0.145 Sum_probs=115.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc------c------------cc-cccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN------D------------VI-NHFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------~------------~~-~~F~~~ 197 (674)
.++||-+..++.+...+.... -...+.++|+.|+||||+|+.+.... . +. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888888876432 34578999999999999998886521 0 00 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL 277 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 277 (674)
+.++.+......+ .++|++..... -+.++.-++|+|++.......++.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 11222221110 123566689999998777777888888887766667666
Q ss_pred EEcC-ChhHHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 278 VTTR-KETVAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 278 vTtR-~~~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
++|. ...+...+ .....+++.+++.++....+.+.+...+...+ .+....|++.++|.+-.+...
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6554 34443322 33568999999999999999887755443222 334556999999988654433
No 79
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=6.1e-06 Score=90.38 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=112.3
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc-------------------cccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI-------------------NHFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 197 (674)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 369999999999999997432 34467899999999999999886632110 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+.+..+....++ +..++.+.+.. ...++.-++|+|+++......++.+...+......+++
T Consensus 91 ~eidaas~~~v~------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVE------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHH------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222222111222 12222222211 12356668999999887777888888888766566766
Q ss_pred EEEcCC-hhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 277 LVTTRK-ETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 277 ivTtR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
|++|.+ ..+... ......+++++++.++....+.+.+-..+.... .+....|++.++|.+.-+..+
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 665543 333322 222457899999999887777666543332222 233456889999988655543
No 80
>PRK09087 hypothetical protein; Validated
Probab=98.45 E-value=8e-06 Score=79.97 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=94.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 35689999999999999998887421 1133221 1111111111 11
Q ss_pred eEEEEEeCCCCC--ChhhHHHHHHhhcCCCCCcEEEEEcCC---------hhHHhhcCCCCeEeCCCCChHhhHHHHHHH
Q 039885 244 KFLLVLDDVWTE--DYNKWESFRRCLINGQRGSKILVTTRK---------ETVAGMMESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 244 r~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~IivTtR~---------~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
-+|++||+... +.+.+-.+...+. ..|..||+|++. +.....+....++++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999543 2223333333333 246679998874 233344455679999999999999999988
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh-------ccCCChHHHHHHHh
Q 039885 313 AFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL-------RFKRSLRVWQSILD 364 (674)
Q Consensus 313 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L-------~~~~~~~~w~~~l~ 364 (674)
+-..+-.-+ +++..-|++.+.|..-++..+-..| ..+.+....+++++
T Consensus 166 ~~~~~~~l~----~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 166 FADRQLYVD----PHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHHcCCCCC----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 754332121 4556668888888887776543332 12244555555554
No 81
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=3e-08 Score=95.82 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=103.5
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
+..+..+++++|.+..+..++.-++++|.|+++.|. +.. +.. +..+++|..||| ++|.++.+--.-.+|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~~-v~n-La~L~~L~~LDL-------S~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IRT-VQN-LAELPQLQLLDL-------SGNLLAECVGWHLKL 351 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc--eee-ehh-hhhcccceEeec-------ccchhHhhhhhHhhh
Confidence 456778889999888887777788999999999988 544 233 788889999999 999887766555677
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccc--cccccCccCCeeeeeeeCccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLP--HGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP--~~i~~L~~L~~L~l~~~~~~~ 613 (674)
-+.+.|.|++|.|..| ..+++|++|..||+++| .+..+- .+||+|+-|++|.+.+|.++.
T Consensus 352 GNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhhhhHhhh-hhhHhhhhheecccccc--chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7888899999998888 46889999999999998 677774 469999999999886665444
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=9.4e-06 Score=85.81 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=110.6
Q ss_pred CceeechhhHHHHHHHhcCCCCC----CCCceEEEEEEecCCChHHHHHHHHhcCcccc-------------------cc
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSE----QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI-------------------NH 193 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~ 193 (674)
.+++|-+.-++.|..++...... ...-...+.++|+.|+|||++|+.+.....-. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 36899999999999999754310 00134668899999999999999886521000 01
Q ss_pred cceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCC
Q 039885 194 FGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQR 272 (674)
Q Consensus 194 F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 272 (674)
.| ..++.... ......++.++.+.+.. -..+++-++|+|++...+....+.+...+.....
T Consensus 85 pD-~~~i~~~~-----------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEG-----------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEecccc-----------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 11111100 00011112222222221 1234556888899988877777778887766566
Q ss_pred CcEEEEEcCCh-hHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 273 GSKILVTTRKE-TVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 273 gs~IivTtR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+..+|++|.+. .+... .+....+.+.+++.++..+.+.... +. . .+.+..++..++|.|.....+.
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~--~----~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV--D----PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC--C----HHHHHHHHHHcCCCHHHHHHHh
Confidence 66666666553 33322 2334689999999999988887432 11 1 2346678999999997665543
No 83
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=1.7e-05 Score=92.24 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=120.9
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeC---CC--C-CHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVS---DP--F-DEYRI 211 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs---~~--~-~~~~~ 211 (674)
.++||+.+++.|...+.... .....++.|.|..|||||+|+++|..- +.+.+...+--.+. .. + .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 37899999999999997655 335679999999999999999999773 32222111111111 11 1 11234
Q ss_pred HHHHHHHhhCCC-------------------C-----------------C-----cccHH-----HHHHHHHHHc-CCCe
Q 039885 212 AKAIIEALEGSA-------------------T-----------------N-----LVELN-----ALLLRINESI-AREK 244 (674)
Q Consensus 212 ~~~il~~l~~~~-------------------~-----------------~-----~~~~~-----~~~~~l~~~l-~~kr 244 (674)
+++++.++.... . . ....+ .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 444444441110 0 0 00001 1122233333 4569
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcCCC----CCcEEEE--EcCCh--hHHhhcCCCCeEeCCCCChHhhHHHHHHHhhcC
Q 039885 245 FLLVLDDVWTEDYNKWESFRRCLINGQ----RGSKILV--TTRKE--TVAGMMESTDVISIKELSERECWSLFERIAFFN 316 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~Iiv--TtR~~--~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 316 (674)
.++|+||+...|....+-+........ .-..|.. |.+.. .+.........+.|.||+..+.-.+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999997776655554443333221 1112333 33322 122222345689999999999999998765321
Q ss_pred CCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039885 317 RPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRF 352 (674)
Q Consensus 317 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 352 (674)
. ....+....|+++..|+|+.+..+-..+..
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 2 222445667999999999999999888765
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.39 E-value=1.6e-05 Score=75.95 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCC
Q 039885 241 AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGMM-ESTDVISIKELSERECWSLFERIAFFNRP 318 (674)
Q Consensus 241 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 318 (674)
.+.+-++|+||+.......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + -
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i 169 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I 169 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C
Confidence 3566789999998777677888888887766667777776643 222211 22458999999999998888776 1 1
Q ss_pred CCChhhHHHHHHHHHHHcCCChHH
Q 039885 319 SLECEQLEEFGRKIVSKCKGLPLA 342 (674)
Q Consensus 319 ~~~~~~l~~~~~~I~~~c~GlPLa 342 (674)
. .+.+..|++.++|.|..
T Consensus 170 --~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 --S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred --C----HHHHHHHHHHcCCCccc
Confidence 1 34577799999999853
No 85
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=6.1e-08 Score=93.74 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=44.8
Q ss_pred CceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccccccCCCc
Q 039885 496 KLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFN 575 (674)
Q Consensus 496 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~ 575 (674)
.|+++++++|. +.. +.++..-++.+|+|++ +.|.+..+-. +..|.+|..||||+|.++++-.+-.+|.|
T Consensus 285 ~LtelDLS~N~--I~~-iDESvKL~Pkir~L~l-------S~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 285 ELTELDLSGNL--ITQ-IDESVKLAPKLRRLIL-------SQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred hhhhccccccc--hhh-hhhhhhhccceeEEec-------cccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcC
Confidence 34444444443 322 2333444444455555 4444443322 44444444455555444444444444444
Q ss_pred ccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 576 LQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 576 L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
..+|.|++| .+..+ .++++|-+|..|++..|+
T Consensus 354 IKtL~La~N--~iE~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 354 IKTLKLAQN--KIETL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred Eeeeehhhh--hHhhh-hhhHhhhhheeccccccc
Confidence 445555444 33333 234444455555554333
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.38 E-value=8.2e-06 Score=80.49 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=89.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
..+.+.|+|..|+|||+||+.+++... .... ...+++..... .. + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhc-c
Confidence 345688999999999999999988421 1122 23344433210 00 0 011 2
Q ss_pred CeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCc-EEEEEcCChhHHh--------hcCCCCeEeCCCCChHhhHHHHHHH
Q 039885 243 EKFLLVLDDVWTEDYNKWESFRRCLING-QRGS-KILVTTRKETVAG--------MMESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 243 kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~IivTtR~~~va~--------~~~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
..-+||+||+...+...-..+...+... ..|. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347899999654433334454444321 2344 4666766433222 2222468899999998877777665
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 313 AFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 313 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
+-..+... -++....+++.+.|.+..+..+...|
T Consensus 170 ~~~~~v~l----~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQL----ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43222211 13456668889999999988776655
No 87
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=1.7e-07 Score=100.93 Aligned_cols=168 Identities=24% Similarity=0.261 Sum_probs=120.8
Q ss_pred EEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCC-ceeEEEeccccccccccccccccccccCCCCCcc
Q 039885 477 SMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLT-CLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRF 555 (674)
Q Consensus 477 l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~ 555 (674)
+....+.....+..+..++.+..|.+.++. +.. ++.....+. +|+.|++ ++|.+..+|..++.+++|+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~--i~~-i~~~~~~~~~nL~~L~l-------~~N~i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN--ITD-IPPLIGLLKSNLKELDL-------SDNKIESLPSPLRNLPNLKN 167 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc--ccc-Cccccccchhhcccccc-------cccchhhhhhhhhccccccc
Confidence 444444442333455666889999998887 555 455466664 8999999 99999999888999999999
Q ss_pred eeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCC
Q 039885 556 LQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLR 635 (674)
Q Consensus 556 L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 635 (674)
|++++|.+..+|...+.+.+|+.|++++| .+..+|..+..+..|..|.+..|. ....+..+.++..+.
T Consensus 168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N--~i~~l~~~~~~~~~L~~l~~~~N~----------~~~~~~~~~~~~~l~ 235 (394)
T COG4886 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGN--KISDLPPEIELLSALEELDLSNNS----------IIELLSSLSNLKNLS 235 (394)
T ss_pred cccCCchhhhhhhhhhhhhhhhheeccCC--ccccCchhhhhhhhhhhhhhcCCc----------ceecchhhhhccccc
Confidence 99999999999998889999999999999 799999988888889999986553 112333344444444
Q ss_pred CeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 636 GSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 636 g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.|.+.++.... ....+.++.+|+.|+++.|.
T Consensus 236 -~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 236 -GLELSNNKLED-----LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred -ccccCCceeee-----ccchhccccccceecccccc
Confidence 33332222111 13456777889999988774
No 88
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3.9e-07 Score=69.25 Aligned_cols=57 Identities=26% Similarity=0.443 Sum_probs=40.7
Q ss_pred CceeEEEecccccccccccccccc-ccccCCCCCcceeecCCCCccccc-cccCCCcccEEEeccc
Q 039885 521 TCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQR 584 (674)
Q Consensus 521 ~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~ 584 (674)
++|++|++ ++|.++.+| ..+.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l-------~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDL-------SNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEE-------TSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEEC-------CCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777 777777766 456677777777777777777765 4577777777777776
No 89
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.2e-05 Score=88.76 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=110.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc-------------------cccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI-------------------NHFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 197 (674)
.++||-+..++.+..++.... -...+.++|+.|+||||+|+.+.....-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999887532 33567899999999999999886532100 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+++..+..... .+..++.+.+.. -..+++-++|+|+++.......+.+...+......+.+
T Consensus 91 ~ei~~~~~~~v------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQV------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCH------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22221111111 111222222111 12456779999999887777788888888765556666
Q ss_pred EEEcCC-hhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 277 LVTTRK-ETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 277 ivTtR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
|++|.+ ..+... ......+++++++.++....+.+.+-..+.... .+....|++.++|.+--+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~l 220 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSL 220 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 655543 332211 122358899999999998888776543332111 234466889999988644333
No 90
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.36 E-value=7.5e-07 Score=91.65 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHhhCCCC
Q 039885 147 STLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF--DEYRIAKAIIEALEGSAT 224 (674)
Q Consensus 147 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~ 224 (674)
-++++.+..-. .-...+|+|++|+||||||+.||++.... +|+.++||.+++.. .+.++++.|...+-..+.
T Consensus 157 ~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 45666665433 44568899999999999999999975544 89999999999987 777888887633222222
Q ss_pred CcccHH------HHHHHHHHH-cCCCeEEEEEeCCCC
Q 039885 225 NLVELN------ALLLRINES-IAREKFLLVLDDVWT 254 (674)
Q Consensus 225 ~~~~~~------~~~~~l~~~-l~~kr~LlVlDdv~~ 254 (674)
+..... ...+.-+.. -.++..+|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 211111 111111222 368999999999943
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2.5e-05 Score=81.87 Aligned_cols=194 Identities=11% Similarity=0.085 Sum_probs=114.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc--ccc-eEE---EEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN--HFG-KRI---WVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~-~~~---wv~vs~~~~~~~ 210 (674)
.+++|-+..++.+.+.+.... -...+.++|+.|+||+|+|..+....--.. ... +.. -..+.... .
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---P 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---h
Confidence 469999999999999887532 345688999999999999977754210000 000 000 00000000 0
Q ss_pred HHHHHHHHhhCC---------C-----CCcccHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCC
Q 039885 211 IAKAIIEALEGS---------A-----TNLVELNALLLRINESI-----AREKFLLVLDDVWTEDYNKWESFRRCLINGQ 271 (674)
Q Consensus 211 ~~~~il~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 271 (674)
..+.|...-..+ . .....++++. .+.+.+ .+++-++|+||+...+....+.+...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111110000 0 0111233322 222332 2566799999999888888888888887665
Q ss_pred CCcEEEEEcCChh-HHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 272 RGSKILVTTRKET-VAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 272 ~gs~IivTtR~~~-va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
.++.+|++|.+.. +... ......+.+.+++.++..+++...... .. .+....++..++|.|+.+..+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LP----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666777666543 3222 233568999999999999999875311 11 1112568999999998776654
No 92
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.3e-07 Score=96.32 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCceeEEEEEcCCcCC---ccccccCCCCceEEEecCCCcccccchhH-hhccCCceeEEEecccccccccccccc--cc
Q 039885 471 KEKLRHSMLMLGFEAS---FPDSLLNAKKLRSFLISSPYDVFSSVLPR-LFDQLTCLRTLKIVAHDRRWSRGMIRE--IP 544 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~~l~~--lp 544 (674)
...+|.|+++.|-+.. +-.....+++|+.|+++.|. +.....+ .-..+++|+.|.| ++|.++. +-
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr--l~~~~~s~~~~~l~~lK~L~l-------~~CGls~k~V~ 215 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR--LSNFISSNTTLLLSHLKQLVL-------NSCGLSWKDVQ 215 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc--ccCCccccchhhhhhhheEEe-------ccCCCCHHHHH
Confidence 4556666666664422 22233456666666666665 2211111 0124455666666 5555543 22
Q ss_pred ccccCCCCCcceeecCCC-CccccccccCCCcccEEEecccccccccccc--ccccCccCCeeeeeeeCccC
Q 039885 545 KEIEKLIHLRFLQLRDLM-IDELPETCCELFNLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 545 ~~i~~L~~Lr~L~L~~~~-i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~ 613 (674)
...-..+.|..|.|..|. +..--.+...++.|+.|||++| .+..+|. -++.++.|+.|++..++++.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N--~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN--NLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC--cccccccccccccccchhhhhccccCcch
Confidence 233345566666776663 2222223344566777777777 4555663 36777777777776666544
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=1.1e-05 Score=79.86 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=93.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
.+.+.|+|+.|+|||+|++.+++... ..-..+.++.+..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 35789999999999999999987422 2222345555532100 00111111211
Q ss_pred eEEEEEeCCCCCC-hhhHHH-HHHhhcC-CCCC-cEEEEEcCChh---------HHhhcCCCCeEeCCCCChHhhHHHHH
Q 039885 244 KFLLVLDDVWTED-YNKWES-FRRCLIN-GQRG-SKILVTTRKET---------VAGMMESTDVISIKELSERECWSLFE 310 (674)
Q Consensus 244 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~g-s~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~ 310 (674)
--+|++||+.... ...|+. +...+.. -..| .++|+||+... +...+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2389999996532 134543 3233322 1233 37999988542 33334556799999999999999998
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 311 RIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 311 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
+.+...+-. --+++..-|++.+.|..-++..+-..|
T Consensus 178 ~~a~~~~~~----l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGFE----LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 866543221 124566678899988877666554443
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.5e-05 Score=85.28 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=111.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE-eCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC-VSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 215 (674)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+...-...++...|.. +..+...-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999988888888887432 234588999999999999998876321111010000000 00000000001111
Q ss_pred HHHh-------hC-CCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChhH
Q 039885 216 IEAL-------EG-SATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKETV 285 (674)
Q Consensus 216 l~~l-------~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v 285 (674)
.... .+ ......++.++.+.+.. -..+++-++|+|++.......++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1000 00 00011122222222211 123566688999998777678888888887666666666555 43333
Q ss_pred Hhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHH
Q 039885 286 AGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKT 345 (674)
Q Consensus 286 a~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 345 (674)
...+ .....+++.++++++....+...+-..+.... .+.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 3222 12347899999999998888776543322111 34566799999998864444
No 95
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.2e-05 Score=87.35 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=116.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc--eEEEEEeCCCCCHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG--KRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~ 214 (674)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-..... ...+-.+... .-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 469999999999999987432 345688999999999999999876321110000 0000000000 00111
Q ss_pred HHHHhhC--------CCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChh
Q 039885 215 IIEALEG--------SATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKET 284 (674)
Q Consensus 215 il~~l~~--------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 284 (674)
|...... ......++.++.+.++.. ..+++-++|+|++........+.|...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111100 001112233333332211 23455689999998877777888888887665666665544 4444
Q ss_pred HHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 285 VAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 285 va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+...+ .....+++..++.++....+.+.+-..+.... .+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 23458999999999999998887644332222 2445668999999987665443
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=9.5e-06 Score=85.98 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=100.5
Q ss_pred cccCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF 206 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 206 (674)
+...++.|+++.+++|.+.+...-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc---
Confidence 34457999999999999877422110 0123456899999999999999999984 22333 2221
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------Chhh---HHHHHHhhcC--C
Q 039885 207 DEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYNK---WESFRRCLIN--G 270 (674)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~---~~~l~~~l~~--~ 270 (674)
...+.. ...+. ....+...+...-.....+|+|||++.. +... +..+...+.. .
T Consensus 189 -~~~l~~----~~~g~-----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 -GSELVR----KYIGE-----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -hHHHHH----HhhhH-----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111111 11000 0111111222222346689999998642 1112 2223222221 1
Q ss_pred CCCcEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 271 QRGSKILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 271 ~~gs~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..+.+||.||.... +.....-...+++...+.++..++|..++...... ..-.+ ..+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 24667888887543 21111124578999999999999998877543321 11233 34777777664
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.3e-05 Score=83.53 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=115.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc--cccceEEEEEeCCCCCHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI--NHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
..++|-+...+.+...+.... -...+.|+|+.|+||||+|+.+....--. ..+... ............+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 469999999999999987532 34578999999999999999886631110 001110 00001111112222
Q ss_pred HHHHhhC-------C--C-----CCcccHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcE
Q 039885 215 IIEALEG-------S--A-----TNLVELNALLLRINESI-----AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSK 275 (674)
Q Consensus 215 il~~l~~-------~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 275 (674)
|...-.. . . ......+++. .+.+.+ .+++-++|+|+++..+....+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 2221100 0 0 0111233322 233332 35677999999998888888888888866444455
Q ss_pred E-EEEcCChhHHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 276 I-LVTTRKETVAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 276 I-ivTtR~~~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+ ++|++...+.... +....+.+.+++.++...++........ .. .+....|++.++|.|..+..+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~----~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD----GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4454443332222 2245899999999999999987432111 11 2345678999999998776554
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=98.31 E-value=2e-05 Score=77.82 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=93.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 35689999999999999999987422 2223455665432 2211 011 22222222
Q ss_pred eEEEEEeCCCCCC-hhhHHH-HHHhhcC-CCCCcEEEEEcCChhH---------HhhcCCCCeEeCCCCChHhhHHHHHH
Q 039885 244 KFLLVLDDVWTED-YNKWES-FRRCLIN-GQRGSKILVTTRKETV---------AGMMESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 244 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IivTtR~~~v---------a~~~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
-++|+||+.... ...|.. +...+.. ...|..||+|++.... ...+....++++++++.++-..++.+
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 278899996431 234544 4444432 2346689998875431 11123346899999999999999997
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 312 IAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 312 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
++...+-.-+ +++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~~l~----~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHLT----DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6654332111 4667778899988877666554444
No 99
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=3.9e-05 Score=81.56 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=107.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc------ccccceEE-EEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV------INHFGKRI-WVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~ 209 (674)
.+++|.+..++.+...+.... -.+.+.++|++|+||||+|+.+.+...- ...|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 468999999999999987432 3468889999999999999988763211 01121111 1111110111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChhHHh
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKETVAG 287 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~va~ 287 (674)
.+..++.+.+.. -..+++-++|+|++.......++.+...+......+.+|++| ....+..
T Consensus 91 -----------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 -----------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -----------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111112221111 123455689999997665566777777665544445555554 3322221
Q ss_pred h-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHH
Q 039885 288 M-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKT 345 (674)
Q Consensus 288 ~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 345 (674)
. ......+++.++++++....+...+...+..-+ .+....|++.++|.+-.+..
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHH
Confidence 1 223457899999999999888887754433222 34566688899997764443
No 100
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.30 E-value=1e-07 Score=95.69 Aligned_cols=117 Identities=25% Similarity=0.262 Sum_probs=96.7
Q ss_pred CcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccCCCCCcceeecC-
Q 039885 483 FEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEKLIHLRFLQLRD- 560 (674)
Q Consensus 483 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~L~~Lr~L~L~~- 560 (674)
.+.++|..+. +....+.+..|. +..++|..|+.+++||.||| ++|.|+. -|..|.+|..|-.|-+-+
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~--I~~iP~~aF~~l~~LRrLdL-------S~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDL-------SKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred CcccCcccCC--CcceEEEeccCC--cccCChhhccchhhhceecc-------cccchhhcChHhhhhhHhhhHHHhhcC
Confidence 4456665443 456678888888 88889999999999999999 9999999 589999999888777666
Q ss_pred CCCcccccc-ccCCCcccEEEeccccccccccc-cccccCccCCeeeeeeeCcc
Q 039885 561 LMIDELPET-CCELFNLQTLEIRQRGYYLRRLP-HGFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 561 ~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~ 612 (674)
|+|+.||.. +++|..||.|.+.-| .+.-++ ..++.|++|..|.++.|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan--~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNAN--HINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChh--hhcchhHHHHHHhhhcchhcccchhhh
Confidence 889999985 799999999999988 555555 45999999999999777643
No 101
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.8e-05 Score=88.85 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=114.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...+. ....+..-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 379999999999988887432 345678999999999999998876321000000 000111112222222
Q ss_pred HHhhCC--------CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHH
Q 039885 217 EALEGS--------ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVA 286 (674)
Q Consensus 217 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 286 (674)
...... .....++.++.+.+... ..+++-++|+|++........+.|...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 00111222222222211 2356679999999877666778887777665556666665543 3333
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
.. ......+.+..++.++....+...+...+.... .+....|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 123457889999999998888877654332221 3456679999999997655443
No 102
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=3.5e-05 Score=88.70 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=112.3
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....... .+..+.+ .+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~s----C~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDS----CVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHH----HHHHH
Confidence 369999999999999987532 33567899999999999999886642110100000 0000000 00000
Q ss_pred HH---------hhC-CCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChh
Q 039885 217 EA---------LEG-SATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKET 284 (674)
Q Consensus 217 ~~---------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 284 (674)
.. +.. ......++.++.+.+.. -..++.-++|||+++......++.|...+..-...+.+|++| ....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 000 00011222222222211 123556688999999888888899998888766666666555 4444
Q ss_pred HHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHH
Q 039885 285 VAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKT 345 (674)
Q Consensus 285 va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 345 (674)
+...+ .....|++..++.++....+.+.+-..+.... .+....|++.++|.+..+..
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~Al~ 220 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDSLS 220 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 44322 33568999999999988888775533332111 23445689999998854443
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.27 E-value=2.3e-05 Score=76.47 Aligned_cols=185 Identities=14% Similarity=0.193 Sum_probs=104.5
Q ss_pred ceeech-hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc-c-eEEEEEeCCCCCHHHHHHH
Q 039885 138 DVCGRV-EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF-G-KRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 138 ~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~ 214 (674)
-++|-. +..-.....+.... ......+.|+|..|+|||.|.+++++.. .+.. . .++++ +..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~--~~~~~~~~v~y~------~~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEA--QKQHPGKRVVYL------SAEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHH--HHHCTTS-EEEE------EHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHH--Hhccccccceee------cHHHHHHH
Confidence 345653 33334444444332 2234457899999999999999999852 2222 2 34455 45567777
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCCh-hhHHH-HHHhhcC-CCCCcEEEEEcCChh-------
Q 039885 215 IIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDY-NKWES-FRRCLIN-GQRGSKILVTTRKET------- 284 (674)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~IivTtR~~~------- 284 (674)
+...+... ... .+.+.++ .-=+|++||++.... ..|.+ +...+.. ...|.+||+|+....
T Consensus 79 ~~~~~~~~-----~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRDG-----EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHTT-----SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHcc-----cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 77766542 122 2333343 334889999976432 23433 3333322 135678999996432
Q ss_pred --HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 285 --VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 285 --va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
....+...-++++++++.++...++.+.+...+-. --+++..-|++.+.+..-.+..+-
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 22233445589999999999999999988654432 224566667888777666555443
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.7e-05 Score=84.87 Aligned_cols=198 Identities=13% Similarity=0.178 Sum_probs=114.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....+. ..+..-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 368998888888888886432 3467889999999999999988764211100000 0000001111111
Q ss_pred HHhhC--------CCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHH
Q 039885 217 EALEG--------SATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVA 286 (674)
Q Consensus 217 ~~l~~--------~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 286 (674)
..... ......+.+.+.+.+.. -..+++-+||+|++.......++.|...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 10000 00011112222222221 12456679999999887777788888887654445556555544 4433
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP-LAVKTIGSLL 350 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~L 350 (674)
.. ......+++.+++.++....+...+...+.... .+....|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 223457899999999999888876654432122 344566888999965 5666665544
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=5.2e-05 Score=83.94 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-....+. -.+... ...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---Cccccc----HHHHHhh
Confidence 369999999999999987432 3446789999999999999988763210000000 000000 0001110
Q ss_pred HH---------hhC-CCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc-CChh
Q 039885 217 EA---------LEG-SATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT-RKET 284 (674)
Q Consensus 217 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 284 (674)
.. +.. ......+..++.+.+... ..+++-++|+|++........+.|...+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 001112223333333221 23556689999998888788888888887765566655544 4444
Q ss_pred HHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHH
Q 039885 285 VAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTI 346 (674)
Q Consensus 285 va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 346 (674)
+... .+....+++.+++.++..+.+.+.+-..+.... .+....|++.++|.+- |+..+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 4332 233568999999999998888776644332222 2345568889999875 44443
No 106
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.2e-06 Score=66.51 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=53.2
Q ss_pred CCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCCcceeecCCCC
Q 039885 495 KKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRFLQLRDLMI 563 (674)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i 563 (674)
++|++|.+.+|. +..+.+..|..+++|++|++ ++|.+..+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l-------~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK--LTEIPPDSFSNLPNLETLDL-------SNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST--ESEECTTTTTTGTTESEEEE-------TSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC--CCccCHHHHcCCCCCCEeEc-------cCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999998 87777788999999999999 999999966 5789999999999999975
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=4e-05 Score=82.97 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=102.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
..-+.|+|..|+|||+|++++.+.......-..++++ +..++...+...+.... ...+.+.+.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 3458899999999999999998842111111123333 34567777777664311 11223333333 3
Q ss_pred eEEEEEeCCCCCCh-hhH-HHHHHhhcC-CCCCcEEEEEcCChh---------HHhhcCCCCeEeCCCCChHhhHHHHHH
Q 039885 244 KFLLVLDDVWTEDY-NKW-ESFRRCLIN-GQRGSKILVTTRKET---------VAGMMESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 244 r~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+.... +...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 44889999965421 222 334433332 234557888876432 222334455889999999999999998
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 312 IAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 312 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
.+-..+.. ..--+++..-|++.+.|.|-.+..+..
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 87543210 011245677799999999988776653
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=0.00011 Score=79.99 Aligned_cols=184 Identities=13% Similarity=0.145 Sum_probs=110.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc---cc----------------ccceE
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV---IN----------------HFGKR 197 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~----------------~F~~~ 197 (674)
.+++|-+.-+..+..++.... -.....++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368999999999999997532 3456778999999999999988653110 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEE
Q 039885 198 IWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKI 276 (674)
Q Consensus 198 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 276 (674)
+++..+.. ....+.+.+.+.+... ..+++-++|+|+++.......+.+...+........+
T Consensus 91 ~eidaas~------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASN------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccC------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11211111 1111122222222211 2456779999999877666777887777665545555
Q ss_pred EEEc-CChhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 277 LVTT-RKETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 277 ivTt-R~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
|++| +...+... ......+.+.+++.++....+...+-..+...+ .+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 43333322 223457899999999998888876644332222 2345568889999876555444
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=8.5e-05 Score=83.30 Aligned_cols=191 Identities=17% Similarity=0.201 Sum_probs=111.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc-----ceEEEE-EeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF-----GKRIWV-CVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~~~~wv-~vs~~~~~~~ 210 (674)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.++...- ..+. .|.... +....++..+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccCCCCCchhHHHHhhcCCCcEEE
Confidence 368999999999999987432 345678999999999999998865311 0000 000000 0000000000
Q ss_pred HHHHHHHHhhC-CCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChhHHh
Q 039885 211 IAKAIIEALEG-SATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL-VTTRKETVAG 287 (674)
Q Consensus 211 ~~~~il~~l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~va~ 287 (674)
+.. ......+++++.+.+... ..+++-++|+|++.......+..+...+-.....+.+| +|+....+..
T Consensus 92 --------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 92 --------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred --------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 000 000112233333333321 23566799999998877778888888776654455544 4554444432
Q ss_pred h-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHH
Q 039885 288 M-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKT 345 (674)
Q Consensus 288 ~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 345 (674)
. ......+++.+++.++....+...+-..+.... .+.+..|++.++|.+--+..
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 2 233468999999999998888776543332111 23456689999997754443
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.20 E-value=7.5e-05 Score=74.48 Aligned_cols=199 Identities=19% Similarity=0.143 Sum_probs=121.6
Q ss_pred hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHh
Q 039885 144 EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEAL 219 (674)
Q Consensus 144 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l 219 (674)
.-++++.++|..+. ....+-+.|||.+|.|||++++++....-... .--.++.|......+...++..|+.++
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 34566666666544 34667799999999999999999976422111 111466777888899999999999999
Q ss_pred hCCCCCcccHHHHHHHHHHHcCC-CeEEEEEeCCCCC---ChhhHHHHHH---hhcCCCCCcEEEEEcCChhHHhhc---
Q 039885 220 EGSATNLVELNALLLRINESIAR-EKFLLVLDDVWTE---DYNKWESFRR---CLINGQRGSKILVTTRKETVAGMM--- 289 (674)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~---~l~~~~~gs~IivTtR~~~va~~~--- 289 (674)
+...........+...+...++. +-=+||+|++.+. ...+-..+.. .+.+.-.-+-|.+-|+...-+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98876666666666555566543 4458999999652 1122333333 333333445566666644332211
Q ss_pred --CCCCeEeCCCCChH-hhHHHHHHHhh--cCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 290 --ESTDVISIKELSER-ECWSLFERIAF--FNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 290 --~~~~~~~l~~L~~~-~~~~Lf~~~a~--~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+-..++.+..-..+ +...|+..... .-..+. .-...+++..|...++|+.=-+..+
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHHHH
Confidence 11346677776554 44455433221 111111 1234678999999999998555433
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=3.6e-06 Score=87.18 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=64.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC--CCHHHHHHHHHHHhhCCCCCcccH------HHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP--FDEYRIAKAIIEALEGSATNLVEL------NALLL 234 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~------~~~~~ 234 (674)
.-..++|+|++|+|||||++.+++.... ++|+..+||.+.+. .++.++++.++..+-..+.+.... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4467999999999999999999996443 37999999999966 789999999865443332221111 12222
Q ss_pred HHHHH-cCCCeEEEEEeCCCC
Q 039885 235 RINES-IAREKFLLVLDDVWT 254 (674)
Q Consensus 235 ~l~~~-l~~kr~LlVlDdv~~ 254 (674)
..... -++++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 368999999999954
No 112
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=0.00012 Score=79.80 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=112.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc----cc----------------cccce
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND----VI----------------NHFGK 196 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~----------------~~F~~ 196 (674)
.++||-+..++.+...+.... -..+..++|+.|+||||+|+.+.+..- .. .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 369999988899998886432 345678999999999999997765310 00 0111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH----HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCC
Q 039885 197 RIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE----SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQR 272 (674)
Q Consensus 197 ~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 272 (674)
++.+..+.. ...+.+.+.+.. -..+++-++|+|++.....+..+.+...+-....
T Consensus 88 v~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 111111111 112222222211 1124566899999988887888888888876666
Q ss_pred CcEEEEEcCCh-hHHh-hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 273 GSKILVTTRKE-TVAG-MMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 273 gs~IivTtR~~-~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
.+++|++|.+. .+.. .......+++.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 67767666543 2221 1123468999999999998888776644333222 3455679999999996555543
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00011 Score=82.26 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=112.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---------------------cccccc
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---------------------VINHFG 195 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~ 195 (674)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 369999999999999987432 345688999999999999988765311 011232
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCc
Q 039885 196 KRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGS 274 (674)
Q Consensus 196 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 274 (674)
. ..+..+...... ++..+.+.+... ..+++=++|+|++.......++.|...+......+
T Consensus 92 ~-~~ld~~~~~~vd------------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSVD------------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCHH------------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 2 112221111111 122222221111 23455688999998877778888888887766666
Q ss_pred EEEEEc-CChhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHH
Q 039885 275 KILVTT-RKETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKT 345 (674)
Q Consensus 275 ~IivTt-R~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 345 (674)
.+|++| ....+... ......+++.+++.++....+...+-..+.... .+....|++.++|..--+..
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 665544 44444332 233568999999999999888876644332221 23456689999997754443
No 114
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=5.4e-05 Score=78.44 Aligned_cols=212 Identities=14% Similarity=0.097 Sum_probs=126.7
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
.+..++||+.|++.+.+++...-. ....+-+.|.|-+|.|||.+...|+.+..-...=.+++.+++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456799999999999999875433 345677999999999999999999986432222235567777666678888888
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHcCC-C-eEEEEEeCCCCCChhhHHHHHHhhcC-CCCCcEEEEEcCCh-------h
Q 039885 215 IIEALEGSATNLVELNALLLRINESIAR-E-KFLLVLDDVWTEDYNKWESFRRCLIN-GQRGSKILVTTRKE-------T 284 (674)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~-k-r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~-------~ 284 (674)
|...+...........+.+..+.....+ + -+|+|+|.++.-....-..+...|.+ .-+++|+|+.---. .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8888733222222224555566665543 3 58999999854322222223333332 23556655432111 0
Q ss_pred HHhh----cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 285 VAGM----MESTDVISIKELSERECWSLFERIAFFNRPSL-ECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 285 va~~----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
.... ......+..+|-+.++..++|..+.-...... ....++-.|++++.-.|-+--|+-++-+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 1111 12245788899999999999988864333221 1223444444444444444444444433
No 115
>CHL00181 cbbX CbbX; Provisional
Probab=98.14 E-value=0.00016 Score=73.55 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=75.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
...+.++|++|+||||+|+.++........-...-|+.++. .+ +.....+.. .......+.+. .+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a-~g- 123 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA-MG- 123 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc-cC-
Confidence 34588999999999999999976321111111112444441 12 222222211 11112223222 22
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhc--------CCCCeEeCCCCChHhhH
Q 039885 244 KFLLVLDDVWTE---------DYNKWESFRRCLINGQRGSKILVTTRKETVAGMM--------ESTDVISIKELSERECW 306 (674)
Q Consensus 244 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~--------~~~~~~~l~~L~~~~~~ 306 (674)
-+|+||++... ..+....+...+.....+.+||+++....+.... .....+.+++++.++..
T Consensus 124 -gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 124 -GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred -CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 48999999642 1233444555555544556777777644432211 12347899999999999
Q ss_pred HHHHHHhhcC
Q 039885 307 SLFERIAFFN 316 (674)
Q Consensus 307 ~Lf~~~a~~~ 316 (674)
+++.+.+-..
T Consensus 203 ~I~~~~l~~~ 212 (287)
T CHL00181 203 QIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHh
Confidence 9988876443
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.0001 Score=82.27 Aligned_cols=198 Identities=14% Similarity=0.197 Sum_probs=110.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE-eCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC-VSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 215 (674)
.++||-+..+..|..++.... -...+.++|+.|+||||+|+.+.+...-...++.-.|-. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999988886432 345588999999999999988865321111010000100 00000000011111
Q ss_pred HHH-------hhC-CCCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChhH
Q 039885 216 IEA-------LEG-SATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV-TTRKETV 285 (674)
Q Consensus 216 l~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v 285 (674)
... +.+ ......++.++.+.+.. -..+++-++|+|+++.......+.|...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 000 000 00111222233332221 1334556889999988776778888888877555566554 4444444
Q ss_pred Hhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHH
Q 039885 286 AGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAV 343 (674)
Q Consensus 286 a~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 343 (674)
... ......+++.+++.++....+.+.+-..+.... .+.+..|++.++|.+--+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDA 225 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHH
Confidence 322 234568999999999988888776543332111 345566999999966533
No 117
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.13 E-value=1.2e-05 Score=84.73 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=79.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 46888999999999999743 3588899999999999999988654455778888999999888777654221
Q ss_pred HHhhCCCCCc-ccHHHHHHHHHHHc--CCCeEEEEEeCCCCCChhh-HHHHHHhhc
Q 039885 217 EALEGSATNL-VELNALLLRINESI--AREKFLLVLDDVWTEDYNK-WESFRRCLI 268 (674)
Q Consensus 217 ~~l~~~~~~~-~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 268 (674)
.....- ....-..+.+.... .++++++|+|++...+... +.++...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 010000 00011122222222 2468999999997766544 555555444
No 118
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.00015 Score=81.28 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=112.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.++....- ...+... ......-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCCC----CCCCcccHHHHHHh
Confidence 368999999999999887532 2356889999999999999998764211 1110000 00111111222222
Q ss_pred HHhhCC-----CCCcccHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHH
Q 039885 217 EALEGS-----ATNLVELNALLLRINES----IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVA 286 (674)
Q Consensus 217 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 286 (674)
...... .......+.+.+.+... ..+++-++|+|++.......++.|...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111110 00111222222222111 1345668999999887777888888888765455555544443 3333
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
.. ......+++..++.++....+.+.+-..+.... .+....|++.++|.+..+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 223457888999999888877776543322111 23466799999998866554433
No 119
>PRK06620 hypothetical protein; Validated
Probab=98.11 E-value=0.00017 Score=69.99 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=81.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 6789999999999999998877532 1 1111 00000 0 0011 23
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-------HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCC
Q 039885 245 FLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-------VAGMMESTDVISIKELSERECWSLFERIAFFNR 317 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-------va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 317 (674)
-++++||+........-.+...+. ..|..||+|++... ....+...-++++++++.++...++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899996321111222222222 35668999988443 222234455899999999998888887764322
Q ss_pred CCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 318 PSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 318 ~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
-. --+++..-|++.+.|.--.+.-+-
T Consensus 165 l~----l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 165 VT----ISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred CC----CCHHHHHHHHHHccCCHHHHHHHH
Confidence 11 114566678888887766555443
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00015 Score=78.58 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=107.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc---------------------cccc
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI---------------------NHFG 195 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~ 195 (674)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 479999999999999887432 34668899999999999998886531100 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCc
Q 039885 196 KRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGS 274 (674)
Q Consensus 196 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 274 (674)
. +++....... ..+..++.+.+... ..+++-++|+|++........+.+...+.......
T Consensus 92 ~-~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 V-LEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred e-EEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1 1111100001 11122222222111 23566789999997666566777777776655566
Q ss_pred EEEEEcCC-hhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 275 KILVTTRK-ETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 275 ~IivTtR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
.+|++|.. ..+... ......+++.++++++....+.+.+-..+.... .+.+..|++.++|.+--+.
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAE 220 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 66666533 222221 223458999999999998888776543332111 3456679999999775333
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3e-06 Score=59.10 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=16.9
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccc
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQR 584 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~ 584 (674)
+|++|++++|.|+.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555555
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.5e-06 Score=58.83 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=35.6
Q ss_pred CceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccc
Q 039885 521 TCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPE 568 (674)
Q Consensus 521 ~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~ 568 (674)
++|++|++ ++|.++.+|..|++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l-------~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDL-------SNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEE-------TSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEc-------cCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999 999999999889999999999999999998764
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.07 E-value=0.0002 Score=77.12 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=93.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHF--GKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
...+.|+|..|+|||+|++++++.. .... ..+++++ ..++...+...+... ..+..... ++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~~~~~----~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEEFKEK----YR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHHHHHH----HH
Confidence 3468899999999999999999853 2222 2344553 344555555555432 22222222 22
Q ss_pred CCeEEEEEeCCCCCChh-hH-HHHHHhhcC-CCCCcEEEEEcCChh---------HHhhcCCCCeEeCCCCChHhhHHHH
Q 039885 242 REKFLLVLDDVWTEDYN-KW-ESFRRCLIN-GQRGSKILVTTRKET---------VAGMMESTDVISIKELSERECWSLF 309 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf 309 (674)
+ .-+|||||+...... .+ +.+...+.. ...|..+|+|+.... +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 338999999653211 11 223333322 123456888876421 1122222347899999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 310 ERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 310 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
.+.+-..+...+ +++...|++.+.|.+-.+.
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 988755432222 4556668888888776544
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.07 E-value=9.5e-05 Score=74.50 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=82.6
Q ss_pred ceeechhhHHHHHHHhcC---------CCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 138 DVCGRVEEKSTLKSKLLG---------EGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
.++|.+..+++|.+.... .+-...+....+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 488988777666543211 1100133456788999999999999999976321001111112233322
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC--------hhhHHHHHHhhcCCCCCcEEEEEc
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED--------YNKWESFRRCLINGQRGSKILVTT 280 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IivTt 280 (674)
.++. ....+. ........+... . .-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~----~~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLV----GEYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhh----hhhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 111111 111122222222 1 2488999996421 223444545544433334555665
Q ss_pred CChhHHh------hc-CC-CCeEeCCCCChHhhHHHHHHHhhc
Q 039885 281 RKETVAG------MM-ES-TDVISIKELSERECWSLFERIAFF 315 (674)
Q Consensus 281 R~~~va~------~~-~~-~~~~~l~~L~~~~~~~Lf~~~a~~ 315 (674)
....... .+ .. ...+++++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4332211 01 11 246889999999999999877643
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.07 E-value=6.9e-05 Score=77.98 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=85.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+...+.+..++.... -..++.++|++|+||||+|+.+++.. ... ...++.+. ... +..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHH
Confidence 478999999999999887422 34677789999999999999998742 111 23344433 111 1111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCCCCCcEEEEEcCChh-HHh-hcCCCC
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLINGQRGSKILVTTRKET-VAG-MMESTD 293 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~-~~~~~~ 293 (674)
..+... ..+.+.+-++|+||+... .......+...+.....++++|+||.... +.. ..+...
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001234558899999765 33334445555555556778888886432 111 112234
Q ss_pred eEeCCCCChHhhHHHHHH
Q 039885 294 VISIKELSERECWSLFER 311 (674)
Q Consensus 294 ~~~l~~L~~~~~~~Lf~~ 311 (674)
.+.+...+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 667777777776655543
No 126
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.06 E-value=0.0002 Score=72.81 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=73.8
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeE
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKF 245 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 245 (674)
-+.++|++|+||||+|+.++.............|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999977765321111111112444442 12 222222211 11122223322 235
Q ss_pred EEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhcC--------CCCeEeCCCCChHhhHHH
Q 039885 246 LLVLDDVWTE---------DYNKWESFRRCLINGQRGSKILVTTRKETVAGMME--------STDVISIKELSERECWSL 308 (674)
Q Consensus 246 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~--------~~~~~~l~~L~~~~~~~L 308 (674)
+|+||++... ..+.+..+...+.....+.+||+++.......... ....+++++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 12334556666655555667777765432221111 135789999999999999
Q ss_pred HHHHhhc
Q 039885 309 FERIAFF 315 (674)
Q Consensus 309 f~~~a~~ 315 (674)
+...+-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887643
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=5.2e-05 Score=80.77 Aligned_cols=181 Identities=13% Similarity=0.142 Sum_probs=97.6
Q ss_pred ccCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD 207 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 207 (674)
...++.|+++.+++|.+.+...-.. .-...+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh---
Confidence 3457899999999998876421100 01245668999999999999999998842 222 222221
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------ChhhHHHHHHhhcC-----CC
Q 039885 208 EYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYNKWESFRRCLIN-----GQ 271 (674)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~ 271 (674)
.++. ....+. ....+...+...-.....+|+|||++.. +.+....+...+.. ..
T Consensus 199 -~~l~----~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELV----QKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHh----Hhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111 111110 1111111122222346689999999642 11222223333321 12
Q ss_pred CCcEEEEEcCChhHHh-hc----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 272 RGSKILVTTRKETVAG-MM----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 272 ~gs~IivTtR~~~va~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
.+.+||.||....... .+ .-...+++.+.+.++-.++|..+.....- ...-.+ ..+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCCC
Confidence 3567777776543211 11 12347899999999999999887643221 111233 33666666643
No 128
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00017 Score=80.67 Aligned_cols=194 Identities=16% Similarity=0.208 Sum_probs=110.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....+. ..+..-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 479999999999999887432 3456789999999999999988663110000000 0000000000110
Q ss_pred HH-------hhCC-CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChhHH
Q 039885 217 EA-------LEGS-ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV-TTRKETVA 286 (674)
Q Consensus 217 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~va 286 (674)
.. +.+. .....+.+++.+.+... ..+++-++|+|+++.......+.|...+-.....+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 01112223333332211 234556899999988777778888888876555566654 54444444
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHH
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTI 346 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 346 (674)
.. ......+++.+++.++....+...+-..+.... .+....|++.++|..- |+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 32 223457889999999988877765543332222 2345568899998764 44444
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.0003 Score=78.03 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=113.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--...... ..+....+. +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 369999999999999987432 3457889999999999999998764211100000 000000000 1110
Q ss_pred HH-------hhCC-CCCcccHHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHH
Q 039885 217 EA-------LEGS-ATNLVELNALLLRINE-SIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVA 286 (674)
Q Consensus 217 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 286 (674)
.. +.+. .....++.++.+.+.. -..+++-++|+|++.......++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 0000 0111222222222222 12456668999999887777788888887765556666665543 3333
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
.. ......+++.+++.++....+...+...+.... .+....|++.++|.+-.+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 223457899999999998888877654432222 344566889999988655443
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.02 E-value=4.6e-05 Score=88.80 Aligned_cols=155 Identities=20% Similarity=0.214 Sum_probs=85.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---ccc-ccceEEE-EEeCCCCCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VIN-HFGKRIW-VCVSDPFDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~-~F~~~~w-v~vs~~~~~~~~ 211 (674)
..+|||+.++++++..|.... ..-+.++|++|+||||+|+.+..... +.. -....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 368999999999999987543 23456999999999999999887421 111 1122333 22221
Q ss_pred HHHHHHHhhCCCCCcccH-HHHHHHHHHHc-CCCeEEEEEeCCCCCC-------hhhH-HHHHHhhcCCCCCcEEEEEcC
Q 039885 212 AKAIIEALEGSATNLVEL-NALLLRINESI-AREKFLLVLDDVWTED-------YNKW-ESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~-~~l~~~l~~~~~gs~IivTtR 281 (674)
+........+. +.+...+.+.- .+++.+|++|++.... ..+- ..++..+..+ .-++|-||.
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 00000001111 12222222221 2478999999986531 1111 1233333222 245666666
Q ss_pred ChhHHhhc-------CCCCeEeCCCCChHhhHHHHHHHh
Q 039885 282 KETVAGMM-------ESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 282 ~~~va~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
........ .....+.+++++.++...++....
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 53322111 223589999999999999975443
No 131
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=0.00022 Score=77.10 Aligned_cols=160 Identities=14% Similarity=0.206 Sum_probs=93.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccc-cc-eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINH-FG-KRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
..-+.|+|.+|+|||+||+.+++. +... .. .++|++ ..++..++...+... ..+. +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT------SEKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345999999999999999999985 3232 22 345554 345666666665432 1222 222233
Q ss_pred CCeEEEEEeCCCCC-ChhhH-HHHHHhhcC-CCCCcEEEEEcC-Chh--------HHhhcCCCCeEeCCCCChHhhHHHH
Q 039885 242 REKFLLVLDDVWTE-DYNKW-ESFRRCLIN-GQRGSKILVTTR-KET--------VAGMMESTDVISIKELSERECWSLF 309 (674)
Q Consensus 242 ~kr~LlVlDdv~~~-~~~~~-~~l~~~l~~-~~~gs~IivTtR-~~~--------va~~~~~~~~~~l~~L~~~~~~~Lf 309 (674)
.+.-+|++||+... +...+ +.+...+.. ...|..||+||. ... +...+...-++.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34558999999642 11111 223333221 123457888875 322 1112233458899999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 310 ERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 310 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
.+.+...+..-+ +++...|++.+.|..-.+.
T Consensus 273 ~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCCCCC----HHHHHHHHhccccCHHHHH
Confidence 888754332221 4456668888877654444
No 132
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.96 E-value=0.00018 Score=69.51 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=73.9
Q ss_pred cccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
++-.+++|.+..++.|++--..=-. .....-+.+||..|.|||++++++.+...-.+ .--|.|..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH---------
Confidence 4456799999999888874321111 12345678899999999999999987422211 11222322
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCC----CCCcEEEEEcCChh
Q 039885 214 AIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLING----QRGSKILVTTRKET 284 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~----~~gs~IivTtR~~~ 284 (674)
.+..++..+.+.++. ...||+|++||+.-+ +...+..+++.+..+ .....|..||-.++
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 122334444444442 457999999998543 334678888877654 12334445554444
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00057 Score=76.13 Aligned_cols=194 Identities=18% Similarity=0.195 Sum_probs=110.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.....-...-+ ..+.+.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 479999999999999987533 346678899999999999998865311000000 00000001111111
Q ss_pred HHhhCC--------CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChhHH
Q 039885 217 EALEGS--------ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV-TTRKETVA 286 (674)
Q Consensus 217 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~va 286 (674)
.....+ ......+.++.+.+... ..++.-++|+|++.......+..|...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 00111222333332221 245667889999987776778888877765444555554 44433333
Q ss_pred hh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 287 GM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 287 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
.. ......+++.+++.++....+...+-..+.... .+....|++.++|.+..+...
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 223457889999999998888776644332222 244566888898888654433
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.93 E-value=0.00011 Score=84.80 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=85.8
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc---cccccc-ceEEEEEeCCCCCHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN---DVINHF-GKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~ 213 (674)
+++||+.+++++++.|.... ..-+.++|++|+|||++|+.++... .+-..+ ...+|. ++ ...+.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~- 250 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL- 250 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh-
Confidence 69999999999999887543 2346799999999999999998742 111111 333442 11 11111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHc-CCCeEEEEEeCCCCCC---------hhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 214 AIIEALEGSATNLVELNALLLRINESI-AREKFLLVLDDVWTED---------YNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
. +. ....+.++....+-+.+ ..++.+|++|+++.-. .+.-+.++..+..+ .-++|-+|...
T Consensus 251 ---a---~~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~ 321 (731)
T TIGR02639 251 ---A---GT-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE 321 (731)
T ss_pred ---h---hc-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH
Confidence 0 00 00112222222222222 3467899999986321 12233344444321 23455544432
Q ss_pred hHHhh-------cCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 284 TVAGM-------MESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 284 ~va~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
..... ......+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 1223579999999999999998654
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.92 E-value=0.00037 Score=70.65 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=106.8
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
.++.|.+|+.++..+..++.... .--+..|.|+|-.|.|||.+.+.+++... -..+|+++-..++...++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 35678999999999999887553 22345668999999999999999998642 23589999999999999999
Q ss_pred HHHHhhCCCCCc-------ccHHHHHHHHHH--HcC--CCeEEEEEeCCCCC---ChhhHHHHHHhhcCCCCCcEEEEEc
Q 039885 215 IIEALEGSATNL-------VELNALLLRINE--SIA--REKFLLVLDDVWTE---DYNKWESFRRCLINGQRGSKILVTT 280 (674)
Q Consensus 215 il~~l~~~~~~~-------~~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~IivTt 280 (674)
|+.+......+. .........+.+ ... ++.++||||+++.- +..-...+.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 999985222111 112223333333 122 46899999998432 1111222211111112334455554
Q ss_pred CChhHHhh---cCC--CCeEeCCCCChHhhHHHHHHH
Q 039885 281 RKETVAGM---MES--TDVISIKELSERECWSLFERI 312 (674)
Q Consensus 281 R~~~va~~---~~~--~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
-...-... ++. ..++....-+.++...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43322211 233 336778888999998888663
No 136
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.92 E-value=0.00037 Score=76.07 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=93.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccc--eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFG--KRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
..-+.|+|..|+|||+|++.+++. +...+. .+++++. .++...+...+... ..+.. .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TMEEF----KEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHHHH----HHHHh
Confidence 456899999999999999999985 333332 2445533 34444555554321 12222 23333
Q ss_pred CCeEEEEEeCCCCCCh-h-hHHHHHHhhcC-CCCCcEEEEEcCChh---------HHhhcCCCCeEeCCCCChHhhHHHH
Q 039885 242 REKFLLVLDDVWTEDY-N-KWESFRRCLIN-GQRGSKILVTTRKET---------VAGMMESTDVISIKELSERECWSLF 309 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~-~-~~~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf 309 (674)
+.-+|||||+..... . ..+.+...+.. ...|..||+|+.... +...+....++++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 244899999965321 1 12233332221 123456888876432 1222333458999999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 310 ERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 310 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
.+.+-..+...+ +++..-|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGIDLP----DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCCCC----HHHHHHHHcCcCCCHHHHH
Confidence 998754322111 3456678888888776544
No 137
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00055 Score=75.44 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=92.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHF--GKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
..+.|+|..|+|||.|++.+++. ....+ -.+++++ ..++..++...+... ..+. +++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~~----f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGDS----FRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHHH----HHHHhhc
Confidence 34899999999999999999985 22222 1234543 345555555544321 1122 2233332
Q ss_pred CeEEEEEeCCCCCCh-hhHHH-HHHhhcC-CCCCcEEEEEcCCh---------hHHhhcCCCCeEeCCCCChHhhHHHHH
Q 039885 243 EKFLLVLDDVWTEDY-NKWES-FRRCLIN-GQRGSKILVTTRKE---------TVAGMMESTDVISIKELSERECWSLFE 310 (674)
Q Consensus 243 kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~ 310 (674)
-=+|||||+..... ..|.. |...+.. ...|..|||||... .+...+...-+++|.+.+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34889999965321 23322 3333322 12356788888753 122333445689999999999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 311 RIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 311 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
+++...+-... +++..-|++.+.+..-.+.
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHHHHH
Confidence 88755433222 3455556676666544433
No 138
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00019 Score=69.92 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=106.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+|||-+.-++++.-++..... .++.+--+.++|++|.||||||.-+++... ..+. ++......
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg--vn~k----~tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELG--VNLK----ITSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhc--CCeE----eccccccc---------
Confidence 4799999988888877764332 145677899999999999999999998532 2221 11111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC--------CCCcE-----------EE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING--------QRGSK-----------IL 277 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~-----------Ii 277 (674)
....+...+.. |+ ..=.+.+|.++......-+.+..++-+. ++++| |=
T Consensus 90 -----------K~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 -----------KPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred -----------ChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 11112222211 22 2335666777655433323333332221 23333 33
Q ss_pred EEcCChhHHhhcCC--CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 278 VTTRKETVAGMMES--TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 278 vTtR~~~va~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
.|||...+...+.. .-+.+++.-+.+|-.++..+.+..-+... -++-+.+|+++..|-|--+.-+-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHH
Confidence 68887655544332 34778999999999999988874333221 234577899999999965544433
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.87 E-value=0.00032 Score=69.04 Aligned_cols=190 Identities=16% Similarity=0.166 Sum_probs=116.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEE-EEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIW-VCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i 215 (674)
.+++|-+..+.-+...+.. ...++...+|++|.|||+-|...+...--.+-|.+++- .++|..-... +.++=
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 4689999999999998885 25788999999999999988877664322355655442 3444322111 00000
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHc--CCCe-EEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChhHHhhc-C
Q 039885 216 IEALEGSATNLVELNALLLRINESI--AREK-FLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL-VTTRKETVAGMM-E 290 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~va~~~-~ 290 (674)
..+...+........ ..+. =.||||+++....+.|..+...+......++.| ||+--..+-..+ .
T Consensus 109 ----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 ----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 011111111110000 1133 378899999988899999999988866666654 444333222211 2
Q ss_pred CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 291 STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 291 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
....|..++|.+++...-+...+-..+...++ +..+.|++.++|----+.++-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 23478899999999988888887665554333 344558999988765444443
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.86 E-value=0.00012 Score=85.65 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=85.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---ccccc-ceEEEEEeCCCCCHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VINHF-GKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 212 (674)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999998543 22456999999999999998877421 11111 234442 1 111111
Q ss_pred HHHHHHhhCCCCCcccHHH-HHHHHHHHcCCCeEEEEEeCCCCC--------ChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 213 KAIIEALEGSATNLVELNA-LLLRINESIAREKFLLVLDDVWTE--------DYNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
.+.. ...+.++ +...+.+.-..++.+|++|++..- +.+.-+.++..+..+ .-++|.+|...
T Consensus 248 -------ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred -------ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111 1112222 222222222356889999998421 111122233333322 24556555554
Q ss_pred hHHhh-------cCCCCeEeCCCCChHhhHHHHHHH
Q 039885 284 TVAGM-------MESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 284 ~va~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
..... ......+.+...+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 122457888888988888887643
No 141
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=2e-05 Score=80.78 Aligned_cols=181 Identities=22% Similarity=0.228 Sum_probs=116.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGK-RIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
..+.+.++|.|||||||++-.+.. +...|.. +.++.....-+...+.-.+...++-... +.+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 467899999999999999977766 5567754 4455555555555555555554554321 22234445666778
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhcCCCCeEeCCCCChH-hhHHHHHHHhhcCCCC-
Q 039885 242 REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGMMESTDVISIKELSER-ECWSLFERIAFFNRPS- 319 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~~~~- 319 (674)
++|.++|+||.-+. ...-..+...+..+...-.|+.|+|..... .....+.+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 122233444444555556788888865432 23446777788654 7888887766433322
Q ss_pred CChhhHHHHHHHHHHHcCCChHHHHHHHHHhccC
Q 039885 320 LECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFK 353 (674)
Q Consensus 320 ~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 353 (674)
.-...-.....+|.++..|.|++|...++..+.-
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 1112224556779999999999999998877643
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00043 Score=74.71 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=87.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
..-+.|+|+.|+|||+|++.+++... ..-..+++++ ...+...+...+... .. ..++...+ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 35688999999999999999998532 2222334443 344555555555321 11 22333333 3
Q ss_pred eEEEEEeCCCCCChh--hHHHHHHhhcC-CCCCcEEEEEcCCh---------hHHhhcCCCCeEeCCCCChHhhHHHHHH
Q 039885 244 KFLLVLDDVWTEDYN--KWESFRRCLIN-GQRGSKILVTTRKE---------TVAGMMESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 244 r~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
.-+|++||+...... ..+.+...+.. ...|..||+||... .+...+....++.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 448889998653211 12233333221 12355788888542 1222233346899999999999999988
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHcCCC
Q 039885 312 IAFFNRPSLECEQLEEFGRKIVSKCKGL 339 (674)
Q Consensus 312 ~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 339 (674)
.+-..+..-+ .++..-|+..+.|.
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCC
Confidence 8755432222 33444466666544
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00079 Score=69.29 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=113.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc---cc----------ccccceEEEEEeC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN---DV----------INHFGKRIWVCVS 203 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~----------~~~F~~~~wv~vs 203 (674)
.+++|-+..++.+...+.... -.....++|+.|+||+++|..+.+.. .. ....+-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999887532 34789999999999999997775421 00 1122233444321
Q ss_pred CCCCHHHHHHHHHHHhh--CCCCCcccHHH---HHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE
Q 039885 204 DPFDEYRIAKAIIEALE--GSATNLVELNA---LLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL 277 (674)
Q Consensus 204 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 277 (674)
...+-..+-..-++..+ .........++ +.+.+... ..+++-++|+|++...+....+.+...+-...+..-|+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 00000000011111111 01111122222 22222211 24567799999998888778888888886555443344
Q ss_pred EEcCChhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 278 VTTRKETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 278 vTtR~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+|+....+... .+....+++.++++++..+.+.+....... ......++..++|.|..+....
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHHH
Confidence 44443333332 233568999999999999999876421110 1113468999999997665543
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00088 Score=69.37 Aligned_cols=97 Identities=9% Similarity=0.131 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HH-hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCC
Q 039885 242 REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VA-GMMESTDVISIKELSERECWSLFERIAFFNRPS 319 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 319 (674)
+++-++|+|+++..+....+.+...+-....++.+|+||.+.. +. +..+-...+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 4444567899999888889998888877666777777776653 33 222335689999999999998887643 111
Q ss_pred CChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 320 LECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 320 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 222446789999999876655
No 145
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=0.00012 Score=65.27 Aligned_cols=96 Identities=20% Similarity=0.039 Sum_probs=53.5
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC-CeE
Q 039885 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR-EKF 245 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 245 (674)
|.|+|++|+||||+|+.+++.. ..+ .+.++.+.. . ..........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~--------------~-~~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSEL--------------I-SSYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHH--------------H-TSSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccc--------------c-cccccccccccccccccccccccce
Confidence 5799999999999999999853 211 234443321 1 001112222333333333223 489
Q ss_pred EEEEeCCCCCChhh-----------HHHHHHhhcCCC---CCcEEEEEcCC
Q 039885 246 LLVLDDVWTEDYNK-----------WESFRRCLINGQ---RGSKILVTTRK 282 (674)
Q Consensus 246 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~IivTtR~ 282 (674)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543332 445555554433 23566667665
No 146
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=9.9e-06 Score=82.88 Aligned_cols=129 Identities=16% Similarity=0.064 Sum_probs=60.8
Q ss_pred CceeEEEEEcCCcCCcccc--ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc-ccccccccc
Q 039885 472 EKLRHSMLMLGFEASFPDS--LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM-IREIPKEIE 548 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~lp~~i~ 548 (674)
+.++.|.++.|.+.....+ -..+++|..|.+++|.-. ...+...+..+++|.+|+| ..|. +..--.+..
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L-------~~N~~~~~~~~~~~ 243 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYL-------EANEIILIKATSTK 243 (505)
T ss_pred ccchhcccccccccCCccccchhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhh-------hcccccceecchhh
Confidence 3455555555544221111 123455666666665511 1112334455666666666 5552 111111222
Q ss_pred CCCCCcceeecCCCCcccc--ccccCCCcccEEEeccccccccc--cccc-----cccCccCCeeeeeeeC
Q 039885 549 KLIHLRFLQLRDLMIDELP--ETCCELFNLQTLEIRQRGYYLRR--LPHG-----FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~~~~~--lP~~-----i~~L~~L~~L~l~~~~ 610 (674)
.+..|+.|||++|.+-.+| .-++.|+.|..|+++.| .+.+ +|+. .....+|++|++..|.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST--GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhcccc--CcchhcCCCccchhhhcccccceeeecccCc
Confidence 3455666666666655554 34556666666666665 2322 2333 3444556666665444
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.00088 Score=70.22 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=127.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
....+.|+|..|.|||.|++++.+. ...+.+....+.+ +.+.....++..+... -.+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 4677999999999999999999984 4444442222332 3445555555555332 122334443
Q ss_pred CeEEEEEeCCCCCC-hhhHH-HHHHhhcC-CCCCcEEEEEcCCh---------hHHhhcCCCCeEeCCCCChHhhHHHHH
Q 039885 243 EKFLLVLDDVWTED-YNKWE-SFRRCLIN-GQRGSKILVTTRKE---------TVAGMMESTDVISIKELSERECWSLFE 310 (674)
Q Consensus 243 kr~LlVlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~ 310 (674)
.-=++++||++-.. .+.|+ .+...|.. ...|-.||+|++.. .+...+...-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33488999996521 11222 23333332 12344899998643 233334455689999999999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh---ccCCChHHHHHHHhhhccccccccCCcccChhhHHHH
Q 039885 311 RIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL---RFKRSLRVWQSILDSQMWQLEEFERDYRMDKDELIKL 387 (674)
Q Consensus 311 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L---~~~~~~~~w~~~l~~~~~~l~~~~~~~~~~~~~li~~ 387 (674)
+.+...+-..+.....-++..+-.-..-+.-|+..+..+- ...-+.+.-.++++...-.. . - +..+. |..
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~----~-~-itie~-I~~ 327 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAG----E-K-ITIED-IQK 327 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccc----c-c-CCHHH-HHH
Confidence 9775554433333333344443333333333333332221 11234444445544322111 1 1 33333 333
Q ss_pred HHHhccccC-------CCCc---cHHHHHHHHHHHHHHcCCCccccc
Q 039885 388 WLAQGYIRP-------KENK---ELEMIGEEYFDYLATRSFFQEFET 424 (674)
Q Consensus 388 Wiaeg~i~~-------~~~~---~~e~~~~~~~~~Lv~rsll~~~~~ 424 (674)
-+|+-|--+ .... .+.++|.=...+|.++||.+..+.
T Consensus 328 ~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~ 374 (408)
T COG0593 328 IVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEIGKA 374 (408)
T ss_pred HHHHHhCCCHHHhhccccccccchHHHHHHHHHHHHccCcHHHHHHH
Confidence 445444211 1111 266677766778888888776543
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.70 E-value=0.0003 Score=82.62 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=83.2
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~ 213 (674)
.+|||+.++++++..|.... ...+.++|++|+|||++|+.+.....-.. .....+|.- ++..+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~- 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI- 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh-
Confidence 59999999999999997543 23456899999999999998876421110 012233321 111111
Q ss_pred HHHHHhhCCCCCcccHH-HHHHHHHHHcC-CCeEEEEEeCCCCCC--------hhhHHHHHHhhcCCCCC-cEEEEEcCC
Q 039885 214 AIIEALEGSATNLVELN-ALLLRINESIA-REKFLLVLDDVWTED--------YNKWESFRRCLINGQRG-SKILVTTRK 282 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~-~~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~g-s~IivTtR~ 282 (674)
.+. ....+.+ .+...+...-+ +++.+|++|++..-. .+.-+.++..+ .+| -++|.+|..
T Consensus 242 ------a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~ 311 (852)
T TIGR03346 242 ------AGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTL 311 (852)
T ss_pred ------hcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcH
Confidence 000 0011222 22222222222 468999999996421 11112232222 233 345555554
Q ss_pred hhHHhhc-------CCCCeEeCCCCChHhhHHHHHHHh
Q 039885 283 ETVAGMM-------ESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 283 ~~va~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
......+ .....+.+...+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4332211 223478899999999999887653
No 149
>PF14516 AAA_35: AAA-like domain
Probab=97.67 E-value=0.002 Score=67.21 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=118.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC-----CCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP-----FDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~ 211 (674)
+..|.|...-+++.+.|... ...+.|.|+-.+|||+|...+.+..+. ..+. ++++++... .+...+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHH
Confidence 45678986677777777643 347999999999999999998775332 2343 446766542 245666
Q ss_pred HHHHHHHhhCCCCC-----------cccHHHHHHHHHHHc---CCCeEEEEEeCCCCCC--hhhHHHHHHhhcC----CC
Q 039885 212 AKAIIEALEGSATN-----------LVELNALLLRINESI---AREKFLLVLDDVWTED--YNKWESFRRCLIN----GQ 271 (674)
Q Consensus 212 ~~~il~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~--~~~~~~l~~~l~~----~~ 271 (674)
++.++..+...-.- ..........+.+.+ .+++.+|+||+++..- ....+++...+.. ..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 66666555432110 111223333444432 2689999999996522 1122333333321 11
Q ss_pred ----CCc--EEEEEcCChhHHhh-----cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 272 ----RGS--KILVTTRKETVAGM-----MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 272 ----~gs--~IivTtR~~~va~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..+ -|++.+........ ......++|.+++.+|...|+.++-..- ..+. .++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~~~----~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQEQ----LEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CHHH----HHHHHHHHCCCH
Confidence 111 12222221111111 1123488999999999999998764221 1122 677999999999
Q ss_pred HHHHHHHHHhccC
Q 039885 341 LAVKTIGSLLRFK 353 (674)
Q Consensus 341 Lai~~~~~~L~~~ 353 (674)
.-+..++..+..+
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998654
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0036 Score=60.49 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=114.3
Q ss_pred hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe-CCCCCHHHHHHHHHHHhhCC
Q 039885 144 EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV-SDPFDEYRIAKAIIEALEGS 222 (674)
Q Consensus 144 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~il~~l~~~ 222 (674)
.+..+.+.++.... ..+-+++.++|.-|.|||.+++.+..... + +.++=|.+ .+..+...+...++..+..+
T Consensus 34 a~h~e~l~~l~~~i---~d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~ 106 (269)
T COG3267 34 ADHNEALLMLHAAI---ADGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQ 106 (269)
T ss_pred hhhhHHHHHHHHHH---hcCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccC
Confidence 34444444444332 23556899999999999999995543211 1 11111333 34557778888888888773
Q ss_pred CCCcccH----HHHHHHHHHHc-CCCe-EEEEEeCCCCCChhhHHHHHHhhcCCCCCc---EEEEEcCCh-------hHH
Q 039885 223 ATNLVEL----NALLLRINESI-AREK-FLLVLDDVWTEDYNKWESFRRCLINGQRGS---KILVTTRKE-------TVA 286 (674)
Q Consensus 223 ~~~~~~~----~~~~~~l~~~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~IivTtR~~-------~va 286 (674)
. .... ++..+.+.... +++| ..+++||......+..+.++........++ +|+..-..+ .+.
T Consensus 107 p--~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l 184 (269)
T COG3267 107 P--KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVL 184 (269)
T ss_pred c--cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHH
Confidence 2 2233 33344444444 5677 899999998766666666654433222222 233322111 011
Q ss_pred hhcC-CCCe-EeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 287 GMME-STDV-ISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 287 ~~~~-~~~~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
+... .... |++.|++.++...++.....+...+.+ ---.+....|.....|.|.+|..++.
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 1111 1234 999999999888888777655433221 12234556699999999999998764
No 151
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.0011 Score=71.98 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=90.0
Q ss_pred CceeechhhHHHHHHHhcCCCC-------CCCCceEEEEEEecCCChHHHHHHHHhcCcccc---cccceEEEEEeCCCC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS-------EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI---NHFGKRIWVCVSDPF 206 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~ 206 (674)
.++.|.+..+++|.+.+...-. ..-...+-+.++|++|+|||++|+.+++..... ..+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4688899999999887642100 001234568999999999999999999853211 01123344544431
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCC-------hhh-----HHHHHHhhcCC--C
Q 039885 207 DEYRIAKAIIEALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTED-------YNK-----WESFRRCLING--Q 271 (674)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~ 271 (674)
++ +....+. .......+....+.. -.+++++|+||+++... ... ...+...+... .
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1111000 001122222333322 23578999999996420 011 12333333321 1
Q ss_pred CCcEEEEEcCChhHHh-h-c---CCCCeEeCCCCChHhhHHHHHHHh
Q 039885 272 RGSKILVTTRKETVAG-M-M---ESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 272 ~gs~IivTtR~~~va~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
.+..||.||-...... . . .-...+++...+.++..++|.++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3444555664433211 1 1 124468999999999999998875
No 152
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=0.00036 Score=77.83 Aligned_cols=209 Identities=11% Similarity=0.164 Sum_probs=105.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC---CCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD---PFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~ 213 (674)
.+++|-+..++++..++...... ....+++.|+|++|+||||+++.++... .++..-|++-.. ..+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccch
Confidence 47999999999999998754321 1234679999999999999999998742 233333432110 001111112
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHH---H----cCCCeEEEEEeCCCCC---ChhhHHHHHH-hhcCCCCCcEEEEEcCC
Q 039885 214 AIIEALEGSATNLVELNALLLRINE---S----IAREKFLLVLDDVWTE---DYNKWESFRR-CLINGQRGSKILVTTRK 282 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~---~----l~~kr~LlVlDdv~~~---~~~~~~~l~~-~l~~~~~gs~IivTtR~ 282 (674)
.+..++................... . ..+++.+|+||++.+. ....+..+.. .+...+.-.-|+|||-+
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~ 238 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITES 238 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCC
Confidence 2222222211112222222222221 1 1356789999999432 2233444444 22222222345566632
Q ss_pred hh---------HH-------hhcC--CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChh---hHHHHHHHHHHHcCCChH
Q 039885 283 ET---------VA-------GMME--STDVISIKELSERECWSLFERIAFFNRPSLECE---QLEEFGRKIVSKCKGLPL 341 (674)
Q Consensus 283 ~~---------va-------~~~~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~---~l~~~~~~I~~~c~GlPL 341 (674)
.. .. .... ....+.+.++...+..+.+.+.+-......... .-.+....|+..++|---
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 11 00 1111 123588999999987666665543221100000 012345557777777665
Q ss_pred HHHHHHHHh
Q 039885 342 AVKTIGSLL 350 (674)
Q Consensus 342 ai~~~~~~L 350 (674)
.+...-..+
T Consensus 319 sAIn~LQf~ 327 (637)
T TIGR00602 319 SAINSLQFS 327 (637)
T ss_pred HHHHHHHHH
Confidence 554444443
No 153
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.5e-05 Score=88.32 Aligned_cols=127 Identities=24% Similarity=0.269 Sum_probs=92.6
Q ss_pred CceeEEEEEcCCc--CCcccccc-CCCCceEEEecCCCccc-ccchhHhhccCCceeEEEeccccccccccccccccccc
Q 039885 472 EKLRHSMLMLGFE--ASFPDSLL-NAKKLRSFLISSPYDVF-SSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEI 547 (674)
Q Consensus 472 ~~~r~l~l~~~~~--~~~p~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i 547 (674)
.+++||.+.+... ...|..++ -+|.|++|.+.+-. + ...+-..+.+|++|+.||+ ++++++.+ ..|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDI-------S~TnI~nl-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDI-------SGTNISNL-SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeec-------CCCCccCc-HHH
Confidence 4677777766543 23444444 47999999998865 2 1224556789999999999 99999887 789
Q ss_pred cCCCCCcceeecCCCCccccc--cccCCCcccEEEeccccccccccc---c----ccccCccCCeeeeeeeC
Q 039885 548 EKLIHLRFLQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRRLP---H----GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP---~----~i~~L~~L~~L~l~~~~ 610 (674)
+.|++|+.|.+++-.+..-+. .+.+|++|++||+|.. ....-| . .-..|++||.||++...
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~--~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD--KNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc--ccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999999999998877765443 5789999999999986 222222 1 12348899999996544
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.63 E-value=0.00022 Score=71.73 Aligned_cols=104 Identities=27% Similarity=0.294 Sum_probs=59.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.++|.+|+|||.||..+++.. ..+-..+++++ ..+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 358899999999999999999853 22223445554 4445555555443221 111222 223333333
Q ss_pred EEEEEeCCCCCChhhHHH--HHHhhcC-CCCCcEEEEEcCCh
Q 039885 245 FLLVLDDVWTEDYNKWES--FRRCLIN-GQRGSKILVTTRKE 283 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~IivTtR~~ 283 (674)
||||||+.......|.. +...+.. -..|..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996543344433 4333332 13456799998643
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00043 Score=79.25 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---cccc-cceEEEEEeCCCCCHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VINH-FGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~wv~vs~~~~~~~~~~ 213 (674)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.++.... +-.. .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 58999999999999998643 12346899999999999999886321 1111 23444421 11111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHc-CCCeEEEEEeCCCCC--------ChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 214 AIIEALEGSATNLVELNALLLRINESI-AREKFLLVLDDVWTE--------DYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
+ .+. ....+.+.....+-..+ +.+..+|++|++..- ...+...+..++...+ .-++|.+|....
T Consensus 254 --l---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E 326 (758)
T PRK11034 254 --L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE 326 (758)
T ss_pred --h---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence 1 111 00112222222222222 346679999999631 1122322233332222 245555555443
Q ss_pred HHhhc-------CCCCeEeCCCCChHhhHHHHHHHh
Q 039885 285 VAGMM-------ESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 285 va~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
..... .-...+.++..+.++...++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32111 223589999999999999998653
No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0017 Score=67.66 Aligned_cols=148 Identities=11% Similarity=0.143 Sum_probs=90.2
Q ss_pred ceee-chhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc--------------------ccce
Q 039885 138 DVCG-RVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN--------------------HFGK 196 (674)
Q Consensus 138 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~ 196 (674)
.++| -+..++.+...+.... -.....++|+.|+||||+|+.+.+..--.. |.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 5556677777775322 356779999999999999988855310000 1111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCC
Q 039885 197 RIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES----IAREKFLLVLDDVWTEDYNKWESFRRCLINGQR 272 (674)
Q Consensus 197 ~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 272 (674)
. ++... ......+++.+.+... ..+++=++|+|++...+....+.+...+.....
T Consensus 81 ~-~i~~~--------------------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 H-LVAPD--------------------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred E-Eeccc--------------------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1 11000 0011222222222111 234566799999988777788888888887677
Q ss_pred CcEEEEEcCChh-HHhh-cCCCCeEeCCCCChHhhHHHHHH
Q 039885 273 GSKILVTTRKET-VAGM-MESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 273 gs~IivTtR~~~-va~~-~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
++.+|++|.+.. +... .+....+++.+++.++..+.+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 777777776543 2222 23356899999999999888865
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00043 Score=62.01 Aligned_cols=88 Identities=22% Similarity=0.146 Sum_probs=45.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC-C
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR-E 243 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-k 243 (674)
..+.|+|++|+||||+|+.++.... ......+.+..+........... ............... ....+....+. +
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGEL-RLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHH-HHHHHHHHHHhcC
Confidence 4789999999999999999988532 22123455544433222221111 111111111111222 22233333333 3
Q ss_pred eEEEEEeCCCCCC
Q 039885 244 KFLLVLDDVWTED 256 (674)
Q Consensus 244 r~LlVlDdv~~~~ 256 (674)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997754
No 158
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=1.8e-06 Score=93.18 Aligned_cols=112 Identities=23% Similarity=0.287 Sum_probs=76.3
Q ss_pred hhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccccccCCCcccEEEeccccccccccc
Q 039885 513 LPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLP 592 (674)
Q Consensus 513 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP 592 (674)
+...+.-++.|+.|+| ++|.+...- .+..|.+|+.|||++|.+..+|.--..-.+|+.|.+++| .+.+|-
T Consensus 179 mD~SLqll~ale~LnL-------shNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN--~l~tL~ 248 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNL-------SHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN--ALTTLR 248 (1096)
T ss_pred HHHHHHHHHHhhhhcc-------chhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc--HHHhhh
Confidence 4555667778888888 888887755 677888888888888888888763222234888888888 566663
Q ss_pred cccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccC
Q 039885 593 HGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLG 644 (674)
Q Consensus 593 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~ 644 (674)
+|.+|++|++||+..|-+.+ ...+.-|..|..|+ .|.+-++.
T Consensus 249 -gie~LksL~~LDlsyNll~~--------hseL~pLwsLs~L~-~L~LeGNP 290 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSYNLLSE--------HSELEPLWSLSSLI-VLWLEGNP 290 (1096)
T ss_pred -hHHhhhhhhccchhHhhhhc--------chhhhHHHHHHHHH-HHhhcCCc
Confidence 68888888888886655322 33444455555555 45555543
No 159
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0036 Score=64.40 Aligned_cols=182 Identities=7% Similarity=-0.017 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc---ce-----EEEEEeCCCCCHHHHHHHHHH
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF---GK-----RIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-----~~wv~vs~~~~~~~~~~~il~ 217 (674)
.+.+...+.... -.....+.|+.|+||+++|+.+....--.... .| +-++..+...|...+.-
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p---- 81 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP---- 81 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc----
Confidence 445556555322 34578899999999999998885421000000 00 00000111111110000
Q ss_pred HhhCCCCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhh-cCCCCe
Q 039885 218 ALEGSATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGM-MESTDV 294 (674)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~-~~~~~~ 294 (674)
..+.........++.+.+... ..+++=++|+|+++..+....+.+...+-....++.+|++|.+. .+... .+....
T Consensus 82 -~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 -IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred -ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000011112222333333222 23566688999999888888899998888777777777777654 33322 233568
Q ss_pred EeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 295 ISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 295 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+.+.+++.++..+.+..... . . . ..+...+..++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~---~-~--~---~~~~~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS---A-E--I---SEILTALRINYGRPLLALTF 203 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc---c-C--h---HHHHHHHHHcCCCHHHHHHH
Confidence 99999999999988876531 1 1 1 12445778999999755433
No 160
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0037 Score=64.18 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHH-hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCC
Q 039885 242 REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVA-GMMESTDVISIKELSERECWSLFERIAFFNRPS 319 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 319 (674)
+++=++|+|++...+....+.+...+-....++.+|++|.+. .+. +..+....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 455689999999888888999998887766777777666654 333 333345689999999999988886531 1
Q ss_pred CChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 320 LECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 320 ~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
. ....++..++|.|+.+..+.
T Consensus 182 ---~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 182 ---T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ---c----hHHHHHHHcCCCHHHHHHHh
Confidence 1 12457899999999876553
No 161
>PRK10536 hypothetical protein; Provisional
Probab=97.58 E-value=0.00067 Score=66.48 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=75.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe----CC-----CCC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV----SD-----PFD 207 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~-----~~~ 207 (674)
..+.+|......+..+|.. ..++.++|++|.|||+||.++..+.-..+.|+.++-+.- .+ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467888889999998863 238999999999999999888764222344544333211 11 001
Q ss_pred HHH----HHHHHHHHhhCCCCCcccHHHHHH----H----HHHHcCCCeE---EEEEeCCCCCChhhHHHHHHhhcCCCC
Q 039885 208 EYR----IAKAIIEALEGSATNLVELNALLL----R----INESIAREKF---LLVLDDVWTEDYNKWESFRRCLINGQR 272 (674)
Q Consensus 208 ~~~----~~~~il~~l~~~~~~~~~~~~~~~----~----l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 272 (674)
..+ .++-+...+..-. .....+.... . =-.+++++.+ +||+|++.+.+......+ +...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~---ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF---LTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHH---HhhcCC
Confidence 111 1222222221100 0011111110 0 0134566554 999999988766544444 444567
Q ss_pred CcEEEEEcCCh
Q 039885 273 GSKILVTTRKE 283 (674)
Q Consensus 273 gs~IivTtR~~ 283 (674)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 89999986533
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=1e-05 Score=69.82 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCcccccc
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPET 569 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~ 569 (674)
.+.....|....+++|. +..+++.+-..++.++.|+| ++|.+..+|..+..++.||.|+++.|.+...|.-
T Consensus 48 ~l~~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl-------~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNL-------ANNEISDVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred HHhCCceEEEEecccch--hhhCCHHHhhccchhhhhhc-------chhhhhhchHHHhhhHHhhhcccccCccccchHH
Confidence 34555667777777776 66655555556667788888 7888888887788888888888888888888877
Q ss_pred ccCCCcccEEEeccccccccccccc
Q 039885 570 CCELFNLQTLEIRQRGYYLRRLPHG 594 (674)
Q Consensus 570 i~~L~~L~~L~l~~~~~~~~~lP~~ 594 (674)
|..|.+|-.||..+| ...++|-.
T Consensus 119 i~~L~~l~~Lds~~n--a~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPEN--ARAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCC--ccccCcHH
Confidence 777888888887777 56666655
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0029 Score=64.95 Aligned_cols=96 Identities=8% Similarity=0.076 Sum_probs=67.6
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCC
Q 039885 242 REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGM-MESTDVISIKELSERECWSLFERIAFFNRPS 319 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 319 (674)
+++=++|+|++...+...-+.+...+-.-..++.+|++|.+. .+... .+-...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 566799999998887778888888887766677777766643 33322 2335688999999999988886531 1
Q ss_pred CChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 320 LECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 320 ~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
. ...+..++..++|.|+.+..+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1125568999999998776554
No 164
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00016 Score=75.54 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=63.4
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccc-ccccccccccCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRG-MIREIPKEIEKL 550 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~-~l~~lp~~i~~L 550 (674)
..+++|.++.+.+..+| .+ ..+|++|.+.++.. + ..+|+.+. .+|+.|++ ++| .+..+|++
T Consensus 52 ~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~n-L-tsLP~~LP--~nLe~L~L-------s~Cs~L~sLP~s---- 113 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VL--PNELTEITIENCNN-L-TTLPGSIP--EGLEKLTV-------CHCPEISGLPES---- 113 (426)
T ss_pred cCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCC-c-ccCCchhh--hhhhheEc-------cCcccccccccc----
Confidence 34556777776666666 11 23577777766541 2 22344332 46777777 666 45556653
Q ss_pred CCCcceeecCCC---CccccccccCC------------------CcccEEEeccccccccccccccccCccCCeeeeee
Q 039885 551 IHLRFLQLRDLM---IDELPETCCEL------------------FNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFV 608 (674)
Q Consensus 551 ~~Lr~L~L~~~~---i~~lP~~i~~L------------------~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~ 608 (674)
|+.|+++++. +..||+++..| .+|++|++++| . ...+|..+. .+|++|.+..
T Consensus 114 --Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c-~-~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 114 --VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGC-S-NIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred --cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCC-C-cccCccccc--ccCcEEEecc
Confidence 4444454433 45666665544 36788888887 3 334554443 4677777643
No 165
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.53 E-value=0.0021 Score=68.41 Aligned_cols=181 Identities=17% Similarity=0.147 Sum_probs=96.1
Q ss_pred ccCceeechhhHHHHHHHhcCCCC-------CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGS-------EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD 207 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 207 (674)
.-.++.|.+..+++|.+.+...-. ..-...+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~----- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG----- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh-----
Confidence 334689999888888876532100 001245678899999999999999999852 2222 12211
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------Chh---hHHHHHHhhcC--CC
Q 039885 208 EYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYN---KWESFRRCLIN--GQ 271 (674)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 271 (674)
..+ .....+. ....+.+.+.......+.+|+||+++.. +.. .+..+...+.. ..
T Consensus 213 -s~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 1111111 1112222233333467889999997531 111 12222222221 12
Q ss_pred CCcEEEEEcCChhHHhh--c---CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 272 RGSKILVTTRKETVAGM--M---ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 272 ~gs~IivTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
.+..||+||........ . .-...+++...+.++...+|..+..... ....-++.+ +++.+.|+-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~~----la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLED----FVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHHH----HHHHcCCCC
Confidence 45678888775432211 1 1244688888888888888876543222 122223333 566666554
No 166
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=1.5e-05 Score=86.19 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=62.8
Q ss_pred EEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceee
Q 039885 479 LMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQL 558 (674)
Q Consensus 479 l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L 558 (674)
+..|.+..+-..+..+.+|..|++.+|. +... ...+..+.+|++|++ ++|.|..+. .+..|..|+.|++
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~--i~~i-~~~l~~~~~L~~L~l-------s~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNK--IEKI-ENLLSSLVNLQVLDL-------SFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccc--hhhc-ccchhhhhcchheec-------ccccccccc-chhhccchhhhee
Confidence 3334333322334555666666666665 4332 222455666666666 666666543 3555555666666
Q ss_pred cCCCCccccccccCCCcccEEEeccccccccccccc-cccCccCCeeeeeee
Q 039885 559 RDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVV 609 (674)
Q Consensus 559 ~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~ 609 (674)
++|.|..++ .+..+.+|+.+++++| .+..++.. +..+.+|+.+.+..+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n--~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYN--RIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcc--hhhhhhhhhhhhccchHHHhccCC
Confidence 666666554 2344666666666666 45555443 355556666655333
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.50 E-value=0.00094 Score=78.24 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=37.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|||+.+++++++.|.... ...+.++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999997543 234669999999999999988774
No 168
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.48 E-value=0.0013 Score=76.14 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=72.1
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|-+..++.|...+..... .+.....++.++|+.|+|||+||+.++... +...+.++.+.-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 3488999888888888763210 012245578999999999999999998732 23345555554222111
Q ss_pred HHHHHhhCCCC--CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC
Q 039885 214 AIIEALEGSAT--NLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING 270 (674)
Q Consensus 214 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 270 (674)
+...++.... .......+.+.++ ....-+++||+++...++.++.+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1111222111 1111222333332 233459999999988888888888877654
No 169
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.47 E-value=0.0017 Score=75.61 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=83.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+.+. ....|- -++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 458899999999988764221000123357999999999999999999884 223332 1233332233222110
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChh----hHHHHHHhhcC--------C-------CCCcEEE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYN----KWESFRRCLIN--------G-------QRGSKIL 277 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~Ii 277 (674)
...........+...+.... .++-+|+||+++..... ....+...+.. . ..+.-+|
T Consensus 393 ----~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ----RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ----CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 00000111222333343332 23448899998654221 11223332211 0 0123334
Q ss_pred EEcCChh-HHh-hcCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 278 VTTRKET-VAG-MMESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 278 vTtR~~~-va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
.||.... +.. .......+++.+++.++-..++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4443321 111 11223578888888888877776543
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.47 E-value=0.0026 Score=58.90 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=76.8
Q ss_pred echhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc----ccc--------------cccceEEEEEe
Q 039885 141 GRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN----DVI--------------NHFGKRIWVCV 202 (674)
Q Consensus 141 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~--------------~~F~~~~wv~v 202 (674)
|-+...+.+...+.... -...+.++|+.|+||+++|..+.+.. ... ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 34556666777776432 34568999999999999998875521 110 11222333332
Q ss_pred CCC---CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEE
Q 039885 203 SDP---FDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVT 279 (674)
Q Consensus 203 s~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivT 279 (674)
... ...+++. ++...+.... ..++.=++|+||++....+.+..+...+-....++++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 1222221 2222222111 1245668999999998888999999999888888999888
Q ss_pred cCChh-HH-hhcCCCCeEeCCCCC
Q 039885 280 TRKET-VA-GMMESTDVISIKELS 301 (674)
Q Consensus 280 tR~~~-va-~~~~~~~~~~l~~L~ 301 (674)
|.+.. +. +..+-...+.+.+|+
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88654 22 222334456666553
No 171
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=4.9e-06 Score=89.89 Aligned_cols=126 Identities=21% Similarity=0.169 Sum_probs=96.4
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
+.++-..++++|.+..+..++.-++.|++|+++.|. +... +.+..++.|+.||| +.|.+..+|.-=..=
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v--~~Lr~l~~LkhLDl-------syN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKV--DNLRRLPKLKHLDL-------SYNCLRHVPQLSMVG 231 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhh--HHHHhccccccccc-------ccchhccccccchhh
Confidence 346667778888776666677778899999999998 5542 25888999999999 999998888522122
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEecccccccccccc--ccccCccCCeeeeeeeC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~ 610 (674)
.+|..|.|++|.+++| ..|.+|.+|+.||++.| .+....+ -+|.|..|+.|++-+|.
T Consensus 232 c~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN--ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN--LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhheeeeecccHHHhh-hhHHhhhhhhccchhHh--hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 3499999999999888 46899999999999998 4544322 26888889999986555
No 172
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.46 E-value=1.8e-05 Score=78.89 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=115.3
Q ss_pred CceeEEEEEcCCcCC-----ccccccCCCCceEEEecCCCcccccc-------------hhHhhccCCceeEEEeccccc
Q 039885 472 EKLRHSMLMLGFEAS-----FPDSLLNAKKLRSFLISSPYDVFSSV-------------LPRLFDQLTCLRTLKIVAHDR 533 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~l~~Lr~L~L~~~~~ 533 (674)
++++.+.++.|-+.. +-.-+.++..|+.|.+.+|. +... ......+-+.|||+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~----- 164 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC----- 164 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe-----
Confidence 378888888887642 22345667888888888876 2211 1112345567888888
Q ss_pred ccccccccccc-----ccccCCCCCcceeecCCCCc-----cccccccCCCcccEEEecccccccc----ccccccccCc
Q 039885 534 RWSRGMIREIP-----KEIEKLIHLRFLQLRDLMID-----ELPETCCELFNLQTLEIRQRGYYLR----RLPHGFGRLV 599 (674)
Q Consensus 534 ~~~~~~l~~lp-----~~i~~L~~Lr~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~~~~----~lP~~i~~L~ 599 (674)
++|.+..-+ ..+...+.|..+.++.|.|. -+-..+..+++|++|||+.| .+.. .+-..+..++
T Consensus 165 --~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 165 --GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWP 241 (382)
T ss_pred --eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccc
Confidence 887765533 34556678888888888764 24456778889999999988 4332 2444567778
Q ss_pred cCCeeeeeeeCccCCCCCCCCCCCChhhccC-cccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 600 NLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ-LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 600 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~-L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+|+.|++..+.++. . ........+.. .+.|. .|.+.+++-..+...+....+..++.|..|+|+.|+
T Consensus 242 ~L~El~l~dcll~~----~-Ga~a~~~al~~~~p~L~-vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLEN----E-GAIAFVDALKESAPSLE-VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeeccccccccc----c-cHHHHHHHHhccCCCCc-eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 88888886665433 1 01112222221 33444 454444443333444555667779999999998886
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.45 E-value=0.0053 Score=61.77 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=65.9
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH--------
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII-------- 216 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il-------- 216 (674)
-++++..++... .-|.+.|++|+|||+||+.+... ... ..+.++++...+..+++....
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 345555555532 23678999999999999999862 211 234566666555555443211
Q ss_pred HHh----hCCCC---CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC----------------CCC
Q 039885 217 EAL----EGSAT---NLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING----------------QRG 273 (674)
Q Consensus 217 ~~l----~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~g 273 (674)
..+ ..... ...... .+....+ +...+++|++...+.+.+..+...+..+ .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g----~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~ 151 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDN----RLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPE 151 (262)
T ss_pred HHHHHHhhhhhcccceeecCc----hHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCC
Confidence 000 00000 000000 1111111 3468999999887777777777766432 125
Q ss_pred cEEEEEcCCh
Q 039885 274 SKILVTTRKE 283 (674)
Q Consensus 274 s~IivTtR~~ 283 (674)
.+||+|+-..
T Consensus 152 frvIaTsN~~ 161 (262)
T TIGR02640 152 FRVIFTSNPV 161 (262)
T ss_pred CEEEEeeCCc
Confidence 5788887643
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.0024 Score=71.87 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=94.7
Q ss_pred CceeechhhHHHHHHH---hcCCCCC---CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSK---LLGEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
.+++|.++.++++.+. +...... .....+-|.++|++|+|||+||+.++.... . -++.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~-----p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--V-----PFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C-----CeeeccH----HH
Confidence 4688987666555554 3322110 012345689999999999999999987421 1 1233321 11
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC----------hhhH----HHHHHhhcC--CCCCc
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED----------YNKW----ESFRRCLIN--GQRGS 274 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~gs 274 (674)
+. ....+ .....+...+.......+++|+|||++... ...+ ..+...+.. ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 011223334445556788999999995321 1122 222222221 23455
Q ss_pred EEEEEcCChhHHh-hc----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC
Q 039885 275 KILVTTRKETVAG-MM----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG 338 (674)
Q Consensus 275 ~IivTtR~~~va~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G 338 (674)
.||.||....... .+ .-...+.+...+.++-.+++..++-.... .. ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 6676776543222 11 12357888888888888888887643111 11 2234557778777
No 175
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.43 E-value=0.00081 Score=72.01 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=86.8
Q ss_pred CceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.+..+++|.+.+.-.-.. .-...+.+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35789999998888876421100 0123456889999999999999999984 33333 1122111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------Chhh---HHHHHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYNK---WESFRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~---~~~l~~~l~~--~~~g 273 (674)
+. ....+. ....+...+.....+.+.+|+||+++.. +.+. ...+...+.. ...+
T Consensus 253 -L~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 111110 1111222222233456789999987421 0111 1122222221 1345
Q ss_pred cEEEEEcCChhHHhh-c----CCCCeEeCCCCChHhhHHHHHHHhh
Q 039885 274 SKILVTTRKETVAGM-M----ESTDVISIKELSERECWSLFERIAF 314 (674)
Q Consensus 274 s~IivTtR~~~va~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~ 314 (674)
.+||+||........ + .-...+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888875443322 1 1234788999999999999987754
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.42 E-value=0.0031 Score=67.27 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=74.3
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeE
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKF 245 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 245 (674)
++.|+|+-++||||+++.+...- .+. .+++...+......-+.+.+. .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 99999999999999997666531 111 455544332111111111111 11111112788
Q ss_pred EEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh-----c-CCCCeEeCCCCChHhhHHH
Q 039885 246 LLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGM-----M-ESTDVISIKELSERECWSL 308 (674)
Q Consensus 246 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~-----~-~~~~~~~l~~L~~~~~~~L 308 (674)
.|+||.|... ..|......+.+.++. +|++|+-+...... . +-...+++.||+-.|...+
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9999999765 6788888888776655 88888876653322 1 3355899999999998664
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6.4e-05 Score=85.13 Aligned_cols=107 Identities=22% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc--ccccccCCCCCcceeecCCCCcccccccc
Q 039885 494 AKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE--IPKEIEKLIHLRFLQLRDLMIDELPETCC 571 (674)
Q Consensus 494 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~--lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~ 571 (674)
-.+|+.|++.|......+.+...-..||+|+.|.+ ++-.+.. +-.-..++++|+.||+|+|+++.+ ..|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i-------~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI-------SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEe-------cCceecchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 35788888888663334434444467788888888 6654432 334445778888889999888888 7788
Q ss_pred CCCcccEEEeccccccccccc--cccccCccCCeeeeeeeC
Q 039885 572 ELFNLQTLEIRQRGYYLRRLP--HGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 572 ~L~~L~~L~l~~~~~~~~~lP--~~i~~L~~L~~L~l~~~~ 610 (674)
+|+|||+|-+++= .+..-+ ..+-+|++|++||++.-.
T Consensus 193 ~LknLq~L~mrnL--e~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 193 RLKNLQVLSMRNL--EFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccccHHHHhccCC--CCCchhhHHHHhcccCCCeeeccccc
Confidence 8888888888764 233222 246788888888885443
No 178
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.40 E-value=0.0013 Score=70.38 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=85.6
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH-H
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI-I 216 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-l 216 (674)
.++||++.++.+...+..... |.|.|++|+|||+||+.+.........|.... +..+ .+.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~h--------VLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ft---tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGES--------VFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFS---TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCCC--------EEEECCCChhHHHHHHHHHHHhcccCcceeee-eeec---CcHHhcCcHHH
Confidence 489999999999999886543 88999999999999999987422222343211 0101 122322211 1
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCC---CeEEEEEeCCCCCChhhHHHHHHhhcCCC---------CCcEEEEEcCChh
Q 039885 217 EALEGSATNLVELNALLLRINESIAR---EKFLLVLDDVWTEDYNKWESFRRCLINGQ---------RGSKILVTTRKET 284 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~IivTtR~~~ 284 (674)
...... ....+...+ ..-++++|+++.........+...+.... -..++|+++.++-
T Consensus 89 ~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 111000 001111111 12289999999988877777777763221 1235666555532
Q ss_pred HH------hhcCC-CCeEeCCCCChHh-hHHHHHHH
Q 039885 285 VA------GMMES-TDVISIKELSERE-CWSLFERI 312 (674)
Q Consensus 285 va------~~~~~-~~~~~l~~L~~~~-~~~Lf~~~ 312 (674)
.. ..+.- .-.+.+++++.++ -.+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 21 11111 2367899997544 47777653
No 179
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=1.8e-05 Score=68.38 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=75.4
Q ss_pred hhccCCceeEEEeccccccccccccccccccccCC-CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccc
Q 039885 516 LFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL-IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHG 594 (674)
Q Consensus 516 ~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L-~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~ 594 (674)
.+.....|...+| ++|.+..+|+.+... +.+..|+|++|.|+.+|+.+..++.|+.|+++.| .+...|..
T Consensus 48 ~l~~~~el~~i~l-------s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N--~l~~~p~v 118 (177)
T KOG4579|consen 48 MLSKGYELTKISL-------SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN--PLNAEPRV 118 (177)
T ss_pred HHhCCceEEEEec-------ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC--ccccchHH
Confidence 4567778888999 999999999888755 4899999999999999999999999999999999 68899999
Q ss_pred cccCccCCeeeeeeeC
Q 039885 595 FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 595 i~~L~~L~~L~l~~~~ 610 (674)
|..|.+|-.|+.-.+.
T Consensus 119 i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENA 134 (177)
T ss_pred HHHHHhHHHhcCCCCc
Confidence 9889999988884443
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.37 E-value=0.0021 Score=75.37 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=76.8
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|.+..++.+...+..... .++....++.++|+.|+|||++|+.+.+... ..-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-h----
Confidence 3589999999988888753210 0022345788999999999999999986321 1112233444443111 1
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHcC-CCeEEEEEeCCCCCChhhHHHHHHhhcCC----C-------CCcEEEEEcC
Q 039885 214 AIIEALEGSATNLVELNALLLRINESIA-REKFLLVLDDVWTEDYNKWESFRRCLING----Q-------RGSKILVTTR 281 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~IivTtR 281 (674)
.....+.+..+.-...+. ...+.+.++ ...-+|+|||+.......+..+...+..+ + ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222221111110 011222222 22359999999888888888888777543 1 2233777876
Q ss_pred C
Q 039885 282 K 282 (674)
Q Consensus 282 ~ 282 (674)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=8.3e-05 Score=69.22 Aligned_cols=34 Identities=35% Similarity=0.647 Sum_probs=27.6
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccc-cccceEEE
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVI-NHFGKRIW 199 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 199 (674)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999865443 45777775
No 182
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00044 Score=72.38 Aligned_cols=87 Identities=24% Similarity=0.365 Sum_probs=59.9
Q ss_pred ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc-cccccccccCCCCCcceeecCC-CCccccc
Q 039885 491 LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM-IREIPKEIEKLIHLRFLQLRDL-MIDELPE 568 (674)
Q Consensus 491 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~lp~~i~~L~~Lr~L~L~~~-~i~~lP~ 568 (674)
+..+.+++.|+++++. +.. +|. + ..+|+.|.+ ++|. +..+|..+. .+|++|++++| .+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c~--L~s-LP~-L--P~sLtsL~L-------snc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD--IES-LPV-L--PNELTEITI-------ENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC--Ccc-cCC-C--CCCCcEEEc-------cCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 4557889999999886 554 342 2 235899999 7654 667887663 58999999998 5888887
Q ss_pred cccCCCcccEEEecccc-ccccccccccccC
Q 039885 569 TCCELFNLQTLEIRQRG-YYLRRLPHGFGRL 598 (674)
Q Consensus 569 ~i~~L~~L~~L~l~~~~-~~~~~lP~~i~~L 598 (674)
+ |+.|++..+. ..+..+|.++..|
T Consensus 113 s------Le~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 113 S------VRSLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred c------cceEEeCCCCCcccccCcchHhhe
Confidence 5 5556665540 2467788765544
No 183
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00054 Score=73.97 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=110.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc--cccceEEEEEeCCCCCHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI--NHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
+++||-+.-...|...+.... -...-...|+-|+||||+|+-++...--. ...+ ++..-...+.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e---------PC~~C~~Ck~ 81 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE---------PCGKCISCKE 81 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC---------cchhhhhhHh
Confidence 367999999999999987543 34456688999999999998776421100 1111 1111111111
Q ss_pred HHHH--------hhCCCCCcccHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE-EcCChh
Q 039885 215 IIEA--------LEGSATNLVELNALLLRINESI-AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV-TTRKET 284 (674)
Q Consensus 215 il~~--------l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~ 284 (674)
|... -..+.....+.+++.+.+.-.- +++-=+.|+|+|+-.....|..+..-+-........|. ||-...
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 2111 0011112233444444433222 34445889999988777888888877765555555555 444444
Q ss_pred HH-hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHH
Q 039885 285 VA-GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLA 342 (674)
Q Consensus 285 va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 342 (674)
+. +..+....|.++.++.++-...+...+-..+...+ .+....|++..+|..-=
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLRD 216 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChhh
Confidence 43 33345678999999999998888887654444333 23344477777776543
No 184
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.33 E-value=0.00076 Score=77.87 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=87.9
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.++.. ....|-. +..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEE---EEcCCCCCHHHhccch
Confidence 3468999999999998886321100224457999999999999999999873 2223322 3334333332222111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhh----HHHHHHhhcCC---------------CCCcEE
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNK----WESFRRCLING---------------QRGSKI 276 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~I 276 (674)
-...+ .....+...+... ....-+++||+++...... ...+...+... -...-+
T Consensus 396 ~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00010 1112233333332 2244578999996643221 23444444321 122333
Q ss_pred EEEcCChhHHhh-cCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 277 LVTTRKETVAGM-MESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 277 ivTtR~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
|.|+....+... .+-..++.+.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444433222111 1223578888888888877776654
No 185
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.32 E-value=0.0064 Score=67.29 Aligned_cols=186 Identities=14% Similarity=0.141 Sum_probs=95.1
Q ss_pred cCceeechhhHHHHHHHhc---CCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLL---GEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..++++.+++. .... ......+-+.++|++|+|||+||+.++.... .. ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----H
Confidence 3468898877666655432 1110 0012334588999999999999999987422 12 222221 1
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC----------hhhHHH----HHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED----------YNKWES----FRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~g 273 (674)
++. ....+. ....+...+.......+.+|+|||++... ...+.. +...+.. ...+
T Consensus 123 ~~~----~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 111110 11223333334444567899999995421 111222 2222221 2234
Q ss_pred cEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCC-hHHHHHH
Q 039885 274 SKILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGL-PLAVKTI 346 (674)
Q Consensus 274 s~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 346 (674)
..||.||.... +.+...-...+.+...+.++-.++|..+.-.... ....++ ..+++.+.|. +--|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~l----~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVDL----KAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-CcchhH----HHHHHhCCCCCHHHHHHH
Confidence 45666665433 1111122457888888888888888876533221 111222 3577777774 3334433
No 186
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.31 E-value=0.014 Score=60.80 Aligned_cols=167 Identities=11% Similarity=0.131 Sum_probs=94.3
Q ss_pred hhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc--ccc---ceEEEEEeCCCCCHHHHHHHHHH
Q 039885 143 VEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI--NHF---GKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 143 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F---~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
+.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+..+-. ..+ ..-+|-......-...++..|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 345567777777543 2467899999999999999999987743322 111 12223333322223445555555
Q ss_pred HhhCCCC-----------------------------C-------------------------------------cccHHH
Q 039885 218 ALEGSAT-----------------------------N-------------------------------------LVELNA 231 (674)
Q Consensus 218 ~l~~~~~-----------------------------~-------------------------------------~~~~~~ 231 (674)
++..... . ..+.++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
T PF07693_consen 79 QLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEE 158 (325)
T ss_pred HHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHH
Confidence 4422100 0 001111
Q ss_pred HHHHHHHHcC--CCeEEEEEeCCCCCChhhHHHHHHhhcC--CCCCcEEEEEcCChhHHhhcCC----------------
Q 039885 232 LLLRINESIA--REKFLLVLDDVWTEDYNKWESFRRCLIN--GQRGSKILVTTRKETVAGMMES---------------- 291 (674)
Q Consensus 232 ~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~IivTtR~~~va~~~~~---------------- 291 (674)
....+.+.+. ++|.++|+||++...++...++...+.. ..++..+|+..-.+.+......
T Consensus 159 ~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 159 LISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred HHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH
Confidence 3334455553 5899999999988666544444443332 2256666666655554443211
Q ss_pred ---CCeEeCCCCChHhhHHHHHHH
Q 039885 292 ---TDVISIKELSERECWSLFERI 312 (674)
Q Consensus 292 ---~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
.-++.+++.+..+-..+|...
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHH
Confidence 126888888887766666555
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00065 Score=76.36 Aligned_cols=122 Identities=18% Similarity=0.321 Sum_probs=77.8
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF---GKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 210 (674)
..++|-+..++.+.+.+..... .++....+...+|+.|||||-||+.+... -| +..+-++.|.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSE------ 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSE------ 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHH------
Confidence 3589999999999998753221 12456778889999999999999988762 34 2333333332
Q ss_pred HHH-HHHHHhhCCCCCcccHHHHHHHHHHHcCCCeE-EEEEeCCCCCChhhHHHHHHhhcCC
Q 039885 211 IAK-AIIEALEGSATNLVELNALLLRINESIAREKF-LLVLDDVWTEDYNKWESFRRCLING 270 (674)
Q Consensus 211 ~~~-~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 270 (674)
... .-+..+-+.++.-...++ -..|-+..+.++| +|.||++....++.++-|...|.++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 221 122333333332211111 2234455667777 8889999988888888888888775
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00048 Score=67.16 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=29.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV 202 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 202 (674)
-.++|+|..|.|||||+..+..+ ....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 35889999999999999988874 6678877776654
No 189
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.00095 Score=66.88 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=54.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.++|++|+|||.||..+.+.. ......++|+. ..+++..+..... .......... +. +-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~~----l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIAK----LD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHHH----Hh-cC
Confidence 348999999999999999998742 22222344553 3455555543321 1122222222 21 33
Q ss_pred EEEEEeCCCCCChhhHH--HHHHhhcCCCCCcEEEEEcCCh
Q 039885 245 FLLVLDDVWTEDYNKWE--SFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~IivTtR~~ 283 (674)
-||||||+.......|. .+...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654332322 2434333211123588888754
No 190
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=5.3e-05 Score=81.87 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=85.6
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
....+..+++..|.+..+...+..+++|+.|++++|. +..+ .. +..++.|+.|++ .+|.+..++ .+..
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--I~~i-~~-l~~l~~L~~L~l-------~~N~i~~~~-~~~~ 160 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--ITKL-EG-LSTLTLLKELNL-------SGNLISDIS-GLES 160 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc--cccc-cc-hhhccchhhhee-------ccCcchhcc-CCcc
Confidence 4567889999999988776557889999999999998 6553 22 677888999999 999988865 3556
Q ss_pred CCCCcceeecCCCCcccccc-ccCCCcccEEEeccc
Q 039885 550 LIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQR 584 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~ 584 (674)
+..|+++++++|.+..++.. ...+.+|+.+++.+|
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 99999999999999988765 588899999999988
No 191
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.25 E-value=0.0018 Score=76.20 Aligned_cols=136 Identities=16% Similarity=0.260 Sum_probs=79.0
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|.+..++.+...+..... .+.....++.++|+.|+|||++|+.+.... ...-...+.++.+.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 3589999999999998864211 002235678899999999999999998631 11112233444443222111
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEE
Q 039885 214 AIIEALEGSATNL---VELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVT 279 (674)
Q Consensus 214 ~il~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivT 279 (674)
...+.+..+.- .....+...++. ....+|+||++....++.+..|...+..+. ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11121221111 111223333322 233489999999888888888888875541 23447777
Q ss_pred cCC
Q 039885 280 TRK 282 (674)
Q Consensus 280 tR~ 282 (674)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 192
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.25 E-value=0.014 Score=61.07 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=118.7
Q ss_pred chhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHH-HHHhcCcccccccceEEEEEeCCCC---CHHHHHHHHHH
Q 039885 142 RVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLA-QFVYNDNDVINHFGKRIWVCVSDPF---DEYRIAKAIIE 217 (674)
Q Consensus 142 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~vs~~~---~~~~~~~~il~ 217 (674)
|.+..++|..||.... -..|.|.|+-|.||+.|+ .++..+.+- +..+++.+-. +-..+.+.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5678899999998654 368999999999999999 777765332 4444443321 22334444444
Q ss_pred Hhh-----------------------CCCCC--cccHHHHH-------HHHHH-------------------HcC---CC
Q 039885 218 ALE-----------------------GSATN--LVELNALL-------LRINE-------------------SIA---RE 243 (674)
Q Consensus 218 ~l~-----------------------~~~~~--~~~~~~~~-------~~l~~-------------------~l~---~k 243 (674)
+++ +.... .....++. ..|++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 442 11111 01111111 11221 111 23
Q ss_pred eEEEEEeCCCCCCh---hhHHHH---HHhhcCCCCCcEEEEEcCChhHHhh----cC--CCCeEeCCCCChHhhHHHHHH
Q 039885 244 KFLLVLDDVWTEDY---NKWESF---RRCLINGQRGSKILVTTRKETVAGM----ME--STDVISIKELSERECWSLFER 311 (674)
Q Consensus 244 r~LlVlDdv~~~~~---~~~~~l---~~~l~~~~~gs~IivTtR~~~va~~----~~--~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
+-+||+|+.-.... .-|+.+ ...+-. .+-..||++|-+...... +. ..+.+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 67999999854211 122222 122322 234578888776544433 32 245788999999999999988
Q ss_pred HhhcCCCC------------CCh----hhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHH
Q 039885 312 IAFFNRPS------------LEC----EQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRV 358 (674)
Q Consensus 312 ~a~~~~~~------------~~~----~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~ 358 (674)
+.-..... ... .....-....++.+||=-.-+..+++.++...++++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 87543110 000 112233455789999999999999999998866543
No 193
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.00049 Score=68.01 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=55.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.++|.+|+|||+||.++++.. ......++++++. +++..|-...... ...... + +.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~~---l-~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEKF---L-QEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHHH---H-HHh-cCC
Confidence 568999999999999999999853 2333344566443 4555444433211 111111 2 222 355
Q ss_pred EEEEEeCCCCCChhhHHH--HHHhhcCC-CCCcEEEEEcC
Q 039885 245 FLLVLDDVWTEDYNKWES--FRRCLING-QRGSKILVTTR 281 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IivTtR 281 (674)
-||||||+.......|.. +...+... .+.--+||||-
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 699999995543334433 43333321 22234677775
No 194
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.013 Score=60.85 Aligned_cols=180 Identities=10% Similarity=0.044 Sum_probs=102.1
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---cccccce-----EEEEEeCCCCCHHHHHHHHH
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VINHFGK-----RIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~-----~~wv~vs~~~~~~~~~~~il 216 (674)
.-+++...+.... -...+.+.|+.|+||+++|..+....- ....-.| +-++......|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3456666665432 456788999999999999987744210 0000000 000101111111100
Q ss_pred HHhhCCCC-CcccHHHH---HHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhh-c
Q 039885 217 EALEGSAT-NLVELNAL---LLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGM-M 289 (674)
Q Consensus 217 ~~l~~~~~-~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~-~ 289 (674)
..... .....++. .+.+... ..+++=++|+|+++..+....+.+...+-....++.+|++|.+. .+... .
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 11223333 2222221 24667799999998888888888988887766777777666653 34422 3
Q ss_pred CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 290 ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 290 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+-...+.+.+++.+++.+.+.... +. . .+.+..++..++|.|..+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~~--~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV---TM--S----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc---CC--C----HHHHHHHHHHcCCCHHHHHHH
Confidence 335578999999999988776532 11 1 122556899999999755444
No 195
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.23 E-value=0.0014 Score=76.60 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=77.8
Q ss_pred CceeechhhHHHHHHHhcCCC---CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEG---SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|-+..++.+.+.+.... ..+.....++.++|+.|+|||.||+.+... .-......+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 458999999999999875321 111335668999999999999999888663 11111122223332211111
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEE
Q 039885 214 AIIEALEGSATNL---VELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVT 279 (674)
Q Consensus 214 ~il~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivT 279 (674)
.+ ..+.+..+.- .....+.+.+++ ...-+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 640 ~~-~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TV-SRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hh-ccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11 1121221111 111223333332 455699999998888888888877776552 34556777
Q ss_pred cCC
Q 039885 280 TRK 282 (674)
Q Consensus 280 tR~ 282 (674)
|-.
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 196
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.23 E-value=0.00022 Score=64.33 Aligned_cols=89 Identities=26% Similarity=0.199 Sum_probs=50.4
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEE
Q 039885 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFL 246 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 246 (674)
|.++|++|+|||+||+.++... . ....-+.++...+..++....--. ... .. .....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~-~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FE-FKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TTT-TC-EEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-ccc-cc-cccccccccc-----cceeE
Confidence 6799999999999999998732 1 123345777777777765432221 010 00 0000000001 17899
Q ss_pred EEEeCCCCCChhhHHHHHHhhc
Q 039885 247 LVLDDVWTEDYNKWESFRRCLI 268 (674)
Q Consensus 247 lVlDdv~~~~~~~~~~l~~~l~ 268 (674)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997766566666665554
No 197
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.21 E-value=0.0018 Score=67.03 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=66.1
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCC-CCHHHHHHHHHHHhhCC
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGK-RIWVCVSDP-FDEYRIAKAIIEALEGS 222 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~il~~l~~~ 222 (674)
...++++.+..-. ....+.|+|.+|+|||||++.+.+... .++-+. ++|+.+.+. .++.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 4456888887543 334579999999999999999877421 122244 467777654 46778888888877654
Q ss_pred CCCcccHH-----HHHHHHHHHc--CCCeEEEEEeCCC
Q 039885 223 ATNLVELN-----ALLLRINESI--AREKFLLVLDDVW 253 (674)
Q Consensus 223 ~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 253 (674)
..+..... .....+.+++ ++++.+||+|++.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 42222211 1122223333 5899999999993
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=97.20 E-value=0.016 Score=66.92 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=98.4
Q ss_pred cCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEe
Q 039885 172 MGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLD 250 (674)
Q Consensus 172 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 250 (674)
|.++||||+|+.++++.- .+.++ ..+-+++|+..... ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 788999999999998521 12221 34556777644444 333444433211110 01245799999
Q ss_pred CCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhhc-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHH
Q 039885 251 DVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGMM-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328 (674)
Q Consensus 251 dv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~ 328 (674)
+++..+......+...+-......++|+++.+. .+...+ +....+.+.+++.++....+...+...+...+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 999988888888888887655556666655543 333222 23568999999999998888776543322112 335
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 039885 329 GRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 329 ~~~I~~~c~GlPLai~~~~~ 348 (674)
...|++.|+|.+..+..+-.
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 66799999999965554443
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.19 E-value=0.00047 Score=65.69 Aligned_cols=132 Identities=22% Similarity=0.179 Sum_probs=64.2
Q ss_pred eechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC------C---CHHH
Q 039885 140 CGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP------F---DEYR 210 (674)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~------~---~~~~ 210 (674)
..+..+....++.|. ...++.+.|++|.|||.||-+..-+.-..+.|+.++++.-.-. | +..+
T Consensus 3 ~p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 345567777788777 2358999999999999999877655444578888777642211 0 1000
Q ss_pred ----HHHHHHHHhhCCCCCcccHHHHHHH------HHHHcCCC---eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE
Q 039885 211 ----IAKAIIEALEGSATNLVELNALLLR------INESIARE---KFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL 277 (674)
Q Consensus 211 ----~~~~il~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 277 (674)
.+.-+...+..-. .....+.+.+. --.+++|+ ..+||+|++.+....++..+ +...+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 1111222221110 11122222211 01234554 46999999987765555544 55557899999
Q ss_pred EEcCCh
Q 039885 278 VTTRKE 283 (674)
Q Consensus 278 vTtR~~ 283 (674)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 986533
No 200
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.019 Score=59.54 Aligned_cols=94 Identities=10% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHHhh-cCCCCeEeCCCCChHhhHHHHHHHhhcCCCC
Q 039885 242 REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVAGM-MESTDVISIKELSERECWSLFERIAFFNRPS 319 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 319 (674)
+++=++|+|+++..+...++.+...+-...+++.+|++|.+ ..+... .+-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45668899999998888999999988877777766665554 443322 2334689999999999998887641 1
Q ss_pred CChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 320 LECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 320 ~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
++ ...++..++|.|+.+..+.
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 1225778899998666544
No 201
>PRK06526 transposase; Provisional
Probab=97.16 E-value=0.00076 Score=67.17 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=52.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.|+|++|+|||+||..+..... ...+. +.|+ +..++...+...... .. ....+... .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~~-----~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHHA-----GR---LQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHhc-----Cc---HHHHHHHh--ccC
Confidence 4589999999999999999976422 12222 2232 334455544332211 11 12223222 234
Q ss_pred EEEEEeCCCCCChhhH--HHHHHhhcC-CCCCcEEEEEcCCh
Q 039885 245 FLLVLDDVWTEDYNKW--ESFRRCLIN-GQRGSKILVTTRKE 283 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~IivTtR~~ 283 (674)
-+||+||+.......+ +.+...+.. ..+++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 5899999965422222 223333322 12344 88888754
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.16 E-value=0.0019 Score=66.26 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=69.6
Q ss_pred echhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 141 GRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 141 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
+|........+++..-.. ....+-+.++|..|+|||.||.++++... ...+. +.++++ .+++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHh
Confidence 444445555555543221 12345799999999999999999998632 22333 345544 345566555543
Q ss_pred CCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHH--HHHhh-cCC-CCCcEEEEEcC
Q 039885 221 GSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWES--FRRCL-ING-QRGSKILVTTR 281 (674)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IivTtR 281 (674)
.. +..+ .+.. + .+--||||||+..+....|.. +...+ ... ..+-.+|+||-
T Consensus 205 ~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 DG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 21 1222 2222 2 245699999997766666753 44443 222 24456888885
No 203
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.0021 Score=64.57 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=54.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccc-cceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINH-FGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
...+.++|..|+|||+||.++++.. ... -..++++.. .+++..+...+ +.....+.. +.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~-~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNR-MK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHH-hc-
Confidence 4568999999999999999999853 222 234456653 23333332221 111122222 22
Q ss_pred CeEEEEEeCCCC-----CChhhHHH--HHHhhcCC-CCCcEEEEEcCC
Q 039885 243 EKFLLVLDDVWT-----EDYNKWES--FRRCLING-QRGSKILVTTRK 282 (674)
Q Consensus 243 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~IivTtR~ 282 (674)
+--||||||+.. +....|.. +...+... ..+..+||||-.
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22234443 44333321 234457888863
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=97.14 E-value=0.0024 Score=63.94 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=51.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.|+|++|+|||+||..+...... ..+ .+.++. ..++...+....... . +...+...+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~------~~~l~~~l~~a~~~~-----~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTT------AADLLLQLSTAQRQG-----R---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEe------HHHHHHHHHHHHHCC-----c---HHHHHHHHh-cCC
Confidence 45779999999999999999764221 222 222332 333443333222111 1 112222222 344
Q ss_pred EEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcCC
Q 039885 245 FLLVLDDVWTEDYNKWE--SFRRCLING-QRGSKILVTTRK 282 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 282 (674)
-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 59999999753222222 344433221 2344 7888864
No 205
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.003 Score=69.03 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=89.2
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
+.+-+|.++-+++|++++.-..-...-+.++++++|++|||||++|+.|+.. ....|- -++|+.-.|..+|-.-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhccc-
Confidence 4568999999999999885322111335689999999999999999999874 333442 2345544444332110
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC----------------hhhHHHHHHhhcCC-CCCcEEEE
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED----------------YNKWESFRRCLING-QRGSKILV 278 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~l~~~l~~~-~~gs~Iiv 278 (674)
..+--..-...+++.|+.. +..+-|+.||.|+... +++=..|...+.+- --=|+|+.
T Consensus 484 -----RRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 484 -----RRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred -----ceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 0000011123333333332 4567899999986421 11111111211111 12256654
Q ss_pred -EcCCh--hHH-hhcCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 279 -TTRKE--TVA-GMMESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 279 -TtR~~--~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
.|-|. .+. .......++++.+-..+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33221 111 111234578888888777766665554
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.13 E-value=0.0013 Score=62.80 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=63.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCC--cccHHHHHHHHHHHcCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATN--LVELNALLLRINESIAR 242 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 242 (674)
.++.|+|..|.||||+|....... ..+-..++.+. ..++.......+++.++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 478899999999999998776632 22222233331 2222222233445555432211 2234455555555 333
Q ss_pred CeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 243 EKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 243 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
+.-+||+|.+...+.++..++...+. ..|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 44599999996543333444444433 35788999998754
No 207
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00087 Score=73.41 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=93.6
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
+.+-+|.++.+++|+++|.-..-...-.-+++++||++|+|||+|++.++.. ....|-. ++++.--|..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~RkfvR---~sLGGvrDEAEIRG-- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFVR---ISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEEE---EecCccccHHHhcc--
Confidence 4567999999999999985221111234579999999999999999999983 5555533 34444333333210
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChh----hHHHHHHhhcCC-C------------CCcE-EE
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYN----KWESFRRCLING-Q------------RGSK-IL 277 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~-~------------~gs~-Ii 277 (674)
...+--..-...+.+.+++. +.++-+++||.++....+ --..+...|... + -=|. +.
T Consensus 395 ----HRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 395 ----HRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ----ccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 00000011122333333332 567889999999653211 111222222110 0 1133 44
Q ss_pred EEcCChh---HHhhcCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 278 VTTRKET---VAGMMESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 278 vTtR~~~---va~~~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
|||-|.- .+..+....++++.+-.++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 5555431 12233446789999999998887776664
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0026 Score=62.81 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=56.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
...+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... .....+.+ .+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~~----l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQL----LNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHHH----HHHhc-c
Confidence 34788999999999999999998532 2223444553 34455544443321 11122222 22333 3
Q ss_pred eEEEEEeCCCCCChhhHHH--HHHhhcCC-CCCcEEEEEcC
Q 039885 244 KFLLVLDDVWTEDYNKWES--FRRCLING-QRGSKILVTTR 281 (674)
Q Consensus 244 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IivTtR 281 (674)
.=+|||||+.......|.. +...+... ...-.+||||-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 4488999997665556664 33333221 12334777775
No 209
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.11 E-value=0.00057 Score=64.28 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=50.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
..-+.++|..|+|||.||..+.+.. +...+ .+.|+.+ .+++..+ ..... ....+.... .. . +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l----~~~~~-~~~~~~~~~---~l-~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDEL----KQSRS-DGSYEELLK---RL-K-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHH----HCCHC-CTTHCHHHH---HH-H-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccc----ccccc-ccchhhhcC---cc-c-c
Confidence 3569999999999999999998742 22233 3455543 3344443 32211 112222222 22 2 2
Q ss_pred eEEEEEeCCCCCChhhHHH--HHHhhcCC-CCCcEEEEEcCCh
Q 039885 244 KFLLVLDDVWTEDYNKWES--FRRCLING-QRGSKILVTTRKE 283 (674)
Q Consensus 244 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~~ 283 (674)
-=||||||+-......|.. +...+... .++ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3488899997655444433 22222211 233 578888643
No 210
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.021 Score=57.92 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=102.2
Q ss_pred CceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++=|-++.+++|.+...-+-.. .-+.++-|.++|++|.|||-||++|++. ....| +.|..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc-----
Confidence 45778899888888876433210 0235677889999999999999999994 33444 33332
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHc-CCCeEEEEEeCCCCC-----------Chh---hHHHHHHhhcCC--CC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESI-AREKFLLVLDDVWTE-----------DYN---KWESFRRCLING--QR 272 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~~ 272 (674)
.++.+..-++. ..+...+-+.- ......|.+|.++-. +.+ ..-++...+... ..
T Consensus 219 ---SElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 ---SELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 12222222211 12222222222 346789999988431 112 233344444432 23
Q ss_pred CcEEEEEcCChhHHhh-----cCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh----HHH
Q 039885 273 GSKILVTTRKETVAGM-----MESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP----LAV 343 (674)
Q Consensus 273 gs~IivTtR~~~va~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP----Lai 343 (674)
..|||..|-..++... -.-...+++..-+.+.-.++|.-++-. ......-+++. +++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCHHH----HHHhcCCCchHHHHHH
Confidence 4688887765543322 122457777744444556666665532 22223345555 666676665 233
Q ss_pred HHHHHHh
Q 039885 344 KTIGSLL 350 (674)
Q Consensus 344 ~~~~~~L 350 (674)
-+=|+++
T Consensus 365 ctEAGm~ 371 (406)
T COG1222 365 CTEAGMF 371 (406)
T ss_pred HHHHhHH
Confidence 3445554
No 211
>PRK07261 topology modulation protein; Provisional
Probab=97.10 E-value=0.0013 Score=61.49 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=24.3
Q ss_pred EEEEEecCCChHHHHHHHHhcCccc-ccccceEEE
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDV-INHFGKRIW 199 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~w 199 (674)
.|.|+|++|+||||||+.+.....+ .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4889999999999999998764222 123455555
No 212
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.07 E-value=0.00029 Score=70.43 Aligned_cols=112 Identities=17% Similarity=0.093 Sum_probs=55.3
Q ss_pred cCCCCceEEEecCCCcccc--cchhHhhccCCceeEEEecccccccccccccc--------------ccccccCCCCCcc
Q 039885 492 LNAKKLRSFLISSPYDVFS--SVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE--------------IPKEIEKLIHLRF 555 (674)
Q Consensus 492 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~--------------lp~~i~~L~~Lr~ 555 (674)
..+++|++|+++.|..... ..+-..+.++..|+.|.| .+|.+.. .-+.++.-..||.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L-------~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL-------NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh-------hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 4455666666666651101 112234555666666666 4444321 1123444556666
Q ss_pred eeecCCCCcccc-----ccccCCCcccEEEecccccc---ccccccccccCccCCeeeeeeeC
Q 039885 556 LQLRDLMIDELP-----ETCCELFNLQTLEIRQRGYY---LRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 556 L~L~~~~i~~lP-----~~i~~L~~L~~L~l~~~~~~---~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
+...+|++..-| ..+...+.|+.+.+..|+-. +.-+-..+..+++|+.|++..|-
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 666666654333 23455566666666665100 01123345566666666665544
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0045 Score=64.56 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=84.2
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc-------------------ccceEE
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN-------------------HFGKRI 198 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 198 (674)
+++|-+....++..+...... ....+.++|++|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 456777788888888874431 233599999999999999998876421000 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcE
Q 039885 199 WVCVSDPFD---EYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSK 275 (674)
Q Consensus 199 wv~vs~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 275 (674)
.+..+.... ..+..+++.+...... ..++.-++++|+++....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443333 1223333333222111 035677999999987776667777777766667788
Q ss_pred EEEEcCCh-hHHhhc-CCCCeEeCCC
Q 039885 276 ILVTTRKE-TVAGMM-ESTDVISIKE 299 (674)
Q Consensus 276 IivTtR~~-~va~~~-~~~~~~~l~~ 299 (674)
+|++|... .+...+ .....+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88888733 233222 2234666666
No 214
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.03 E-value=0.0046 Score=68.63 Aligned_cols=43 Identities=33% Similarity=0.515 Sum_probs=35.7
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999877543 234567999999999999999975
No 215
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.00 E-value=0.00086 Score=62.14 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=55.1
Q ss_pred EEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc--ccccCCCCC
Q 039885 476 HSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP--KEIEKLIHL 553 (674)
Q Consensus 476 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp--~~i~~L~~L 553 (674)
.+++.+|++..++ .+..++.|.+|.+.+|. +..+-|..-.-+++|.+|.| .+|++..+- ..+..++.|
T Consensus 46 ~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr--It~I~p~L~~~~p~l~~L~L-------tnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 46 AIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR--ITRIDPDLDTFLPNLKTLIL-------TNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred eecccccchhhcc-cCCCccccceEEecCCc--ceeeccchhhhccccceEEe-------cCcchhhhhhcchhccCCcc
Confidence 3445555544332 44556666666666666 55544444444556666666 666655532 234455666
Q ss_pred cceeecCCCCccccc----cccCCCcccEEEecc
Q 039885 554 RFLQLRDLMIDELPE----TCCELFNLQTLEIRQ 583 (674)
Q Consensus 554 r~L~L~~~~i~~lP~----~i~~L~~L~~L~l~~ 583 (674)
+||.+-+|.++..+. -++++++|++||..+
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666666666654443 255666666666554
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.00 E-value=0.0032 Score=73.89 Aligned_cols=136 Identities=14% Similarity=0.230 Sum_probs=77.2
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|-+..++.|...+..... .+.....++.++|+.|+|||+||+.+.+.. -..-...+-++.+.-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccHHH
Confidence 4589999999999888752211 112345567899999999999999887631 00012233344443222111111
Q ss_pred HHHHHhhCCC--CCcccHHHHHHHHHHHcCCCe-EEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEEE
Q 039885 214 AIIEALEGSA--TNLVELNALLLRINESIAREK-FLLVLDDVWTEDYNKWESFRRCLING-----------QRGSKILVT 279 (674)
Q Consensus 214 ~il~~l~~~~--~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IivT 279 (674)
-++... ..-.....+ .+.++.++ -+++||++....++.++.+...+..+ -..+-||+|
T Consensus 587 ----l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 ----LIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ----hcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 112111 011111223 33343344 58999999988888888888877654 134456667
Q ss_pred cCC
Q 039885 280 TRK 282 (674)
Q Consensus 280 tR~ 282 (674)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.00 E-value=0.00053 Score=70.61 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=42.2
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+++|.++.++++++++.....+....-+++.++|++|+||||||+.+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999987543221334688999999999999999999874
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.99 E-value=0.029 Score=61.69 Aligned_cols=205 Identities=16% Similarity=0.117 Sum_probs=116.5
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc------cccccceEEEEEeCCCCCHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND------VINHFGKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~~ 211 (674)
.+=+|+.|..+|.+.+..--+. +...+.+.|.|-+|.|||..+..|.+... -...|+. +.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 3668999999999988644331 23455899999999999999999987321 1234433 44555555678999
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHcC-----CCeEEEEEeCCCCCChhhHHHHHHhhcC-CCCCcEEEEEcCCh--
Q 039885 212 AKAIIEALEGSATNLVELNALLLRINESIA-----REKFLLVLDDVWTEDYNKWESFRRCLIN-GQRGSKILVTTRKE-- 283 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~-- 283 (674)
+..|..++.+.... .....+.|..++. .+.+++++|+++.--...-+.+...|.+ ..++||++|-+-..
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 99999999876432 2233344444443 3568888898743211123445566665 45788876654211
Q ss_pred h-HHhhcC-------CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 284 T-VAGMME-------STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 284 ~-va~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
+ ....+. ...-+...|-+.++-.++...+..+... ......+-++++|+.-.|-.-.|+.+.-+
T Consensus 552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 0 111111 0124555566666666666554433211 11223333445555555444444444433
No 219
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.97 E-value=0.0051 Score=58.21 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=36.2
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.++||-++.++++.-+-. +++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 479999999988877665 33667899999999999998877765
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.022 Score=60.41 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=85.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
..+..+.+.|++|+|||+||..++.+ ..|+.+=-++. +++. +-+ +......+.......-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e~mi-------G~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------EDMI-------GLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------HHcc-------Ccc--HHHHHHHHHHHHHHhhc
Confidence 35677889999999999999999864 56776433321 1100 000 01111122223333445
Q ss_pred CCeEEEEEeCCCCCChhhH------------HHHHHhhcCC-CCCcE--EEEEcCChhHHhhcCC----CCeEeCCCCCh
Q 039885 242 REKFLLVLDDVWTEDYNKW------------ESFRRCLING-QRGSK--ILVTTRKETVAGMMES----TDVISIKELSE 302 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~------------~~l~~~l~~~-~~gs~--IivTtR~~~va~~~~~----~~~~~l~~L~~ 302 (674)
+.--.||+||+.. .-+| ..+.-.+... .+|-| |+-||....+...|+- ...++++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 5667999999833 1122 2233333332 24444 4457777788887754 34788999977
Q ss_pred -HhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHc
Q 039885 303 -RECWSLFERIAFFNRPSLECEQLEEFGRKIVSKC 336 (674)
Q Consensus 303 -~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c 336 (674)
++..+.++..-. ..+...+.++.+.+.+|
T Consensus 675 ~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 777777766431 12344566666677666
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.0092 Score=69.41 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=92.8
Q ss_pred cCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
-+++.|.+..+++|.+++...-.. .-...+.+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH-----
Confidence 345889999999998876421100 01234568899999999999999998842 2222 222211
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCC-CCCcEE
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-----------YNKWESFRRCLING-QRGSKI 276 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~I 276 (674)
++. .... ......+...+.........+|+||++.... ......+...+... ..+..+
T Consensus 247 -~i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 0000 0111222333333344567899999984311 11223344433321 233344
Q ss_pred EE-EcCChh-HHhhc----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH
Q 039885 277 LV-TTRKET-VAGMM----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL 341 (674)
Q Consensus 277 iv-TtR~~~-va~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 341 (674)
+| ||.... +...+ .-...+.+...+.++-.+++....-. ........ ...+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d~~----l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAEDVD----LDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCccccC----HHHHHHhCCCCCH
Confidence 44 444322 11111 11346778888888888888754321 11111112 3457777877653
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.0024 Score=65.98 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=54.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.++|..|+|||.||..+++... ...+ .++++++. +++..+...-... ..+.... +.. +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g~-~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~---~~~-l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRGK-SVIYRTAD------ELIEILREIRFNN---DKELEEV---YDL-LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCCC-eEEEEEHH------HHHHHHHHHHhcc---chhHHHH---HHH-hc-cC
Confidence 5699999999999999999988532 2222 44555433 3444333221111 1111111 222 22 22
Q ss_pred EEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcCC
Q 039885 245 FLLVLDDVWTEDYNKWE--SFRRCLING-QRGSKILVTTRK 282 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 282 (674)
=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999665433342 344433321 234568888863
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.88 E-value=0.013 Score=55.44 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=66.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE---eCCCCCHHHHHH------HHHHHhhCCC------CCccc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC---VSDPFDEYRIAK------AIIEALEGSA------TNLVE 228 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~il~~l~~~~------~~~~~ 228 (674)
-.+++|+|..|.|||||++.++... ......+++. +. ..+...... ++++.++... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999998742 2233444432 21 122222211 1344443221 11222
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CC-CcEEEEEcCChhHH
Q 039885 229 LNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QR-GSKILVTTRKETVA 286 (674)
Q Consensus 229 ~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~IivTtR~~~va 286 (674)
-+...-.+.+.+...+-++++|+.-. -+......+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33334446667777888999998643 2334445555555432 22 66788888776544
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.84 E-value=0.0039 Score=60.54 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
.-.++.|+|++|+|||++|..+... ....-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 5689999999999999999887653 223345788998875 66655544
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.83 E-value=0.0054 Score=60.26 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=34.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 211 (674)
.-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 56799999999999999998887642 2234567898877 5665544
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.019 Score=59.47 Aligned_cols=71 Identities=8% Similarity=0.074 Sum_probs=48.6
Q ss_pred CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HHhhc-CCCCeEeCCCCChHhhHHHHHHH
Q 039885 242 REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VAGMM-ESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
+++=++|+|++...+......+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444566799988777777777777765545566777776643 33322 22458889999999998888653
No 227
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0058 Score=70.16 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=69.8
Q ss_pred ceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
.++|-++.++.|...+..... ........+.++|++|+|||++|+.+.... . ...+.++++.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----c
Confidence 479999999988888763210 012345678999999999999999997742 1 123344444322111 1
Q ss_pred HHHHhhCCCCCc---ccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC
Q 039885 215 IIEALEGSATNL---VELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING 270 (674)
Q Consensus 215 il~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 270 (674)
+ ..+.+..+.- .....+.+.++ +....+|+||++.....+.+..+...+..+
T Consensus 530 ~-~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 V-SRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred H-HHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1 2222221111 11112222222 233469999999888777888887777543
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.82 E-value=0.011 Score=55.62 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=61.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh--CC-------------CCCccc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALE--GS-------------ATNLVE 228 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~--~~-------------~~~~~~ 228 (674)
-.+++|+|..|.|||||++.+...... -...+++.-. +.......+-+.++ .+ ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 357999999999999999999764221 1222222110 11110000001110 00 111122
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 229 LNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 229 ~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
.+...-.+.+.+-.++-++++|+... -+....+.+...+....++..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 23333445666777788999998754 233344444444433234677888888776554
No 229
>PHA02244 ATPase-like protein
Probab=96.81 E-value=0.012 Score=60.92 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=28.7
Q ss_pred ceeechh----hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 138 DVCGRVE----EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 138 ~~vGr~~----~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++|... ....+..++.... -|.|+|++|+|||+||+.++..
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHH
Confidence 4666543 3345555554322 3778999999999999999874
No 230
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.80 E-value=0.0099 Score=58.84 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=38.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCCCCHHHHHHHHHHHh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINH----FGKRIWVCVSDPFDEYRIAKAIIEAL 219 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l 219 (674)
.-.++.|+|.+|+|||+||..++........ -..++|++....++..++. ++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 5678999999999999999988643222221 3578899988877765543 344443
No 231
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.79 E-value=0.015 Score=56.17 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCC-CCChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhhcC
Q 039885 227 VELNALLLRINESIAREKFLLVLDDVW-TEDYNKWESFRRCLING--QRGSKILVTTRKETVAGMME 290 (674)
Q Consensus 227 ~~~~~~~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~~~ 290 (674)
+.-++-.-.+.+.|...+-+|+-|+-- +-|.+.-+.+...+... ..|..||+.|.+..+|..+.
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 334455566788888888999999631 12233344444444432 35788999999999998653
No 232
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.78 E-value=0.016 Score=58.14 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=94.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC-cccccccceEEEEEeCCCCCH-HHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND-NDVINHFGKRIWVCVSDPFDE-YRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~~~~~ 214 (674)
..++|-.++..++-.++....- .+...-+.|+|+.|.|||+|...+..+ .+..++| .-|........ +-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 3589999999888888754321 223445889999999999999877765 2233333 33444444333 224455
Q ss_pred HHHHhhC----CCCCcccHHHHHHHHHHHcC------CCeEEEEEeCCCCCChhh-HHHHHHhhc----CCCCCcEEEEE
Q 039885 215 IIEALEG----SATNLVELNALLLRINESIA------REKFLLVLDDVWTEDYNK-WESFRRCLI----NGQRGSKILVT 279 (674)
Q Consensus 215 il~~l~~----~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~-~~~l~~~l~----~~~~gs~IivT 279 (674)
|.+++.. ......+..+....+-..|+ +-++++|+|.++..-... -.-+...|. ...+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 5555533 22222223333334444442 245788888876532211 111222221 12345566689
Q ss_pred cCChhH-------HhhcCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 280 TRKETV-------AGMMESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 280 tR~~~v-------a~~~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
||-... -....-..++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 985432 2222222255567777788877777755
No 233
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.77 E-value=0.001 Score=58.25 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0048 Score=61.52 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=48.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
.-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..++..++....... ....++.+.+. +-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l~-~~ 168 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG--------RLEEKLLRELK-KV 168 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHhh-cC
Confidence 4589999999999999999998643 3233 334443 445666665555431 11222222221 23
Q ss_pred EEEEEeCCCCCChhhHH
Q 039885 245 FLLVLDDVWTEDYNKWE 261 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~ 261 (674)
=||||||+-......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 49999999665444444
No 235
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.77 E-value=0.0055 Score=57.64 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEE
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWV 200 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 200 (674)
...+|.++|+.|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4568999999999999999999874 33445555554
No 236
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00011 Score=71.79 Aligned_cols=154 Identities=19% Similarity=0.093 Sum_probs=78.1
Q ss_pred CCceeEEEEEcCCcC-CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-----cc
Q 039885 471 KEKLRHSMLMLGFEA-SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-----IP 544 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-----lp 544 (674)
+.++..+++.++.+. .+...+.+-.+|+.|+++.++........-.+.+++.|..|+| ++|.+.. +-
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl-------sWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL-------SWCFLFTEKVTVAV 281 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc-------hHhhccchhhhHHH
Confidence 344555555555543 2334455566666666666542122223334566666666666 5544322 11
Q ss_pred ccccCCCCCcceeecCCC----CccccccccCCCcccEEEeccccccccc-cccccccCccCCeeeeeeeCccCCCCCCC
Q 039885 545 KEIEKLIHLRFLQLRDLM----IDELPETCCELFNLQTLEIRQRGYYLRR-LPHGFGRLVNLRHLSEFVVGITGSRNDSR 619 (674)
Q Consensus 545 ~~i~~L~~Lr~L~L~~~~----i~~lP~~i~~L~~L~~L~l~~~~~~~~~-lP~~i~~L~~L~~L~l~~~~~~~~~~~~~ 619 (674)
..|+ ..|..|+|+++. ...+..-..+.++|..|||++| ..+.. +-..|.+++.|+||.+..+- . .
T Consensus 282 ~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~-v~l~~~~~~~~~kf~~L~~lSlsRCY--~----i- 351 (419)
T KOG2120|consen 282 AHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS-VMLKNDCFQEFFKFNYLQHLSLSRCY--D----I- 351 (419)
T ss_pred hhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc-cccCchHHHHHHhcchheeeehhhhc--C----C-
Confidence 2222 245566666654 1233323456667777777776 32221 22235666677777774443 2 2
Q ss_pred CCCCChhhccCcccCCCeeEEecc
Q 039885 620 SRGCKLEVLGQLRHLRGSLRIRGL 643 (674)
Q Consensus 620 ~~~~~~~~L~~L~~L~g~L~i~~l 643 (674)
.+..+-++...+.|. .|++.+.
T Consensus 352 -~p~~~~~l~s~psl~-yLdv~g~ 373 (419)
T KOG2120|consen 352 -IPETLLELNSKPSLV-YLDVFGC 373 (419)
T ss_pred -ChHHeeeeccCcceE-EEEeccc
Confidence 444455555555555 5666553
No 237
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.74 E-value=0.015 Score=52.71 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=59.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
-.+++|+|..|.|||||++.+..... .....+|+.-.. .+.- ..+.+..+...-.+.+.+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999987422 223334332100 0000 000222223334456666677
Q ss_pred eEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 244 KFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 244 r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
.-++++|+.-. -+......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 78999998643 3444555555555433 246777777665443
No 238
>PRK13695 putative NTPase; Provisional
Probab=96.72 E-value=0.0024 Score=59.95 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 239
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.033 Score=64.81 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=94.1
Q ss_pred CceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.+..+++|.+.+...-.. .-...+-+.++|++|+|||+||+++++.. ...| +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 45788888888887765421100 01234558899999999999999999852 2222 22221 1
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC--------Ch----hhHHHHHHhhcC--CCCCcE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE--------DY----NKWESFRRCLIN--GQRGSK 275 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~ 275 (674)
+ ++....+. ....+.......-+....+|+||+++.. +. .....+...+.. ...+.-
T Consensus 522 ~----l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----HhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 11111111 1112222223333456789999998431 00 112233333432 123445
Q ss_pred EEEEcCChhHHhh--c---CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 276 ILVTTRKETVAGM--M---ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 276 IivTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
||.||........ . .-...+.+...+.++-.++|..+.-. .......++.. +++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~l~~----la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVDLEE----LAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCCHHH----HHHHcCCCC
Confidence 6666654432211 1 22457888888888888888765432 21112223333 777777654
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.71 E-value=0.0018 Score=58.22 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=62.6
Q ss_pred eechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc-ccccceEEEEEeCCCCCHHHHHHHHHHH
Q 039885 140 CGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV-INHFGKRIWVCVSDPFDEYRIAKAIIEA 218 (674)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~il~~ 218 (674)
||....++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|... .+.. ..
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----------
Confidence 5666677777776653221 2234789999999999999988875322 1222211 0111 00
Q ss_pred hhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCcEEEEEcCCh
Q 039885 219 LEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING-QRGSKILVTTRKE 283 (674)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IivTtR~~ 283 (674)
.+.+.. . +.--|+|+|+..-+.+....+...+... ....|+|.||...
T Consensus 62 --------------~~~l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 1 3345779999887777777787777643 5678999998743
No 241
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0064 Score=68.63 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=85.5
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc---cccccc-ceEEEEEeCCCCCHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN---DVINHF-GKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~ 213 (674)
.++||++|++++++.|..... +- -.++|.+|+|||++|.-++... .|-... +..++. .
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----------- 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----------- 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e-----------
Confidence 489999999999999986543 12 2368999999999886665421 110100 111110 0
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHc-CCCeEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 214 AIIEALEGSATNLVELNALLLRINESI-AREKFLLVLDDVWTE---------DYNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
+|.. +.....-..+.++....+-+.+ +.++..+++|.+++. ..+.-+-++..|..+ .-..|=.||-++
T Consensus 233 D~g~-LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~E 310 (786)
T COG0542 233 DLGS-LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDE 310 (786)
T ss_pred cHHH-HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHH
Confidence 0111 1111122334444444444444 345899999998651 122333455555443 223444555443
Q ss_pred hHHhhc-------CCCCeEeCCCCChHhhHHHHHHH
Q 039885 284 TVAGMM-------ESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 284 ~va~~~-------~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
. ...+ .....+.+..-+.+++..++...
T Consensus 311 Y-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 311 Y-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred H-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 2 2222 22458889999999999888654
No 242
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.69 E-value=0.021 Score=53.09 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=63.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccc-cc--cc---eEEEEEeCCCCC--HHHHHHHHHHHhhCCCCCcccHHHHHHH
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVI-NH--FG---KRIWVCVSDPFD--EYRIAKAIIEALEGSATNLVELNALLLR 235 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~---~~~wv~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~ 235 (674)
-.+++|+|..|.|||||++.+....... +. ++ .+.+ +.+... ...+...+.-. .....+.-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 4579999999999999999998742211 11 11 1222 222221 11222222210 12223333444445
Q ss_pred HHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 236 INESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 236 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
+.+.+..++-++++|+--. -|......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 6666777778899998643 2334444454444432 356777877766543
No 243
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.66 E-value=0.011 Score=58.04 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=52.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccccc------ceEEEEEeCCCCCHHHHHHHHHHHhhCCC---------CCcc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHF------GKRIWVCVSDPFDEYRIAKAIIEALEGSA---------TNLV 227 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~ 227 (674)
.-.++.|+|.+|+|||+||..++.... ..- ..++|++....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 567899999999999999988865321 122 457899888777765544 3333322110 0112
Q ss_pred cHHHHHHHHHHHcC----CCeEEEEEeCCC
Q 039885 228 ELNALLLRINESIA----REKFLLVLDDVW 253 (674)
Q Consensus 228 ~~~~~~~~l~~~l~----~kr~LlVlDdv~ 253 (674)
+.+++...+..... .+--|+|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33444444444332 344588888873
No 244
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.14 Score=49.18 Aligned_cols=108 Identities=23% Similarity=0.319 Sum_probs=65.6
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
-..++|.+..++.+++--..=.. ....--|.+||.-|.|||+|++++.+. +....-. -|.|..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k----------- 121 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDK----------- 121 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcH-----------
Confidence 34689999888888774321110 123445889999999999999999884 2232222 222222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCC
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLING 270 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~ 270 (674)
.+..++..+.+.|+ ...+||.|..||+.-+ +...+..++..+..+
T Consensus 122 --------~dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 122 --------EDLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred --------HHHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 01112222222222 2468999999998543 345788898888754
No 245
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.014 Score=54.52 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=61.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHhh--CCCCC----------cccH
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD--PFDEYRIAKAIIEALE--GSATN----------LVEL 229 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~--~~~~~----------~~~~ 229 (674)
-.+++|+|..|.|||||.+.++.-.. .....+++.-.. ........ ..++ .+... .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhCHH
Confidence 45899999999999999999987422 223333321100 00111110 0010 00000 1112
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 230 NALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 230 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
+...-.+.+.+..+.-+++||+-.. -|......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 2223335566667778999998643 2333444454444433335678888887765543
No 246
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.023 Score=59.31 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD--EYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
..++|+++|++|+||||++..++.... ...+ .+..++.. .+. ..+-++...+.++.......+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999998876321 1222 23344432 332 223333333333333222234445554444432
Q ss_pred CC-CeEEEEEeCCCCC--ChhhHHHHHHhhcC
Q 039885 241 AR-EKFLLVLDDVWTE--DYNKWESFRRCLIN 269 (674)
Q Consensus 241 ~~-kr~LlVlDdv~~~--~~~~~~~l~~~l~~ 269 (674)
.. +.=+|++|-.-.. +.....++...+..
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 21 2347778866332 22345555555543
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.63 E-value=0.0047 Score=61.52 Aligned_cols=88 Identities=22% Similarity=0.247 Sum_probs=54.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccccc-ceEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHH---
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHF-GKRIWVCVSDPF-DEYRIAKAIIEALEGS-------ATNLVELN--- 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 230 (674)
.-.-++|+|..|+||||||+.+++. ++.+| +.++++.+.+.. ...++..++.+.-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999985 44455 455666676654 3345555554431111 11111111
Q ss_pred --HHHHHHHHHc--C-CCeEEEEEeCC
Q 039885 231 --ALLLRINESI--A-REKFLLVLDDV 252 (674)
Q Consensus 231 --~~~~~l~~~l--~-~kr~LlVlDdv 252 (674)
...-.+.+++ + ++..|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 3 89999999999
No 248
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.62 E-value=0.0068 Score=61.41 Aligned_cols=131 Identities=23% Similarity=0.201 Sum_probs=71.4
Q ss_pred echhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc-CcccccccceEE----EEEeCCCC---------
Q 039885 141 GRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN-DNDVINHFGKRI----WVCVSDPF--------- 206 (674)
Q Consensus 141 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~-~~~~~~~F~~~~----wv~vs~~~--------- 206 (674)
+|..+..--+++|+ ++.+..|.+.|.+|.|||.||-+..= ....++.|..++ -+.+.++.
T Consensus 228 prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 46666667777787 44788999999999999998855422 112234444322 12233321
Q ss_pred CHHHHHHHHHH---HhhCCCCCcccHHHHHHHHH---------HHcCCC---eEEEEEeCCCCCChhhHHHHHHhhcCCC
Q 039885 207 DEYRIAKAIIE---ALEGSATNLVELNALLLRIN---------ESIARE---KFLLVLDDVWTEDYNKWESFRRCLINGQ 271 (674)
Q Consensus 207 ~~~~~~~~il~---~l~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~ 271 (674)
.+.-.++.|.. .+..... ...+.+...+. .+.+|+ .-+||+|...+-.+ .+++..+...+
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 11112222322 2222110 11111211111 233444 35999999987654 44556666778
Q ss_pred CCcEEEEEcCC
Q 039885 272 RGSKILVTTRK 282 (674)
Q Consensus 272 ~gs~IivTtR~ 282 (674)
.||||+.|--.
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 99999998753
No 249
>PHA00729 NTP-binding motif containing protein
Probab=96.62 E-value=0.0047 Score=59.64 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999874
No 250
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.62 E-value=0.0076 Score=60.26 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=39.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.+.=|+|.+|+|||.|+..++-...+.. .=..++|++....|..+++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 345788999999999999977754322221 12358899999999988775 4666543
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.0098 Score=54.76 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=28.1
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF 206 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 206 (674)
++.|+|.+|+||||+++.+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36899999999999999987742 2223456677766543
No 252
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.60 E-value=0.0057 Score=56.82 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=65.4
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEA 218 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 218 (674)
+||.+..+.++++.+..-.. .. .-|.|+|..|+||+.+|+.+++.... .-..-+-|+++. ++.+.+-.++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhh-hhcchhhhhhhcc
Confidence 46777788888877654332 12 34669999999999999999984221 111222334442 2333332222211
Q ss_pred hhCCCCC--cccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC------C-----CCcEEEEEcCCh
Q 039885 219 LEGSATN--LVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING------Q-----RGSKILVTTRKE 283 (674)
Q Consensus 219 l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~IivTtR~~ 283 (674)
..+.... ..... .+... ..=-|+||++..........+...+..+ + ...|||.||...
T Consensus 74 ~~~~~~~~~~~~~G----~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKG----LLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEH----HHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCC----ceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1110000 01111 12221 1225789999877666666666665432 1 246888888743
No 253
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.031 Score=52.85 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=72.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe-------------------CCCCC----------------
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV-------------------SDPFD---------------- 207 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~---------------- 207 (674)
.-.|++|+|+.|+|||||.+.+..=+. .=...+||.- -+.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 346899999999999999998865322 2234445432 12221
Q ss_pred ---------HHHHHHHHHHHhhCCC------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC-C
Q 039885 208 ---------EYRIAKAIIEALEGSA------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN-G 270 (674)
Q Consensus 208 ---------~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~ 270 (674)
+++...++++.++... .+.+..++-.-.|.+.|.-++-++.+|..-+ -|++...++...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 1223333333333221 1223344445568888888888999999855 245555555555443 3
Q ss_pred CCCcEEEEEcCChhHHhhc
Q 039885 271 QRGSKILVTTRKETVAGMM 289 (674)
Q Consensus 271 ~~gs~IivTtR~~~va~~~ 289 (674)
..|-.+|+.|....-|..+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 4676677777766666553
No 254
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.019 Score=53.83 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=58.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE------eCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC------VSDPFDEYRIAKAIIEALEGSATNLVELNALLLRI 236 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l 236 (674)
.-.+++|+|+.|+|||||++.+..-.. .....+++. +.+... .+.-+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 345899999999999999999976322 222222221 111111 22223333445
Q ss_pred HHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CC-CcEEEEEcCChhHHh
Q 039885 237 NESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QR-GSKILVTTRKETVAG 287 (674)
Q Consensus 237 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~IivTtR~~~va~ 287 (674)
.+.+..+.-++++|+--. -+......+...+... .. +..||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666667788999998643 2333444444444321 12 256777777665444
No 255
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.57 E-value=0.00081 Score=39.06 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=9.4
Q ss_pred CcceeecCCCCcccccccc
Q 039885 553 LRFLQLRDLMIDELPETCC 571 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~i~ 571 (674)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555554443
No 256
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.57 E-value=0.012 Score=54.62 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD--PFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
-.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+..+ +.++- ..+.+..+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 3579999999999999999998742 2334445443211 111111111 01110 0112233333444666677
Q ss_pred CCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHH
Q 039885 242 REKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVA 286 (674)
Q Consensus 242 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va 286 (674)
.+.-++++|+.-. -|......+...+... ..|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 7788999998643 2344455555555432 3466788888876543
No 257
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.57 E-value=0.013 Score=64.56 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=61.1
Q ss_pred CCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 161 QNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 161 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
.+.-+++.+.|++|+||||||+-|+.. ..| .++=|++|+.-++..+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 456789999999999999999988874 223 3456788887777777666666554332 22
Q ss_pred --CCCeEEEEEeCCCCCChhhHHHHHHhhc
Q 039885 241 --AREKFLLVLDDVWTEDYNKWESFRRCLI 268 (674)
Q Consensus 241 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 268 (674)
.++..-+|+|.++.......+.+...+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2577789999997765444555555444
No 258
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.55 E-value=0.022 Score=52.57 Aligned_cols=125 Identities=22% Similarity=0.292 Sum_probs=74.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE---------------------eCCCC---------------
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC---------------------VSDPF--------------- 206 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---------------------vs~~~--------------- 206 (674)
.-..+.++|+.|.|||||.+.+|...+.. ...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34578999999999999999999864422 2344442 11111
Q ss_pred ------CHHHHHHHHHHHh---hCC------CCCcccHHHHHHHHHHHcCCCeEEEEEeCCC-CCCh-hhHHHHHHhhcC
Q 039885 207 ------DEYRIAKAIIEAL---EGS------ATNLVELNALLLRINESIAREKFLLVLDDVW-TEDY-NKWESFRRCLIN 269 (674)
Q Consensus 207 ------~~~~~~~~il~~l---~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~-~~~~-~~~~~l~~~l~~ 269 (674)
...++-+...+.+ +.. +.+.+.-++-.-.|.+.+-++.-+++=|.-- +-|+ -.|+-+.-+-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1223333333322 211 1223444555566778888889999999531 1122 345544333333
Q ss_pred CCCCcEEEEEcCChhHHhhcC
Q 039885 270 GQRGSKILVTTRKETVAGMME 290 (674)
Q Consensus 270 ~~~gs~IivTtR~~~va~~~~ 290 (674)
+..|+.||++|.+..+-..+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 567999999999998776653
No 259
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.55 E-value=0.0029 Score=58.71 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC-CCCcceeecCCCCccccc--ccc
Q 039885 495 KKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL-IHLRFLQLRDLMIDELPE--TCC 571 (674)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L-~~Lr~L~L~~~~i~~lP~--~i~ 571 (674)
.....+++..|. +.. ++ .|..++.|..|.| ++|.|+.+-+.++.+ ++|..|.|.+|.|..|-+ .+.
T Consensus 42 d~~d~iDLtdNd--l~~-l~-~lp~l~rL~tLll-------~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDND--LRK-LD-NLPHLPRLHTLLL-------NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred cccceecccccc--hhh-cc-cCCCccccceEEe-------cCCcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence 345667777776 433 22 3778889999999 999999877777654 569999999998876643 356
Q ss_pred CCCcccEEEecccccccccccc----ccccCccCCeeee
Q 039885 572 ELFNLQTLEIRQRGYYLRRLPH----GFGRLVNLRHLSE 606 (674)
Q Consensus 572 ~L~~L~~L~l~~~~~~~~~lP~----~i~~L~~L~~L~l 606 (674)
.++.|++|.+-+| .+...+. .+.++++|+.||.
T Consensus 111 ~~p~L~~Ltll~N--pv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 111 SCPKLEYLTLLGN--PVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred cCCccceeeecCC--chhcccCceeEEEEecCcceEeeh
Confidence 7788999998888 4555543 3788999999998
No 260
>PRK06696 uridine kinase; Validated
Probab=96.54 E-value=0.0026 Score=62.41 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=35.3
Q ss_pred echhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 141 GRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 141 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|..-+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36677788888886533 236789999999999999999999873
No 261
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.53 E-value=0.0087 Score=54.62 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=61.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEE--EEEeCCCCCHHHHHHHHHHHh-----hCC-----CCCcc---cH
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRI--WVCVSDPFDEYRIAKAIIEAL-----EGS-----ATNLV---EL 229 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~il~~l-----~~~-----~~~~~---~~ 229 (674)
..|-|++..|.||||+|-...-.. ....+...+ |+.-........+++.+ ..+ +.. ..... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888889999999997665421 122222222 22222223333433333 000 000 00001 11
Q ss_pred HHHHHHHHHHcCCC-eEEEEEeCCCCC---ChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 230 NALLLRINESIARE-KFLLVLDDVWTE---DYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 230 ~~~~~~l~~~l~~k-r~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
....+..++.+... -=|+|||++-.. ..-..+++...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22333344555444 459999998321 22345667777777777789999999754
No 262
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.02 Score=56.22 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=67.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcc-----cc------ccc---ceEEEEEeCCCC------CHH---------------
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDND-----VI------NHF---GKRIWVCVSDPF------DEY--------------- 209 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~-----~~------~~F---~~~~wv~vs~~~------~~~--------------- 209 (674)
..++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.-...+ ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999976211 10 001 234455321111 111
Q ss_pred -------HHHHHHHHHhhCCC------CCcccHHHHHHHHHHHcCCCeEEEEEeCC----CCCChhhHHHHHHhhcCCCC
Q 039885 210 -------RIAKAIIEALEGSA------TNLVELNALLLRINESIAREKFLLVLDDV----WTEDYNKWESFRRCLINGQR 272 (674)
Q Consensus 210 -------~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~l~~~l~~~~~ 272 (674)
+...+.++.++... .+.+.-+.-.-.|.+.|..+.=|+|||.- +.......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 33334444443321 11222333344577889999999999964 222223344444444443
Q ss_pred CcEEEEEcCChhHH
Q 039885 273 GSKILVTTRKETVA 286 (674)
Q Consensus 273 gs~IivTtR~~~va 286 (674)
|..||++|.+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 88899999876543
No 263
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.069 Score=58.81 Aligned_cols=95 Identities=21% Similarity=0.117 Sum_probs=55.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF--DEYRIAKA 214 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~ 214 (674)
.+|+--...+++..+...... -....|.|.|+.|+|||+||+++++... +.+.-.+..|+++.-. ..+.+++.
T Consensus 408 ~d~i~~~s~kke~~n~~~spv----~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~ 482 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV----FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF 482 (952)
T ss_pred Cceeecchhhhhhhhhhcccc----cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH
Confidence 345544444444444333322 2446789999999999999999998644 4444445566665421 12222222
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCC
Q 039885 215 IIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVW 253 (674)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 253 (674)
+ ...+.+.+....-+|||||++
T Consensus 483 l-----------------~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 483 L-----------------NNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred H-----------------HHHHHHHHhhCCcEEEEcchh
Confidence 2 122334556788899999984
No 264
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.52 E-value=0.014 Score=54.58 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=63.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCc---ccccc---cc--eEEEEEeCCCCCHHHHHHHHHHHhhCCCC-------Ccc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDN---DVINH---FG--KRIWVCVSDPFDEYRIAKAIIEALEGSAT-------NLV 227 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~---F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~-------~~~ 227 (674)
.-.+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.++.++.... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321 11111 11 12232 22 345555553211 112
Q ss_pred cHHHHHHHHHHHcCCC--eEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 228 ELNALLLRINESIARE--KFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 228 ~~~~~~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
.-+...-.+.+.+..+ .-++++|+.-. -+......+...+... ..|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223333455566556 77888998633 2334444454444331 24677888888876654
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.52 E-value=0.013 Score=57.20 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=30.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD 207 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 207 (674)
.-.++.|.|.+|+||||+|.+++... ...=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 56789999999999999998887632 12223567787655543
No 266
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.49 E-value=0.004 Score=58.05 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=52.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
...++.+.|+.|+|||.||+.+.....+ +.....+-++.+.-....+.-. ++..+.......... .
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~-~~~~l~~~~~~~v~~-------~----- 67 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVES-SVSKLLGSPPGYVGA-------E----- 67 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSC-HCHHHHHHTTCHHHH-------H-----
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHh-hhhhhhhcccceeec-------c-----
Confidence 3568899999999999999999873211 3334555566554333111111 111111111110000 0
Q ss_pred CeEEEEEeCCCCCCh-----------hhHHHHHHhhcC
Q 039885 243 EKFLLVLDDVWTEDY-----------NKWESFRRCLIN 269 (674)
Q Consensus 243 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 269 (674)
..-+|+||++..... ..|..|...+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 011999999998887 778888877754
No 267
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.49 E-value=0.026 Score=61.58 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=89.5
Q ss_pred CceeechhhHHHHHHHhcC---C-CCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLG---E-GSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 212 (674)
.++.|.+..++.+.+.... . ....-...+-|.++|++|.|||.+|+.+.+... -.| +-+..+. +.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------hc
Confidence 3577877666655542210 0 000012456789999999999999999988522 121 1122111 11
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC--------Chh----hHHHHHHhhcCCCCCcEEEEEc
Q 039885 213 KAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE--------DYN----KWESFRRCLINGQRGSKILVTT 280 (674)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~----~~~~l~~~l~~~~~gs~IivTt 280 (674)
....+ .+...+...+...-...+++|++|+++.. +.. ....+...+.....+.-||.||
T Consensus 297 ----~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 ----GGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ----ccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 00000 01112222222222347899999998531 000 1112222232233444566677
Q ss_pred CChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHHcCCCh
Q 039885 281 RKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSL-ECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 281 R~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~-~~~~l~~~~~~I~~~c~GlP 340 (674)
.+.. +.+...-...+.++.-+.++-.++|..+........ ...++ ..+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl----~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI----KKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH----HHHHhhcCCCC
Confidence 5443 111112245788888888888899987764432211 11233 33666665554
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.48 E-value=0.0084 Score=57.27 Aligned_cols=57 Identities=23% Similarity=0.174 Sum_probs=36.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGS 222 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~ 222 (674)
++||.+||+.|+||||.+.+++.....+ =..+..++... .....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3689999999999998887776643222 23445566542 234556677777777654
No 269
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.47 E-value=0.015 Score=52.50 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999875
No 270
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.46 E-value=0.0091 Score=60.69 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=45.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc-cccceEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI-NHFGKRIWVCVSDP-FDEYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
..++++|+|++|+||||++..++.....+ +.+ .+..|+.... ....+.+....+.++.......+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 46799999999999999998887643222 112 3444544321 1222333333333333322223334444444433
Q ss_pred CCCeEEEEEeCC
Q 039885 241 AREKFLLVLDDV 252 (674)
Q Consensus 241 ~~kr~LlVlDdv 252 (674)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 32 347777753
No 271
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.46 E-value=0.013 Score=60.25 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=41.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhhC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI----NHFGKRIWVCVSDPFDEYRIAKAIIEALEG 221 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 221 (674)
.-.++-|+|++|+|||+|+..++-..... ..=..++||+.-..|+++++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 56789999999999999997765321111 1113678999999898888754 5666543
No 272
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.42 E-value=0.02 Score=53.73 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=60.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHhhCCC--CC-------cccHHHH
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD--PFDEYRIAKAIIEALEGSA--TN-------LVELNAL 232 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~--~~-------~~~~~~~ 232 (674)
-.+++|+|..|.|||||.+.+..... .....+++.-.. ........+.+. .+.... .. .+..+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 35799999999999999999986321 222323221100 011111111100 000000 00 1122223
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
.-.+.+.+..+.-+++||+... -|......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3345566666777999998643 2333344444444321 24667888888776554
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.41 E-value=0.0018 Score=70.24 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=39.4
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+++|.++.+++|++.|.....+....-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6899999999999999322111133557999999999999999999987
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.022 Score=56.03 Aligned_cols=126 Identities=18% Similarity=0.184 Sum_probs=71.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-----CCCHHHHHHHHHHHhhCCC------C-CcccHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-----PFDEYRIAKAIIEALEGSA------T-NLVELN 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~il~~l~~~~------~-~~~~~~ 230 (674)
...+++|||..|+||||+++.+..- .+--.+.++..-.+ .....+-..++++.++... + +.+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3468999999999999999999873 22222333332111 1123344556666665432 1 122222
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcC--CCCCcEEEEEcCChhHHhhcCC
Q 039885 231 ALLLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLIN--GQRGSKILVTTRKETVAGMMES 291 (674)
Q Consensus 231 ~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~IivTtR~~~va~~~~~ 291 (674)
.-.-.+.+.|.-+.-|+|.|..-.. +...-.++...+.. ...|-..+..|.+-.++..++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2234477888889999999986332 11122223333322 2345667777777777776544
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.033 Score=59.94 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD--EYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
.+++.++|++|+||||++..++........-..+..|+... +. ..+-++...+.++.......+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 46999999999999999887765322011223445555432 22 12223333333333222223334455555432 2
Q ss_pred CCeEEEEEeCCCC--CChhhHHHHHHhhc
Q 039885 242 REKFLLVLDDVWT--EDYNKWESFRRCLI 268 (674)
Q Consensus 242 ~kr~LlVlDdv~~--~~~~~~~~l~~~l~ 268 (674)
..=+|++|..-. .+......+...+.
T Consensus 299 -~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 -DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred -CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 345888996532 23333444555444
No 276
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.00035 Score=68.28 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=85.1
Q ss_pred HHHHHHhhcccceEeccCCCcCCccccCCCCCceeEEEEEcCC-cCC--ccccccCCCCceEEEecCCCcccccchhHhh
Q 039885 441 HDFAQYLTKNECFSTEANGHEEPLSLINTPKEKLRHSMLMLGF-EAS--FPDSLLNAKKLRSFLISSPYDVFSSVLPRLF 517 (674)
Q Consensus 441 ~d~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~-~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 517 (674)
|-+...-++-.|..+++....++..-...-.+.++.++++... +++ +.--+.+++.|..|+++.+.. +.......+
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l-~~~~Vtv~V 281 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL-FTEKVTVAV 281 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc-cchhhhHHH
Confidence 3333444444555555443333221111224567777776542 222 222356777888888877651 111111111
Q ss_pred c-cCCceeEEEeccccccccccc----cccccccccCCCCCcceeecCCC-Cc-cccccccCCCcccEEEeccccccccc
Q 039885 518 D-QLTCLRTLKIVAHDRRWSRGM----IREIPKEIEKLIHLRFLQLRDLM-ID-ELPETCCELFNLQTLEIRQRGYYLRR 590 (674)
Q Consensus 518 ~-~l~~Lr~L~L~~~~~~~~~~~----l~~lp~~i~~L~~Lr~L~L~~~~-i~-~lP~~i~~L~~L~~L~l~~~~~~~~~ 590 (674)
. =-..|..|+| +|+. .+.+..-....++|..||||.|. ++ .+-..+-+++.||+|.++.| + .-
T Consensus 282 ~hise~l~~LNl-------sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC-Y--~i 351 (419)
T KOG2120|consen 282 AHISETLTQLNL-------SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC-Y--DI 351 (419)
T ss_pred hhhchhhhhhhh-------hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh-c--CC
Confidence 1 1235677777 5553 11232233467778888888775 44 33345677888888888888 3 33
Q ss_pred cccc---cccCccCCeeeeeeeC
Q 039885 591 LPHG---FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 591 lP~~---i~~L~~L~~L~l~~~~ 610 (674)
.|.. +..+++|.+|++|++-
T Consensus 352 ~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 352 IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ChHHeeeeccCcceEEEEecccc
Confidence 4443 5677788888886543
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.034 Score=52.12 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=62.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe-----------------CCCCC---HHHHHHHHHHHhhCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV-----------------SDPFD---EYRIAKAIIEALEGSA 223 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-----------------s~~~~---~~~~~~~il~~l~~~~ 223 (674)
-.+++|+|..|.|||||++.++.... .....+++.- .+... ...+...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------- 95 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------- 95 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------
Confidence 45899999999999999999977421 2223333311 11000 001111110
Q ss_pred CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 224 TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 224 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
.+..+...-.+.+.+..+.-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 96 --LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 --LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred --cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 11222233346677777888999998643 2334444454444432 23677888888776544
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.32 E-value=0.031 Score=55.23 Aligned_cols=116 Identities=21% Similarity=0.150 Sum_probs=64.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC------------------
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA------------------ 223 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------------ 223 (674)
+.-.++.|+|.+|+|||+||.++.... .+ .=..++|++..+ ++.++.+.+ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356789999999999999998885421 11 223567888765 445555543 2222110
Q ss_pred --CCcccHHHHHHHHHHHcCC-CeEEEEEeCCC----CCChhhHHHHHHhhcC-CCCCcEEEEEcCC
Q 039885 224 --TNLVELNALLLRINESIAR-EKFLLVLDDVW----TEDYNKWESFRRCLIN-GQRGSKILVTTRK 282 (674)
Q Consensus 224 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~----~~~~~~~~~l~~~l~~-~~~gs~IivTtR~ 282 (674)
....+.+.+...+.+.+.. +.-++|+|.+- ..+......+...+.. ...|..+++|+..
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 0112335566666666643 55589999874 1222222233222221 2245567777653
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.31 E-value=0.0034 Score=60.16 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=53.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc----
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESI---- 240 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l---- 240 (674)
+++.|.|.+|.||||+++.+....... ...+.+.......... +.+..+.. ...+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 578889999999999999887632222 2333333333222222 22222211 111111111000000
Q ss_pred --CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC
Q 039885 241 --AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 241 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR 281 (674)
..+.-+||+|++.-.+...+..+...... .|+|+|+.--
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12335999999987776777777766655 5678876543
No 280
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.021 Score=60.23 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...++.++|++|+||||++..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988763
No 281
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.30 E-value=0.084 Score=51.13 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=87.2
Q ss_pred CceeechhhH---HHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEK---STLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
.++||-++.+ .-|++.|..+..-.+-..+-|..+|++|.|||.+|+++.+...+ -| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHHH--
Confidence 4689987655 44666776544222456788999999999999999999996332 22 1111 1111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHH-HHHcCCCeEEEEEeCCCCCC------------hhhHHHHHHhhcC--CCCCcEEEE
Q 039885 214 AIIEALEGSATNLVELNALLLRI-NESIAREKFLLVLDDVWTED------------YNKWESFRRCLIN--GQRGSKILV 278 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~Iiv 278 (674)
|-+.++ +....++.+ .+.-+.-.+.+.+|.++-.. .+..+.+..-+.. .+.|..-|.
T Consensus 188 -iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111111 111112222 22224568999999874210 1223333333332 245666666
Q ss_pred EcCChhHHhhc-C--CCCeEeCCCCChHhhHHHHHHHhh
Q 039885 279 TTRKETVAGMM-E--STDVISIKELSERECWSLFERIAF 314 (674)
Q Consensus 279 TtR~~~va~~~-~--~~~~~~l~~L~~~~~~~Lf~~~a~ 314 (674)
.|-+....... . -..-++...-+++|-..++..++-
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 66655443321 1 134566667778888888888773
No 282
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.024 Score=65.02 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=74.9
Q ss_pred ceeechhhHHHHHHHhcCCCCCCC--CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQ--NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
.++|-++.+..|.+.+.....+-. .....+.+.|+.|+|||.||+++..- +-+..+..+-++.|. ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-h
Confidence 478888888888888865442212 25677889999999999999988762 222233444444443 222 2
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeE-EEEEeCCCCCChhhHHHHHHhhcCC
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKF-LLVLDDVWTEDYNKWESFRRCLING 270 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 270 (674)
.+.++.. +.- -..+....|.+.++.+.| +|+||||...+......+...+..+
T Consensus 634 skligsp-~gy-vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSP-PGY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCC-ccc-ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2222222 111 111223456667777766 6668999888777777676666654
No 283
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.29 E-value=0.019 Score=59.89 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=70.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
..++|+++.+..+...+.... -+.+.|.+|+|||+||+.+... .. ...++|.+.....+.++.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchh
Confidence 348998888888888777543 3889999999999999999873 22 2345677777777776655443
Q ss_pred HHhhC---CCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcC
Q 039885 217 EALEG---SATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLIN 269 (674)
Q Consensus 217 ~~l~~---~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 269 (674)
-.... ......+.. .+..-+.++.+|.++...+..-..+...+..
T Consensus 91 ~~~~~~~~~~~~~~~gp--------l~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 91 YAALLLEPGEFRFVPGP--------LFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred HhhhhccCCeEEEecCC--------cccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 33221 100000000 0011115899999998776666666666544
No 284
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.27 E-value=0.02 Score=59.48 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=41.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhhC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI----NHFGKRIWVCVSDPFDEYRIAKAIIEALEG 221 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 221 (674)
.-.++-|+|.+|+|||+|+..++-..... ..-..++||+....|.++++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 55788899999999999998775322221 1124678999999999888755 5555543
No 285
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.27 E-value=0.0096 Score=61.04 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=52.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA-----TNLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 237 (674)
.-+++-|+|++|+||||||.+++.. ....-..++||+.-+.+++. .+++++... .+..+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5678999999999999999887653 22233467788877766653 233333221 12234455555555
Q ss_pred HHcC-CCeEEEEEeCC
Q 039885 238 ESIA-REKFLLVLDDV 252 (674)
Q Consensus 238 ~~l~-~kr~LlVlDdv 252 (674)
..++ +.--+||+|-|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5553 35568999987
No 286
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.27 E-value=0.021 Score=59.40 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=41.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhhC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEALEG 221 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 221 (674)
...++-|+|.+|+|||+||..++-...... .-..++||+....|.++++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 567889999999999999987764322111 11368899999999888764 55665543
No 287
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.25 E-value=0.01 Score=60.82 Aligned_cols=85 Identities=18% Similarity=0.122 Sum_probs=53.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHH
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA-----TNLVELNALLLRI 236 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 236 (674)
+.-+++-|+|++|+||||||.++.... ...=..++||+.-+.++.. .+++++... .+....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 356899999999999999998776532 2223456788777665553 234443321 1223445555555
Q ss_pred HHHcC-CCeEEEEEeCCC
Q 039885 237 NESIA-REKFLLVLDDVW 253 (674)
Q Consensus 237 ~~~l~-~kr~LlVlDdv~ 253 (674)
...++ +.--+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456699999874
No 288
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.25 E-value=0.007 Score=58.13 Aligned_cols=110 Identities=12% Similarity=0.175 Sum_probs=58.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH-HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY-RIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
++|.|+|+.|.||||++..+... ........++.- .++.... .-...++.+-. . ..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~---v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQRE---V-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeecc---c-CCCccCHHHHHHHHhcCC
Confidence 46899999999999999987663 222333344332 2211100 00001111100 0 111223455677777767
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHH
Q 039885 244 KFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVA 286 (674)
Q Consensus 244 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va 286 (674)
.=.|++|++.+. +.+..+.... ..|..++.|+....+.
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 779999999643 4444433332 2455677777655444
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.082 Score=52.87 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=46.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccc--cccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVI--NHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
-++|.++|++|.|||+|.+++++.-.++ ..|....-+.++. ..+...-.++. ..-...+.++|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--------hsLFSKWFsES--gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--------HSLFSKWFSES--GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh--------hHHHHHHHhhh--hhHHHHHHHHHHHHHh
Confidence 4889999999999999999999865443 3444333343332 11222222211 1234455666677776
Q ss_pred CCeE--EEEEeCC
Q 039885 242 REKF--LLVLDDV 252 (674)
Q Consensus 242 ~kr~--LlVlDdv 252 (674)
++.. ++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 5543 4557888
No 290
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.21 E-value=0.067 Score=59.92 Aligned_cols=134 Identities=14% Similarity=0.120 Sum_probs=74.5
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCCCCCHHHHHH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND-VINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
....++|....+.++.+.+..-.. ....|.|+|..|+|||++|+.+++... .... .+.|++..- . ...+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~-~-~~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAAL-S-ETLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCC-C-HHHHH
Confidence 345799999999998887764332 223477999999999999999987422 1122 233444432 1 22222
Q ss_pred HHHHHhhCCCCCc-cc-HHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEc
Q 039885 214 AIIEALEGSATNL-VE-LNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTT 280 (674)
Q Consensus 214 ~il~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTt 280 (674)
. .+.+..... .. .......+ -....=.|+||+|..-.......+...+..+. ...|||.||
T Consensus 265 ~---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 265 S---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred H---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 1 121211100 00 00000000 01123458899998877777777877775432 125888887
Q ss_pred CCh
Q 039885 281 RKE 283 (674)
Q Consensus 281 R~~ 283 (674)
...
T Consensus 339 ~~~ 341 (534)
T TIGR01817 339 NRD 341 (534)
T ss_pred CCC
Confidence 543
No 291
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.20 E-value=0.016 Score=60.39 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=72.1
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
.++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+...... .-...+.|++... +...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 589999888888887764332 2234889999999999999999763211 1112234444432 22222222221
Q ss_pred HhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 039885 218 ALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRKE 283 (674)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 283 (674)
.-.+....... .....+. ....=.|+||||..-.......+...+..+. ...|||.||...
T Consensus 80 ~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 10000000000 0001111 1122247899998877777777777765432 135888887643
No 292
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.19 E-value=0.026 Score=58.18 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=39.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
...++.|+|.+|+|||+|+..++....... .-..++|++....+...++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 568899999999999999988764211111 1135689998888888764 44555543
No 293
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.17 E-value=0.29 Score=50.20 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=38.9
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 212 (674)
++=..+....++..+... +.|.|.|.+|+||||+|+.++.. .... .+.|..+...+..++.
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhcC
Confidence 444444556677777532 34999999999999999999873 2222 2345555555554433
No 294
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.13 E-value=0.039 Score=57.24 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=40.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCCCCHHHHHHHHHHHh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINH----FGKRIWVCVSDPFDEYRIAKAIIEAL 219 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l 219 (674)
...++-|+|++|+|||++|..++........ =..++||+....|++.++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 5678999999999999999887653221111 14788999998888877654 44444
No 295
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.02 Score=60.80 Aligned_cols=53 Identities=28% Similarity=0.247 Sum_probs=38.5
Q ss_pred Cceeech---hhHHHHHHHhcCCCCC---CCCceEEEEEEecCCChHHHHHHHHhcCcc
Q 039885 137 SDVCGRV---EEKSTLKSKLLGEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYNDND 189 (674)
Q Consensus 137 ~~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 189 (674)
.++-|-| .|+++|+++|.++..- ...=++-|.++|++|.|||-||++|+-+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 3566766 4778888888765421 022356789999999999999999988643
No 296
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.063 Score=58.77 Aligned_cols=53 Identities=26% Similarity=0.240 Sum_probs=37.5
Q ss_pred ccCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-+++=|.++-+.+|.+........ .-...+-|..+|++|.|||++|+.+.+.
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 3345667887777777655432211 0235678999999999999999999985
No 297
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.10 E-value=0.05 Score=56.67 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=57.5
Q ss_pred ceEEEEEEecCCChHH-HHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 163 AVQTISLVGMGGIGKT-TLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKT-tLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
+.+||.+||+.|+||| |||+..+.-... ..=..+..|+... .....+-++..++-++.+-.-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 4789999999999999 677665543211 2223445555433 23445555556666655544344445554444332
Q ss_pred CCCeEEEEEeCCCCC--ChhhHHHHHHhhcCC
Q 039885 241 AREKFLLVLDDVWTE--DYNKWESFRRCLING 270 (674)
Q Consensus 241 ~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~ 270 (674)
++. =+|.+|=+-.. +.....++...+...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 222 35666765332 234455565555544
No 298
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.02 Score=61.81 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=62.3
Q ss_pred cCceeechhhHHHHHHHhcCCCCC------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSE------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.++=|.+..+.++.+++..-... .-...+-|.++|++|.|||.||+++.++..+ . ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch----
Confidence 346789999888888877532110 0234567889999999999999999985322 2 2333321
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWT 254 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 254 (674)
+|+..+.+ .+.+.+.+...+.-..-.+++++|+++-
T Consensus 258 ----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 23333322 2333444444555567899999999853
No 299
>PRK09354 recA recombinase A; Provisional
Probab=96.09 E-value=0.015 Score=60.07 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=54.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHH
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA-----TNLVELNALLLRI 236 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 236 (674)
+.-+++-|+|++|+||||||.+++... ...=..++||+.-..++.. .+++++.+. .+....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 356799999999999999998776532 2233567899887777653 344443321 1223455555555
Q ss_pred HHHcC-CCeEEEEEeCCC
Q 039885 237 NESIA-REKFLLVLDDVW 253 (674)
Q Consensus 237 ~~~l~-~kr~LlVlDdv~ 253 (674)
...++ ++--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 455699999874
No 300
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.12 Score=58.28 Aligned_cols=184 Identities=17% Similarity=0.142 Sum_probs=102.2
Q ss_pred Cceeechh---hHHHHHHHhcCCCCCC---CCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVE---EKSTLKSKLLGEGSEQ---QNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~---~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
.++.|-++ |+.+++++|..+...+ ..-++=+.++|++|.|||-||++++-...+ -|+++|.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSG------ 377 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSG------ 377 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeech------
Confidence 46788775 5555555665432111 234567889999999999999999986332 2344443
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC---------------hhhHHHHHHhhcCCCC--C
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED---------------YNKWESFRRCLINGQR--G 273 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~--g 273 (674)
.+.++.+.+.. ..... +.....=....++|.+|+++... ....+++..-+..... +
T Consensus 378 --SEFvE~~~g~~--asrvr---~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 378 --SEFVEMFVGVG--ASRVR---DLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHHhcccc--hHHHH---HHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 12222222211 11111 11122223467788888774311 1234444444433222 2
Q ss_pred cEEEEEcCChhHHhh--cC---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHH
Q 039885 274 SKILVTTRKETVAGM--ME---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVK 344 (674)
Q Consensus 274 s~IivTtR~~~va~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 344 (674)
--+|-+|...++... +. -...+.++.-+.....++|.-++-.-.. ..+..++++ |+...-|.+=|..
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHHH
Confidence 233445555544332 11 2457888888888889999888743332 234566666 8889988886544
No 301
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.05 E-value=0.061 Score=59.15 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=42.2
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV 202 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 202 (674)
+++-=.+-++++..||...-.+ ....+++.+.|++|+||||.++.++++ -.|+.+-|.+-
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecCC
Confidence 3444456778888888653221 224569999999999999999999875 24666667643
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.047 Score=57.21 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=50.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
...++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.......+...+...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 357899999999999999999876422111122344554322 224455566666666544322222233333333 334
Q ss_pred CCeEEEEEeCCCC
Q 039885 242 REKFLLVLDDVWT 254 (674)
Q Consensus 242 ~kr~LlVlDdv~~ 254 (674)
++ -+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566998743
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.01 E-value=0.033 Score=64.34 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=74.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|+...+..+.+.+..-.. ...-|.|+|..|+|||++|+.+++.... .. ...+.+++..- ....+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~-~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAM-PAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccC-ChhHhhhhhc
Confidence 3699999888888776653321 2235889999999999999999874321 11 12334444432 1111111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRKE 283 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 283 (674)
....+...... ......+. ....=.|+||||..........+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111000000 00111111 1123468999998877777777777775431 245888888653
No 304
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.16 Score=49.76 Aligned_cols=190 Identities=13% Similarity=0.137 Sum_probs=108.4
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc----ccccccceEEEEEeCCC---------
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN----DVINHFGKRIWVCVSDP--------- 205 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~vs~~--------- 205 (674)
+.++++....+..... ....+-..++|+.|.||-|.+..+.++- -.+-.-+.+-|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 6677777777766554 2356778999999999999886664421 11122344445543332
Q ss_pred -C-----------CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC-CeE-EEEEeCCCCCChhhHHHHHHhhcCCC
Q 039885 206 -F-----------DEYRIAKAIIEALEGSATNLVELNALLLRINESIAR-EKF-LLVLDDVWTEDYNKWESFRRCLINGQ 271 (674)
Q Consensus 206 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 271 (674)
+ .-+-+.++|++++.....- ..++ +.| ++|+-.++.-..+....+..-.-.-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1123445555544332210 0112 334 66676665544455555655554444
Q ss_pred CCcEEEEEcCC--hhHHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039885 272 RGSKILVTTRK--ETVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSL 349 (674)
Q Consensus 272 ~gs~IivTtR~--~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 349 (674)
..+|+|+..-+ +-+...-+..-.+.+..-+++|....+.+.+-..+-.. | .+++.+|+++++|.---+..+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 56677764321 11221112223678899999999999988765444322 2 678899999999987655555444
Q ss_pred hc
Q 039885 350 LR 351 (674)
Q Consensus 350 L~ 351 (674)
.+
T Consensus 232 ~~ 233 (351)
T KOG2035|consen 232 VR 233 (351)
T ss_pred HH
Confidence 43
No 305
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.99 E-value=0.072 Score=50.36 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=32.1
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHH
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVA 286 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va 286 (674)
.+...+-.++-++++|+--. -|......+...+... ..|..||++|.+....
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45666777788999998633 2334445555544432 2366788888876433
No 306
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.027 Score=61.12 Aligned_cols=89 Identities=17% Similarity=0.063 Sum_probs=45.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
...+|+|+|++|+||||++..+............+..++... .....+.++...+.++.......+...+...+++. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988875321111122344444321 11222333333333332222222333444444433 3
Q ss_pred CCeEEEEEeCCC
Q 039885 242 REKFLLVLDDVW 253 (674)
Q Consensus 242 ~kr~LlVlDdv~ 253 (674)
+.-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.025 Score=52.03 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=63.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF--DEYRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
.+++|+|..|.|||||++.+.... ......+++.-.... ...... ..+.-. .+.+..+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEE-eeCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998742 223444444321111 111111 111100 0122223333445666666
Q ss_pred CeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHhh
Q 039885 243 EKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 243 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~~ 288 (674)
..-++++|+.-. .|......+...+... ..+..+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 788999998743 2333444444444321 125678888877765544
No 308
>PRK07667 uridine kinase; Provisional
Probab=95.95 E-value=0.0088 Score=57.18 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 566777776543 24589999999999999999999873
No 309
>PTZ00035 Rad51 protein; Provisional
Probab=95.94 E-value=0.052 Score=56.55 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=39.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc---c-ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI---N-HFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|+|.+|+|||+|+..++-....- . .=..++||+....|+++++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 56789999999999999998886432211 1 1235669998887887774 44455543
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=95.94 E-value=0.1 Score=54.04 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=56.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhCCCC---CcccHHH-HHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD--EYRIAKAIIEALEGSAT---NLVELNA-LLLRI 236 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~il~~l~~~~~---~~~~~~~-~~~~l 236 (674)
...+|.++|++|+||||++..++.... ...+. ++.+. .+.+. ..+-++.....++.... ...+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998877765321 12232 23333 33332 33445555666554321 1122222 22333
Q ss_pred HHHcCCCeEEEEEeCCCCC--ChhhHHHHHHhhcCCCCCcEEEE
Q 039885 237 NESIAREKFLLVLDDVWTE--DYNKWESFRRCLINGQRGSKILV 278 (674)
Q Consensus 237 ~~~l~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~Iiv 278 (674)
...-....-+|++|-.-.. +...+.++........+...++|
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 3322222238999987543 23345555444332233333444
No 311
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.94 E-value=0.024 Score=58.97 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=67.8
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCCCCCHHHHHHHHHH
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND-VINHFGKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
+||....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++.... ....| +-|++... . ...+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~-~-~~~l~~~-- 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAAL-S-ENLLDSE-- 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCC-C-hHHHHHH--
Confidence 46777777777776654332 223478999999999999999976422 11222 33444432 1 2222221
Q ss_pred HhhCCCCCc-ccHHH-HHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCC
Q 039885 218 ALEGSATNL-VELNA-LLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRK 282 (674)
Q Consensus 218 ~l~~~~~~~-~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 282 (674)
+.+..... ..... ....+. ....=.|+||+|..........+...+..+. ...|||.||..
T Consensus 70 -lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 70 -LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred -HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11111000 00000 000011 1123458999998777666777777765432 23478888753
No 312
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.93 E-value=0.12 Score=49.95 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=33.0
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
-.+.+.+-.+.-++++|+... -+....+.+...+.....|..||++|.+......
T Consensus 134 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 134 LCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 345556666778899998743 2344445555555443346677777777665543
No 313
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.91 E-value=0.025 Score=55.21 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 314
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.90 E-value=0.069 Score=58.23 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=71.4
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHH-HHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHhhC
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTT-LAQFVYNDNDVINHFGKRIWVCVSDPF--DEYRIAKAIIEALEG 221 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~ 221 (674)
..++|+..+. .-.||.|||..|.|||| |||.+|.+ .|...--|.+.++- .+..+.+.+.+.++.
T Consensus 360 ~R~~ll~~ir--------~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 360 CRDQLLSVIR--------ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred HHHHHHHHHh--------hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 3455555554 34689999999999996 78888885 23222234445543 445667777777754
Q ss_pred CCCC--------------c------ccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhc---CCCCCcEEEE
Q 039885 222 SATN--------------L------VELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLI---NGQRGSKILV 278 (674)
Q Consensus 222 ~~~~--------------~------~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~Iiv 278 (674)
.-.+ . .+.--+.+.|....-.|=-.||+|.+.+... +-+.+...+. .....-|+||
T Consensus 427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEE
Confidence 3211 0 1112233334443334556899999976432 2222333332 2234679999
Q ss_pred EcCChh
Q 039885 279 TTRKET 284 (674)
Q Consensus 279 TtR~~~ 284 (674)
||-..+
T Consensus 506 tSATm~ 511 (1042)
T KOG0924|consen 506 TSATMD 511 (1042)
T ss_pred eecccc
Confidence 987543
No 315
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.093 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3468999999999999999999764
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.88 E-value=0.051 Score=58.39 Aligned_cols=56 Identities=30% Similarity=0.294 Sum_probs=34.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD--EYRIAKAIIEALEG 221 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~il~~l~~ 221 (674)
...+|.++|.+|+||||.|..++.... +..+ .+.-|++. .+. ..+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCC-CCCHHHHHHHHHHHHHcCC
Confidence 467899999999999999998876432 1222 22333332 222 24455555655543
No 317
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.87 E-value=0.058 Score=51.87 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=62.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCc--c-cccc--cc--------------e-EEEEEeCCCCCH--HHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDN--D-VINH--FG--------------K-RIWVCVSDPFDE--YRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~--~-~~~~--F~--------------~-~~wv~vs~~~~~--~~~~~~il~~l~ 220 (674)
.-.+++|+|..|.|||||.+.+.... . ..+. |+ . +.++ .+.... .....+++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYV- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhc-
Confidence 34689999999999999999987752 1 1110 00 0 1121 111100 00111111111
Q ss_pred CCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 221 GSATNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
....+..+...-.+.+.+..+.-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 102 --~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 --NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 01222333334446667777788999998643 2334444454444332 23667888888776555
No 318
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.87 E-value=0.06 Score=55.74 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=40.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
...++-|+|.+|+|||+++..++....... .=..++||+....|+.+++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 467899999999999999988865422211 11268899999888887754 4455443
No 319
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.062 Score=56.81 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=57.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc-ccc-eEEEEEeCCCCC--HHHHHHHHHHHhhCCCCCcccHHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN-HFG-KRIWVCVSDPFD--EYRIAKAIIEALEGSATNLVELNALLLRINE 238 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 238 (674)
..++|.++|+.|+||||.+..++....... .-. .+.-|++. .+. ..+-++...+.++.+.........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988876322211 112 33344443 333 2334555566555443223344455554544
Q ss_pred HcCCCeEEEEEeCCCCCC--hhhHHHHHHhhcC
Q 039885 239 SIAREKFLLVLDDVWTED--YNKWESFRRCLIN 269 (674)
Q Consensus 239 ~l~~kr~LlVlDdv~~~~--~~~~~~l~~~l~~ 269 (674)
. .+.-+|++|..-... ......+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 345688899874422 2234555555543
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.86 E-value=0.066 Score=52.65 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=31.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
...++.|.|.+|+||||||.+++... .+.. ..+++++ ..-+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 34589999999999999986554421 1222 2345555 333556666665
No 321
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.86 E-value=0.082 Score=51.13 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=37.3
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC-CCCCcEEEEEcCChhHHhhcCCCCeEeCCC
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN-GQRGSKILVTTRKETVAGMMESTDVISIKE 299 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va~~~~~~~~~~l~~ 299 (674)
.+...+..+.-++++|+--. -+......+...+.. ...|..||++|.+...... ..++.++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 35556666778999998643 233444555555543 2346678888887654432 45666655
No 322
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.03 Score=52.72 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=60.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE---eCCCC-CHHHHHHHHHHHhhCCC---CC----------c
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC---VSDPF-DEYRIAKAIIEALEGSA---TN----------L 226 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~-~~~~~~~~il~~l~~~~---~~----------~ 226 (674)
-.+++|+|..|.|||||++.+.... ......+.+. ++... ......+.+. .+.... .. .
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIG-MVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEE-EEecCCccCCCCCHHHheeecC
Confidence 3589999999999999999997632 1223333321 11100 0111111000 000000 00 1
Q ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CC-CcEEEEEcCChhHHh
Q 039885 227 VELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QR-GSKILVTTRKETVAG 287 (674)
Q Consensus 227 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~IivTtR~~~va~ 287 (674)
+.-+...-.+...+..+.=++++|+--. -|......+...+... .. |..||++|.+.....
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1122233345666677778999998633 2344444555544432 22 567888887765544
No 323
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.14 Score=48.98 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcC-CCCCcEEEEEcCChhHHhhcCCCCeE
Q 039885 231 ALLLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLIN-GQRGSKILVTTRKETVAGMMESTDVI 295 (674)
Q Consensus 231 ~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va~~~~~~~~~ 295 (674)
.-..++.+.+--++-|.|||..++. |.+....+...+.. ..+|+-+|+.|..+.++....+..+|
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344455555556779999988663 34455555444432 23577788888888888887655444
No 324
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0036 Score=60.59 Aligned_cols=84 Identities=27% Similarity=0.303 Sum_probs=52.8
Q ss_pred hccCCceeEEEecccccccccc--cccc-ccccccCCCCCcceeecCCCCcc---ccccccCCCcccEEEeccccccccc
Q 039885 517 FDQLTCLRTLKIVAHDRRWSRG--MIRE-IPKEIEKLIHLRFLQLRDLMIDE---LPETCCELFNLQTLEIRQRGYYLRR 590 (674)
Q Consensus 517 ~~~l~~Lr~L~L~~~~~~~~~~--~l~~-lp~~i~~L~~Lr~L~L~~~~i~~---lP~~i~~L~~L~~L~l~~~~~~~~~ 590 (674)
|..|++|+.|++ +.| .+.. ++...-++++|++|+|++|+|.- ++ .+.+|.+|..||+.+| . ...
T Consensus 61 ~P~Lp~LkkL~l-------sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~-~-~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLEL-------SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNC-S-VTN 130 (260)
T ss_pred CCCcchhhhhcc-------cCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccC-C-ccc
Confidence 455667777777 666 3333 55445555778888888887653 32 2566777778888877 3 333
Q ss_pred ccc----ccccCccCCeeeeeeeC
Q 039885 591 LPH----GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 591 lP~----~i~~L~~L~~L~l~~~~ 610 (674)
+-. .|.-|++|.+|+-+.+.
T Consensus 131 l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 131 LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccHHHHHHHHhhhhccccccccC
Confidence 321 25667788888875544
No 325
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.12 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999764
No 326
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.80 E-value=0.036 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.5
Q ss_pred CceEEEEEEecCCChHHHHHHHHhc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999987754
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.79 E-value=0.057 Score=54.21 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=66.6
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE---eCCCCCHHHHHHHHHHHhhC
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVC---VSDPFDEYRIAKAIIEALEG 221 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~il~~l~~ 221 (674)
..+.++..|... ....-++|+|+.|.|||||.+.+..... .....+++. +....... ++......
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~----ei~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERS----EIAGCVNG 164 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHH----HHHHHhcc
Confidence 445555656532 2457899999999999999999987422 222333331 11111122 22222211
Q ss_pred CC-------CCc-ccHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 222 SA-------TNL-VELNALLLRINESI-AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 222 ~~-------~~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
-. .+. ..... ...+...+ ...+-++++|.+-. .+.+..+...+. .|..||+||....+..
T Consensus 165 ~~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00 000 11111 11222222 24778999999853 345565555553 4778999998766543
No 328
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.79 E-value=0.058 Score=50.48 Aligned_cols=22 Identities=45% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999888763
No 329
>PRK05439 pantothenate kinase; Provisional
Probab=95.77 E-value=0.038 Score=56.38 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=43.7
Q ss_pred CCceEEEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCCCCHHHHHHHHHHHhh--CCCCCcccHHHHHHHH
Q 039885 161 QNAVQTISLVGMGGIGKTTLAQFVYNDNDVINH--FGKRIWVCVSDPFDEYRIAKAIIEALE--GSATNLVELNALLLRI 236 (674)
Q Consensus 161 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l 236 (674)
....-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+.....+.. ..+. ...++.-+.+.+...|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 346789999999999999999988762 2111 122334444443333322221 0111 1123344566666666
Q ss_pred HHHcCCCe
Q 039885 237 NESIAREK 244 (674)
Q Consensus 237 ~~~l~~kr 244 (674)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66655554
No 330
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.76 E-value=0.08 Score=51.74 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
.+...+..+.-++++|+.-. -|......+...+.....+..||++|.+......
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 35556667788999998643 2334444454444432234568888887765543
No 331
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0079 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.--|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999874
No 332
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.75 E-value=0.019 Score=59.07 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+..++|+|++|.|||.+|+.++++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999985
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.73 E-value=0.055 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35799999999999999999843
No 334
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.92 Score=46.33 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=79.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCc--------ccccccceEEEEEe-CCCCCHHHHHHHHHHHhhCCCCCcccHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDN--------DVINHFGKRIWVCV-SDPFDEYRIAKAIIEALEGSATNLVELNALL 233 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 233 (674)
-..+..++|..|.||+++|..+.+.. ....|=+...++.. ......+++. ++.+.+.-..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 45677799999999999998886531 00111112222211 1111111111 1222211100
Q ss_pred HHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHHhh-cCCCCeEeCCCCChHhhHHHHHH
Q 039885 234 LRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVAGM-MESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
.-.+++=++|+|++........+.+...+......+.+|++|.+ ..+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01247778999999877777788888888877777777765543 333322 33466899999999999877765
Q ss_pred H
Q 039885 312 I 312 (674)
Q Consensus 312 ~ 312 (674)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 3
No 335
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.71 E-value=0.0076 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHhcC
Q 039885 167 ISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~ 187 (674)
|.|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 336
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.065 Score=51.13 Aligned_cols=119 Identities=21% Similarity=0.181 Sum_probs=59.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcc---cccc--cc----------eEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDND---VINH--FG----------KRIWVCVSDP-FDEYRIAKAIIEALEGSATNLV 227 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~--F~----------~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~ 227 (674)
-.+++|+|..|.|||||++.++.... .... |+ .+.|+.-... +....+...+.-..... ..+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LS 110 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--GLS 110 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh--cCC
Confidence 46899999999999999999985311 1111 11 1222221111 11112222221110000 222
Q ss_pred cHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChh
Q 039885 228 ELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKET 284 (674)
Q Consensus 228 ~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~ 284 (674)
.-+...-.+.+.+..+.-++++|+--. -|......+...+... ..|..||++|.+..
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 223333445666666778999998633 2333444444444321 23667888877654
No 337
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0018 Score=63.42 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred CceeEEEEEcCCc---CCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc--cccc
Q 039885 472 EKLRHSMLMLGFE---ASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE--IPKE 546 (674)
Q Consensus 472 ~~~r~l~l~~~~~---~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~--lp~~ 546 (674)
..++.+.+.+|.+ ..+...+.+++.|++|+++.|. +...+...-..+.+|++|-| .|+.+.. .-..
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~--L~s~I~~lp~p~~nl~~lVL-------NgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS--LSSDIKSLPLPLKNLRVLVL-------NGTGLSWTQSTSS 141 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc--CCCccccCcccccceEEEEE-------cCCCCChhhhhhh
Q ss_pred ccCCCCCcceeecCCCCccc-------------cccccCCCcccEEEeccccccccccc------------------ccc
Q 039885 547 IEKLIHLRFLQLRDLMIDEL-------------PETCCELFNLQTLEIRQRGYYLRRLP------------------HGF 595 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~l-------------P~~i~~L~~L~~L~l~~~~~~~~~lP------------------~~i 595 (674)
+..++.++.|.+|.|.+..+ -..+..++++..+.++-| .....+| ++.
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchheeeecCcccchhhcccC
Q ss_pred ccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccC--CccCCCCeEE
Q 039885 596 GRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGL--ENKMNLLHLG 667 (674)
Q Consensus 596 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L--~~~~~L~~L~ 667 (674)
..++.+-.|++ +.++.. .-..+.+|..+++|. .|.+.+..-...........| +.+++++.|+
T Consensus 221 e~~p~~~~LnL------~~~~id--swasvD~Ln~f~~l~-dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 221 EPFPSLSCLNL------GANNID--SWASVDALNGFPQLV-DLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCCcchhhhh------cccccc--cHHHHHHHcCCchhh-eeeccCCcccccccCCcceEEEEeeccceEEec
No 338
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.70 E-value=0.11 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|+.|.|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999753
No 339
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.69 E-value=0.024 Score=52.80 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=43.2
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCccc---HHHHHHHHHHHcCC
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVE---LNALLLRINESIAR 242 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~---~~~~~~~l~~~l~~ 242 (674)
++.|.|.+|+||||+|..+..... ...+++.....++ .+..+.|..........-.. ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 589999999999999998876311 1233444444333 34555554444332211111 11233444443332
Q ss_pred CeEEEEEeCC
Q 039885 243 EKFLLVLDDV 252 (674)
Q Consensus 243 kr~LlVlDdv 252 (674)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237888986
No 340
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.051 Score=54.48 Aligned_cols=88 Identities=23% Similarity=0.194 Sum_probs=55.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHH-hhC---CC-CCcccHHHHHHHH
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEA-LEG---SA-TNLVELNALLLRI 236 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~-l~~---~~-~~~~~~~~~~~~l 236 (674)
+.-+++=|+|+.|.||||+|.+++-. ....-..++||+.-+.++++.+.. +... +.. .. .......++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46688889999999999999777653 223334789999999999887543 3333 211 11 1122223344444
Q ss_pred HHHcCCCeEEEEEeCC
Q 039885 237 NESIAREKFLLVLDDV 252 (674)
Q Consensus 237 ~~~l~~kr~LlVlDdv 252 (674)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444568889988
No 341
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.67 E-value=0.1 Score=49.89 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=61.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEE---------------EeCCCC---CHHHHHHHHHHHhhCCCC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWV---------------CVSDPF---DEYRIAKAIIEALEGSAT 224 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---------------~vs~~~---~~~~~~~~il~~l~~~~~ 224 (674)
.-.+++|.|+.|.|||||.+.+..-.. .......+++ .+.+.. ....+...+.-.....
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-- 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--
Confidence 346899999999999999999976420 0111111111 111211 1112222221110000
Q ss_pred CcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChh
Q 039885 225 NLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKET 284 (674)
Q Consensus 225 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~ 284 (674)
..+..+...-.+.+.+..+.-++++|+.-. -|......+...+... ..|..||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 222233333446666667778999998643 2334445555554432 24677888887753
No 342
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.67 E-value=0.11 Score=50.07 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
.+.+.+..+.-+++||+--. -|......+...+... ..|..||++|.+.....
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 35556666778999998643 2334444454444332 34667888888765443
No 343
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.18 Score=49.76 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
.-.+.+.+..+.-+++||+.-. -|......+...+.....|..||++|.+......
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3345566666677999998643 2344445555555433346678888887665543
No 344
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.66 E-value=0.037 Score=53.51 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=49.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHHH-----
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF-DEYRIAKAIIEALEGS-------ATNLVELNA----- 231 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~----- 231 (674)
..++|+|.+|+|||+|++.+.+.. .-+..+++.+.+.. ...++.+++...-..+ ..+.....+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999998753 23344777777643 3445555553321111 111111111
Q ss_pred HHHHHHHHc--CCCeEEEEEeCC
Q 039885 232 LLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 232 ~~~~l~~~l--~~kr~LlVlDdv 252 (674)
..-.+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111122333 799999999999
No 345
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.65 E-value=0.0084 Score=57.39 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=42.8
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccc---eEEEEEeCCCCCHHHHHHHHHHHh----hCCCCCcccHHHHHHHHHH
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFG---KRIWVCVSDPFDEYRIAKAIIEAL----EGSATNLVELNALLLRINE 238 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~~ 238 (674)
||+|.|.+|+||||+|+.+...... ..+. ....+............. .-... .-..+...+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999773211 1122 122233222222222211 11111 1112345667777777777
Q ss_pred HcCCCeEEE
Q 039885 239 SIAREKFLL 247 (674)
Q Consensus 239 ~l~~kr~Ll 247 (674)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665443
No 346
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.65 E-value=0.13 Score=50.31 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=32.4
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
.+...+-..+-++++|+--. -|....+.+...+... ..|..||++|.+.....
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 35556666778999998643 2334444454444332 24667888888876553
No 347
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.63 E-value=0.12 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999764
No 348
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.13 Score=50.78 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
.-.+.+.+..+.-+++||+... -+......+...+.....|..||++|.+......
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 3445666777888999998744 2334445555555433236678888887765543
No 349
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.63 E-value=0.051 Score=50.23 Aligned_cols=119 Identities=18% Similarity=0.056 Sum_probs=63.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEE--EEEeCCCCCHHHHHHHHHHHh---hCC----CCC-c---ccHH
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRI--WVCVSDPFDEYRIAKAIIEAL---EGS----ATN-L---VELN 230 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~il~~l---~~~----~~~-~---~~~~ 230 (674)
...|-|++..|.||||.|..+.-. .....+.+.+ |+.-.........+..+.-.+ +.. ..+ . ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 357888888999999999766442 1222232211 333332233334443320000 000 000 0 1122
Q ss_pred HHHHHHHHHcCCCe-EEEEEeCCCC---CChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 231 ALLLRINESIAREK-FLLVLDDVWT---EDYNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 231 ~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
...+..++.+...+ -|+|||.+-. ...-..+++...+.....+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 33444555565544 4999999831 11224456777776667778999999976
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.63 E-value=0.14 Score=49.68 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=57.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC---CcccHHHHHHHHHH--
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT---NLVELNALLLRINE-- 238 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~-- 238 (674)
.+++.|+|+.|.|||||.+.+...... .+-...+|. .. .. ...+.++...+..... ..+....-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999988632111 111111111 00 00 0011112222221110 01111111122222
Q ss_pred HcCCCeEEEEEeCCCCC-ChhhH----HHHHHhhcCC-CCCcEEEEEcCChhHHhhc
Q 039885 239 SIAREKFLLVLDDVWTE-DYNKW----ESFRRCLING-QRGSKILVTTRKETVAGMM 289 (674)
Q Consensus 239 ~l~~kr~LlVlDdv~~~-~~~~~----~~l~~~l~~~-~~gs~IivTtR~~~va~~~ 289 (674)
.+..++.|++||+.-.. +..+. ..+...+... ..+..+|+||.....+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 23467899999998542 22111 1223333322 2345799999988877654
No 351
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.60 E-value=0.01 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999863
No 352
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.59 E-value=0.16 Score=51.34 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=36.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|.|.+|+||||++..+..... ..+=..++|++... ...++...+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 345788999999999999988766421 12123567777655 55667766665543
No 353
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.58 E-value=0.13 Score=50.28 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
.+.+.+..+.-+++||+... -+......+...+.....+..||++|.+......
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 35555666677999998744 2334444555555433334567777776655443
No 354
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.11 Score=49.92 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC-CCCCcEEEEEcCChhHHhh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN-GQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va~~ 288 (674)
-.+.+.+..+.-++++|+.-. -+...-..+...+.. ...|..||++|.+......
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 345566666778999998643 233333444444443 1346779999987765543
No 355
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.021 Score=51.27 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=32.6
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGS 222 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 222 (674)
+|.|.|++|+||||+|+.+.++.... + | +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---e------eccHHHHHHHHHcCCC
Confidence 68999999999999999998853211 1 1 3346788888887654
No 356
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.56 E-value=0.13 Score=50.49 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhhcCCCCeEeC
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGMMESTDVISI 297 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~~~~~~~~~l 297 (674)
-.+.+.+..+.-+++||+--. -+......+...+..- ..|..||++|.+...... ...++.+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~--~d~i~~l 210 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH--ADKVITL 210 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh--CCEEEEE
Confidence 335566666778999998633 3344555555555432 236678888887766543 3344443
No 357
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.087 Score=52.43 Aligned_cols=125 Identities=13% Similarity=0.091 Sum_probs=64.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccc-c--ccc--eEEEEEeC----CCCCHHHHHH--------------HHHHHhh
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVI-N--HFG--KRIWVCVS----DPFDEYRIAK--------------AIIEALE 220 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~--~~~wv~vs----~~~~~~~~~~--------------~il~~l~ 220 (674)
-.+++|+|..|+|||||++.+....... + .++ .+.++.-. ...++.+.+. ++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4689999999999999999997642211 1 111 12222111 0112333222 1222222
Q ss_pred CCC------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 221 GSA------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 221 ~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
... ...+.-+...-.+...|..+.-+++||+--. -|......+...+... ..|..||++|.+...+..
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 111 0112222233346667777888999998643 2333444444444332 235678888887665543
No 358
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.14 Score=49.62 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=32.0
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHH
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVA 286 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va 286 (674)
-.+.+.+..+.-+++||+--. -|......+...+... ..|..||++|.+....
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 335566667788999998643 2334444455555432 2366788888776543
No 359
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.12 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+++|+|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999975
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.53 E-value=0.14 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998777653
No 361
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.52 E-value=0.11 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999998864
No 362
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.52 E-value=0.046 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.3
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+...+|+|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998873
No 363
>PRK08233 hypothetical protein; Provisional
Probab=95.51 E-value=0.01 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999864
No 364
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.51 E-value=0.011 Score=57.38 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 365
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.17 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|+.|.|||||++.++.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 366
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.48 E-value=0.12 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 367
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.023 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 368
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.48 E-value=0.16 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 369
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.47 E-value=0.2 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357999999999999999999764
No 370
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.46 E-value=0.2 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999864
No 371
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.0014 Score=63.57 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=70.7
Q ss_pred CCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccc--ccc
Q 039885 494 AKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPE--TCC 571 (674)
Q Consensus 494 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~--~i~ 571 (674)
+.+.+.|++.++. +.. -....+|+.|.||.| +-|.|+.+- .+..++.|+.|.|+.|.|..|-+ -+.
T Consensus 18 l~~vkKLNcwg~~--L~D--Isic~kMp~lEVLsL-------SvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDD--ISICEKMPLLEVLSL-------SVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCC--ccH--HHHHHhcccceeEEe-------eccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 4455666777766 433 134678888999999 888888764 46778888888888888877654 367
Q ss_pred CCCcccEEEeccccccccccccc-----cccCccCCeeee
Q 039885 572 ELFNLQTLEIRQRGYYLRRLPHG-----FGRLVNLRHLSE 606 (674)
Q Consensus 572 ~L~~L~~L~l~~~~~~~~~lP~~-----i~~L~~L~~L~l 606 (674)
+|++|.+|.|..| ...++-+.. +.-|+||+.||=
T Consensus 86 nlpsLr~LWL~EN-PCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 86 NLPSLRTLWLDEN-PCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cCchhhhHhhccC-CcccccchhHHHHHHHHcccchhccC
Confidence 8888888888887 555555432 556777777764
No 372
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.45 E-value=0.13 Score=49.35 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 373
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.45 E-value=0.13 Score=50.41 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=32.8
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 287 (674)
-.+.+.+..+.-++++|+--. -|......+...+... ..|..||++|.+.....
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 345666777788999998633 2334444454444432 24667888887776443
No 374
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.45 E-value=0.15 Score=56.29 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
..++|......++...+..... ....|.|+|.+|+|||++|+.+...... .. ...+.++++.- +...+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~s~~-~~-~~~i~i~c~~~-~~~~~~~~-- 208 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRHSPR-AK-APFIALNMAAI-PKDLIESE-- 208 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhcCCC-CC-CCeEeeeCCCC-CHHHHHHH--
Confidence 3689998888888776653321 2345889999999999999999874211 11 12233444332 22222222
Q ss_pred HHhhCCCCCc-ccHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 039885 217 EALEGSATNL-VELNALLLRINESI-AREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRKE 283 (674)
Q Consensus 217 ~~l~~~~~~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 283 (674)
+.+..... ....... ...+ ....=-++||++..........+...+..+. ...|||+||...
T Consensus 209 --lfg~~~g~~~~~~~~~---~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 209 --LFGHEKGAFTGANTIR---QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred --hcCCCCCCCCCCCcCC---CCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC
Confidence 22211100 0000000 0001 1111246889998777777777777765432 123899888643
No 375
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.43 E-value=0.12 Score=51.04 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=32.9
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAG 287 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~ 287 (674)
.+.+.+..+.-+++||+.-. -|......+...+..- ..|..||++|.+.....
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 35566666778999998643 2344445555555432 24667888887776554
No 376
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.19 Score=49.39 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=34.0
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
.-.|.+.+..+.-+++||+-.. -|......+...+.....|..||++|.+......
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3345566667788999998643 2334444454444433346678888887765543
No 377
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.42 E-value=0.24 Score=48.96 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 236 INESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 236 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
+.+.+-.++-+++||+... -|......+...+.....|..||++|.+......
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 4555556677999998744 2344445555555433346778888887766543
No 378
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.42 E-value=0.091 Score=49.75 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=29.0
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
+.|.|++|+|||+||..+..... +.. ..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g-~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARG-EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCC-CcEEEEECCC--CHHHHHHH
Confidence 67999999999999988765321 111 3466776654 45555444
No 379
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.42 E-value=0.011 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988874
No 380
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.42 E-value=0.064 Score=59.57 Aligned_cols=134 Identities=14% Similarity=0.201 Sum_probs=75.8
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
...++|....++++.+.+..-.. .-.-|.|+|..|+|||++|+.+...... .-...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHH--
Confidence 35699999999998888865432 2345889999999999999999874221 111234455554321 2221
Q ss_pred HHHhhCCCCCc-cc-HHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCC
Q 039885 216 IEALEGSATNL-VE-LNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRK 282 (674)
Q Consensus 216 l~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 282 (674)
..+.+..... .. .......+. ..+.. -|+||+|..........+...+..+. ...|||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~--~a~gG-tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE--LADGG-TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh--hcCCC-EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1222211100 00 000000011 12222 36899998877777777877775432 14588888864
Q ss_pred h
Q 039885 283 E 283 (674)
Q Consensus 283 ~ 283 (674)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 381
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.14 Score=55.46 Aligned_cols=181 Identities=19% Similarity=0.253 Sum_probs=99.4
Q ss_pred ceeechhhHHHHHHHhcCCCCCC-------CCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQ-------QNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
++=|.++-..++...+..+...+ -....-|.++|++|+|||-||++|+|. .+-.| ++|..+ +
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----E 580 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----E 580 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----H
Confidence 34455556666666555432210 123456889999999999999999995 33454 343321 1
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-------C----hhhHHHHHHhhcCC--CCCcEEE
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-------D----YNKWESFRRCLING--QRGSKIL 277 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~----~~~~~~l~~~l~~~--~~gs~Ii 277 (674)
++.. .++ .+...+....++.-..-.+.|.||.++.- . .....++..-+... ..|.-||
T Consensus 581 LlNk---YVG------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 581 LLNK---YVG------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHHH---Hhh------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEE
Confidence 1111 111 11223333344444578899999998431 0 11234444444332 3566667
Q ss_pred EEcCChhHHhh--c---CCCCeEeCCCCChHhhHHHHHHHhhcCCCC-CChhhHHHHHHHHHHHcCCCh
Q 039885 278 VTTRKETVAGM--M---ESTDVISIKELSERECWSLFERIAFFNRPS-LECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 278 vTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~-~~~~~l~~~~~~I~~~c~GlP 340 (674)
-.|-..++-.. + .-.....+..-+.+|-.++++...-....+ ..+-++.++++. .+|.|.-
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 66654443221 1 224577777778888889998876532222 223466665542 4566654
No 382
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.41 E-value=0.15 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 383
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.40 E-value=0.18 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999763
No 384
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.40 E-value=0.25 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.++..
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 385
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.14 Score=53.36 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=58.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP-FDEYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
...+++.|+|+.|+||||++..++.... ... ..+.+|++... ....+-++...+.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL-KQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 3568999999999999999988876421 112 23455655422 22344555555555543222334555555554432
Q ss_pred -CCCeEEEEEeCCCC--CChhhHHHHHHhh
Q 039885 241 -AREKFLLVLDDVWT--EDYNKWESFRRCL 267 (674)
Q Consensus 241 -~~kr~LlVlDdv~~--~~~~~~~~l~~~l 267 (674)
.+..=+|++|-.-. .+.....++....
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 13446888897743 2223344454433
No 386
>PRK06547 hypothetical protein; Provisional
Probab=95.38 E-value=0.02 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|+|.|++|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999764
No 387
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.38 E-value=0.24 Score=51.01 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=31.8
Q ss_pred HHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 236 INESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 236 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
+...+-.+.-+++||+--. -|......+...+..-..+..||+||.+...+.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 5566667788999998643 233334444444433233567999998876443
No 388
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.37 E-value=0.022 Score=54.84 Aligned_cols=121 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCC---cccHHHHHHHHHHH-
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATN---LVELNALLLRINES- 239 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~~- 239 (674)
.+++.|.|+.|.||||+.+.+.-.. +..+.. .+|.+.. ..-.+...|...++..... ......-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G--~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIG--CFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcC--CCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886421 111111 1111110 0012222333333222110 01111111112222
Q ss_pred -cCCCeEEEEEeCCCCC-Chhh----HHHHHHhhcCCCCCcEEEEEcCChhHHhhcCC
Q 039885 240 -IAREKFLLVLDDVWTE-DYNK----WESFRRCLINGQRGSKILVTTRKETVAGMMES 291 (674)
Q Consensus 240 -l~~kr~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~ 291 (674)
+..++-|+++|+.-.. +..+ ...+...+.. .|..+|++|....++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 2356789999997432 1222 1223333333 37899999999888876543
No 389
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.33 E-value=0.17 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999764
No 390
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.24 Score=54.95 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=85.8
Q ss_pred CceeechhhHHHHHHHh---cCCCCC----CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKL---LGEGSE----QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L---~~~~~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.+..++.+.+.. ...... .-...+.+.++|++|.|||.||+++++. ....|-. +...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~-----v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFIS-----VKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEE-----eeCH----
Confidence 34666666555555543 221110 0235568999999999999999999983 3334422 2211
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC------C-----hhhHHHHHHhhcCCC--CCcEE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE------D-----YNKWESFRRCLINGQ--RGSKI 276 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~-----~~~~~~l~~~l~~~~--~gs~I 276 (674)
+++....+ .....+........+...+.|.+|+++.- + ......+...+.... .+..|
T Consensus 311 ----~l~sk~vG-----esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ----ELLSKWVG-----ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----HHhccccc-----hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11111100 11122233333444678899999998431 1 123344444443222 33334
Q ss_pred EEEcCChhHHhhc-----CCCCeEeCCCCChHhhHHHHHHHhh
Q 039885 277 LVTTRKETVAGMM-----ESTDVISIKELSERECWSLFERIAF 314 (674)
Q Consensus 277 ivTtR~~~va~~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~ 314 (674)
|-||-........ .-...+.+.+-+.++..+.|+.+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5455443322211 2245788888999999999998874
No 391
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.32 E-value=0.022 Score=55.61 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=38.2
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
+..++++.+.... .+..+|+|.|+||+|||||...+....+-+.+=-.++-|+-|.+++--.++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4566667666432 3568999999999999999988876543333333455566566665544443
No 392
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.32 E-value=0.19 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|.|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999865
No 393
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.30 E-value=0.007 Score=58.66 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=60.5
Q ss_pred hhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCC--CCc-cccccccCCCcccEEEecccccccc
Q 039885 513 LPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDL--MID-ELPETCCELFNLQTLEIRQRGYYLR 589 (674)
Q Consensus 513 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~--~i~-~lP~~i~~L~~L~~L~l~~~~~~~~ 589 (674)
+......+..|..|++ .+..++.+ ..+..|++|++|.+|.| .+. .++...-++++|++|++++| .+.
T Consensus 35 ~~gl~d~~~~le~ls~-------~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N--ki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSV-------INVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN--KIK 104 (260)
T ss_pred cccccccccchhhhhh-------hccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC--ccc
Confidence 3333445556666666 55554432 23447889999999999 443 77777777899999999999 444
Q ss_pred ccccc---cccCccCCeeeeeeeC
Q 039885 590 RLPHG---FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 590 ~lP~~---i~~L~~L~~L~l~~~~ 610 (674)
. +++ +..+.+|..|++|++.
T Consensus 105 ~-lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 105 D-LSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred c-ccccchhhhhcchhhhhcccCC
Confidence 3 333 5677788899998876
No 394
>PRK10867 signal recognition particle protein; Provisional
Probab=95.29 E-value=0.045 Score=58.65 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=20.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997766654
No 395
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.28 E-value=0.16 Score=49.18 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=32.6
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHhh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~~ 288 (674)
.+...+..++-++++|+--. -|......+...+... ..|..||++|.+......
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 35556666778999998643 2334444454444432 246678888887765543
No 396
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.28 E-value=0.15 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|.|||||++.++..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 397
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.063 Score=57.13 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=51.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhhCC-------CCCcccHH-----
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD-EYRIAKAIIEALEGS-------ATNLVELN----- 230 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 230 (674)
-..++|+|..|+|||||++.+.... ..+.++.+-+.+... ..++...++..-... +.+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998632 224556666666443 344555544332111 11111111
Q ss_pred HHHHHHHHHc--CCCeEEEEEeCCC
Q 039885 231 ALLLRINESI--AREKFLLVLDDVW 253 (674)
Q Consensus 231 ~~~~~l~~~l--~~kr~LlVlDdv~ 253 (674)
...-.+.+++ +++..|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1222344555 6899999999993
No 398
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.27 E-value=0.058 Score=53.73 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=55.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccc--ccccceEEEEEeCCCC-CHHHHHHHHHHHhhCCC-------CCcccHH--
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDV--INHFGKRIWVCVSDPF-DEYRIAKAIIEALEGSA-------TNLVELN-- 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~-------~~~~~~~-- 230 (674)
.-..++|.|-.|+|||+|+..+.+.... +.+-+.++++-+.+.. ...++..++.+.-.... .+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456899999999999999988875321 1234678888888755 44556665554321111 1111111
Q ss_pred ---HHHHHHHHHc--C-CCeEEEEEeCCC
Q 039885 231 ---ALLLRINESI--A-REKFLLVLDDVW 253 (674)
Q Consensus 231 ---~~~~~l~~~l--~-~kr~LlVlDdv~ 253 (674)
...-.+.+++ + +++.|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1223355555 3 789999999994
No 399
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.25 E-value=0.43 Score=47.61 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=80.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
++|+|-.. ..++..++.... ...+.+.|+|+.|+|||+-++.+++. .+...-+..+..++...+...+.
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHH
Confidence 35665432 334444443322 13347889999999999999998874 22333446677777777777777
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCC
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRG 273 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 273 (674)
........ .........+...+++..-+|+.|+........++.+.......+-|
T Consensus 141 ~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 141 AAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred HHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 66655432 23344555566666888889999999887777888887665544333
No 400
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.25 E-value=0.0081 Score=58.73 Aligned_cols=176 Identities=14% Similarity=0.191 Sum_probs=79.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC---CcccHHHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT---NLVELNALLLRINES 239 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~ 239 (674)
+.+++.|+|+.|.||||+.+.+.... +-.+ .-.+|.+.. ....+...++..++.... ..+....-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~la~--~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-LMAQ--IGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-HHHH--hCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 45789999999999999988875310 0000 001111111 000011122222221110 111222222223333
Q ss_pred c--CCCeEEEEEeCCC---CC-Chh--hHHHHHHhhcCCCCCcEEEEEcCChhHHhhcCCCC---eEeCCCCChHhhHHH
Q 039885 240 I--AREKFLLVLDDVW---TE-DYN--KWESFRRCLINGQRGSKILVTTRKETVAGMMESTD---VISIKELSERECWSL 308 (674)
Q Consensus 240 l--~~kr~LlVlDdv~---~~-~~~--~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~~~---~~~l~~L~~~~~~~L 308 (674)
+ ..++-|++||..- +. +.. .|. +...+.. ..|+.+|+||....+...+.... ..++.....++.-.+
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 3 3568899999983 21 111 222 2233332 34678999998777766543322 122211111100011
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039885 309 FERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLR 351 (674)
Q Consensus 309 f~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 351 (674)
-..+-+..+.. -...|-++++.+ |+|-.+..-|..+.
T Consensus 182 ~~~Y~l~~G~~-----~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 TMLYKVEKGAC-----DQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred eEEEEEeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 00001111111 134466677666 89988888877664
No 401
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.25 E-value=0.21 Score=49.43 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=32.8
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
.+...+..+.-++++|+... -+......+...+.....|..||++|.+.....
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 35555666677999998744 234445555555543235667888887766554
No 402
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.24 E-value=0.18 Score=49.56 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=61.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC-------------------
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA------------------- 223 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------------- 223 (674)
.-.++.|.|.+|+||||||..+.... . ..-..++|++... +...+... +++++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45789999999999999998765421 1 1234567877643 33444333 22221100
Q ss_pred -----CCcccHHHHHHHHHHHcCC---CeEEEEEeCCCCC---ChhhHHHHHHhhcC--CCCCcEEEEEcC
Q 039885 224 -----TNLVELNALLLRINESIAR---EKFLLVLDDVWTE---DYNKWESFRRCLIN--GQRGSKILVTTR 281 (674)
Q Consensus 224 -----~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~IivTtR 281 (674)
....+.+++...+++..+. +.-++|+|.+... ++.....+...+.. ...|..+|+|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0012455666666665532 3458899987421 22211222111211 235778888876
No 403
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.24 E-value=0.06 Score=57.57 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=48.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCC------CCCcccH-----HH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGS------ATNLVEL-----NA 231 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~------~~~~~~~-----~~ 231 (674)
.-..++|+|..|+|||||++.+..... ....+++..--..-++.++....+...... ..+.... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345799999999999999998876322 222344443223334444444444332111 1111111 11
Q ss_pred HHHHHHHHc--CCCeEEEEEeCC
Q 039885 232 LLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 232 ~~~~l~~~l--~~kr~LlVlDdv 252 (674)
..-.+.+++ +++..|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344444 589999999999
No 404
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.22 E-value=0.11 Score=51.36 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=33.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
.-.++.|.|.+|+|||++|.++.... . ..=..++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 56789999999999999997764421 1 2234577777654 566665553
No 405
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.22 E-value=0.18 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 457999999999999999999875
No 406
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.22 E-value=0.43 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988864
No 407
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.14 Score=50.45 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~ 287 (674)
-.+...+-.+.-+++||+.-. -|...-..+...+... ..|..||++|.+.....
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 335555666777999998643 2334444454554432 23667888888776543
No 408
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.21 E-value=0.25 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.+..-
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 409
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.15 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|+.|+|||||++.++.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 410
>PRK06762 hypothetical protein; Provisional
Probab=95.21 E-value=0.014 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 411
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.20 E-value=0.14 Score=51.94 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHH
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVA 286 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va 286 (674)
-.+.+.+..+.-+++||+... -|......+...+..- ..|..||++|.+...+
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 345666777788999998744 2334444444444322 2366788888776654
No 412
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.20 E-value=0.017 Score=58.22 Aligned_cols=93 Identities=25% Similarity=0.272 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCC
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATN 225 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 225 (674)
...+++.+... -+-+.++|+.|+|||++++.......- ..| ...-++.+...+...+ +.+++.-......
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQL-QKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHH-HHCCCTTECECTT
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCC
Confidence 34556655533 245789999999999999988764221 111 1234455554333333 2222221110000
Q ss_pred cccHHHHHHHHHHHcCCCeEEEEEeCCCCCCh
Q 039885 226 LVELNALLLRINESIAREKFLLVLDDVWTEDY 257 (674)
Q Consensus 226 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~ 257 (674)
. .-.--.+|+.++.+||+--...
T Consensus 92 ~---------~~gP~~~k~lv~fiDDlN~p~~ 114 (272)
T PF12775_consen 92 R---------VYGPPGGKKLVLFIDDLNMPQP 114 (272)
T ss_dssp E---------EEEEESSSEEEEEEETTT-S--
T ss_pred C---------CCCCCCCcEEEEEecccCCCCC
Confidence 0 0000146899999999955443
No 413
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.15 E-value=0.14 Score=50.64 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=69.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----------------cc-ceEEEEEeCCC--------------------
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----------------HF-GKRIWVCVSDP-------------------- 205 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------~F-~~~~wv~vs~~-------------------- 205 (674)
.-.+++|+|+.|+|||||.+.++.-..... .+ ...++|.-+..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 446899999999999999999976211100 00 01223221110
Q ss_pred -C---CH--HHHHHHHHHHhhCCC------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC--C
Q 039885 206 -F---DE--YRIAKAIIEALEGSA------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN--G 270 (674)
Q Consensus 206 -~---~~--~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~ 270 (674)
+ +. .+...+.++.++... .+.+.-+.-.-.+.+.|..+.=+++||+--+ -|...--++...+.. .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0 11 123333444443321 1223334444567788888888999997522 122222233333332 1
Q ss_pred CCCcEEEEEcCChhHHhhcC
Q 039885 271 QRGSKILVTTRKETVAGMME 290 (674)
Q Consensus 271 ~~gs~IivTtR~~~va~~~~ 290 (674)
..|..||+++.+-..|...+
T Consensus 187 ~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred hcCCEEEEEecCHHHHHHhC
Confidence 35778999999887776543
No 414
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.12 Score=52.60 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=33.9
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~ 287 (674)
-.|.+.+..++-+++||+... -|......+...+..- ..|..||++|.+.....
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 345666777788999998754 2334445555555432 23677888888766554
No 415
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.14 E-value=0.022 Score=58.38 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=44.1
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|.++.++++++.+.....+.+..-+|+.++|+.|.||||||..+.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999765543356778999999999999999998876
No 416
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.13 E-value=0.021 Score=55.85 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998763
No 417
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.085 Score=51.19 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAG 287 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~ 287 (674)
.+...+..+.-+++||+--. -|......+...+..- ..|..||++|.+.....
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 35555666778999998643 2344555555555432 23667888887766443
No 418
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.13 E-value=0.21 Score=47.85 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 039885 166 TISLVGMGGIGKTTLAQFVY 185 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~ 185 (674)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999886
No 419
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.13 E-value=0.23 Score=47.65 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|+.|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 420
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.11 E-value=0.21 Score=51.57 Aligned_cols=53 Identities=26% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC-CCCCcEEEEEcCChhHHhh
Q 039885 236 INESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN-GQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 236 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va~~ 288 (674)
+...+-.+.=+++||+--. -|...-..+...+.. ...|..||+||.+..-+..
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~ 203 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 5566667788999998643 233333333333332 2347789999988765443
No 421
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.11 E-value=0.027 Score=55.85 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
-.+++..+.... ++..||+|.|.||+|||||.-.+......+++--.++=|+-|.+++--.++-+=
T Consensus 37 a~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 37 ARELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 456666666443 377899999999999999998887655445555566677777777665555443
No 422
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.10 E-value=0.51 Score=45.40 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHh-hcC-CCCCcEEEEEcCChhHHhh
Q 039885 230 NALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRC-LIN-GQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 230 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~-l~~-~~~gs~IivTtR~~~va~~ 288 (674)
+...-.+.+.+..+.-++++|+--. -+....+.+... +.. ...|..||++|.+......
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 3344456677778889999998643 233444445442 322 2346778888877665543
No 423
>PTZ00301 uridine kinase; Provisional
Probab=95.10 E-value=0.016 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998875
No 424
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.17 Score=51.25 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999653
No 425
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.09 E-value=0.26 Score=50.43 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.++++.|+.|+|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 426
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.09 E-value=0.22 Score=56.83 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=79.1
Q ss_pred ceeechhhHHHHHHHhc---CCCCC---CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 039885 138 DVCGRVEEKSTLKSKLL---GEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 211 (674)
++.|.+...+++.+.+. ..... ...-.+-|.++|++|.|||++|+.+.... ...| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 46777766655555432 11100 01112348999999999999999998742 2222 2222221 1
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC----------hhhHHHHHHh----hcC--CCCCcE
Q 039885 212 AKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED----------YNKWESFRRC----LIN--GQRGSK 275 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~----l~~--~~~gs~ 275 (674)
. ....+. ....+...+.......+++|++|+++... ...+...... +.. ...+.-
T Consensus 222 ~----~~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V----EMFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H----Hhhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 111110 11122233333334567899999985421 1122222222 221 123445
Q ss_pred EEEEcCChhHHhh--c---CCCCeEeCCCCChHhhHHHHHHHhh
Q 039885 276 ILVTTRKETVAGM--M---ESTDVISIKELSERECWSLFERIAF 314 (674)
Q Consensus 276 IivTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~ 314 (674)
+|.||........ . .-...+.+...+.++-.+++..+.-
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5557765543221 1 1235677888888888888877653
No 427
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.09 E-value=0.19 Score=51.81 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC-CCCCcEEEEEcCChhHHhh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN-GQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va~~ 288 (674)
.+...+-.+.-+++||+--. -|+..-..+...+.. ...|..||+||.+...+..
T Consensus 134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~ 189 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADK 189 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 35566667788999998643 233333333333332 1246789999988765543
No 428
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.27 Score=48.95 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 232 LLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 232 ~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
..-.+.+.+..+.-+++||+.-. -|...-..+...+.....|..||++|.+.....
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 33445666667778999998643 233333444444443223667888877766443
No 429
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.09 E-value=0.11 Score=50.06 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHH-HHHHhhcCCC-C-CcEEEEEcCChhHHhh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWE-SFRRCLINGQ-R-GSKILVTTRKETVAGM 288 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~-~l~~~l~~~~-~-gs~IivTtR~~~va~~ 288 (674)
.+.+.+..+.-++++|+.-. -+..... .+...+.... . |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 35566677888999998743 2333444 4545443322 2 5678888888776543
No 430
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.013 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+.|.+.|.+|+||||+|+++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 45788999999999999998763
No 431
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.04 E-value=0.16 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999988865
No 432
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.03 E-value=0.023 Score=49.37 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 039885 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 211 (674)
|.|+|.+|+||||+|+.+... +...|.. |....+..+.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCceeE---EEecCCCCcccc
Confidence 679999999999999999883 5556643 333443444443
No 433
>PRK03839 putative kinase; Provisional
Probab=95.03 E-value=0.016 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 434
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.21 Score=51.33 Aligned_cols=50 Identities=30% Similarity=0.323 Sum_probs=34.2
Q ss_pred ceeechhhHHHHHHHhcCCCC------CCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 138 DVCGRVEEKSTLKSKLLGEGS------EQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
++.|.++.++-|.+...-+-- +-...-+-|..+|++|.|||-||++|+.+
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 466776666666665432110 00224577899999999999999999985
No 435
>PRK08006 replicative DNA helicase; Provisional
Probab=95.02 E-value=2.7 Score=46.02 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=37.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
...++.|-|.+|+|||++|..++.......... +++ .|-..+..++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~-V~~--fSlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKP-VLI--FSLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCe-EEE--EeccCCHHHHHHHHHHHhc
Confidence 346788899999999999988765432222222 222 2555678888888887653
No 436
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.02 E-value=0.055 Score=50.81 Aligned_cols=120 Identities=16% Similarity=0.008 Sum_probs=63.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEE--EEEeCCCCCHHHHHHHHH--HHh--hCC-----CCCc---ccH
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRI--WVCVSDPFDEYRIAKAII--EAL--EGS-----ATNL---VEL 229 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~il--~~l--~~~-----~~~~---~~~ 229 (674)
...|.|+|..|-||||.|.-+.-.. ....+.+.+ |+.-.........++.+- ... +.. .... ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA-VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 4679999999999999997664321 112222211 222221223333333310 000 000 0001 112
Q ss_pred HHHHHHHHHHcCCCe-EEEEEeCCCC---CChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 230 NALLLRINESIAREK-FLLVLDDVWT---EDYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 230 ~~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
....+..++.+.... =|+|||.+-. ...-..+++...+.....+.-||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 233444555665444 5999999822 112345677777777777889999999763
No 437
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.00 E-value=0.19 Score=45.73 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 438
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.02 Score=54.63 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+.+.+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 439
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.00 E-value=0.043 Score=56.17 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=50.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT-----NLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (674)
.-+++-|+|+.|+||||||..+... ....-..++||+..+.+++.. ++.++.+.. .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4578999999999999999888763 333345688999988776643 344443321 1233455555555
Q ss_pred HHcC-CCeEEEEEeCC
Q 039885 238 ESIA-REKFLLVLDDV 252 (674)
Q Consensus 238 ~~l~-~kr~LlVlDdv 252 (674)
..++ +..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 34458899987
No 440
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.00 E-value=0.19 Score=52.54 Aligned_cols=56 Identities=21% Similarity=0.174 Sum_probs=34.0
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
.-.|.+.|..+.-++++|+.-. -|...-..+...+..- ..|..||++|.+..++..
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3446667777788999998643 2333334444444432 236678888887766544
No 441
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.99 E-value=0.28 Score=53.68 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=32.6
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC-CCCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN-GQRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va~ 287 (674)
-.+...+...+-+++||+--. -|......+...+.. ...|..||++|.+.....
T Consensus 152 VaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 152 LGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 346666667788999998643 233434444444432 234667888888765443
No 442
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.19 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.++..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999763
No 443
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.19 Score=48.82 Aligned_cols=58 Identities=28% Similarity=0.201 Sum_probs=38.3
Q ss_pred ccCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCccccccc
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF 194 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 194 (674)
.-+++-|=.+.++++.+.....--+ .-+..+-|.++|++|.|||-+|++|+|. ....|
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr--tdacf 239 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR--TDACF 239 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc--cCceE
Confidence 3345667777777777654322100 0234567889999999999999999993 44444
No 444
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.96 E-value=0.24 Score=49.49 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999763
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.92 E-value=0.031 Score=49.39 Aligned_cols=41 Identities=22% Similarity=0.124 Sum_probs=28.8
Q ss_pred hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc
Q 039885 144 EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN 188 (674)
Q Consensus 144 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 188 (674)
++.+++-+.|...-. ...+|.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555543211 34589999999999999999998753
No 446
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.92 E-value=0.088 Score=55.26 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=59.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHH
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDV----INHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRIN 237 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 237 (674)
...+-+.|||..|.|||.|+-..|+...+ +-||. .+..++-+.+..-......+. .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHH
Confidence 35677999999999999999999986443 22332 333344333332221222223 334
Q ss_pred HHcCCCeEEEEEeCCCCCChhhHHHHHHhhcC-CCCCcEEEEEcCChh
Q 039885 238 ESIAREKFLLVLDDVWTEDYNKWESFRRCLIN-GQRGSKILVTTRKET 284 (674)
Q Consensus 238 ~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~ 284 (674)
+.+.++..||.||++.-.+..+-.-+...|.. ...|. |||+|-|..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 45566777999999866555443333333332 24565 555555543
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.91 E-value=0.02 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 448
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.91 E-value=0.11 Score=52.38 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=45.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH--HHHHHHHHHhhCCC---CCcccH-HHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY--RIAKAIIEALEGSA---TNLVEL-NALLLRI 236 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~il~~l~~~~---~~~~~~-~~~~~~l 236 (674)
..+++.++|++|+||||++..++... ...-..+.+++.. .+... +-++...+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999998887532 2221234455433 33332 33333344433221 111122 2222334
Q ss_pred HHHcCCCeEEEEEeCCC
Q 039885 237 NESIAREKFLLVLDDVW 253 (674)
Q Consensus 237 ~~~l~~kr~LlVlDdv~ 253 (674)
........-++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44334445578888663
No 449
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.88 E-value=0.27 Score=48.65 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 235 RINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 235 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
.+...+..+.-+++||+.-. -|......+...+... ..|..||++|.+......
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 35566666778999998643 2344445555555432 236678888888765443
No 450
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.87 E-value=0.089 Score=58.48 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=79.3
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|....+.++++.+..-.. .-.-|.|+|..|+||+++|+.+..... + .-..-+.++++.-. .+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC--HHHHHH--
Confidence 3689998888888776643221 112378999999999999999865321 1 11122344544422 222222
Q ss_pred HHhhCCCCCc-ccHHHH-HHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCCh
Q 039885 217 EALEGSATNL-VELNAL-LLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRKE 283 (674)
Q Consensus 217 ~~l~~~~~~~-~~~~~~-~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 283 (674)
.+.+..... ....+. ...+. ....=.|+||+++.........+...+..+. ...|||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 122211100 000000 00011 1122347899998877777777777775431 124788877654
Q ss_pred h---HHhh-c-------CCCCeEeCCCCCh
Q 039885 284 T---VAGM-M-------ESTDVISIKELSE 302 (674)
Q Consensus 284 ~---va~~-~-------~~~~~~~l~~L~~ 302 (674)
- +... + -....+++++|.+
T Consensus 350 l~~l~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 350 LVELVQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred HHHHHHcCCccHHHHhhcCeeEEeCCCccc
Confidence 2 1110 0 0124677888865
No 451
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.11 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 452
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.86 E-value=0.048 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=17.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999998774
No 453
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.86 E-value=0.036 Score=64.18 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=51.0
Q ss_pred CCeEEEEEeCCCCC-ChhhHHHH----HHhhcCCCCCcEEEEEcCChhHHhhcCCCCeEeCCCCChH-hhHHHHHHHhhc
Q 039885 242 REKFLLVLDDVWTE-DYNKWESF----RRCLINGQRGSKILVTTRKETVAGMMESTDVISIKELSER-ECWSLFERIAFF 315 (674)
Q Consensus 242 ~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~ 315 (674)
..+-|+++|+.-.. ++.....+ ...+. ..|+.+|+||....+.........+....+..+ +... | .+-+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p-~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P-TYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e-EEEEC
Confidence 47899999998542 33333333 23332 357899999998876544322111111111100 1000 0 00111
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039885 316 NRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRF 352 (674)
Q Consensus 316 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 352 (674)
.+.+ -...|-+|++++ |+|-.|..-|..+..
T Consensus 477 ~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 477 KGIP-----GESYAFEIAQRY-GIPHFIIEQAKTFYG 507 (771)
T ss_pred CCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 1111 133566677776 888888888876643
No 454
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.85 E-value=0.018 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.3
Q ss_pred ceeEEEeccccccccccccccccccccCC
Q 039885 522 CLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 522 ~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
+|++||| ++|.++.+|++|++|
T Consensus 1 ~L~~Ldl-------s~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDL-------SGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEE-------TSSEESEEGTTTTT-
T ss_pred CccEEEC-------CCCcCEeCChhhcCC
Confidence 5899999 999999999887764
No 455
>PRK04040 adenylate kinase; Provisional
Probab=94.84 E-value=0.022 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999774
No 456
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.83 E-value=0.028 Score=61.01 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=53.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEE-EEeCCCCCHHHHHHHHHHHhhC----C
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIW-VCVSDPFDEYRIAKAIIEALEG----S 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~il~~l~~----~ 222 (674)
+++++|..-. .-...+|+|++|+|||||++.|.+... ..+-++.++ +-|.+... ++ .+|-+.+.. .
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpe--EV-tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPE--EV-TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchh--hH-HHHHHhccceEEEE
Confidence 5666665433 345688999999999999999988421 123344433 33444322 21 222333311 1
Q ss_pred CCCc-cc----HHHHHHHHHHHc--CCCeEEEEEeCC
Q 039885 223 ATNL-VE----LNALLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 223 ~~~~-~~----~~~~~~~l~~~l--~~kr~LlVlDdv 252 (674)
+.+. .. ...+.-.+.+++ .++.+||++|++
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111 11 122333344555 689999999999
No 457
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.31 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|+.|+|||||++.++..
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 458
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.80 E-value=0.41 Score=46.89 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|.|||||++.++..
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999753
No 459
>PRK04328 hypothetical protein; Provisional
Probab=94.79 E-value=0.2 Score=49.95 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=61.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC-------------------
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA------------------- 223 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------------- 223 (674)
.-.++.|.|.+|+|||+||.++.... . ..-..++|++... ++.++.+. +++++-..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee--~~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEE--HPVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeC--CHHHHHHH-HHHcCCCHHHHhhcCCEEEEecccccc
Confidence 46789999999999999998765431 2 2234567777665 44444333 23332110
Q ss_pred -----------CCcccHHHHHHHHHHHcCC-CeEEEEEeCCCC---CChhhHHH----HHHhhcCCCCCcEEEEEcC
Q 039885 224 -----------TNLVELNALLLRINESIAR-EKFLLVLDDVWT---EDYNKWES----FRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 224 -----------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~---~~~~~~~~----l~~~l~~~~~gs~IivTtR 281 (674)
.+..+...+...+.+.++. +.-++|+|.+-. .+...... +...+ ...|..+|+|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~l--k~~g~t~llt~e 171 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVL--SGLGCTAIFVSQ 171 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHH--HhCCCEEEEEEC
Confidence 0123455566666666543 445799999732 11111111 22222 245777888864
No 460
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.78 E-value=0.015 Score=49.59 Aligned_cols=21 Identities=48% Similarity=0.611 Sum_probs=18.5
Q ss_pred EEEEecCCChHHHHHHHHhcC
Q 039885 167 ISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~ 187 (674)
|-|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998764
No 461
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.78 E-value=0.065 Score=56.46 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=48.6
Q ss_pred CceeechhhHHHHHHHhcCC------CC--CCCCceEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeC-C
Q 039885 137 SDVCGRVEEKSTLKSKLLGE------GS--EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF---GKRIWVCVS-D 204 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~------~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs-~ 204 (674)
..+||.++.++.+...+... .. ...-..+.|.++|++|+|||++|+.+.... ...| +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l--~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh--CCeEEEeecceeecCCcc
Confidence 35889888888887666531 00 001123678999999999999999998742 2222 222122211 1
Q ss_pred CCCHHHHHHHHHHHh
Q 039885 205 PFDEYRIAKAIIEAL 219 (674)
Q Consensus 205 ~~~~~~~~~~il~~l 219 (674)
..+.+.+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665554
No 462
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.11 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|..|.|||||++.+.-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999865
No 463
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.74 E-value=0.059 Score=58.00 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=55.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHH----
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF-DEYRIAKAIIEALEGS-------ATNLVELN---- 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 230 (674)
.-..++|+|.+|+|||||+.++..... +.+-+.++++-+.+.. ...++...+...-... +.+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 346799999999999999988876532 2355777787777644 3445555554432111 11111111
Q ss_pred -HHHHHHHHHc---CCCeEEEEEeCC
Q 039885 231 -ALLLRINESI---AREKFLLVLDDV 252 (674)
Q Consensus 231 -~~~~~l~~~l---~~kr~LlVlDdv 252 (674)
...-.+.+++ +++..|+++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 2233455666 379999999999
No 464
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.27 Score=51.81 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC--CCCCcEEEEEcCChhHHhh
Q 039885 232 LLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN--GQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 232 ~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~IivTtR~~~va~~ 288 (674)
-.-.|.+.+..+.-+++||+--. -|...-..+...+.. ...|..||++|.+..-+..
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 200 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMT 200 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 33446677777888999998643 233333334333332 1236678888887654433
No 465
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.72 E-value=0.34 Score=48.09 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
-.+.+.+-.+.-+++||+.-. -|......+...+..-..+..||++|.+.....
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 345566666777999998643 344444445444443222457888888766543
No 466
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.49 Score=47.80 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=41.2
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-hhHHhh-cCCCCeEeCCCC
Q 039885 241 AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-ETVAGM-MESTDVISIKEL 300 (674)
Q Consensus 241 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va~~-~~~~~~~~l~~L 300 (674)
.+++=++|+|++.....+.+..+...+-....++.+|++|.+ ..+... .+-...+.+.++
T Consensus 93 e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 356668899999988888999999988776667776666665 334322 233446666654
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.68 E-value=0.019 Score=55.14 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+|+|.|..|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 468
>PRK00625 shikimate kinase; Provisional
Probab=94.67 E-value=0.022 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|.++|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999763
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.11 Score=59.10 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=44.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD--EYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
.+|++++|+.|+||||.+.+++...........+..++.. .+. ..+-++...+.++.......+..++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999998887642211111233444432 232 3444555555554333222233444333332 23
Q ss_pred CCeEEEEEeCC
Q 039885 242 REKFLLVLDDV 252 (674)
Q Consensus 242 ~kr~LlVlDdv 252 (674)
++ =+|++|=.
T Consensus 263 ~~-D~VLIDTA 272 (767)
T PRK14723 263 DK-HLVLIDTV 272 (767)
T ss_pred CC-CEEEEeCC
Confidence 32 25555544
No 470
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.66 E-value=0.32 Score=55.74 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcC-CCCCcEEEEEcCChhHH
Q 039885 234 LRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLIN-GQRGSKILVTTRKETVA 286 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IivTtR~~~va 286 (674)
=.|.+.+-.++-+++||+.-.. |.+.=..+...+.. ....+.|+||-|...+.
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 3467778888899999987431 22222334444443 23357788888877654
No 471
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.63 E-value=0.12 Score=55.62 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=53.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHH----
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF-DEYRIAKAIIEALEGS-------ATNLVELN---- 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 230 (674)
.-..++|+|.+|+|||||+..+...... .+=+.++++-+.+.. .+.++..++...-... +.+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3457999999999999999887653221 111356677776644 3455666655432111 11111111
Q ss_pred -HHHHHHHHHc---CCCeEEEEEeCC
Q 039885 231 -ALLLRINESI---AREKFLLVLDDV 252 (674)
Q Consensus 231 -~~~~~l~~~l---~~kr~LlVlDdv 252 (674)
...-.+.+++ ++++.|+++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1233355665 679999999999
No 472
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.63 E-value=0.061 Score=54.12 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=38.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
+.-+++.|+|.+|+|||++|.++... ...+...++||+... +..++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 36689999999999999999777663 445577889998876 45555554444
No 473
>PRK08149 ATP synthase SpaL; Validated
Probab=94.60 E-value=0.11 Score=55.41 Aligned_cols=87 Identities=10% Similarity=0.209 Sum_probs=50.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhCC-------CCCcccH-----
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP-FDEYRIAKAIIEALEGS-------ATNLVEL----- 229 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~-------~~~~~~~----- 229 (674)
.-..++|+|..|+|||||++.++.... -+.++...+... .+..++..+.+...... ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345789999999999999999987422 233333334332 34555555555532211 1111111
Q ss_pred HHHHHHHHHHc--CCCeEEEEEeCCC
Q 039885 230 NALLLRINESI--AREKFLLVLDDVW 253 (674)
Q Consensus 230 ~~~~~~l~~~l--~~kr~LlVlDdv~ 253 (674)
......+.+++ ++|+.|+++||+-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 12223344444 5899999999993
No 474
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.59 E-value=0.16 Score=54.41 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=51.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhhCC-------CCCcccHH----
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD-EYRIAKAIIEALEGS-------ATNLVELN---- 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~-------~~~~~~~~---- 230 (674)
.-..++|+|..|+|||||++.++.... .+.++.+-+.+... ..++..+.+..-+.. +.+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987432 24555566665443 334444444332111 11111111
Q ss_pred -HHHHHHHHHc--CCCeEEEEEeCCC
Q 039885 231 -ALLLRINESI--AREKFLLVLDDVW 253 (674)
Q Consensus 231 -~~~~~l~~~l--~~kr~LlVlDdv~ 253 (674)
...-.+.+++ +++..|+++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1222344555 5899999999993
No 475
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.59 E-value=0.19 Score=51.79 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=48.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCcccHH-----
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGS-------ATNLVELN----- 230 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 230 (674)
...++|+|..|+|||||.+.+..... -+..+...+.. .-+..++....+..-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999887432 12333344432 234455555444432111 11111111
Q ss_pred HHHHHHHHHc--CCCeEEEEEeCC
Q 039885 231 ALLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 231 ~~~~~l~~~l--~~kr~LlVlDdv 252 (674)
...-.+.+++ ++|..|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222234444 589999999998
No 476
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.59 E-value=0.11 Score=55.57 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=48.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCcccHH----
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGS-------ATNLVELN---- 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~-------~~~~~~~~---- 230 (674)
.-..++|+|..|+|||||++.+..... . +..+.+.+.. .-...++....+..-+.. +.+.....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 345799999999999999998887422 1 2222233333 223444444443332111 11111111
Q ss_pred -HHHHHHHHHc--CCCeEEEEEeCCC
Q 039885 231 -ALLLRINESI--AREKFLLVLDDVW 253 (674)
Q Consensus 231 -~~~~~l~~~l--~~kr~LlVlDdv~ 253 (674)
...-.+.+++ +++..|+++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222345555 5899999999993
No 477
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=1.6 Score=44.26 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhhc-CCCCeEeCCCCChHhhHHHHHH
Q 039885 241 AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGMM-ESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 241 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~-~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
.+++=++|+|++.......++.+...+-....++.+|++|.+. .+...+ +-...+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 4566789999999988889999999887766667777666554 343332 2345777766 66666666643
No 478
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.58 E-value=0.16 Score=57.72 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999864
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.58 E-value=0.025 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 480
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.57 E-value=0.39 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-..++|+|+.|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999965
No 481
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.24 Score=48.84 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHH
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVA 286 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va 286 (674)
-.+.+.+..+.=+++||+.-. .|......+...+... ..|..||++|.+....
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 335566666778999998744 3344555555555432 2266788887776543
No 482
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.18 Score=51.30 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~ 287 (674)
-.|...+..+.-++++|+-.. -|......+...+..- ..|..||++|.+.....
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 335566667788999998754 2344455555555432 23677888888766554
No 483
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.56 E-value=0.56 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcCc
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDN 188 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~ 188 (674)
-|.++|..|+||||++..+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37799999999999999987643
No 484
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.55 E-value=0.14 Score=54.63 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=50.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhCC-------CCCcccHHH---
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP-FDEYRIAKAIIEALEGS-------ATNLVELNA--- 231 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~--- 231 (674)
.-..++|+|..|+|||||++.+.+.. +.+..+++.+... ..+.+++.+....-... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44678999999999999999998742 3444555555543 33445555543211000 011111111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCCC
Q 039885 232 --LLLRINESI--AREKFLLVLDDVW 253 (674)
Q Consensus 232 --~~~~l~~~l--~~kr~LlVlDdv~ 253 (674)
..-.+.+++ ++++.|+++||+-
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122344555 5899999999993
No 485
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.54 E-value=0.021 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 486
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.53 E-value=0.032 Score=50.72 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..||-|+|.+|+||||||+++...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 487
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.037 Score=48.87 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=43.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
.+-|.|.|-+|+||||+|..+... + ..-|+++|+-.....+...--+.. .+...+.+.+.+.|...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~------~-~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK------T-GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH------h-CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 456899999999999999999852 2 124677776433333322211111 123455667777777776554
Q ss_pred eE
Q 039885 244 KF 245 (674)
Q Consensus 244 r~ 245 (674)
.+
T Consensus 77 g~ 78 (176)
T KOG3347|consen 77 GN 78 (176)
T ss_pred Cc
Confidence 43
No 488
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.50 E-value=0.17 Score=58.17 Aligned_cols=131 Identities=18% Similarity=0.126 Sum_probs=71.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
+.++|....+.++.+....-.. ...-|.|+|..|+||+++|+.+.+..... -..-+.|++..- ....+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~-~~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLY-PDEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCC-ChHHHHHHhc
Confidence 4689998888888777654332 12237899999999999999998742111 112233444432 2222222332
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC---C--------CcEEEEEcCC
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ---R--------GSKILVTTRK 282 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~IivTtR~ 282 (674)
......... ... ..+. ....=.|+||++..........+...+..+. . ..|||.||..
T Consensus 398 g~~~~~~~~-~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSEN-GRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccC-CCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 211000000 000 0000 1122358999998877777777877775432 1 3467777664
No 489
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.50 E-value=0.027 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 490
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.49 E-value=0.46 Score=48.11 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 457999999999999999999763
No 491
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.48 E-value=0.032 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 492
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.48 E-value=0.023 Score=30.59 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=5.6
Q ss_pred CCcceeecCCCCcccc
Q 039885 552 HLRFLQLRDLMIDELP 567 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP 567 (674)
+|+.|+|++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 493
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.47 E-value=0.53 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|..|.|||||++.++-.
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998753
No 494
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.45 E-value=0.094 Score=57.99 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=71.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc-ccccccceEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN-DVINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.. +....| +-|++..-. +..+..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~lles- 281 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLEA- 281 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHHH-
Confidence 3599999888888887753321 22458899999999999999998742 111222 233333321 222221
Q ss_pred HHHhhCCCCCcc-cHH--HHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcC
Q 039885 216 IEALEGSATNLV-ELN--ALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTR 281 (674)
Q Consensus 216 l~~l~~~~~~~~-~~~--~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR 281 (674)
.+.+.....- ... .....+. ....=-|+||++..........+...+.... ...|||.||.
T Consensus 282 --eLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~ 356 (526)
T TIGR02329 282 --ELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATH 356 (526)
T ss_pred --HhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccC
Confidence 2222111000 000 0000000 0122348999998777676777777765431 1237888775
Q ss_pred Ch
Q 039885 282 KE 283 (674)
Q Consensus 282 ~~ 283 (674)
..
T Consensus 357 ~~ 358 (526)
T TIGR02329 357 CA 358 (526)
T ss_pred CC
Confidence 43
No 495
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.44 E-value=0.13 Score=55.80 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=45.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
..+|++++|+.|+||||.+.+++.....+..-..+..|.... .....+-++...+..+.......+..+....+ ..+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 347999999999999999998886432222112334444332 12333444444554443322111222222222 2334
Q ss_pred CCeEEEEEeCCC
Q 039885 242 REKFLLVLDDVW 253 (674)
Q Consensus 242 ~kr~LlVlDdv~ 253 (674)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 44 467777764
No 496
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.65 Score=43.13 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhc-CCCCCcEEEEEcCChh
Q 039885 230 NALLLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLI-NGQRGSKILVTTRKET 284 (674)
Q Consensus 230 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~IivTtR~~~ 284 (674)
++..-.+.+..-.++-|-+||+.-.. |.+.-..+...+. ....|.-||.||..+.
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 33444466667789999999987542 2222222333332 2456778999997653
No 497
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.39 Score=48.71 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhcCCCCeEeC
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGMMESTDVISI 297 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l 297 (674)
-.|.+.+..+.=+++||+--. -|......+...+.....+..||++|.+......+. .+.+.+
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~-d~i~~l 233 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVA-DWTAFF 233 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC-CEEEEE
Confidence 335556666778999998643 234444555555543233567888888776554432 234444
No 498
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.027 Score=53.12 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=21.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999885
No 499
>PRK13409 putative ATPase RIL; Provisional
Probab=94.43 E-value=0.26 Score=55.64 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=67.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccc-cc--cce-EEEEEeCCC------CCHHHHH-------------HHHHHHhh
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVI-NH--FGK-RIWVCVSDP------FDEYRIA-------------KAIIEALE 220 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~~-~~wv~vs~~------~~~~~~~-------------~~il~~l~ 220 (674)
-.+++|+|+.|+|||||++.++...... +. ++. +.+ +.+. .++.+.+ .++++.++
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 3589999999999999999998642211 11 111 111 1221 1222222 22233322
Q ss_pred CCC------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhhcCC
Q 039885 221 GSA------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGMMES 291 (674)
Q Consensus 221 ~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~~~~ 291 (674)
... ...+.-+.-.-.+...+..+.-+++||+--. -|...-..+...+... ..|..||++|.+...+..+.
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a- 521 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS- 521 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC-
Confidence 211 1112223333446677777888999997533 2333444444444332 23566888888776554432
Q ss_pred CCeEeCC
Q 039885 292 TDVISIK 298 (674)
Q Consensus 292 ~~~~~l~ 298 (674)
..++.++
T Consensus 522 Drvivl~ 528 (590)
T PRK13409 522 DRLMVFE 528 (590)
T ss_pred CEEEEEc
Confidence 2344443
No 500
>PTZ00494 tuzin-like protein; Provisional
Probab=94.42 E-value=1.2 Score=47.14 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=104.5
Q ss_pred ccccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 039885 133 LIDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 133 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 212 (674)
......+|.|+.|-..+...|...+ ...++++.+.|.-|.||++|.+.....+.+ ..++|.+.. .++-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg---~EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGG---TEDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecC---CcchH
Confidence 3456679999999888888887655 347899999999999999999877664322 345677664 45667
Q ss_pred HHHHHHhhCCCCCc--ccHHHHH---HHHHHHcCCCeEEEEEeCCCCCC-hhhHHHHHHhhcCCCCCcEEEEEcCChhHH
Q 039885 213 KAIIEALEGSATNL--VELNALL---LRINESIAREKFLLVLDDVWTED-YNKWESFRRCLINGQRGSKILVTTRKETVA 286 (674)
Q Consensus 213 ~~il~~l~~~~~~~--~~~~~~~---~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~va 286 (674)
+.+.+.++.+..+. +-++-+. ..-+....++.-+||+-==.-.+ ...+.+. ..|.....-+.|++---.+.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhc
Confidence 88899998765332 1122222 22223345677777774211111 1233333 2334444556777765544432
Q ss_pred hhc---CCCCeEeCCCCChHhhHHHHHHH
Q 039885 287 GMM---ESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 287 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
... ..-.-|.+.+++.++|.++-.+.
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 221 12347889999999998887654
Done!